BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025491
(252 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 267 bits (683), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 140/256 (54%), Positives = 184/256 (71%), Gaps = 9/256 (3%)
Query: 3 SNQAEANTWVQDNVQNFANNVKFKYIAVGNEAKPGDD----YAQYLVPAMRNIQNAINGA 58
+N + A +WVQ NV+ F ++V+F+YIAVGNE P + AQ+++PAMRNI +AI A
Sbjct: 64 TNPSNAKSWVQKNVRGFWSSVRFRYIAVGNEISPVNRGTAWLAQFVLPAMRNIHDAIRSA 123
Query: 59 SLGSQIKVSTAIELGALDASSPPSAGSFKQDYKPILDPLIAFLNENNSPLLVNLYPYFAI 118
L QIKVSTAI+L + S PPSAG+F+ D + L+P+I FL+ SPLL N+YPYF
Sbjct: 124 GLQDQIKVSTAIDLTLVGNSYPPSAGAFRDDVRSYLNPIIRFLSSIRSPLLANIYPYFTY 183
Query: 119 AGD-RNVPLDFALFSAQQPVVSDPPLSYLNLFYAQLDATYAALEKAGGGSLDIVISESGW 177
AG+ R++ L +ALF++ VV D Y NLF A LDA Y+ALE+A GGSL++V+SESGW
Sbjct: 184 AGNPRDISLPYALFTSPSVVVWDGQRGYKNLFDATLDALYSALERASGGSLEVVVSESGW 243
Query: 178 PTAGGDGALTNVDNARTYNNNLIQHVKQGSPKKP-RPIETYIFAMFDENGKTGPETERHW 236
P+AG A DN RTY +NLIQHVK+G+PK+P R IETY+FAMFDEN K PE E+H+
Sbjct: 244 PSAGAFAA--TFDNGRTYLSNLIQHVKRGTPKRPKRAIETYLFAMFDENKKQ-PEVEKHF 300
Query: 237 GLFAPDKQPKYQVNFN 252
GLF P+K KY +NF+
Sbjct: 301 GLFFPNKWQKYNLNFS 316
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 243 bits (621), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 131/257 (50%), Positives = 176/257 (68%), Gaps = 13/257 (5%)
Query: 3 SNQAEANTWVQDNVQNFANNVKFKYIAVGNEAKPGDD---YAQYLVPAMRNIQNAINGAS 59
+N + AN WVQDN++N +VKFKYIAVGNE PG + YA+++ PAM NI NA++ A
Sbjct: 65 ANPSNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALSSAG 124
Query: 60 LGSQIKVSTAIELGALDASSPPSAGSFKQDYKPILDPLIAFLNENNSPLLVNLYPYFAIA 119
L +QIKVST+ G L + PP F+++YK ++P+I FL +N PLL N+YPYF
Sbjct: 125 LQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYPYFGHI 184
Query: 120 GDRN-VPLDFALFSAQQPVVSDPPLSYLNLFYAQLDATYAALEKAGGGSLDIVISESGWP 178
+ N VPL +ALF+ Q+ Y NLF A +D+ Y A EK GG +++I++SESGWP
Sbjct: 185 DNTNAVPLSYALFNQQR----RNDTGYQNLFDALVDSMYFATEKLGGQNIEIIVSESGWP 240
Query: 179 TAGGDGALTNVDNARTYNNNLIQHVKQ--GSPKKP-RPIETYIFAMFDENGKTGPETERH 235
+ G A + NARTY NLI HVK+ G+PKKP + IETY+FAMFDEN K G +E+H
Sbjct: 241 SEGHPAA--TLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGEASEKH 298
Query: 236 WGLFAPDKQPKYQVNFN 252
+GLF PD++PKYQ+NFN
Sbjct: 299 FGLFNPDQRPKYQLNFN 315
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 242 bits (618), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 132/253 (52%), Positives = 179/253 (70%), Gaps = 4/253 (1%)
Query: 1 MASNQAEANTWVQDNVQNFANNVKFKYIAVGNEAKPGDDYAQYLVPAMRNIQNAINGASL 60
+ASN + A W++ NV + +V F+YIAVGNE PG D AQY++PAMRNI NA++ A L
Sbjct: 62 LASNPSAAGDWIRRNVVAYWPSVSFRYIAVGNELIPGSDLAQYILPAMRNIYNALSSAGL 121
Query: 61 GSQIKVSTAIELGALDASSPPSAGSFKQDYKPILDPLIAFLNENNSPLLVNLYPYFAIAG 120
+QIKVSTA++ G L S PPSAG+F + L P++ FL N +PLLVN+YPYF+ G
Sbjct: 122 QNQIKVSTAVDTGVLGTSYPPSAGAFSSAAQAYLSPIVQFLASNGAPLLVNVYPYFSYTG 181
Query: 121 D-RNVPLDFALFSAQQPVVSDPPLSYLNLFYAQLDATYAALEKAGGGSLDIVISESGWPT 179
+ + L +ALF+A VV D SY NLF A +DA +AALE+ GG ++ +V+SESGWP+
Sbjct: 182 NPGQISLPYALFTASGVVVQDGRFSYQNLFDAIVDAVFAALERVGGANVAVVVSESGWPS 241
Query: 180 AGGDGALTNVDNARTYNNNLIQHVKQGSPKKP-RPIETYIFAMFDENGKTGPETERHWGL 238
AGG GA + NA+TYN NLI+HV G+P++P + IE YIF MF+EN K G E+++GL
Sbjct: 242 AGG-GAEASTSNAQTYNQNLIRHVGGGTPRRPGKEIEAYIFEMFNENQKAG-GIEQNFGL 299
Query: 239 FAPDKQPKYQVNF 251
F P+KQP YQ++F
Sbjct: 300 FYPNKQPVYQISF 312
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 241 bits (615), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 130/257 (50%), Positives = 175/257 (68%), Gaps = 13/257 (5%)
Query: 3 SNQAEANTWVQDNVQNFANNVKFKYIAVGNEAKPGDD---YAQYLVPAMRNIQNAINGAS 59
+N + AN WVQDN++N +VKFKYIAVGNE PG + YA+++ PAM NI NA++ A
Sbjct: 65 ANPSNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALSSAG 124
Query: 60 LGSQIKVSTAIELGALDASSPPSAGSFKQDYKPILDPLIAFLNENNSPLLVNLYPYFAIA 119
L +QIKVST+ G L + PP F+++YK ++P+I FL +N PLL N+YPYF
Sbjct: 125 LQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYPYFGHI 184
Query: 120 GDRN-VPLDFALFSAQQPVVSDPPLSYLNLFYAQLDATYAALEKAGGGSLDIVISESGWP 178
+ N VPL +ALF+ Q+ Y NLF A +D+ Y A EK GG +++I++S SGWP
Sbjct: 185 DNTNAVPLSYALFNQQR----RNDTGYQNLFDALVDSMYFATEKLGGQNIEIIVSASGWP 240
Query: 179 TAGGDGALTNVDNARTYNNNLIQHVKQ--GSPKKP-RPIETYIFAMFDENGKTGPETERH 235
+ G A + NARTY NLI HVK+ G+PKKP + IETY+FAMFDEN K G +E+H
Sbjct: 241 SEGHPAA--TLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGEASEKH 298
Query: 236 WGLFAPDKQPKYQVNFN 252
+GLF PD++PKYQ+NFN
Sbjct: 299 FGLFNPDQRPKYQLNFN 315
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 203 bits (516), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 110/242 (45%), Positives = 149/242 (61%), Gaps = 8/242 (3%)
Query: 11 WVQDNVQNFANNVKFKYIAVGNEAKPGDDYAQYLVPAMRNIQNAINGASLGSQIKVSTAI 70
WV+ N+Q + V F+Y+ VGNE G + LVPAM+N+ A+ A LG IKV+T++
Sbjct: 72 WVKSNIQAYPK-VSFRYVCVGNEVAGGAT--RNLVPAMKNVHGALVAAGLG-HIKVTTSV 127
Query: 71 ELGALDASSPPSAGSFKQDYKPILDPLIAFLNENNSPLLVNLYPYFAIAGD-RNVPLDFA 129
L SPPSAGSF + + P++ FL N+PL+ N+YPY A A + + + +A
Sbjct: 128 SQAILGVFSPPSAGSFTGEAAAFMGPVVQFLARTNAPLMANIYPYLAWAYNPSAMDMGYA 187
Query: 130 LFSAQQPVVSDPPLSYLNLFYAQLDATYAALEKAGGGSLDIVISESGWPTAGGDGALTNV 189
LF+A VV D Y NLF +DA Y A+ K GG S+ +V+SESGWP+ GG A
Sbjct: 188 LFNASGTVVRDGAYGYQNLFDTTVDAFYTAMGKHGGSSVKLVVSESGWPSGGGTAATP-- 245
Query: 190 DNARTYNNNLIQHVKQGSPKKPRPIETYIFAMFDENGKTGPETERHWGLFAPDKQPKYQV 249
NAR YN +LI HV +G+P+ P IETYIFAMF+EN K E++WGLF P+ Q Y +
Sbjct: 246 ANARFYNQHLINHVGRGTPRHPGAIETYIFAMFNENQKD-SGVEQNWGLFYPNMQHVYPI 304
Query: 250 NF 251
NF
Sbjct: 305 NF 306
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 200 bits (508), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 120/253 (47%), Positives = 159/253 (62%), Gaps = 10/253 (3%)
Query: 1 MASNQAEANTWVQDNVQNFANNVKFKYIAVGNEAKPGDDYAQYLVPAMRNIQNAINGASL 60
+A++ + A +WVQ+NV+ + V KYIA GNE + G Q ++PAMRN+ NA A+
Sbjct: 62 IAASTSNAASWVQNNVRPYYPAVNIKYIAAGNEVQGGA--TQSILPAMRNL-NAALSAAG 118
Query: 61 GSQIKVSTAIELGALDASSPPSAGSFKQDYKPILDPLIAFLNENNSPLLVNLYPYFAIAG 120
IKVST+I + S PPSAG FK Y + L+A +PLL N+YPYFA
Sbjct: 119 LGAIKVSTSIRFDEVANSFPPSAGVFKNAYMTDVARLLA---STGAPLLANVYPYFAYRD 175
Query: 121 D-RNVPLDFALFSAQQPVV-SDPPLSYLNLFYAQLDATYAALEKAGGGSLDIVISESGWP 178
+ ++ L++A F V + L+Y +LF A +DA YAALEKAG ++ +V+SESGWP
Sbjct: 176 NPGSISLNYATFQPGTTVRDQNNGLTYTSLFDAMVDAVYAALEKAGAPAVKVVVSESGWP 235
Query: 179 TAGGDGALTNVDNARTYNNNLIQHVKQGSPKKPRPIETYIFAMFDENGKTGPETERHWGL 238
+AGG A + NARTYN LI HV G+PKK +ETYIFAMF+EN KTG TER +GL
Sbjct: 236 SAGGFAA--SAGNARTYNQGLINHVGGGTPKKREALETYIFAMFNENQKTGDATERSFGL 293
Query: 239 FAPDKQPKYQVNF 251
F PDK P Y + F
Sbjct: 294 FNPDKSPAYNIQF 306
>pdb|3HNC|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp
pdb|3HNC|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp
pdb|3HND|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp And Substrate Gdp
pdb|3HND|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp And Substrate Gdp
pdb|3HNE|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Atp
pdb|3HNE|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Atp
pdb|3HNF|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Datp
pdb|3HNF|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Datp
Length = 792
Score = 30.0 bits (66), Expect = 1.2, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 13/93 (13%)
Query: 158 AALEKAGGGSLDIVIS---ESGWPTAGGDGALTN-VDNARTYNNNLIQHVKQGSPKKPRP 213
A + K+ GG + + +S +G AG +G V R YNN ++V QG K+P
Sbjct: 239 ALISKSAGG-IGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNT-ARYVDQGGNKRPGA 296
Query: 214 IETY-------IFAMFDENGKTGPETERHWGLF 239
Y IF D TG E +R LF
Sbjct: 297 FAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLF 329
>pdb|2XGV|A Chain A, Structure Of The N-Terminal Domain Of Capsid Protein From
Rabbit Endogenous Lentivirus (Relik)
Length = 142
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 208 PKKPRPIETYIFAMFDENGKTGPETERHWGLFAPDKQPKYQVNF 251
P R + +I E G T PET +WGL + D + QV
Sbjct: 13 PMSTRTVAAWI-RQTGEKGLTSPETITYWGLISQDLSSREQVQL 55
>pdb|2WGH|A Chain A, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
Complex With Datp And Mg.
pdb|2WGH|B Chain B, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
Complex With Datp And Mg
Length = 676
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 10/100 (10%)
Query: 149 FYAQLDATYAALEKAGGGSLDI-VISESGWPTAGGDGALTN-VDNARTYNNNLIQHVKQG 206
Y L + AGG + + I +G AG +G V R YNN ++V QG
Sbjct: 158 IYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNT-ARYVDQG 216
Query: 207 SPKKPRPIETY-------IFAMFDENGKTGPETERHWGLF 239
K+P Y IF D TG E +R LF
Sbjct: 217 GNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLF 256
>pdb|2YHE|A Chain A, Structure Determination Of The Stereoselective Inverting
Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
pdb|2YHE|B Chain B, Structure Determination Of The Stereoselective Inverting
Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
pdb|2YHE|C Chain C, Structure Determination Of The Stereoselective Inverting
Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
pdb|2YHE|D Chain D, Structure Determination Of The Stereoselective Inverting
Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
pdb|2YHE|E Chain E, Structure Determination Of The Stereoselective Inverting
Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
pdb|2YHE|F Chain F, Structure Determination Of The Stereoselective Inverting
Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
pdb|4AXH|A Chain A, Structure And Mechanism Of The First Inverting
Alkylsulfatase Specific For Secondary Alkylsulfatases
pdb|4AXH|B Chain B, Structure And Mechanism Of The First Inverting
Alkylsulfatase Specific For Secondary Alkylsulfatases
Length = 668
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 158 AALEKAGGGSLDIVISESGWPTAGGDGALTNVDNAR 193
A+LEK G + D++I + WP GGD T + + R
Sbjct: 339 ASLEKYGDRT-DVLIQQHNWPVWGGDKVRTYLADQR 373
>pdb|4AV7|A Chain A, Structure Determination Of The Double Mutant S233y F250g
From The Sec-Alkyl Sulfatase Pisa1
pdb|4AV7|B Chain B, Structure Determination Of The Double Mutant S233y F250g
From The Sec-Alkyl Sulfatase Pisa1
pdb|4AV7|C Chain C, Structure Determination Of The Double Mutant S233y F250g
From The Sec-Alkyl Sulfatase Pisa1
pdb|4AV7|D Chain D, Structure Determination Of The Double Mutant S233y F250g
From The Sec-Alkyl Sulfatase Pisa1
pdb|4AV7|E Chain E, Structure Determination Of The Double Mutant S233y F250g
From The Sec-Alkyl Sulfatase Pisa1
pdb|4AV7|F Chain F, Structure Determination Of The Double Mutant S233y F250g
From The Sec-Alkyl Sulfatase Pisa1
Length = 668
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 158 AALEKAGGGSLDIVISESGWPTAGGDGALTNVDNAR 193
A+LEK G + D++I + WP GGD T + + R
Sbjct: 339 ASLEKYGDRT-DVLIQQHNWPVWGGDKVRTYLADQR 373
>pdb|1V9C|A Chain A, Crystal Analysis Of Precorrin-8x Methyl Mutase From
Thermus Thermophilus
pdb|1V9C|B Chain B, Crystal Analysis Of Precorrin-8x Methyl Mutase From
Thermus Thermophilus
Length = 218
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 162 KAGGGSLDIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVKQGS 207
KA GG+ W DGA+ V NA T+ L++ ++QG+
Sbjct: 106 KATGGTRAEAAVAYAWEKGLLDGAIVGVGNAPTFLLALVEAIRQGA 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,201,917
Number of Sequences: 62578
Number of extensions: 356113
Number of successful extensions: 698
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 662
Number of HSP's gapped (non-prelim): 14
length of query: 252
length of database: 14,973,337
effective HSP length: 97
effective length of query: 155
effective length of database: 8,903,271
effective search space: 1380007005
effective search space used: 1380007005
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)