Query 025492
Match_columns 252
No_of_seqs 233 out of 2944
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 06:24:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025492.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025492hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02390 Methyltransf_4: Putat 100.0 6.8E-45 1.5E-49 302.2 19.1 188 43-248 6-195 (195)
2 KOG3115 Methyltransferase-like 100.0 1.8E-45 3.9E-50 297.5 12.4 247 1-252 1-248 (249)
3 COG0220 Predicted S-adenosylme 100.0 1.3E-44 2.9E-49 305.3 18.2 218 15-249 6-226 (227)
4 TIGR00091 tRNA (guanine-N(7)-) 100.0 8.4E-38 1.8E-42 260.0 20.7 187 44-248 6-193 (194)
5 PRK14121 tRNA (guanine-N(7)-)- 100.0 3.9E-35 8.6E-40 263.8 20.4 169 66-250 123-291 (390)
6 PRK01544 bifunctional N5-gluta 100.0 1.4E-34 3E-39 271.4 15.7 167 46-233 339-505 (506)
7 PRK00121 trmB tRNA (guanine-N( 100.0 2.7E-28 5.9E-33 204.0 17.9 176 41-236 27-202 (202)
8 COG2226 UbiE Methylase involve 99.8 4.2E-18 9E-23 144.7 12.0 156 66-239 52-218 (238)
9 PF12847 Methyltransf_18: Meth 99.7 1.2E-16 2.7E-21 120.3 10.8 108 66-187 2-111 (112)
10 PF01209 Ubie_methyltran: ubiE 99.7 8.9E-17 1.9E-21 137.1 10.2 105 66-187 48-153 (233)
11 PF13847 Methyltransf_31: Meth 99.7 6.9E-16 1.5E-20 123.1 13.4 108 66-189 4-112 (152)
12 PLN02396 hexaprenyldihydroxybe 99.7 2.1E-15 4.6E-20 134.2 14.3 151 66-243 132-287 (322)
13 PLN02233 ubiquinone biosynthes 99.7 1.7E-15 3.6E-20 131.5 13.3 108 66-187 74-182 (261)
14 PF05175 MTS: Methyltransferas 99.7 1.1E-15 2.3E-20 124.5 11.2 111 66-189 32-142 (170)
15 PF08241 Methyltransf_11: Meth 99.6 6.2E-16 1.3E-20 112.3 8.6 95 70-185 1-95 (95)
16 TIGR02469 CbiT precorrin-6Y C5 99.6 6.8E-15 1.5E-19 112.4 12.9 103 66-187 20-122 (124)
17 PRK07402 precorrin-6B methylas 99.6 1.4E-14 2.9E-19 120.5 15.7 118 66-203 41-158 (196)
18 PRK00107 gidB 16S rRNA methylt 99.6 7.5E-15 1.6E-19 121.2 13.9 116 66-204 46-161 (187)
19 COG2227 UbiG 2-polyprenyl-3-me 99.6 1.4E-15 3E-20 127.8 9.2 122 66-212 60-186 (243)
20 PRK08287 cobalt-precorrin-6Y C 99.6 2.1E-14 4.6E-19 118.4 15.3 117 66-204 32-148 (187)
21 PLN02244 tocopherol O-methyltr 99.6 7.1E-15 1.5E-19 132.3 13.2 104 66-187 119-223 (340)
22 TIGR02752 MenG_heptapren 2-hep 99.6 1.2E-14 2.6E-19 123.5 13.2 106 66-188 46-152 (231)
23 COG2519 GCD14 tRNA(1-methylade 99.6 8.9E-14 1.9E-18 117.8 17.7 117 65-204 94-212 (256)
24 PF13659 Methyltransf_26: Meth 99.6 7.4E-15 1.6E-19 111.5 9.8 115 67-188 2-116 (117)
25 TIGR00138 gidB 16S rRNA methyl 99.6 1.5E-14 3.3E-19 118.9 12.4 102 66-189 43-144 (181)
26 COG2242 CobL Precorrin-6B meth 99.6 4.9E-14 1.1E-18 114.5 15.1 120 66-206 35-154 (187)
27 PRK11036 putative S-adenosyl-L 99.6 3E-14 6.6E-19 123.1 13.1 108 66-191 45-153 (255)
28 PRK00377 cbiT cobalt-precorrin 99.6 8.6E-14 1.9E-18 115.9 15.1 121 66-205 41-163 (198)
29 COG4123 Predicted O-methyltran 99.6 2.4E-14 5.2E-19 121.9 11.7 131 66-203 45-185 (248)
30 PRK11088 rrmA 23S rRNA methylt 99.6 2.7E-14 5.9E-19 124.6 12.4 106 66-200 86-194 (272)
31 PRK01683 trans-aconitate 2-met 99.6 2.4E-14 5.1E-19 123.8 11.9 100 66-188 32-131 (258)
32 PRK14103 trans-aconitate 2-met 99.6 2.3E-14 5E-19 123.8 10.8 98 66-188 30-127 (255)
33 COG4106 Tam Trans-aconitate me 99.6 2.6E-14 5.6E-19 117.9 10.0 154 67-246 32-189 (257)
34 PRK15001 SAM-dependent 23S rib 99.6 8.6E-14 1.9E-18 126.2 14.3 124 67-200 230-354 (378)
35 TIGR00740 methyltransferase, p 99.5 8.7E-14 1.9E-18 119.1 12.5 106 66-187 54-161 (239)
36 KOG1540 Ubiquinone biosynthesi 99.5 2E-13 4.3E-18 115.3 14.1 153 66-241 101-277 (296)
37 TIGR03534 RF_mod_PrmC protein- 99.5 2.3E-13 5E-18 116.7 15.0 131 67-209 89-237 (251)
38 PRK15451 tRNA cmo(5)U34 methyl 99.5 6.8E-14 1.5E-18 120.5 11.1 106 66-187 57-164 (247)
39 KOG1271 Methyltransferases [Ge 99.5 4E-14 8.7E-19 113.8 9.0 154 65-248 67-227 (227)
40 PRK04266 fibrillarin; Provisio 99.5 2.1E-13 4.6E-18 115.9 13.6 102 66-186 73-175 (226)
41 TIGR00080 pimt protein-L-isoas 99.5 1.7E-13 3.6E-18 115.6 12.8 99 66-187 78-177 (215)
42 TIGR03533 L3_gln_methyl protei 99.5 4E-13 8.7E-18 118.0 15.5 126 67-204 123-266 (284)
43 TIGR00537 hemK_rel_arch HemK-r 99.5 2.6E-13 5.6E-18 111.2 13.1 125 67-205 21-158 (179)
44 PRK11207 tellurite resistance 99.5 1.8E-13 4E-18 113.9 12.0 104 66-187 31-134 (197)
45 PF08242 Methyltransf_12: Meth 99.5 4E-15 8.7E-20 110.0 1.5 99 70-183 1-99 (99)
46 PRK10258 biotin biosynthesis p 99.5 1.5E-13 3.3E-18 118.4 11.2 100 66-189 43-142 (251)
47 PRK06922 hypothetical protein; 99.5 1.9E-13 4.1E-18 129.9 11.8 114 66-187 419-537 (677)
48 PRK13944 protein-L-isoaspartat 99.5 4.5E-13 9.8E-18 112.3 12.7 99 66-187 73-173 (205)
49 PRK11873 arsM arsenite S-adeno 99.5 4.4E-13 9.5E-18 116.9 13.1 105 65-186 77-182 (272)
50 PF13649 Methyltransf_25: Meth 99.5 5E-14 1.1E-18 104.6 6.1 97 69-181 1-101 (101)
51 PRK13942 protein-L-isoaspartat 99.5 6.5E-13 1.4E-17 111.9 12.9 99 66-187 77-176 (212)
52 TIGR02072 BioC biotin biosynth 99.5 6.5E-13 1.4E-17 112.6 12.3 103 67-190 36-138 (240)
53 TIGR03704 PrmC_rel_meth putati 99.5 1.3E-12 2.8E-17 112.8 13.8 128 67-205 88-233 (251)
54 COG2230 Cfa Cyclopropane fatty 99.5 5.7E-13 1.2E-17 115.5 11.5 107 63-188 70-177 (283)
55 PRK11805 N5-glutamine S-adenos 99.5 1.7E-12 3.6E-17 115.2 14.8 126 67-204 135-278 (307)
56 PF08704 GCD14: tRNA methyltra 99.5 1.5E-12 3.3E-17 111.6 14.0 117 66-204 41-163 (247)
57 PRK14968 putative methyltransf 99.5 1.6E-12 3.6E-17 106.5 13.4 127 66-204 24-165 (188)
58 PTZ00098 phosphoethanolamine N 99.5 5.7E-13 1.2E-17 115.8 11.2 104 65-186 52-155 (263)
59 smart00828 PKS_MT Methyltransf 99.4 5.8E-13 1.3E-17 112.6 10.7 103 68-187 2-104 (224)
60 PRK14967 putative methyltransf 99.4 1.7E-12 3.8E-17 110.0 13.6 127 66-204 37-176 (223)
61 PRK09328 N5-glutamine S-adenos 99.4 2.8E-12 6E-17 111.7 15.2 131 66-208 109-257 (275)
62 TIGR00477 tehB tellurite resis 99.4 1.1E-12 2.4E-17 109.1 12.0 102 67-187 32-133 (195)
63 TIGR00536 hemK_fam HemK family 99.4 3.1E-12 6.7E-17 112.4 15.3 124 67-201 116-257 (284)
64 PLN02490 MPBQ/MSBQ methyltrans 99.4 8.2E-13 1.8E-17 118.2 11.5 102 66-187 114-215 (340)
65 PRK04457 spermidine synthase; 99.4 1.9E-12 4.1E-17 112.5 13.4 109 67-186 68-176 (262)
66 PRK00811 spermidine synthase; 99.4 1.8E-12 3.8E-17 113.9 13.0 130 66-202 77-210 (283)
67 PLN02336 phosphoethanolamine N 99.4 1.4E-12 3E-17 122.3 12.4 103 66-187 267-369 (475)
68 PRK09489 rsmC 16S ribosomal RN 99.4 2E-12 4.4E-17 116.2 13.0 119 67-200 198-317 (342)
69 PRK15068 tRNA mo(5)U34 methylt 99.4 3.5E-12 7.6E-17 113.9 14.1 104 66-187 123-226 (322)
70 PRK00517 prmA ribosomal protei 99.4 2.8E-12 6E-17 110.7 13.0 111 65-204 119-230 (250)
71 PF02353 CMAS: Mycolic acid cy 99.4 1.2E-12 2.7E-17 114.1 10.8 106 65-189 62-168 (273)
72 TIGR01177 conserved hypothetic 99.4 2.4E-12 5.1E-17 115.4 12.7 114 66-190 183-297 (329)
73 PRK14966 unknown domain/N5-glu 99.4 6.1E-12 1.3E-16 114.7 15.3 127 66-204 252-397 (423)
74 PRK08317 hypothetical protein; 99.4 3.2E-12 7E-17 108.1 12.6 104 66-187 20-124 (241)
75 COG2890 HemK Methylase of poly 99.4 4.2E-12 9.1E-17 111.2 13.0 126 68-207 113-257 (280)
76 PRK14901 16S rRNA methyltransf 99.4 9.1E-12 2E-16 115.6 15.7 135 66-207 253-407 (434)
77 PRK14902 16S rRNA methyltransf 99.4 6.8E-12 1.5E-16 116.8 14.6 136 66-209 251-404 (444)
78 KOG1270 Methyltransferases [Co 99.4 1.7E-13 3.7E-18 116.2 3.0 111 67-202 91-210 (282)
79 PRK12335 tellurite resistance 99.4 4.2E-12 9.1E-17 111.7 11.6 102 67-187 122-223 (287)
80 COG2813 RsmC 16S RNA G1207 met 99.4 1E-11 2.2E-16 108.1 13.6 122 66-201 159-281 (300)
81 PRK10901 16S rRNA methyltransf 99.4 7.9E-12 1.7E-16 115.8 13.8 136 66-209 245-397 (427)
82 PRK00312 pcm protein-L-isoaspa 99.4 1E-11 2.3E-16 104.3 12.9 98 66-188 79-176 (212)
83 TIGR00406 prmA ribosomal prote 99.4 1.5E-11 3.1E-16 108.4 14.3 116 65-203 159-275 (288)
84 PLN03075 nicotianamine synthas 99.4 9.4E-12 2E-16 109.0 12.7 107 66-187 124-233 (296)
85 TIGR00452 methyltransferase, p 99.4 5.8E-12 1.2E-16 111.8 11.2 104 66-187 122-225 (314)
86 TIGR01983 UbiG ubiquinone bios 99.4 2E-11 4.4E-16 103.0 14.1 153 66-240 46-198 (224)
87 TIGR00446 nop2p NOL1/NOP2/sun 99.4 8.2E-12 1.8E-16 108.6 11.7 132 66-206 72-221 (264)
88 PRK05785 hypothetical protein; 99.3 9E-12 2E-16 106.0 11.6 94 66-185 52-146 (226)
89 PLN02366 spermidine synthase 99.3 1.7E-11 3.8E-16 108.6 13.8 129 66-201 92-224 (308)
90 PRK01581 speE spermidine synth 99.3 1.1E-11 2.4E-16 111.0 12.3 131 67-203 152-288 (374)
91 PRK01544 bifunctional N5-gluta 99.3 1.7E-11 3.8E-16 115.6 14.3 127 67-204 140-285 (506)
92 PHA03411 putative methyltransf 99.3 1.3E-11 2.7E-16 106.9 11.2 113 66-193 65-189 (279)
93 TIGR03438 probable methyltrans 99.3 1.7E-11 3.7E-16 108.6 12.4 111 67-190 65-180 (301)
94 PRK14903 16S rRNA methyltransf 99.3 2.1E-11 4.6E-16 113.0 13.5 136 66-209 238-391 (431)
95 PRK00216 ubiE ubiquinone/menaq 99.3 2.2E-11 4.7E-16 103.4 12.5 106 66-187 52-158 (239)
96 PLN02781 Probable caffeoyl-CoA 99.3 1.1E-11 2.3E-16 106.0 10.5 103 66-185 69-176 (234)
97 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 2.4E-11 5.3E-16 102.0 12.1 103 66-187 40-143 (223)
98 TIGR00417 speE spermidine synt 99.3 3.3E-11 7.2E-16 105.2 13.3 116 67-190 74-189 (270)
99 PRK13943 protein-L-isoaspartat 99.3 2.8E-11 6.2E-16 107.8 12.8 100 66-188 81-181 (322)
100 PRK11188 rrmJ 23S rRNA methylt 99.3 1.4E-11 3.1E-16 103.5 10.1 119 66-201 52-179 (209)
101 PF05401 NodS: Nodulation prot 99.3 8.2E-12 1.8E-16 102.5 8.2 100 66-188 44-147 (201)
102 TIGR03840 TMPT_Se_Te thiopurin 99.3 1.2E-11 2.7E-16 104.1 9.5 107 66-187 35-152 (213)
103 PF07021 MetW: Methionine bios 99.3 8E-11 1.7E-15 96.4 13.9 152 66-247 14-169 (193)
104 PF01135 PCMT: Protein-L-isoas 99.3 1.9E-11 4.1E-16 102.6 10.6 99 66-187 73-172 (209)
105 PRK14904 16S rRNA methyltransf 99.3 6.2E-11 1.4E-15 110.4 14.9 113 66-188 251-378 (445)
106 PRK03612 spermidine synthase; 99.3 3E-11 6.5E-16 114.5 12.9 132 66-204 298-436 (521)
107 COG2518 Pcm Protein-L-isoaspar 99.3 3.1E-11 6.7E-16 100.2 11.3 97 66-187 73-169 (209)
108 PRK11705 cyclopropane fatty ac 99.3 3.2E-11 6.8E-16 110.2 12.2 101 65-187 167-267 (383)
109 cd02440 AdoMet_MTases S-adenos 99.3 3.5E-11 7.7E-16 87.1 10.2 103 68-186 1-103 (107)
110 TIGR02716 C20_methyl_CrtF C-20 99.3 3.6E-11 7.9E-16 106.6 12.2 103 66-187 150-254 (306)
111 PRK13168 rumA 23S rRNA m(5)U19 99.3 4.6E-11 1E-15 111.2 13.5 116 66-201 298-414 (443)
112 KOG2361 Predicted methyltransf 99.3 2.3E-12 5E-17 108.1 4.1 150 23-201 28-193 (264)
113 TIGR03587 Pse_Me-ase pseudamin 99.3 4.5E-11 9.8E-16 100.1 11.9 96 67-185 45-140 (204)
114 TIGR00438 rrmJ cell division p 99.3 2E-11 4.2E-16 100.8 9.4 118 66-201 33-160 (188)
115 PRK15128 23S rRNA m(5)C1962 me 99.3 7.2E-11 1.6E-15 108.1 14.0 115 66-188 221-340 (396)
116 KOG4300 Predicted methyltransf 99.3 1.6E-11 3.5E-16 100.8 8.6 113 67-201 78-199 (252)
117 PTZ00146 fibrillarin; Provisio 99.3 5.3E-11 1.2E-15 103.9 12.2 104 65-186 132-236 (293)
118 COG4122 Predicted O-methyltran 99.3 6.9E-11 1.5E-15 99.3 12.2 102 66-185 60-164 (219)
119 PLN02336 phosphoethanolamine N 99.3 3.4E-11 7.4E-16 113.0 10.9 104 66-186 38-141 (475)
120 PRK13255 thiopurine S-methyltr 99.2 4.3E-11 9.3E-16 101.2 10.2 107 66-187 38-155 (218)
121 TIGR00563 rsmB ribosomal RNA s 99.2 1E-10 2.2E-15 108.4 13.5 115 66-187 239-368 (426)
122 PRK05134 bifunctional 3-demeth 99.2 1.6E-10 3.5E-15 98.3 13.7 106 66-190 49-154 (233)
123 PF03848 TehB: Tellurite resis 99.2 9E-11 2E-15 96.9 11.7 103 66-187 31-133 (192)
124 PF08003 Methyltransf_9: Prote 99.2 1.2E-10 2.6E-15 101.4 13.0 163 45-248 102-270 (315)
125 TIGR00479 rumA 23S rRNA (uraci 99.2 1.3E-10 2.8E-15 107.8 13.9 116 66-200 293-409 (431)
126 PRK03522 rumB 23S rRNA methylu 99.2 9.9E-11 2.1E-15 104.3 12.6 113 66-199 174-286 (315)
127 PF13489 Methyltransf_23: Meth 99.2 2.5E-11 5.4E-16 96.6 7.8 136 66-240 23-158 (161)
128 PRK10909 rsmD 16S rRNA m(2)G96 99.2 1.2E-10 2.5E-15 97.2 12.0 106 66-189 54-161 (199)
129 KOG1541 Predicted protein carb 99.2 1.9E-11 4.1E-16 101.3 7.1 106 66-188 51-161 (270)
130 smart00138 MeTrc Methyltransfe 99.2 5.8E-11 1.3E-15 103.3 9.6 112 67-187 101-242 (264)
131 PRK11783 rlmL 23S rRNA m(2)G24 99.2 1.1E-10 2.4E-15 114.3 11.9 134 66-209 539-678 (702)
132 TIGR02021 BchM-ChlM magnesium 99.2 3.5E-10 7.5E-15 95.5 13.4 149 66-244 56-205 (219)
133 COG2264 PrmA Ribosomal protein 99.2 2.2E-10 4.7E-15 100.3 11.7 118 65-205 162-281 (300)
134 TIGR02085 meth_trns_rumB 23S r 99.2 4.4E-10 9.5E-15 102.5 13.8 113 66-199 234-346 (374)
135 PF01596 Methyltransf_3: O-met 99.2 9.7E-11 2.1E-15 98.0 8.7 102 67-185 47-153 (205)
136 KOG3191 Predicted N6-DNA-methy 99.2 3.6E-10 7.8E-15 91.1 11.3 128 66-204 44-185 (209)
137 PLN02476 O-methyltransferase 99.2 1.8E-10 4E-15 100.3 10.4 103 66-185 119-226 (278)
138 PRK07580 Mg-protoporphyrin IX 99.2 1.4E-09 3.1E-14 92.0 15.6 144 66-244 64-213 (230)
139 TIGR02081 metW methionine bios 99.2 1.3E-09 2.8E-14 90.4 14.6 153 66-246 14-168 (194)
140 PRK06202 hypothetical protein; 99.2 1.9E-10 4.1E-15 98.0 9.8 101 66-186 61-165 (232)
141 PHA03412 putative methyltransf 99.1 4.4E-10 9.6E-15 95.3 10.6 102 66-182 50-158 (241)
142 KOG2904 Predicted methyltransf 99.1 5.4E-10 1.2E-14 95.5 11.0 115 67-190 150-288 (328)
143 COG1041 Predicted DNA modifica 99.1 2E-10 4.3E-15 101.8 8.7 109 66-188 198-311 (347)
144 smart00650 rADc Ribosomal RNA 99.1 9.1E-10 2E-14 89.4 11.6 98 66-187 14-113 (169)
145 PLN02672 methionine S-methyltr 99.1 1.6E-09 3.4E-14 109.1 15.0 134 67-204 120-295 (1082)
146 PF03291 Pox_MCEL: mRNA cappin 99.1 5.1E-10 1.1E-14 100.1 10.4 123 66-193 63-192 (331)
147 PF06325 PrmA: Ribosomal prote 99.1 3.4E-10 7.4E-15 99.6 9.0 113 65-202 161-274 (295)
148 PF01170 UPF0020: Putative RNA 99.1 9.1E-10 2E-14 90.4 10.9 117 66-192 29-155 (179)
149 PLN02585 magnesium protoporphy 99.1 5.5E-09 1.2E-13 93.0 15.6 151 66-246 145-300 (315)
150 KOG2899 Predicted methyltransf 99.0 1.8E-09 3.9E-14 90.8 10.4 133 67-203 60-228 (288)
151 PLN02823 spermine synthase 99.0 4E-09 8.6E-14 94.6 13.4 130 67-202 105-241 (336)
152 TIGR02143 trmA_only tRNA (urac 99.0 5E-09 1.1E-13 94.8 12.9 112 68-200 200-324 (353)
153 PRK05031 tRNA (uracil-5-)-meth 99.0 5.4E-09 1.2E-13 94.9 13.1 113 67-200 208-333 (362)
154 PLN02589 caffeoyl-CoA O-methyl 99.0 2.5E-09 5.4E-14 91.9 10.2 104 66-185 80-188 (247)
155 PF02475 Met_10: Met-10+ like- 99.0 4.2E-09 9E-14 87.8 9.9 99 65-185 101-200 (200)
156 PRK11727 23S rRNA mA1618 methy 99.0 3.4E-08 7.4E-13 87.9 16.1 136 66-209 115-266 (321)
157 TIGR00095 RNA methyltransferas 99.0 1E-08 2.2E-13 84.9 11.8 108 66-189 50-161 (189)
158 PRK04338 N(2),N(2)-dimethylgua 99.0 7.9E-09 1.7E-13 94.3 11.9 103 67-190 59-162 (382)
159 PRK13256 thiopurine S-methyltr 98.9 6.3E-09 1.4E-13 88.2 10.0 108 66-187 44-163 (226)
160 COG2263 Predicted RNA methylas 98.9 6.6E-09 1.4E-13 84.6 9.1 116 66-205 46-161 (198)
161 KOG3010 Methyltransferase [Gen 98.9 4.2E-09 9.1E-14 88.6 6.9 96 67-185 35-135 (261)
162 COG2265 TrmA SAM-dependent met 98.9 3.5E-08 7.6E-13 91.3 13.4 119 66-203 294-412 (432)
163 KOG1975 mRNA cap methyltransfe 98.9 1.3E-08 2.9E-13 88.8 9.9 130 66-200 118-250 (389)
164 PF01564 Spermine_synth: Sperm 98.9 2.3E-08 4.9E-13 86.1 11.4 131 66-203 77-211 (246)
165 PF06080 DUF938: Protein of un 98.8 8.7E-09 1.9E-13 85.5 7.6 104 68-186 28-140 (204)
166 KOG2915 tRNA(1-methyladenosine 98.8 8.2E-08 1.8E-12 82.2 13.6 124 64-206 104-229 (314)
167 PRK11933 yebU rRNA (cytosine-C 98.8 3E-08 6.5E-13 92.6 11.4 128 65-200 113-257 (470)
168 COG0421 SpeE Spermidine syntha 98.8 5.6E-08 1.2E-12 85.1 12.3 117 68-193 79-196 (282)
169 TIGR00755 ksgA dimethyladenosi 98.8 5.4E-08 1.2E-12 84.1 12.1 104 66-197 30-136 (253)
170 PTZ00338 dimethyladenosine tra 98.8 2.8E-08 6E-13 87.7 9.3 75 66-152 37-111 (294)
171 PLN02232 ubiquinone biosynthes 98.8 1.7E-08 3.8E-13 81.2 7.4 81 93-187 1-81 (160)
172 PRK14896 ksgA 16S ribosomal RN 98.8 3.4E-08 7.4E-13 85.6 9.6 72 66-152 30-101 (258)
173 PRK00274 ksgA 16S ribosomal RN 98.8 3E-08 6.4E-13 86.7 8.9 72 66-151 43-114 (272)
174 PF02527 GidB: rRNA small subu 98.7 1E-07 2.2E-12 78.5 10.3 98 68-187 51-148 (184)
175 PF00891 Methyltransf_2: O-met 98.7 4.7E-08 1E-12 83.7 8.6 95 67-187 102-199 (241)
176 PF05724 TPMT: Thiopurine S-me 98.7 2.1E-08 4.6E-13 84.8 6.3 110 66-187 38-155 (218)
177 COG1092 Predicted SAM-dependen 98.7 1.3E-07 2.8E-12 86.1 10.9 120 66-191 218-340 (393)
178 COG0144 Sun tRNA and rRNA cyto 98.6 3.9E-07 8.5E-12 82.5 12.4 138 65-209 156-313 (355)
179 COG2521 Predicted archaeal met 98.6 4.9E-08 1.1E-12 81.9 5.4 133 61-204 130-269 (287)
180 TIGR00308 TRM1 tRNA(guanine-26 98.6 3.9E-07 8.5E-12 82.9 11.2 106 67-192 46-153 (374)
181 PF09445 Methyltransf_15: RNA 98.6 2.2E-07 4.7E-12 74.8 8.1 78 68-156 2-81 (163)
182 COG4976 Predicted methyltransf 98.6 1.2E-08 2.7E-13 85.2 0.9 99 67-187 127-225 (287)
183 COG2520 Predicted methyltransf 98.6 5.2E-07 1.1E-11 80.6 10.8 103 65-189 188-291 (341)
184 KOG1499 Protein arginine N-met 98.6 2.8E-07 6.1E-12 81.7 9.0 103 66-184 61-164 (346)
185 PF05958 tRNA_U5-meth_tr: tRNA 98.6 7.4E-07 1.6E-11 80.7 11.7 112 68-200 199-323 (352)
186 PF10294 Methyltransf_16: Puta 98.5 2.4E-07 5.3E-12 75.5 7.5 111 66-188 46-157 (173)
187 PF10672 Methyltrans_SAM: S-ad 98.5 4.1E-07 8.8E-12 79.8 9.0 118 66-190 124-241 (286)
188 PRK11783 rlmL 23S rRNA m(2)G24 98.5 1.2E-06 2.5E-11 86.2 13.2 120 66-196 191-356 (702)
189 PF03602 Cons_hypoth95: Conser 98.5 5.6E-07 1.2E-11 74.1 8.4 110 66-190 43-156 (183)
190 PRK00050 16S rRNA m(4)C1402 me 98.5 4E-07 8.7E-12 80.2 7.8 76 66-150 20-98 (296)
191 KOG2187 tRNA uracil-5-methyltr 98.5 5.4E-07 1.2E-11 83.3 8.9 118 66-200 384-503 (534)
192 KOG1661 Protein-L-isoaspartate 98.5 9E-07 2E-11 73.2 9.3 105 66-187 83-193 (237)
193 COG0742 N6-adenine-specific me 98.5 3.3E-06 7.2E-11 69.2 11.9 111 66-190 44-157 (187)
194 COG0030 KsgA Dimethyladenosine 98.4 1.6E-06 3.4E-11 74.8 9.2 73 66-151 31-104 (259)
195 PF02384 N6_Mtase: N-6 DNA Met 98.4 2E-06 4.4E-11 76.3 9.8 120 66-191 47-187 (311)
196 KOG1663 O-methyltransferase [S 98.4 2.1E-06 4.6E-11 72.0 9.2 104 66-185 74-181 (237)
197 PF03141 Methyltransf_29: Puta 98.4 3E-07 6.6E-12 85.0 4.5 98 67-188 119-220 (506)
198 PRK04148 hypothetical protein; 98.4 3.3E-06 7.2E-11 65.7 9.3 91 67-187 18-109 (134)
199 TIGR02987 met_A_Alw26 type II 98.4 2.6E-06 5.7E-11 81.1 10.5 80 66-151 32-121 (524)
200 TIGR03439 methyl_EasF probable 98.4 3.9E-06 8.5E-11 74.8 10.7 106 66-189 77-199 (319)
201 KOG3420 Predicted RNA methylas 98.3 1.7E-06 3.6E-11 67.7 7.2 95 66-177 49-143 (185)
202 TIGR00478 tly hemolysin TlyA f 98.3 3.6E-06 7.8E-11 71.6 9.8 96 66-187 76-171 (228)
203 PF12147 Methyltransf_20: Puta 98.3 9.1E-06 2E-10 70.7 11.8 147 67-240 137-293 (311)
204 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.3 2E-06 4.4E-11 75.6 8.0 115 66-187 86-219 (283)
205 PF05185 PRMT5: PRMT5 arginine 98.3 2.8E-06 6.1E-11 79.1 9.3 103 66-183 187-293 (448)
206 TIGR01444 fkbM_fam methyltrans 98.3 2.2E-06 4.8E-11 67.0 7.3 58 68-131 1-58 (143)
207 COG0116 Predicted N6-adenine-s 98.3 1E-05 2.2E-10 73.1 11.7 111 68-189 194-346 (381)
208 PF08123 DOT1: Histone methyla 98.3 1.8E-06 3.9E-11 72.3 6.3 107 66-187 43-157 (205)
209 PF05148 Methyltransf_8: Hypot 98.2 2.1E-06 4.6E-11 71.3 6.0 104 66-209 73-181 (219)
210 KOG1709 Guanidinoacetate methy 98.2 7.2E-06 1.6E-10 68.2 8.8 104 66-186 102-205 (271)
211 PF05219 DREV: DREV methyltran 98.2 1E-05 2.2E-10 69.4 9.2 93 66-187 95-188 (265)
212 COG0357 GidB Predicted S-adeno 98.2 9.7E-06 2.1E-10 68.1 8.9 96 67-184 69-165 (215)
213 COG0500 SmtA SAM-dependent met 98.2 4.6E-05 9.9E-10 57.8 11.5 103 69-189 52-157 (257)
214 KOG3045 Predicted RNA methylas 98.1 7.6E-06 1.7E-10 69.9 7.2 81 66-187 181-264 (325)
215 KOG2940 Predicted methyltransf 98.1 6.6E-06 1.4E-10 69.1 6.1 102 66-187 73-174 (325)
216 PF01728 FtsJ: FtsJ-like methy 98.1 6.5E-06 1.4E-10 67.3 5.9 105 66-188 24-140 (181)
217 COG4262 Predicted spermidine s 98.0 7.8E-05 1.7E-09 66.7 11.9 132 66-204 290-428 (508)
218 KOG1500 Protein arginine N-met 98.0 3.2E-05 6.9E-10 68.4 9.3 100 66-185 178-280 (517)
219 PF13578 Methyltransf_24: Meth 98.0 1.8E-06 3.8E-11 64.3 1.2 100 70-185 1-103 (106)
220 KOG0820 Ribosomal RNA adenine 98.0 2.6E-05 5.7E-10 67.0 7.8 75 65-151 58-132 (315)
221 PRK00536 speE spermidine synth 98.0 0.00014 3.1E-09 63.0 12.2 113 67-202 74-190 (262)
222 COG3963 Phospholipid N-methylt 98.0 8.6E-05 1.9E-09 59.6 9.6 104 66-187 49-156 (194)
223 PF13679 Methyltransf_32: Meth 97.9 3.3E-05 7.2E-10 60.8 6.6 63 66-131 26-92 (141)
224 PRK10742 putative methyltransf 97.9 0.00024 5.1E-09 60.9 11.9 88 66-157 89-179 (250)
225 PF01269 Fibrillarin: Fibrilla 97.9 0.00083 1.8E-08 56.5 14.9 122 65-204 73-204 (229)
226 PF05891 Methyltransf_PK: AdoM 97.8 4E-05 8.6E-10 64.2 6.4 146 66-246 56-202 (218)
227 COG4076 Predicted RNA methylas 97.8 7.5E-05 1.6E-09 61.1 6.7 98 67-184 34-132 (252)
228 PRK10611 chemotaxis methyltran 97.8 4.4E-05 9.5E-10 67.2 5.8 108 67-187 117-262 (287)
229 COG0293 FtsJ 23S rRNA methylas 97.8 0.00016 3.4E-09 60.3 8.6 137 16-187 11-159 (205)
230 PF00398 RrnaAD: Ribosomal RNA 97.7 0.00038 8.2E-09 60.5 11.1 93 66-180 31-124 (262)
231 KOG1331 Predicted methyltransf 97.7 2.1E-05 4.5E-10 68.1 2.9 96 66-185 46-141 (293)
232 KOG1122 tRNA and rRNA cytosine 97.7 0.00047 1E-08 62.7 11.2 116 65-187 241-371 (460)
233 PF10354 DUF2431: Domain of un 97.7 0.0002 4.3E-09 58.0 7.6 131 72-209 3-148 (166)
234 COG1352 CheR Methylase of chem 97.6 0.00023 5E-09 61.9 8.1 108 67-187 98-241 (268)
235 COG1889 NOP1 Fibrillarin-like 97.6 0.0016 3.5E-08 54.0 12.0 122 65-204 76-206 (231)
236 PF06962 rRNA_methylase: Putat 97.6 0.00045 9.7E-09 54.2 8.0 93 91-189 1-94 (140)
237 TIGR00006 S-adenosyl-methyltra 97.5 0.00047 1E-08 61.1 8.5 77 66-150 21-100 (305)
238 KOG3178 Hydroxyindole-O-methyl 97.5 0.00035 7.6E-09 62.3 7.7 148 66-246 178-331 (342)
239 KOG1269 SAM-dependent methyltr 97.5 0.00023 4.9E-09 64.6 6.5 100 63-185 108-213 (364)
240 PF05971 Methyltransf_10: Prot 97.5 0.00048 1E-08 60.8 8.3 82 66-151 103-186 (299)
241 KOG2730 Methylase [General fun 97.5 7.5E-05 1.6E-09 62.4 3.0 60 65-132 94-154 (263)
242 PF01739 CheR: CheR methyltran 97.5 2.3E-05 5E-10 65.2 -0.3 109 66-187 32-175 (196)
243 PF04816 DUF633: Family of unk 97.4 0.00075 1.6E-08 56.6 8.4 115 69-204 1-116 (205)
244 PRK11760 putative 23S rRNA C24 97.4 0.0011 2.4E-08 59.4 8.9 86 65-180 211-296 (357)
245 PF07091 FmrO: Ribosomal RNA m 97.3 0.0008 1.7E-08 57.6 7.5 83 47-149 96-178 (251)
246 PF03059 NAS: Nicotianamine sy 97.2 0.0041 8.8E-08 54.4 10.4 106 67-187 122-230 (276)
247 PF07942 N2227: N2227-like pro 97.2 0.0033 7.3E-08 54.7 9.7 108 66-184 57-199 (270)
248 KOG2198 tRNA cytosine-5-methyl 97.1 0.008 1.7E-07 54.1 11.1 133 63-202 153-317 (375)
249 KOG1562 Spermidine synthase [A 97.0 0.0048 1.1E-07 53.9 9.2 130 67-203 123-252 (337)
250 COG1867 TRM1 N2,N2-dimethylgua 97.0 0.0049 1.1E-07 55.5 9.3 105 67-192 54-160 (380)
251 PF02005 TRM: N2,N2-dimethylgu 97.0 0.0039 8.5E-08 57.0 8.9 105 67-192 51-160 (377)
252 PRK01747 mnmC bifunctional tRN 97.0 0.007 1.5E-07 59.4 11.2 122 66-204 58-219 (662)
253 PF09243 Rsm22: Mitochondrial 97.0 0.0084 1.8E-07 52.5 10.5 43 68-110 36-79 (274)
254 KOG4589 Cell division protein 96.9 0.0073 1.6E-07 49.6 8.6 105 66-187 70-184 (232)
255 PF04672 Methyltransf_19: S-ad 96.8 0.0067 1.5E-07 52.6 8.4 104 67-188 70-191 (267)
256 KOG2352 Predicted spermine/spe 96.7 0.01 2.3E-07 55.2 9.0 103 68-188 51-162 (482)
257 PF01795 Methyltransf_5: MraW 96.7 0.0013 2.9E-08 58.3 3.0 76 66-149 21-100 (310)
258 PF04445 SAM_MT: Putative SAM- 96.6 0.01 2.3E-07 50.5 7.8 80 66-149 76-158 (234)
259 PF07757 AdoMet_MTase: Predict 96.5 0.002 4.4E-08 48.0 2.8 33 66-100 59-91 (112)
260 KOG3987 Uncharacterized conser 96.5 0.00051 1.1E-08 57.1 -0.7 94 66-187 113-207 (288)
261 COG0286 HsdM Type I restrictio 96.5 0.03 6.5E-07 53.1 11.0 116 66-189 187-328 (489)
262 COG2384 Predicted SAM-dependen 96.3 0.021 4.6E-07 48.0 7.9 116 68-203 19-134 (226)
263 PRK11524 putative methyltransf 96.3 0.011 2.3E-07 52.0 6.3 46 64-111 207-252 (284)
264 PF04989 CmcI: Cephalosporin h 96.2 0.017 3.6E-07 48.3 6.9 103 67-185 34-145 (206)
265 COG0275 Predicted S-adenosylme 96.2 0.018 3.9E-07 50.6 7.2 75 66-148 24-102 (314)
266 PRK13699 putative methylase; P 96.2 0.016 3.4E-07 49.4 6.7 46 65-112 163-208 (227)
267 PF01861 DUF43: Protein of unk 96.2 0.21 4.5E-06 42.7 13.2 122 66-205 45-171 (243)
268 COG1063 Tdh Threonine dehydrog 96.1 0.041 8.9E-07 49.8 9.4 96 68-187 171-269 (350)
269 cd08283 FDH_like_1 Glutathione 96.1 0.039 8.5E-07 50.3 9.4 114 66-188 185-307 (386)
270 KOG2671 Putative RNA methylase 96.1 0.0075 1.6E-07 53.8 4.1 115 64-188 207-355 (421)
271 KOG1596 Fibrillarin and relate 96.0 0.025 5.5E-07 48.2 7.1 104 65-186 156-260 (317)
272 PF01555 N6_N4_Mtase: DNA meth 96.0 0.013 2.9E-07 48.7 5.3 39 66-106 192-230 (231)
273 COG3129 Predicted SAM-dependen 96.0 0.0071 1.5E-07 51.2 3.4 121 19-151 35-162 (292)
274 PF01234 NNMT_PNMT_TEMT: NNMT/ 95.9 0.013 2.8E-07 50.8 4.9 114 66-187 57-199 (256)
275 COG1064 AdhP Zn-dependent alco 95.7 0.11 2.4E-06 46.7 10.1 92 66-188 167-260 (339)
276 COG1189 Predicted rRNA methyla 95.7 0.063 1.4E-06 45.7 8.0 111 65-201 79-190 (245)
277 PRK11524 putative methyltransf 95.6 0.021 4.5E-07 50.2 5.2 72 121-193 7-86 (284)
278 KOG1501 Arginine N-methyltrans 95.6 0.025 5.5E-07 52.1 5.7 57 66-128 67-123 (636)
279 COG3897 Predicted methyltransf 95.5 0.05 1.1E-06 45.0 6.7 69 66-148 80-148 (218)
280 COG4301 Uncharacterized conser 95.5 0.14 3.1E-06 43.9 9.5 110 66-194 79-200 (321)
281 KOG2352 Predicted spermine/spe 95.3 0.029 6.2E-07 52.3 5.0 132 64-202 294-433 (482)
282 COG5459 Predicted rRNA methyla 95.2 0.029 6.3E-07 50.4 4.8 108 68-189 116-227 (484)
283 KOG2793 Putative N2,N2-dimethy 95.1 0.41 9E-06 41.2 11.4 123 67-200 88-212 (248)
284 PF00107 ADH_zinc_N: Zinc-bind 95.1 0.041 8.9E-07 41.8 4.8 89 75-188 1-90 (130)
285 cd00315 Cyt_C5_DNA_methylase C 94.8 0.17 3.7E-06 44.3 8.4 74 68-155 2-75 (275)
286 PF11599 AviRa: RRNA methyltra 94.6 0.071 1.5E-06 44.8 5.2 119 67-189 53-215 (246)
287 KOG2798 Putative trehalase [Ca 94.5 0.28 6.1E-06 43.5 8.8 36 65-102 150-185 (369)
288 COG4798 Predicted methyltransf 94.4 0.14 3E-06 42.5 6.3 111 66-186 49-165 (238)
289 PRK13699 putative methylase; P 94.3 0.13 2.8E-06 43.7 6.4 80 123-204 2-88 (227)
290 PF02254 TrkA_N: TrkA-N domain 94.2 0.61 1.3E-05 34.6 9.3 99 74-197 4-106 (116)
291 PLN02668 indole-3-acetate carb 94.0 0.34 7.4E-06 44.5 8.7 88 67-155 65-175 (386)
292 KOG1253 tRNA methyltransferase 93.8 0.11 2.3E-06 48.7 5.0 106 66-189 110-219 (525)
293 PF11968 DUF3321: Putative met 93.6 0.11 2.5E-06 43.6 4.6 88 67-189 53-151 (219)
294 PHA01634 hypothetical protein 93.4 0.22 4.9E-06 38.4 5.5 44 66-110 29-72 (156)
295 PF00145 DNA_methylase: C-5 cy 93.1 0.34 7.3E-06 42.6 7.2 120 68-205 2-135 (335)
296 PF05711 TylF: Macrocin-O-meth 92.9 0.18 4E-06 43.4 4.8 106 67-185 76-210 (248)
297 PRK09424 pntA NAD(P) transhydr 92.8 0.85 1.8E-05 43.5 9.6 42 65-107 164-206 (509)
298 KOG0024 Sorbitol dehydrogenase 92.6 1.3 2.8E-05 39.6 9.8 99 65-187 169-273 (354)
299 PF03141 Methyltransf_29: Puta 92.5 0.37 8E-06 45.4 6.6 112 67-203 367-482 (506)
300 cd08254 hydroxyacyl_CoA_DH 6-h 92.1 1.2 2.6E-05 39.0 9.4 96 66-187 166-263 (338)
301 PRK09880 L-idonate 5-dehydroge 92.0 1.7 3.7E-05 38.7 10.3 95 66-187 170-266 (343)
302 TIGR00675 dcm DNA-methyltransf 91.9 2 4.3E-05 38.3 10.5 120 69-205 1-133 (315)
303 KOG3201 Uncharacterized conser 91.9 0.087 1.9E-06 42.4 1.5 111 67-189 31-142 (201)
304 PF03721 UDPG_MGDP_dh_N: UDP-g 91.9 0.5 1.1E-05 38.8 6.1 109 69-188 3-121 (185)
305 TIGR00497 hsdM type I restrict 91.5 2.2 4.7E-05 40.6 10.8 116 67-187 219-355 (501)
306 KOG2651 rRNA adenine N-6-methy 91.3 0.36 7.9E-06 43.9 4.9 41 66-107 154-194 (476)
307 cd08237 ribitol-5-phosphate_DH 90.9 1.8 3.8E-05 38.7 9.2 90 66-186 164-255 (341)
308 PF02636 Methyltransf_28: Puta 90.8 0.27 5.7E-06 42.3 3.6 43 67-109 20-70 (252)
309 cd08230 glucose_DH Glucose deh 90.7 2.2 4.8E-05 38.2 9.7 92 66-186 173-268 (355)
310 PF05206 TRM13: Methyltransfer 90.7 0.43 9.3E-06 41.5 4.7 35 66-100 19-58 (259)
311 KOG4058 Uncharacterized conser 90.6 0.59 1.3E-05 37.2 4.9 60 66-131 73-132 (199)
312 TIGR03451 mycoS_dep_FDH mycoth 90.4 2 4.4E-05 38.5 9.1 97 66-186 177-275 (358)
313 TIGR03366 HpnZ_proposed putati 90.3 2.2 4.7E-05 36.9 9.0 97 66-187 121-218 (280)
314 PF05430 Methyltransf_30: S-ad 90.2 0.4 8.6E-06 36.9 3.7 74 121-205 31-104 (124)
315 COG4121 Uncharacterized conser 90.0 1.2 2.7E-05 38.4 6.9 129 66-204 59-221 (252)
316 KOG2078 tRNA modification enzy 89.8 0.21 4.6E-06 46.0 2.2 66 63-134 247-312 (495)
317 cd05188 MDR Medium chain reduc 89.1 3.7 7.9E-05 34.4 9.3 97 66-188 135-233 (271)
318 TIGR03201 dearomat_had 6-hydro 88.9 3.7 8.1E-05 36.6 9.7 40 66-106 167-207 (349)
319 KOG2912 Predicted DNA methylas 88.9 0.51 1.1E-05 42.1 3.8 57 69-130 106-162 (419)
320 COG0270 Dcm Site-specific DNA 88.8 6.4 0.00014 35.2 11.0 125 66-205 3-140 (328)
321 PRK03659 glutathione-regulated 88.7 3.4 7.3E-05 40.3 9.8 102 68-196 402-507 (601)
322 PRK10309 galactitol-1-phosphat 88.4 3.9 8.4E-05 36.4 9.4 97 66-186 161-259 (347)
323 cd08239 THR_DH_like L-threonin 88.3 4.2 9.1E-05 35.9 9.5 96 66-187 164-262 (339)
324 PF07279 DUF1442: Protein of u 88.1 7.9 0.00017 32.6 10.2 100 66-188 42-149 (218)
325 KOG0822 Protein kinase inhibit 88.0 2.7 5.8E-05 40.1 8.1 100 66-184 368-475 (649)
326 cd08281 liver_ADH_like1 Zinc-d 88.0 3.4 7.3E-05 37.3 8.8 96 67-187 193-290 (371)
327 TIGR01202 bchC 2-desacetyl-2-h 87.9 3.9 8.5E-05 35.9 9.0 84 67-186 146-230 (308)
328 PLN02827 Alcohol dehydrogenase 87.1 4.8 0.0001 36.6 9.2 96 66-186 194-294 (378)
329 PLN02353 probable UDP-glucose 87.0 3.2 7E-05 39.2 8.2 111 68-188 3-128 (473)
330 COG0677 WecC UDP-N-acetyl-D-ma 86.9 2.9 6.4E-05 38.5 7.5 119 67-199 10-145 (436)
331 COG1568 Predicted methyltransf 86.6 4.4 9.4E-05 35.7 8.0 112 66-194 153-267 (354)
332 PF05050 Methyltransf_21: Meth 86.4 1.5 3.3E-05 34.2 5.0 38 71-108 1-42 (167)
333 PRK11064 wecC UDP-N-acetyl-D-m 86.3 2.5 5.4E-05 39.2 7.1 127 68-201 5-134 (415)
334 PLN02740 Alcohol dehydrogenase 86.2 6 0.00013 35.9 9.4 95 66-187 199-300 (381)
335 COG4627 Uncharacterized protei 86.1 1.1 2.3E-05 36.0 3.7 96 66-199 3-98 (185)
336 cd05278 FDH_like Formaldehyde 86.0 6.3 0.00014 34.7 9.3 97 66-186 168-266 (347)
337 PRK10669 putative cation:proto 86.0 6.6 0.00014 37.8 10.0 99 68-194 419-522 (558)
338 TIGR02822 adh_fam_2 zinc-bindi 85.5 11 0.00023 33.6 10.5 88 66-187 166-254 (329)
339 TIGR02819 fdhA_non_GSH formald 85.3 9.8 0.00021 34.9 10.4 109 68-187 188-299 (393)
340 COG3510 CmcI Cephalosporin hyd 85.2 7.1 0.00015 32.5 8.2 100 66-185 70-178 (237)
341 PLN03154 putative allyl alcoho 85.0 8.8 0.00019 34.4 9.8 95 66-186 159-257 (348)
342 PF11899 DUF3419: Protein of u 85.0 2.2 4.7E-05 39.2 5.8 63 118-187 272-334 (380)
343 KOG1227 Putative methyltransfe 84.6 0.72 1.6E-05 40.8 2.4 75 66-150 195-270 (351)
344 PRK10458 DNA cytosine methylas 84.5 22 0.00048 33.6 12.4 39 66-105 88-126 (467)
345 cd08261 Zn_ADH7 Alcohol dehydr 84.5 8.2 0.00018 34.0 9.3 97 66-187 160-258 (337)
346 COG1565 Uncharacterized conser 84.4 3.1 6.6E-05 37.8 6.3 44 68-111 80-131 (370)
347 COG0863 DNA modification methy 83.2 3.4 7.4E-05 35.9 6.2 46 65-112 222-267 (302)
348 PRK03562 glutathione-regulated 82.9 7.4 0.00016 38.2 8.9 100 67-194 401-505 (621)
349 PRK09496 trkA potassium transp 82.4 13 0.00027 34.5 10.0 73 67-153 232-308 (453)
350 PF12692 Methyltransf_17: S-ad 82.3 2.2 4.7E-05 33.9 4.0 101 67-185 30-132 (160)
351 cd08232 idonate-5-DH L-idonate 82.1 13 0.00029 32.6 9.7 95 66-187 166-262 (339)
352 cd08236 sugar_DH NAD(P)-depend 81.8 13 0.00028 32.7 9.5 97 66-187 160-258 (343)
353 cd08285 NADP_ADH NADP(H)-depen 81.7 11 0.00024 33.4 9.1 97 66-186 167-265 (351)
354 PF11312 DUF3115: Protein of u 81.1 4 8.7E-05 36.3 5.7 116 66-186 87-241 (315)
355 TIGR02818 adh_III_F_hyde S-(hy 80.6 14 0.00031 33.3 9.4 41 66-106 186-227 (368)
356 cd05290 LDH_3 A subgroup of L- 80.4 39 0.00085 30.0 11.9 123 69-203 2-135 (307)
357 KOG2782 Putative SAM dependent 80.4 1 2.3E-05 38.1 1.7 44 66-109 44-87 (303)
358 cd08295 double_bond_reductase_ 80.2 19 0.00042 31.7 10.0 95 66-186 152-250 (338)
359 KOG1098 Putative SAM-dependent 80.1 1.8 4E-05 41.9 3.4 34 66-99 45-79 (780)
360 cd05285 sorbitol_DH Sorbitol d 79.1 18 0.0004 31.9 9.5 97 67-187 164-265 (343)
361 COG1062 AdhC Zn-dependent alco 78.4 23 0.00049 32.2 9.5 95 65-186 185-284 (366)
362 cd08238 sorbose_phosphate_red 78.2 18 0.0004 33.1 9.5 104 66-186 176-287 (410)
363 cd08300 alcohol_DH_class_III c 77.7 21 0.00045 32.1 9.6 96 66-186 187-287 (368)
364 cd08234 threonine_DH_like L-th 77.5 24 0.00052 30.8 9.7 94 66-186 160-256 (334)
365 cd08245 CAD Cinnamyl alcohol d 77.5 33 0.00071 29.9 10.6 94 66-188 163-257 (330)
366 cd05281 TDH Threonine dehydrog 77.5 23 0.00051 31.2 9.7 96 67-187 165-262 (341)
367 cd08278 benzyl_alcohol_DH Benz 77.5 23 0.00051 31.7 9.8 94 66-186 187-284 (365)
368 KOG4174 Uncharacterized conser 77.4 46 0.001 28.9 10.7 136 65-206 56-210 (282)
369 TIGR00027 mthyl_TIGR00027 meth 77.4 7.6 0.00017 33.6 6.3 106 67-188 83-198 (260)
370 PRK15057 UDP-glucose 6-dehydro 77.3 21 0.00046 32.8 9.5 122 69-202 3-133 (388)
371 PLN02819 lysine-ketoglutarate 77.1 47 0.001 34.7 12.7 113 66-204 569-696 (1042)
372 PRK08293 3-hydroxybutyryl-CoA 77.0 34 0.00074 29.7 10.4 102 68-185 5-118 (287)
373 cd08293 PTGR2 Prostaglandin re 77.0 28 0.0006 30.7 10.0 94 67-186 156-253 (345)
374 cd08286 FDH_like_ADH2 formalde 76.8 22 0.00047 31.4 9.3 95 68-186 169-265 (345)
375 cd08277 liver_alcohol_DH_like 76.8 23 0.00049 31.8 9.5 41 66-106 185-226 (365)
376 COG0287 TyrA Prephenate dehydr 76.7 14 0.00029 32.5 7.7 90 67-184 4-95 (279)
377 PRK05396 tdh L-threonine 3-deh 76.3 23 0.0005 31.2 9.3 96 68-187 166-263 (341)
378 cd08301 alcohol_DH_plants Plan 76.2 22 0.00048 31.9 9.3 41 66-106 188-229 (369)
379 KOG0023 Alcohol dehydrogenase, 76.1 11 0.00024 33.9 6.8 95 66-187 182-279 (360)
380 KOG3924 Putative protein methy 75.6 5.6 0.00012 36.5 5.0 109 64-185 191-306 (419)
381 COG1748 LYS9 Saccharopine dehy 75.5 30 0.00064 32.0 9.8 55 68-132 3-58 (389)
382 PLN02586 probable cinnamyl alc 75.3 27 0.00058 31.4 9.6 93 66-186 184-277 (360)
383 cd00300 LDH_like L-lactate deh 75.0 54 0.0012 28.9 11.2 117 71-200 3-128 (300)
384 PF01210 NAD_Gly3P_dh_N: NAD-d 74.9 6.7 0.00014 31.0 4.9 101 69-187 2-103 (157)
385 COG5379 BtaA S-adenosylmethion 74.4 11 0.00023 33.6 6.2 48 66-115 64-111 (414)
386 PLN02702 L-idonate 5-dehydroge 74.3 32 0.00069 30.7 9.8 98 66-187 182-285 (364)
387 PRK07502 cyclohexadienyl dehyd 74.3 19 0.0004 31.8 8.1 90 68-186 8-99 (307)
388 COG1004 Ugd Predicted UDP-gluc 74.2 23 0.0005 32.8 8.6 123 69-202 3-136 (414)
389 PTZ00357 methyltransferase; Pr 74.1 23 0.0005 35.3 8.9 103 67-182 702-830 (1072)
390 KOG1099 SAM-dependent methyltr 74.0 1.9 4.1E-05 36.8 1.6 117 67-202 43-182 (294)
391 cd08265 Zn_ADH3 Alcohol dehydr 73.9 38 0.00082 30.6 10.3 98 67-187 205-307 (384)
392 PF02826 2-Hacid_dh_C: D-isome 73.7 24 0.00053 28.4 8.1 91 66-187 36-127 (178)
393 cd08255 2-desacetyl-2-hydroxye 73.7 40 0.00087 28.5 9.9 90 66-187 98-190 (277)
394 TIGR02825 B4_12hDH leukotriene 73.7 35 0.00076 29.8 9.7 94 66-186 139-236 (325)
395 cd08233 butanediol_DH_like (2R 73.2 28 0.00062 30.8 9.2 98 66-187 173-272 (351)
396 cd05284 arabinose_DH_like D-ar 73.2 32 0.0007 30.1 9.4 97 67-187 169-266 (340)
397 TIGR03026 NDP-sugDHase nucleot 73.1 30 0.00066 31.9 9.5 108 69-187 3-120 (411)
398 PRK09496 trkA potassium transp 72.7 23 0.0005 32.7 8.7 93 69-187 3-99 (453)
399 PRK10206 putative oxidoreducta 72.7 25 0.00054 31.6 8.6 70 68-154 3-76 (344)
400 KOG2920 Predicted methyltransf 71.8 3.3 7.1E-05 36.3 2.6 36 66-102 117-152 (282)
401 PF02153 PDH: Prephenate dehyd 71.4 17 0.00036 31.3 6.9 93 79-201 1-94 (258)
402 cd08231 MDR_TM0436_like Hypoth 71.1 42 0.00092 29.8 9.8 96 67-187 179-280 (361)
403 PF01408 GFO_IDH_MocA: Oxidore 70.8 39 0.00083 24.7 10.5 106 68-204 2-113 (120)
404 TIGR00692 tdh L-threonine 3-de 70.0 45 0.00096 29.4 9.6 95 68-187 164-261 (340)
405 KOG0821 Predicted ribosomal RN 69.0 9.3 0.0002 32.6 4.5 59 65-131 50-108 (326)
406 PRK09422 ethanol-active dehydr 68.3 53 0.0012 28.7 9.7 95 66-186 163-260 (338)
407 PRK06223 malate dehydrogenase; 68.3 83 0.0018 27.6 12.4 123 68-201 4-133 (307)
408 KOG2360 Proliferation-associat 67.7 13 0.00029 34.1 5.6 61 66-132 214-275 (413)
409 cd08287 FDH_like_ADH3 formalde 67.6 45 0.00098 29.3 9.2 93 68-187 172-268 (345)
410 COG0604 Qor NADPH:quinone redu 66.6 59 0.0013 29.0 9.7 97 66-188 143-242 (326)
411 KOG0022 Alcohol dehydrogenase, 66.4 16 0.00035 32.8 5.7 42 66-107 193-235 (375)
412 cd08242 MDR_like Medium chain 66.2 78 0.0017 27.4 10.3 89 66-187 156-245 (319)
413 PLN02178 cinnamyl-alcohol dehy 66.1 46 0.00099 30.2 9.0 93 66-187 179-273 (375)
414 cd08279 Zn_ADH_class_III Class 65.9 59 0.0013 29.0 9.6 94 67-186 184-281 (363)
415 PRK06130 3-hydroxybutyryl-CoA 65.8 46 0.00099 29.2 8.7 104 68-187 6-115 (311)
416 PRK05808 3-hydroxybutyryl-CoA 65.3 48 0.001 28.7 8.6 103 68-189 5-120 (282)
417 PF06859 Bin3: Bicoid-interact 65.3 4.1 8.9E-05 30.6 1.6 20 168-187 25-44 (110)
418 PRK07417 arogenate dehydrogena 65.1 40 0.00088 29.2 8.1 83 69-183 3-87 (279)
419 TIGR01771 L-LDH-NAD L-lactate 64.8 1E+02 0.0022 27.3 10.7 118 72-201 2-127 (299)
420 PF07101 DUF1363: Protein of u 64.6 2.4 5.2E-05 30.9 0.2 18 69-86 6-23 (124)
421 cd00401 AdoHcyase S-adenosyl-L 64.2 52 0.0011 30.7 8.9 86 66-187 202-289 (413)
422 PRK15182 Vi polysaccharide bio 64.1 41 0.00088 31.4 8.3 106 68-187 8-120 (425)
423 PRK09260 3-hydroxybutyryl-CoA 64.0 53 0.0012 28.5 8.7 103 68-188 3-118 (288)
424 cd08294 leukotriene_B4_DH_like 64.0 73 0.0016 27.6 9.7 94 66-186 144-240 (329)
425 KOG1269 SAM-dependent methyltr 63.8 11 0.00025 34.3 4.5 116 66-187 181-313 (364)
426 PRK15001 SAM-dependent 23S rib 63.6 76 0.0016 29.2 9.8 108 68-201 47-156 (378)
427 cd05279 Zn_ADH1 Liver alcohol 63.1 67 0.0015 28.7 9.5 95 67-186 185-284 (365)
428 PLN02514 cinnamyl-alcohol dehy 63.0 92 0.002 27.8 10.3 93 66-186 181-274 (357)
429 PRK07102 short chain dehydroge 62.6 51 0.0011 27.3 8.1 58 68-132 3-62 (243)
430 COG5379 BtaA S-adenosylmethion 62.4 26 0.00056 31.3 6.1 77 94-188 291-367 (414)
431 PRK10537 voltage-gated potassi 62.3 42 0.00091 31.0 8.0 100 68-197 242-346 (393)
432 PRK05225 ketol-acid reductoiso 62.2 20 0.00042 33.9 5.7 90 66-187 36-131 (487)
433 cd08263 Zn_ADH10 Alcohol dehyd 61.8 70 0.0015 28.5 9.3 95 67-187 189-287 (367)
434 cd08291 ETR_like_1 2-enoyl thi 61.7 74 0.0016 27.7 9.3 93 68-186 146-241 (324)
435 cd08256 Zn_ADH2 Alcohol dehydr 61.6 66 0.0014 28.4 9.1 92 68-186 178-273 (350)
436 PF04072 LCM: Leucine carboxyl 61.6 9.5 0.00021 31.0 3.3 60 68-131 81-140 (183)
437 cd08284 FDH_like_2 Glutathione 61.2 81 0.0017 27.6 9.5 97 67-187 169-266 (344)
438 cd08241 QOR1 Quinone oxidoredu 60.8 83 0.0018 26.7 9.3 96 66-187 140-238 (323)
439 cd08243 quinone_oxidoreductase 60.8 1E+02 0.0023 26.2 10.0 93 66-186 143-237 (320)
440 cd08282 PFDH_like Pseudomonas 60.7 88 0.0019 28.1 9.8 106 67-186 178-284 (375)
441 PRK13304 L-aspartate dehydroge 60.0 1.1E+02 0.0023 26.4 9.8 34 68-103 3-41 (265)
442 PLN02494 adenosylhomocysteinas 59.8 62 0.0013 30.8 8.6 88 66-188 254-342 (477)
443 TIGR00518 alaDH alanine dehydr 59.0 69 0.0015 29.2 8.8 38 67-105 168-206 (370)
444 cd08240 6_hydroxyhexanoate_dh_ 58.2 82 0.0018 27.7 9.1 94 66-186 176-273 (350)
445 PRK10083 putative oxidoreducta 58.1 1.3E+02 0.0028 26.3 10.2 41 66-106 161-203 (339)
446 PF01555 N6_N4_Mtase: DNA meth 58.1 7.2 0.00016 32.0 2.1 26 167-192 36-61 (231)
447 cd08260 Zn_ADH6 Alcohol dehydr 57.8 97 0.0021 27.2 9.5 94 67-186 167-263 (345)
448 PF01358 PARP_regulatory: Poly 57.1 10 0.00022 33.4 2.8 35 66-100 59-97 (294)
449 COG0059 IlvC Ketol-acid reduct 57.1 81 0.0018 28.3 8.4 90 66-187 18-109 (338)
450 PF03686 UPF0146: Uncharacteri 57.1 25 0.00054 27.1 4.6 88 66-188 14-103 (127)
451 TIGR02817 adh_fam_1 zinc-bindi 56.9 1E+02 0.0023 26.7 9.5 96 67-187 150-247 (336)
452 PRK15076 alpha-galactosidase; 56.9 1.3E+02 0.0028 28.1 10.4 44 68-111 3-52 (431)
453 PF11899 DUF3419: Protein of u 56.9 34 0.00074 31.5 6.3 46 66-113 36-81 (380)
454 PRK13302 putative L-aspartate 56.8 1E+02 0.0022 26.8 9.1 105 68-204 8-116 (271)
455 PRK06949 short chain dehydroge 56.6 88 0.0019 26.0 8.6 58 66-131 9-68 (258)
456 PF03446 NAD_binding_2: NAD bi 55.5 1E+02 0.0022 24.3 8.4 104 69-204 4-112 (163)
457 KOG2811 Uncharacterized conser 55.2 22 0.00047 32.5 4.6 36 67-102 184-222 (420)
458 cd08297 CAD3 Cinnamyl alcohol 54.8 1.3E+02 0.0028 26.3 9.7 97 66-187 166-265 (341)
459 COG0079 HisC Histidinol-phosph 54.7 1.2E+02 0.0027 27.5 9.6 111 67-197 75-191 (356)
460 PRK07530 3-hydroxybutyryl-CoA 54.4 1.2E+02 0.0026 26.4 9.3 105 68-189 6-121 (292)
461 cd05292 LDH_2 A subgroup of L- 54.4 1.5E+02 0.0033 26.1 11.9 121 69-201 3-130 (308)
462 PRK08410 2-hydroxyacid dehydro 54.2 71 0.0015 28.4 7.9 87 66-187 145-232 (311)
463 PF02558 ApbA: Ketopantoate re 54.2 94 0.002 23.7 7.8 51 140-201 65-115 (151)
464 PRK07326 short chain dehydroge 53.9 68 0.0015 26.3 7.4 57 66-131 6-64 (237)
465 PRK08213 gluconate 5-dehydroge 53.1 1.1E+02 0.0024 25.6 8.6 59 66-132 12-72 (259)
466 PRK06274 indolepyruvate oxidor 52.7 1.2E+02 0.0026 24.6 8.6 69 88-188 29-97 (197)
467 TIGR00561 pntA NAD(P) transhyd 52.7 1.1E+02 0.0024 29.3 9.2 40 66-106 164-204 (511)
468 COG0673 MviM Predicted dehydro 52.6 1.6E+02 0.0035 25.8 11.6 72 67-154 4-79 (342)
469 cd08296 CAD_like Cinnamyl alco 52.4 1.4E+02 0.003 26.1 9.5 94 66-187 164-259 (333)
470 PF03807 F420_oxidored: NADP o 52.4 44 0.00096 23.4 5.2 81 72-184 5-91 (96)
471 PF08468 MTS_N: Methyltransfer 52.4 17 0.00037 29.0 3.2 54 141-203 68-121 (155)
472 PRK08945 putative oxoacyl-(acy 52.1 73 0.0016 26.4 7.3 59 66-131 12-72 (247)
473 PF10237 N6-adenineMlase: Prob 51.9 1.2E+02 0.0027 24.2 10.9 96 67-188 27-124 (162)
474 PRK07819 3-hydroxybutyryl-CoA 51.6 70 0.0015 28.0 7.3 102 68-188 7-122 (286)
475 PRK00066 ldh L-lactate dehydro 51.6 1.8E+02 0.0038 25.9 13.0 122 66-200 6-135 (315)
476 PRK07904 short chain dehydroge 51.2 90 0.0019 26.3 7.8 77 67-150 9-95 (253)
477 PHA03108 poly(A) polymerase sm 51.0 24 0.00053 31.0 4.1 35 66-100 61-99 (300)
478 PRK07454 short chain dehydroge 50.8 1.1E+02 0.0024 25.1 8.3 57 67-131 7-65 (241)
479 PRK07066 3-hydroxybutyryl-CoA 50.5 1.1E+02 0.0024 27.4 8.4 102 68-187 9-119 (321)
480 PRK08251 short chain dehydroge 50.5 1.2E+02 0.0025 25.1 8.4 60 67-132 3-64 (248)
481 cd08266 Zn_ADH_like1 Alcohol d 50.4 73 0.0016 27.4 7.3 95 66-187 167-265 (342)
482 TIGR01761 thiaz-red thiazoliny 50.4 1.7E+02 0.0038 26.4 9.8 37 66-102 3-41 (343)
483 PF03514 GRAS: GRAS domain fam 50.3 1.7E+02 0.0037 26.7 9.8 48 65-112 110-168 (374)
484 PF07991 IlvN: Acetohydroxy ac 50.3 76 0.0016 25.6 6.6 90 66-187 4-95 (165)
485 PRK11579 putative oxidoreducta 50.0 1.9E+02 0.0041 25.8 10.7 68 68-154 6-76 (346)
486 TIGR00872 gnd_rel 6-phosphoglu 49.8 87 0.0019 27.4 7.7 88 69-186 3-92 (298)
487 PRK06035 3-hydroxyacyl-CoA deh 49.8 1.7E+02 0.0038 25.3 10.0 101 68-187 5-121 (291)
488 PF00056 Ldh_1_N: lactate/mala 49.6 1.2E+02 0.0026 23.4 12.4 122 69-201 3-132 (141)
489 PLN02780 ketoreductase/ oxidor 48.9 92 0.002 27.5 7.8 60 66-131 53-114 (320)
490 PRK08703 short chain dehydroge 48.8 88 0.0019 25.8 7.3 58 66-130 6-65 (239)
491 PRK12384 sorbitol-6-phosphate 48.2 1.2E+02 0.0027 25.2 8.2 58 68-131 4-63 (259)
492 PF04378 RsmJ: Ribosomal RNA s 47.2 65 0.0014 27.8 6.2 117 70-203 62-182 (245)
493 COG2813 RsmC 16S RNA G1207 met 47.1 94 0.002 27.7 7.3 60 141-209 36-95 (300)
494 cd05297 GH4_alpha_glucosidase_ 46.6 2.5E+02 0.0053 26.1 11.5 121 69-198 3-156 (423)
495 PF03269 DUF268: Caenorhabditi 46.4 19 0.00042 29.1 2.6 31 68-99 4-34 (177)
496 PRK07680 late competence prote 46.1 89 0.0019 26.9 7.1 90 69-187 3-96 (273)
497 PRK09489 rsmC 16S ribosomal RN 45.6 45 0.00097 30.2 5.2 55 140-203 74-128 (342)
498 cd08252 AL_MDR Arginate lyase 45.5 2E+02 0.0044 24.8 9.6 98 66-188 150-249 (336)
499 COG1255 Uncharacterized protei 45.5 1.4E+02 0.0029 22.9 7.6 68 66-154 14-82 (129)
500 PRK06522 2-dehydropantoate 2-r 45.4 2E+02 0.0043 24.7 10.6 109 68-200 2-113 (304)
No 1
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=100.00 E-value=6.8e-45 Score=302.24 Aligned_cols=188 Identities=28% Similarity=0.555 Sum_probs=158.9
Q ss_pred CCCCccccCCCCCCCCCccCCCCCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc
Q 025492 43 SHVDYSLHYPHFFPPADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQN 122 (252)
Q Consensus 43 ~~~~w~~~f~~~~~~~~~~~~~~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n 122 (252)
..++|.++|+.. .+++||||||.|.+++.+|..+|+.+|+|||++...+..|.+++... +++|
T Consensus 6 ~~~~~~~~f~~~-----------~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~------~l~N 68 (195)
T PF02390_consen 6 EPLDWQEIFGND-----------NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKR------GLKN 68 (195)
T ss_dssp CTTCHHHHHTSC-----------CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHH------TTSS
T ss_pred CccCHHHHcCCC-----------CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhh------cccc
Confidence 457999999965 67999999999999999999999999999999999999998888765 8999
Q ss_pred EEEEeCCcccccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhc
Q 025492 123 ISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLEN 202 (252)
Q Consensus 123 v~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~ 202 (252)
+.++++||...+...++++++|.|+++|||||+|++|+|||++++.|++.++++|+|||.|+++||+++|+++|.+.+..
T Consensus 69 v~~~~~da~~~l~~~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~ 148 (195)
T PF02390_consen 69 VRFLRGDARELLRRLFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEE 148 (195)
T ss_dssp EEEEES-CTTHHHHHSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHH
T ss_pred eEEEEccHHHHHhhcccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 99999999987888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCCcccccc-cccccCccccCCCCCCHHHHHHHHcCCCeEEEEEEec
Q 025492 203 -HPMFEALTK-EELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRRI 248 (252)
Q Consensus 203 -~~~~~~~~~-~~~~~~p~~~~~~~~t~~e~~~~~~G~~i~~~~~~k~ 248 (252)
++.|+.... ..+...|..+ ..+.|+||+++++.|+.||+++|+|+
T Consensus 149 ~~~~f~~~~~~~~~~~~~~~~-~~~~T~yE~k~~~~G~~i~~~~f~k~ 195 (195)
T PF02390_consen 149 SHPGFENIEESDDLHESPFDD-DYIPTKYERKWLAEGKPIYRLIFKKV 195 (195)
T ss_dssp HSTTEEEE-TESSGGCSCCCT-TCCSSHHHHHHHHTTSS-EEEEEEE-
T ss_pred cCcCeEEcccCcccccCCCCC-CCCCCHHHHHHHHCCCCCEEEEEEEC
Confidence 688887742 2333334222 47899999999999999999999985
No 2
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=100.00 E-value=1.8e-45 Score=297.47 Aligned_cols=247 Identities=62% Similarity=1.060 Sum_probs=227.1
Q ss_pred CCccCCCCCcccCcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccCCCCCceEEEEcCcccHHH
Q 025492 1 MLEQETNPTISKSTGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQVNCSKKIQFADIGCGFGGLL 80 (252)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~np~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~vLDIGcG~G~~~ 80 (252)
|-..+-+...+++..+|+|||||+|+|+||++|+++.||..|+.+||+..|+...... ....-+.|||||.|.++
T Consensus 1 ~~aet~~~~~~e~~~~pqKr~YRQRAHsNP~sDh~l~yPvsP~~mDWS~~yp~f~~~~-----~~kvefaDIGCGyGGLl 75 (249)
T KOG3115|consen 1 MEAETKNVAGSESAGLPQKRYYRQRAHSNPLSDHTLEYPVSPQEMDWSKYYPDFRRAL-----NKKVEFADIGCGYGGLL 75 (249)
T ss_pred CchhhccccccccCCCcHHHHHHHHhhcCCCccCcccCCCChHhCcHHHhhhhhhhhc-----cccceEEeeccCccchh
Confidence 3345566778888999999999999999999999999999999999999999875332 13467999999999999
Q ss_pred HHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhc-CCCCcccEEEEeCCcccccCccCCCCcccEEEEeCCCCcccccc
Q 025492 81 ISLSTLFPEVLMIGMELRDKVTEYVKERILALRVS-NPGQYQNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKN 159 (252)
Q Consensus 81 ~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~-~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h 159 (252)
+.|+..+|+..++|+||....-++.++++.++|.. ....+.|+.+++.++..+++++|..+.++.+++.||||++|++.
T Consensus 76 v~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLskmff~fpdpHfk~~k 155 (249)
T KOG3115|consen 76 MKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSKMFFLFPDPHFKARK 155 (249)
T ss_pred hhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccccceeecCChhHhhhh
Confidence 99999999999999999999999999999998754 34458999999999999999999999999999999999999999
Q ss_pred ccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcccccccccccCccccCCCCCCHHHHHHHHcCCC
Q 025492 160 HRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQ 239 (252)
Q Consensus 160 ~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~t~~e~~~~~~G~~ 239 (252)
++.|+++..++.+++-+|++||.++..||+.++.+||...++++|.|+..+.++...+|....+...|++++++.++|..
T Consensus 156 hk~rii~~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~e~hplfe~lt~ee~~~d~~v~~~~~~teeg~kv~r~~g~ 235 (249)
T KOG3115|consen 156 HKWRIITSTLLSEYAYVLREGGILYTITDVKELHEWMVKHLEEHPLFERLTEEEEENDPCVELLSNATEEGKKVARNGGK 235 (249)
T ss_pred ccceeechhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHHHhCcHhhhcchhhhcCCcchhhhhhhhhhcccccccCCc
Confidence 99999999999999999999999999999999999999999999999999988888888777788999999999999999
Q ss_pred eEEEEEEecCCCC
Q 025492 240 TFQAVFRRIVPTS 252 (252)
Q Consensus 240 i~~~~~~k~~~~~ 252 (252)
.|..+|++...|+
T Consensus 236 ~f~a~f~r~~~~~ 248 (249)
T KOG3115|consen 236 KFVAVFRRIPNPA 248 (249)
T ss_pred eeeeeeeeccCCC
Confidence 9999999998875
No 3
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=100.00 E-value=1.3e-44 Score=305.35 Aligned_cols=218 Identities=26% Similarity=0.409 Sum_probs=180.4
Q ss_pred CCCCcccccccCCCCCCCCCCCCCCCCCC--CCCccccCCCCCCCCCccCCCCCceEEEEcCcccHHHHHHHHHCCCCeE
Q 025492 15 GLPRKRFYRARAHSNPLSDSHFPVPISPS--HVDYSLHYPHFFPPADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLM 92 (252)
Q Consensus 15 ~~~~~~~~~~r~~~np~~~~~~~~~~~~~--~~~w~~~f~~~~~~~~~~~~~~~~~vLDIGcG~G~~~~~lA~~~p~~~~ 92 (252)
...+++....+++.+++.+....++.++. ..+|.++|++. ..|++||||||.|.+++.+|+++|+.+|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~----------~~pi~lEIGfG~G~~l~~~A~~nP~~nf 75 (227)
T COG0220 6 SFVRRRLRLTKAQKNALEDNWPRLGLDPQEEPGDWSALFGNN----------NAPIVLEIGFGMGEFLVEMAKKNPEKNF 75 (227)
T ss_pred hhhhhhccccHHHHHHHHhcccccCCChhhccchHHHHhCCC----------CCcEEEEECCCCCHHHHHHHHHCCCCCE
Confidence 34455555678888888777555555554 35899999865 2579999999999999999999999999
Q ss_pred EEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHH
Q 025492 93 IGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDE 172 (252)
Q Consensus 93 iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~ 172 (252)
+|||++...+..|.+++.+. +++||++++.||.+.++.+++++++|.|+++|||||+|+||+|||++++.|++.
T Consensus 76 iGiEi~~~~v~~~l~k~~~~------~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~ 149 (227)
T COG0220 76 LGIEIRVPGVAKALKKIKEL------GLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKL 149 (227)
T ss_pred EEEEEehHHHHHHHHHHHHc------CCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCCCCCCccccccccCCHHHHHH
Confidence 99999999999998887664 788999999999988887777789999999999999999999999999999999
Q ss_pred HHHhhcCCcEEEEEeCchHHHHHHHHHHhcC-CCcccccccccccCccccCCCCCCHHHHHHHHcCCCeEEEEEEecC
Q 025492 173 YAYVLGVGGIIYTITDVEELGDWMRSCLENH-PMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRRIV 249 (252)
Q Consensus 173 ~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~t~~e~~~~~~G~~i~~~~~~k~~ 249 (252)
++++|+|||.|+++||+++|+++|+.....+ +.+...+.+.+...+.. ..++.|+||+++.+.|+.||++.|+++.
T Consensus 150 ~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~T~yE~k~~~~g~~i~~l~~~~~~ 226 (227)
T COG0220 150 YARKLKPGGVLHFATDNEEYFEWMMLEVLEHPPFLKFESEDLHYNLPPP-DNNPVTEYEQKFRRLGHPVYDLEFIKKK 226 (227)
T ss_pred HHHHccCCCEEEEEecCHHHHHHHHHHHHhcchhhhccccccccccccc-cCCCCcHHHHHHHhCCCceEEEEEEecC
Confidence 9999999999999999999999966666555 33444443333311211 1278899999999999999999999874
No 4
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=100.00 E-value=8.4e-38 Score=259.96 Aligned_cols=187 Identities=30% Similarity=0.527 Sum_probs=161.5
Q ss_pred CCCccccCCCCCCCCCccCCCCCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccE
Q 025492 44 HVDYSLHYPHFFPPADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNI 123 (252)
Q Consensus 44 ~~~w~~~f~~~~~~~~~~~~~~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv 123 (252)
+.+|.++|+.. .+++||||||+|.++..+|+++|+.+|+|||+++.+++.|.+++... ++.|+
T Consensus 6 ~~~~~~~f~~~-----------~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~------~l~ni 68 (194)
T TIGR00091 6 KPDFATVFGNK-----------APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKL------GLKNL 68 (194)
T ss_pred CCCHHHHhCCC-----------CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHh------CCCCE
Confidence 35798899843 56999999999999999999999999999999999999998877553 67899
Q ss_pred EEEeCCcccccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcC
Q 025492 124 SVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENH 203 (252)
Q Consensus 124 ~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~ 203 (252)
+++++|+.+.+...++++++|.|+++|||||++++|+++|++++.++++++++|||||.|++.||+..|+++|.+.+..+
T Consensus 69 ~~i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~ 148 (194)
T TIGR00091 69 HVLCGDANELLDKFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSEN 148 (194)
T ss_pred EEEccCHHHHHHhhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhC
Confidence 99999997655445667799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccc-cccCccccCCCCCCHHHHHHHHcCCCeEEEEEEec
Q 025492 204 PMFEALTKEE-LEADPVVKLLSSATEEGQKVARNGGQTFQAVFRRI 248 (252)
Q Consensus 204 ~~~~~~~~~~-~~~~p~~~~~~~~t~~e~~~~~~G~~i~~~~~~k~ 248 (252)
+.|+.+.... +...|. ...+..|+||+++++.|+.||+++|+|.
T Consensus 149 ~~f~~~~~~~~~~~~~~-~~~~~~T~~E~~~~~~g~~i~~~~~~~~ 193 (194)
T TIGR00091 149 DLFENTSKSTDLNNSPL-SRPRNMTEYEQRFERLGHPVFDLCFERL 193 (194)
T ss_pred CCeEecccccccCCCcc-cccCcCCHHHHHHHHCCCCeEEEEEEEC
Confidence 8887775432 222221 2224579999999999999999999985
No 5
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=100.00 E-value=3.9e-35 Score=263.79 Aligned_cols=169 Identities=21% Similarity=0.290 Sum_probs=149.8
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
++++||||||+|.+++.+|+++|+.+++|||+++.+++.|.+++.. .+++||+++++|+...+ ..++++++|.
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~------~gL~NV~~i~~DA~~ll-~~~~~~s~D~ 195 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIEL------LNLKNLLIINYDARLLL-ELLPSNSVEK 195 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHH------cCCCcEEEEECCHHHhh-hhCCCCceeE
Confidence 6799999999999999999999999999999999999999887755 37899999999997533 4688999999
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcccccccccccCccccCCCC
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSS 225 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 225 (252)
|+++|||||+|++| ||++++.++++++++|+|||.+++.||+.+|+++|.+.+...+.++... ....+ ..+
T Consensus 196 I~lnFPdPW~KkrH--RRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~~~---~~~~~----~~i 266 (390)
T PRK14121 196 IFVHFPVPWDKKPH--RRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKIEI---KKNAQ----LEV 266 (390)
T ss_pred EEEeCCCCccccch--hhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCceeec---ccCCC----CCC
Confidence 99999999999988 8999999999999999999999999999999999999998887664321 21121 268
Q ss_pred CCHHHHHHHHcCCCeEEEEEEecCC
Q 025492 226 ATEEGQKVARNGGQTFQAVFRRIVP 250 (252)
Q Consensus 226 ~t~~e~~~~~~G~~i~~~~~~k~~~ 250 (252)
.|+||++|++.|+.||+++|++...
T Consensus 267 ~TkyE~r~~~~G~~Iy~l~~~~~~~ 291 (390)
T PRK14121 267 SSKYEDRWKKQNKDIYDLRIYNLEE 291 (390)
T ss_pred CCHHHHHHHHCCCCEEEEEEEeCCC
Confidence 8999999999999999999998754
No 6
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=100.00 E-value=1.4e-34 Score=271.43 Aligned_cols=167 Identities=22% Similarity=0.254 Sum_probs=145.1
Q ss_pred CccccCCCCCCCCCccCCCCCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEE
Q 025492 46 DYSLHYPHFFPPADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISV 125 (252)
Q Consensus 46 ~w~~~f~~~~~~~~~~~~~~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~ 125 (252)
+|..+|+.. .+++||||||.|.+++.+|..+|+.+|+|||++...+..|.+++.. .++.|+++
T Consensus 339 ~~eklf~~~-----------~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~------~~l~N~~~ 401 (506)
T PRK01544 339 SKEKLVNEK-----------RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGE------QNITNFLL 401 (506)
T ss_pred CHHHhCCCC-----------CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHH------cCCCeEEE
Confidence 566667643 7899999999999999999999999999999999988888776544 47899999
Q ss_pred EeCCcccccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCC
Q 025492 126 VRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPM 205 (252)
Q Consensus 126 ~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~ 205 (252)
+..|+. .+...|+++++|.|+++|||||+|++|+|||++++.|++.++++|||||.|+++||+.+|+++|++.+.+++.
T Consensus 402 ~~~~~~-~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~~~~ 480 (506)
T PRK01544 402 FPNNLD-LILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQNGN 480 (506)
T ss_pred EcCCHH-HHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhCCC
Confidence 999986 4666789999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccccccccccCccccCCCCCCHHHHHH
Q 025492 206 FEALTKEELEADPVVKLLSSATEEGQKV 233 (252)
Q Consensus 206 ~~~~~~~~~~~~p~~~~~~~~t~~e~~~ 233 (252)
|+....+.+..++. .++.|+||+|.
T Consensus 481 f~~~~~~~~~~~~~---~~~~T~yE~k~ 505 (506)
T PRK01544 481 FEIINKNDYLKPHD---NYVITKYHQKA 505 (506)
T ss_pred eEecccccccCCCC---CCCCchhccCc
Confidence 87765443433332 37889999874
No 7
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.96 E-value=2.7e-28 Score=204.04 Aligned_cols=176 Identities=25% Similarity=0.412 Sum_probs=148.7
Q ss_pred CCCCCCccccCCCCCCCCCccCCCCCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc
Q 025492 41 SPSHVDYSLHYPHFFPPADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY 120 (252)
Q Consensus 41 ~~~~~~w~~~f~~~~~~~~~~~~~~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~ 120 (252)
.+....|..+|+.. ...|||||||+|.++..+|+..|..+++|||+|+.+++.|++++... +.
T Consensus 27 ~~~~~~~~~~~~~~-----------~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~------~~ 89 (202)
T PRK00121 27 SPAPLDWAELFGND-----------APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEE------GL 89 (202)
T ss_pred cCCCCCHHHHcCCC-----------CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHc------CC
Confidence 35667899998863 56899999999999999999999999999999999999999877553 66
Q ss_pred ccEEEEeCCcccccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHH
Q 025492 121 QNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCL 200 (252)
Q Consensus 121 ~nv~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~ 200 (252)
+|+.++++|+.+.++..++++++|.|+++||+||.+..|++++.+...+++++.++|||||.|++.+++..+..++.+.+
T Consensus 90 ~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~ 169 (202)
T PRK00121 90 TNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVL 169 (202)
T ss_pred CCEEEEecCHHHHHHHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHH
Confidence 89999999983345545678899999999999999888888888899999999999999999999999999999999999
Q ss_pred hcCCCcccccccccccCccccCCCCCCHHHHHHHHc
Q 025492 201 ENHPMFEALTKEELEADPVVKLLSSATEEGQKVARN 236 (252)
Q Consensus 201 ~~~~~~~~~~~~~~~~~p~~~~~~~~t~~e~~~~~~ 236 (252)
...++...+..+.+..+| ...+.|+||++|+.+
T Consensus 170 ~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 202 (202)
T PRK00121 170 SAEGGFLVSEAGDYVPRP---EGRPMTEYERKGLRK 202 (202)
T ss_pred HhCcccccccchhhcccC---ccCCCcHHHHHhhcC
Confidence 998865554333333333 347999999999863
No 8
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.77 E-value=4.2e-18 Score=144.68 Aligned_cols=156 Identities=17% Similarity=0.245 Sum_probs=108.5
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
+..|||||||+|.+++.+++..+...++|+|+|+.|++.|++++... +..++.|+.+||. .|| |++++||.
T Consensus 52 g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~------~~~~i~fv~~dAe-~LP--f~D~sFD~ 122 (238)
T COG2226 52 GDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKK------GVQNVEFVVGDAE-NLP--FPDNSFDA 122 (238)
T ss_pred CCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhcc------CccceEEEEechh-hCC--CCCCccCE
Confidence 56899999999999999999998899999999999999999887543 6667999999997 587 99999999
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc--------hHHHHHHHH-HHhcCCCcccccccc--c
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV--------EELGDWMRS-CLENHPMFEALTKEE--L 214 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~--------~~~~~~~~~-~~~~~~~~~~~~~~~--~ 214 (252)
|.+.|.--+... -...|+++.|+|||||++.+..-. .-|..+... .+...+.+..-..+. +
T Consensus 123 vt~~fglrnv~d--------~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~y 194 (238)
T COG2226 123 VTISFGLRNVTD--------IDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEY 194 (238)
T ss_pred EEeeehhhcCCC--------HHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHH
Confidence 998664222211 126999999999999987764311 124445555 444333332211111 1
Q ss_pred ccCccccCCCCCCHHHHHHHHcCCC
Q 025492 215 EADPVVKLLSSATEEGQKVARNGGQ 239 (252)
Q Consensus 215 ~~~p~~~~~~~~t~~e~~~~~~G~~ 239 (252)
...-. ..+.....+.+....+|..
T Consensus 195 L~eSi-~~~p~~~~l~~~~~~~gf~ 218 (238)
T COG2226 195 LAESI-RRFPDQEELKQMIEKAGFE 218 (238)
T ss_pred HHHHH-HhCCCHHHHHHHHHhcCce
Confidence 11111 1123445667777788876
No 9
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.70 E-value=1.2e-16 Score=120.30 Aligned_cols=108 Identities=22% Similarity=0.374 Sum_probs=84.1
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...|||||||+|.++..+++.+|+.+++|||+|+.+++.|++++... ...+|+.++++|+ ...... ...+|.
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~~i~~~~~d~-~~~~~~--~~~~D~ 73 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEE-----GLSDRITFVQGDA-EFDPDF--LEPFDL 73 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHT-----TTTTTEEEEESCC-HGGTTT--SSCEEE
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhc-----CCCCCeEEEECcc-ccCccc--CCCCCE
Confidence 45899999999999999999889999999999999999999887443 3557999999998 222222 346999
Q ss_pred EEEeC-CCC-ccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 146 MFFLF-PDP-HFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 146 i~~~f-pdP-~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
|++.. ... +.. +. ....+++.+.+.|+|||++++.+
T Consensus 74 v~~~~~~~~~~~~--~~----~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 74 VICSGFTLHFLLP--LD----ERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EEECSGSGGGCCH--HH----HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEECCCccccccc--hh----HHHHHHHHHHHhcCCCcEEEEEE
Confidence 99876 222 111 00 12358999999999999999875
No 10
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.70 E-value=8.9e-17 Score=137.13 Aligned_cols=105 Identities=21% Similarity=0.362 Sum_probs=75.0
Q ss_pred CceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 66 KIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
...|||+|||+|.++..++++. |...++|+|+|+.|++.|++++... +..||.++++|+. .++ ++++++|
T Consensus 48 g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~------~~~~i~~v~~da~-~lp--~~d~sfD 118 (233)
T PF01209_consen 48 GDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKRE------GLQNIEFVQGDAE-DLP--FPDNSFD 118 (233)
T ss_dssp --EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHT------T--SEEEEE-BTT-B----S-TT-EE
T ss_pred CCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhh------CCCCeeEEEcCHH-Hhc--CCCCcee
Confidence 4599999999999999999984 6789999999999999999887653 5669999999997 476 7899999
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
.|.+.|--..... ....++++.|+|||||++.+..
T Consensus 119 ~v~~~fglrn~~d--------~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 119 AVTCSFGLRNFPD--------RERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp EEEEES-GGG-SS--------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEHHhhHHhhCC--------HHHHHHHHHHHcCCCeEEEEee
Confidence 9998663111100 1259999999999999988753
No 11
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.68 E-value=6.9e-16 Score=123.07 Aligned_cols=108 Identities=27% Similarity=0.470 Sum_probs=87.4
Q ss_pred CceEEEEcCcccHHHHHHH-HHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 66 KIQFADIGCGFGGLLISLS-TLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA-~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
...|||+|||+|.++..++ +.+|...++|+|+++.|++.|+.++... +.+|+.|+++|+.+ ++..+. +.+|
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~------~~~ni~~~~~d~~~-l~~~~~-~~~D 75 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKEL------GLDNIEFIQGDIED-LPQELE-EKFD 75 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHT------TSTTEEEEESBTTC-GCGCSS-TTEE
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccc------cccccceEEeehhc-cccccC-CCee
Confidence 5689999999999999999 5578899999999999999999877664 77899999999986 653333 7999
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV 189 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~ 189 (252)
.|+...+..+... ...+++.+.++|++||.+++....
T Consensus 76 ~I~~~~~l~~~~~--------~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 76 IIISNGVLHHFPD--------PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEEESTGGGTSH--------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEEEcCchhhccC--------HHHHHHHHHHHcCCCcEEEEEECC
Confidence 9998754433221 125899999999999999887655
No 12
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.65 E-value=2.1e-15 Score=134.19 Aligned_cols=151 Identities=16% Similarity=0.156 Sum_probs=103.8
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...|||||||+|.++..+|+. +..++|||+++++++.|+.+.... ....++.++++|+.+ ++ +.+++||.
T Consensus 132 g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~-----~~~~~i~~~~~dae~-l~--~~~~~FD~ 201 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMD-----PVTSTIEYLCTTAEK-LA--DEGRKFDA 201 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhc-----CcccceeEEecCHHH-hh--hccCCCCE
Confidence 458999999999999999875 679999999999999998764321 123589999999864 54 45679999
Q ss_pred EEEeC-----CCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcccccccccccCccc
Q 025492 146 MFFLF-----PDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVV 220 (252)
Q Consensus 146 i~~~f-----pdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 220 (252)
|++.. +||. .+++++.++|||||.+++.|.+.....+....+........++...+. .
T Consensus 202 Vi~~~vLeHv~d~~-------------~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~---~- 264 (322)
T PLN02396 202 VLSLEVIEHVANPA-------------EFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQ---W- 264 (322)
T ss_pred EEEhhHHHhcCCHH-------------HHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcC---c-
Confidence 98743 4432 699999999999999999998876544433332211111112211111 0
Q ss_pred cCCCCCCHHHHHHHHcCCCeEEE
Q 025492 221 KLLSSATEEGQKVARNGGQTFQA 243 (252)
Q Consensus 221 ~~~~~~t~~e~~~~~~G~~i~~~ 243 (252)
.......+..+...+.|.++..+
T Consensus 265 ~~f~tp~eL~~lL~~aGf~i~~~ 287 (322)
T PLN02396 265 SSFVTPEELSMILQRASVDVKEM 287 (322)
T ss_pred cCCCCHHHHHHHHHHcCCeEEEE
Confidence 11234567778888888876443
No 13
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.65 E-value=1.7e-15 Score=131.53 Aligned_cols=108 Identities=17% Similarity=0.256 Sum_probs=84.3
Q ss_pred CceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 66 KIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
...|||||||+|.++..+++.. |..+++|+|+|++|++.|+++.... .....+|+.++++|+. .++ ++++++|
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~---~~~~~~~i~~~~~d~~-~lp--~~~~sfD 147 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELK---AKSCYKNIEWIEGDAT-DLP--FDDCYFD 147 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhh---hhccCCCeEEEEcccc-cCC--CCCCCEe
Confidence 4589999999999999999884 5679999999999999998764321 1124568999999986 355 6788999
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
.|++++.-.+... ...+++++.++|||||.|++..
T Consensus 148 ~V~~~~~l~~~~d--------~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 148 AITMGYGLRNVVD--------RLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred EEEEecccccCCC--------HHHHHHHHHHHcCcCcEEEEEE
Confidence 9998664332211 1269999999999999998864
No 14
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.65 E-value=1.1e-15 Score=124.50 Aligned_cols=111 Identities=15% Similarity=0.265 Sum_probs=87.1
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...|||||||+|.+++.+|+..|...++++|+++.+++.|++++... +..++.++..|..+. ++++.+|.
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n------~~~~v~~~~~d~~~~----~~~~~fD~ 101 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERN------GLENVEVVQSDLFEA----LPDGKFDL 101 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHT------TCTTEEEEESSTTTT----CCTTCEEE
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc------Ccccccccccccccc----ccccceeE
Confidence 45899999999999999999999988999999999999999988764 666799999997542 44789999
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV 189 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~ 189 (252)
|++|.|--. .......+...+++...+.|+|||.+++....
T Consensus 102 Iv~NPP~~~---~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 102 IVSNPPFHA---GGDDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp EEE---SBT---TSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred EEEccchhc---ccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 999987211 11111223457999999999999999877654
No 15
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.65 E-value=6.2e-16 Score=112.29 Aligned_cols=95 Identities=22% Similarity=0.398 Sum_probs=74.3
Q ss_pred EEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEEEe
Q 025492 70 ADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMFFL 149 (252)
Q Consensus 70 LDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~~~ 149 (252)
||||||+|..+..+++. +..+++|+|+++++++.++++. ...++.++.+|+. .++ ++++++|.|+.+
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~---------~~~~~~~~~~d~~-~l~--~~~~sfD~v~~~ 67 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRL---------KNEGVSFRQGDAE-DLP--FPDNSFDVVFSN 67 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHT---------TTSTEEEEESBTT-SSS--S-TT-EEEEEEE
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcc---------cccCchheeehHH-hCc--cccccccccccc
Confidence 89999999999999999 8889999999999999887654 2345669999987 454 789999999987
Q ss_pred CCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025492 150 FPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT 185 (252)
Q Consensus 150 fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~ 185 (252)
..--|... ...+++++.|+|||||.++|
T Consensus 68 ~~~~~~~~--------~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 68 SVLHHLED--------PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHGGGSSH--------HHHHHHHHHHHEEEEEEEEE
T ss_pred cceeeccC--------HHHHHHHHHHHcCcCeEEeC
Confidence 64444311 23699999999999999986
No 16
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.63 E-value=6.8e-15 Score=112.36 Aligned_cols=103 Identities=17% Similarity=0.179 Sum_probs=83.9
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...|||||||+|.++..+++..|+..++|+|+++.+++.|++++... +..++.++.+|+...+. .....+|.
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~~~~~~~~~~--~~~~~~D~ 91 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRF------GVSNIVIVEGDAPEALE--DSLPEPDR 91 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHh------CCCceEEEeccccccCh--hhcCCCCE
Confidence 45899999999999999999998899999999999999998877654 56789999999764332 12358999
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
|++..+... ...+++.+.+.|+|||.|++..
T Consensus 92 v~~~~~~~~-----------~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 92 VFIGGSGGL-----------LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred EEECCcchh-----------HHHHHHHHHHHcCCCCEEEEEe
Confidence 998654322 1369999999999999999864
No 17
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.63 E-value=1.4e-14 Score=120.50 Aligned_cols=118 Identities=16% Similarity=0.190 Sum_probs=91.4
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
..+|||+|||+|.++..+|+..|+..++|+|+++.+++.|++++... +..|+.++.+|+.+.++. + ....|.
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~------~~~~v~~~~~d~~~~~~~-~-~~~~d~ 112 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRF------GVKNVEVIEGSAPECLAQ-L-APAPDR 112 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh------CCCCeEEEECchHHHHhh-C-CCCCCE
Confidence 45899999999999999998888899999999999999999888664 667899999998653432 2 123466
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcC
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENH 203 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~ 203 (252)
+++....++ ..+++.+.++|+|||.+++.+...+......+.+...
T Consensus 113 v~~~~~~~~------------~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~ 158 (196)
T PRK07402 113 VCIEGGRPI------------KEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQL 158 (196)
T ss_pred EEEECCcCH------------HHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhc
Confidence 766543332 3699999999999999999887665555555666543
No 18
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.63 E-value=7.5e-15 Score=121.24 Aligned_cols=116 Identities=16% Similarity=0.147 Sum_probs=92.0
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...|||||||+|..++.+|...|+..++|+|+++.|++.|++++... +++|+.++++|+.+ +. . .+++|.
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~------~l~~i~~~~~d~~~-~~--~-~~~fDl 115 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAEL------GLKNVTVVHGRAEE-FG--Q-EEKFDV 115 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHc------CCCCEEEEeccHhh-CC--C-CCCccE
Confidence 45899999999999999999999999999999999999999887664 67789999999874 43 2 678999
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP 204 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~ 204 (252)
|+++.-.++ ..+++.++++|+|||.+++.. ...+...+.+.....+
T Consensus 116 V~~~~~~~~------------~~~l~~~~~~LkpGG~lv~~~-~~~~~~~l~~~~~~~~ 161 (187)
T PRK00107 116 VTSRAVASL------------SDLVELCLPLLKPGGRFLALK-GRDPEEEIAELPKALG 161 (187)
T ss_pred EEEccccCH------------HHHHHHHHHhcCCCeEEEEEe-CCChHHHHHHHHHhcC
Confidence 998642111 369999999999999999875 3345554444444444
No 19
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.62 E-value=1.4e-15 Score=127.76 Aligned_cols=122 Identities=23% Similarity=0.346 Sum_probs=99.8
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...|||||||.|.++..||+. +.+|+|+|+++++|+.|+.+..+ .++ ++.+.+..+.+... ..++||.
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e------~gv-~i~y~~~~~edl~~---~~~~FDv 127 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALE------SGV-NIDYRQATVEDLAS---AGGQFDV 127 (243)
T ss_pred CCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhh------ccc-cccchhhhHHHHHh---cCCCccE
Confidence 458999999999999999999 58999999999999999876543 233 36677777765332 2379999
Q ss_pred EEE-----eCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCccccccc
Q 025492 146 MFF-----LFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKE 212 (252)
Q Consensus 146 i~~-----~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~~~~ 212 (252)
|.+ +.|||- .|++.+.+++||||.++++|.++....++...+.++..+..++..
T Consensus 128 V~cmEVlEHv~dp~-------------~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~g 186 (243)
T COG2227 128 VTCMEVLEHVPDPE-------------SFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKG 186 (243)
T ss_pred EEEhhHHHccCCHH-------------HHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCc
Confidence 986 578876 599999999999999999999999999999988877666666543
No 20
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.61 E-value=2.1e-14 Score=118.41 Aligned_cols=117 Identities=18% Similarity=0.184 Sum_probs=92.1
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...|||||||+|.+++.+++.+|+..++|+|+++.+++.|++++... ++.++.++.+|+... + ++++|.
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~------~~~~i~~~~~d~~~~----~-~~~~D~ 100 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRF------GCGNIDIIPGEAPIE----L-PGKADA 100 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh------CCCCeEEEecCchhh----c-CcCCCE
Confidence 45899999999999999999999899999999999999999887654 566899999987421 2 357999
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP 204 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~ 204 (252)
|++...... ...+++.+.+.|+|||.+++..-..+-...+.+.+.+.+
T Consensus 101 v~~~~~~~~-----------~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g 148 (187)
T PRK08287 101 IFIGGSGGN-----------LTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCG 148 (187)
T ss_pred EEECCCccC-----------HHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCC
Confidence 998653221 135899999999999999886544445566667777665
No 21
>PLN02244 tocopherol O-methyltransferase
Probab=99.61 E-value=7.1e-15 Score=132.26 Aligned_cols=104 Identities=23% Similarity=0.395 Sum_probs=84.4
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCccc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
...|||||||+|.++..+++.+ +..++|||+|+.+++.|++++... ++ +++.++.+|+.. ++ ++++++|
T Consensus 119 ~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~------g~~~~v~~~~~D~~~-~~--~~~~~FD 188 (340)
T PLN02244 119 PKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQ------GLSDKVSFQVADALN-QP--FEDGQFD 188 (340)
T ss_pred CCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhc------CCCCceEEEEcCccc-CC--CCCCCcc
Confidence 4589999999999999999987 679999999999999998776542 33 579999999863 43 6789999
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
.|+......+... ...+++++.++|||||.|++.+
T Consensus 189 ~V~s~~~~~h~~d--------~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 189 LVWSMESGEHMPD--------KRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred EEEECCchhccCC--------HHHHHHHHHHHcCCCcEEEEEE
Confidence 9998654333221 1269999999999999999976
No 22
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.60 E-value=1.2e-14 Score=123.53 Aligned_cols=106 Identities=20% Similarity=0.372 Sum_probs=85.9
Q ss_pred CceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 66 KIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
...|||||||+|.++..+++.. |...++|+|+++.+++.|++++... +.+++.++++|+.. ++ ++++++|
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~------~~~~v~~~~~d~~~-~~--~~~~~fD 116 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA------GLHNVELVHGNAME-LP--FDDNSFD 116 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc------CCCceEEEEechhc-CC--CCCCCcc
Confidence 4589999999999999999985 6779999999999999998876543 56789999999864 43 5678999
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD 188 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td 188 (252)
.|++.+.-.|... ...+++++.++|+|||.+++...
T Consensus 117 ~V~~~~~l~~~~~--------~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 117 YVTIGFGLRNVPD--------YMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred EEEEecccccCCC--------HHHHHHHHHHHcCcCeEEEEEEC
Confidence 9998765433221 12589999999999999988653
No 23
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=8.9e-14 Score=117.77 Aligned_cols=117 Identities=18% Similarity=0.299 Sum_probs=104.7
Q ss_pred CCceEEEEcCcccHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc-EEEEeCCcccccCccCCCCc
Q 025492 65 KKIQFADIGCGFGGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQN-ISVVRTNSMKYIPNYFEKGQ 142 (252)
Q Consensus 65 ~~~~vLDIGcG~G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~~~~da~~~l~~~~~~~s 142 (252)
+..+|||.|.|+|.++..||.. .|...++.+|+.++.++.|.+|+.+. ++.| +.+..+|+.+.. ....
T Consensus 94 pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~------~l~d~v~~~~~Dv~~~~----~~~~ 163 (256)
T COG2519 94 PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF------GLGDRVTLKLGDVREGI----DEED 163 (256)
T ss_pred CCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh------ccccceEEEeccccccc----cccc
Confidence 4679999999999999999975 77789999999999999999999876 6666 999999987533 2449
Q ss_pred ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025492 143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP 204 (252)
Q Consensus 143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~ 204 (252)
+|.|++..|+|| .+++.+..+|||||.+.+-+.+-+..+.+.+.+++.+
T Consensus 164 vDav~LDmp~PW-------------~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g 212 (256)
T COG2519 164 VDAVFLDLPDPW-------------NVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERG 212 (256)
T ss_pred cCEEEEcCCChH-------------HHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcC
Confidence 999999999999 6999999999999999999999999999999999884
No 24
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.59 E-value=7.4e-15 Score=111.52 Aligned_cols=115 Identities=17% Similarity=0.248 Sum_probs=87.0
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM 146 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i 146 (252)
.+|||+|||+|.+++.+++.. ..+++|+|+++.+++.|+.++... ....++.++++|+.+.. ..+.++.+|.|
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~-----~~~~~~~~~~~D~~~~~-~~~~~~~~D~I 74 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRN-----GLDDRVEVIVGDARDLP-EPLPDGKFDLI 74 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHC-----TTTTTEEEEESHHHHHH-HTCTTT-EEEE
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHc-----cCCceEEEEECchhhch-hhccCceeEEE
Confidence 479999999999999999997 789999999999999999887653 12357999999997543 34678999999
Q ss_pred EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025492 147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD 188 (252)
Q Consensus 147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td 188 (252)
+.|.|--.........+-....+++.+.++|+|||.+++.+.
T Consensus 75 v~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 75 VTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp EE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 999765422111111222456899999999999999999874
No 25
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.59 E-value=1.5e-14 Score=118.92 Aligned_cols=102 Identities=22% Similarity=0.216 Sum_probs=83.5
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...|||||||+|.+++.+|...|+..++|||+++.|++.+++++... +++|+.++++|+.+ + ...+++|.
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~------~~~~i~~i~~d~~~-~---~~~~~fD~ 112 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAEL------GLNNVEIVNGRAED-F---QHEEQFDV 112 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHh------CCCCeEEEecchhh-c---cccCCccE
Confidence 45899999999999999999988889999999999999998877554 67789999999874 3 23578999
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV 189 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~ 189 (252)
|+++. -.. .+.+++.+.++|+|||.+++....
T Consensus 113 I~s~~-~~~-----------~~~~~~~~~~~LkpgG~lvi~~~~ 144 (181)
T TIGR00138 113 ITSRA-LAS-----------LNVLLELTLNLLKVGGYFLAYKGK 144 (181)
T ss_pred EEehh-hhC-----------HHHHHHHHHHhcCCCCEEEEEcCC
Confidence 98764 111 135889999999999999987543
No 26
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.59 E-value=4.9e-14 Score=114.52 Aligned_cols=120 Identities=18% Similarity=0.158 Sum_probs=105.0
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
+.+++|||||+|..++.+|...|..++++||.++++++..++|++++ +.+|+.++.+||.+.|++ + .++|.
T Consensus 35 g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~f------g~~n~~vv~g~Ap~~L~~-~--~~~da 105 (187)
T COG2242 35 GDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARF------GVDNLEVVEGDAPEALPD-L--PSPDA 105 (187)
T ss_pred CCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHh------CCCcEEEEeccchHhhcC-C--CCCCE
Confidence 56999999999999999999899999999999999999999998876 799999999999877663 2 27999
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCc
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMF 206 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~ 206 (252)
||+.-.-.- +.+|+.+...|||||+++...-..+-...+++.++..+++
T Consensus 106 iFIGGg~~i------------~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ 154 (187)
T COG2242 106 IFIGGGGNI------------EEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGR 154 (187)
T ss_pred EEECCCCCH------------HHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCc
Confidence 999764222 3699999999999999999888888888888889888765
No 27
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.57 E-value=3e-14 Score=123.15 Aligned_cols=108 Identities=18% Similarity=0.190 Sum_probs=84.1
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCccc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
...|||||||+|.++..+|+. +..++|+|+|+.|++.|++++... ++ +|+.++++|+.+ +.. +.++++|
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~------g~~~~v~~~~~d~~~-l~~-~~~~~fD 114 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAK------GVSDNMQFIHCAAQD-IAQ-HLETPVD 114 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhc------CCccceEEEEcCHHH-Hhh-hcCCCCC
Confidence 358999999999999999998 578999999999999998877543 43 689999999874 432 3467899
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchH
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEE 191 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~ 191 (252)
.|+++..-.|.... ..+++++.++|||||.|.+...+.+
T Consensus 115 ~V~~~~vl~~~~~~--------~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 115 LILFHAVLEWVADP--------KSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred EEEehhHHHhhCCH--------HHHHHHHHHHcCCCeEEEEEEECcc
Confidence 99976543222111 2589999999999999998765543
No 28
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.57 E-value=8.6e-14 Score=115.93 Aligned_cols=121 Identities=17% Similarity=0.209 Sum_probs=95.5
Q ss_pred CceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCC-cccEEEEeCCcccccCccCCCCcc
Q 025492 66 KIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQ-YQNISVVRTNSMKYIPNYFEKGQL 143 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~-~~nv~~~~~da~~~l~~~~~~~s~ 143 (252)
...|||+|||+|.+++.+|... +..+++|+|+++.+++.|++++... + ..|+.++.+|+.+.++. ..+.+
T Consensus 41 ~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~------g~~~~v~~~~~d~~~~l~~--~~~~~ 112 (198)
T PRK00377 41 GDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF------GVLNNIVLIKGEAPEILFT--INEKF 112 (198)
T ss_pred cCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh------CCCCCeEEEEechhhhHhh--cCCCC
Confidence 5589999999999999999874 5678999999999999999887654 4 47899999998654432 13579
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCC
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPM 205 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~ 205 (252)
|.|+++...... ..+++.+.++|+|||.+++.+-..+....+.+.+...++
T Consensus 113 D~V~~~~~~~~~-----------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~ 163 (198)
T PRK00377 113 DRIFIGGGSEKL-----------KEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGF 163 (198)
T ss_pred CEEEECCCcccH-----------HHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCC
Confidence 999986533221 369999999999999999876666667777778876663
No 29
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.57 E-value=2.4e-14 Score=121.92 Aligned_cols=131 Identities=18% Similarity=0.239 Sum_probs=101.1
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...|||||||+|..++.+|++.+.+.++|||+.+.+++.|++++... ..-+++.+++.|+.+ +.......++|.
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln-----~l~~ri~v~~~Di~~-~~~~~~~~~fD~ 118 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALN-----PLEERIQVIEADIKE-FLKALVFASFDL 118 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhC-----cchhceeEehhhHHH-hhhcccccccCE
Confidence 45899999999999999999988899999999999999999988653 344689999999975 433455668999
Q ss_pred EEEeCC----------CCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcC
Q 025492 146 MFFLFP----------DPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENH 203 (252)
Q Consensus 146 i~~~fp----------dP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~ 203 (252)
|++|.| +|...-.|+.-.....++++...+.|||||.++++...+.+.+ +.+.+...
T Consensus 119 Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~e-i~~~l~~~ 185 (248)
T COG4123 119 IICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAE-IIELLKSY 185 (248)
T ss_pred EEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHH-HHHHHHhc
Confidence 999975 1221112233334557899999999999999999987666554 44455543
No 30
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.57 E-value=2.7e-14 Score=124.65 Aligned_cols=106 Identities=25% Similarity=0.462 Sum_probs=85.0
Q ss_pred CceEEEEcCcccHHHHHHHHHCCC---CeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPE---VLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQ 142 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~---~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s 142 (252)
...|||||||+|.++..+++..+. ..++|+|+|+.|++.|.++ .+|+.++.+|+. .++ +++++
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-----------~~~~~~~~~d~~-~lp--~~~~s 151 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-----------YPQVTFCVASSH-RLP--FADQS 151 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----------CCCCeEEEeecc-cCC--CcCCc
Confidence 457999999999999999998764 3789999999999887542 357899999986 354 67889
Q ss_pred ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHH
Q 025492 143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCL 200 (252)
Q Consensus 143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~ 200 (252)
+|.|+..+. | ..++++.++|||||.|++.+........+.+.+
T Consensus 152 fD~I~~~~~-~--------------~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~ 194 (272)
T PRK11088 152 LDAIIRIYA-P--------------CKAEELARVVKPGGIVITVTPGPRHLFELKGLI 194 (272)
T ss_pred eeEEEEecC-C--------------CCHHHHHhhccCCCEEEEEeCCCcchHHHHHHh
Confidence 999998763 2 256899999999999999988766555555444
No 31
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.57 E-value=2.4e-14 Score=123.80 Aligned_cols=100 Identities=16% Similarity=0.235 Sum_probs=83.5
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...|||||||+|.++..+++.+|+..++|||+|+.|++.|+++ .+++.++.+|+.. + .++.++|.
T Consensus 32 ~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~-----------~~~~~~~~~d~~~-~---~~~~~fD~ 96 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSR-----------LPDCQFVEADIAS-W---QPPQALDL 96 (258)
T ss_pred CCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHh-----------CCCCeEEECchhc-c---CCCCCccE
Confidence 4589999999999999999999999999999999999887653 3578899999863 2 34568999
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD 188 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td 188 (252)
|+.++.-.|.+. ...+++++.++|+|||.+++.++
T Consensus 97 v~~~~~l~~~~d--------~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 97 IFANASLQWLPD--------HLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred EEEccChhhCCC--------HHHHHHHHHHhcCCCcEEEEECC
Confidence 999887767542 23699999999999999999764
No 32
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.56 E-value=2.3e-14 Score=123.85 Aligned_cols=98 Identities=16% Similarity=0.200 Sum_probs=80.7
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...|||||||+|.++..+++..|+..++|+|+|+.|++.|++ .++.++++|+.. + .+++++|.
T Consensus 30 ~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-------------~~~~~~~~d~~~-~---~~~~~fD~ 92 (255)
T PRK14103 30 ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-------------RGVDARTGDVRD-W---KPKPDTDV 92 (255)
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-------------cCCcEEEcChhh-C---CCCCCceE
Confidence 458999999999999999999999999999999999987743 157899999863 3 24679999
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD 188 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td 188 (252)
|++++.-.|... ...+++++.++|||||.+++...
T Consensus 93 v~~~~~l~~~~d--------~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 93 VVSNAALQWVPE--------HADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred EEEehhhhhCCC--------HHHHHHHHHHhCCCCcEEEEEcC
Confidence 999876655432 13699999999999999999753
No 33
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.55 E-value=2.6e-14 Score=117.91 Aligned_cols=154 Identities=16% Similarity=0.220 Sum_probs=109.4
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM 146 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i 146 (252)
..|+|||||.|..+..|++++|+..++|||-|++|++.|+. .++|++|..+|+.. +-++...|.+
T Consensus 32 ~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~-----------rlp~~~f~~aDl~~----w~p~~~~dll 96 (257)
T COG4106 32 RRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQ-----------RLPDATFEEADLRT----WKPEQPTDLL 96 (257)
T ss_pred ceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHH-----------hCCCCceecccHhh----cCCCCccchh
Confidence 47999999999999999999999999999999999988754 47899999999863 4457788999
Q ss_pred EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc---hHHHHHHHHHHhcCCCcccccccccccCccccCC
Q 025492 147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV---EELGDWMRSCLENHPMFEALTKEELEADPVVKLL 223 (252)
Q Consensus 147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 223 (252)
+.|-.-.|-- .+..+|..+...|.|||.+.++..+ +.-..-|.+...+.|+=.........-.+ ..
T Consensus 97 faNAvlqWlp--------dH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~---v~ 165 (257)
T COG4106 97 FANAVLQWLP--------DHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAP---LP 165 (257)
T ss_pred hhhhhhhhcc--------ccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCC---CC
Confidence 9876555532 1346999999999999999998753 33455566666665542222221111111 12
Q ss_pred CCCCHHHHHHHHcC-CCeEEEEEE
Q 025492 224 SSATEEGQKVARNG-GQTFQAVFR 246 (252)
Q Consensus 224 ~~~t~~e~~~~~~G-~~i~~~~~~ 246 (252)
.+.++||...-..- -.||..+|-
T Consensus 166 s~a~Yy~lLa~~~~rvDiW~T~Y~ 189 (257)
T COG4106 166 SPAAYYELLAPLACRVDIWHTTYY 189 (257)
T ss_pred CHHHHHHHhCcccceeeeeeeecc
Confidence 45567775543322 256777764
No 34
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.55 E-value=8.6e-14 Score=126.16 Aligned_cols=124 Identities=11% Similarity=0.154 Sum_probs=92.6
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM 146 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i 146 (252)
..|||+|||+|.+++.+++++|...++|+|+|+.+++.|++++... ...+..++.++..|+... +++.++|.|
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n---~~~~~~~v~~~~~D~l~~----~~~~~fDlI 302 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETN---MPEALDRCEFMINNALSG----VEPFRFNAV 302 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc---CcccCceEEEEEcccccc----CCCCCEEEE
Confidence 4899999999999999999999999999999999999999887653 111235789999887432 345689999
Q ss_pred EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc-hHHHHHHHHHH
Q 025492 147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV-EELGDWMRSCL 200 (252)
Q Consensus 147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~-~~~~~~~~~~~ 200 (252)
++|.|-.+-..- ..-+...+++.+.++|+|||.|+++.+. .+|...+.+.+
T Consensus 303 lsNPPfh~~~~~---~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~f 354 (378)
T PRK15001 303 LCNPPFHQQHAL---TDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIF 354 (378)
T ss_pred EECcCcccCccC---CHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHc
Confidence 998765332110 0012246899999999999999999743 45655555544
No 35
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.54 E-value=8.7e-14 Score=119.11 Aligned_cols=106 Identities=16% Similarity=0.250 Sum_probs=82.1
Q ss_pred CceEEEEcCcccHHHHHHHHH--CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025492 66 KIQFADIGCGFGGLLISLSTL--FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL 143 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~--~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~ 143 (252)
...|||||||+|.++..+++. +|+++++|+|+|+.|++.|++++... ....++.++++|+.. ++ + ..+
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~-----~~~~~v~~~~~d~~~-~~--~--~~~ 123 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY-----HSEIPVEILCNDIRH-VE--I--KNA 123 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc-----CCCCCeEEEECChhh-CC--C--CCC
Confidence 458999999999999999997 47899999999999999998877542 223579999999863 33 2 347
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
|.|++++.-.|..... ...+++++.++|+|||.|++..
T Consensus 124 d~v~~~~~l~~~~~~~------~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 124 SMVILNFTLQFLPPED------RIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred CEEeeecchhhCCHHH------HHHHHHHHHHhcCCCeEEEEee
Confidence 8888877655532110 1269999999999999999863
No 36
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.54 E-value=2e-13 Score=115.26 Aligned_cols=153 Identities=14% Similarity=0.191 Sum_probs=104.6
Q ss_pred CceEEEEcCcccHHHHHHHHHCCC------CeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCC
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPE------VLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFE 139 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~------~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~ 139 (252)
...+||++||+|.++..+.+.-+. .+|+++||++.|+..+.++..+. .. ...+.+.++.+||+ .|+ |+
T Consensus 101 ~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~-~l--~~~~~~~w~~~dAE-~Lp--Fd 174 (296)
T KOG1540|consen 101 GMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKR-PL--KASSRVEWVEGDAE-DLP--FD 174 (296)
T ss_pred CCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhc-CC--CcCCceEEEeCCcc-cCC--CC
Confidence 468999999999999999998665 79999999999999888765431 11 12235999999997 587 99
Q ss_pred CCcccEEEEeC-----CCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchH---HHHHHHHHHhcCCCcccccc
Q 025492 140 KGQLTKMFFLF-----PDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEE---LGDWMRSCLENHPMFEALTK 211 (252)
Q Consensus 140 ~~s~d~i~~~f-----pdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~---~~~~~~~~~~~~~~~~~~~~ 211 (252)
++++|...+-| ++|. ..|++++|+|||||+|.+.--+.. +..|+..+ ..|..++.
T Consensus 175 d~s~D~yTiafGIRN~th~~-------------k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~----ysf~Vlpv 237 (296)
T KOG1540|consen 175 DDSFDAYTIAFGIRNVTHIQ-------------KALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQ----YSFDVLPV 237 (296)
T ss_pred CCcceeEEEecceecCCCHH-------------HHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHh----hhhhhhch
Confidence 99999998754 4443 599999999999999987543322 22322222 12222221
Q ss_pred --cccccCc--------cccCCCCCCHHHHHHHHcCCCeE
Q 025492 212 --EELEADP--------VVKLLSSATEEGQKVARNGGQTF 241 (252)
Q Consensus 212 --~~~~~~p--------~~~~~~~~t~~e~~~~~~G~~i~ 241 (252)
+.++.+- .-+...+..+|+.+...+|+..-
T Consensus 238 lG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~ 277 (296)
T KOG1540|consen 238 LGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSV 277 (296)
T ss_pred hhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCccc
Confidence 1111110 01112345589999999998754
No 37
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.53 E-value=2.3e-13 Score=116.72 Aligned_cols=131 Identities=14% Similarity=0.260 Sum_probs=96.0
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM 146 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i 146 (252)
..|||+|||+|.++..++...|...++|+|+++.+++.|+.++... +++|+.++++|+.. .++++++|.|
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~------~~~~~~~~~~d~~~----~~~~~~fD~V 158 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARL------GLDNVTFLQSDWFE----PLPGGKFDLI 158 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc------CCCeEEEEECchhc----cCcCCceeEE
Confidence 4899999999999999999999999999999999999998887553 66789999999864 2456789999
Q ss_pred EEeCCCCcccccc---------cccc---------ccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCccc
Q 025492 147 FFLFPDPHFKEKN---------HRRR---------VISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEA 208 (252)
Q Consensus 147 ~~~fpdP~~k~~h---------~krr---------~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~ 208 (252)
+.|.|--.....+ .... .....+++.+.++|+|||.+++..... ....+.+.+...+ |..
T Consensus 159 i~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~-~~~~~~~~l~~~g-f~~ 236 (251)
T TIGR03534 159 VSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYD-QGEAVRALFEAAG-FAD 236 (251)
T ss_pred EECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECcc-HHHHHHHHHHhCC-CCc
Confidence 9987622111000 0000 011368899999999999999987543 3445566666554 543
Q ss_pred c
Q 025492 209 L 209 (252)
Q Consensus 209 ~ 209 (252)
+
T Consensus 237 v 237 (251)
T TIGR03534 237 V 237 (251)
T ss_pred e
Confidence 3
No 38
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.53 E-value=6.8e-14 Score=120.49 Aligned_cols=106 Identities=18% Similarity=0.240 Sum_probs=80.4
Q ss_pred CceEEEEcCcccHHHHHHHHH--CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025492 66 KIQFADIGCGFGGLLISLSTL--FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL 143 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~--~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~ 143 (252)
...|||||||+|..+..+++. .|+..++|+|+|+.|++.|++++... ....++.++++|+.+ ++ ...+
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~-----~~~~~v~~~~~d~~~-~~----~~~~ 126 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY-----KAPTPVDVIEGDIRD-IA----IENA 126 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc-----CCCCCeEEEeCChhh-CC----CCCC
Confidence 458999999999999999984 68899999999999999999887543 123479999999864 32 2347
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
|.|++++.-.+.... -...+++++.++|||||.|++..
T Consensus 127 D~vv~~~~l~~l~~~------~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 127 SMVVLNFTLQFLEPS------ERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred CEEehhhHHHhCCHH------HHHHHHHHHHHhcCCCCEEEEEE
Confidence 888876543221100 01359999999999999999864
No 39
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.53 E-value=4e-14 Score=113.82 Aligned_cols=154 Identities=22% Similarity=0.250 Sum_probs=104.9
Q ss_pred CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc-EEEEeCCcccc------cCcc
Q 025492 65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQN-ISVVRTNSMKY------IPNY 137 (252)
Q Consensus 65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~~~~da~~~------l~~~ 137 (252)
..+.|||+|||+|.++..||+..=...++|+|.|+++++.|+..... .+.+| |+|.+.|+... ++-.
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~------~~~~n~I~f~q~DI~~~~~~~~qfdlv 140 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAER------DGFSNEIRFQQLDITDPDFLSGQFDLV 140 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHh------cCCCcceeEEEeeccCCcccccceeEE
Confidence 35699999999999999999984223489999999999998865433 47777 99999998641 1122
Q ss_pred CCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcccccccccccC
Q 025492 138 FEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEAD 217 (252)
Q Consensus 138 ~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (252)
++.+++|.|.+.. |-.-. |+ ..++..+.+.|+|||.|+|.+=| .-.+++.+.+.... |+... .-
T Consensus 141 lDKGT~DAisLs~-d~~~~------r~--~~Y~d~v~~ll~~~gifvItSCN-~T~dELv~~f~~~~-f~~~~-----tv 204 (227)
T KOG1271|consen 141 LDKGTLDAISLSP-DGPVG------RL--VVYLDSVEKLLSPGGIFVITSCN-FTKDELVEEFENFN-FEYLS-----TV 204 (227)
T ss_pred eecCceeeeecCC-CCccc------ce--eeehhhHhhccCCCcEEEEEecC-ccHHHHHHHHhcCC-eEEEE-----ee
Confidence 4467777777653 32211 11 24788899999999999997632 23455666665543 33321 11
Q ss_pred ccccCCCCCCHHHHHHHHcCCCeEEEEEEec
Q 025492 218 PVVKLLSSATEEGQKVARNGGQTFQAVFRRI 248 (252)
Q Consensus 218 p~~~~~~~~t~~e~~~~~~G~~i~~~~~~k~ 248 (252)
| .+...|+ ...|..+..++|+++
T Consensus 205 p-----~ptF~Fg---G~~G~tvt~vaF~~k 227 (227)
T KOG1271|consen 205 P-----TPTFMFG---GSVGSTVTSVAFLRK 227 (227)
T ss_pred c-----cceEEec---cccccEEEEEEEecC
Confidence 1 1223566 678999999999764
No 40
>PRK04266 fibrillarin; Provisional
Probab=99.52 E-value=2.1e-13 Score=115.86 Aligned_cols=102 Identities=14% Similarity=0.160 Sum_probs=80.8
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccC-ccCCCCccc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIP-NYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~-~~~~~~s~d 144 (252)
...|||+|||+|.++..+|+..+...++|+|+++.|++.+.+++. ..+|+.++.+|+..... ..+ ..++|
T Consensus 73 g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~--------~~~nv~~i~~D~~~~~~~~~l-~~~~D 143 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAE--------ERKNIIPILADARKPERYAHV-VEKVD 143 (226)
T ss_pred CCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhh--------hcCCcEEEECCCCCcchhhhc-cccCC
Confidence 568999999999999999999876689999999999987765542 23689999999863110 112 35699
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
.|+...++||.. ..+++++.++|||||.|++.
T Consensus 144 ~i~~d~~~p~~~----------~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 144 VIYQDVAQPNQA----------EIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred EEEECCCChhHH----------HHHHHHHHHhcCCCcEEEEE
Confidence 999988888731 23689999999999999995
No 41
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.52 E-value=1.7e-13 Score=115.63 Aligned_cols=99 Identities=17% Similarity=0.275 Sum_probs=81.2
Q ss_pred CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
...|||||||+|.++..+|+..+ +..++|+|+++.+++.|++++... +++|+.++.+|+.+.+. ....+|
T Consensus 78 ~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~------g~~~v~~~~~d~~~~~~---~~~~fD 148 (215)
T TIGR00080 78 GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKL------GLDNVIVIVGDGTQGWE---PLAPYD 148 (215)
T ss_pred cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHC------CCCCeEEEECCcccCCc---ccCCCC
Confidence 56899999999999999999854 567999999999999999888664 67899999999864322 246899
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
.|++..+.+. +...+.+.|+|||++++..
T Consensus 149 ~Ii~~~~~~~--------------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 149 RIYVTAAGPK--------------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred EEEEcCCccc--------------ccHHHHHhcCcCcEEEEEE
Confidence 9998765432 5567889999999999865
No 42
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.52 E-value=4e-13 Score=118.01 Aligned_cols=126 Identities=12% Similarity=0.143 Sum_probs=93.9
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCcccE
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
..|||+|||+|.+++.+|...|+..++|+|+|+.+++.|++++... ++ .++.++++|+.+. ++++++|.
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~------~~~~~i~~~~~D~~~~----~~~~~fD~ 192 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERH------GLEDRVTLIQSDLFAA----LPGRKYDL 192 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCcEEEEECchhhc----cCCCCccE
Confidence 4899999999999999999999999999999999999999987653 44 4799999997532 34568999
Q ss_pred EEEeCCCCc-------cc-ccccccc---------ccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025492 146 MFFLFPDPH-------FK-EKNHRRR---------VISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP 204 (252)
Q Consensus 146 i~~~fpdP~-------~k-~~h~krr---------~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~ 204 (252)
|++|.|--- .. .+|..+. -....+++.+.+.|+|||.+++.+.... +.+.+.+...+
T Consensus 193 Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~--~~v~~~~~~~~ 266 (284)
T TIGR03533 193 IVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM--EALEEAYPDVP 266 (284)
T ss_pred EEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH--HHHHHHHHhCC
Confidence 999865110 00 0011110 1225689999999999999999887532 46666666654
No 43
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.52 E-value=2.6e-13 Score=111.17 Aligned_cols=125 Identities=18% Similarity=0.211 Sum_probs=91.4
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM 146 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i 146 (252)
..|||+|||+|.++..++...+ .++|+|+++.+++.+++++... +. ++.++.+|+.+. + .+++|.|
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~------~~-~~~~~~~d~~~~----~-~~~fD~V 86 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLN------NV-GLDVVMTDLFKG----V-RGKFDVI 86 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc------CC-ceEEEEcccccc----c-CCcccEE
Confidence 4799999999999999999865 8999999999999999887543 33 689999997532 2 4589999
Q ss_pred EEeCCCCccc---cccc----------cccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCC
Q 025492 147 FFLFPDPHFK---EKNH----------RRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPM 205 (252)
Q Consensus 147 ~~~fpdP~~k---~~h~----------krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~ 205 (252)
+.+.|-.... ..+. ..+.+...+++++.++|+|||.+++.+....-...+.+.+...++
T Consensus 87 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf 158 (179)
T TIGR00537 87 LFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGF 158 (179)
T ss_pred EECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCC
Confidence 9886521110 0000 001124578999999999999999987655435566777766653
No 44
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.51 E-value=1.8e-13 Score=113.94 Aligned_cols=104 Identities=13% Similarity=0.151 Sum_probs=79.7
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...|||+|||+|.++..||++ +.+++|+|+|+.|++.|++++... ++.|+.++..|+.. ++ + ++++|.
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~------~~~~v~~~~~d~~~-~~--~-~~~fD~ 98 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAE------NLDNLHTAVVDLNN-LT--F-DGEYDF 98 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHc------CCCcceEEecChhh-CC--c-CCCcCE
Confidence 347999999999999999987 568999999999999998876543 66789999999753 32 3 467999
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
|+.++.-.+... -....+++.+.++|+|||.+++.+
T Consensus 99 I~~~~~~~~~~~------~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 99 ILSTVVLMFLEA------KTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred EEEecchhhCCH------HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 998764322110 012369999999999999966543
No 45
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.51 E-value=4e-15 Score=109.96 Aligned_cols=99 Identities=24% Similarity=0.389 Sum_probs=62.6
Q ss_pred EEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEEEe
Q 025492 70 ADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMFFL 149 (252)
Q Consensus 70 LDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~~~ 149 (252)
||||||+|.++..++..+|...++|+|+|+.|++.|++++... ...+...+..+..+... ....+++|.|+..
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~~fD~V~~~ 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAEL------GNDNFERLRFDVLDLFD-YDPPESFDLVVAS 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHC------T---EEEEE--SSS----CCC----SEEEEE
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc------CCcceeEEEeecCChhh-cccccccceehhh
Confidence 7999999999999999999999999999999998887777653 33444455544432221 2223699999988
Q ss_pred CCCCccccccccccccCHHHHHHHHHhhcCCcEE
Q 025492 150 FPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGII 183 (252)
Q Consensus 150 fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l 183 (252)
..-.|... ...+++.+.++|+|||.|
T Consensus 74 ~vl~~l~~--------~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 74 NVLHHLED--------IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -TTS--S---------HHHHHHHHTTT-TSS-EE
T ss_pred hhHhhhhh--------HHHHHHHHHHHcCCCCCC
Confidence 76666521 126999999999999986
No 46
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.50 E-value=1.5e-13 Score=118.36 Aligned_cols=100 Identities=14% Similarity=0.149 Sum_probs=79.9
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...|||||||+|.++..++.. +..++|+|+|+.|++.|+++. ..+.++.+|+.. ++ ++++++|.
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~-----------~~~~~~~~d~~~-~~--~~~~~fD~ 106 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKD-----------AADHYLAGDIES-LP--LATATFDL 106 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhC-----------CCCCEEEcCccc-Cc--CCCCcEEE
Confidence 357999999999999999875 578999999999998876532 234678899863 54 66789999
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV 189 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~ 189 (252)
|+.+++-.|.... ..++.++.++|+|||.+++.+..
T Consensus 107 V~s~~~l~~~~d~--------~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 107 AWSNLAVQWCGNL--------STALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred EEECchhhhcCCH--------HHHHHHHHHHcCCCeEEEEEeCC
Confidence 9998776664321 36999999999999999998744
No 47
>PRK06922 hypothetical protein; Provisional
Probab=99.49 E-value=1.9e-13 Score=129.88 Aligned_cols=114 Identities=17% Similarity=0.238 Sum_probs=86.5
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...|||||||+|.++..+|+.+|+..++|+|+|+.|++.|+++... ...++.++++|+.. ++..++++++|.
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~-------~g~~ie~I~gDa~d-Lp~~fedeSFDv 490 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQN-------EGRSWNVIKGDAIN-LSSSFEKESVDT 490 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh-------cCCCeEEEEcchHh-CccccCCCCEEE
Confidence 4589999999999999999999999999999999999998876532 12478899999874 666678899999
Q ss_pred EEEeCCCCcc-c----cccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 146 MFFLFPDPHF-K----EKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 146 i~~~fpdP~~-k----~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
|+.+++-.|. . ....-..-....+++++.++|||||.+++..
T Consensus 491 VVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 491 IVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred EEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 9877543221 0 0000000122469999999999999999963
No 48
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.49 E-value=4.5e-13 Score=112.26 Aligned_cols=99 Identities=12% Similarity=0.194 Sum_probs=79.9
Q ss_pred CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccCCCCcc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYFEKGQL 143 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~~~~s~ 143 (252)
...|||||||+|..+..+|+..+ ...++|+|+++++++.|++++... +.. ++.++.+|+.+.++ ..+.+
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~------~~~~~v~~~~~d~~~~~~---~~~~f 143 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERL------GYWGVVEVYHGDGKRGLE---KHAPF 143 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCCcEEEEECCcccCCc---cCCCc
Confidence 45899999999999999999854 568999999999999998887653 443 69999999864332 35689
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
|.|++...-++ +.+++.++|+|||++++..
T Consensus 144 D~Ii~~~~~~~--------------~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 144 DAIIVTAAAST--------------IPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred cEEEEccCcch--------------hhHHHHHhcCcCcEEEEEE
Confidence 99999876443 5567889999999998854
No 49
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.49 E-value=4.4e-13 Score=116.86 Aligned_cols=105 Identities=14% Similarity=0.104 Sum_probs=82.7
Q ss_pred CCceEEEEcCcccHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025492 65 KKIQFADIGCGFGGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL 143 (252)
Q Consensus 65 ~~~~vLDIGcG~G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~ 143 (252)
....|||||||+|..++.+++. .+...++|+|+++.+++.|+++.... +.+|+.++.+|+. .++ ++++++
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~------g~~~v~~~~~d~~-~l~--~~~~~f 147 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA------GYTNVEFRLGEIE-ALP--VADNSV 147 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHc------CCCCEEEEEcchh-hCC--CCCCce
Confidence 3569999999999988887776 45668999999999999999876553 6679999999986 354 567899
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
|.|+.+..-.+... ...+++++.++|||||+|++.
T Consensus 148 D~Vi~~~v~~~~~d--------~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 148 DVIISNCVINLSPD--------KERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred eEEEEcCcccCCCC--------HHHHHHHHHHHcCCCcEEEEE
Confidence 99987653222111 125999999999999999985
No 50
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.49 E-value=5e-14 Score=104.62 Aligned_cols=97 Identities=25% Similarity=0.412 Sum_probs=71.5
Q ss_pred EEEEcCcccHHHHHHHHHC---CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 69 FADIGCGFGGLLISLSTLF---PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 69 vLDIGcG~G~~~~~lA~~~---p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
|||+|||+|..+..++..+ |...++|+|+|+.|++.++++.... +. +++++++|+.+ ++ +..+++|.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~------~~-~~~~~~~D~~~-l~--~~~~~~D~ 70 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED------GP-KVRFVQADARD-LP--FSDGKFDL 70 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT------TT-TSEEEESCTTC-HH--HHSSSEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc------CC-ceEEEECCHhH-Cc--ccCCCeeE
Confidence 7999999999999999986 5589999999999999998876542 33 89999999974 54 45679999
Q ss_pred EEEeCC-CCccccccccccccCHHHHHHHHHhhcCCc
Q 025492 146 MFFLFP-DPHFKEKNHRRRVISPHLLDEYAYVLGVGG 181 (252)
Q Consensus 146 i~~~fp-dP~~k~~h~krr~~~~~~l~~~~~~LkpgG 181 (252)
|+.... -.+.. .-....+++++.++|+|||
T Consensus 71 v~~~~~~~~~~~------~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 71 VVCSGLSLHHLS------PEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EEE-TTGGGGSS------HHHHHHHHHHHHHTEEEEE
T ss_pred EEEcCCccCCCC------HHHHHHHHHHHHHHhCCCC
Confidence 998543 11111 1112469999999999998
No 51
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.48 E-value=6.5e-13 Score=111.90 Aligned_cols=99 Identities=18% Similarity=0.281 Sum_probs=80.2
Q ss_pred CceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 66 KIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
...|||||||+|.++..+|+.. ++..++|+|+++.+++.|++++... +..|+.++.+|+... +.+.+.+|
T Consensus 77 g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~------g~~~v~~~~gd~~~~---~~~~~~fD 147 (212)
T PRK13942 77 GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKL------GYDNVEVIVGDGTLG---YEENAPYD 147 (212)
T ss_pred cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCCeEEEECCcccC---CCcCCCcC
Confidence 4589999999999999999885 4578999999999999999887654 678999999998632 23457899
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
.|++...-+ .+...+.+.|||||++++..
T Consensus 148 ~I~~~~~~~--------------~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 148 RIYVTAAGP--------------DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred EEEECCCcc--------------cchHHHHHhhCCCcEEEEEE
Confidence 999865422 24457788999999998864
No 52
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.47 E-value=6.5e-13 Score=112.59 Aligned_cols=103 Identities=23% Similarity=0.358 Sum_probs=83.8
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM 146 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i 146 (252)
..|||||||+|.++..+++..|...++|+|+++.+++.++.+. .+|+.++.+|+.. ++ ++++++|.|
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~----------~~~~~~~~~d~~~-~~--~~~~~fD~v 102 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKL----------SENVQFICGDAEK-LP--LEDSSFDLI 102 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhc----------CCCCeEEecchhh-CC--CCCCceeEE
Confidence 4799999999999999999999889999999999988776532 1478999999863 33 567899999
Q ss_pred EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCch
Q 025492 147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE 190 (252)
Q Consensus 147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~ 190 (252)
+.++.-.|.... ..++.++.++|+|||.+++.+...
T Consensus 103 i~~~~l~~~~~~--------~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 103 VSNLALQWCDDL--------SQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred EEhhhhhhccCH--------HHHHHHHHHHcCCCcEEEEEeCCc
Confidence 988766554321 259999999999999999976433
No 53
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.46 E-value=1.3e-12 Score=112.81 Aligned_cols=128 Identities=12% Similarity=0.179 Sum_probs=93.8
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM 146 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i 146 (252)
..|||+|||+|.+++.++...|...++|+|+|+.+++.|++++... + ++++++|+.+.++..+ .+.+|.|
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~------~---~~~~~~D~~~~l~~~~-~~~fDlV 157 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA------G---GTVHEGDLYDALPTAL-RGRVDIL 157 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------C---CEEEEeechhhcchhc-CCCEeEE
Confidence 4799999999999999999998889999999999999999887542 2 4788999764443222 3579999
Q ss_pred EEeCCC-Cccc--------ccccccc---------ccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCC
Q 025492 147 FFLFPD-PHFK--------EKNHRRR---------VISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPM 205 (252)
Q Consensus 147 ~~~fpd-P~~k--------~~h~krr---------~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~ 205 (252)
++|.|- |... ..|..+. -+...+++.+.++|+|||.+++.+.... ...+.+.+..+++
T Consensus 158 v~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~-~~~v~~~l~~~g~ 233 (251)
T TIGR03704 158 AANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQ-APLAVEAFARAGL 233 (251)
T ss_pred EECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcch-HHHHHHHHHHCCC
Confidence 998762 1100 0111111 1234788888999999999999987654 5667777877654
No 54
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.46 E-value=5.7e-13 Score=115.48 Aligned_cols=107 Identities=21% Similarity=0.354 Sum_probs=83.9
Q ss_pred CCCCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccCCCC
Q 025492 63 CSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYFEKG 141 (252)
Q Consensus 63 ~~~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~~~~ 141 (252)
.+++..|||||||.|.+++.+|+.+ +++|+|+++|+++.+.+++++.+. ++. |+.++-.|..+ +. +
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~------gl~~~v~v~l~d~rd-~~-----e 136 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAAR------GLEDNVEVRLQDYRD-FE-----E 136 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHc------CCCcccEEEeccccc-cc-----c
Confidence 4457799999999999999999999 899999999999999999988765 666 89999999763 33 2
Q ss_pred cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025492 142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD 188 (252)
Q Consensus 142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td 188 (252)
.||.|+..----+....+ .+.|++.+.++|+|||.+.+.+.
T Consensus 137 ~fDrIvSvgmfEhvg~~~------~~~ff~~~~~~L~~~G~~llh~I 177 (283)
T COG2230 137 PFDRIVSVGMFEHVGKEN------YDDFFKKVYALLKPGGRMLLHSI 177 (283)
T ss_pred ccceeeehhhHHHhCccc------HHHHHHHHHhhcCCCceEEEEEe
Confidence 388887532111111111 24799999999999999988764
No 55
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.46 E-value=1.7e-12 Score=115.22 Aligned_cols=126 Identities=10% Similarity=0.143 Sum_probs=92.7
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCcccE
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
..|||+|||+|.+++.+|...|+..++|+|+|+.+++.|++++... ++ .++.++++|+.+. ++++++|.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~------~l~~~i~~~~~D~~~~----l~~~~fDl 204 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERH------GLEDRVTLIESDLFAA----LPGRRYDL 204 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh------CCCCcEEEEECchhhh----CCCCCccE
Confidence 4799999999999999999999999999999999999999988654 44 4699999997543 33568999
Q ss_pred EEEeCCCCccc--------ccccccc---------ccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025492 146 MFFLFPDPHFK--------EKNHRRR---------VISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP 204 (252)
Q Consensus 146 i~~~fpdP~~k--------~~h~krr---------~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~ 204 (252)
|++|.|---.. .+|.... -....+++.+.+.|+|||.+++.+... ...+.+.+...+
T Consensus 205 IvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~--~~~~~~~~~~~~ 278 (307)
T PRK11805 205 IVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS--RVHLEEAYPDVP 278 (307)
T ss_pred EEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC--HHHHHHHHhhCC
Confidence 99985410000 0111110 123468999999999999999988754 234555565543
No 56
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.46 E-value=1.5e-12 Score=111.55 Aligned_cols=117 Identities=20% Similarity=0.279 Sum_probs=99.6
Q ss_pred CceEEEEcCcccHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCC---C
Q 025492 66 KIQFADIGCGFGGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFE---K 140 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~---~ 140 (252)
+.+|||.|.|+|.++..||+. .|...++..|++++.++.|++++... ++ .||.+.+.|+.. ..|. +
T Consensus 41 G~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~------gl~~~v~~~~~Dv~~---~g~~~~~~ 111 (247)
T PF08704_consen 41 GSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH------GLDDNVTVHHRDVCE---EGFDEELE 111 (247)
T ss_dssp T-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT------TCCTTEEEEES-GGC---G--STT-T
T ss_pred CCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc------CCCCCceeEecceec---cccccccc
Confidence 569999999999999999986 78889999999999999999998775 55 589999999852 2232 3
Q ss_pred CcccEEEEeCCCCccccccccccccCHHHHHHHHHhh-cCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025492 141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVL-GVGGIIYTITDVEELGDWMRSCLENHP 204 (252)
Q Consensus 141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~L-kpgG~l~~~td~~~~~~~~~~~~~~~~ 204 (252)
..+|.|++..|+|| ..+..+.++| ++||.|.+-+.+-+....+.+.+.+++
T Consensus 112 ~~~DavfLDlp~Pw-------------~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~g 163 (247)
T PF08704_consen 112 SDFDAVFLDLPDPW-------------EAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHG 163 (247)
T ss_dssp TSEEEEEEESSSGG-------------GGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTT
T ss_pred CcccEEEEeCCCHH-------------HHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCC
Confidence 67999999999999 4899999999 999999999999999999999999886
No 57
>PRK14968 putative methyltransferase; Provisional
Probab=99.45 E-value=1.6e-12 Score=106.48 Aligned_cols=127 Identities=19% Similarity=0.215 Sum_probs=89.7
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc--EEEEeCCcccccCccCCCCcc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQN--ISVVRTNSMKYIPNYFEKGQL 143 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n--v~~~~~da~~~l~~~~~~~s~ 143 (252)
...|||+|||+|.++..++.. +.+++|+|+++.+++.+++++... +..+ +.++.+|+.+. +.+..+
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~------~~~~~~~~~~~~d~~~~----~~~~~~ 91 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLN------NIRNNGVEVIRSDLFEP----FRGDKF 91 (188)
T ss_pred CCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHc------CCCCcceEEEecccccc----ccccCc
Confidence 458999999999999999998 679999999999999998877543 4444 88999997532 345589
Q ss_pred cEEEEeCCCCc----------ccccc---ccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025492 144 TKMFFLFPDPH----------FKEKN---HRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP 204 (252)
Q Consensus 144 d~i~~~fpdP~----------~k~~h---~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~ 204 (252)
|.|+.+.|--. ..... ...+.....+++++.++|+|||.+++......-.+.+.+.+.+.+
T Consensus 92 d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g 165 (188)
T PRK14968 92 DVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLG 165 (188)
T ss_pred eEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCC
Confidence 99998765211 00000 000112346899999999999999887654333445566666554
No 58
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.45 E-value=5.7e-13 Score=115.82 Aligned_cols=104 Identities=17% Similarity=0.237 Sum_probs=79.2
Q ss_pred CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
+...|||||||+|..+..+|..+ ++.++|+|+++.+++.|++++. ...++.++.+|+.. . .++++++|
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~--------~~~~i~~~~~D~~~-~--~~~~~~FD 119 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNS--------DKNKIEFEANDILK-K--DFPENTFD 119 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcC--------cCCceEEEECCccc-C--CCCCCCeE
Confidence 35689999999999999998875 6789999999999998876542 23579999999752 3 36778999
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
.|+....-.+.... -...++++++++|||||.|++.
T Consensus 120 ~V~s~~~l~h~~~~------d~~~~l~~i~r~LkPGG~lvi~ 155 (263)
T PTZ00098 120 MIYSRDAILHLSYA------DKKKLFEKCYKWLKPNGILLIT 155 (263)
T ss_pred EEEEhhhHHhCCHH------HHHHHHHHHHHHcCCCcEEEEE
Confidence 99974321111000 0136999999999999999985
No 59
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.45 E-value=5.8e-13 Score=112.62 Aligned_cols=103 Identities=28% Similarity=0.418 Sum_probs=79.8
Q ss_pred eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEE
Q 025492 68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMF 147 (252)
Q Consensus 68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~ 147 (252)
.|||||||+|.++..+++.+|+..++|+|+|+.+++.|++++... .-..++.++.+|+.. .+ + ++++|.|+
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~-----gl~~~i~~~~~d~~~-~~--~-~~~fD~I~ 72 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRAL-----GLQGRIRIFYRDSAK-DP--F-PDTYDLVF 72 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc-----CCCcceEEEeccccc-CC--C-CCCCCEee
Confidence 599999999999999999998899999999999999998877543 123478999999753 22 2 45899998
Q ss_pred EeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 148 FLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 148 ~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
....-.+... ...+++.+.++|+|||.+++..
T Consensus 73 ~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 73 GFEVIHHIKD--------KMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred hHHHHHhCCC--------HHHHHHHHHHHcCCCCEEEEEE
Confidence 6432111110 1369999999999999999865
No 60
>PRK14967 putative methyltransferase; Provisional
Probab=99.45 E-value=1.7e-12 Score=110.03 Aligned_cols=127 Identities=13% Similarity=0.089 Sum_probs=89.0
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...|||+|||+|.++..+++.. ...++|+|+++.+++.|++++... +. ++.++.+|+.+ .++++++|.
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~------~~-~~~~~~~d~~~----~~~~~~fD~ 104 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLA------GV-DVDVRRGDWAR----AVEFRPFDV 104 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHh------CC-eeEEEECchhh----hccCCCeeE
Confidence 4589999999999999999863 348999999999999998877543 33 58899999753 245678999
Q ss_pred EEEeCCCCccccc-------------cccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025492 146 MFFLFPDPHFKEK-------------NHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP 204 (252)
Q Consensus 146 i~~~fpdP~~k~~-------------h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~ 204 (252)
|+++.|-...... ..........+++++.++|||||.+++.+..........+.+...+
T Consensus 105 Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g 176 (223)
T PRK14967 105 VVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAG 176 (223)
T ss_pred EEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCC
Confidence 9998542111000 0001112345888999999999999987554433445556666554
No 61
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.45 E-value=2.8e-12 Score=111.71 Aligned_cols=131 Identities=12% Similarity=0.223 Sum_probs=94.4
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...|||+|||+|.++..++...|...++|+|+++.+++.|++++.. ....++.++.+|+... +.++++|.
T Consensus 109 ~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~------~~~~~i~~~~~d~~~~----~~~~~fD~ 178 (275)
T PRK09328 109 PLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKH------GLGARVEFLQGDWFEP----LPGGRFDL 178 (275)
T ss_pred CCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh------CCCCcEEEEEccccCc----CCCCceeE
Confidence 4589999999999999999999999999999999999999988751 2456899999997432 33578999
Q ss_pred EEEeCCCCcccc--------c-cccc-c--------ccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcc
Q 025492 146 MFFLFPDPHFKE--------K-NHRR-R--------VISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFE 207 (252)
Q Consensus 146 i~~~fpdP~~k~--------~-h~kr-r--------~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~ 207 (252)
|+.|.|---... + +... . -....+++.+.++|+|||.+++.+.+ .....+.+.+...+ |.
T Consensus 179 Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~-~~~~~~~~~l~~~g-f~ 256 (275)
T PRK09328 179 IVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY-DQGEAVRALLAAAG-FA 256 (275)
T ss_pred EEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc-hHHHHHHHHHHhCC-Cc
Confidence 999865210000 0 1000 0 11256888899999999999998765 34455666666543 44
Q ss_pred c
Q 025492 208 A 208 (252)
Q Consensus 208 ~ 208 (252)
.
T Consensus 257 ~ 257 (275)
T PRK09328 257 D 257 (275)
T ss_pred e
Confidence 3
No 62
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.45 E-value=1.1e-12 Score=109.11 Aligned_cols=102 Identities=12% Similarity=0.085 Sum_probs=75.5
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM 146 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i 146 (252)
..|||||||+|..+..+|++ +..|+|+|+|+.|++.+++++... +++ +.+..+|+.. .+ + ++++|.|
T Consensus 32 ~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~------~~~-v~~~~~d~~~-~~--~-~~~fD~I 98 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARE------NLP-LRTDAYDINA-AA--L-NEDYDFI 98 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHh------CCC-ceeEeccchh-cc--c-cCCCCEE
Confidence 47999999999999999987 578999999999999988766442 443 7777777642 22 3 4579999
Q ss_pred EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
+.+++-.+.... ....+++++.++|+|||.+++.+
T Consensus 99 ~~~~~~~~~~~~------~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 99 FSTVVFMFLQAG------RVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred EEecccccCCHH------HHHHHHHHHHHHhCCCcEEEEEE
Confidence 876543221100 12369999999999999966653
No 63
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.44 E-value=3.1e-12 Score=112.41 Aligned_cols=124 Identities=13% Similarity=0.164 Sum_probs=91.3
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccCCCCcccE
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
..|||+|||+|.+++.+|...|+..++|+|+|+.+++.|++++... ++. ++.++++|+.+. ++...+|.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~------~~~~~v~~~~~d~~~~----~~~~~fDl 185 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKN------QLEHRVEFIQSNLFEP----LAGQKIDI 185 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCcEEEEECchhcc----CcCCCccE
Confidence 4899999999999999999999899999999999999999987654 554 499999997542 33447999
Q ss_pred EEEeCCCCccc--------cccccc---------cccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHh
Q 025492 146 MFFLFPDPHFK--------EKNHRR---------RVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLE 201 (252)
Q Consensus 146 i~~~fpdP~~k--------~~h~kr---------r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~ 201 (252)
|+.|.|--... ..|..+ ......++..+.+.|+|||.+++.+.+ +....+.+.+.
T Consensus 186 IvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~-~q~~~~~~~~~ 257 (284)
T TIGR00536 186 IVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN-WQQKSLKELLR 257 (284)
T ss_pred EEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc-cHHHHHHHHHH
Confidence 99986521110 011111 012346889999999999999998864 34444555555
No 64
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.44 E-value=8.2e-13 Score=118.24 Aligned_cols=102 Identities=13% Similarity=0.174 Sum_probs=81.0
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...|||||||+|.++..+++..++.+++|+|+++.|++.|+++. ...|+.++.+|+.+ ++ ++++++|.
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~---------~~~~i~~i~gD~e~-lp--~~~~sFDv 181 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---------PLKECKIIEGDAED-LP--FPTDYADR 181 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhh---------hccCCeEEeccHHh-CC--CCCCceeE
Confidence 45899999999999999999888889999999999999887653 23578899999863 44 56789999
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
|+++..-.+... ....++++.++|+|||.+++..
T Consensus 182 VIs~~~L~~~~d--------~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 182 YVSAGSIEYWPD--------PQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred EEEcChhhhCCC--------HHHHHHHHHHhcCCCcEEEEEE
Confidence 987643322211 1258999999999999998864
No 65
>PRK04457 spermidine synthase; Provisional
Probab=99.44 E-value=1.9e-12 Score=112.49 Aligned_cols=109 Identities=16% Similarity=0.199 Sum_probs=85.6
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM 146 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i 146 (252)
..|||||||+|.++..+++..|+..+++||+++.+++.|++.+... ...++++++.+|+.+.+... +..+|.|
T Consensus 68 ~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~-----~~~~rv~v~~~Da~~~l~~~--~~~yD~I 140 (262)
T PRK04457 68 QHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELP-----ENGERFEVIEADGAEYIAVH--RHSTDVI 140 (262)
T ss_pred CEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCC-----CCCCceEEEECCHHHHHHhC--CCCCCEE
Confidence 4799999999999999999999999999999999999998765321 12468999999998666532 4689999
Q ss_pred EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
++..-++- .....+....|++.+.+.|+|||++++.
T Consensus 141 ~~D~~~~~----~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 141 LVDGFDGE----GIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred EEeCCCCC----CCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 98642211 1112344678999999999999999984
No 66
>PRK00811 spermidine synthase; Provisional
Probab=99.43 E-value=1.8e-12 Score=113.89 Aligned_cols=130 Identities=14% Similarity=0.160 Sum_probs=97.0
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...||+||||.|..+..+++..+..++++||+++.+++.|++.+..... ....-++++++.+|+...+.. .++.+|.
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~-~~~~d~rv~v~~~Da~~~l~~--~~~~yDv 153 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAG-GAYDDPRVELVIGDGIKFVAE--TENSFDV 153 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhcc-ccccCCceEEEECchHHHHhh--CCCcccE
Confidence 3479999999999999998765566899999999999999987754310 001246899999999876653 4678999
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCch----HHHHHHHHHHhc
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE----ELGDWMRSCLEN 202 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~----~~~~~~~~~~~~ 202 (252)
|++..++|+... ..+.+..|++.+.+.|+|||.+++.+... +....+.+.+.+
T Consensus 154 Ii~D~~dp~~~~----~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~ 210 (283)
T PRK00811 154 IIVDSTDPVGPA----EGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKE 210 (283)
T ss_pred EEECCCCCCCch----hhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHH
Confidence 999988887321 23456789999999999999999876432 334444445543
No 67
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.42 E-value=1.4e-12 Score=122.34 Aligned_cols=103 Identities=18% Similarity=0.370 Sum_probs=80.3
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...|||||||+|.++..+|+.. ++.++|+|+|+.+++.|+++... ...++.|+.+|+.. ++ ++++++|.
T Consensus 267 ~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~-------~~~~v~~~~~d~~~-~~--~~~~~fD~ 335 (475)
T PLN02336 267 GQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIG-------RKCSVEFEVADCTK-KT--YPDNSFDV 335 (475)
T ss_pred CCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhc-------CCCceEEEEcCccc-CC--CCCCCEEE
Confidence 4589999999999999999876 67999999999999988765421 23479999999763 32 56788999
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
|+....-.|... ...++++++++|||||.|++.+
T Consensus 336 I~s~~~l~h~~d--------~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 336 IYSRDTILHIQD--------KPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred EEECCcccccCC--------HHHHHHHHHHHcCCCeEEEEEE
Confidence 987543322211 1269999999999999999864
No 68
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.42 E-value=2e-12 Score=116.19 Aligned_cols=119 Identities=17% Similarity=0.205 Sum_probs=88.6
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM 146 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i 146 (252)
..|||||||+|.++..+++++|...++|+|+++.|++.|+.++... ++. ..++.+|+.. . + ++.+|.|
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n------~l~-~~~~~~D~~~---~-~-~~~fDlI 265 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAAN------GLE-GEVFASNVFS---D-I-KGRFDMI 265 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CCC-CEEEEccccc---c-c-CCCccEE
Confidence 4799999999999999999999999999999999999999887653 343 5677777642 1 2 5789999
Q ss_pred EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc-hHHHHHHHHHH
Q 025492 147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV-EELGDWMRSCL 200 (252)
Q Consensus 147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~-~~~~~~~~~~~ 200 (252)
++|+|-.+..... .-....+++.+.+.|||||.++++.+. ..|...+.+.+
T Consensus 266 vsNPPFH~g~~~~---~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~F 317 (342)
T PRK09489 266 ISNPPFHDGIQTS---LDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETF 317 (342)
T ss_pred EECCCccCCcccc---HHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHc
Confidence 9997753311100 012247999999999999999998864 34555444443
No 69
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.42 E-value=3.5e-12 Score=113.92 Aligned_cols=104 Identities=17% Similarity=0.146 Sum_probs=76.2
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
+..|||||||+|.++..++...+. .|+|||+|+.++..++...... ....|+.++.+|+. .++ + ++++|.
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~-----~~~~~i~~~~~d~e-~lp--~-~~~FD~ 192 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLL-----GNDQRAHLLPLGIE-QLP--A-LKAFDT 192 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhc-----CCCCCeEEEeCCHH-HCC--C-cCCcCE
Confidence 458999999999999999999765 5999999999886543321111 12357999999986 354 3 678999
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
|++..--.+.. --..+++++++.|+|||.+++.+
T Consensus 193 V~s~~vl~H~~--------dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 193 VFSMGVLYHRR--------SPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred EEECChhhccC--------CHHHHHHHHHHhcCCCcEEEEEE
Confidence 98743211110 11369999999999999999865
No 70
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.42 E-value=2.8e-12 Score=110.68 Aligned_cols=111 Identities=18% Similarity=0.166 Sum_probs=81.6
Q ss_pred CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCcc
Q 025492 65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQL 143 (252)
Q Consensus 65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~ 143 (252)
....|||||||+|.+++.+++..+ ..++|+|+++.+++.|++++... ++ .++.+..+| .++
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~------~~~~~~~~~~~~-----------~~f 180 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELN------GVELNVYLPQGD-----------LKA 180 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHc------CCCceEEEccCC-----------CCc
Confidence 356899999999999988777644 36999999999999999887542 33 223322221 268
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP 204 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~ 204 (252)
|.|+.|..... ...++.++.++|||||.+++.....+....+.+.+..++
T Consensus 181 D~Vvani~~~~-----------~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~G 230 (250)
T PRK00517 181 DVIVANILANP-----------LLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAG 230 (250)
T ss_pred CEEEEcCcHHH-----------HHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCC
Confidence 99988764222 135889999999999999998766666677777777665
No 71
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.42 E-value=1.2e-12 Score=114.12 Aligned_cols=106 Identities=25% Similarity=0.414 Sum_probs=75.2
Q ss_pred CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCcc
Q 025492 65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQL 143 (252)
Q Consensus 65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~ 143 (252)
++..|||||||.|.++..+|+++ +++++||.+|++..+.|++++... ++ .++.+...|..+ ++ ..+
T Consensus 62 ~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~------gl~~~v~v~~~D~~~-~~-----~~f 128 (273)
T PF02353_consen 62 PGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREA------GLEDRVEVRLQDYRD-LP-----GKF 128 (273)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCS------TSSSTEEEEES-GGG---------S-
T ss_pred CCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhc------CCCCceEEEEeeccc-cC-----CCC
Confidence 46699999999999999999998 889999999999999999887643 55 468999999763 33 289
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV 189 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~ 189 (252)
|.|+..-..-....+ -.+.+++.+.++|||||++++.+-.
T Consensus 129 D~IvSi~~~Ehvg~~------~~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRK------NYPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp SEEEEESEGGGTCGG------GHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred CEEEEEechhhcChh------HHHHHHHHHHHhcCCCcEEEEEecc
Confidence 998865322221111 1246999999999999999986543
No 72
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.41 E-value=2.4e-12 Score=115.42 Aligned_cols=114 Identities=18% Similarity=0.219 Sum_probs=86.3
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
+..|||+|||+|.+++.++.. +..++|+|+++.|++.|+.++... +..++.++++|+.. ++ +.++++|.
T Consensus 183 g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~------g~~~i~~~~~D~~~-l~--~~~~~~D~ 251 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHY------GIEDFFVKRGDATK-LP--LSSESVDA 251 (329)
T ss_pred cCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHh------CCCCCeEEecchhc-CC--cccCCCCE
Confidence 458999999999999987775 678999999999999999887654 67778999999874 54 44679999
Q ss_pred EEEeCCCCccccc-cccccccCHHHHHHHHHhhcCCcEEEEEeCch
Q 025492 146 MFFLFPDPHFKEK-NHRRRVISPHLLDEYAYVLGVGGIIYTITDVE 190 (252)
Q Consensus 146 i~~~fpdP~~k~~-h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~ 190 (252)
|+.+.|--..... .+...-....+++++.++|+|||++++.+...
T Consensus 252 Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 252 IATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred EEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 9998653211100 00000124679999999999999998887553
No 73
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.41 E-value=6.1e-12 Score=114.72 Aligned_cols=127 Identities=13% Similarity=0.152 Sum_probs=94.2
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...|||||||+|.+++.++...|+.+++|+|+|+.|++.|++++... +. ++.++++|+.+.. ....+.+|.
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~------g~-rV~fi~gDl~e~~--l~~~~~FDL 322 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL------GA-RVEFAHGSWFDTD--MPSEGKWDI 322 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CC-cEEEEEcchhccc--cccCCCccE
Confidence 34899999999999999999999999999999999999999987653 33 7999999975321 112457999
Q ss_pred EEEeCCCCcccc----------ccc---------cccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025492 146 MFFLFPDPHFKE----------KNH---------RRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP 204 (252)
Q Consensus 146 i~~~fpdP~~k~----------~h~---------krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~ 204 (252)
|++|.| +... ++. ........+++.+.+.|+|||.+++.... +..+.+.+.+...+
T Consensus 323 IVSNPP--YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~-~Q~e~V~~ll~~~G 397 (423)
T PRK14966 323 IVSNPP--YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF-DQGAAVRGVLAENG 397 (423)
T ss_pred EEECCC--CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc-cHHHHHHHHHHHCC
Confidence 999875 2111 011 01112346788888999999999987765 56667777777654
No 74
>PRK08317 hypothetical protein; Provisional
Probab=99.41 E-value=3.2e-12 Score=108.15 Aligned_cols=104 Identities=26% Similarity=0.387 Sum_probs=81.7
Q ss_pred CceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 66 KIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
...|||||||+|.++..++... |...++|+|+++.+++.|+++.. ....++.++.+|+.. ++ ++++.+|
T Consensus 20 ~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~-------~~~~~~~~~~~d~~~-~~--~~~~~~D 89 (241)
T PRK08317 20 GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA-------GLGPNVEFVRGDADG-LP--FPDGSFD 89 (241)
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh-------CCCCceEEEeccccc-CC--CCCCCce
Confidence 4589999999999999999987 77899999999999988876521 245689999999863 33 5578899
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
.|++...-.+... ...+++++.++|+|||.+++..
T Consensus 90 ~v~~~~~~~~~~~--------~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 90 AVRSDRVLQHLED--------PARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred EEEEechhhccCC--------HHHHHHHHHHHhcCCcEEEEEe
Confidence 9998653322211 1359999999999999998864
No 75
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=4.2e-12 Score=111.23 Aligned_cols=126 Identities=17% Similarity=0.305 Sum_probs=96.5
Q ss_pred eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEE
Q 025492 68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMF 147 (252)
Q Consensus 68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~ 147 (252)
.|||||||+|..++.+|...|+++|+|+|+|+.+++.|+.|+... ++.|+.++++|..+.+ .+.+|.|+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~------~l~~~~~~~~dlf~~~-----~~~fDlIV 181 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERN------GLVRVLVVQSDLFEPL-----RGKFDLIV 181 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHc------CCccEEEEeeeccccc-----CCceeEEE
Confidence 699999999999999999999999999999999999999988664 6677888888764322 23899999
Q ss_pred EeCCCCccccc----------c---------ccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcc
Q 025492 148 FLFPDPHFKEK----------N---------HRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFE 207 (252)
Q Consensus 148 ~~fpdP~~k~~----------h---------~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~ 207 (252)
.|.| +.... | ....-+...++..+.+.|+|||.+.+.... +..+.+.+.+...+.|.
T Consensus 182 sNPP--Yip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~-~q~~~v~~~~~~~~~~~ 257 (280)
T COG2890 182 SNPP--YIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL-TQGEAVKALFEDTGFFE 257 (280)
T ss_pred eCCC--CCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC-CcHHHHHHHHHhcCCce
Confidence 9975 11111 1 122335567999999999999999998763 34666777777766443
No 76
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.40 E-value=9.1e-12 Score=115.62 Aligned_cols=135 Identities=17% Similarity=0.226 Sum_probs=96.1
Q ss_pred CceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCcc--CCCCc
Q 025492 66 KIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNY--FEKGQ 142 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~--~~~~s 142 (252)
+..|||+|||+|..+..+|+.. +...++|+|+++.+++.+++++... ++.||.++.+|+.. +... +..++
T Consensus 253 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~------g~~~v~~~~~D~~~-~~~~~~~~~~~ 325 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL------GLKSIKILAADSRN-LLELKPQWRGY 325 (434)
T ss_pred cCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc------CCCeEEEEeCChhh-ccccccccccc
Confidence 5689999999999999999985 3568999999999999999988664 78899999999874 3321 23578
Q ss_pred ccEEEEeCCCC----ccccccccccc----------cCHHHHHHHHHhhcCCcEEEEEe--Cch-HHHHHHHHHHhcCCC
Q 025492 143 LTKMFFLFPDP----HFKEKNHRRRV----------ISPHLLDEYAYVLGVGGIIYTIT--DVE-ELGDWMRSCLENHPM 205 (252)
Q Consensus 143 ~d~i~~~fpdP----~~k~~h~krr~----------~~~~~l~~~~~~LkpgG~l~~~t--d~~-~~~~~~~~~~~~~~~ 205 (252)
+|.|+++-|.- +.+....+.+. .+..+|..+.++|||||+|+.+| -.. +--.-+...+..+|.
T Consensus 326 fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~ 405 (434)
T PRK14901 326 FDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPD 405 (434)
T ss_pred CCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCC
Confidence 99999976631 11111111111 25689999999999999998776 222 222333344456666
Q ss_pred cc
Q 025492 206 FE 207 (252)
Q Consensus 206 ~~ 207 (252)
|+
T Consensus 406 ~~ 407 (434)
T PRK14901 406 WK 407 (434)
T ss_pred cE
Confidence 65
No 77
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.39 E-value=6.8e-12 Score=116.81 Aligned_cols=136 Identities=20% Similarity=0.276 Sum_probs=94.9
Q ss_pred CceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 66 KIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
...|||+|||+|..+..+|+.. +...++|+|+++.+++.+++++... ++.|+.++++|+.. +...++ +++|
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~------g~~~v~~~~~D~~~-~~~~~~-~~fD 322 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRL------GLTNIETKALDARK-VHEKFA-EKFD 322 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCeEEEEeCCccc-ccchhc-ccCC
Confidence 4589999999999999999985 6779999999999999999887654 77789999999874 322233 6899
Q ss_pred EEEEeCCCCccc--ccccc-------cc-----ccCHHHHHHHHHhhcCCcEEEEEeCc--hHHHHHHHH-HHhcCCCcc
Q 025492 145 KMFFLFPDPHFK--EKNHR-------RR-----VISPHLLDEYAYVLGVGGIIYTITDV--EELGDWMRS-CLENHPMFE 207 (252)
Q Consensus 145 ~i~~~fpdP~~k--~~h~k-------rr-----~~~~~~l~~~~~~LkpgG~l~~~td~--~~~~~~~~~-~~~~~~~~~ 207 (252)
.|+++.|..-.. .++.. .. -.+..+|+.+.++|||||.++..|-. .+-.+...+ .+..++.|+
T Consensus 323 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~ 402 (444)
T PRK14902 323 KILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFE 402 (444)
T ss_pred EEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcE
Confidence 999986622100 00000 00 02456899999999999999976532 222233333 345555565
Q ss_pred cc
Q 025492 208 AL 209 (252)
Q Consensus 208 ~~ 209 (252)
.+
T Consensus 403 ~~ 404 (444)
T PRK14902 403 LV 404 (444)
T ss_pred Ee
Confidence 44
No 78
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.38 E-value=1.7e-13 Score=116.17 Aligned_cols=111 Identities=19% Similarity=0.325 Sum_probs=84.2
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc----cEEEEeCCcccccCccCCCCc
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ----NISVVRTNSMKYIPNYFEKGQ 142 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~----nv~~~~~da~~~l~~~~~~~s 142 (252)
..|||+|||.|.++..||+. +.+|+|||++++||+.|+.+ +.. ...... .+.+.+.|+.. +. +.
T Consensus 91 ~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h-~~~---dP~~~~~~~y~l~~~~~~~E~-~~-----~~ 158 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEH-KKM---DPVLEGAIAYRLEYEDTDVEG-LT-----GK 158 (282)
T ss_pred ceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHh-hhc---Cchhccccceeeehhhcchhh-cc-----cc
Confidence 35999999999999999999 67999999999999999887 332 111112 36677777753 32 23
Q ss_pred ccEEEE-----eCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhc
Q 025492 143 LTKMFF-----LFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLEN 202 (252)
Q Consensus 143 ~d~i~~-----~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~ 202 (252)
||.|.+ +.-||. .|++.+.+.|||||.+++.|.++....|....+.+
T Consensus 159 fDaVvcsevleHV~dp~-------------~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~ 210 (282)
T KOG1270|consen 159 FDAVVCSEVLEHVKDPQ-------------EFLNCLSALLKPNGRLFITTINRTILSFAGTIFLA 210 (282)
T ss_pred cceeeeHHHHHHHhCHH-------------HHHHHHHHHhCCCCceEeeehhhhHHHhhccccHH
Confidence 787775 344554 69999999999999999999998877666655543
No 79
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.38 E-value=4.2e-12 Score=111.72 Aligned_cols=102 Identities=14% Similarity=0.151 Sum_probs=77.6
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM 146 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i 146 (252)
..|||||||+|..+..+|+. +..|+|+|+|+.+++.+++++... ++ ++.+...|+.. .. + ++++|.|
T Consensus 122 ~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~------~l-~v~~~~~D~~~-~~--~-~~~fD~I 188 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKE------NL-NIRTGLYDINS-AS--I-QEEYDFI 188 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHc------CC-ceEEEEechhc-cc--c-cCCccEE
Confidence 38999999999999999997 578999999999999998776543 55 78998888753 22 2 6789999
Q ss_pred EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
+.++.-.+.... ....+++++.++|+|||.+++..
T Consensus 189 ~~~~vl~~l~~~------~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 189 LSTVVLMFLNRE------RIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred EEcchhhhCCHH------HHHHHHHHHHHhcCCCcEEEEEE
Confidence 876532221100 12369999999999999976653
No 80
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=1e-11 Score=108.14 Aligned_cols=122 Identities=16% Similarity=0.251 Sum_probs=92.1
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...|||+|||.|.+++.+|+.+|...++-+|++..+++.|+.++.. ++.+|..+...|..+. . .+.+|.
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~------N~~~~~~v~~s~~~~~----v-~~kfd~ 227 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAA------NGVENTEVWASNLYEP----V-EGKFDL 227 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHH------cCCCccEEEEeccccc----c-cccccE
Confidence 3489999999999999999999999999999999999999999866 3677776777776432 2 238999
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc-hHHHHHHHHHHh
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV-EELGDWMRSCLE 201 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~-~~~~~~~~~~~~ 201 (252)
|+.|.|-. ..+.--.-+..++++...+.|++||.|.|+..- ..|...|.+.|.
T Consensus 228 IisNPPfh---~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg 281 (300)
T COG2813 228 IISNPPFH---AGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG 281 (300)
T ss_pred EEeCCCcc---CCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC
Confidence 99987642 222111111237999999999999999999863 355555555553
No 81
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.37 E-value=7.9e-12 Score=115.81 Aligned_cols=136 Identities=17% Similarity=0.277 Sum_probs=94.8
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
+..|||+|||+|..+..+++..++..++|+|+++.+++.+++++... ++. +.++++|+.. +...++.+++|.
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~------g~~-~~~~~~D~~~-~~~~~~~~~fD~ 316 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL------GLK-ATVIVGDARD-PAQWWDGQPFDR 316 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc------CCC-eEEEEcCccc-chhhcccCCCCE
Confidence 56899999999999999999987778999999999999999887653 443 7899999864 333345678999
Q ss_pred EEEeCCCCccc--ccc--ccc----------cccCHHHHHHHHHhhcCCcEEEEEeC--chHHH-HHHHHHHhcCCCccc
Q 025492 146 MFFLFPDPHFK--EKN--HRR----------RVISPHLLDEYAYVLGVGGIIYTITD--VEELG-DWMRSCLENHPMFEA 208 (252)
Q Consensus 146 i~~~fpdP~~k--~~h--~kr----------r~~~~~~l~~~~~~LkpgG~l~~~td--~~~~~-~~~~~~~~~~~~~~~ 208 (252)
|+++.|..-.. .++ .+. .-.+..++..+.++|||||.+++.|- ...-. +.+...+..++.|+.
T Consensus 317 Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~~~~~~ 396 (427)
T PRK10901 317 ILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARHPDAEL 396 (427)
T ss_pred EEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhCCCCEE
Confidence 99987643100 000 000 01245799999999999999998773 12122 222334445555543
Q ss_pred c
Q 025492 209 L 209 (252)
Q Consensus 209 ~ 209 (252)
+
T Consensus 397 ~ 397 (427)
T PRK10901 397 L 397 (427)
T ss_pred e
Confidence 3
No 82
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.37 E-value=1e-11 Score=104.33 Aligned_cols=98 Identities=19% Similarity=0.195 Sum_probs=79.1
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...|||||||+|.++..++... ..++|+|+++.+++.|++++... ++.|+.++.+|+.+.+ ...+.+|.
T Consensus 79 ~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~~---~~~~~fD~ 147 (212)
T PRK00312 79 GDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQL------GLHNVSVRHGDGWKGW---PAYAPFDR 147 (212)
T ss_pred CCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHC------CCCceEEEECCcccCC---CcCCCcCE
Confidence 4589999999999999888885 37999999999999999887653 7788999999975322 22478999
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD 188 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td 188 (252)
|++..+.++ +.+.+.+.|+|||.+++...
T Consensus 148 I~~~~~~~~--------------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 148 ILVTAAAPE--------------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EEEccCchh--------------hhHHHHHhcCCCcEEEEEEc
Confidence 998764332 55678899999999998764
No 83
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.37 E-value=1.5e-11 Score=108.37 Aligned_cols=116 Identities=16% Similarity=0.170 Sum_probs=87.3
Q ss_pred CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccCCCCcc
Q 025492 65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYFEKGQL 143 (252)
Q Consensus 65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~~~~s~ 143 (252)
++..|||+|||+|.+++.+++.. ...++|+|+++.+++.|++++... ++. ++.+...+.. . ..++.+
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n------~~~~~~~~~~~~~~---~--~~~~~f 226 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELN------QVSDRLQVKLIYLE---Q--PIEGKA 226 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHc------CCCcceEEEecccc---c--ccCCCc
Confidence 35699999999999999888763 458999999999999999887543 333 4666666532 1 235689
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcC
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENH 203 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~ 203 (252)
|.|+.|+.... ...++..+.++|||||.|++..-..+....+.+.+...
T Consensus 227 DlVvan~~~~~-----------l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~ 275 (288)
T TIGR00406 227 DVIVANILAEV-----------IKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG 275 (288)
T ss_pred eEEEEecCHHH-----------HHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc
Confidence 99999864322 13589999999999999999876666667777777654
No 84
>PLN03075 nicotianamine synthase; Provisional
Probab=99.36 E-value=9.4e-12 Score=108.99 Aligned_cols=107 Identities=9% Similarity=0.153 Sum_probs=79.8
Q ss_pred CceEEEEcCcccHH--HHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCc
Q 025492 66 KIQFADIGCGFGGL--LISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQ 142 (252)
Q Consensus 66 ~~~vLDIGcG~G~~--~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s 142 (252)
...|+|||||.|.+ ++.++...|+..++|+|+++++++.|++.+... .++ ++++|..+|+.+ +.. ..+.
T Consensus 124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~-----~gL~~rV~F~~~Da~~-~~~--~l~~ 195 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD-----PDLSKRMFFHTADVMD-VTE--SLKE 195 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc-----cCccCCcEEEECchhh-ccc--ccCC
Confidence 45899999998844 344455689999999999999999999877431 245 459999999875 221 2467
Q ss_pred ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
+|.|++.---.|.+..+ ..+++.+++.|+|||.+++.+
T Consensus 196 FDlVF~~ALi~~dk~~k-------~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 196 YDVVFLAALVGMDKEEK-------VKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cCEEEEecccccccccH-------HHHHHHHHHhcCCCcEEEEec
Confidence 99999873223322222 269999999999999999987
No 85
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.36 E-value=5.8e-12 Score=111.85 Aligned_cols=104 Identities=13% Similarity=0.056 Sum_probs=74.9
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
+..|||||||+|.++..++...+. .++|||.|+.|+..+....... ....++.+..+++.+ ++. ..+||.
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~-----~~~~~v~~~~~~ie~-lp~---~~~FD~ 191 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLL-----DNDKRAILEPLGIEQ-LHE---LYAFDT 191 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHh-----ccCCCeEEEECCHHH-CCC---CCCcCE
Confidence 458999999999999999988653 7999999999986643321111 123578888888763 442 358999
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
|+++..-.|.. --..+|++++++|+|||.|++.|
T Consensus 192 V~s~gvL~H~~--------dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 192 VFSMGVLYHRK--------SPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred EEEcchhhccC--------CHHHHHHHHHHhcCCCCEEEEEE
Confidence 98764322211 01269999999999999999875
No 86
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.36 E-value=2e-11 Score=103.04 Aligned_cols=153 Identities=15% Similarity=0.145 Sum_probs=98.9
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...|||||||+|.++..+++.. ..++|+|+++.+++.++.++... +..++.+...|+.+.... .++.+|.
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~------~~~~~~~~~~d~~~~~~~--~~~~~D~ 115 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKD------PLLKIEYRCTSVEDLAEK--GAKSFDV 115 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHc------CCCceEEEeCCHHHhhcC--CCCCccE
Confidence 4589999999999999998874 46999999999999888776542 444789999998643221 1478999
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcccccccccccCccccCCCC
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSS 225 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 225 (252)
|+++..-.+... ...+++.+.++|+|||.+++.+.+.+...++...+.....+...+.. .........
T Consensus 116 i~~~~~l~~~~~--------~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 183 (224)
T TIGR01983 116 VTCMEVLEHVPD--------PQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKG----THDWEKFIK 183 (224)
T ss_pred EEehhHHHhCCC--------HHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCC----cCChhhcCC
Confidence 987532111110 12599999999999999998876554444443333222112111111 000111123
Q ss_pred CCHHHHHHHHcCCCe
Q 025492 226 ATEEGQKVARNGGQT 240 (252)
Q Consensus 226 ~t~~e~~~~~~G~~i 240 (252)
..+..+.....|.+|
T Consensus 184 ~~~l~~~l~~~G~~i 198 (224)
T TIGR01983 184 PSELTSWLESAGLRV 198 (224)
T ss_pred HHHHHHHHHHcCCee
Confidence 345777888888876
No 87
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.35 E-value=8.2e-12 Score=108.60 Aligned_cols=132 Identities=17% Similarity=0.179 Sum_probs=93.1
Q ss_pred CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
+..|||+|||+|..+..+|+... ...++|+|+++.+++.+++++... ++.|+.++..|+.. +.. ..+.+|
T Consensus 72 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~------g~~~v~~~~~D~~~-~~~--~~~~fD 142 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRC------GVLNVAVTNFDGRV-FGA--AVPKFD 142 (264)
T ss_pred cCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc------CCCcEEEecCCHHH-hhh--hccCCC
Confidence 45899999999999999999864 358999999999999999988664 77899999999863 332 235699
Q ss_pred EEEEeCCCCc---------ccccccccc-----ccCHHHHHHHHHhhcCCcEEEEEeC--chHHHHHHHHHH-hcCCCc
Q 025492 145 KMFFLFPDPH---------FKEKNHRRR-----VISPHLLDEYAYVLGVGGIIYTITD--VEELGDWMRSCL-ENHPMF 206 (252)
Q Consensus 145 ~i~~~fpdP~---------~k~~h~krr-----~~~~~~l~~~~~~LkpgG~l~~~td--~~~~~~~~~~~~-~~~~~~ 206 (252)
.|+++-|..- .+.....+. ..+..+|+.+.+.|||||+|+..|= ..+--+...+.+ ..++.+
T Consensus 143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~~~~~ 221 (264)
T TIGR00446 143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEKRPDV 221 (264)
T ss_pred EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHhCCCc
Confidence 9999766321 110011111 1346799999999999999998863 233334444444 334444
No 88
>PRK05785 hypothetical protein; Provisional
Probab=99.35 E-value=9e-12 Score=105.96 Aligned_cols=94 Identities=13% Similarity=0.171 Sum_probs=72.2
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...|||||||+|.++..+++.. +..++|+|+|++|++.|+.+ ..++++|+. .++ ++++++|.
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--------------~~~~~~d~~-~lp--~~d~sfD~ 113 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--------------DDKVVGSFE-ALP--FRDKSFDV 113 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--------------cceEEechh-hCC--CCCCCEEE
Confidence 3589999999999999999987 57899999999999887542 135678886 455 77899999
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCc-EEEE
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGG-IIYT 185 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG-~l~~ 185 (252)
|++.+.-.+... ....+++++|+|||.+ .+.+
T Consensus 114 v~~~~~l~~~~d--------~~~~l~e~~RvLkp~~~ile~ 146 (226)
T PRK05785 114 VMSSFALHASDN--------IEKVIAEFTRVSRKQVGFIAM 146 (226)
T ss_pred EEecChhhccCC--------HHHHHHHHHHHhcCceEEEEe
Confidence 998775333211 2369999999999953 4444
No 89
>PLN02366 spermidine synthase
Probab=99.35 E-value=1.7e-11 Score=108.56 Aligned_cols=129 Identities=15% Similarity=0.161 Sum_probs=96.4
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...||+||||.|..+..+++..+...++.||+++.+++.|++.+.... ....-++++++.+|+...+.. .+++.+|.
T Consensus 92 pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~--~~~~dpRv~vi~~Da~~~l~~-~~~~~yDv 168 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLA--VGFDDPRVNLHIGDGVEFLKN-APEGTYDA 168 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhc--cccCCCceEEEEChHHHHHhh-ccCCCCCE
Confidence 358999999999999999876444689999999999999988765431 011246899999999766543 34568999
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc----hHHHHHHHHHHh
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV----EELGDWMRSCLE 201 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~----~~~~~~~~~~~~ 201 (252)
|++..++|+.. ...+....|++.+.+.|+|||.+++.+.+ .+.+..+.+.+.
T Consensus 169 Ii~D~~dp~~~----~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~ 224 (308)
T PLN02366 169 IIVDSSDPVGP----AQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICR 224 (308)
T ss_pred EEEcCCCCCCc----hhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHH
Confidence 99999998732 23456678999999999999999886654 333344444444
No 90
>PRK01581 speE spermidine synthase; Validated
Probab=99.34 E-value=1.1e-11 Score=111.02 Aligned_cols=131 Identities=12% Similarity=0.133 Sum_probs=96.6
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHH--HHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKER--ILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~--~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
..||+||||.|..+..+.+..+...+++||+++.+++.|+.. +..... ....-++++++.+|+.+.+.. ..+.+|
T Consensus 152 krVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~-~~~~DpRV~vvi~Da~~fL~~--~~~~YD 228 (374)
T PRK01581 152 KRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNK-SAFFDNRVNVHVCDAKEFLSS--PSSLYD 228 (374)
T ss_pred CEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhcc-ccCCCCceEEEECcHHHHHHh--cCCCcc
Confidence 489999999999888888765567999999999999998852 111100 011346899999999876653 356899
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHH----HHHHHHHhcC
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELG----DWMRSCLENH 203 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~----~~~~~~~~~~ 203 (252)
.|++.+|||... .-.++...+|++.+.+.|+|||.+++.+....+. ..+...+...
T Consensus 229 VIIvDl~DP~~~---~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~a 288 (374)
T PRK01581 229 VIIIDFPDPATE---LLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHA 288 (374)
T ss_pred EEEEcCCCcccc---chhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHh
Confidence 999999998632 2245566789999999999999999987655433 3344455443
No 91
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.34 E-value=1.7e-11 Score=115.59 Aligned_cols=127 Identities=16% Similarity=0.184 Sum_probs=93.1
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCcccE
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
..|||||||+|.+++.+|...|+..++|+|+|+.+++.|++++... ++ .++.++++|+.+. ++.+.+|.
T Consensus 140 ~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~------~l~~~v~~~~~D~~~~----~~~~~fDl 209 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKY------EVTDRIQIIHSNWFEN----IEKQKFDF 209 (506)
T ss_pred CEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHc------CCccceeeeecchhhh----CcCCCccE
Confidence 4799999999999999999999999999999999999999887553 44 4799999997532 34568999
Q ss_pred EEEeCCCCcccc---------cccc---------ccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025492 146 MFFLFPDPHFKE---------KNHR---------RRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP 204 (252)
Q Consensus 146 i~~~fpdP~~k~---------~h~k---------rr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~ 204 (252)
|++|.|=-.... .+.. ..-....+++.+.++|+|||.+++.+.. ...+.+.+.+...+
T Consensus 210 IvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~-~q~~~v~~~~~~~g 285 (506)
T PRK01544 210 IVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF-KQEEAVTQIFLDHG 285 (506)
T ss_pred EEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC-chHHHHHHHHHhcC
Confidence 999865111000 0110 1112345788889999999999987643 45566666666554
No 92
>PHA03411 putative methyltransferase; Provisional
Probab=99.33 E-value=1.3e-11 Score=106.85 Aligned_cols=113 Identities=9% Similarity=0.072 Sum_probs=85.1
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...|||+|||+|.+++.++.+.+...++|+|+++.|++.|+++ .+++.++++|+.+. .....+|.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n-----------~~~v~~v~~D~~e~----~~~~kFDl 129 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRL-----------LPEAEWITSDVFEF----ESNEKFDV 129 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-----------CcCCEEEECchhhh----cccCCCcE
Confidence 3489999999999999999987778999999999999887653 34788999998742 23568999
Q ss_pred EEEeCCCCccccccccc------------cccCHHHHHHHHHhhcCCcEEEEEeCchHHH
Q 025492 146 MFFLFPDPHFKEKNHRR------------RVISPHLLDEYAYVLGVGGIIYTITDVEELG 193 (252)
Q Consensus 146 i~~~fpdP~~k~~h~kr------------r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~ 193 (252)
|+.|.|--+......+. .+.-..++.....+|+|+|.+.++.+...++
T Consensus 130 IIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y 189 (279)
T PHA03411 130 VISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYY 189 (279)
T ss_pred EEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccc
Confidence 99987644322111111 1123578999999999999999987776654
No 93
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.33 E-value=1.7e-11 Score=108.56 Aligned_cols=111 Identities=11% Similarity=0.097 Sum_probs=76.2
Q ss_pred ceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCc--c
Q 025492 67 IQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQ--L 143 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s--~ 143 (252)
..|||+|||+|..+..|++..+ ...|+|||+|++|++.|.+++... ...-++.++++|+.+.++ ++... -
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~-----~p~~~v~~i~gD~~~~~~--~~~~~~~~ 137 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD-----YPQLEVHGICADFTQPLA--LPPEPAAG 137 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh-----CCCceEEEEEEcccchhh--hhcccccC
Confidence 4799999999999999999976 578999999999999998876542 112347788999864332 11111 1
Q ss_pred cEEEEe--CCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCch
Q 025492 144 TKMFFL--FPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE 190 (252)
Q Consensus 144 d~i~~~--fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~ 190 (252)
+.+++. .+..+... --...+|+.++++|+|||.|+|..|..
T Consensus 138 ~~~~~~~gs~~~~~~~------~e~~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 138 RRLGFFPGSTIGNFTP------EEAVAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred CeEEEEecccccCCCH------HHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence 232222 22222110 012369999999999999999977643
No 94
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.32 E-value=2.1e-11 Score=112.97 Aligned_cols=136 Identities=13% Similarity=0.216 Sum_probs=97.2
Q ss_pred CceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 66 KIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
+..|||+|||+|..+..+|... +...++|+|+++.+++.+++++... ++.|+.++.+|+.. ++. +.+++||
T Consensus 238 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~------g~~~v~~~~~Da~~-l~~-~~~~~fD 309 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRL------KLSSIEIKIADAER-LTE-YVQDTFD 309 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHc------CCCeEEEEECchhh-hhh-hhhccCC
Confidence 4589999999999999999985 4678999999999999999988664 77889999999874 432 2356899
Q ss_pred EEEEeCCCCccc--ccc--cccc----------ccCHHHHHHHHHhhcCCcEEEEEeC--chHHHHHHHHHH-hcCCCcc
Q 025492 145 KMFFLFPDPHFK--EKN--HRRR----------VISPHLLDEYAYVLGVGGIIYTITD--VEELGDWMRSCL-ENHPMFE 207 (252)
Q Consensus 145 ~i~~~fpdP~~k--~~h--~krr----------~~~~~~l~~~~~~LkpgG~l~~~td--~~~~~~~~~~~~-~~~~~~~ 207 (252)
.|++.-|.--.. .++ .+.+ -.+..+|..+.+.|||||.++++|= ..+-.+...+.+ ..+|.|.
T Consensus 310 ~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~~~~ 389 (431)
T PRK14903 310 RILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQKDAE 389 (431)
T ss_pred EEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHhCCCcE
Confidence 999976642110 000 0111 1356789999999999999998763 233344444443 4466665
Q ss_pred cc
Q 025492 208 AL 209 (252)
Q Consensus 208 ~~ 209 (252)
.+
T Consensus 390 ~~ 391 (431)
T PRK14903 390 VI 391 (431)
T ss_pred Ee
Confidence 33
No 95
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.32 E-value=2.2e-11 Score=103.38 Aligned_cols=106 Identities=21% Similarity=0.344 Sum_probs=81.2
Q ss_pred CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
...|||||||+|.++..++...| ...++|+|+++.+++.+++++... ....++.++.+|+.. ++ +.++++|
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-----~~~~~~~~~~~d~~~-~~--~~~~~~D 123 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDL-----GLSGNVEFVQGDAEA-LP--FPDNSFD 123 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccc-----ccccCeEEEeccccc-CC--CCCCCcc
Confidence 45899999999999999999987 689999999999999988766431 123579999999864 33 4567899
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
.|++.+.-.+.. -...+++.+.++|+|||.+++..
T Consensus 124 ~I~~~~~l~~~~--------~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 124 AVTIAFGLRNVP--------DIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred EEEEecccccCC--------CHHHHHHHHHHhccCCcEEEEEE
Confidence 998754321111 12368999999999999998753
No 96
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.32 E-value=1.1e-11 Score=106.03 Aligned_cols=103 Identities=17% Similarity=0.253 Sum_probs=82.8
Q ss_pred CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccC---CC
Q 025492 66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYF---EK 140 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~---~~ 140 (252)
...|||||||+|..++.+|...+ +..++++|+++++++.|++++... ++ .+++++.+|+.+.++... +.
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~------gl~~~i~~~~gda~~~L~~l~~~~~~ 142 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA------GVDHKINFIQSDALSALDQLLNNDPK 142 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCcEEEEEccHHHHHHHHHhCCCC
Confidence 44899999999999999998854 679999999999999999988764 44 479999999987665322 24
Q ss_pred CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025492 141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT 185 (252)
Q Consensus 141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~ 185 (252)
+++|.|++.-..+. ...+++.+.+.|+|||.+++
T Consensus 143 ~~fD~VfiDa~k~~-----------y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 143 PEFDFAFVDADKPN-----------YVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred CCCCEEEECCCHHH-----------HHHHHHHHHHhcCCCeEEEE
Confidence 68999998653221 22589999999999998876
No 97
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.31 E-value=2.4e-11 Score=101.99 Aligned_cols=103 Identities=22% Similarity=0.379 Sum_probs=80.7
Q ss_pred CceEEEEcCcccHHHHHHHHHCCC-CeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPE-VLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~-~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
...|||+|||+|.++..+++..|. ..++|+|+++.+++.++++.. ...++.++.+|+.+ ++ ++++.+|
T Consensus 40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--------~~~~i~~~~~d~~~-~~--~~~~~~D 108 (223)
T TIGR01934 40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--------LPLNIEFIQADAEA-LP--FEDNSFD 108 (223)
T ss_pred CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--------cCCCceEEecchhc-CC--CCCCcEE
Confidence 458999999999999999999886 789999999999988876542 24578999999874 33 4567899
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
.|++++..-+... ...+++.+.+.|+|||.+++..
T Consensus 109 ~i~~~~~~~~~~~--------~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 109 AVTIAFGLRNVTD--------IQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred EEEEeeeeCCccc--------HHHHHHHHHHHcCCCcEEEEEE
Confidence 9987653222111 1269999999999999999865
No 98
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.31 E-value=3.3e-11 Score=105.15 Aligned_cols=116 Identities=15% Similarity=0.185 Sum_probs=90.4
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM 146 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i 146 (252)
..||+||||+|.++..+++..+...++++|+++.+++.|++.+.... .....+++.++.+|+...+... ++.+|.|
T Consensus 74 ~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~--~~~~~~~v~i~~~D~~~~l~~~--~~~yDvI 149 (270)
T TIGR00417 74 KHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLA--GSYDDPRVDLQIDDGFKFLADT--ENTFDVI 149 (270)
T ss_pred CEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhc--ccccCCceEEEECchHHHHHhC--CCCccEE
Confidence 38999999999999998887666789999999999999988765431 0112357899999987656432 5789999
Q ss_pred EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCch
Q 025492 147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE 190 (252)
Q Consensus 147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~ 190 (252)
++..++|+.. ...+....+++.+.+.|+|||.+++.+...
T Consensus 150 i~D~~~~~~~----~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~ 189 (270)
T TIGR00417 150 IVDSTDPVGP----AETLFTKEFYELLKKALNEDGIFVAQSESP 189 (270)
T ss_pred EEeCCCCCCc----ccchhHHHHHHHHHHHhCCCcEEEEcCCCc
Confidence 9998887632 223456789999999999999999976543
No 99
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.31 E-value=2.8e-11 Score=107.79 Aligned_cols=100 Identities=20% Similarity=0.264 Sum_probs=79.3
Q ss_pred CceEEEEcCcccHHHHHHHHHCCC-CeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPE-VLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~-~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
...|||||||+|.++..+|+..+. ..++|+|+++.+++.|++++... +.+|+.++.+|+.+.+. ..+.+|
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~------g~~nV~~i~gD~~~~~~---~~~~fD 151 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRL------GIENVIFVCGDGYYGVP---EFAPYD 151 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc------CCCcEEEEeCChhhccc---ccCCcc
Confidence 468999999999999999998753 47999999999999999887654 67899999999864332 235799
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD 188 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td 188 (252)
.|++.+..+ .....+.+.|+|||.+++..+
T Consensus 152 ~Ii~~~g~~--------------~ip~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 152 VIFVTVGVD--------------EVPETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred EEEECCchH--------------HhHHHHHHhcCCCCEEEEEeC
Confidence 999865322 244567789999999988654
No 100
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.30 E-value=1.4e-11 Score=103.54 Aligned_cols=119 Identities=13% Similarity=0.047 Sum_probs=79.6
Q ss_pred CceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccc--cC---ccCC
Q 025492 66 KIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKY--IP---NYFE 139 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~--l~---~~~~ 139 (252)
...|||||||+|.++..+++.. +...++|||+++ | ...+++.++++|+... ++ ..+.
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------------~~~~~v~~i~~D~~~~~~~~~i~~~~~ 114 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------------DPIVGVDFLQGDFRDELVLKALLERVG 114 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------------cCCCCcEEEecCCCChHHHHHHHHHhC
Confidence 4589999999999999999986 457999999987 1 1346799999998641 10 1245
Q ss_pred CCcccEEEEeCCCCccccc---cccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHh
Q 025492 140 KGQLTKMFFLFPDPHFKEK---NHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLE 201 (252)
Q Consensus 140 ~~s~d~i~~~fpdP~~k~~---h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~ 201 (252)
++++|.|+.+....|.... +...-.....+|+++.++|+|||.|++.+-..+.+......+.
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~ 179 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIR 179 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHH
Confidence 7889999987632221110 0000001246899999999999999996543333333344443
No 101
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.30 E-value=8.2e-12 Score=102.47 Aligned_cols=100 Identities=14% Similarity=0.281 Sum_probs=73.8
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...+||+|||.|.++..||.+. ..++++|+++.+++.|++++ .+.+||.++++|+. ...+++.||.
T Consensus 44 y~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl--------~~~~~V~~~~~dvp----~~~P~~~FDL 109 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERL--------AGLPHVEWIQADVP----EFWPEGRFDL 109 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHT--------TT-SSEEEEES-TT----T---SS-EEE
T ss_pred cceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhc--------CCCCCeEEEECcCC----CCCCCCCeeE
Confidence 3589999999999999999996 37999999999999998766 35689999999975 3456899999
Q ss_pred EEEe----CCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025492 146 MFFL----FPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD 188 (252)
Q Consensus 146 i~~~----fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td 188 (252)
|++. |-++... -..+++.+...|+|||.+++.+-
T Consensus 110 IV~SEVlYYL~~~~~---------L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 110 IVLSEVLYYLDDAED---------LRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp EEEES-GGGSSSHHH---------HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEehHhHcCCCHHH---------HHHHHHHHHHHhCCCCEEEEEEe
Confidence 9863 3333210 12488999999999999999874
No 102
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.30 E-value=1.2e-11 Score=104.14 Aligned_cols=107 Identities=15% Similarity=0.106 Sum_probs=71.6
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhc------CCCCcccEEEEeCCcccccCccCC
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVS------NPGQYQNISVVRTNSMKYIPNYFE 139 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~------~~~~~~nv~~~~~da~~~l~~~~~ 139 (252)
+..|||+|||.|..++.||++ +..|+|||+|+.+++.+.......... +.....+|.++++|+.+ ++. ..
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~-~~~-~~ 110 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFA-LTA-AD 110 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCC-CCc-cc
Confidence 458999999999999999998 789999999999998764321000000 00012469999999864 331 11
Q ss_pred CCcccEEEE-----eCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 140 KGQLTKMFF-----LFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 140 ~~s~d~i~~-----~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
.+.+|.|+- .+|.+ ....+++.+.++|||||++++.+
T Consensus 111 ~~~fD~i~D~~~~~~l~~~-----------~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEE-----------MRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred CCCcCEEEechhhccCCHH-----------HHHHHHHHHHHHcCCCCeEEEEE
Confidence 234566552 22211 12359999999999999877764
No 103
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.30 E-value=8e-11 Score=96.38 Aligned_cols=152 Identities=18% Similarity=0.137 Sum_probs=103.4
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
+.+|||+|||.|.++..|.+. .++...|||++++.+..+.+ .| +.++++|+.+.|. .|++++||.
T Consensus 14 gsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~----------rG---v~Viq~Dld~gL~-~f~d~sFD~ 78 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVA----------RG---VSVIQGDLDEGLA-DFPDQSFDY 78 (193)
T ss_pred CCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHH----------cC---CCEEECCHHHhHh-hCCCCCccE
Confidence 569999999999999988886 58899999999997765433 23 6699999988776 488999999
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHH-hc-CCCcccccccccccCccccCC
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCL-EN-HPMFEALTKEELEADPVVKLL 223 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~p~~~~~ 223 (252)
|+++-.-..... -..+|+++. +-|...+++..|-.+...-...+ .. -|.=...+.++|.... +
T Consensus 79 VIlsqtLQ~~~~--------P~~vL~Eml---RVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPN----i 143 (193)
T PF07021_consen 79 VILSQTLQAVRR--------PDEVLEEML---RVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPN----I 143 (193)
T ss_pred EehHhHHHhHhH--------HHHHHHHHH---HhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCC----c
Confidence 998643211110 013666664 45878888777655444444444 22 1333334445554322 2
Q ss_pred CCCC--HHHHHHHHcCCCeEEEEEEe
Q 025492 224 SSAT--EEGQKVARNGGQTFQAVFRR 247 (252)
Q Consensus 224 ~~~t--~~e~~~~~~G~~i~~~~~~k 247 (252)
...| .||......|-.|-.-++..
T Consensus 144 h~~Ti~DFe~lc~~~~i~I~~~~~~~ 169 (193)
T PF07021_consen 144 HLCTIKDFEDLCRELGIRIEERVFLD 169 (193)
T ss_pred ccccHHHHHHHHHHCCCEEEEEEEEc
Confidence 3445 89999999999987776653
No 104
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.30 E-value=1.9e-11 Score=102.60 Aligned_cols=99 Identities=19% Similarity=0.262 Sum_probs=77.6
Q ss_pred CceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 66 KIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
...|||||||+|.++..||... +...+++||+++..++.|++++... +..||.++.+|...-++ ..+.+|
T Consensus 73 g~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~------~~~nv~~~~gdg~~g~~---~~apfD 143 (209)
T PF01135_consen 73 GDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARL------GIDNVEVVVGDGSEGWP---EEAPFD 143 (209)
T ss_dssp T-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHH------TTHSEEEEES-GGGTTG---GG-SEE
T ss_pred CCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHh------ccCceeEEEcchhhccc---cCCCcC
Confidence 5699999999999999999984 4557999999999999999999876 78899999999864332 356899
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
.|++...-+- .-..+...|++||++++--
T Consensus 144 ~I~v~~a~~~--------------ip~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 144 RIIVTAAVPE--------------IPEALLEQLKPGGRLVAPI 172 (209)
T ss_dssp EEEESSBBSS----------------HHHHHTEEEEEEEEEEE
T ss_pred EEEEeeccch--------------HHHHHHHhcCCCcEEEEEE
Confidence 9999865432 4456777899999999854
No 105
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.30 E-value=6.2e-11 Score=110.38 Aligned_cols=113 Identities=17% Similarity=0.189 Sum_probs=85.6
Q ss_pred CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
+..|||+|||+|..+..+++... ...++|+|+++.+++.+++++... ++.||.++.+|+.. + .+++++|
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~------g~~~v~~~~~Da~~-~---~~~~~fD 320 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL------GITIIETIEGDARS-F---SPEEQPD 320 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh------CCCeEEEEeCcccc-c---ccCCCCC
Confidence 45899999999999999998743 568999999999999999888664 77899999999864 2 2456899
Q ss_pred EEEEeCCCCccc--ccc--ccccc----------cCHHHHHHHHHhhcCCcEEEEEeC
Q 025492 145 KMFFLFPDPHFK--EKN--HRRRV----------ISPHLLDEYAYVLGVGGIIYTITD 188 (252)
Q Consensus 145 ~i~~~fpdP~~k--~~h--~krr~----------~~~~~l~~~~~~LkpgG~l~~~td 188 (252)
.|++..|.--.. .++ .+.+. .+..+|..+.+.|||||++++.|-
T Consensus 321 ~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc 378 (445)
T PRK14904 321 AILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC 378 (445)
T ss_pred EEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 999875531100 001 01111 245689999999999999999883
No 106
>PRK03612 spermidine synthase; Provisional
Probab=99.29 E-value=3e-11 Score=114.46 Aligned_cols=132 Identities=15% Similarity=0.172 Sum_probs=97.2
Q ss_pred CceEEEEcCcccHHHHHHHHHCCC-CeEEEEecCHhHHHHHHHH--HHHHhhcCCCCcccEEEEeCCcccccCccCCCCc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPE-VLMIGMELRDKVTEYVKER--ILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQ 142 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~-~~~iGiDis~~~i~~a~~~--~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s 142 (252)
...|||||||+|..+..+++. |. .++++||+++++++.|+++ +..... .....++++++.+|+.+.+.. .++.
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~-~~~~dprv~vi~~Da~~~l~~--~~~~ 373 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNG-GALDDPRVTVVNDDAFNWLRK--LAEK 373 (521)
T ss_pred CCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhc-cccCCCceEEEEChHHHHHHh--CCCC
Confidence 348999999999999999875 54 7999999999999999873 222100 011236899999999875543 2568
Q ss_pred ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc----hHHHHHHHHHHhcCC
Q 025492 143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV----EELGDWMRSCLENHP 204 (252)
Q Consensus 143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~----~~~~~~~~~~~~~~~ 204 (252)
+|.|++++|+|+.. ...++.+.+|++.+.+.|+|||.+++.+.. .+.+..+.+.+.+.+
T Consensus 374 fDvIi~D~~~~~~~---~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~g 436 (521)
T PRK03612 374 FDVIIVDLPDPSNP---ALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAG 436 (521)
T ss_pred CCEEEEeCCCCCCc---chhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcC
Confidence 99999999998732 123456778999999999999999997643 344455566666553
No 107
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=3.1e-11 Score=100.20 Aligned_cols=97 Identities=19% Similarity=0.249 Sum_probs=79.7
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...|||||||+|..+.-||+.- ..|+.||+.+...+.|++++..+ ++.||.++++|...-+ -..+.+|.
T Consensus 73 g~~VLEIGtGsGY~aAvla~l~--~~V~siEr~~~L~~~A~~~L~~l------g~~nV~v~~gDG~~G~---~~~aPyD~ 141 (209)
T COG2518 73 GDRVLEIGTGSGYQAAVLARLV--GRVVSIERIEELAEQARRNLETL------GYENVTVRHGDGSKGW---PEEAPYDR 141 (209)
T ss_pred CCeEEEECCCchHHHHHHHHHh--CeEEEEEEcHHHHHHHHHHHHHc------CCCceEEEECCcccCC---CCCCCcCE
Confidence 5689999999999999999994 38999999999999999998776 8999999999986432 23578999
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
|++.-.-|- .-+.+...||+||++++-.
T Consensus 142 I~Vtaaa~~--------------vP~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 142 IIVTAAAPE--------------VPEALLDQLKPGGRLVIPV 169 (209)
T ss_pred EEEeeccCC--------------CCHHHHHhcccCCEEEEEE
Confidence 998754332 2235666899999999865
No 108
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.29 E-value=3.2e-11 Score=110.17 Aligned_cols=101 Identities=19% Similarity=0.314 Sum_probs=75.9
Q ss_pred CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
+...|||||||+|.++..+|+.. ++.++|+|+|+.+++.|++++. +. ++.+..+|+.. + ++++|
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~--------~l-~v~~~~~D~~~-l-----~~~fD 230 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCA--------GL-PVEIRLQDYRD-L-----NGQFD 230 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhc--------cC-eEEEEECchhh-c-----CCCCC
Confidence 35689999999999999999876 6789999999999999987652 22 48888888753 2 46899
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
.|+....-.+.... -...+++++.++|||||.+++.+
T Consensus 231 ~Ivs~~~~ehvg~~------~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 231 RIVSVGMFEHVGPK------NYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred EEEEeCchhhCChH------HHHHHHHHHHHHcCCCcEEEEEE
Confidence 99764321111000 01369999999999999999865
No 109
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.29 E-value=3.5e-11 Score=87.11 Aligned_cols=103 Identities=19% Similarity=0.319 Sum_probs=79.3
Q ss_pred eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEE
Q 025492 68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMF 147 (252)
Q Consensus 68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~ 147 (252)
.+||+|||.|.++..++. .+...++|+|+++.++..+++... .....++.++..|+..... .....+|.|+
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~--~~~~~~d~i~ 71 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAA------ALLADNVEVLKGDAEELPP--EADESFDVII 71 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHh------cccccceEEEEcChhhhcc--ccCCceEEEE
Confidence 389999999999999998 567899999999999887764221 1355789999999875332 3457899999
Q ss_pred EeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 148 FLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 148 ~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
++.+..+. ......+++.+.+.|+|||.+++.
T Consensus 72 ~~~~~~~~-------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 72 SDPPLHHL-------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred Eccceeeh-------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 98776542 012346999999999999999875
No 110
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.29 E-value=3.6e-11 Score=106.61 Aligned_cols=103 Identities=15% Similarity=0.210 Sum_probs=77.5
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCccc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
...|||||||+|.+++.+++++|+.+++++|+ +.+++.|++++... ++ +++.++.+|+.+ . .++. .|
T Consensus 150 ~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~------gl~~rv~~~~~d~~~-~--~~~~--~D 217 (306)
T TIGR02716 150 VKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEK------GVADRMRGIAVDIYK-E--SYPE--AD 217 (306)
T ss_pred CCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhC------CccceEEEEecCccC-C--CCCC--CC
Confidence 45899999999999999999999999999997 78999888877553 44 479999999753 1 2333 48
Q ss_pred EEEEeCCC-CccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 145 KMFFLFPD-PHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 145 ~i~~~fpd-P~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
.|++..-- -|... ....++++++++|+|||+|++..
T Consensus 218 ~v~~~~~lh~~~~~-------~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 218 AVLFCRILYSANEQ-------LSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred EEEeEhhhhcCChH-------HHHHHHHHHHHhcCCCCEEEEEE
Confidence 77654311 12110 11258999999999999998863
No 111
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.29 E-value=4.6e-11 Score=111.20 Aligned_cols=116 Identities=18% Similarity=0.271 Sum_probs=90.5
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCc-cCCCCccc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPN-YFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~-~~~~~s~d 144 (252)
...|||+|||+|.+++.+|+.. ..++|+|+|+.|++.|++++... +++|+.++.+|+.+.+.. .+.++++|
T Consensus 298 ~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~------~~~~v~~~~~d~~~~l~~~~~~~~~fD 369 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRN------GLDNVTFYHANLEEDFTDQPWALGGFD 369 (443)
T ss_pred CCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHc------CCCceEEEEeChHHhhhhhhhhcCCCC
Confidence 4589999999999999999984 68999999999999999887653 677999999999754432 13356799
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHh
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLE 201 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~ 201 (252)
.|+++.|-- . ....++.+.+ |+|++.+|+++|...++..+.....
T Consensus 370 ~Vi~dPPr~--g---------~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~~ 414 (443)
T PRK13168 370 KVLLDPPRA--G---------AAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLVE 414 (443)
T ss_pred EEEECcCCc--C---------hHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHhh
Confidence 999865421 1 1246666655 6999999999999888888776554
No 112
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.28 E-value=2.3e-12 Score=108.06 Aligned_cols=150 Identities=15% Similarity=0.265 Sum_probs=101.6
Q ss_pred cccCCCCCCCCCCCCCCCCCCCC----Cc-cccCCCCCCCCCccCCCCCc--eEEEEcCcccHHHHHHHHHCCC--CeEE
Q 025492 23 RARAHSNPLSDSHFPVPISPSHV----DY-SLHYPHFFPPADQVNCSKKI--QFADIGCGFGGLLISLSTLFPE--VLMI 93 (252)
Q Consensus 23 ~~r~~~np~~~~~~~~~~~~~~~----~w-~~~f~~~~~~~~~~~~~~~~--~vLDIGcG~G~~~~~lA~~~p~--~~~i 93 (252)
..+.+.+|-+.|...|-.+.+.+ +| ...|+...+.. ..+ .|||||||.|.....+.+.+|+ ..++
T Consensus 28 ~~~y~~~~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~------~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~ 101 (264)
T KOG2361|consen 28 VVKYEREASKYWDTFYKIHENRFFKDRNWLLREFPELLPVD------EKSAETILEVGCGVGNTVFPLLKTSPNNRLKVY 101 (264)
T ss_pred hhhhhcchhhhhhhhhhhccccccchhHHHHHhhHHhhCcc------ccChhhheeeccCCCcccchhhhcCCCCCeEEE
Confidence 34566666666655565544433 45 44555553332 222 7999999999999999999887 8899
Q ss_pred EEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCccc-ccCccCCCCcccEEEEeC------CCCccccccccccccC
Q 025492 94 GMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMK-YIPNYFEKGQLTKMFFLF------PDPHFKEKNHRRRVIS 166 (252)
Q Consensus 94 GiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~-~l~~~~~~~s~d~i~~~f------pdP~~k~~h~krr~~~ 166 (252)
++|.|+.+++..+++..- ...++.....|+.. .+...+..+++|.|.+.| |+-|.
T Consensus 102 acDfsp~Ai~~vk~~~~~-------~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~----------- 163 (264)
T KOG2361|consen 102 ACDFSPRAIELVKKSSGY-------DESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQ----------- 163 (264)
T ss_pred EcCCChHHHHHHHhcccc-------chhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHH-----------
Confidence 999999999887765321 22445444455431 234456689999988765 44332
Q ss_pred HHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHh
Q 025492 167 PHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLE 201 (252)
Q Consensus 167 ~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~ 201 (252)
..+..+.++|||||.|++. +|...-++++.
T Consensus 164 -~a~~nl~~llKPGG~llfr----DYg~~DlaqlR 193 (264)
T KOG2361|consen 164 -SVIKNLRTLLKPGGSLLFR----DYGRYDLAQLR 193 (264)
T ss_pred -HHHHHHHHHhCCCcEEEEe----ecccchHHHHh
Confidence 5999999999999999995 35555555554
No 113
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.28 E-value=4.5e-11 Score=100.12 Aligned_cols=96 Identities=18% Similarity=0.201 Sum_probs=70.3
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM 146 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i 146 (252)
..|||||||+|.++..+++..|+..++|||+|+.|++.|+++ .+++.++++|+.+ .++++++|.|
T Consensus 45 ~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~-----------~~~~~~~~~d~~~----~~~~~sfD~V 109 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAY-----------LPNINIIQGSLFD----PFKDNFFDLV 109 (204)
T ss_pred CcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhh-----------CCCCcEEEeeccC----CCCCCCEEEE
Confidence 479999999999999999988889999999999999988653 2457788888753 3678899999
Q ss_pred EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025492 147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT 185 (252)
Q Consensus 147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~ 185 (252)
+++..--+.. .-....+++++.+++ ++.+++
T Consensus 110 ~~~~vL~hl~------p~~~~~~l~el~r~~--~~~v~i 140 (204)
T TIGR03587 110 LTKGVLIHIN------PDNLPTAYRELYRCS--NRYILI 140 (204)
T ss_pred EECChhhhCC------HHHHHHHHHHHHhhc--CcEEEE
Confidence 9754321110 001125777888876 455555
No 114
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.28 E-value=2e-11 Score=100.84 Aligned_cols=118 Identities=15% Similarity=0.025 Sum_probs=78.8
Q ss_pred CceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccc-----cCccCC
Q 025492 66 KIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKY-----IPNYFE 139 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~-----l~~~~~ 139 (252)
...|||||||+|.++..++... +...++|+|+++.+ ..+++.++++|+.+. +...++
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------------~~~~i~~~~~d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------------PIENVDFIRGDFTDEEVLNKIRERVG 95 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------------cCCCceEEEeeCCChhHHHHHHHHhC
Confidence 4589999999999999999886 56789999999853 124688888887531 011245
Q ss_pred CCcccEEEEeCCCC----ccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHh
Q 025492 140 KGQLTKMFFLFPDP----HFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLE 201 (252)
Q Consensus 140 ~~s~d~i~~~fpdP----~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~ 201 (252)
.+.+|.|+++.+.+ |. ..|.........++..+.++|+|||++++.....+-...+.+.+.
T Consensus 96 ~~~~D~V~~~~~~~~~g~~~-~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~ 160 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGYWD-IDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELR 160 (188)
T ss_pred CCCccEEEcCCCCCCCCCcc-ccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHH
Confidence 66899999876422 11 111111011246899999999999999997654333334444443
No 115
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.28 E-value=7.2e-11 Score=108.09 Aligned_cols=115 Identities=12% Similarity=0.118 Sum_probs=83.0
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc--ccEEEEeCCcccccCccC-CCCc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY--QNISVVRTNSMKYIPNYF-EKGQ 142 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~--~nv~~~~~da~~~l~~~~-~~~s 142 (252)
...|||+|||+|.+++.++.. ....+++||+|+.+++.|++++... ++ .++.++++|+.+.+.... ....
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~N------gl~~~~v~~i~~D~~~~l~~~~~~~~~ 293 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELN------KLDLSKAEFVRDDVFKLLRTYRDRGEK 293 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHc------CCCCCcEEEEEccHHHHHHHHHhcCCC
Confidence 458999999999999877654 3458999999999999999988664 55 479999999986554321 2458
Q ss_pred ccEEEEeCCCCccccccccccc--cCHHHHHHHHHhhcCCcEEEEEeC
Q 025492 143 LTKMFFLFPDPHFKEKNHRRRV--ISPHLLDEYAYVLGVGGIIYTITD 188 (252)
Q Consensus 143 ~d~i~~~fpdP~~k~~h~krr~--~~~~~l~~~~~~LkpgG~l~~~td 188 (252)
+|.|+++.|-- .+.+...... -...++....++|+|||.|++.|-
T Consensus 294 fDlVilDPP~f-~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 294 FDVIVMDPPKF-VENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred CCEEEECCCCC-CCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 99999987631 1111100000 124566778899999999998764
No 116
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.28 E-value=1.6e-11 Score=100.77 Aligned_cols=113 Identities=18% Similarity=0.264 Sum_probs=84.7
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEE-EEeCCcccccCccCCCCcccE
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNIS-VVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~-~~~~da~~~l~~~~~~~s~d~ 145 (252)
.-|||||||+|.-.-.+-- -|...++++|.++.|-+.|.+.+.+. ...++. |+.++.. .+++ ++++|+|.
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~-~p~~svt~lDpn~~mee~~~ks~~E~------k~~~~~~fvva~ge-~l~~-l~d~s~Dt 148 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPW-KPINSVTCLDPNEKMEEIADKSAAEK------KPLQVERFVVADGE-NLPQ-LADGSYDT 148 (252)
T ss_pred cceEEecccCCCCcccccC-CCCceEEEeCCcHHHHHHHHHHHhhc------cCcceEEEEeechh-cCcc-cccCCeee
Confidence 4689999999976544432 37889999999999999998877653 455666 9999986 5764 68999999
Q ss_pred EEEeC-----CCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCch---HHHHHHHHHHh
Q 025492 146 MFFLF-----PDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE---ELGDWMRSCLE 201 (252)
Q Consensus 146 i~~~f-----pdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~---~~~~~~~~~~~ 201 (252)
|+..| -||- ..|+++.++|+|||+++|.-... .....+.++..
T Consensus 149 VV~TlvLCSve~~~-------------k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ 199 (252)
T KOG4300|consen 149 VVCTLVLCSVEDPV-------------KQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVA 199 (252)
T ss_pred EEEEEEEeccCCHH-------------HHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHh
Confidence 98544 2333 59999999999999999976543 33444555443
No 117
>PTZ00146 fibrillarin; Provisional
Probab=99.27 E-value=5.3e-11 Score=103.93 Aligned_cols=104 Identities=14% Similarity=0.124 Sum_probs=76.7
Q ss_pred CCceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025492 65 KKIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL 143 (252)
Q Consensus 65 ~~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~ 143 (252)
+...|||+|||+|.++..+|... +...|++||+++.+.+.....+. ..+||.++..|+.......+...++
T Consensus 132 pG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak--------~r~NI~~I~~Da~~p~~y~~~~~~v 203 (293)
T PTZ00146 132 PGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK--------KRPNIVPIIEDARYPQKYRMLVPMV 203 (293)
T ss_pred CCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh--------hcCCCEEEECCccChhhhhcccCCC
Confidence 35689999999999999999995 45689999999876644333221 2368999999986321111224589
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
|.|++....|+.. ..++.++.++|||||.|+|.
T Consensus 204 DvV~~Dva~pdq~----------~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 204 DVIFADVAQPDQA----------RIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CEEEEeCCCcchH----------HHHHHHHHHhccCCCEEEEE
Confidence 9999988777632 13667899999999999995
No 118
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.27 E-value=6.9e-11 Score=99.31 Aligned_cols=102 Identities=16% Similarity=0.285 Sum_probs=86.4
Q ss_pred CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc-EEEEe-CCcccccCccCCCCc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQN-ISVVR-TNSMKYIPNYFEKGQ 142 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~~~-~da~~~l~~~~~~~s 142 (252)
...|||||++.|..++.||...| +..++.||+++++.+.|++++++. +..+ |.++. +|+.+.+.. +..++
T Consensus 60 ~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~a------g~~~~i~~~~~gdal~~l~~-~~~~~ 132 (219)
T COG4122 60 PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEA------GVDDRIELLLGGDALDVLSR-LLDGS 132 (219)
T ss_pred CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHc------CCcceEEEEecCcHHHHHHh-ccCCC
Confidence 45899999999999999999988 889999999999999999999775 6655 88888 699877765 55799
Q ss_pred ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025492 143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT 185 (252)
Q Consensus 143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~ 185 (252)
||.||+.---+ -++.+++.+.++|+|||.+++
T Consensus 133 fDliFIDadK~-----------~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 133 FDLVFIDADKA-----------DYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred ccEEEEeCChh-----------hCHHHHHHHHHHhCCCcEEEE
Confidence 99999864211 245799999999999999987
No 119
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.26 E-value=3.4e-11 Score=112.96 Aligned_cols=104 Identities=17% Similarity=0.242 Sum_probs=78.8
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...|||||||+|.++..+++.. ..++|||+++.|++.+.... ...+|+.++++|+.. ....++++++|.
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~--------~~~~~i~~~~~d~~~-~~~~~~~~~fD~ 106 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESIN--------GHYKNVKFMCADVTS-PDLNISDGSVDL 106 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHh--------ccCCceEEEEecccc-cccCCCCCCEEE
Confidence 4589999999999999999984 57999999999997664321 235689999999853 222366789999
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
|+++++-.+.... ....+++++.++|||||.+++.
T Consensus 107 I~~~~~l~~l~~~------~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 107 IFSNWLLMYLSDK------EVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred EehhhhHHhCCHH------HHHHHHHHHHHhcCCCeEEEEE
Confidence 9987754332110 0136999999999999999885
No 120
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.25 E-value=4.3e-11 Score=101.22 Aligned_cols=107 Identities=13% Similarity=0.120 Sum_probs=72.3
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhc------CCCCcccEEEEeCCcccccCccCC
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVS------NPGQYQNISVVRTNSMKYIPNYFE 139 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~------~~~~~~nv~~~~~da~~~l~~~~~ 139 (252)
+..|||+|||.|..++.||++ +..|+|||+|+.+++.+.......... ......+|.+.++|+.+ +.. -.
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~-l~~-~~ 113 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFA-LTA-AD 113 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccC-CCc-cc
Confidence 458999999999999999997 889999999999998764211000000 00123578999999874 321 11
Q ss_pred CCcccEEE-----EeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 140 KGQLTKMF-----FLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 140 ~~s~d~i~-----~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
.+.+|.|+ +.+| |. ....+++.+.++|+|||++++.+
T Consensus 114 ~~~fd~v~D~~~~~~l~-~~----------~R~~~~~~l~~lL~pgG~~~l~~ 155 (218)
T PRK13255 114 LADVDAVYDRAALIALP-EE----------MRERYVQQLAALLPAGCRGLLVT 155 (218)
T ss_pred CCCeeEEEehHhHhhCC-HH----------HHHHHHHHHHHHcCCCCeEEEEE
Confidence 24677776 2332 21 12369999999999999866644
No 121
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.25 E-value=1e-10 Score=108.38 Aligned_cols=115 Identities=15% Similarity=0.214 Sum_probs=83.1
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccCCCCccc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~~~~s~d 144 (252)
+..|||+|||+|..+..+|+..+...++|+|+++.+++.+++++... ++. ++.++.+|+.. +....+.+++|
T Consensus 239 g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~------g~~~~v~~~~~d~~~-~~~~~~~~~fD 311 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRL------GLTIKAETKDGDGRG-PSQWAENEQFD 311 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHc------CCCeEEEEecccccc-ccccccccccC
Confidence 56899999999999999999887779999999999999999888654 444 34446677642 22223467899
Q ss_pred EEEEeCCCCccc--ccc--cccc----------ccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 145 KMFFLFPDPHFK--EKN--HRRR----------VISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 145 ~i~~~fpdP~~k--~~h--~krr----------~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
.|++.-|.--.. .++ .+.+ -.+..+|..+.++|||||.++++|
T Consensus 312 ~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst 368 (426)
T TIGR00563 312 RILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT 368 (426)
T ss_pred EEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 999865422110 000 0111 124679999999999999999875
No 122
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.25 E-value=1.6e-10 Score=98.31 Aligned_cols=106 Identities=19% Similarity=0.250 Sum_probs=78.8
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...|||||||+|.++..+++. ...++|+|+++.+++.|++++... +. ++.++.+|+..... ...+.+|.
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~------~~-~~~~~~~~~~~~~~--~~~~~fD~ 117 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALES------GL-KIDYRQTTAEELAA--EHPGQFDV 117 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHc------CC-ceEEEecCHHHhhh--hcCCCccE
Confidence 447999999999999999886 568999999999999888776432 33 57888888764321 23578999
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCch
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE 190 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~ 190 (252)
|++...-.+... ...+++.+.++|+|||.+++.+...
T Consensus 118 Ii~~~~l~~~~~--------~~~~l~~~~~~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 118 VTCMEMLEHVPD--------PASFVRACAKLVKPGGLVFFSTLNR 154 (233)
T ss_pred EEEhhHhhccCC--------HHHHHHHHHHHcCCCcEEEEEecCC
Confidence 987543222111 1258999999999999999876543
No 123
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.25 E-value=9e-11 Score=96.90 Aligned_cols=103 Identities=14% Similarity=0.179 Sum_probs=73.5
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...+||||||.|..++.||++ +..|+++|+|+.+++.+++.+.. .+++ |+....|+.+ .. + +..+|.
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~------~~l~-i~~~~~Dl~~-~~--~-~~~yD~ 97 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEE------EGLD-IRTRVADLND-FD--F-PEEYDF 97 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHH------TT-T-EEEEE-BGCC-BS----TTTEEE
T ss_pred CCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhh------cCce-eEEEEecchh-cc--c-cCCcCE
Confidence 348999999999999999999 88999999999999988765543 2555 8899999753 22 3 468999
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
|+....-... .|-..+.+++.+...++|||.+++.+
T Consensus 98 I~st~v~~fL------~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 98 IVSTVVFMFL------QRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp EEEESSGGGS-------GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEEEeccC------CHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 8753211111 11123569999999999999988854
No 124
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.25 E-value=1.2e-10 Score=101.43 Aligned_cols=163 Identities=17% Similarity=0.148 Sum_probs=102.1
Q ss_pred CCccccCCCCCCCCCccCCCCCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc-E
Q 025492 45 VDYSLHYPHFFPPADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQN-I 123 (252)
Q Consensus 45 ~~w~~~f~~~~~~~~~~~~~~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n-v 123 (252)
++|+.+-+...+. .+..|||||||+|.++..|+.+.+. .|+|||.+......... ++.. .+.++ +
T Consensus 102 ~KW~rl~p~l~~L-------~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~-i~~~-----lg~~~~~ 167 (315)
T PF08003_consen 102 WKWDRLLPHLPDL-------KGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEA-IKHF-----LGQDPPV 167 (315)
T ss_pred chHHHHHhhhCCc-------CCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHH-HHHH-----hCCCccE
Confidence 4777777665322 2669999999999999999999754 69999999875433221 1111 12222 3
Q ss_pred EEEeCCcccccCccCCCCcccEEEEe-----CCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHH
Q 025492 124 SVVRTNSMKYIPNYFEKGQLTKMFFL-----FPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRS 198 (252)
Q Consensus 124 ~~~~~da~~~l~~~~~~~s~d~i~~~-----fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~ 198 (252)
.++...+ +.++. .+.||.|+.. -.+|. ..|.++...|++||.+++.|-.
T Consensus 168 ~~lplgv-E~Lp~---~~~FDtVF~MGVLYHrr~Pl-------------~~L~~Lk~~L~~gGeLvLETlv--------- 221 (315)
T PF08003_consen 168 FELPLGV-EDLPN---LGAFDTVFSMGVLYHRRSPL-------------DHLKQLKDSLRPGGELVLETLV--------- 221 (315)
T ss_pred EEcCcch-hhccc---cCCcCEEEEeeehhccCCHH-------------HHHHHHHHhhCCCCEEEEEEee---------
Confidence 3433333 34553 5789999853 24544 5999999999999999998832
Q ss_pred HHhcCCCcccccccccccCccccCCCCCCHHHHHHHHcCCCeEEEEEEec
Q 025492 199 CLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRRI 248 (252)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~t~~e~~~~~~G~~i~~~~~~k~ 248 (252)
+.......-++.+.++..+.-..+.+......+..+.|+.-.+++-...
T Consensus 222 -i~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~~~ 270 (315)
T PF08003_consen 222 -IDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDVSP 270 (315)
T ss_pred -ecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEecCcc
Confidence 1111112223333354443322233444677777888888777776554
No 125
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.24 E-value=1.3e-10 Score=107.85 Aligned_cols=116 Identities=14% Similarity=0.160 Sum_probs=88.9
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCcc-CCCCccc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNY-FEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~-~~~~s~d 144 (252)
...|||+|||+|.+++.+|+.. ..++|+|+++.+++.|++++... ++.|+.|+.+|+.+.++.. +..+++|
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~------~~~nv~~~~~d~~~~l~~~~~~~~~~D 364 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELN------GIANVEFLAGTLETVLPKQPWAGQIPD 364 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHh------CCCceEEEeCCHHHHHHHHHhcCCCCC
Confidence 4589999999999999999884 57999999999999999987654 6789999999997644332 2345789
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHH
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCL 200 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~ 200 (252)
.|+++.|-. =....+++.+.+ |+|++.+|+.++...++..+....
T Consensus 365 ~vi~dPPr~----------G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~ 409 (431)
T TIGR00479 365 VLLLDPPRK----------GCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLC 409 (431)
T ss_pred EEEECcCCC----------CCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHH
Confidence 999865521 013467777664 899999999988776666555443
No 126
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.24 E-value=9.9e-11 Score=104.35 Aligned_cols=113 Identities=16% Similarity=0.236 Sum_probs=85.9
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...|||+|||+|.+++.+|.. ...++|+|+++.+++.|++++... +++|+.|+++|+.+.... ..+.+|.
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~------~l~~v~~~~~D~~~~~~~--~~~~~D~ 243 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAEL------GLTNVQFQALDSTQFATA--QGEVPDL 243 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHc------CCCceEEEEcCHHHHHHh--cCCCCeE
Confidence 358999999999999999996 578999999999999999887654 678999999999754321 2357899
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHH
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSC 199 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~ 199 (252)
|+++.|- .. ....+++.+ ..+.|++.+|+.++...++..+...
T Consensus 244 Vv~dPPr----~G------~~~~~~~~l-~~~~~~~ivyvsc~p~t~~rd~~~l 286 (315)
T PRK03522 244 VLVNPPR----RG------IGKELCDYL-SQMAPRFILYSSCNAQTMAKDLAHL 286 (315)
T ss_pred EEECCCC----CC------ccHHHHHHH-HHcCCCeEEEEECCcccchhHHhhc
Confidence 9998541 11 122344444 4478999999999988877766543
No 127
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.24 E-value=2.5e-11 Score=96.59 Aligned_cols=136 Identities=17% Similarity=0.217 Sum_probs=86.8
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...|||||||.|.++..+++. +..++|+|+++.+++. .++.....+... . ..+++++|.
T Consensus 23 ~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~----------------~~~~~~~~~~~~-~--~~~~~~fD~ 81 (161)
T PF13489_consen 23 GKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK----------------RNVVFDNFDAQD-P--PFPDGSFDL 81 (161)
T ss_dssp TSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH----------------TTSEEEEEECHT-H--HCHSSSEEE
T ss_pred CCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh----------------hhhhhhhhhhhh-h--hccccchhh
Confidence 569999999999999999777 4489999999998765 122233322221 1 245789999
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcccccccccccCccccCCCC
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSS 225 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 225 (252)
|+++..--|... -..+|+.+.++|||||.+++.+...... ....+.... +..... .+. ....
T Consensus 82 i~~~~~l~~~~d--------~~~~l~~l~~~LkpgG~l~~~~~~~~~~--~~~~~~~~~-~~~~~~-~~~------~~~~ 143 (161)
T PF13489_consen 82 IICNDVLEHLPD--------PEEFLKELSRLLKPGGYLVISDPNRDDP--SPRSFLKWR-YDRPYG-GHV------HFFS 143 (161)
T ss_dssp EEEESSGGGSSH--------HHHHHHHHHHCEEEEEEEEEEEEBTTSH--HHHHHHHCC-GTCHHT-TTT------EEBB
T ss_pred HhhHHHHhhccc--------HHHHHHHHHHhcCCCCEEEEEEcCCcch--hhhHHHhcC-CcCccC-cee------ccCC
Confidence 998754333321 1269999999999999999998764321 111222211 111100 011 1145
Q ss_pred CCHHHHHHHHcCCCe
Q 025492 226 ATEEGQKVARNGGQT 240 (252)
Q Consensus 226 ~t~~e~~~~~~G~~i 240 (252)
...+.....+.|.+|
T Consensus 144 ~~~~~~ll~~~G~~i 158 (161)
T PF13489_consen 144 PDELRQLLEQAGFEI 158 (161)
T ss_dssp HHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHCCCEE
Confidence 567888888888765
No 128
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.24 E-value=1.2e-10 Score=97.17 Aligned_cols=106 Identities=18% Similarity=0.203 Sum_probs=78.6
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
+..|||+|||+|.+++.++.+. ...+++||+++.+++.|++++... ++.|+.++++|+.+.+.. ....+|.
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~------~~~~v~~~~~D~~~~l~~--~~~~fDl 124 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATL------KAGNARVVNTNALSFLAQ--PGTPHNV 124 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHh------CCCcEEEEEchHHHHHhh--cCCCceE
Confidence 4589999999999999765554 358999999999999999888664 567899999998765532 2346999
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHh--hcCCcEEEEEeCc
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYV--LGVGGIIYTITDV 189 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~--LkpgG~l~~~td~ 189 (252)
|+++.|- .+ . .....++.+... |+|+|.+++.+..
T Consensus 125 V~~DPPy--~~-g------~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 125 VFVDPPF--RK-G------LLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred EEECCCC--CC-C------hHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 9988762 11 1 123456666553 7899999987643
No 129
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.24 E-value=1.9e-11 Score=101.29 Aligned_cols=106 Identities=19% Similarity=0.196 Sum_probs=79.2
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...|||||||+|..+..|... +..++|+|||+.|++.|.+ .+. . -.++.+|.-+-++ |.+++||.
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~--~e~--------e-gdlil~DMG~Glp--frpGtFDg 115 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVE--REL--------E-GDLILCDMGEGLP--FRPGTFDG 115 (270)
T ss_pred CcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHH--hhh--------h-cCeeeeecCCCCC--CCCCccce
Confidence 458999999999999988877 5789999999999999876 222 1 3467788766565 88999999
Q ss_pred EEEeCCCCc----ccccc-ccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025492 146 MFFLFPDPH----FKEKN-HRRRVISPHLLDEYAYVLGVGGIIYTITD 188 (252)
Q Consensus 146 i~~~fpdP~----~k~~h-~krr~~~~~~l~~~~~~LkpgG~l~~~td 188 (252)
++..-.-.| .+..| .++|+. .|+..++.+|++|++.+++.-
T Consensus 116 ~ISISAvQWLcnA~~s~~~P~~Rl~--~FF~tLy~~l~rg~raV~QfY 161 (270)
T KOG1541|consen 116 VISISAVQWLCNADKSLHVPKKRLL--RFFGTLYSCLKRGARAVLQFY 161 (270)
T ss_pred EEEeeeeeeecccCccccChHHHHH--HHhhhhhhhhccCceeEEEec
Confidence 875332222 22222 344443 489999999999999999864
No 130
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.22 E-value=5.8e-11 Score=103.29 Aligned_cols=112 Identities=20% Similarity=0.288 Sum_probs=75.0
Q ss_pred ceEEEEcCcccH----HHHHHHHHCC-----CCeEEEEecCHhHHHHHHHHHHH---Hhhc----------CCC------
Q 025492 67 IQFADIGCGFGG----LLISLSTLFP-----EVLMIGMELRDKVTEYVKERILA---LRVS----------NPG------ 118 (252)
Q Consensus 67 ~~vLDIGcG~G~----~~~~lA~~~p-----~~~~iGiDis~~~i~~a~~~~~~---~~~~----------~~~------ 118 (252)
-.|+|+|||+|. +++.+++..+ +..++|+|+|+.|++.|++.+-. .+.. ...
T Consensus 101 ~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~ 180 (264)
T smart00138 101 VRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVK 180 (264)
T ss_pred EEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEC
Confidence 489999999997 4555666544 46899999999999999875311 0000 000
Q ss_pred --CcccEEEEeCCcccccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 119 --QYQNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 119 --~~~nv~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
--.+|.|.+.|+.+ .+ ++.+.+|.|++...--++.. .....++++++++|+|||.+++..
T Consensus 181 ~~ir~~V~F~~~dl~~-~~--~~~~~fD~I~crnvl~yf~~------~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 181 PELKERVRFAKHNLLA-ES--PPLGDFDLIFCRNVLIYFDE------PTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred hHHhCcCEEeeccCCC-CC--CccCCCCEEEechhHHhCCH------HHHHHHHHHHHHHhCCCeEEEEEC
Confidence 01378999999864 22 45788999987322111100 012359999999999999999854
No 131
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.20 E-value=1.1e-10 Score=114.31 Aligned_cols=134 Identities=10% Similarity=0.111 Sum_probs=93.7
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc--ccEEEEeCCcccccCccCCCCcc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY--QNISVVRTNSMKYIPNYFEKGQL 143 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~--~nv~~~~~da~~~l~~~~~~~s~ 143 (252)
+..|||+|||+|.+++.+|... ...+++||+|+.+++.|++++... ++ .+++++++|+.+.+.. + ...+
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~n------g~~~~~v~~i~~D~~~~l~~-~-~~~f 609 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALN------GLSGRQHRLIQADCLAWLKE-A-REQF 609 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHh------CCCccceEEEEccHHHHHHH-c-CCCc
Confidence 4589999999999999999863 346999999999999999988654 44 3799999998765532 2 4689
Q ss_pred cEEEEeCCCCcccccc-c--cccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCC-cccc
Q 025492 144 TKMFFLFPDPHFKEKN-H--RRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPM-FEAL 209 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h-~--krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~-~~~~ 209 (252)
|.|+++.|---..+.. . .-.-....++..+.++|+|||.+++.+....+.. ..+.+...++ +..+
T Consensus 610 DlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~-~~~~~~~~g~~~~~i 678 (702)
T PRK11783 610 DLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKM-DEEGLAKLGLKAEEI 678 (702)
T ss_pred CEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCh-hHHHHHhCCCeEEEE
Confidence 9999986532111000 0 0000134688889999999999999887654433 2445554443 4333
No 132
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.20 E-value=3.5e-10 Score=95.51 Aligned_cols=149 Identities=13% Similarity=0.151 Sum_probs=93.3
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCccc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
...|||||||+|.++..++.. +..++|+|+++.|++.|++++... +. .++.+..+|+.. ++ +++|
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~------~~~~~i~~~~~d~~~-~~-----~~fD 121 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGR------DVAGNVEFEVNDLLS-LC-----GEFD 121 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhc------CCCCceEEEECChhh-CC-----CCcC
Confidence 458999999999999999987 558999999999999998876542 33 479999999863 32 6899
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcccccccccccCccccCCC
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLS 224 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 224 (252)
.|+....--+.... ....+++++.+++++++.+.+. +..... .....+... +..... .+. ....
T Consensus 122 ~ii~~~~l~~~~~~------~~~~~l~~i~~~~~~~~~i~~~-~~~~~~-~~~~~~~~~--~~~~~~-----~~~-~~~~ 185 (219)
T TIGR02021 122 IVVCMDVLIHYPAS------DMAKALGHLASLTKERVIFTFA-PKTAWL-AFLKMIGEL--FPGSSR-----ATS-AYLH 185 (219)
T ss_pred EEEEhhHHHhCCHH------HHHHHHHHHHHHhCCCEEEEEC-CCchHH-HHHHHHHhh--CcCccc-----ccc-eEEe
Confidence 88764321111000 0125888999998877666553 222221 112222211 111100 000 0113
Q ss_pred CCCHHHHHHHHcCCCeEEEE
Q 025492 225 SATEEGQKVARNGGQTFQAV 244 (252)
Q Consensus 225 ~~t~~e~~~~~~G~~i~~~~ 244 (252)
+..+++......|..+-...
T Consensus 186 ~~~~~~~~l~~~Gf~v~~~~ 205 (219)
T TIGR02021 186 PMTDLERALGELGWKIVREG 205 (219)
T ss_pred cHHHHHHHHHHcCceeeeee
Confidence 55688888888898876554
No 133
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=2.2e-10 Score=100.28 Aligned_cols=118 Identities=17% Similarity=0.187 Sum_probs=88.4
Q ss_pred CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc-EEEEeCCcccccCccCCCCcc
Q 025492 65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQN-ISVVRTNSMKYIPNYFEKGQL 143 (252)
Q Consensus 65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~~~~da~~~l~~~~~~~s~ 143 (252)
+...|||+|||+|.++++.++... ..++|+|+++-+++.|+.|+... +.+. +..-..+. ......+.+
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N------~v~~~~~~~~~~~----~~~~~~~~~ 230 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLN------GVELLVQAKGFLL----LEVPENGPF 230 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHc------CCchhhhcccccc----hhhcccCcc
Confidence 456899999999999999999953 36999999999999999987653 4443 22222222 112223689
Q ss_pred cEEEEeCC-CCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCC
Q 025492 144 TKMFFLFP-DPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPM 205 (252)
Q Consensus 144 d~i~~~fp-dP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~ 205 (252)
|.|+.|.- +|.. .+...+.+.|||||.++++=.-.++.+...+.+.+.++
T Consensus 231 DvIVANILA~vl~------------~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf 281 (300)
T COG2264 231 DVIVANILAEVLV------------ELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGF 281 (300)
T ss_pred cEEEehhhHHHHH------------HHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCC
Confidence 99999863 3322 58889999999999999988778888888888876653
No 134
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.18 E-value=4.4e-10 Score=102.47 Aligned_cols=113 Identities=17% Similarity=0.267 Sum_probs=88.9
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...|||+|||+|.+++.+|.. ...++|||+++.+++.|++++... +++|+.|+.+|+.+.+.. . ...+|.
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~------~~~~~~~~~~d~~~~~~~-~-~~~~D~ 303 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQML------GLDNLSFAALDSAKFATA-Q-MSAPEL 303 (374)
T ss_pred CCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHc------CCCcEEEEECCHHHHHHh-c-CCCCCE
Confidence 358999999999999999965 468999999999999999887654 667999999999754432 1 245899
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHH
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSC 199 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~ 199 (252)
|+++.|- . . ....+++.+. .++|++.+|+..+...++..+...
T Consensus 304 vi~DPPr---~--G-----~~~~~l~~l~-~~~p~~ivyvsc~p~TlaRDl~~L 346 (374)
T TIGR02085 304 VLVNPPR---R--G-----IGKELCDYLS-QMAPKFILYSSCNAQTMAKDIAEL 346 (374)
T ss_pred EEECCCC---C--C-----CcHHHHHHHH-hcCCCeEEEEEeCHHHHHHHHHHh
Confidence 9987551 1 1 2345777775 479999999999998888888765
No 135
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.18 E-value=9.7e-11 Score=98.05 Aligned_cols=102 Identities=20% Similarity=0.312 Sum_probs=83.2
Q ss_pred ceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCC---CC
Q 025492 67 IQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFE---KG 141 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~---~~ 141 (252)
..|||||||.|..++.+|...| +..++.+|+++...+.|++++... ++ ++|+++.+|+.+.++.... .+
T Consensus 47 k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~a------g~~~~I~~~~gda~~~l~~l~~~~~~~ 120 (205)
T PF01596_consen 47 KRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKA------GLDDRIEVIEGDALEVLPELANDGEEG 120 (205)
T ss_dssp SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHT------TGGGGEEEEES-HHHHHHHHHHTTTTT
T ss_pred ceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhc------CCCCcEEEEEeccHhhHHHHHhccCCC
Confidence 4899999999999999999876 689999999999999999988764 55 5799999999877664333 35
Q ss_pred cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025492 142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT 185 (252)
Q Consensus 142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~ 185 (252)
.||.||+.-. | ++ ...+++.+.+.|+|||.+++
T Consensus 121 ~fD~VFiDa~----K-~~------y~~y~~~~~~ll~~ggvii~ 153 (205)
T PF01596_consen 121 QFDFVFIDAD----K-RN------YLEYFEKALPLLRPGGVIIA 153 (205)
T ss_dssp SEEEEEEEST----G-GG------HHHHHHHHHHHEEEEEEEEE
T ss_pred ceeEEEEccc----c-cc------hhhHHHHHhhhccCCeEEEE
Confidence 7999999652 1 11 23689999999999999987
No 136
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=3.6e-10 Score=91.13 Aligned_cols=128 Identities=20% Similarity=0.254 Sum_probs=96.8
Q ss_pred CceEEEEcCcccHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 66 KIQFADIGCGFGGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
..++||||||+|..+..|++. .|+..++++|+++.+++...+.+... --++..+++|....+ ..+++|
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n-------~~~~~~V~tdl~~~l----~~~~VD 112 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN-------RVHIDVVRTDLLSGL----RNESVD 112 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc-------CCccceeehhHHhhh----ccCCcc
Confidence 348999999999999999998 57888999999999988766655442 234889999976444 458999
Q ss_pred EEEEeCC---C-Cccc---------cccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025492 145 KMFFLFP---D-PHFK---------EKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP 204 (252)
Q Consensus 145 ~i~~~fp---d-P~~k---------~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~ 204 (252)
.+..|.| . +.+. ......|-+...++.++-.+|.|.|.+|+.+--.+-...+...+...+
T Consensus 113 vLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g 185 (209)
T KOG3191|consen 113 VLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKG 185 (209)
T ss_pred EEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcc
Confidence 9999865 1 1111 123445667778999999999999999999877777777777555443
No 137
>PLN02476 O-methyltransferase
Probab=99.17 E-value=1.8e-10 Score=100.27 Aligned_cols=103 Identities=13% Similarity=0.138 Sum_probs=83.5
Q ss_pred CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccC---CC
Q 025492 66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYF---EK 140 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~---~~ 140 (252)
...|||||||+|.+++.+|...| +..++++|+++++++.|++++... ++ ++|+++.+|+.+.|+... ..
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~a------Gl~~~I~li~GdA~e~L~~l~~~~~~ 192 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELA------GVSHKVNVKHGLAAESLKSMIQNGEG 192 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCcEEEEEcCHHHHHHHHHhcccC
Confidence 45899999999999999999865 668999999999999999988764 55 489999999988775432 13
Q ss_pred CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025492 141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT 185 (252)
Q Consensus 141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~ 185 (252)
++||.|++.-+-+ . ...+++.+.+.|+|||.|++
T Consensus 193 ~~FD~VFIDa~K~-----~------Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 193 SSYDFAFVDADKR-----M------YQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred CCCCEEEECCCHH-----H------HHHHHHHHHHhcCCCcEEEE
Confidence 6899999854311 1 34699999999999999877
No 138
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.17 E-value=1.4e-09 Score=92.01 Aligned_cols=144 Identities=15% Similarity=0.166 Sum_probs=87.7
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCccc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
...|||||||+|.++..+++.. ..++|+|+++.|++.|++++... +. .++.+..+|+. . .++++|
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~------~~~~~i~~~~~d~~-~-----~~~~fD 129 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEA------GLAGNITFEVGDLE-S-----LLGRFD 129 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhc------CCccCcEEEEcCch-h-----ccCCcC
Confidence 4589999999999999999874 46999999999999998876543 33 57999999943 1 256899
Q ss_pred EEEEeC-----CCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcccccccccccCcc
Q 025492 145 KMFFLF-----PDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPV 219 (252)
Q Consensus 145 ~i~~~f-----pdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 219 (252)
.|++.. |++.. ..+++.+.+.+++++.+. ...... .......+. ..|.... ..+.
T Consensus 130 ~v~~~~~l~~~~~~~~-----------~~~l~~l~~~~~~~~~i~-~~~~~~-~~~~~~~l~--~~~~~~~-----~~~~ 189 (230)
T PRK07580 130 TVVCLDVLIHYPQEDA-----------ARMLAHLASLTRGSLIFT-FAPYTP-LLALLHWIG--GLFPGPS-----RTTR 189 (230)
T ss_pred EEEEcchhhcCCHHHH-----------HHHHHHHHhhcCCeEEEE-ECCccH-HHHHHHHhc--cccCCcc-----CCCC
Confidence 998643 33321 247777777665444333 222222 111222221 1121110 0011
Q ss_pred ccCCCCCCHHHHHHHHcCCCeEEEE
Q 025492 220 VKLLSSATEEGQKVARNGGQTFQAV 244 (252)
Q Consensus 220 ~~~~~~~t~~e~~~~~~G~~i~~~~ 244 (252)
. ......+++......|.++....
T Consensus 190 ~-~~~~~~~~~~~l~~~Gf~~~~~~ 213 (230)
T PRK07580 190 I-YPHREKGIRRALAAAGFKVVRTE 213 (230)
T ss_pred c-cccCHHHHHHHHHHCCCceEeee
Confidence 0 11233467777888888876654
No 139
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.16 E-value=1.3e-09 Score=90.36 Aligned_cols=153 Identities=14% Similarity=0.082 Sum_probs=92.9
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...|||||||+|.++..++... ...++|||+++.+++.|+. .++.++++|+.+.++ .++++++|.
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~-------------~~~~~~~~d~~~~l~-~~~~~sfD~ 78 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA-------------RGVNVIQGDLDEGLE-AFPDKSFDY 78 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH-------------cCCeEEEEEhhhccc-ccCCCCcCE
Confidence 4589999999999999998763 5678999999999876542 146788888764332 256789999
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcccccc--cccccCccccCC
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTK--EELEADPVVKLL 223 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~~~~~ 223 (252)
|+++.+-.|... ...+++++.++ +|.+++...+..+.......+.. ..+..... ..+...+. ...
T Consensus 79 Vi~~~~l~~~~d--------~~~~l~e~~r~---~~~~ii~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~ 145 (194)
T TIGR02081 79 VILSQTLQATRN--------PEEILDEMLRV---GRHAIVSFPNFGYWRVRWSILTK-GRMPVTGELPYDWYNTPN-IHF 145 (194)
T ss_pred EEEhhHhHcCcC--------HHHHHHHHHHh---CCeEEEEcCChhHHHHHHHHHhC-CccccCCCCCccccCCCC-ccc
Confidence 998764333221 12467776665 45555655554333322222221 11111100 00111111 112
Q ss_pred CCCCHHHHHHHHcCCCeEEEEEE
Q 025492 224 SSATEEGQKVARNGGQTFQAVFR 246 (252)
Q Consensus 224 ~~~t~~e~~~~~~G~~i~~~~~~ 246 (252)
....++.+.....|.++-...+.
T Consensus 146 ~s~~~~~~ll~~~Gf~v~~~~~~ 168 (194)
T TIGR02081 146 CTIADFEDLCGELNLRILDRAAF 168 (194)
T ss_pred CcHHHHHHHHHHCCCEEEEEEEe
Confidence 45557889999999999877765
No 140
>PRK06202 hypothetical protein; Provisional
Probab=99.16 E-value=1.9e-10 Score=98.02 Aligned_cols=101 Identities=15% Similarity=0.183 Sum_probs=70.9
Q ss_pred CceEEEEcCcccHHHHHHHHH----CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCC
Q 025492 66 KIQFADIGCGFGGLLISLSTL----FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKG 141 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~----~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~ 141 (252)
...|||||||+|.++..|++. .++..++|+|+++.|++.|+++. ...++.+...++. .++ ++++
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~---------~~~~~~~~~~~~~-~l~--~~~~ 128 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANP---------RRPGVTFRQAVSD-ELV--AEGE 128 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcc---------ccCCCeEEEEecc-ccc--ccCC
Confidence 458999999999999998864 45679999999999999887643 2235666666654 343 3578
Q ss_pred cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
++|.|++++.--+.... ....+++++.++++ |.+++.
T Consensus 129 ~fD~V~~~~~lhh~~d~------~~~~~l~~~~r~~~--~~~~i~ 165 (232)
T PRK06202 129 RFDVVTSNHFLHHLDDA------EVVRLLADSAALAR--RLVLHN 165 (232)
T ss_pred CccEEEECCeeecCChH------HHHHHHHHHHHhcC--eeEEEe
Confidence 99999987643222110 01259999999998 444443
No 141
>PHA03412 putative methyltransferase; Provisional
Probab=99.13 E-value=4.4e-10 Score=95.27 Aligned_cols=102 Identities=12% Similarity=0.187 Sum_probs=74.0
Q ss_pred CceEEEEcCcccHHHHHHHHHC---CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCc
Q 025492 66 KIQFADIGCGFGGLLISLSTLF---PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQ 142 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~---p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s 142 (252)
...|||+|||+|.+++.+++.. +...++|||+++.+++.|+.+ ..++.++.+|+.. .. + +++
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n-----------~~~~~~~~~D~~~-~~--~-~~~ 114 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRI-----------VPEATWINADALT-TE--F-DTL 114 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhh-----------ccCCEEEEcchhc-cc--c-cCC
Confidence 4589999999999999999874 356899999999999888754 2358899999853 22 2 568
Q ss_pred ccEEEEeCCCCcccccccc----ccccCHHHHHHHHHhhcCCcE
Q 025492 143 LTKMFFLFPDPHFKEKNHR----RRVISPHLLDEYAYVLGVGGI 182 (252)
Q Consensus 143 ~d~i~~~fpdP~~k~~h~k----rr~~~~~~l~~~~~~LkpgG~ 182 (252)
+|.|+.|.|---.+..+.+ ...+...+++.+.+++++|+.
T Consensus 115 FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 115 FDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 9999999763322222222 224456688888886666664
No 142
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.13 E-value=5.4e-10 Score=95.46 Aligned_cols=115 Identities=16% Similarity=0.175 Sum_probs=82.8
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEe----CCcccccCccCCCCc
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVR----TNSMKYIPNYFEKGQ 142 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~----~da~~~l~~~~~~~s 142 (252)
..+||+|||+|.+++.++...|.+.+++||.|+.++..|.+|+..++ -...+.+++ .|+. .+.-+..+.
T Consensus 150 ~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~-----l~g~i~v~~~~me~d~~--~~~~l~~~~ 222 (328)
T KOG2904|consen 150 THILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLK-----LSGRIEVIHNIMESDAS--DEHPLLEGK 222 (328)
T ss_pred ceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHh-----hcCceEEEecccccccc--cccccccCc
Confidence 37999999999999999999999999999999999999999987762 223455553 4432 333355788
Q ss_pred ccEEEEeCCCCcccc-----------cccccc---------ccCHHHHHHHHHhhcCCcEEEEEeCch
Q 025492 143 LTKMFFLFPDPHFKE-----------KNHRRR---------VISPHLLDEYAYVLGVGGIIYTITDVE 190 (252)
Q Consensus 143 ~d~i~~~fpdP~~k~-----------~h~krr---------~~~~~~l~~~~~~LkpgG~l~~~td~~ 190 (252)
+|.++.|.| +.+. .+..+. -+..-++.-+.|.|+|||.+.|.++..
T Consensus 223 ~dllvsNPP--YI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~ 288 (328)
T KOG2904|consen 223 IDLLVSNPP--YIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER 288 (328)
T ss_pred eeEEecCCC--cccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc
Confidence 999988865 1111 111110 111236777889999999999998843
No 143
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.13 E-value=2e-10 Score=101.83 Aligned_cols=109 Identities=17% Similarity=0.289 Sum_probs=88.1
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC-CcccccCccCCCCccc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT-NSMKYIPNYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~-da~~~l~~~~~~~s~d 144 (252)
+..|||-=||+|.+++..... +++++|+|++..|++.|..|+... ++....++.. ||. .++ |++.++|
T Consensus 198 G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y------~i~~~~~~~~~Da~-~lp--l~~~~vd 266 (347)
T COG1041 198 GELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYY------GIEDYPVLKVLDAT-NLP--LRDNSVD 266 (347)
T ss_pred CCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhh------CcCceeEEEecccc-cCC--CCCCccc
Confidence 559999999999999999999 889999999999999999998764 5677777776 987 577 8788899
Q ss_pred EEEEeCCCCccccccccccc----cCHHHHHHHHHhhcCCcEEEEEeC
Q 025492 145 KMFFLFPDPHFKEKNHRRRV----ISPHLLDEYAYVLGVGGIIYTITD 188 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~----~~~~~l~~~~~~LkpgG~l~~~td 188 (252)
.|... |..-.+-..... ...++|+.++.+||+||.++|.++
T Consensus 267 aIatD---PPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 267 AIATD---PPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred eEEec---CCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 99874 443332211111 246799999999999999999998
No 144
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.12 E-value=9.1e-10 Score=89.36 Aligned_cols=98 Identities=17% Similarity=0.177 Sum_probs=72.9
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...|||||||+|.++..++++ ...++|+|+++.+++.+++++. ..+|+.++++|+.+ ++ +++..+|.
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~--------~~~~v~ii~~D~~~-~~--~~~~~~d~ 80 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFA--------AADNLTVIHGDALK-FD--LPKLQPYK 80 (169)
T ss_pred cCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhc--------cCCCEEEEECchhc-CC--ccccCCCE
Confidence 458999999999999999998 5689999999999998877652 24689999999874 33 44456899
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHh--hcCCcEEEEEe
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYV--LGVGGIIYTIT 187 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~--LkpgG~l~~~t 187 (252)
|+.|.|-.. ...++..+... +.++|.|.++.
T Consensus 81 vi~n~Py~~-----------~~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 81 VVGNLPYNI-----------STPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred EEECCCccc-----------HHHHHHHHHhcCCCcceEEEEEEH
Confidence 988865322 12455555433 34788888865
No 145
>PLN02672 methionine S-methyltransferase
Probab=99.10 E-value=1.6e-09 Score=109.06 Aligned_cols=134 Identities=13% Similarity=0.206 Sum_probs=92.9
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhc----------CCCCcccEEEEeCCcccccCc
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVS----------NPGQYQNISVVRTNSMKYIPN 136 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~----------~~~~~~nv~~~~~da~~~l~~ 136 (252)
..|||||||+|.+++.+|+.+|...++|+|+|+.+++.|+.|+...... ......+|.|+++|+...+..
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~ 199 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRD 199 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccc
Confidence 3799999999999999999999889999999999999999988653100 001235799999998643311
Q ss_pred cCCCCcccEEEEeCC-----C-----Cccccccc----------cccc-----------cCHHHHHHHHHhhcCCcEEEE
Q 025492 137 YFEKGQLTKMFFLFP-----D-----PHFKEKNH----------RRRV-----------ISPHLLDEYAYVLGVGGIIYT 185 (252)
Q Consensus 137 ~~~~~s~d~i~~~fp-----d-----P~~k~~h~----------krr~-----------~~~~~l~~~~~~LkpgG~l~~ 185 (252)
....+|.|+.|.| + |-.+ .|. .--+ ....++.+..++|+|||.+++
T Consensus 200 --~~~~fDlIVSNPPYI~~~e~~~l~~eV~-~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 200 --NNIELDRIVGCIPQILNPNPEAMSKLVT-ENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred --cCCceEEEEECCCcCCCcchhhcChhhh-hccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 0136999999876 1 1100 010 0011 115688899999999999999
Q ss_pred EeCchHHHHHHH-HHHhcCC
Q 025492 186 ITDVEELGDWMR-SCLENHP 204 (252)
Q Consensus 186 ~td~~~~~~~~~-~~~~~~~ 204 (252)
-... ...+.+. +.+...+
T Consensus 277 EiG~-~q~~~v~~~l~~~~g 295 (1082)
T PLN02672 277 NMGG-RPGQAVCERLFERRG 295 (1082)
T ss_pred EECc-cHHHHHHHHHHHHCC
Confidence 8864 4555555 4565543
No 146
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.10 E-value=5.1e-10 Score=100.12 Aligned_cols=123 Identities=15% Similarity=0.196 Sum_probs=82.2
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc----ccEEEEeCCccc-ccCccCCC
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY----QNISVVRTNSMK-YIPNYFEK 140 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~----~nv~~~~~da~~-~l~~~~~~ 140 (252)
+..|||||||.|.=+....... -..++|+||+...|+.|+++...++....... -...|+.+|... .+...+.+
T Consensus 63 ~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 63 GLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp T-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 5699999999999888888775 35799999999999999999866542211111 246778887642 23344555
Q ss_pred C--cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHH
Q 025492 141 G--QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELG 193 (252)
Q Consensus 141 ~--s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~ 193 (252)
. .+|.|.+.|.-...-....+- ..+|+.++..|+|||.|+.+|.+.+..
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~a----r~~l~Nvs~~Lk~GG~FIgT~~d~~~i 192 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKA----RQFLKNVSSLLKPGGYFIGTTPDSDEI 192 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHH----HHHHHHHHHTEEEEEEEEEEEE-HHHH
T ss_pred cCCCcceeehHHHHHHhcCCHHHH----HHHHHHHHHhcCCCCEEEEEecCHHHH
Confidence 4 999999998654432222111 259999999999999999999775443
No 147
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.10 E-value=3.4e-10 Score=99.58 Aligned_cols=113 Identities=19% Similarity=0.214 Sum_probs=81.5
Q ss_pred CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc-EEEEeCCcccccCccCCCCcc
Q 025492 65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQN-ISVVRTNSMKYIPNYFEKGQL 143 (252)
Q Consensus 65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~~~~da~~~l~~~~~~~s~ 143 (252)
+...|||||||+|.+++..++... ..++|+|+++.+++.|++|+... ++.. +.+ .... ......+
T Consensus 161 ~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N------~~~~~~~v--~~~~-----~~~~~~~ 226 (295)
T PF06325_consen 161 PGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELN------GVEDRIEV--SLSE-----DLVEGKF 226 (295)
T ss_dssp TTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHT------T-TTCEEE--SCTS-----CTCCS-E
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHc------CCCeeEEE--EEec-----ccccccC
Confidence 456999999999999999999853 47999999999999999987653 5544 333 2211 1224889
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhc
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLEN 202 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~ 202 (252)
|.|+.|.-.+-. ..++..+.++|+|||.++++=--.+..+.+.+.+..
T Consensus 227 dlvvANI~~~vL-----------~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~ 274 (295)
T PF06325_consen 227 DLVVANILADVL-----------LELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ 274 (295)
T ss_dssp EEEEEES-HHHH-----------HHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT
T ss_pred CEEEECCCHHHH-----------HHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC
Confidence 999998632221 247777888999999999976666677778888864
No 148
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.10 E-value=9.1e-10 Score=90.39 Aligned_cols=117 Identities=19% Similarity=0.245 Sum_probs=83.4
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCe---------EEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccC
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVL---------MIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIP 135 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~---------~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~ 135 (252)
...+||--||+|.++++.|...++.. ++|+|+++.+++.|+.|+... +. ..+.+.+.|+.. ++
T Consensus 29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~a------g~~~~i~~~~~D~~~-l~ 101 (179)
T PF01170_consen 29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAA------GVEDYIDFIQWDARE-LP 101 (179)
T ss_dssp TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHT------T-CGGEEEEE--GGG-GG
T ss_pred CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhc------ccCCceEEEecchhh-cc
Confidence 45899999999999999999877766 999999999999999998764 33 458999999974 55
Q ss_pred ccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHH
Q 025492 136 NYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEEL 192 (252)
Q Consensus 136 ~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~ 192 (252)
+.++++|.|+.|.|=--.-..+..-.-+...+++++.++|++ ..+++.+.++.+
T Consensus 102 --~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~~~~ 155 (179)
T PF01170_consen 102 --LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSNREL 155 (179)
T ss_dssp --GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESCCCH
T ss_pred --cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCHHH
Confidence 567899999998653221111111233456789999999999 666666766554
No 149
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.07 E-value=5.5e-09 Score=92.96 Aligned_cols=151 Identities=12% Similarity=0.141 Sum_probs=89.1
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...|||||||+|.++..+++. +..++|+|+|+.|++.|+++...... ...+..++.|..+|+.+ + ++++|.
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~-~~~~~~~~~f~~~Dl~~-l-----~~~fD~ 215 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALA-ALPPEVLPKFEANDLES-L-----SGKYDT 215 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhccc-ccccccceEEEEcchhh-c-----CCCcCE
Confidence 458999999999999999987 57899999999999999887643200 01123578899888642 2 467888
Q ss_pred EEEe-----CCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcccccccccccCccc
Q 025492 146 MFFL-----FPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVV 220 (252)
Q Consensus 146 i~~~-----fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 220 (252)
|++. +|+... ..+++.+.+ +.+||. ++..........+...+... |... .....
T Consensus 216 Vv~~~vL~H~p~~~~-----------~~ll~~l~~-l~~g~l-iIs~~p~~~~~~~l~~~g~~--~~g~-----~~~~r- 274 (315)
T PLN02585 216 VTCLDVLIHYPQDKA-----------DGMIAHLAS-LAEKRL-IISFAPKTLYYDILKRIGEL--FPGP-----SKATR- 274 (315)
T ss_pred EEEcCEEEecCHHHH-----------HHHHHHHHh-hcCCEE-EEEeCCcchHHHHHHHHHhh--cCCC-----CcCce-
Confidence 8643 333211 136666664 455555 44433222222222222211 1100 00000
Q ss_pred cCCCCCCHHHHHHHHcCCCeEEEEEE
Q 025492 221 KLLSSATEEGQKVARNGGQTFQAVFR 246 (252)
Q Consensus 221 ~~~~~~t~~e~~~~~~G~~i~~~~~~ 246 (252)
.+.....++++.....|.++.....+
T Consensus 275 ~y~~s~eel~~lL~~AGf~v~~~~~~ 300 (315)
T PLN02585 275 AYLHAEADVERALKKAGWKVARREMT 300 (315)
T ss_pred eeeCCHHHHHHHHHHCCCEEEEEEEe
Confidence 11234567888888999988655443
No 150
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.04 E-value=1.8e-09 Score=90.82 Aligned_cols=133 Identities=14% Similarity=0.167 Sum_probs=84.4
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhc---CC--------------------------
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVS---NP-------------------------- 117 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~---~~-------------------------- 117 (252)
..+|||||-+|.+++.+|+.+....++|+||++..|+.|+.++...-+. ..
T Consensus 60 ~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t~ 139 (288)
T KOG2899|consen 60 KQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFTT 139 (288)
T ss_pred ceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccccc
Confidence 3799999999999999999998889999999999999998876432110 00
Q ss_pred CCcccEEEEeCCcc----cccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe-CchHH
Q 025492 118 GQYQNISVVRTNSM----KYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT-DVEEL 192 (252)
Q Consensus 118 ~~~~nv~~~~~da~----~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t-d~~~~ 192 (252)
.-..|+.|...+.. ++| .+....+|.|.+.--.-|..--++..-+ ..|++.+.++|.|||+|++.- .|+.|
T Consensus 140 ~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL--~~ff~kis~ll~pgGiLvvEPQpWksY 215 (288)
T KOG2899|consen 140 DFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGL--RRFFRKISSLLHPGGILVVEPQPWKSY 215 (288)
T ss_pred cCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHH--HHHHHHHHHhhCcCcEEEEcCCchHHH
Confidence 00114444333322 112 1335678888754434443322222111 259999999999999999864 34444
Q ss_pred H--HHHHHHHhcC
Q 025492 193 G--DWMRSCLENH 203 (252)
Q Consensus 193 ~--~~~~~~~~~~ 203 (252)
- ..+.+.+..+
T Consensus 216 ~kaar~~e~~~~n 228 (288)
T KOG2899|consen 216 KKAARRSEKLAAN 228 (288)
T ss_pred HHHHHHHHHhhcC
Confidence 3 3344445444
No 151
>PLN02823 spermine synthase
Probab=99.04 E-value=4e-09 Score=94.57 Aligned_cols=130 Identities=11% Similarity=0.105 Sum_probs=96.2
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM 146 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i 146 (252)
..||.||+|.|..+..+++..+...++.||+++++++.|++.+.... ....-++++++.+|+...+.. .++.+|.|
T Consensus 105 k~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~--~~~~dprv~v~~~Da~~~L~~--~~~~yDvI 180 (336)
T PLN02823 105 KTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNR--EAFCDKRLELIINDARAELEK--RDEKFDVI 180 (336)
T ss_pred CEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhccccc--ccccCCceEEEEChhHHHHhh--CCCCccEE
Confidence 37999999999999988887667789999999999999987653210 001246899999999877753 35789999
Q ss_pred EEeCCCCccccccccccccCHHHHH-HHHHhhcCCcEEEEEeCc------hHHHHHHHHHHhc
Q 025492 147 FFLFPDPHFKEKNHRRRVISPHLLD-EYAYVLGVGGIIYTITDV------EELGDWMRSCLEN 202 (252)
Q Consensus 147 ~~~fpdP~~k~~h~krr~~~~~~l~-~~~~~LkpgG~l~~~td~------~~~~~~~~~~~~~ 202 (252)
++..+||+... .-..+.+.+|++ .+.+.|+|||.+++..-. .+....+.+.+.+
T Consensus 181 i~D~~dp~~~~--~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~ 241 (336)
T PLN02823 181 IGDLADPVEGG--PCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQ 241 (336)
T ss_pred EecCCCccccC--cchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHH
Confidence 99988887321 112366778998 999999999999876422 3344455555543
No 152
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.01 E-value=5e-09 Score=94.82 Aligned_cols=112 Identities=16% Similarity=0.287 Sum_probs=85.7
Q ss_pred eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCcc-----C---C
Q 025492 68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNY-----F---E 139 (252)
Q Consensus 68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~-----~---~ 139 (252)
.|||+|||+|.+++.+|+.. ..++|||+++.+++.|++++... ++.|+.|+.+|+.+.+... + .
T Consensus 200 ~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~------~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 271 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAAN------NIDNVQIIRMSAEEFTQAMNGVREFRRLK 271 (353)
T ss_pred cEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHc------CCCcEEEEEcCHHHHHHHHhhcccccccc
Confidence 69999999999999999985 37999999999999999987653 7789999999997655321 1 0
Q ss_pred -----CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHH
Q 025492 140 -----KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCL 200 (252)
Q Consensus 140 -----~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~ 200 (252)
...+|.|++..|- + . ..+.+++.+. +|++.+|+.+|...++..+....
T Consensus 272 ~~~~~~~~~d~v~lDPPR---~-G------~~~~~l~~l~---~~~~ivYvsC~p~tlaRDl~~L~ 324 (353)
T TIGR02143 272 GIDLKSYNCSTIFVDPPR---A-G------LDPDTCKLVQ---AYERILYISCNPETLKANLEQLS 324 (353)
T ss_pred ccccccCCCCEEEECCCC---C-C------CcHHHHHHHH---cCCcEEEEEcCHHHHHHHHHHHh
Confidence 1136888886552 1 1 1234656554 48999999999999998888655
No 153
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.01 E-value=5.4e-09 Score=94.90 Aligned_cols=113 Identities=15% Similarity=0.227 Sum_probs=85.6
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCC-------
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFE------- 139 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~------- 139 (252)
..+||++||+|.+++.+|+.. ..++|||+++.+++.|++++... +++|+.|+.+|+...+.....
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~------~~~~v~~~~~d~~~~l~~~~~~~~~~~~ 279 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAAN------GIDNVQIIRMSAEEFTQAMNGVREFNRL 279 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHh------CCCcEEEEECCHHHHHHHHhhccccccc
Confidence 369999999999999999885 47999999999999999887654 678999999999765542111
Q ss_pred ------CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHH
Q 025492 140 ------KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCL 200 (252)
Q Consensus 140 ------~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~ 200 (252)
...+|.|++..| .. . ....+++.+.+ |++.+|+.+|...++..+....
T Consensus 280 ~~~~~~~~~~D~v~lDPP---R~-G------~~~~~l~~l~~---~~~ivyvSC~p~tlarDl~~L~ 333 (362)
T PRK05031 280 KGIDLKSYNFSTIFVDPP---RA-G------LDDETLKLVQA---YERILYISCNPETLCENLETLS 333 (362)
T ss_pred ccccccCCCCCEEEECCC---CC-C------CcHHHHHHHHc---cCCEEEEEeCHHHHHHHHHHHc
Confidence 124798888554 21 1 22356666554 7999999999988887777554
No 154
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.00 E-value=2.5e-09 Score=91.93 Aligned_cols=104 Identities=17% Similarity=0.209 Sum_probs=83.6
Q ss_pred CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCC----C
Q 025492 66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFE----K 140 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~----~ 140 (252)
...|||||++.|..++.+|...| +..++.+|+++...+.|+.++... +-.++|.++.+|+.+.|+.... .
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~a-----g~~~~I~~~~G~a~e~L~~l~~~~~~~ 154 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKA-----GVAHKIDFREGPALPVLDQMIEDGKYH 154 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHC-----CCCCceEEEeccHHHHHHHHHhccccC
Confidence 45899999999999999999864 779999999999999999888764 2246899999999887765332 3
Q ss_pred CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025492 141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT 185 (252)
Q Consensus 141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~ 185 (252)
++||.||+.- + |. -...+++.+.+.|+|||.|++
T Consensus 155 ~~fD~iFiDa---d-K~-------~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 155 GTFDFIFVDA---D-KD-------NYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred CcccEEEecC---C-HH-------HhHHHHHHHHHhcCCCeEEEE
Confidence 6899999853 2 11 134689999999999999876
No 155
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.97 E-value=4.2e-09 Score=87.75 Aligned_cols=99 Identities=21% Similarity=0.396 Sum_probs=74.6
Q ss_pred CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccCCCCcc
Q 025492 65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYFEKGQL 143 (252)
Q Consensus 65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~~~~s~ 143 (252)
++.+|||+.||.|.|++.+|+..+...++++|+++.+++...+++... ++. ++.++++|+.+.++ .+.+
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lN------kv~~~i~~~~~D~~~~~~----~~~~ 170 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLN------KVENRIEVINGDAREFLP----EGKF 170 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHT------T-TTTEEEEES-GGG-------TT-E
T ss_pred cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHc------CCCCeEEEEcCCHHHhcC----cccc
Confidence 366999999999999999999777889999999999999999988664 443 58999999985433 7889
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT 185 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~ 185 (252)
|.|+++.|.--. .||..+...+++||.+++
T Consensus 171 drvim~lp~~~~------------~fl~~~~~~~~~~g~ihy 200 (200)
T PF02475_consen 171 DRVIMNLPESSL------------EFLDAALSLLKEGGIIHY 200 (200)
T ss_dssp EEEEE--TSSGG------------GGHHHHHHHEEEEEEEEE
T ss_pred CEEEECChHHHH------------HHHHHHHHHhcCCcEEEC
Confidence 999998874332 499999999999999874
No 156
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.96 E-value=3.4e-08 Score=87.93 Aligned_cols=136 Identities=13% Similarity=0.094 Sum_probs=84.5
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEe-CCcccccCcc-CCCCc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVR-TNSMKYIPNY-FEKGQ 142 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~-~da~~~l~~~-~~~~s 142 (252)
...+||||||+|.+...++.+.++..++|+|+++.+++.|+.++... .++ .+|.++. .|....+... .+.+.
T Consensus 115 ~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~N-----p~l~~~I~~~~~~~~~~i~~~i~~~~~~ 189 (321)
T PRK11727 115 NVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISAN-----PGLNGAIRLRLQKDSKAIFKGIIHKNER 189 (321)
T ss_pred CceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc-----cCCcCcEEEEEccchhhhhhcccccCCc
Confidence 46899999999999999999988999999999999999999988652 123 3577754 4433222222 23568
Q ss_pred ccEEEEeCCCCccccc-----ccccccc--------CHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcccc
Q 025492 143 LTKMFFLFPDPHFKEK-----NHRRRVI--------SPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEAL 209 (252)
Q Consensus 143 ~d~i~~~fpdP~~k~~-----h~krr~~--------~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~ 209 (252)
||.|++|.|---.... ..+.|-. .-.|=.....++.+||.+.|... +...........++|..+
T Consensus 190 fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~---mi~eS~~~~~~~gwftsm 266 (321)
T PRK11727 190 FDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKR---MIEESKAFAKQVLWFTSL 266 (321)
T ss_pred eEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehH---hhHHHHHHHhhCcEEEEE
Confidence 9999998762211110 0000000 00111234566779999988763 344444444445555444
No 157
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.96 E-value=1e-08 Score=84.86 Aligned_cols=108 Identities=19% Similarity=0.161 Sum_probs=76.1
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCc-c
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQ-L 143 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s-~ 143 (252)
+..|||++||+|.+++.++.+.. ..+++||+++.+++.+++++... +. .++.++++|+...+........ +
T Consensus 50 g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~------~~~~~~~~~~~D~~~~l~~~~~~~~~~ 122 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALL------KSGEQAEVVRNSALRALKFLAKKPTFD 122 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHh------CCcccEEEEehhHHHHHHHhhccCCCc
Confidence 45899999999999999999964 37999999999999999888765 44 3799999999655543222233 4
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHHH--hhcCCcEEEEEeCc
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAY--VLGVGGIIYTITDV 189 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~--~LkpgG~l~~~td~ 189 (252)
|.|++ ||.+... .....+..+.. +|+++|.+++.+..
T Consensus 123 dvv~~---DPPy~~~------~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 123 NVIYL---DPPFFNG------ALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred eEEEE---CcCCCCC------cHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 55554 4443321 12345555543 68899998887643
No 158
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.95 E-value=7.9e-09 Score=94.32 Aligned_cols=103 Identities=13% Similarity=0.043 Sum_probs=82.3
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM 146 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i 146 (252)
..|||++||+|.+++.+|...+...++++|+++.+++.+++|+... ++.++.+.++|+...+.. ...+|.|
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N------~~~~~~v~~~Da~~~l~~---~~~fD~V 129 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELN------GLENEKVFNKDANALLHE---ERKFDVV 129 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh------CCCceEEEhhhHHHHHhh---cCCCCEE
Confidence 4799999999999999999876568999999999999999988654 677888999999754432 4569999
Q ss_pred EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE-eCch
Q 025492 147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI-TDVE 190 (252)
Q Consensus 147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~-td~~ 190 (252)
.++.| .. ...++....+.+++||.++++ ||..
T Consensus 130 ~lDP~----Gs--------~~~~l~~al~~~~~~gilyvSAtD~~ 162 (382)
T PRK04338 130 DIDPF----GS--------PAPFLDSAIRSVKRGGLLCVTATDTA 162 (382)
T ss_pred EECCC----CC--------cHHHHHHHHHHhcCCCEEEEEecCch
Confidence 98643 11 125888878889999999996 4443
No 159
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.94 E-value=6.3e-09 Score=88.18 Aligned_cols=108 Identities=12% Similarity=0.050 Sum_probs=75.4
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHH------HHhhcCCCCcccEEEEeCCcccccCcc-C
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERIL------ALRVSNPGQYQNISVVRTNSMKYIPNY-F 138 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~------~~~~~~~~~~~nv~~~~~da~~~l~~~-~ 138 (252)
...||..|||.|.-+..||.+ +..|+|+|+|+.+++.+.+... ..+........+|.++++|+.+ ++.. -
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~-l~~~~~ 120 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFN-LPKIAN 120 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcC-CCcccc
Confidence 458999999999999999999 7789999999999988754210 0000001123479999999864 4310 1
Q ss_pred CCCcccEEEE-----eCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 139 EKGQLTKMFF-----LFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 139 ~~~s~d~i~~-----~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
..+.+|.|+- .+|... ...+++.+.++|+|||.+++.+
T Consensus 121 ~~~~fD~VyDra~~~Alpp~~-----------R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALPNDL-----------RTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred ccCCcCeeeeehhHhcCCHHH-----------HHHHHHHHHHHhCCCcEEEEEE
Confidence 1257888773 232211 2369999999999999998876
No 160
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=6.6e-09 Score=84.62 Aligned_cols=116 Identities=13% Similarity=0.190 Sum_probs=81.6
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...|+|+|||+|.+++..+...| ..++|||+++++++.+++|+.+ ...+|.|+.+|+.+ + .+.+|.
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~-------l~g~v~f~~~dv~~-~-----~~~~dt 111 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEE-------LLGDVEFVVADVSD-F-----RGKFDT 111 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHh-------hCCceEEEEcchhh-c-----CCccce
Confidence 45799999999999999998865 5799999999999999988765 46689999999874 3 346778
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCC
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPM 205 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~ 205 (252)
++.|.|.--. .+|..+ .|+....+.- -.+|- ..+....+++.....+.++
T Consensus 112 vimNPPFG~~-~rhaDr-----~Fl~~Ale~s---~vVYs-iH~a~~~~f~~~~~~~~G~ 161 (198)
T COG2263 112 VIMNPPFGSQ-RRHADR-----PFLLKALEIS---DVVYS-IHKAGSRDFVEKFAADLGG 161 (198)
T ss_pred EEECCCCccc-cccCCH-----HHHHHHHHhh---heEEE-eeccccHHHHHHHHHhcCC
Confidence 8888775543 445544 4665554442 33332 2233355555656666654
No 161
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.88 E-value=4.2e-09 Score=88.63 Aligned_cols=96 Identities=15% Similarity=0.144 Sum_probs=67.1
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcc----cccCccCCCCc
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSM----KYIPNYFEKGQ 142 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~----~~l~~~~~~~s 142 (252)
..++|+|||+|.-++.+|..+ .+|||+|+|+.|++.|.+. +++...+.-.. +.++..-.++|
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~------------~~~~y~~t~~~ms~~~~v~L~g~e~S 100 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKH------------PPVTYCHTPSTMSSDEMVDLLGGEES 100 (261)
T ss_pred ceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcC------------CCcccccCCccccccccccccCCCcc
Confidence 489999999997777888774 3689999999999877642 22222222110 11221123889
Q ss_pred ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCc-EEEE
Q 025492 143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGG-IIYT 185 (252)
Q Consensus 143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG-~l~~ 185 (252)
+|.|.+--.-.|+. .+.|.+++.|+||+.| .+.+
T Consensus 101 VDlI~~Aqa~HWFd---------le~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 101 VDLITAAQAVHWFD---------LERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred eeeehhhhhHHhhc---------hHHHHHHHHHHcCCCCCEEEE
Confidence 99999876666764 4579999999999766 5544
No 162
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=3.5e-08 Score=91.25 Aligned_cols=119 Identities=17% Similarity=0.236 Sum_probs=94.5
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...+||+=||.|.|++.||++ ...|+|+|+++++++.|+++++. +++.|+.|+.+++.+.....-.....|.
T Consensus 294 ~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~------n~i~N~~f~~~~ae~~~~~~~~~~~~d~ 365 (432)
T COG2265 294 GERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAA------NGIDNVEFIAGDAEEFTPAWWEGYKPDV 365 (432)
T ss_pred CCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHH------cCCCcEEEEeCCHHHHhhhccccCCCCE
Confidence 458999999999999999977 66899999999999999998866 4899999999999875554333457899
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcC
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENH 203 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~ 203 (252)
|++..| .+ . ..+.+++.+.+ ++|-..+|++++...++..+.......
T Consensus 366 VvvDPP---R~--G-----~~~~~lk~l~~-~~p~~IvYVSCNP~TlaRDl~~L~~~g 412 (432)
T COG2265 366 VVVDPP---RA--G-----ADREVLKQLAK-LKPKRIVYVSCNPATLARDLAILASTG 412 (432)
T ss_pred EEECCC---CC--C-----CCHHHHHHHHh-cCCCcEEEEeCCHHHHHHHHHHHHhCC
Confidence 998654 11 1 23357776665 588999999999999988887666544
No 163
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.87 E-value=1.3e-08 Score=88.82 Aligned_cols=130 Identities=15% Similarity=0.127 Sum_probs=91.6
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCccc-ccCccC--CCCc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMK-YIPNYF--EKGQ 142 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~-~l~~~~--~~~s 142 (252)
...++|+|||.|.=++..-++.- ..++|+||....|+.|+.+.+.+......-.=.+.|+.+|-.. .|...+ ++-.
T Consensus 118 ~~~~~~LgCGKGGDLlKw~kAgI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~ 196 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGDLLKWDKAGI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR 196 (389)
T ss_pred ccccceeccCCcccHhHhhhhcc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCC
Confidence 45799999999999888877743 3699999999999999998877632111111237888888532 222223 3445
Q ss_pred ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHH
Q 025492 143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCL 200 (252)
Q Consensus 143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~ 200 (252)
+|.|.+.|.....-..-.+-| .+|+.+++.|+|||+++-++++.+...+-+...
T Consensus 197 fDivScQF~~HYaFetee~ar----~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 197 FDIVSCQFAFHYAFETEESAR----IALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG 250 (389)
T ss_pred cceeeeeeeEeeeeccHHHHH----HHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc
Confidence 999998886554333333322 489999999999999999998877766665555
No 164
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.87 E-value=2.3e-08 Score=86.15 Aligned_cols=131 Identities=15% Similarity=0.139 Sum_probs=97.1
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...||=||-|.|..+..+.+..+...++.||+++.+++.|++-+..... ...-++++++.+|+...+...- ...+|.
T Consensus 77 p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~--~~~d~r~~i~~~Dg~~~l~~~~-~~~yDv 153 (246)
T PF01564_consen 77 PKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSE--GLDDPRVRIIIGDGRKFLKETQ-EEKYDV 153 (246)
T ss_dssp T-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHT--TGGSTTEEEEESTHHHHHHTSS-ST-EEE
T ss_pred cCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhcc--ccCCCceEEEEhhhHHHHHhcc-CCcccE
Confidence 3489999999999999998876677999999999999999876654311 1234689999999987776432 228999
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc----hHHHHHHHHHHhcC
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV----EELGDWMRSCLENH 203 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~----~~~~~~~~~~~~~~ 203 (252)
|++..+||...... +.+.+|++.+.+.|+|||.+++.... ......+...+...
T Consensus 154 Ii~D~~dp~~~~~~----l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~ 211 (246)
T PF01564_consen 154 IIVDLTDPDGPAPN----LFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSV 211 (246)
T ss_dssp EEEESSSTTSCGGG----GSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTT
T ss_pred EEEeCCCCCCCccc----ccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHh
Confidence 99999887643222 77889999999999999999997633 34455555556543
No 165
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.85 E-value=8.7e-09 Score=85.49 Aligned_cols=104 Identities=14% Similarity=0.229 Sum_probs=77.1
Q ss_pred eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccE-EEEeCCcccccCcc-----CCCC
Q 025492 68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNI-SVVRTNSMKYIPNY-----FEKG 141 (252)
Q Consensus 68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv-~~~~~da~~~l~~~-----~~~~ 141 (252)
.|||||||+|.++..+|+.+|...+.-.|+++..+......+... +++|+ .-+..|+...-..+ +..+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~------~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~ 101 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEA------GLPNVRPPLALDVSAPPWPWELPAPLSPE 101 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhc------CCcccCCCeEeecCCCCCccccccccCCC
Confidence 599999999999999999999999999999998876666655443 66675 33445554321111 2356
Q ss_pred cccEEEE---eCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 142 QLTKMFF---LFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 142 s~d~i~~---~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
++|.|+. .+-.||.- ...+++.+.++|++||.|++-
T Consensus 102 ~~D~i~~~N~lHI~p~~~---------~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 102 SFDAIFCINMLHISPWSA---------VEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred CcceeeehhHHHhcCHHH---------HHHHHHHHHHhCCCCCEEEEe
Confidence 8999984 23466642 357999999999999999884
No 166
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=8.2e-08 Score=82.18 Aligned_cols=124 Identities=15% Similarity=0.168 Sum_probs=98.2
Q ss_pred CCCceEEEEcCcccHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCc
Q 025492 64 SKKIQFADIGCGFGGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQ 142 (252)
Q Consensus 64 ~~~~~vLDIGcG~G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s 142 (252)
.++.+|||-|+|+|.++.++|+. .|-..++-.|+.....+.|.+.++.. .--+|+.+.+-|+.. .--...+..
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~h-----gi~~~vt~~hrDVc~-~GF~~ks~~ 177 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREH-----GIGDNVTVTHRDVCG-SGFLIKSLK 177 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHh-----CCCcceEEEEeeccc-CCccccccc
Confidence 34679999999999999999999 57788999999998887777766654 234789999999752 211122678
Q ss_pred ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCc-EEEEEeCchHHHHHHHHHHhcCCCc
Q 025492 143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGG-IIYTITDVEELGDWMRSCLENHPMF 206 (252)
Q Consensus 143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG-~l~~~td~~~~~~~~~~~~~~~~~~ 206 (252)
+|.|++..|.|| ..+-.++.+||.+| +|+--|.+-+..+...+.+.+.++-
T Consensus 178 aDaVFLDlPaPw-------------~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~ 229 (314)
T KOG2915|consen 178 ADAVFLDLPAPW-------------EAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFI 229 (314)
T ss_pred cceEEEcCCChh-------------hhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCc
Confidence 999999999999 36666777899766 7777788889999999998887643
No 167
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.83 E-value=3e-08 Score=92.59 Aligned_cols=128 Identities=12% Similarity=0.109 Sum_probs=93.9
Q ss_pred CCceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025492 65 KKIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL 143 (252)
Q Consensus 65 ~~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~ 143 (252)
+...|||++||.|.=+..+|.... ...++++|+++..+...++++..+ ++.|+.+...|+.. +...+ ++.|
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~------G~~nv~v~~~D~~~-~~~~~-~~~f 184 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRC------GVSNVALTHFDGRV-FGAAL-PETF 184 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCeEEEEeCchhh-hhhhc-hhhc
Confidence 356899999999999999999864 458999999999999998888765 88999999999874 43333 4579
Q ss_pred cEEEEeCCCC----cccccccccc----------ccCHHHHHHHHHhhcCCcEEEEEe--CchHHHHHHHHHH
Q 025492 144 TKMFFLFPDP----HFKEKNHRRR----------VISPHLLDEYAYVLGVGGIIYTIT--DVEELGDWMRSCL 200 (252)
Q Consensus 144 d~i~~~fpdP----~~k~~h~krr----------~~~~~~l~~~~~~LkpgG~l~~~t--d~~~~~~~~~~~~ 200 (252)
|.|.+.-|.. +.+....+.+ -.|..+|..+.+.|||||+|+.+| -+.+--+...+.+
T Consensus 185 D~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~ 257 (470)
T PRK11933 185 DAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWL 257 (470)
T ss_pred CeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 9999987744 1111111111 145789999999999999998876 3344444444443
No 168
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.83 E-value=5.6e-08 Score=85.05 Aligned_cols=117 Identities=15% Similarity=0.231 Sum_probs=96.2
Q ss_pred eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCC-cccEEEEeCCcccccCccCCCCcccEE
Q 025492 68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQ-YQNISVVRTNSMKYIPNYFEKGQLTKM 146 (252)
Q Consensus 68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~-~~nv~~~~~da~~~l~~~~~~~s~d~i 146 (252)
.||-||-|.|..+..+.+..+..+++.|||++..++.|++-+... .... -+++.++..|+.+.+.+. ...+|.|
T Consensus 79 ~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~---~~~~~dpRv~i~i~Dg~~~v~~~--~~~fDvI 153 (282)
T COG0421 79 RVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEP---SGGADDPRVEIIIDDGVEFLRDC--EEKFDVI 153 (282)
T ss_pred eEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCc---ccccCCCceEEEeccHHHHHHhC--CCcCCEE
Confidence 899999999999999999988889999999999999998876543 1112 478999999998877643 3389999
Q ss_pred EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHH
Q 025492 147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELG 193 (252)
Q Consensus 147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~ 193 (252)
++.-.||- ..-..+.+..|++.+.+.|+++|.++..+.+..+.
T Consensus 154 i~D~tdp~----gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~ 196 (282)
T COG0421 154 IVDSTDPV----GPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQ 196 (282)
T ss_pred EEcCCCCC----CcccccCCHHHHHHHHHhcCCCcEEEEecCCcccc
Confidence 99988882 23356778899999999999999999996654433
No 169
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.82 E-value=5.4e-08 Score=84.09 Aligned_cols=104 Identities=15% Similarity=0.226 Sum_probs=69.6
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc-
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT- 144 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d- 144 (252)
...|||||||+|.++..++++.+ .++|+|+++.+++.+++++. ..+|+.++++|+.. ++ ++ ++|
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~--------~~~~v~v~~~D~~~-~~--~~--~~d~ 94 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLS--------LYERLEVIEGDALK-VD--LP--DFPK 94 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhC--------cCCcEEEEECchhc-CC--hh--HcCC
Confidence 45899999999999999999975 59999999999988776541 24689999999864 33 21 344
Q ss_pred --EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHH
Q 025492 145 --KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMR 197 (252)
Q Consensus 145 --~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~ 197 (252)
.|+.|.|-.+ ...++..+.. .+|+...+.+-..++++.+.
T Consensus 95 ~~~vvsNlPy~i-----------~~~il~~ll~--~~~~~~~~~~~q~e~a~Rl~ 136 (253)
T TIGR00755 95 QLKVVSNLPYNI-----------SSPLIFKLLE--KPKFRLAVLMVQKEVAERLT 136 (253)
T ss_pred cceEEEcCChhh-----------HHHHHHHHhc--cCCCceEEEEehHHHHHHHc
Confidence 7777766322 2234444433 55554444443445444443
No 170
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.79 E-value=2.8e-08 Score=87.71 Aligned_cols=75 Identities=20% Similarity=0.259 Sum_probs=60.2
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...|||||||.|.++..+++. ...++|+|+++.+++.+++++... ...+|+.++++|+.+ .+ + ..+|.
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~-----~~~~~v~ii~~Dal~-~~--~--~~~d~ 104 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNS-----PLASKLEVIEGDALK-TE--F--PYFDV 104 (294)
T ss_pred cCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhc-----CCCCcEEEEECCHhh-hc--c--cccCE
Confidence 458999999999999999998 457999999999999998876542 125789999999864 32 2 35789
Q ss_pred EEEeCCC
Q 025492 146 MFFLFPD 152 (252)
Q Consensus 146 i~~~fpd 152 (252)
|+.|.|=
T Consensus 105 VvaNlPY 111 (294)
T PTZ00338 105 CVANVPY 111 (294)
T ss_pred EEecCCc
Confidence 9888763
No 171
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.79 E-value=1.7e-08 Score=81.24 Aligned_cols=81 Identities=12% Similarity=0.224 Sum_probs=60.4
Q ss_pred EEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHH
Q 025492 93 IGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDE 172 (252)
Q Consensus 93 iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~ 172 (252)
+|+|+|+.|++.|+++.... ......|+.++++|+. .++ ++++++|.|++.+.-.+... ...++++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~---~~~~~~~i~~~~~d~~-~lp--~~~~~fD~v~~~~~l~~~~d--------~~~~l~e 66 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLK---ARSCYKCIEWIEGDAI-DLP--FDDCEFDAVTMGYGLRNVVD--------RLRAMKE 66 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcc---cccCCCceEEEEechh-hCC--CCCCCeeEEEecchhhcCCC--------HHHHHHH
Confidence 49999999999987654321 1123468999999987 465 67889999998765443321 1369999
Q ss_pred HHHhhcCCcEEEEEe
Q 025492 173 YAYVLGVGGIIYTIT 187 (252)
Q Consensus 173 ~~~~LkpgG~l~~~t 187 (252)
++++|||||.|++..
T Consensus 67 i~rvLkpGG~l~i~d 81 (160)
T PLN02232 67 MYRVLKPGSRVSILD 81 (160)
T ss_pred HHHHcCcCeEEEEEE
Confidence 999999999998753
No 172
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.78 E-value=3.4e-08 Score=85.61 Aligned_cols=72 Identities=18% Similarity=0.355 Sum_probs=58.2
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...|||||||+|.++..+++. ...++|+|+++.+++.+++++. ..+|+.++++|+.+ ++ ++ .+|.
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~--------~~~~v~ii~~D~~~-~~--~~--~~d~ 94 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEI--------AAGNVEIIEGDALK-VD--LP--EFNK 94 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhc--------cCCCEEEEEecccc-CC--ch--hceE
Confidence 458999999999999999999 4589999999999998876542 24689999999864 33 22 4689
Q ss_pred EEEeCCC
Q 025492 146 MFFLFPD 152 (252)
Q Consensus 146 i~~~fpd 152 (252)
|+.|.|-
T Consensus 95 Vv~NlPy 101 (258)
T PRK14896 95 VVSNLPY 101 (258)
T ss_pred EEEcCCc
Confidence 9888763
No 173
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.77 E-value=3e-08 Score=86.67 Aligned_cols=72 Identities=18% Similarity=0.311 Sum_probs=56.1
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
+..|||||||+|.++..++++.+ .++|+|+++.|++.+++++. . +|+.++++|+.+ ++ +++-..+.
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~--------~-~~v~~i~~D~~~-~~--~~~~~~~~ 108 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFA--------E-DNLTIIEGDALK-VD--LSELQPLK 108 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhc--------c-CceEEEEChhhc-CC--HHHcCcce
Confidence 45899999999999999999964 89999999999998876431 2 689999999874 33 22211477
Q ss_pred EEEeCC
Q 025492 146 MFFLFP 151 (252)
Q Consensus 146 i~~~fp 151 (252)
|+.|.|
T Consensus 109 vv~NlP 114 (272)
T PRK00274 109 VVANLP 114 (272)
T ss_pred EEEeCC
Confidence 888865
No 174
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.73 E-value=1e-07 Score=78.53 Aligned_cols=98 Identities=21% Similarity=0.212 Sum_probs=79.6
Q ss_pred eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEE
Q 025492 68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMF 147 (252)
Q Consensus 68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~ 147 (252)
.++|||+|.|-=++.+|-.+|+..++.+|.+...+...+.-+..+ +++|+.++++.+.+ ......+|.|.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L------~L~nv~v~~~R~E~----~~~~~~fd~v~ 120 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVREL------GLSNVEVINGRAEE----PEYRESFDVVT 120 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHH------T-SSEEEEES-HHH----TTTTT-EEEEE
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHh------CCCCEEEEEeeecc----cccCCCccEEE
Confidence 799999999999999999999999999999999888888777776 89999999999975 23467899998
Q ss_pred EeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 148 FLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 148 ~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
.-=-.|.. .+++.+...|++||.+++.-
T Consensus 121 aRAv~~l~------------~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 121 ARAVAPLD------------KLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp EESSSSHH------------HHHHHHGGGEEEEEEEEEEE
T ss_pred eehhcCHH------------HHHHHHHHhcCCCCEEEEEc
Confidence 74333432 58999999999999888765
No 175
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.73 E-value=4.7e-08 Score=83.70 Aligned_cols=95 Identities=21% Similarity=0.281 Sum_probs=70.2
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM 146 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i 146 (252)
..|||||+|.|.++..+++++|+.+++.+|+ +..++.+.+ .++|.++.+|..+ .+|. .|.+
T Consensus 102 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------------~~rv~~~~gd~f~----~~P~--~D~~ 162 (241)
T PF00891_consen 102 KTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------------ADRVEFVPGDFFD----PLPV--ADVY 162 (241)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------------TTTEEEEES-TTT----CCSS--ESEE
T ss_pred cEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------------ccccccccccHHh----hhcc--ccce
Confidence 4799999999999999999999999999998 766665543 4589999999742 3444 8888
Q ss_pred EEeC-CCCccccccccccccCHHHHHHHHHhhcCC--cEEEEEe
Q 025492 147 FFLF-PDPHFKEKNHRRRVISPHLLDEYAYVLGVG--GIIYTIT 187 (252)
Q Consensus 147 ~~~f-pdP~~k~~h~krr~~~~~~l~~~~~~Lkpg--G~l~~~t 187 (252)
++.. --.|.... ...+|+.+++.|+|| |+|+|.-
T Consensus 163 ~l~~vLh~~~d~~-------~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 163 LLRHVLHDWSDED-------CVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp EEESSGGGS-HHH-------HHHHHHHHHHHSEECTTEEEEEEE
T ss_pred eeehhhhhcchHH-------HHHHHHHHHHHhCCCCCCeEEEEe
Confidence 8743 22333211 236999999999999 9998853
No 176
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.73 E-value=2.1e-08 Score=84.76 Aligned_cols=110 Identities=17% Similarity=0.129 Sum_probs=72.1
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhc------CCCCcccEEEEeCCcccccCccCC
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVS------NPGQYQNISVVRTNSMKYIPNYFE 139 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~------~~~~~~nv~~~~~da~~~l~~~~~ 139 (252)
...||..|||.|.-+..||.+ +..|+|+|+|+.+++.+.+........ ......+|.++++|... ++. -.
T Consensus 38 ~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~-l~~-~~ 113 (218)
T PF05724_consen 38 GGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFE-LPP-ED 113 (218)
T ss_dssp SEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTT-GGG-SC
T ss_pred CCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEccccc-CCh-hh
Confidence 568999999999999999998 789999999999998774321110000 00123468999999863 431 11
Q ss_pred CCcccEEEEe--CCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 140 KGQLTKMFFL--FPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 140 ~~s~d~i~~~--fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
.+.||.|+=. |..=.+.. ...+.+.+.++|+|||.+.+.|
T Consensus 114 ~g~fD~iyDr~~l~Alpp~~--------R~~Ya~~l~~ll~p~g~~lLi~ 155 (218)
T PF05724_consen 114 VGKFDLIYDRTFLCALPPEM--------RERYAQQLASLLKPGGRGLLIT 155 (218)
T ss_dssp HHSEEEEEECSSTTTS-GGG--------HHHHHHHHHHCEEEEEEEEEEE
T ss_pred cCCceEEEEecccccCCHHH--------HHHHHHHHHHHhCCCCcEEEEE
Confidence 2568999832 21111111 2369999999999999955544
No 177
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.70 E-value=1.3e-07 Score=86.11 Aligned_cols=120 Identities=12% Similarity=0.058 Sum_probs=88.2
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCC-Cccc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEK-GQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~-~s~d 144 (252)
+..||++-|=+|.+++..|... ...+++||+|..++++|++|+... ......+.|+++|+.+.|...-.. ..+|
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~LN----g~~~~~~~~i~~Dvf~~l~~~~~~g~~fD 292 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAELN----GLDGDRHRFIVGDVFKWLRKAERRGEKFD 292 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHhc----CCCccceeeehhhHHHHHHHHHhcCCccc
Confidence 5579999999999999999983 228999999999999999998653 112345899999998777544333 3899
Q ss_pred EEEEeCCCCccccccccccc--cCHHHHHHHHHhhcCCcEEEEEeCchH
Q 025492 145 KMFFLFPDPHFKEKNHRRRV--ISPHLLDEYAYVLGVGGIIYTITDVEE 191 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~--~~~~~l~~~~~~LkpgG~l~~~td~~~ 191 (252)
.|++..|.=--.++.. .+. -...++..+.++|+|||.++++|....
T Consensus 293 lIilDPPsF~r~k~~~-~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 293 LIILDPPSFARSKKQE-FSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred EEEECCcccccCcccc-hhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 9999765322111111 111 134688899999999999999987543
No 178
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=3.9e-07 Score=82.54 Aligned_cols=138 Identities=20% Similarity=0.323 Sum_probs=97.6
Q ss_pred CCceEEEEcCcccHHHHHHHHHCCC--CeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCC-
Q 025492 65 KKIQFADIGCGFGGLLISLSTLFPE--VLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKG- 141 (252)
Q Consensus 65 ~~~~vLDIGcG~G~~~~~lA~~~p~--~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~- 141 (252)
++.+|||+.++.|.=+.++|+..++ ..|+++|+++..+....+++..+ |..|+.+++.|+.. +......+
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~Rl------G~~nv~~~~~d~~~-~~~~~~~~~ 228 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRL------GVRNVIVVNKDARR-LAELLPGGE 228 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHc------CCCceEEEeccccc-ccccccccC
Confidence 3569999999999999999999654 56799999999999999888776 89999999999863 44333343
Q ss_pred cccEEEEeCC---------CCcccccccc-----ccccCHHHHHHHHHhhcCCcEEEEEe--CchHHHHHHHHHH-hcCC
Q 025492 142 QLTKMFFLFP---------DPHFKEKNHR-----RRVISPHLLDEYAYVLGVGGIIYTIT--DVEELGDWMRSCL-ENHP 204 (252)
Q Consensus 142 s~d~i~~~fp---------dP~~k~~h~k-----rr~~~~~~l~~~~~~LkpgG~l~~~t--d~~~~~~~~~~~~-~~~~ 204 (252)
.+|.|.+.-| +|-.+.+... ---+|..+|....++|||||.|+.+| -..+-.+...+.+ ..++
T Consensus 229 ~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~ 308 (355)
T COG0144 229 KFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHP 308 (355)
T ss_pred cCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhCC
Confidence 4999998755 2222111111 11256789999999999999999876 3334444444333 3444
Q ss_pred Ccccc
Q 025492 205 MFEAL 209 (252)
Q Consensus 205 ~~~~~ 209 (252)
.|+..
T Consensus 309 ~~~~~ 313 (355)
T COG0144 309 DFELE 313 (355)
T ss_pred Cceee
Confidence 44333
No 179
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.62 E-value=4.9e-08 Score=81.89 Aligned_cols=133 Identities=15% Similarity=0.121 Sum_probs=96.1
Q ss_pred cCCCCCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCC
Q 025492 61 VNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEK 140 (252)
Q Consensus 61 ~~~~~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~ 140 (252)
++.++..+|||.+.|-|.+++..+++. ...|+-||.++..++.|.-|--.. .-.-.+++++.+|+.+.+. .|++
T Consensus 130 V~~~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr----~l~~~~i~iilGD~~e~V~-~~~D 203 (287)
T COG2521 130 VKVKRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSR----ELFEIAIKIILGDAYEVVK-DFDD 203 (287)
T ss_pred eccccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCc----cccccccEEecccHHHHHh-cCCc
Confidence 334457799999999999999999993 238999999999988775432110 0012268999999997665 4889
Q ss_pred CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCch-------HHHHHHHHHHhcCC
Q 025492 141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE-------ELGDWMRSCLENHP 204 (252)
Q Consensus 141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~-------~~~~~~~~~~~~~~ 204 (252)
.+||.|+-..| - -.++. .+-+..|-++++|+|||||.++--+-++ ++...+.+.+...+
T Consensus 204 ~sfDaIiHDPP--R--fS~Ag-eLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vG 269 (287)
T COG2521 204 ESFDAIIHDPP--R--FSLAG-ELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVG 269 (287)
T ss_pred cccceEeeCCC--c--cchhh-hHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcC
Confidence 99999875332 1 22333 6778899999999999999998766542 45566666666554
No 180
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.60 E-value=3.9e-07 Score=82.92 Aligned_cols=106 Identities=17% Similarity=0.186 Sum_probs=84.2
Q ss_pred ceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 67 IQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
..|||+.||+|..++.++...+ ...++++|+++.+++.+++|+... +..|+.+++.|+...+... ...+|.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N------~~~~~~v~~~Da~~~l~~~--~~~fDv 117 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYN------SVENIEVPNEDAANVLRYR--NRKFHV 117 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHh------CCCcEEEEchhHHHHHHHh--CCCCCE
Confidence 4799999999999999999854 358999999999999999988654 5678999999998655421 356898
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE-eCchHH
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI-TDVEEL 192 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~-td~~~~ 192 (252)
|++ ||. .. ...|+..+.+.+++||.|+++ ||...+
T Consensus 118 Idl---DPf-Gs--------~~~fld~al~~~~~~glL~vTaTD~~~L 153 (374)
T TIGR00308 118 IDI---DPF-GT--------PAPFVDSAIQASAERGLLLVTATDTSAL 153 (374)
T ss_pred EEe---CCC-CC--------cHHHHHHHHHhcccCCEEEEEecccHHh
Confidence 887 553 11 126999999999999999886 675543
No 181
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.59 E-value=2.2e-07 Score=74.82 Aligned_cols=78 Identities=18% Similarity=0.307 Sum_probs=55.9
Q ss_pred eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCC-cccEEEEeCCcccccCccCCCCc-ccE
Q 025492 68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQ-YQNISVVRTNSMKYIPNYFEKGQ-LTK 145 (252)
Q Consensus 68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~-~~nv~~~~~da~~~l~~~~~~~s-~d~ 145 (252)
+|||+.||.|.-++++|+.+ ..|++||+++..++.|+.|+.-. | .+||.++++|+.+.+.. +.... +|.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vY------Gv~~~I~~i~gD~~~~~~~-~~~~~~~D~ 72 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVY------GVADNIDFICGDFFELLKR-LKSNKIFDV 72 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHT------T-GGGEEEEES-HHHHGGG-B------SE
T ss_pred EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHc------CCCCcEEEEeCCHHHHHhh-ccccccccE
Confidence 69999999999999999995 47999999999999999998654 4 56999999999875543 33233 688
Q ss_pred EEEeCCCCccc
Q 025492 146 MFFLFPDPHFK 156 (252)
Q Consensus 146 i~~~fpdP~~k 156 (252)
|++. .||-.
T Consensus 73 vFlS--PPWGG 81 (163)
T PF09445_consen 73 VFLS--PPWGG 81 (163)
T ss_dssp EEE-----BSS
T ss_pred EEEC--CCCCC
Confidence 8765 45643
No 182
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.59 E-value=1.2e-08 Score=85.24 Aligned_cols=99 Identities=16% Similarity=0.279 Sum_probs=66.9
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM 146 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i 146 (252)
..+||+|||+|..+..|-.+ ...++|||||.+|++.|.++ ..++ .+.++|+..+++ ...+..+|.|
T Consensus 127 ~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eK---------g~YD--~L~~Aea~~Fl~-~~~~er~DLi 192 (287)
T COG4976 127 RRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEK---------GLYD--TLYVAEAVLFLE-DLTQERFDLI 192 (287)
T ss_pred ceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhc---------cchH--HHHHHHHHHHhh-hccCCcccch
Confidence 48999999999999888877 44689999999999988764 1222 233455543332 2335567776
Q ss_pred EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
...=--|+... -..++..++..|+|||.|.|++
T Consensus 193 ~AaDVl~YlG~--------Le~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 193 VAADVLPYLGA--------LEGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred hhhhHHHhhcc--------hhhHHHHHHHhcCCCceEEEEe
Confidence 53211111110 1258888999999999999976
No 183
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.57 E-value=5.2e-07 Score=80.63 Aligned_cols=103 Identities=18% Similarity=0.257 Sum_probs=85.3
Q ss_pred CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc-EEEEeCCcccccCccCCCCcc
Q 025492 65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQN-ISVVRTNSMKYIPNYFEKGQL 143 (252)
Q Consensus 65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~~~~da~~~l~~~~~~~s~ 143 (252)
.+.+|||.=+|.|.|++.+|...... ++++|+++.+++..++|+... +..+ +..+++|+.+..+.. +.+
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~-V~A~diNP~A~~~L~eNi~LN------~v~~~v~~i~gD~rev~~~~---~~a 257 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPK-VYAIDINPDAVEYLKENIRLN------KVEGRVEPILGDAREVAPEL---GVA 257 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCce-EEEEecCHHHHHHHHHHHHhc------CccceeeEEeccHHHhhhcc---ccC
Confidence 36799999999999999999996444 999999999999999998664 5555 999999998654422 789
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV 189 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~ 189 (252)
|.|+++.|.-- ..|+....+.|++||.+++-+-.
T Consensus 258 DrIim~~p~~a------------~~fl~~A~~~~k~~g~iHyy~~~ 291 (341)
T COG2520 258 DRIIMGLPKSA------------HEFLPLALELLKDGGIIHYYEFV 291 (341)
T ss_pred CEEEeCCCCcc------------hhhHHHHHHHhhcCcEEEEEecc
Confidence 99999987532 24999999999999999986643
No 184
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.57 E-value=2.8e-07 Score=81.67 Aligned_cols=103 Identities=16% Similarity=0.208 Sum_probs=71.5
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc-EEEEeCCcccccCccCCCCccc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQN-ISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~~~~da~~~l~~~~~~~s~d 144 (252)
..+|||+|||+|.+++.-|+.. ...|+|||-|.-+ +.|.+.+.. +++.+ |.++++.+.+ + .+|...+|
T Consensus 61 dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~------N~~~~ii~vi~gkvEd-i--~LP~eKVD 129 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKD------NGLEDVITVIKGKVED-I--ELPVEKVD 129 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHh------cCccceEEEeecceEE-E--ecCcccee
Confidence 4599999999999999999997 5689999988765 677776654 46666 8999999875 4 36667888
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEE
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIY 184 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~ 184 (252)
.|+.-+---|- -...+ -..+|-.--+.|+|||.++
T Consensus 130 iIvSEWMGy~L---l~EsM--ldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 130 IIVSEWMGYFL---LYESM--LDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred EEeehhhhHHH---HHhhh--hhhhhhhhhhccCCCceEc
Confidence 88743211110 00000 1124444458899999874
No 185
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.56 E-value=7.4e-07 Score=80.69 Aligned_cols=112 Identities=14% Similarity=0.276 Sum_probs=75.7
Q ss_pred eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCcc----------
Q 025492 68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNY---------- 137 (252)
Q Consensus 68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~---------- 137 (252)
.+||+-||.|.+++.||.. ...|+|||+++.+++.|+.++.. +++.|+.|+.+++.+.....
T Consensus 199 ~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~------N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~ 270 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKL------NGIDNVEFIRGDAEDFAKALAKAREFNRLK 270 (352)
T ss_dssp EEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHH------TT--SEEEEE--SHHCCCHHCCS-GGTTGG
T ss_pred cEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHH------cCCCcceEEEeeccchhHHHHhhHHHHhhh
Confidence 6999999999999999999 45899999999999999998866 48999999999876432110
Q ss_pred ---CCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHH
Q 025492 138 ---FEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCL 200 (252)
Q Consensus 138 ---~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~ 200 (252)
+....+|.|++..| .+- ....+++.+. ++.=.+|+++|...++..+....
T Consensus 271 ~~~~~~~~~d~vilDPP---R~G-------~~~~~~~~~~---~~~~ivYvSCnP~tlaRDl~~L~ 323 (352)
T PF05958_consen 271 GIDLKSFKFDAVILDPP---RAG-------LDEKVIELIK---KLKRIVYVSCNPATLARDLKILK 323 (352)
T ss_dssp GS-GGCTTESEEEE------TT--------SCHHHHHHHH---HSSEEEEEES-HHHHHHHHHHHH
T ss_pred hhhhhhcCCCEEEEcCC---CCC-------chHHHHHHHh---cCCeEEEEECCHHHHHHHHHHHh
Confidence 11235788877543 221 2234666554 34679999999999988887643
No 186
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.55 E-value=2.4e-07 Score=75.54 Aligned_cols=111 Identities=15% Similarity=0.157 Sum_probs=68.0
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCccccc-CccCCCCccc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYI-PNYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l-~~~~~~~s~d 144 (252)
...|||+|||+|..++.+|...+...++..|..+ .+...+.++..... ....++.+...|..+.+ ...+....+|
T Consensus 46 ~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~---~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 46 GKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS---LLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT-----------EEEE--TTS-HHHHHHS-SSBS
T ss_pred CceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc---cccccccCcEEEecCcccccccccccCC
Confidence 4589999999999999999997778999999998 88888887754310 12456888887764322 2234456899
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD 188 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td 188 (252)
.|+.. |=.+... ..+.+++.+.++|+++|.+++...
T Consensus 122 ~Ilas--Dv~Y~~~------~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 122 VILAS--DVLYDEE------LFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEEE--S--S-GG------GHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEEe--cccchHH------HHHHHHHHHHHHhCCCCEEEEEeC
Confidence 98742 1111111 234799999999999999887664
No 187
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.54 E-value=4.1e-07 Score=79.77 Aligned_cols=118 Identities=14% Similarity=0.162 Sum_probs=81.0
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
+..|||+-|=+|.+++..|... ...+++||.|..++++|++|+... .-...+++|+..|+.+.+...-..+.+|.
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~lN----g~~~~~~~~~~~Dvf~~l~~~~~~~~fD~ 198 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAALN----GLDLDRHRFIQGDVFKFLKRLKKGGRFDL 198 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHHT----T-CCTCEEEEES-HHHHHHHHHHTT-EEE
T ss_pred CCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHc----CCCccceEEEecCHHHHHHHHhcCCCCCE
Confidence 4599999999999999877653 447999999999999999998653 11245899999999876653223578999
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCch
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE 190 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~ 190 (252)
|++..|. ..|.+..-.+ -...++..+.++|+|||.|+++|...
T Consensus 199 IIlDPPs-F~k~~~~~~~-~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 199 IILDPPS-FAKSKFDLER-DYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp EEE--SS-EESSTCEHHH-HHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred EEECCCC-CCCCHHHHHH-HHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 9998663 2222211111 23468888999999999999988763
No 188
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.54 E-value=1.2e-06 Score=86.22 Aligned_cols=120 Identities=16% Similarity=0.097 Sum_probs=80.9
Q ss_pred CceEEEEcCcccHHHHHHHHHC------------------------------------------CCCeEEEEecCHhHHH
Q 025492 66 KIQFADIGCGFGGLLISLSTLF------------------------------------------PEVLMIGMELRDKVTE 103 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~------------------------------------------p~~~~iGiDis~~~i~ 103 (252)
...++|.+||+|+++++.|... ....++|+|+++.+++
T Consensus 191 ~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~ 270 (702)
T PRK11783 191 GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQ 270 (702)
T ss_pred CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHH
Confidence 3589999999999999988741 1236899999999999
Q ss_pred HHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhh---cC
Q 025492 104 YVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVL---GV 179 (252)
Q Consensus 104 ~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~L---kp 179 (252)
.|+.|+... ++. .+.+.++|+.+ +......+++|.|+.|.| +-++-..+. ....+...+...| .+
T Consensus 271 ~A~~N~~~~------g~~~~i~~~~~D~~~-~~~~~~~~~~d~IvtNPP--Yg~r~~~~~--~l~~lY~~lg~~lk~~~~ 339 (702)
T PRK11783 271 AARKNARRA------GVAELITFEVKDVAD-LKNPLPKGPTGLVISNPP--YGERLGEEP--ALIALYSQLGRRLKQQFG 339 (702)
T ss_pred HHHHHHHHc------CCCcceEEEeCChhh-cccccccCCCCEEEECCC--CcCccCchH--HHHHHHHHHHHHHHHhCC
Confidence 999998764 554 48999999874 432233457999998854 322110000 0112333333333 49
Q ss_pred CcEEEEEeCchHHHHHH
Q 025492 180 GGIIYTITDVEELGDWM 196 (252)
Q Consensus 180 gG~l~~~td~~~~~~~~ 196 (252)
|+.+++.|.+..+...+
T Consensus 340 g~~~~llt~~~~l~~~~ 356 (702)
T PRK11783 340 GWNAALFSSSPELLSCL 356 (702)
T ss_pred CCeEEEEeCCHHHHHHh
Confidence 99999999887765544
No 189
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.50 E-value=5.6e-07 Score=74.13 Aligned_cols=110 Identities=17% Similarity=0.234 Sum_probs=78.8
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccC-CCCcc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYF-EKGQL 143 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~-~~~s~ 143 (252)
+..|||+-||+|.++++.+.+. ...++.||.++.++...++|+... +.. ++.++..|+...+.... ....+
T Consensus 43 g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l------~~~~~~~v~~~d~~~~l~~~~~~~~~f 115 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKL------GLEDKIRVIKGDAFKFLLKLAKKGEKF 115 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHH------T-GGGEEEEESSHHHHHHHHHHCTS-E
T ss_pred CCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHh------CCCcceeeeccCHHHHHHhhcccCCCc
Confidence 5689999999999999988885 458999999999999999999887 444 59999999876554321 35789
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHH--HhhcCCcEEEEEeCch
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYA--YVLGVGGIIYTITDVE 190 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~--~~LkpgG~l~~~td~~ 190 (252)
|.|++..| +..... ...+++.+. .+|+++|.+++.++..
T Consensus 116 DiIflDPP---Y~~~~~-----~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 116 DIIFLDPP---YAKGLY-----YEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp EEEEE--S---TTSCHH-----HHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred eEEEECCC---cccchH-----HHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 99988543 322210 135777776 7899999999988653
No 190
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.49 E-value=4e-07 Score=80.20 Aligned_cols=76 Identities=14% Similarity=0.256 Sum_probs=60.7
Q ss_pred CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCC--c
Q 025492 66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKG--Q 142 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~--s 142 (252)
+.++||.+||.|.++..+++..+ +..|+|+|+++.+++.|++++. . ..++.++++|..+ +...++++ +
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~------~--~~ri~~i~~~f~~-l~~~l~~~~~~ 90 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLK------P--FGRFTLVHGNFSN-LKEVLAEGLGK 90 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhc------c--CCcEEEEeCCHHH-HHHHHHcCCCc
Confidence 45899999999999999999986 6899999999999999886542 1 4689999999875 33334332 7
Q ss_pred ccEEEEeC
Q 025492 143 LTKMFFLF 150 (252)
Q Consensus 143 ~d~i~~~f 150 (252)
+|.|++.+
T Consensus 91 vDgIl~DL 98 (296)
T PRK00050 91 VDGILLDL 98 (296)
T ss_pred cCEEEECC
Confidence 99998653
No 191
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=5.4e-07 Score=83.33 Aligned_cols=118 Identities=14% Similarity=0.194 Sum_probs=85.4
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCC--Ccc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEK--GQL 143 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~--~s~ 143 (252)
...+||+.||+|.+++++|+. -..|+|||+++.+++.|..++.. +++.|..|+++-|.+.++..+.. ++=
T Consensus 384 ~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~------NgisNa~Fi~gqaE~~~~sl~~~~~~~~ 455 (534)
T KOG2187|consen 384 DKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQI------NGISNATFIVGQAEDLFPSLLTPCCDSE 455 (534)
T ss_pred CcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchh------cCccceeeeecchhhccchhcccCCCCC
Confidence 468999999999999999998 55799999999999999887644 69999999999877666544433 122
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHH
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCL 200 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~ 200 (252)
+.+.+. ||..+--|. .+++.+...=.+--.+|++......+..+.+..
T Consensus 456 ~~v~ii--DPpR~Glh~-------~~ik~l~~~~~~~rlvyvSCn~~t~ar~v~~lc 503 (534)
T KOG2187|consen 456 TLVAII--DPPRKGLHM-------KVIKALRAYKNPRRLVYVSCNPHTAARNVIDLC 503 (534)
T ss_pred ceEEEE--CCCcccccH-------HHHHHHHhccCccceEEEEcCHHHhhhhHHHhh
Confidence 322222 555444343 578777777668888888887655545444444
No 192
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=9e-07 Score=73.24 Aligned_cols=105 Identities=21% Similarity=0.210 Sum_probs=79.9
Q ss_pred CceEEEEcCcccHHHHHHHHH--CCCCeEEEEecCHhHHHHHHHHHHHHhh----cCCCCcccEEEEeCCcccccCccCC
Q 025492 66 KIQFADIGCGFGGLLISLSTL--FPEVLMIGMELRDKVTEYVKERILALRV----SNPGQYQNISVVRTNSMKYIPNYFE 139 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~--~p~~~~iGiDis~~~i~~a~~~~~~~~~----~~~~~~~nv~~~~~da~~~l~~~~~ 139 (252)
.-.+||||+|+|.++..+|.. .++.+.+|||.-++.++.+.+++...-. .....-.++.++.+|-.. . +-.
T Consensus 83 G~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~-g--~~e 159 (237)
T KOG1661|consen 83 GASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRK-G--YAE 159 (237)
T ss_pred CcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccc-c--CCc
Confidence 458999999999999999976 3455669999999999999998876421 111234578999999764 2 234
Q ss_pred CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 140 KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 140 ~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
...+|.|++--.++ ...+++...|++||.+++--
T Consensus 160 ~a~YDaIhvGAaa~--------------~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 160 QAPYDAIHVGAAAS--------------ELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred cCCcceEEEccCcc--------------ccHHHHHHhhccCCeEEEee
Confidence 67899999874333 37788899999999998854
No 193
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.46 E-value=3.3e-06 Score=69.22 Aligned_cols=111 Identities=18% Similarity=0.156 Sum_probs=81.0
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
+.++||+=+|+|.++++.+.+.. ..++.||.+..++...++|++.+ .-..++.++..|+...|...-..+.||.
T Consensus 44 g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l-----~~~~~~~~~~~da~~~L~~~~~~~~FDl 117 (187)
T COG0742 44 GARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKAL-----GLEGEARVLRNDALRALKQLGTREPFDL 117 (187)
T ss_pred CCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHh-----CCccceEEEeecHHHHHHhcCCCCcccE
Confidence 56999999999999999999963 47899999999999999998776 2246899999999865543322335999
Q ss_pred EEEeCCCCccccccccccccC-HHHHHH--HHHhhcCCcEEEEEeCch
Q 025492 146 MFFLFPDPHFKEKNHRRRVIS-PHLLDE--YAYVLGVGGIIYTITDVE 190 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~-~~~l~~--~~~~LkpgG~l~~~td~~ 190 (252)
||+..|-.+ .. +. ...+.. -..+|+|+|.+++.++..
T Consensus 118 VflDPPy~~---~l-----~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 118 VFLDPPYAK---GL-----LDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred EEeCCCCcc---ch-----hhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 998544331 11 11 111112 236799999999988764
No 194
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=1.6e-06 Score=74.77 Aligned_cols=73 Identities=26% Similarity=0.423 Sum_probs=57.8
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCC-ccc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKG-QLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~-s~d 144 (252)
...|||||+|.|.++..|+++ ...+++||+++.++...++.. ...+|+.++.+|+.. ++ ++.- ...
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~--------~~~~n~~vi~~DaLk-~d--~~~l~~~~ 97 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERF--------APYDNLTVINGDALK-FD--FPSLAQPY 97 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhc--------ccccceEEEeCchhc-Cc--chhhcCCC
Confidence 458999999999999999999 457999999999987766543 246799999999873 33 3321 567
Q ss_pred EEEEeCC
Q 025492 145 KMFFLFP 151 (252)
Q Consensus 145 ~i~~~fp 151 (252)
.|+.|.|
T Consensus 98 ~vVaNlP 104 (259)
T COG0030 98 KVVANLP 104 (259)
T ss_pred EEEEcCC
Confidence 8888875
No 195
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.39 E-value=2e-06 Score=76.29 Aligned_cols=120 Identities=18% Similarity=0.223 Sum_probs=75.9
Q ss_pred CceEEEEcCcccHHHHHHHHH-------CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccC
Q 025492 66 KIQFADIGCGFGGLLISLSTL-------FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYF 138 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~-------~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~ 138 (252)
...|+|.+||+|.+++++.+. .+..+++|+|+++.++..|.-++... .....+..+..+|... ....
T Consensus 47 ~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~----~~~~~~~~i~~~d~l~--~~~~ 120 (311)
T PF02384_consen 47 GDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLH----GIDNSNINIIQGDSLE--NDKF 120 (311)
T ss_dssp TEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHT----THHCBGCEEEES-TTT--SHSC
T ss_pred cceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhh----cccccccccccccccc--cccc
Confidence 458999999999999998874 36789999999999998887665321 1123345688888642 2222
Q ss_pred C-CCcccEEEEeCCCCcc--ccccc-----------cccccCHHHHHHHHHhhcCCcEEEEEeCchH
Q 025492 139 E-KGQLTKMFFLFPDPHF--KEKNH-----------RRRVISPHLLDEYAYVLGVGGIIYTITDVEE 191 (252)
Q Consensus 139 ~-~~s~d~i~~~fpdP~~--k~~h~-----------krr~~~~~~l~~~~~~LkpgG~l~~~td~~~ 191 (252)
. ...+|.|+.|.|---. ..... .+.-..-.|+..+.+.|++||++.+.....-
T Consensus 121 ~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~ 187 (311)
T PF02384_consen 121 IKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGF 187 (311)
T ss_dssp TST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHH
T ss_pred ccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchh
Confidence 2 5789999999764322 11110 0011123589999999999999888776543
No 196
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.38 E-value=2.1e-06 Score=72.03 Aligned_cols=104 Identities=16% Similarity=0.282 Sum_probs=82.3
Q ss_pred CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCC---CC
Q 025492 66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFE---KG 141 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~---~~ 141 (252)
..++||||.=+|..++..|...| +..++++|+++...+.+....+.. .--..|.++++++.+.|+..++ .+
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~a-----gv~~KI~~i~g~a~esLd~l~~~~~~~ 148 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLA-----GVDHKITFIEGPALESLDELLADGESG 148 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhc-----cccceeeeeecchhhhHHHHHhcCCCC
Confidence 44899999999999999999977 679999999999999887665443 2234699999999888776554 47
Q ss_pred cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025492 142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT 185 (252)
Q Consensus 142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~ 185 (252)
+||.+|+ |.| | .+ ...+.+++.++|++||+|++
T Consensus 149 tfDfaFv---Dad-K-----~n--Y~~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 149 TFDFAFV---DAD-K-----DN--YSNYYERLLRLLRVGGVIVV 181 (237)
T ss_pred ceeEEEE---ccc-h-----HH--HHHHHHHHHhhcccccEEEE
Confidence 8888887 444 1 21 22689999999999999987
No 197
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.38 E-value=3e-07 Score=84.97 Aligned_cols=98 Identities=18% Similarity=0.219 Sum_probs=65.9
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEe---cCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGME---LRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL 143 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiD---is~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~ 143 (252)
.++||||||.|.|+..|..+ +...+.+- ..+..++.|.+ .|++-+--+-+. ..|+ |++++|
T Consensus 119 R~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfale----------RGvpa~~~~~~s--~rLP--fp~~~f 182 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALE----------RGVPAMIGVLGS--QRLP--FPSNAF 182 (506)
T ss_pred EEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhh----------cCcchhhhhhcc--cccc--CCccch
Confidence 48999999999999999998 44443333 33344444432 245432222222 2455 889999
Q ss_pred cEEEEe-CCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025492 144 TKMFFL-FPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD 188 (252)
Q Consensus 144 d~i~~~-fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td 188 (252)
|.|++. .-.||..... -+|-++-|+|+|||.++++..
T Consensus 183 DmvHcsrc~i~W~~~~g--------~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 183 DMVHCSRCLIPWHPNDG--------FLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred hhhhcccccccchhccc--------ceeehhhhhhccCceEEecCC
Confidence 999863 4477865332 388899999999999998754
No 198
>PRK04148 hypothetical protein; Provisional
Probab=98.37 E-value=3.3e-06 Score=65.70 Aligned_cols=91 Identities=15% Similarity=0.208 Sum_probs=62.6
Q ss_pred ceEEEEcCcccH-HHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 67 IQFADIGCGFGG-LLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 67 ~~vLDIGcG~G~-~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
..+||||||.|. ++..|++. +..|+|+|+++.+++.|+.+ .+.++.+|+.+ ++.---..+|.
T Consensus 18 ~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~-------------~~~~v~dDlf~--p~~~~y~~a~l 80 (134)
T PRK04148 18 KKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL-------------GLNAFVDDLFN--PNLEIYKNAKL 80 (134)
T ss_pred CEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh-------------CCeEEECcCCC--CCHHHHhcCCE
Confidence 479999999996 88888876 67999999999988766542 26788888753 21111356899
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
|+..-|.|-. ++ .+..+++.+ |.-++|.+
T Consensus 81 iysirpp~el----------~~-~~~~la~~~--~~~~~i~~ 109 (134)
T PRK04148 81 IYSIRPPRDL----------QP-FILELAKKI--NVPLIIKP 109 (134)
T ss_pred EEEeCCCHHH----------HH-HHHHHHHHc--CCCEEEEc
Confidence 9988776652 22 333344433 66777765
No 199
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.36 E-value=2.6e-06 Score=81.10 Aligned_cols=80 Identities=19% Similarity=0.215 Sum_probs=54.6
Q ss_pred CceEEEEcCcccHHHHHHHHHCC--------CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCcc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFP--------EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNY 137 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p--------~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~ 137 (252)
...|||.|||+|.++++++...+ ..+++|+|+++.++..|..++... +...+.+...|........
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~------~~~~~~i~~~d~l~~~~~~ 105 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEF------ALLEINVINFNSLSYVLLN 105 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhc------CCCCceeeecccccccccc
Confidence 45899999999999999998754 257899999999999988777543 1112444555532111000
Q ss_pred C--CCCcccEEEEeCC
Q 025492 138 F--EKGQLTKMFFLFP 151 (252)
Q Consensus 138 ~--~~~s~d~i~~~fp 151 (252)
. ..+.+|.|+.|.|
T Consensus 106 ~~~~~~~fD~IIgNPP 121 (524)
T TIGR02987 106 IESYLDLFDIVITNPP 121 (524)
T ss_pred cccccCcccEEEeCCC
Confidence 1 1257999999865
No 200
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.35 E-value=3.9e-06 Score=74.80 Aligned_cols=106 Identities=10% Similarity=0.165 Sum_probs=71.4
Q ss_pred CceEEEEcCcccHHHHHHHHHC----CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEE--EeCCcccccCccCC
Q 025492 66 KIQFADIGCGFGGLLISLSTLF----PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISV--VRTNSMKYIPNYFE 139 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~----p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~--~~~da~~~l~~~~~ 139 (252)
...++|+|||+|.-+..|.+.. ....|++||||.++++.+..++.. ...++|.+ +.+|..+.+. +++
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~------~~~p~l~v~~l~gdy~~~l~-~l~ 149 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPL------GNFSHVRCAGLLGTYDDGLA-WLK 149 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhh------ccCCCeEEEEEEecHHHHHh-hcc
Confidence 3489999999999877665543 357899999999999888877642 24566666 7787654332 222
Q ss_pred C----CcccEEEE------eCCCCccccccccccccCHHHHHHHHH-hhcCCcEEEEEeCc
Q 025492 140 K----GQLTKMFF------LFPDPHFKEKNHRRRVISPHLLDEYAY-VLGVGGIIYTITDV 189 (252)
Q Consensus 140 ~----~s~d~i~~------~fpdP~~k~~h~krr~~~~~~l~~~~~-~LkpgG~l~~~td~ 189 (252)
. ..-..++. ||+.+- ...||+.+++ .|+|||.|.+-.|-
T Consensus 150 ~~~~~~~~r~~~flGSsiGNf~~~e-----------a~~fL~~~~~~~l~~~d~lLiG~D~ 199 (319)
T TIGR03439 150 RPENRSRPTTILWLGSSIGNFSRPE-----------AAAFLAGFLATALSPSDSFLIGLDG 199 (319)
T ss_pred cccccCCccEEEEeCccccCCCHHH-----------HHHHHHHHHHhhCCCCCEEEEecCC
Confidence 1 11222221 222211 2369999999 99999999997774
No 201
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=1.7e-06 Score=67.71 Aligned_cols=95 Identities=17% Similarity=0.262 Sum_probs=66.6
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
+..++|+|||.|.+..+.+- .....++|+||++++++.+..|..+.+ + ++.++++|+.+ ..+..+.+|.
T Consensus 49 gkkl~DLgcgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNaeEfE------v-qidlLqcdild---le~~~g~fDt 117 (185)
T KOG3420|consen 49 GKKLKDLGCGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNAEEFE------V-QIDLLQCDILD---LELKGGIFDT 117 (185)
T ss_pred CcchhhhcCchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhchHHhh------h-hhheeeeeccc---hhccCCeEee
Confidence 55799999999988833332 234579999999999999998887652 2 46899999753 2345689999
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhh
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVL 177 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~L 177 (252)
.++|.|..- |.+|+ ..+|+....++.
T Consensus 118 aviNppFGT-k~~~a-----Dm~fv~~al~~~ 143 (185)
T KOG3420|consen 118 AVINPPFGT-KKKGA-----DMEFVSAALKVA 143 (185)
T ss_pred EEecCCCCc-ccccc-----cHHHHHHHHHHH
Confidence 999877654 22333 345555554444
No 202
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.34 E-value=3.6e-06 Score=71.63 Aligned_cols=96 Identities=13% Similarity=0.059 Sum_probs=59.1
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...+||||||+|.++..+++. +...++|||+++.|+... +....+....+..|++ ..+..+ +. ..-..+|.
T Consensus 76 ~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~---l~~~~~v~~~~~~ni~--~~~~~~-~~--~d~~~~Dv 146 (228)
T TIGR00478 76 NKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEK---LRQDERVKVLERTNIR--YVTPAD-IF--PDFATFDV 146 (228)
T ss_pred CCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHH---HhcCCCeeEeecCCcc--cCCHhH-cC--CCceeeeE
Confidence 458999999999999999997 346899999999887541 1110000011333444 122221 11 11236676
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
+++... -.+..+...|++ |.+++..
T Consensus 147 sfiS~~----------------~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 147 SFISLI----------------SILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred EEeehH----------------hHHHHHHHHhCc-CeEEEEc
Confidence 665431 278889999999 7766543
No 203
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.32 E-value=9.1e-06 Score=70.66 Aligned_cols=147 Identities=17% Similarity=0.197 Sum_probs=101.7
Q ss_pred ceEEEEcCcccHHHHHHHHHCCC--CeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccE-EEEeCCcccc--cCccCCC-
Q 025492 67 IQFADIGCGFGGLLISLSTLFPE--VLMIGMELRDKVTEYVKERILALRVSNPGQYQNI-SVVRTNSMKY--IPNYFEK- 140 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~--~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv-~~~~~da~~~--l~~~~~~- 140 (252)
-.||||.||.|.+.+.....+|. ..+.-.|.|+..++..++.+.+ .++.++ +|.++||.+. +...-+.
T Consensus 137 vrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~------~gL~~i~~f~~~dAfd~~~l~~l~p~P 210 (311)
T PF12147_consen 137 VRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAE------RGLEDIARFEQGDAFDRDSLAALDPAP 210 (311)
T ss_pred eEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHH------cCCccceEEEecCCCCHhHhhccCCCC
Confidence 48999999999999999999886 6899999999999998887765 488887 9999998642 1111111
Q ss_pred --CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe-CchHHHHHHHHHHhcCCC-ccccccccccc
Q 025492 141 --GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT-DVEELGDWMRSCLENHPM-FEALTKEELEA 216 (252)
Q Consensus 141 --~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t-d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 216 (252)
..++.++=+|||--. -...++-++..|.|||.++.+- +|....+.+...+.+|.. -.++
T Consensus 211 ~l~iVsGL~ElF~Dn~l----------v~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~Wv------- 273 (311)
T PF12147_consen 211 TLAIVSGLYELFPDNDL----------VRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWV------- 273 (311)
T ss_pred CEEEEecchhhCCcHHH----------HHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceE-------
Confidence 224444557887431 1246888999999999997753 466777777777766521 1112
Q ss_pred CccccCCCCCCHHHHHHHHcCCCe
Q 025492 217 DPVVKLLSSATEEGQKVARNGGQT 240 (252)
Q Consensus 217 ~p~~~~~~~~t~~e~~~~~~G~~i 240 (252)
+. -++.-+..+.+..+|+..
T Consensus 274 ---MR-rRsq~EmD~Lv~~aGF~K 293 (311)
T PF12147_consen 274 ---MR-RRSQAEMDQLVEAAGFEK 293 (311)
T ss_pred ---EE-ecCHHHHHHHHHHcCCch
Confidence 00 023335666777777754
No 204
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.32 E-value=2e-06 Score=75.55 Aligned_cols=115 Identities=19% Similarity=0.243 Sum_probs=87.6
Q ss_pred CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
...|||+++|.|.=+..+|+... ...+++.|++...+.....++..+ +..|+.++..|+....+ ......+|
T Consensus 86 ~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~------g~~~v~~~~~D~~~~~~-~~~~~~fd 158 (283)
T PF01189_consen 86 GERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRL------GVFNVIVINADARKLDP-KKPESKFD 158 (283)
T ss_dssp TSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT------T-SSEEEEESHHHHHHH-HHHTTTEE
T ss_pred cccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhc------CCceEEEEeeccccccc-cccccccc
Confidence 55899999999999999999966 678999999999999888887665 89999999999875322 23344699
Q ss_pred EEEEeCCCCccc--ccc--ccc----------cccCHHHHHHHHHhh----cCCcEEEEEe
Q 025492 145 KMFFLFPDPHFK--EKN--HRR----------RVISPHLLDEYAYVL----GVGGIIYTIT 187 (252)
Q Consensus 145 ~i~~~fpdP~~k--~~h--~kr----------r~~~~~~l~~~~~~L----kpgG~l~~~t 187 (252)
.|.+.-|.-... .++ .+. --++..+|+.+.+.| ||||+++.+|
T Consensus 159 ~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT 219 (283)
T PF01189_consen 159 RVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST 219 (283)
T ss_dssp EEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred hhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence 999987743321 001 011 124678999999999 9999999987
No 205
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.32 E-value=2.8e-06 Score=79.11 Aligned_cols=103 Identities=17% Similarity=0.173 Sum_probs=66.8
Q ss_pred CceEEEEcCcccHHHHHHHHH----CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCC
Q 025492 66 KIQFADIGCGFGGLLISLSTL----FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKG 141 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~----~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~ 141 (252)
..+|||||||+|.++...+++ .....|++||.++.++...+..+... ..-++|.++++|+.+ +. .+.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n-----~w~~~V~vi~~d~r~-v~---lpe 257 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNAN-----GWGDKVTVIHGDMRE-VE---LPE 257 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHT-----TTTTTEEEEES-TTT-SC---HSS
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhc-----CCCCeEEEEeCcccC-CC---CCC
Confidence 458999999999998766555 33578999999998876665554432 223679999999874 43 245
Q ss_pred cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEE
Q 025492 142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGII 183 (252)
Q Consensus 142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l 183 (252)
.+|.|+.=.-.-.- -.-..++.|....+.|||||.+
T Consensus 258 kvDIIVSElLGsfg------~nEl~pE~Lda~~rfLkp~Gi~ 293 (448)
T PF05185_consen 258 KVDIIVSELLGSFG------DNELSPECLDAADRFLKPDGIM 293 (448)
T ss_dssp -EEEEEE---BTTB------TTTSHHHHHHHGGGGEEEEEEE
T ss_pred ceeEEEEeccCCcc------ccccCHHHHHHHHhhcCCCCEE
Confidence 78888752111000 0012356788889999999876
No 206
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.31 E-value=2.2e-06 Score=67.04 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=50.2
Q ss_pred eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcc
Q 025492 68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSM 131 (252)
Q Consensus 68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~ 131 (252)
++||||||.|.++..+++..|...++++|.++.+++.+++++... +.+|+.++...+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n------~~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLN------NLPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHc------CCCcEEEEEeeee
Confidence 489999999999999999998889999999999999988887553 5678888887654
No 207
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.28 E-value=1e-05 Score=73.06 Aligned_cols=111 Identities=14% Similarity=0.133 Sum_probs=81.2
Q ss_pred eEEEEcCcccHHHHHHHHHCCC--------------------------------C-------eEEEEecCHhHHHHHHHH
Q 025492 68 QFADIGCGFGGLLISLSTLFPE--------------------------------V-------LMIGMELRDKVTEYVKER 108 (252)
Q Consensus 68 ~vLDIGcG~G~~~~~lA~~~p~--------------------------------~-------~~iGiDis~~~i~~a~~~ 108 (252)
.++|-=||+|++++..|...++ . .++|+|+++.+++.|+.|
T Consensus 194 pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~N 273 (381)
T COG0116 194 PLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKAN 273 (381)
T ss_pred ccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHH
Confidence 5899999999999999998653 1 278999999999999999
Q ss_pred HHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEEEeCCCCccccccccccc---cCHHHHHHHHHhhcCCcEEEE
Q 025492 109 ILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRV---ISPHLLDEYAYVLGVGGIIYT 185 (252)
Q Consensus 109 ~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~---~~~~~l~~~~~~LkpgG~l~~ 185 (252)
+..+ +-.+-|.|.++|+.. +...+ .+++.|+.|.| + -.|-....+ +...|.+.+.+.++--+..+|
T Consensus 274 A~~A-----Gv~d~I~f~~~d~~~-l~~~~--~~~gvvI~NPP--Y-GeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~ 342 (381)
T COG0116 274 ARAA-----GVGDLIEFKQADATD-LKEPL--EEYGVVISNPP--Y-GERLGSEALVAKLYREFGRTLKRLLAGWSRYVF 342 (381)
T ss_pred HHhc-----CCCceEEEEEcchhh-CCCCC--CcCCEEEeCCC--c-chhcCChhhHHHHHHHHHHHHHHHhcCCceEEE
Confidence 8765 233569999999974 55433 68899998764 2 222221111 235566677777777788888
Q ss_pred EeCc
Q 025492 186 ITDV 189 (252)
Q Consensus 186 ~td~ 189 (252)
+|+-
T Consensus 343 tt~e 346 (381)
T COG0116 343 TTSE 346 (381)
T ss_pred EccH
Confidence 8854
No 208
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.27 E-value=1.8e-06 Score=72.30 Aligned_cols=107 Identities=16% Similarity=0.220 Sum_probs=60.7
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhc---CCCCcccEEEEeCCcccc--cCccCCC
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVS---NPGQYQNISVVRTNSMKY--IPNYFEK 140 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~---~~~~~~nv~~~~~da~~~--l~~~~~~ 140 (252)
..+++|||||.|...+..|...+-...+|||+.+...+.|......++.. -......+.+.++|..+. ....+
T Consensus 43 ~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~-- 120 (205)
T PF08123_consen 43 DDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIW-- 120 (205)
T ss_dssp T-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHG--
T ss_pred CCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhh--
Confidence 56999999999999999998876556999999999888887655444321 112345788888886421 11111
Q ss_pred CcccEEEEe---CCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 141 GQLTKMFFL---FPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 141 ~s~d~i~~~---fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
...|.|++| |.++-. .-|.+....||+|-+|+ ++
T Consensus 121 s~AdvVf~Nn~~F~~~l~------------~~L~~~~~~lk~G~~II-s~ 157 (205)
T PF08123_consen 121 SDADVVFVNNTCFDPDLN------------LALAELLLELKPGARII-ST 157 (205)
T ss_dssp HC-SEEEE--TTT-HHHH------------HHHHHHHTTS-TT-EEE-ES
T ss_pred cCCCEEEEeccccCHHHH------------HHHHHHHhcCCCCCEEE-EC
Confidence 245788886 221110 24455556777777764 44
No 209
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.25 E-value=2.1e-06 Score=71.33 Aligned_cols=104 Identities=19% Similarity=0.242 Sum_probs=59.0
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
.-+|-|+|||.+.++..+. ....|...|+-.. |=.++.+|+. .+| ++++++|.
T Consensus 73 ~~viaD~GCGdA~la~~~~---~~~~V~SfDLva~---------------------n~~Vtacdia-~vP--L~~~svDv 125 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVP---NKHKVHSFDLVAP---------------------NPRVTACDIA-NVP--LEDESVDV 125 (219)
T ss_dssp TS-EEEES-TT-HHHHH-----S---EEEEESS-S---------------------STTEEES-TT-S-S----TT-EEE
T ss_pred CEEEEECCCchHHHHHhcc---cCceEEEeeccCC---------------------CCCEEEecCc-cCc--CCCCceeE
Confidence 3489999999997664432 1347899997431 2236678885 576 78999999
Q ss_pred EEEeCC---CCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchH--HHHHHHHHHhcCCCcccc
Q 025492 146 MFFLFP---DPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEE--LGDWMRSCLENHPMFEAL 209 (252)
Q Consensus 146 i~~~fp---dP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~--~~~~~~~~~~~~~~~~~~ 209 (252)
++...+ .-|. .|+.+..|+|||||.+.|+--... -.....+.+...+ |...
T Consensus 126 ~VfcLSLMGTn~~------------~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~G-F~~~ 181 (219)
T PF05148_consen 126 AVFCLSLMGTNWP------------DFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLG-FKLK 181 (219)
T ss_dssp EEEES---SS-HH------------HHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTT-EEEE
T ss_pred EEEEhhhhCCCcH------------HHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCC-CeEE
Confidence 886542 4453 699999999999999999742211 1233344455443 5444
No 210
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.23 E-value=7.2e-06 Score=68.25 Aligned_cols=104 Identities=10% Similarity=0.153 Sum_probs=76.7
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
+.+||+||+|.|.....+.++.|...+ -||..+..++.-+.. ....-.||.++.+-..+.++ .++++.||.
T Consensus 102 ggrvLnVGFGMgIidT~iQe~~p~~H~-IiE~hp~V~krmr~~-------gw~ek~nViil~g~WeDvl~-~L~d~~FDG 172 (271)
T KOG1709|consen 102 GGRVLNVGFGMGIIDTFIQEAPPDEHW-IIEAHPDVLKRMRDW-------GWREKENVIILEGRWEDVLN-TLPDKHFDG 172 (271)
T ss_pred CceEEEeccchHHHHHHHhhcCCcceE-EEecCHHHHHHHHhc-------ccccccceEEEecchHhhhc-cccccCcce
Confidence 569999999999999999888887655 589999876544322 23456799999998876565 578899999
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
|+..-=.|....- ..|.+.+.++|||+|++-+.
T Consensus 173 I~yDTy~e~yEdl--------~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 173 IYYDTYSELYEDL--------RHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred eEeechhhHHHHH--------HHHHHHHhhhcCCCceEEEe
Confidence 9874222222111 14788899999999999774
No 211
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.19 E-value=1e-05 Score=69.38 Aligned_cols=93 Identities=16% Similarity=0.155 Sum_probs=64.8
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...+||||.|.|+.+..+|..+. .+.+.|.|+.|....++ .| ..++..|- +.+ .+..+|.
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~----------kg---~~vl~~~~---w~~--~~~~fDv 154 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSK----------KG---FTVLDIDD---WQQ--TDFKFDV 154 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHh----------CC---CeEEehhh---hhc--cCCceEE
Confidence 34799999999999999999976 48999999999643221 23 34444432 222 1457898
Q ss_pred EEE-eCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 146 MFF-LFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 146 i~~-~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
|.+ |.-|-.. + -..+|+.+.+.|+|+|+++++.
T Consensus 155 IscLNvLDRc~-----~----P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 155 ISCLNVLDRCD-----R----PLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred EeehhhhhccC-----C----HHHHHHHHHHHhCCCCEEEEEE
Confidence 875 3332211 1 1159999999999999999865
No 212
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.19 E-value=9.7e-06 Score=68.14 Aligned_cols=96 Identities=22% Similarity=0.241 Sum_probs=75.9
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCc-ccE
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQ-LTK 145 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s-~d~ 145 (252)
..++|||+|.|-=++-+|-.+|+.+|+-+|...+.+.+.+.-..++ +++|+.++++.+.+ +.. ... +|.
T Consensus 69 ~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL------~L~nv~i~~~RaE~-~~~---~~~~~D~ 138 (215)
T COG0357 69 KRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKEL------GLENVEIVHGRAEE-FGQ---EKKQYDV 138 (215)
T ss_pred CEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHh------CCCCeEEehhhHhh-ccc---ccccCcE
Confidence 5899999999999999999999999999999999888877766665 89999999999975 332 112 888
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEE
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIY 184 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~ 184 (252)
|..---.+. ..+++-+...||+||.+.
T Consensus 139 vtsRAva~L------------~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 139 VTSRAVASL------------NVLLELCLPLLKVGGGFL 165 (215)
T ss_pred EEeehccch------------HHHHHHHHHhcccCCcch
Confidence 875321111 248888889999988864
No 213
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.15 E-value=4.6e-05 Score=57.78 Aligned_cols=103 Identities=22% Similarity=0.339 Sum_probs=67.3
Q ss_pred EEEEcCcccHHHHHHHHHCCC-CeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccc-cCccCCC-CcccE
Q 025492 69 FADIGCGFGGLLISLSTLFPE-VLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKY-IPNYFEK-GQLTK 145 (252)
Q Consensus 69 vLDIGcG~G~~~~~lA~~~p~-~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~-l~~~~~~-~s~d~ 145 (252)
++|+|||.|... .++...+. ..++|+|+++.++..+...... ....++.++..|.... ++ +.. ..+|.
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~--~~~~~~~d~ 122 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG------AGLGLVDFVVADALGGVLP--FEDSASFDL 122 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh------cCCCceEEEEeccccCCCC--CCCCCceeE
Confidence 999999999987 44444433 4789999999988763322110 1111167888886531 22 444 47888
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV 189 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~ 189 (252)
+ ......+... ....+.++.+.|+|+|.+.+....
T Consensus 123 ~-~~~~~~~~~~--------~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 123 V-ISLLVLHLLP--------PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred E-eeeeehhcCC--------HHHHHHHHHHhcCCCcEEEEEecc
Confidence 8 4433322110 236999999999999999997765
No 214
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.14 E-value=7.6e-06 Score=69.85 Aligned_cols=81 Identities=21% Similarity=0.357 Sum_probs=59.9
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
+.+|-|+|||-+.++. .. ...|+.+|+-+ .|=+++.+|+. .++ ++++++|.
T Consensus 181 ~~vIaD~GCGEakiA~----~~-~~kV~SfDL~a---------------------~~~~V~~cDm~-~vP--l~d~svDv 231 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIAS----SE-RHKVHSFDLVA---------------------VNERVIACDMR-NVP--LEDESVDV 231 (325)
T ss_pred ceEEEecccchhhhhh----cc-ccceeeeeeec---------------------CCCceeecccc-CCc--CccCcccE
Confidence 4589999999995544 32 23688888632 24567888987 466 77999998
Q ss_pred EEEeCC---CCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 146 MFFLFP---DPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 146 i~~~fp---dP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
+++..+ .-| .+|+.++.|+|++||.++|+-
T Consensus 232 aV~CLSLMgtn~------------~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 232 AVFCLSLMGTNL------------ADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred EEeeHhhhcccH------------HHHHHHHHHHhccCceEEEEe
Confidence 876432 222 269999999999999999974
No 215
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.10 E-value=6.6e-06 Score=69.14 Aligned_cols=102 Identities=13% Similarity=0.160 Sum_probs=76.7
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
.|.++|||||-|.....+-... -..+|-+|.|..|++.++.. +..++. +....+|- +.|+ |.++++|.
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~-------qdp~i~-~~~~v~DE-E~Ld--f~ens~DL 140 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDA-------QDPSIE-TSYFVGDE-EFLD--FKENSVDL 140 (325)
T ss_pred CcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhcc-------CCCceE-EEEEecch-hccc--ccccchhh
Confidence 5789999999999999888886 44789999999999876531 122333 44445664 4676 88999999
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
|+....-.|... -+..+.++...|||+|.|+-..
T Consensus 141 iisSlslHW~Nd--------LPg~m~~ck~~lKPDg~Fiasm 174 (325)
T KOG2940|consen 141 IISSLSLHWTND--------LPGSMIQCKLALKPDGLFIASM 174 (325)
T ss_pred hhhhhhhhhhcc--------CchHHHHHHHhcCCCccchhHH
Confidence 987777667532 2468889999999999987643
No 216
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.09 E-value=6.5e-06 Score=67.30 Aligned_cols=105 Identities=15% Similarity=0.128 Sum_probs=65.0
Q ss_pred CceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCccc-----ccCccCC
Q 025492 66 KIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMK-----YIPNYFE 139 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~-----~l~~~~~ 139 (252)
...+||+||+.|.++..++++. +...++|||+.+. ...+++.++++|... .+...+.
T Consensus 24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------------~~~~~~~~i~~d~~~~~~~~~i~~~~~ 86 (181)
T PF01728_consen 24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------------DPLQNVSFIQGDITNPENIKDIRKLLP 86 (181)
T ss_dssp TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------------GS-TTEEBTTGGGEEEEHSHHGGGSHG
T ss_pred ccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------------ccccceeeeecccchhhHHHhhhhhcc
Confidence 4699999999999999999996 6789999999764 134567777777643 1233333
Q ss_pred C--CcccEEEEeCCCCccccc---cc-cccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025492 140 K--GQLTKMFFLFPDPHFKEK---NH-RRRVISPHLLDEYAYVLGVGGIIYTITD 188 (252)
Q Consensus 140 ~--~s~d~i~~~fpdP~~k~~---h~-krr~~~~~~l~~~~~~LkpgG~l~~~td 188 (252)
. ..+|.|......+....+ +. .-++ ....+..+...|+|||.+++.+-
T Consensus 87 ~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l-~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 87 ESGEKFDLVLSDMAPNVSGDRNIDEFISIRL-ILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp TTTCSESEEEE-------SSHHSSHHHHHHH-HHHHHHHHHHHHCTTEEEEEEES
T ss_pred ccccCcceeccccccCCCCchhhHHHHHHHH-HHHHHHHHHhhhcCCCEEEEEec
Confidence 2 689999876522221110 11 1111 12344466688999999888763
No 217
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.03 E-value=7.8e-05 Score=66.68 Aligned_cols=132 Identities=16% Similarity=0.207 Sum_probs=100.5
Q ss_pred CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCC--cccEEEEeCCcccccCccCCCCc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQ--YQNISVVRTNSMKYIPNYFEKGQ 142 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~--~~nv~~~~~da~~~l~~~~~~~s 142 (252)
...||-+|-|.|.-+.++.+. | -.+++-||++|+|++.++++. .+|..+.+. -++++++..||...+.. ..+.
T Consensus 290 a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~-vlr~~N~~sf~dpRv~Vv~dDAf~wlr~--a~~~ 365 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHAT-VLRALNQGSFSDPRVTVVNDDAFQWLRT--AADM 365 (508)
T ss_pred cceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhh-HhhhhccCCccCCeeEEEeccHHHHHHh--hccc
Confidence 568999999999877777654 6 568999999999999988542 334333333 45799999999865542 2568
Q ss_pred ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc----hHHHHHHHHHHhcCC
Q 025492 143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV----EELGDWMRSCLENHP 204 (252)
Q Consensus 143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~----~~~~~~~~~~~~~~~ 204 (252)
+|.|++.+|||-- -.-.|+-+.+|-..+.+.|+++|.++++.-+ ++.+..+...+++.+
T Consensus 366 fD~vIVDl~DP~t---ps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG 428 (508)
T COG4262 366 FDVVIVDLPDPST---PSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAG 428 (508)
T ss_pred ccEEEEeCCCCCC---cchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCc
Confidence 9999999999963 2345777889999999999999999998643 355666677777664
No 218
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.03 E-value=3.2e-05 Score=68.41 Aligned_cols=100 Identities=15% Similarity=0.253 Sum_probs=68.8
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
..+|||+|||+|.++...|+.. ...+++||-|. |.+.|+..+... .-.++|.++.+-+.+ +. + +..+|.
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~-MAqyA~~Lv~~N-----~~~~rItVI~GKiEd-ie--L-PEk~Dv 246 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASE-MAQYARKLVASN-----NLADRITVIPGKIED-IE--L-PEKVDV 246 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhC-cceEEEEehhH-HHHHHHHHHhcC-----CccceEEEccCcccc-cc--C-chhccE
Confidence 4599999999999999888885 45799999764 677887665432 334678999988764 43 3 456777
Q ss_pred EEEeCCCCccccccccccccCHHHHHHH---HHhhcCCcEEEE
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEY---AYVLGVGGIIYT 185 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~---~~~LkpgG~l~~ 185 (252)
|+. .|. .-.++++..|+.+ .+.|||.|..+=
T Consensus 247 iIS---EPM------G~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 247 IIS---EPM------GYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred EEe---ccc------hhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 664 332 1234555565544 489999987643
No 219
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.02 E-value=1.8e-06 Score=64.34 Aligned_cols=100 Identities=17% Similarity=0.197 Sum_probs=42.5
Q ss_pred EEEcCcccHHHHHHHHHCCCC---eEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025492 70 ADIGCGFGGLLISLSTLFPEV---LMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM 146 (252)
Q Consensus 70 LDIGcG~G~~~~~lA~~~p~~---~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i 146 (252)
|||||..|..++.+++..+.. .++++|..+. .+.+++.+++. .-..++.+++++..+.++. ++...+|.|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~-----~~~~~~~~~~g~s~~~l~~-~~~~~~dli 73 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKA-----GLSDRVEFIQGDSPDFLPS-LPDGPIDLI 73 (106)
T ss_dssp --------------------------EEEESS-------------G-----GG-BTEEEEES-THHHHHH-HHH--EEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhc-----CCCCeEEEEEcCcHHHHHH-cCCCCEEEE
Confidence 799999999999999876543 6899999985 22222222221 1235799999999876653 335789999
Q ss_pred EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025492 147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT 185 (252)
Q Consensus 147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~ 185 (252)
++.-.-... .....++.+.+.|+|||.+++
T Consensus 74 ~iDg~H~~~---------~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 74 FIDGDHSYE---------AVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp EEES---HH---------HHHHHHHHHGGGEEEEEEEEE
T ss_pred EECCCCCHH---------HHHHHHHHHHHHcCCCeEEEE
Confidence 986421110 012477888899999999887
No 220
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.99 E-value=2.6e-05 Score=67.05 Aligned_cols=75 Identities=13% Similarity=0.244 Sum_probs=56.8
Q ss_pred CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
+..+|||||-|+|.++..|.+. +..|+++|+++.|+....++.+.. .....++++.+|... .+ + --+|
T Consensus 58 ~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gt-----p~~~kLqV~~gD~lK-~d--~--P~fd 125 (315)
T KOG0820|consen 58 PTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGT-----PKSGKLQVLHGDFLK-TD--L--PRFD 125 (315)
T ss_pred CCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCC-----CccceeeEEeccccc-CC--C--cccc
Confidence 3569999999999999999999 779999999999998877765321 223469999999763 33 1 2456
Q ss_pred EEEEeCC
Q 025492 145 KMFFLFP 151 (252)
Q Consensus 145 ~i~~~fp 151 (252)
.++.|.|
T Consensus 126 ~cVsNlP 132 (315)
T KOG0820|consen 126 GCVSNLP 132 (315)
T ss_pred eeeccCC
Confidence 6666544
No 221
>PRK00536 speE spermidine synthase; Provisional
Probab=97.97 E-value=0.00014 Score=63.04 Aligned_cols=113 Identities=8% Similarity=-0.001 Sum_probs=81.1
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM 146 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i 146 (252)
..||=||-|.|..+.++.+. |. +++-|||++.+++.+++-+..... ...-+++.++. . ... -..+++|.|
T Consensus 74 k~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~--~~~DpRv~l~~-~---~~~--~~~~~fDVI 143 (262)
T PRK00536 74 KEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHE--VKNNKNFTHAK-Q---LLD--LDIKKYDLI 143 (262)
T ss_pred CeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHH--hhcCCCEEEee-h---hhh--ccCCcCCEE
Confidence 47999999999999999988 44 899999999999999886554321 12445677764 1 111 124689999
Q ss_pred EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCch----HHHHHHHHHHhc
Q 025492 147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE----ELGDWMRSCLEN 202 (252)
Q Consensus 147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~----~~~~~~~~~~~~ 202 (252)
++.-.++ +.|.+.+.+.|+|||.++.++-+. +.+..+...+.+
T Consensus 144 IvDs~~~-------------~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~ 190 (262)
T PRK00536 144 ICLQEPD-------------IHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGD 190 (262)
T ss_pred EEcCCCC-------------hHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHh
Confidence 9873222 369999999999999999987554 344445555543
No 222
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.95 E-value=8.6e-05 Score=59.59 Aligned_cols=104 Identities=13% Similarity=0.248 Sum_probs=75.0
Q ss_pred CceEEEEcCcccHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCcc---CCCC
Q 025492 66 KIQFADIGCGFGGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNY---FEKG 141 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~---~~~~ 141 (252)
+--|||+|.|+|-++-++..+ .++..+++||.|++.+....+ ..+.++++.+|+.. ++.. +...
T Consensus 49 glpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~-----------~~p~~~ii~gda~~-l~~~l~e~~gq 116 (194)
T COG3963 49 GLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQ-----------LYPGVNIINGDAFD-LRTTLGEHKGQ 116 (194)
T ss_pred CCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHH-----------hCCCccccccchhh-HHHHHhhcCCC
Confidence 446999999999999998887 567789999999997654432 34567799999874 4422 3456
Q ss_pred cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
.+|.|+...|---+-- + ..-.+|+.+...|.+||.++.-|
T Consensus 117 ~~D~viS~lPll~~P~--~----~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 117 FFDSVISGLPLLNFPM--H----RRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred eeeeEEeccccccCcH--H----HHHHHHHHHHHhcCCCCeEEEEE
Confidence 7898886544211100 0 12369999999999999998766
No 223
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.91 E-value=3.3e-05 Score=60.76 Aligned_cols=63 Identities=22% Similarity=0.380 Sum_probs=48.6
Q ss_pred CceEEEEcCcccHHHHHHHHH----CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcc
Q 025492 66 KIQFADIGCGFGGLLISLSTL----FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSM 131 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~----~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~ 131 (252)
...|+|+|||.|.++..+|.. .++..++|||.++..++.+..+..... .....++.+..++..
T Consensus 26 ~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~ 92 (141)
T PF13679_consen 26 CITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG---SDLEKRLSFIQGDIA 92 (141)
T ss_pred CCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc---chhhccchhhccchh
Confidence 458999999999999999992 278899999999999998888766541 111256777776654
No 224
>PRK10742 putative methyltransferase; Provisional
Probab=97.89 E-value=0.00024 Score=60.93 Aligned_cols=88 Identities=10% Similarity=0.127 Sum_probs=67.9
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCC--c-ccEEEEeCCcccccCccCCCCc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQ--Y-QNISVVRTNSMKYIPNYFEKGQ 142 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~--~-~nv~~~~~da~~~l~~~~~~~s 142 (252)
.|.|||.=+|.|.-++.+|.+ ++.|++||.++.+....+.++.........+ + .++.++++|+...|.. . ..+
T Consensus 89 ~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~-~-~~~ 164 (250)
T PRK10742 89 LPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD-I-TPR 164 (250)
T ss_pred CCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh-C-CCC
Confidence 469999999999999999999 7789999999998888887776531111111 2 5799999999887764 3 347
Q ss_pred ccEEEEeCCCCcccc
Q 025492 143 LTKMFFLFPDPHFKE 157 (252)
Q Consensus 143 ~d~i~~~fpdP~~k~ 157 (252)
+|.||+..|-|..++
T Consensus 165 fDVVYlDPMfp~~~k 179 (250)
T PRK10742 165 PQVVYLDPMFPHKQK 179 (250)
T ss_pred CcEEEECCCCCCCcc
Confidence 999999777776543
No 225
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.89 E-value=0.00083 Score=56.53 Aligned_cols=122 Identities=13% Similarity=0.059 Sum_probs=81.8
Q ss_pred CCceEEEEcCcccHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025492 65 KKIQFADIGCGFGGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL 143 (252)
Q Consensus 65 ~~~~vLDIGcG~G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~ 143 (252)
++..||-+|..+|.....++.. .++..++|||.|+...+..-..+ + .-+||-.+-.||...-....--+.+
T Consensus 73 ~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la-~-------~R~NIiPIl~DAr~P~~Y~~lv~~V 144 (229)
T PF01269_consen 73 PGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLA-K-------KRPNIIPILEDARHPEKYRMLVEMV 144 (229)
T ss_dssp TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHH-H-------HSTTEEEEES-TTSGGGGTTTS--E
T ss_pred CCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHh-c-------cCCceeeeeccCCChHHhhcccccc
Confidence 3569999999999999999998 45889999999997654433222 2 3469999999997322111113489
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe---------CchHHHHHHHHHHhcCC
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT---------DVEELGDWMRSCLENHP 204 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t---------d~~~~~~~~~~~~~~~~ 204 (252)
|.|+.....|-- ..-++..+...||+||.+++.. +.+..+..-.+.+.+..
T Consensus 145 DvI~~DVaQp~Q----------a~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~ 204 (229)
T PF01269_consen 145 DVIFQDVAQPDQ----------ARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEG 204 (229)
T ss_dssp EEEEEE-SSTTH----------HHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTT
T ss_pred cEEEecCCChHH----------HHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcC
Confidence 999987665531 1136677778999999888753 34556666666776643
No 226
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.85 E-value=4e-05 Score=64.24 Aligned_cols=146 Identities=14% Similarity=0.128 Sum_probs=84.6
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCC-CCccc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFE-KGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~-~~s~d 144 (252)
....||.|+|-|..+-.+.... -..|--||..+..++.|++.+.. ....-..+.+..+.+ +-| ++.+|
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~------~~~~v~~~~~~gLQ~----f~P~~~~YD 124 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGK------DNPRVGEFYCVGLQD----FTPEEGKYD 124 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCC------GGCCEEEEEES-GGG--------TT-EE
T ss_pred cceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcc------cCCCcceEEecCHhh----ccCCCCcEe
Confidence 4589999999999998776554 34789999999999888764321 112235666666553 233 47999
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcccccccccccCccccCCC
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLS 224 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 224 (252)
.|++.+.--+-.... + -.||+.+...|+|+|.|+++-+... .+ +..... .|- -..+
T Consensus 125 lIW~QW~lghLTD~d----l--v~fL~RCk~~L~~~G~IvvKEN~~~-----------~~-~~~~D~----~Ds--SvTR 180 (218)
T PF05891_consen 125 LIWIQWCLGHLTDED----L--VAFLKRCKQALKPNGVIVVKENVSS-----------SG-FDEFDE----EDS--SVTR 180 (218)
T ss_dssp EEEEES-GGGS-HHH----H--HHHHHHHHHHEEEEEEEEEEEEEES-----------SS-EEEEET----TTT--EEEE
T ss_pred EEEehHhhccCCHHH----H--HHHHHHHHHhCcCCcEEEEEecCCC-----------CC-CcccCC----ccC--eeec
Confidence 999987543321111 1 2499999999999999999764321 11 111110 010 0012
Q ss_pred CCCHHHHHHHHcCCCeEEEEEE
Q 025492 225 SATEEGQKVARNGGQTFQAVFR 246 (252)
Q Consensus 225 ~~t~~e~~~~~~G~~i~~~~~~ 246 (252)
+...|.+.+.++|..+-.-...
T Consensus 181 s~~~~~~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 181 SDEHFRELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp EHHHHHHHHHHCT-EEEEEEE-
T ss_pred CHHHHHHHHHHcCCEEEEeccc
Confidence 3346788888888877665544
No 227
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.78 E-value=7.5e-05 Score=61.06 Aligned_cols=98 Identities=20% Similarity=0.207 Sum_probs=69.6
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM 146 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i 146 (252)
.++.|+|+|+|.++.-.|.. ..+|++||.++...+.|.+|+ +-.+..|+.++.+||.. .+ | ...|.|
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~------~v~g~~n~evv~gDA~~-y~--f--e~ADvv 100 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENL------HVPGDVNWEVVVGDARD-YD--F--ENADVV 100 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcC------CCCCCcceEEEeccccc-cc--c--ccccee
Confidence 58999999999999888877 568999999999988888876 23588999999999974 22 3 234555
Q ss_pred EEeCCCCc-cccccccccccCHHHHHHHHHhhcCCcEEE
Q 025492 147 FFLFPDPH-FKEKNHRRRVISPHLLDEYAYVLGVGGIIY 184 (252)
Q Consensus 147 ~~~fpdP~-~k~~h~krr~~~~~~l~~~~~~LkpgG~l~ 184 (252)
.+-.-|-- .... +-..++.+...|+-+|+++
T Consensus 101 icEmlDTaLi~E~-------qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 101 ICEMLDTALIEEK-------QVPVINAVLEFLRYDPTII 132 (252)
T ss_pred HHHHhhHHhhccc-------ccHHHHHHHHHhhcCCccc
Confidence 43221110 0000 1137777888888998885
No 228
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.78 E-value=4.4e-05 Score=67.15 Aligned_cols=108 Identities=12% Similarity=0.209 Sum_probs=70.1
Q ss_pred ceEEEEcCcccHHHHHHHHH----CC----CCeEEEEecCHhHHHHHHHHHHH---Hhhc---------CC-----CC--
Q 025492 67 IQFADIGCGFGGLLISLSTL----FP----EVLMIGMELRDKVTEYVKERILA---LRVS---------NP-----GQ-- 119 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~----~p----~~~~iGiDis~~~i~~a~~~~~~---~~~~---------~~-----~~-- 119 (252)
-.|.-.||++|+=.-.||-. .+ +..++|+|||..+++.|++-+-. ++.. .. .+
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 48999999999754433332 22 46799999999999999764211 1100 00 01
Q ss_pred -----c-ccEEEEeCCcccccCccCCCCcccEEEE-----eCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 120 -----Y-QNISVVRTNSMKYIPNYFEKGQLTKMFF-----LFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 120 -----~-~nv~~~~~da~~~l~~~~~~~s~d~i~~-----~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
+ ..|.|.+.|+.+ +.+.+.+.+|.|++ .|..+. ...+++.+++.|+|||.|++-.
T Consensus 197 ~v~~~lr~~V~F~~~NL~~--~~~~~~~~fD~I~cRNvliyF~~~~-----------~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLA--KQWAVPGPFDAIFCRNVMIYFDKTT-----------QERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEChHHHccCEEEcccCCC--CCCccCCCcceeeHhhHHhcCCHHH-----------HHHHHHHHHHHhCCCcEEEEeC
Confidence 1 357888888753 12223578999986 342221 2369999999999999987743
No 229
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.76 E-value=0.00016 Score=60.28 Aligned_cols=137 Identities=10% Similarity=0.123 Sum_probs=84.2
Q ss_pred CCCcccccccCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccCCCCCceEEEEcCcccHHHHHHHHHCC-CCeEEE
Q 025492 16 LPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQVNCSKKIQFADIGCGFGGLLISLSTLFP-EVLMIG 94 (252)
Q Consensus 16 ~~~~~~~~~r~~~np~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~vLDIGcG~G~~~~~lA~~~p-~~~~iG 94 (252)
+-...||+.....++.++...+.. ..++-|.-. .+...|+||||-.|.++..+++... ...++|
T Consensus 11 ~~~D~Y~~~Ak~~gyRSRAa~KL~------el~~k~~i~---------~~~~~ViDLGAAPGgWsQva~~~~~~~~~iva 75 (205)
T COG0293 11 HLRDPYYKKAKKEGYRSRAAYKLL------ELNEKFKLF---------KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVA 75 (205)
T ss_pred hhcCHHHHHHhhccccchHHHHHH------HHHHhcCee---------cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEE
Confidence 344556655555556665544332 233334222 1256899999999999999999854 456999
Q ss_pred EecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCccc-----ccCccCCCCcccEEEEeCCCCccccc------ccccc
Q 025492 95 MELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMK-----YIPNYFEKGQLTKMFFLFPDPHFKEK------NHRRR 163 (252)
Q Consensus 95 iDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~-----~l~~~~~~~s~d~i~~~fpdP~~k~~------h~krr 163 (252)
||+.+- ...++|.++++|+.. .+...+....+|.|... .-++.. |...-
T Consensus 76 vDi~p~-----------------~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD---~ap~~~g~~~~Dh~r~~ 135 (205)
T COG0293 76 VDILPM-----------------KPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSD---MAPNTSGNRSVDHARSM 135 (205)
T ss_pred EECccc-----------------ccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEec---CCCCcCCCccccHHHHH
Confidence 999763 246679999999853 12223444556887753 222211 11111
Q ss_pred ccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 164 VISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 164 ~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
-+....+..+..+|+|||.+++..
T Consensus 136 ~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 136 YLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred HHHHHHHHHHHHeeCCCCeEEEEE
Confidence 122345666678999999998865
No 230
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.74 E-value=0.00038 Score=60.48 Aligned_cols=93 Identities=24% Similarity=0.222 Sum_probs=64.4
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccC-CCCccc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYF-EKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~-~~~s~d 144 (252)
...|||||.|.|.++..|++.. .++++||+++.+++..++++ ...+|+.++.+|+.. ++... ....-.
T Consensus 31 ~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~--------~~~~~~~vi~~D~l~-~~~~~~~~~~~~ 99 (262)
T PF00398_consen 31 GDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERF--------ASNPNVEVINGDFLK-WDLYDLLKNQPL 99 (262)
T ss_dssp TSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHC--------TTCSSEEEEES-TTT-SCGGGHCSSSEE
T ss_pred CCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHh--------hhcccceeeecchhc-cccHHhhcCCce
Confidence 5689999999999999999996 78999999999877665433 246799999999874 43211 123445
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCC
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVG 180 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~Lkpg 180 (252)
.|+.|.|- . +...++..+...-+.|
T Consensus 100 ~vv~NlPy--~---------is~~il~~ll~~~~~g 124 (262)
T PF00398_consen 100 LVVGNLPY--N---------ISSPILRKLLELYRFG 124 (262)
T ss_dssp EEEEEETG--T---------GHHHHHHHHHHHGGGC
T ss_pred EEEEEecc--c---------chHHHHHHHhhccccc
Confidence 67777653 1 2345777666644443
No 231
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.72 E-value=2.1e-05 Score=68.10 Aligned_cols=96 Identities=25% Similarity=0.337 Sum_probs=64.0
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
..+++|+|||+|.++. .+|.+.++|.|++...+..|++ .+.+ ....+|+. .++ +.+.++|.
T Consensus 46 gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~----------~~~~--~~~~ad~l-~~p--~~~~s~d~ 106 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKR----------SGGD--NVCRADAL-KLP--FREESFDA 106 (293)
T ss_pred cceeeecccCCcccCc----CCCcceeeecchhhhhcccccc----------CCCc--eeehhhhh-cCC--CCCCcccc
Confidence 4589999999996553 4588999999999887655432 1222 56778876 344 66777777
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT 185 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~ 185 (252)
+...---.|.. -+.-....++++.++|+|||...+
T Consensus 107 ~lsiavihhls-----T~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 107 ALSIAVIHHLS-----TRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred chhhhhhhhhh-----hHHHHHHHHHHHHHHhcCCCceEE
Confidence 64321111111 111124699999999999998666
No 232
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.70 E-value=0.00047 Score=62.75 Aligned_cols=116 Identities=15% Similarity=0.194 Sum_probs=87.6
Q ss_pred CCceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025492 65 KKIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL 143 (252)
Q Consensus 65 ~~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~ 143 (252)
++.+|||..+..|.=+.++|.... ...+++.|.+...+.....++..+ |..|..++..|..++-...|+. +|
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rl------Gv~ntiv~n~D~~ef~~~~~~~-~f 313 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRL------GVTNTIVSNYDGREFPEKEFPG-SF 313 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHh------CCCceEEEccCcccccccccCc-cc
Confidence 467999999999999999998744 347899999999998888888766 8999999999987532344555 99
Q ss_pred cEEEEeCCCCc---------ccccc-----ccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 144 TKMFFLFPDPH---------FKEKN-----HRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 144 d~i~~~fpdP~---------~k~~h-----~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
|.|.+.-|..- .+... ...--+|..+|......+++||+|+-+|
T Consensus 314 DRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 314 DRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred ceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 99998765322 11100 0011245679999999999999999876
No 233
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=97.66 E-value=0.0002 Score=58.02 Aligned_cols=131 Identities=15% Similarity=0.244 Sum_probs=83.7
Q ss_pred EcCcccHHHHHHHHHCC-CCeEEEEecC--HhHHHH---HHHHHHHHhhcCCCCcccEEEE-eCCcccccCccC--CCCc
Q 025492 72 IGCGFGGLLISLSTLFP-EVLMIGMELR--DKVTEY---VKERILALRVSNPGQYQNISVV-RTNSMKYIPNYF--EKGQ 142 (252)
Q Consensus 72 IGcG~G~~~~~lA~~~p-~~~~iGiDis--~~~i~~---a~~~~~~~~~~~~~~~~nv~~~-~~da~~~l~~~~--~~~s 142 (252)
||=|.=.|+.+||+.+. ..++++.-.. ....+. +..++..++ ..++.++ ..||. .+...+ ....
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~------~~g~~V~~~VDat-~l~~~~~~~~~~ 75 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELR------ELGVTVLHGVDAT-KLHKHFRLKNQR 75 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHh------hcCCccccCCCCC-cccccccccCCc
Confidence 56677778888888876 6677665444 333322 234555541 2234444 46776 465555 6788
Q ss_pred ccEEEEeCCCCcccccc-----ccccccCHHHHHHHHHhhcCCcEEEEEe-CchHHHHHHHHHHhcCCCcccc
Q 025492 143 LTKMFFLFPDPHFKEKN-----HRRRVISPHLLDEYAYVLGVGGIIYTIT-DVEELGDWMRSCLENHPMFEAL 209 (252)
Q Consensus 143 ~d~i~~~fpdP~~k~~h-----~krr~~~~~~l~~~~~~LkpgG~l~~~t-d~~~~~~~~~~~~~~~~~~~~~ 209 (252)
+|.|+.|||-.-....+ ...|.+-..|+..+..+|+++|.|+++. +...|-.|-.+.+.+...|.-.
T Consensus 76 FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~ 148 (166)
T PF10354_consen 76 FDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVLV 148 (166)
T ss_pred CCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEEE
Confidence 99999999865411111 1223344689999999999999999865 3456777877777766555444
No 234
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.63 E-value=0.00023 Score=61.95 Aligned_cols=108 Identities=17% Similarity=0.253 Sum_probs=71.3
Q ss_pred ceEEEEcCcccHHH----HHHHHHCC-----CCeEEEEecCHhHHHHHHHHHHH-Hhh---c-----------CCCC---
Q 025492 67 IQFADIGCGFGGLL----ISLSTLFP-----EVLMIGMELRDKVTEYVKERILA-LRV---S-----------NPGQ--- 119 (252)
Q Consensus 67 ~~vLDIGcG~G~~~----~~lA~~~p-----~~~~iGiDis~~~i~~a~~~~~~-~~~---~-----------~~~~--- 119 (252)
-.|.-+||++|+=. +.+++..+ ...++|.|||..+++.|+.-+-. ... . ...+
T Consensus 98 irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~ 177 (268)
T COG1352 98 IRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYR 177 (268)
T ss_pred eEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEE
Confidence 37999999999733 34444454 57899999999999988653211 000 0 1111
Q ss_pred -----cccEEEEeCCcccccCccCCCCcccEEEE----eCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 120 -----YQNISVVRTNSMKYIPNYFEKGQLTKMFF----LFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 120 -----~~nv~~~~~da~~~l~~~~~~~s~d~i~~----~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
..+|.|-+.|+.. +....+.+|.|++ .|=|.. ++..+++.++..|+|||.|++-.
T Consensus 178 v~~~ir~~V~F~~~NLl~---~~~~~~~fD~IfCRNVLIYFd~~----------~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 178 VKEELRKMVRFRRHNLLD---DSPFLGKFDLIFCRNVLIYFDEE----------TQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EChHHhcccEEeecCCCC---CccccCCCCEEEEcceEEeeCHH----------HHHHHHHHHHHHhCCCCEEEEcc
Confidence 2357777777642 2224677999974 232433 23469999999999999999854
No 235
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.0016 Score=53.96 Aligned_cols=122 Identities=16% Similarity=0.123 Sum_probs=86.3
Q ss_pred CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
++..||=+|.-+|+...+.+...++..++|||.|+.+.+..-..+. .-+|+--+-.||..-.....--..+|
T Consensus 76 ~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~--------~R~Ni~PIL~DA~~P~~Y~~~Ve~VD 147 (231)
T COG1889 76 EGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAE--------KRPNIIPILEDARKPEKYRHLVEKVD 147 (231)
T ss_pred CCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHH--------hCCCceeeecccCCcHHhhhhccccc
Confidence 4679999999999999999999888889999999987654433221 35799999999963111111135689
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE---------eCchHHHHHHHHHHhcCC
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI---------TDVEELGDWMRSCLENHP 204 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~---------td~~~~~~~~~~~~~~~~ 204 (252)
.|+.....|-. ..-+...+...||+||.+.++ .|..+.+..-.+.+.+..
T Consensus 148 viy~DVAQp~Q----------a~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~ 206 (231)
T COG1889 148 VIYQDVAQPNQ----------AEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGG 206 (231)
T ss_pred EEEEecCCchH----------HHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcC
Confidence 99987655531 123777889999999955553 245566666666666554
No 236
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.56 E-value=0.00045 Score=54.19 Aligned_cols=93 Identities=15% Similarity=0.254 Sum_probs=59.0
Q ss_pred eEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEEEeCC-CCccccccccccccCHHH
Q 025492 91 LMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMFFLFP-DPHFKEKNHRRRVISPHL 169 (252)
Q Consensus 91 ~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~~~fp-dP~~k~~h~krr~~~~~~ 169 (252)
.|+|+||-+.+++.+++++.+. ....++.++..+-. .+..+++++.+|.++.|+- -|--.+.-.-+.-.+-..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~-----~~~~~v~li~~sHe-~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~A 74 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEA-----GLEDRVTLILDSHE-NLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKA 74 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHT-----T-GSGEEEEES-GG-GGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhc-----CCCCcEEEEECCHH-HHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHH
Confidence 4899999999999999988764 22347999998865 5777777779999998851 111111111111223457
Q ss_pred HHHHHHhhcCCcEEEEEeCc
Q 025492 170 LDEYAYVLGVGGIIYTITDV 189 (252)
Q Consensus 170 l~~~~~~LkpgG~l~~~td~ 189 (252)
++.+..+|+|||.+.++.-.
T Consensus 75 l~~al~lL~~gG~i~iv~Y~ 94 (140)
T PF06962_consen 75 LEAALELLKPGGIITIVVYP 94 (140)
T ss_dssp HHHHHHHEEEEEEEEEEE--
T ss_pred HHHHHHhhccCCEEEEEEeC
Confidence 88899999999999998754
No 237
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.52 E-value=0.00047 Score=61.05 Aligned_cols=77 Identities=14% Similarity=0.235 Sum_probs=61.1
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccC---CCCc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYF---EKGQ 142 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~---~~~s 142 (252)
+.++||.=||.|.++..+++..++..++|+|.++.+++.|++++... ..++.+++++..+ +...+ ...+
T Consensus 21 ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~-------~~R~~~i~~nF~~-l~~~l~~~~~~~ 92 (305)
T TIGR00006 21 DGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF-------EGRVVLIHDNFAN-FFEHLDELLVTK 92 (305)
T ss_pred CCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc-------CCcEEEEeCCHHH-HHHHHHhcCCCc
Confidence 45899999999999999999987789999999999999988766432 3579999999764 33333 3357
Q ss_pred ccEEEEeC
Q 025492 143 LTKMFFLF 150 (252)
Q Consensus 143 ~d~i~~~f 150 (252)
+|.|+++.
T Consensus 93 vDgIl~DL 100 (305)
T TIGR00006 93 IDGILVDL 100 (305)
T ss_pred ccEEEEec
Confidence 89998653
No 238
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.52 E-value=0.00035 Score=62.30 Aligned_cols=148 Identities=15% Similarity=0.172 Sum_probs=92.6
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
-...||+|-|.|..+-.+...+|. +-||+.+.+.+..++..+ + +.|..+-+|... + .|++ |.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~---------~-~gV~~v~gdmfq---~-~P~~--da 239 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYL---------A-PGVEHVAGDMFQ---D-TPKG--DA 239 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhh---------c-CCcceecccccc---c-CCCc--Ce
Confidence 468999999999999999998886 678888887765544322 2 458888888643 3 4544 47
Q ss_pred EEEeCCC-CccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCccccccc--c--cc-cCcc
Q 025492 146 MFFLFPD-PHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKE--E--LE-ADPV 219 (252)
Q Consensus 146 i~~~fpd-P~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~~~~--~--~~-~~p~ 219 (252)
|++.+-- .|..+. .-.||+.+...|+|||.|+++-..-+- +.-. ......++.. . +. ..-+
T Consensus 240 I~mkWiLhdwtDed-------cvkiLknC~~sL~~~GkIiv~E~V~p~-----e~~~-dd~~s~v~~~~d~lm~~~~~~G 306 (342)
T KOG3178|consen 240 IWMKWILHDWTDED-------CVKILKNCKKSLPPGGKIIVVENVTPE-----EDKF-DDIDSSVTRDMDLLMLTQTSGG 306 (342)
T ss_pred EEEEeecccCChHH-------HHHHHHHHHHhCCCCCEEEEEeccCCC-----CCCc-cccccceeehhHHHHHHHhccc
Confidence 7765432 232221 225999999999999999986532110 0000 0001111110 0 01 1112
Q ss_pred ccCCCCCCHHHHHHHHcCCCeEEEEEE
Q 025492 220 VKLLSSATEEGQKVARNGGQTFQAVFR 246 (252)
Q Consensus 220 ~~~~~~~t~~e~~~~~~G~~i~~~~~~ 246 (252)
. .+...+|+.....+|+.+|.+.+.
T Consensus 307 k--ert~~e~q~l~~~~gF~~~~~~~~ 331 (342)
T KOG3178|consen 307 K--ERTLKEFQALLPEEGFPVCMVALT 331 (342)
T ss_pred e--eccHHHHHhcchhhcCceeEEEec
Confidence 1 256678999999999999988765
No 239
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.50 E-value=0.00023 Score=64.62 Aligned_cols=100 Identities=21% Similarity=0.266 Sum_probs=73.8
Q ss_pred CCCCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc-EEEEeCCcccccCccCCCC
Q 025492 63 CSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQN-ISVVRTNSMKYIPNYFEKG 141 (252)
Q Consensus 63 ~~~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~~~~da~~~l~~~~~~~ 141 (252)
+.+...++|+|||.|.....++.-. .+.++|++.++..+..+....... .+.| ..++.+|.. ...++++
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~-~~~~~Gl~~n~~e~~~~~~~~~~~------~l~~k~~~~~~~~~---~~~fedn 177 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFK-KAGVVGLDNNAYEAFRANELAKKA------YLDNKCNFVVADFG---KMPFEDN 177 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhc-cCCccCCCcCHHHHHHHHHHHHHH------Hhhhhcceehhhhh---cCCCCcc
Confidence 3344579999999999999988874 578999999998776666544332 3333 223556654 3448899
Q ss_pred cccEEEEe-----CCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025492 142 QLTKMFFL-----FPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT 185 (252)
Q Consensus 142 s~d~i~~~-----fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~ 185 (252)
++|.+..+ -|+++ .+++++.++|+|||.+..
T Consensus 178 ~fd~v~~ld~~~~~~~~~-------------~~y~Ei~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 178 TFDGVRFLEVVCHAPDLE-------------KVYAEIYRVLKPGGLFIV 213 (364)
T ss_pred ccCcEEEEeecccCCcHH-------------HHHHHHhcccCCCceEEe
Confidence 99999864 45655 699999999999999976
No 240
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.50 E-value=0.00048 Score=60.76 Aligned_cols=82 Identities=15% Similarity=0.165 Sum_probs=46.2
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCccc-ccCccC-CCCcc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMK-YIPNYF-EKGQL 143 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~-~l~~~~-~~~s~ 143 (252)
.-.+||||||...+-.-|+.+..+++|+|.||++..++.|++++... ..-..+|.++...-.. .+.... +...+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N----~~L~~~I~l~~~~~~~~i~~~i~~~~e~~ 178 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERN----PNLESRIELRKQKNPDNIFDGIIQPNERF 178 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-----T-TTTEEEEE--ST-SSTTTSTT--S-E
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhc----cccccceEEEEcCCccccchhhhccccee
Confidence 45899999999876555555545899999999999999999998653 1123457777653221 232222 23567
Q ss_pred cEEEEeCC
Q 025492 144 TKMFFLFP 151 (252)
Q Consensus 144 d~i~~~fp 151 (252)
|..++|.|
T Consensus 179 dftmCNPP 186 (299)
T PF05971_consen 179 DFTMCNPP 186 (299)
T ss_dssp EEEEE---
T ss_pred eEEecCCc
Confidence 77777654
No 241
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.49 E-value=7.5e-05 Score=62.43 Aligned_cols=60 Identities=15% Similarity=0.227 Sum_probs=50.9
Q ss_pred CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCccc
Q 025492 65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMK 132 (252)
Q Consensus 65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~ 132 (252)
..++|+|.-||.|.-++..|.++| .|++||+++.-|..|++|++- .|++ .|.|+++|..+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaei------YGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEV------YGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhcccee------ecCCceeEEEechHHH
Confidence 467999999999999999999965 689999999999988887643 3553 69999999864
No 242
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.47 E-value=2.3e-05 Score=65.18 Aligned_cols=109 Identities=18% Similarity=0.286 Sum_probs=62.4
Q ss_pred CceEEEEcCcccHHHHHHHHH--------CC-CCeEEEEecCHhHHHHHHHHHHHHhhc---------------CCCC--
Q 025492 66 KIQFADIGCGFGGLLISLSTL--------FP-EVLMIGMELRDKVTEYVKERILALRVS---------------NPGQ-- 119 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~--------~p-~~~~iGiDis~~~i~~a~~~~~~~~~~---------------~~~~-- 119 (252)
.-.|.-.||++|+=.-.||-. .+ ...++|.|+|+.+++.|++-+-..... ....
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 348999999999754443332 12 468999999999999886531100000 1001
Q ss_pred -----cccEEEEeCCcccccCccCCCCcccEEEEe----CCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 120 -----YQNISVVRTNSMKYIPNYFEKGQLTKMFFL----FPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 120 -----~~nv~~~~~da~~~l~~~~~~~s~d~i~~~----fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
-.+|.|.+.|+.+ ...+.+.+|.|++- |=++. .+..+++.+++.|+|||.|++-.
T Consensus 112 v~~~lr~~V~F~~~NL~~---~~~~~~~fD~I~CRNVlIYF~~~----------~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNLLD---PDPPFGRFDLIFCRNVLIYFDPE----------TQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp E-HHHHTTEEEEE--TT----S------EEEEEE-SSGGGS-HH----------HHHHHHHHHGGGEEEEEEEEE-T
T ss_pred EChHHcCceEEEecccCC---CCcccCCccEEEecCEEEEeCHH----------HHHHHHHHHHHHcCCCCEEEEec
Confidence 2368899988764 22346789999752 21222 12469999999999999999864
No 243
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.44 E-value=0.00075 Score=56.56 Aligned_cols=115 Identities=18% Similarity=0.154 Sum_probs=74.9
Q ss_pred EEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCc-ccEEE
Q 025492 69 FADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQ-LTKMF 147 (252)
Q Consensus 69 vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s-~d~i~ 147 (252)
|.||||--|.+.+.|.++..-..++++|+++..++.|++++... +-...+.+..+|-... +.++. +|.|+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~-----~l~~~i~~rlgdGL~~----l~~~e~~d~iv 71 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKY-----GLEDRIEVRLGDGLEV----LKPGEDVDTIV 71 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT-----T-TTTEEEEE-SGGGG------GGG---EEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc-----CCcccEEEEECCcccc----cCCCCCCCEEE
Confidence 68999999999999999987778999999999999999998764 2235699999997543 34555 88888
Q ss_pred EeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025492 148 FLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP 204 (252)
Q Consensus 148 ~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~ 204 (252)
+---- .. +-..+|+.....++....|+++.... ...+...+.+++
T Consensus 72 IAGMG---------G~-lI~~ILe~~~~~~~~~~~lILqP~~~--~~~LR~~L~~~g 116 (205)
T PF04816_consen 72 IAGMG---------GE-LIIEILEAGPEKLSSAKRLILQPNTH--AYELRRWLYENG 116 (205)
T ss_dssp EEEE----------HH-HHHHHHHHTGGGGTT--EEEEEESS---HHHHHHHHHHTT
T ss_pred EecCC---------HH-HHHHHHHhhHHHhccCCeEEEeCCCC--hHHHHHHHHHCC
Confidence 74210 00 11246666666666666788876543 334555555554
No 244
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.37 E-value=0.0011 Score=59.41 Aligned_cols=86 Identities=13% Similarity=0.212 Sum_probs=63.1
Q ss_pred CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
++..+|||||++|.++-.++++ +..|+|||..+ | +. .+ ...++|..+..|.....+. ...+|
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~-l---~~-~L--------~~~~~V~h~~~d~fr~~p~---~~~vD 272 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGP-M---AQ-SL--------MDTGQVEHLRADGFKFRPP---RKNVD 272 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechh-c---CH-hh--------hCCCCEEEEeccCcccCCC---CCCCC
Confidence 3569999999999999999999 56999999654 1 11 11 1457899999998653331 56789
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCC
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVG 180 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~Lkpg 180 (252)
.+++..-.... ...+.+.++|..|
T Consensus 273 wvVcDmve~P~------------rva~lm~~Wl~~g 296 (357)
T PRK11760 273 WLVCDMVEKPA------------RVAELMAQWLVNG 296 (357)
T ss_pred EEEEecccCHH------------HHHHHHHHHHhcC
Confidence 99876644332 4778888888776
No 245
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.34 E-value=0.0008 Score=57.59 Aligned_cols=83 Identities=17% Similarity=0.264 Sum_probs=57.6
Q ss_pred ccccCCCCCCCCCccCCCCCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEE
Q 025492 47 YSLHYPHFFPPADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVV 126 (252)
Q Consensus 47 w~~~f~~~~~~~~~~~~~~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~ 126 (252)
+..+|+...+ ...|+|||||---+++......|+..|+|+||+..+++....-+..+ + .+..+.
T Consensus 96 Y~~if~~~~~---------p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l------~-~~~~~~ 159 (251)
T PF07091_consen 96 YDEIFGRIPP---------PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL------G-VPHDAR 159 (251)
T ss_dssp HHHHCCCS------------SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT------T--CEEEE
T ss_pred HHHHHhcCCC---------CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh------C-CCccee
Confidence 4677776532 34899999999999988888888899999999999999887655543 2 456666
Q ss_pred eCCcccccCccCCCCcccEEEEe
Q 025492 127 RTNSMKYIPNYFEKGQLTKMFFL 149 (252)
Q Consensus 127 ~~da~~~l~~~~~~~s~d~i~~~ 149 (252)
..|... ..+....|...+.
T Consensus 160 v~Dl~~----~~~~~~~DlaLll 178 (251)
T PF07091_consen 160 VRDLLS----DPPKEPADLALLL 178 (251)
T ss_dssp EE-TTT----SHTTSEESEEEEE
T ss_pred Eeeeec----cCCCCCcchhhHH
Confidence 667542 1346678887765
No 246
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.19 E-value=0.0041 Score=54.38 Aligned_cols=106 Identities=13% Similarity=0.164 Sum_probs=62.9
Q ss_pred ceEEEEcCcc-cHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCcc
Q 025492 67 IQFADIGCGF-GGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQL 143 (252)
Q Consensus 67 ~~vLDIGcG~-G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~ 143 (252)
..|+=||||. -..++.+|+. .++..|+++|+++.+++.+++.+... .++ ..+.|+.+|+.+ +. .+-..+
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~-----~~L~~~m~f~~~d~~~-~~--~dl~~~ 193 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASD-----LGLSKRMSFITADVLD-VT--YDLKEY 193 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH--------HH-SSEEEEES-GGG-G---GG----
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhc-----ccccCCeEEEecchhc-cc--cccccC
Confidence 3899999996 5566777765 46788999999999999998766521 133 458999999864 32 223578
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
|.|++----...+. .| .++|+.+.+.++||..+.+.+
T Consensus 194 DvV~lAalVg~~~e--~K-----~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 194 DVVFLAALVGMDAE--PK-----EEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp SEEEE-TT-S------SH-----HHHHHHHHHHS-TTSEEEEEE
T ss_pred CEEEEhhhcccccc--hH-----HHHHHHHHhhCCCCcEEEEec
Confidence 99987542221111 11 259999999999999999987
No 247
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.18 E-value=0.0033 Score=54.72 Aligned_cols=108 Identities=17% Similarity=0.122 Sum_probs=67.2
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhc------------------------------
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVS------------------------------ 115 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~------------------------------ 115 (252)
...||=-|||-|.++..+|.+ +..+.|.|.|--|+-...-.+......
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 568999999999999999999 778999999999863222111110000
Q ss_pred ----CCCCcccEEEEeCCcccccCccCCCCcccEEEEeC-CCCccccccccccccCHHHHHHHHHhhcCCcEEE
Q 025492 116 ----NPGQYQNISVVRTNSMKYIPNYFEKGQLTKMFFLF-PDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIY 184 (252)
Q Consensus 116 ----~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~~~f-pdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~ 184 (252)
......|+....+|..+.-...-..+++|.|+..| -|=-.. --++|+.+.++|||||..+
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~N---------i~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAEN---------IIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHH---------HHHHHHHHHHHhccCCEEE
Confidence 00112356666666554221111136888887543 221100 1259999999999999553
No 248
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=97.06 E-value=0.008 Score=54.12 Aligned_cols=133 Identities=15% Similarity=0.195 Sum_probs=88.3
Q ss_pred CCCCceEEEEcCcccHHHHHHHHHCC----CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccC
Q 025492 63 CSKKIQFADIGCGFGGLLISLSTLFP----EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYF 138 (252)
Q Consensus 63 ~~~~~~vLDIGcG~G~~~~~lA~~~p----~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~ 138 (252)
.++...|||++...|.=++.|.+..- ...+++=|++...+......+.. ...+|+.+...|+. ..+...
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~------l~~~~~~v~~~~~~-~~p~~~ 225 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKR------LPSPNLLVTNHDAS-LFPNIY 225 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhc------cCCcceeeecccce-eccccc
Confidence 34567999999999999988888732 23799999999877666554422 35667888887775 344332
Q ss_pred -------CCCcccEEEEeCC---CCcccc--------ccccc----cccCHHHHHHHHHhhcCCcEEEEEe------Cch
Q 025492 139 -------EKGQLTKMFFLFP---DPHFKE--------KNHRR----RVISPHLLDEYAYVLGVGGIIYTIT------DVE 190 (252)
Q Consensus 139 -------~~~s~d~i~~~fp---dP~~k~--------~h~kr----r~~~~~~l~~~~~~LkpgG~l~~~t------d~~ 190 (252)
....||.|.+.-| |.+..+ +...+ -.+|-.+|..-.++||+||.++-+| -++
T Consensus 226 ~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNE 305 (375)
T KOG2198|consen 226 LKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENE 305 (375)
T ss_pred cccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhH
Confidence 2345899988665 222111 11111 2356679999999999999999987 245
Q ss_pred HHHHHHHHHHhc
Q 025492 191 ELGDWMRSCLEN 202 (252)
Q Consensus 191 ~~~~~~~~~~~~ 202 (252)
.+...+++....
T Consensus 306 aVV~~~L~~~~~ 317 (375)
T KOG2198|consen 306 AVVQEALQKVGG 317 (375)
T ss_pred HHHHHHHHHhcC
Confidence 555555555543
No 249
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=97.03 E-value=0.0048 Score=53.95 Aligned_cols=130 Identities=12% Similarity=0.066 Sum_probs=100.1
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM 146 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i 146 (252)
..||=||=|.|.++...++.-.-.+++-+|++...++....-+..+ +....-+.|.++-+|...++. ..+.+.+|.|
T Consensus 123 kkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~l--a~gy~~~~v~l~iGDG~~fl~-~~~~~~~dVi 199 (337)
T KOG1562|consen 123 KKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTL--ACGYEGKKVKLLIGDGFLFLE-DLKENPFDVI 199 (337)
T ss_pred CeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHH--hcccCCCceEEEeccHHHHHH-HhccCCceEE
Confidence 4899999999999998888733457889999999888776555443 123445679999999876554 4568899999
Q ss_pred EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcC
Q 025492 147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENH 203 (252)
Q Consensus 147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~ 203 (252)
++--.||.-.... +....+++.+.+.||+||++.++.++-++.....+.....
T Consensus 200 i~dssdpvgpa~~----lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~r~~ 252 (337)
T KOG1562|consen 200 ITDSSDPVGPACA----LFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKEGRSF 252 (337)
T ss_pred EEecCCccchHHH----HHHHHHHHHHHHhhCCCcEEEEecceehHHHHHHHHHHHh
Confidence 9999998754322 2345799999999999999999999888777777666554
No 250
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.01 E-value=0.0049 Score=55.49 Aligned_cols=105 Identities=17% Similarity=0.171 Sum_probs=83.0
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM 146 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i 146 (252)
..|||-=||+|.=++.+|..-+...++.-|+|+++++.+++|+... ...+...+..||...+... ...||.|
T Consensus 54 ~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N------~~~~~~v~n~DAN~lm~~~--~~~fd~I 125 (380)
T COG1867 54 KRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLN------SGEDAEVINKDANALLHEL--HRAFDVI 125 (380)
T ss_pred eEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhc------CcccceeecchHHHHHHhc--CCCccEE
Confidence 3799999999999999999988778999999999999999988542 4556777788987555421 3678888
Q ss_pred EEe-CCCCccccccccccccCHHHHHHHHHhhcCCcEEEE-EeCchHH
Q 025492 147 FFL-FPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT-ITDVEEL 192 (252)
Q Consensus 147 ~~~-fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~-~td~~~~ 192 (252)
-+. |-.|- .|+....+.++.||.+.+ +||...+
T Consensus 126 DiDPFGSPa-------------PFlDaA~~s~~~~G~l~vTATD~a~L 160 (380)
T COG1867 126 DIDPFGSPA-------------PFLDAALRSVRRGGLLCVTATDTAPL 160 (380)
T ss_pred ecCCCCCCc-------------hHHHHHHHHhhcCCEEEEEecccccc
Confidence 874 33444 499999999999999877 4775443
No 251
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.99 E-value=0.0039 Score=57.01 Aligned_cols=105 Identities=16% Similarity=0.176 Sum_probs=76.3
Q ss_pred ceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc--EEEEeCCcccccCccCCCCcc
Q 025492 67 IQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQN--ISVVRTNSMKYIPNYFEKGQL 143 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n--v~~~~~da~~~l~~~~~~~s~ 143 (252)
-.+||.=+|+|.=++.+|...+ ...++.-|+++++++.++.|+... ++.. +.+.+.||...+. .....+
T Consensus 51 ~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N------~~~~~~~~v~~~DAn~ll~--~~~~~f 122 (377)
T PF02005_consen 51 IRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELN------GLEDERIEVSNMDANVLLY--SRQERF 122 (377)
T ss_dssp EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHC------T-SGCCEEEEES-HHHHHC--HSTT-E
T ss_pred ceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhc------cccCceEEEehhhHHHHhh--hccccC
Confidence 4799999999999999999954 457899999999999999987653 5544 8999999986553 246789
Q ss_pred cEEEEe-CCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE-eCchHH
Q 025492 144 TKMFFL-FPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI-TDVEEL 192 (252)
Q Consensus 144 d~i~~~-fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~-td~~~~ 192 (252)
|.|-+. |-.|- .||..+.+.++.||.|.++ ||...+
T Consensus 123 D~IDlDPfGSp~-------------pfldsA~~~v~~gGll~vTaTD~a~L 160 (377)
T PF02005_consen 123 DVIDLDPFGSPA-------------PFLDSALQAVKDGGLLCVTATDTAVL 160 (377)
T ss_dssp EEEEE--SS--H-------------HHHHHHHHHEEEEEEEEEEE--HHHH
T ss_pred CEEEeCCCCCcc-------------HhHHHHHHHhhcCCEEEEeccccccc
Confidence 999983 22332 5999999999999999885 665443
No 252
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.99 E-value=0.007 Score=59.38 Aligned_cols=122 Identities=18% Similarity=0.249 Sum_probs=75.0
Q ss_pred CceEEEEcCcccHHHHHHHHHC-------C-----CCeEEEEecCH---hHHHHHHHH-------HHHHhhc---CCCCc
Q 025492 66 KIQFADIGCGFGGLLISLSTLF-------P-----EVLMIGMELRD---KVTEYVKER-------ILALRVS---NPGQY 120 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~-------p-----~~~~iGiDis~---~~i~~a~~~-------~~~~~~~---~~~~~ 120 (252)
.-+|+|+|+|+|...+...+.. | ..+|+++|..+ +-+..+... ...+... ...++
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 3489999999999776666433 3 35899999765 222222111 0011000 00121
Q ss_pred ---------ccEEEEeCCcccccCccCCCCcccEEEEeC------CCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025492 121 ---------QNISVVRTNSMKYIPNYFEKGQLTKMFFLF------PDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT 185 (252)
Q Consensus 121 ---------~nv~~~~~da~~~l~~~~~~~s~d~i~~~f------pdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~ 185 (252)
=++.++.+|+.+.+... ...+|.+|+.- |+-| +.+++..+++.++|||++.-
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~--~~~~d~~~lD~FsP~~np~~W-----------~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQL--DARADAWFLDGFAPAKNPDMW-----------SPNLFNALARLARPGATLAT 204 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhc--cccccEEEeCCCCCccChhhc-----------cHHHHHHHHHHhCCCCEEEE
Confidence 15678889988766543 25689999752 2335 45899999999999999986
Q ss_pred EeCchHHHHHHHHHHhcCC
Q 025492 186 ITDVEELGDWMRSCLENHP 204 (252)
Q Consensus 186 ~td~~~~~~~~~~~~~~~~ 204 (252)
-|- +..+...+...+
T Consensus 205 ~t~----a~~vr~~l~~~G 219 (662)
T PRK01747 205 FTS----AGFVRRGLQEAG 219 (662)
T ss_pred eeh----HHHHHHHHHHcC
Confidence 552 344455555544
No 253
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.98 E-value=0.0084 Score=52.50 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=36.5
Q ss_pred eEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHH
Q 025492 68 QFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERIL 110 (252)
Q Consensus 68 ~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~ 110 (252)
.|||+|||.|..+.+....++ -..++++|.|+.|++.++..+.
T Consensus 36 ~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~ 79 (274)
T PF09243_consen 36 SVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLR 79 (274)
T ss_pred eEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHh
Confidence 799999999998888888776 3478999999999998877553
No 254
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.89 E-value=0.0073 Score=49.55 Aligned_cols=105 Identities=12% Similarity=0.082 Sum_probs=63.7
Q ss_pred CceEEEEcCcccHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC-Cccc-----ccCccC
Q 025492 66 KIQFADIGCGFGGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT-NSMK-----YIPNYF 138 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~-da~~-----~l~~~~ 138 (252)
..+|||+||..|.++.-.-++ +|...++|||+-. + .....+.++++ |+.+ .+.+.+
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~--------~p~~Ga~~i~~~dvtdp~~~~ki~e~l 132 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------I--------EPPEGATIIQGNDVTDPETYRKIFEAL 132 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------c--------cCCCCcccccccccCCHHHHHHHHHhC
Confidence 459999999999999887777 5999999999843 1 13344566665 4432 122335
Q ss_pred CCCcccEEEEeC-CCCccc--cccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 139 EKGQLTKMFFLF-PDPHFK--EKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 139 ~~~s~d~i~~~f-pdP~~k--~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
+.-.+|.|.... |++--- ..|..---+....+.-....|+|+|.++..+
T Consensus 133 p~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~ 184 (232)
T KOG4589|consen 133 PNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL 184 (232)
T ss_pred CCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE
Confidence 667788887643 433211 1121100011223333446678999999876
No 255
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.83 E-value=0.0067 Score=52.63 Aligned_cols=104 Identities=13% Similarity=0.223 Sum_probs=58.1
Q ss_pred ceEEEEcCccc--HHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc--EEEEeCCcccc---cC---
Q 025492 67 IQFADIGCGFG--GLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQN--ISVVRTNSMKY---IP--- 135 (252)
Q Consensus 67 ~~vLDIGcG~G--~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n--v~~~~~da~~~---l~--- 135 (252)
..+||||||-= ..+-..|++ .|+++|+=||.++..+..++..+. +.++ ..++++|+.+. |.
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~--------~~~~g~t~~v~aD~r~p~~iL~~p~ 141 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLA--------DNPRGRTAYVQADLRDPEAILAHPE 141 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHT--------T-TTSEEEEEE--TT-HHHHHCSHH
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhc--------CCCCccEEEEeCCCCCHHHHhcCHH
Confidence 37999999953 345566665 899999999999998888776553 3345 89999998641 11
Q ss_pred --ccCC-CCcccEEEE----eCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025492 136 --NYFE-KGQLTKMFF----LFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD 188 (252)
Q Consensus 136 --~~~~-~~s~d~i~~----~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td 188 (252)
..++ +.-+-.+++ +.+|.-. -..+++.+...|.||..|.|+.-
T Consensus 142 ~~~~lD~~rPVavll~~vLh~v~D~~d----------p~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 142 VRGLLDFDRPVAVLLVAVLHFVPDDDD----------PAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp HHCC--TTS--EEEECT-GGGS-CGCT----------HHHHHHHHHCCS-TT-EEEEEEE
T ss_pred HHhcCCCCCCeeeeeeeeeccCCCccC----------HHHHHHHHHHhCCCCceEEEEec
Confidence 1121 122222221 2233110 12699999999999999999753
No 256
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.67 E-value=0.01 Score=55.17 Aligned_cols=103 Identities=20% Similarity=0.242 Sum_probs=74.2
Q ss_pred eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEE
Q 025492 68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMF 147 (252)
Q Consensus 68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~ 147 (252)
++|.+|||+-.+...+-+.. ...++-+|+|+..++....... ...+-..+...|+.. + .|++.++|.|.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~-------~~~~~~~~~~~d~~~-l--~fedESFdiVI 119 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNA-------KERPEMQMVEMDMDQ-L--VFEDESFDIVI 119 (482)
T ss_pred eeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccc-------cCCcceEEEEecchh-c--cCCCcceeEEE
Confidence 79999999998888887773 4568999999988876554321 244568888888753 3 47788888776
Q ss_pred E------eC---CCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025492 148 F------LF---PDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD 188 (252)
Q Consensus 148 ~------~f---pdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td 188 (252)
. .+ .++|.+ ++ -...+.+++++|++||++...|-
T Consensus 120 dkGtlDal~~de~a~~~~--~~-----v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 120 DKGTLDALFEDEDALLNT--AH-----VSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ecCccccccCCchhhhhh--HH-----hhHHHhhHHHHhccCCEEEEEEe
Confidence 3 22 344533 11 23588999999999999888774
No 257
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.67 E-value=0.0013 Score=58.28 Aligned_cols=76 Identities=18% Similarity=0.269 Sum_probs=53.6
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCC----CC
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFE----KG 141 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~----~~ 141 (252)
..++||.=.|.|.++.++.++.|+..++|+|.++.+++.|.+++. ...+++.+++++..+ +...+. ..
T Consensus 21 ~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~-------~~~~r~~~~~~~F~~-l~~~l~~~~~~~ 92 (310)
T PF01795_consen 21 GGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLK-------KFDDRFIFIHGNFSN-LDEYLKELNGIN 92 (310)
T ss_dssp T-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTC-------CCCTTEEEEES-GGG-HHHHHHHTTTTS
T ss_pred CceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHh-------hccceEEEEeccHHH-HHHHHHHccCCC
Confidence 559999999999999999999999999999999999988775442 124689999998764 433332 34
Q ss_pred cccEEEEe
Q 025492 142 QLTKMFFL 149 (252)
Q Consensus 142 s~d~i~~~ 149 (252)
.+|.|.+.
T Consensus 93 ~~dgiL~D 100 (310)
T PF01795_consen 93 KVDGILFD 100 (310)
T ss_dssp -EEEEEEE
T ss_pred ccCEEEEc
Confidence 78888764
No 258
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.59 E-value=0.01 Score=50.53 Aligned_cols=80 Identities=14% Similarity=0.282 Sum_probs=50.6
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCC---CcccEEEEeCCcccccCccCCCCc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPG---QYQNISVVRTNSMKYIPNYFEKGQ 142 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~---~~~nv~~~~~da~~~l~~~~~~~s 142 (252)
.+.|||.=||-|.=++-+|.. +++|+|+|.|+.+......-+......... -..++.++++|+.+.|. .++.+
T Consensus 76 ~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~--~~~~s 151 (234)
T PF04445_consen 76 RPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR--QPDNS 151 (234)
T ss_dssp ---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC--CHSS-
T ss_pred CCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh--hcCCC
Confidence 358999999999999999976 679999999997665555444433221111 13589999999988776 56789
Q ss_pred ccEEEEe
Q 025492 143 LTKMFFL 149 (252)
Q Consensus 143 ~d~i~~~ 149 (252)
+|.||+.
T Consensus 152 ~DVVY~D 158 (234)
T PF04445_consen 152 FDVVYFD 158 (234)
T ss_dssp -SEEEE-
T ss_pred CCEEEEC
Confidence 9999984
No 259
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.54 E-value=0.002 Score=47.97 Aligned_cols=33 Identities=30% Similarity=0.479 Sum_probs=25.6
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHh
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDK 100 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~ 100 (252)
.+-.+|||||+|.+.--|.+. +..=.|+|....
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~R~R 91 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSE--GYPGWGIDARRR 91 (112)
T ss_pred CCceEEccCCchHHHHHHHhC--CCCccccccccc
Confidence 457999999999888777776 445589998653
No 260
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.49 E-value=0.00051 Score=57.09 Aligned_cols=94 Identities=21% Similarity=0.359 Sum_probs=56.9
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...+||+|.|.|+++..++..+. .+++.|.|..|+...+.+ .-+-+.-+...+.|.. ++....-+-+|.
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~fe--evyATElS~tMr~rL~kk-------~ynVl~~~ew~~t~~k--~dli~clNlLDR 181 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFE--EVYATELSWTMRDRLKKK-------NYNVLTEIEWLQTDVK--LDLILCLNLLDR 181 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHH--HHHHHHhhHHHHHHHhhc-------CCceeeehhhhhcCce--eehHHHHHHHHh
Confidence 34899999999999999999865 478999999987654331 0011122222222221 111111122222
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcC-CcEEEEEe
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGV-GGIIYTIT 187 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~Lkp-gG~l~~~t 187 (252)
.+ +|. .+|+.+..+|.| +|+++++-
T Consensus 182 c~----~p~-------------kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 182 CF----DPF-------------KLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred hc----ChH-------------HHHHHHHHHhccCCCcEEEEE
Confidence 22 332 499999999999 78887653
No 261
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.48 E-value=0.03 Score=53.06 Aligned_cols=116 Identities=16% Similarity=0.263 Sum_probs=78.0
Q ss_pred CceEEEEcCcccHHHHHHHHHCC----CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccC--
Q 025492 66 KIQFADIGCGFGGLLISLSTLFP----EVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYF-- 138 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p----~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~-- 138 (252)
...|.|..||+|.++...++... +..++|.|+++.....|.-+.--. +.. ++....+|.. .....
T Consensus 187 ~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lh------gi~~~~~i~~~dtl--~~~~~~~ 258 (489)
T COG0286 187 RNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILH------GIEGDANIRHGDTL--SNPKHDD 258 (489)
T ss_pred CCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHh------CCCccccccccccc--cCCcccc
Confidence 44899999999999988877642 377999999999988887765432 444 4666666653 22222
Q ss_pred --CCCcccEEEEeCCCC---ccccc----ccc-----ccc----cC-HHHHHHHHHhhcCCcEEEEEeCc
Q 025492 139 --EKGQLTKMFFLFPDP---HFKEK----NHR-----RRV----IS-PHLLDEYAYVLGVGGIIYTITDV 189 (252)
Q Consensus 139 --~~~s~d~i~~~fpdP---~~k~~----h~k-----rr~----~~-~~~l~~~~~~LkpgG~l~~~td~ 189 (252)
..+.+|.|..|.|.- |.... ... ... -. -.|++.+...|+|||+..++.+.
T Consensus 259 ~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~ 328 (489)
T COG0286 259 KDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPD 328 (489)
T ss_pred cCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecC
Confidence 346689999887753 33221 000 000 11 46999999999999887776654
No 262
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.30 E-value=0.021 Score=47.96 Aligned_cols=116 Identities=15% Similarity=0.064 Sum_probs=80.2
Q ss_pred eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEE
Q 025492 68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMF 147 (252)
Q Consensus 68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~ 147 (252)
.+.||||--|.+...|-+.++...+++.|+++..++.|.+++.+. ...+.+.+..+|.. ...-.++.+|.|+
T Consensus 19 ~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~-----~l~~~i~vr~~dgl---~~l~~~d~~d~iv 90 (226)
T COG2384 19 RIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKN-----NLSERIDVRLGDGL---AVLELEDEIDVIV 90 (226)
T ss_pred ceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhc-----CCcceEEEeccCCc---cccCccCCcCEEE
Confidence 499999999999999999999999999999999999998888654 34567888888863 2223355889988
Q ss_pred EeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcC
Q 025492 148 FLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENH 203 (252)
Q Consensus 148 ~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~ 203 (252)
+----. . .-..+|++-...|+.--+++++-.+.. .+..+.+..+
T Consensus 91 IAGMGG---------~-lI~~ILee~~~~l~~~~rlILQPn~~~--~~LR~~L~~~ 134 (226)
T COG2384 91 IAGMGG---------T-LIREILEEGKEKLKGVERLILQPNIHT--YELREWLSAN 134 (226)
T ss_pred EeCCcH---------H-HHHHHHHHhhhhhcCcceEEECCCCCH--HHHHHHHHhC
Confidence 753211 1 112466666666655456777655432 2334444443
No 263
>PRK11524 putative methyltransferase; Provisional
Probab=96.26 E-value=0.011 Score=52.04 Aligned_cols=46 Identities=13% Similarity=-0.046 Sum_probs=40.1
Q ss_pred CCCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHH
Q 025492 64 SKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILA 111 (252)
Q Consensus 64 ~~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~ 111 (252)
.++++|||-=||+|..+++..+. +.+++|+|++++.++.|..++..
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHh
Confidence 34679999999999999888877 77899999999999999888743
No 264
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.25 E-value=0.017 Score=48.33 Aligned_cols=103 Identities=15% Similarity=0.211 Sum_probs=48.5
Q ss_pred ceEEEEcCcccHHHHHHHHH----CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccc--cCcc--C
Q 025492 67 IQFADIGCGFGGLLISLSTL----FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKY--IPNY--F 138 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~----~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~--l~~~--~ 138 (252)
.+|+|+|.-.|..++.+|.. .+...|+|||++........ +... .-.++|.++++|..+. +... +
T Consensus 34 d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a--~e~h-----p~~~rI~~i~Gds~d~~~~~~v~~~ 106 (206)
T PF04989_consen 34 DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKA--IESH-----PMSPRITFIQGDSIDPEIVDQVREL 106 (206)
T ss_dssp SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-G--GGG---------TTEEEEES-SSSTHHHHTSGSS
T ss_pred CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHH--Hhhc-----cccCceEEEECCCCCHHHHHHHHHh
Confidence 48999999999999988764 37889999999654321110 1000 1126899999997521 1100 0
Q ss_pred -CCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025492 139 -EKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT 185 (252)
Q Consensus 139 -~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~ 185 (252)
....-..|+. |......| .-.-|+.+..+|++|+.+++
T Consensus 107 ~~~~~~vlVil---Ds~H~~~h------vl~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 107 ASPPHPVLVIL---DSSHTHEH------VLAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp ----SSEEEEE---SS----SS------HHHHHHHHHHT--TT-EEEE
T ss_pred hccCCceEEEE---CCCccHHH------HHHHHHHhCccCCCCCEEEE
Confidence 0111112221 22111111 12467779999999998865
No 265
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.20 E-value=0.018 Score=50.62 Aligned_cols=75 Identities=17% Similarity=0.329 Sum_probs=58.6
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCC-eEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCC---CC
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEV-LMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFE---KG 141 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~-~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~---~~ 141 (252)
..+.||.=.|.|.++..+..+.|+. .++|+|.++.+++.|++.+... .+++.+++.+... +...++ .+
T Consensus 24 ~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~-------~~r~~~v~~~F~~-l~~~l~~~~i~ 95 (314)
T COG0275 24 DGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF-------DGRVTLVHGNFAN-LAEALKELGIG 95 (314)
T ss_pred CcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc-------CCcEEEEeCcHHH-HHHHHHhcCCC
Confidence 4699999999999999999998855 5999999999999998876542 3689999988653 332222 35
Q ss_pred cccEEEE
Q 025492 142 QLTKMFF 148 (252)
Q Consensus 142 s~d~i~~ 148 (252)
.+|.|.+
T Consensus 96 ~vDGiL~ 102 (314)
T COG0275 96 KVDGILL 102 (314)
T ss_pred ceeEEEE
Confidence 7787764
No 266
>PRK13699 putative methylase; Provisional
Probab=96.19 E-value=0.016 Score=49.40 Aligned_cols=46 Identities=20% Similarity=0.185 Sum_probs=40.1
Q ss_pred CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHH
Q 025492 65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILAL 112 (252)
Q Consensus 65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~ 112 (252)
++.+|||-=||+|..+++..+. +.+++|+|+++..++.|.+++...
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHHHH
Confidence 3679999999999998888777 778999999999999998887664
No 267
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.15 E-value=0.21 Score=42.74 Aligned_cols=122 Identities=11% Similarity=0.038 Sum_probs=67.8
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
+..||=||=+. ..++++|...+...++.+||++..++..++..... +++ |+.++.|+...||..+ .+.+|.
T Consensus 45 gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~------gl~-i~~~~~DlR~~LP~~~-~~~fD~ 115 (243)
T PF01861_consen 45 GKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEE------GLP-IEAVHYDLRDPLPEEL-RGKFDV 115 (243)
T ss_dssp T-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHH------T---EEEE---TTS---TTT-SS-BSE
T ss_pred CCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHc------CCc-eEEEEecccccCCHHH-hcCCCE
Confidence 45799999554 55667777777889999999999999998877665 676 9999999886665433 478999
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCc-EEEEEeCchH--HH--HHHHHHHhcCCC
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGG-IIYTITDVEE--LG--DWMRSCLENHPM 205 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG-~l~~~td~~~--~~--~~~~~~~~~~~~ 205 (252)
++...| |-. ... .-|+......||..| ..++..-..+ .. ..+.+.+.+.++
T Consensus 116 f~TDPP--yT~-~G~------~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl 171 (243)
T PF01861_consen 116 FFTDPP--YTP-EGL------KLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGL 171 (243)
T ss_dssp EEE-----SSH-HHH------HHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--
T ss_pred EEeCCC--CCH-HHH------HHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCc
Confidence 887543 211 111 248889999998655 6566432222 32 345566665554
No 268
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.11 E-value=0.041 Score=49.79 Aligned_cols=96 Identities=19% Similarity=0.176 Sum_probs=66.0
Q ss_pred eEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC-CcccccCccCCC-Cccc
Q 025492 68 QFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT-NSMKYIPNYFEK-GQLT 144 (252)
Q Consensus 68 ~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~-da~~~l~~~~~~-~s~d 144 (252)
.|+=+|||. |.+++.+|+......++.+|+++..++.|++.. +.+-+..... +....+.. ... .-+|
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~---------g~~~~~~~~~~~~~~~~~~-~t~g~g~D 240 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG---------GADVVVNPSEDDAGAEILE-LTGGRGAD 240 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhC---------CCeEeecCccccHHHHHHH-HhCCCCCC
Confidence 899999998 888899999988889999999999998886532 2222222212 22111111 112 2578
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
.++-.-..+ ..+..+.+.+++||++.+.-
T Consensus 241 ~vie~~G~~--------------~~~~~ai~~~r~gG~v~~vG 269 (350)
T COG1063 241 VVIEAVGSP--------------PALDQALEALRPGGTVVVVG 269 (350)
T ss_pred EEEECCCCH--------------HHHHHHHHHhcCCCEEEEEe
Confidence 887654332 38899999999999999865
No 269
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.10 E-value=0.039 Score=50.35 Aligned_cols=114 Identities=15% Similarity=0.133 Sum_probs=65.0
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCC-cccccCccCCCCcc
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTN-SMKYIPNYFEKGQL 143 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~d-a~~~l~~~~~~~s~ 143 (252)
+..||.+|||. |..++.+|+......++++|.++...+.+++.. +...+.....+ ....+........+
T Consensus 185 g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---------~~~vi~~~~~~~~~~~l~~~~~~~~~ 255 (386)
T cd08283 185 GDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---------GAETINFEEVDDVVEALRELTGGRGP 255 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---------CcEEEcCCcchHHHHHHHHHcCCCCC
Confidence 45789999998 999999999975446999999998877665421 22212221221 21112222223357
Q ss_pred cEEEEeCCC-----Cccccccc--cccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025492 144 TKMFFLFPD-----PHFKEKNH--RRRVISPHLLDEYAYVLGVGGIIYTITD 188 (252)
Q Consensus 144 d~i~~~fpd-----P~~k~~h~--krr~~~~~~l~~~~~~LkpgG~l~~~td 188 (252)
|.|+-.... +|.+...+ ..+--....+.++.+.|+++|++++...
T Consensus 256 D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 256 DVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 776543211 11110000 0000123578889999999999988754
No 270
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=96.05 E-value=0.0075 Score=53.84 Aligned_cols=115 Identities=15% Similarity=0.077 Sum_probs=74.6
Q ss_pred CCCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHH-------HHHHHHHHhhcCCCC-cc-cEEEEeCCccccc
Q 025492 64 SKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEY-------VKERILALRVSNPGQ-YQ-NISVVRTNSMKYI 134 (252)
Q Consensus 64 ~~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~-------a~~~~~~~~~~~~~~-~~-nv~~~~~da~~~l 134 (252)
+++.+|+|-=-|+|.+++..|.- +..++|.||+-.++.. ..+|+.+. + .+ =+.++.+|...
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~F--Ga~viGtDIDyr~vragrg~~~si~aNFkQY------g~~~~fldvl~~D~sn-- 276 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHF--GAYVIGTDIDYRTVRAGRGEDESIKANFKQY------GSSSQFLDVLTADFSN-- 276 (421)
T ss_pred CCCCEEecCccccCceeeehhhh--cceeeccccchheeecccCCCcchhHhHHHh------CCcchhhheeeecccC--
Confidence 34679999999999999998887 7789999999988762 22333322 2 11 26677777642
Q ss_pred CccCCCCcccEEEEeCCC-------------------------CccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025492 135 PNYFEKGQLTKMFFLFPD-------------------------PHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD 188 (252)
Q Consensus 135 ~~~~~~~s~d~i~~~fpd-------------------------P~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td 188 (252)
+.+-....+|.|++..|= -.++..+...-.+-.++|.-.+++|..||++++-.+
T Consensus 277 ~~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 277 PPLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred cchhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 222335678998875541 111111222222334678888999999999988543
No 271
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.05 E-value=0.025 Score=48.23 Aligned_cols=104 Identities=16% Similarity=0.138 Sum_probs=69.9
Q ss_pred CCceEEEEcCcccHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025492 65 KKIQFADIGCGFGGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL 143 (252)
Q Consensus 65 ~~~~vLDIGcG~G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~ 143 (252)
+...||=+|.++|......+.. .|+..|++||.|...=.. .+.-. ..-+||--+.-||...-..-.--.-+
T Consensus 156 pGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRd---L~nmA-----kkRtNiiPIiEDArhP~KYRmlVgmV 227 (317)
T KOG1596|consen 156 PGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRD---LINMA-----KKRTNIIPIIEDARHPAKYRMLVGMV 227 (317)
T ss_pred CCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHH---HHHHh-----hccCCceeeeccCCCchheeeeeeeE
Confidence 3568999999999999999988 688899999999853211 11111 24579999999987321111112467
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
|.||...+.|-.- | -+.-.....||+||.|++.
T Consensus 228 DvIFaDvaqpdq~------R----ivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 228 DVIFADVAQPDQA------R----IVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred EEEeccCCCchhh------h----hhhhhhhhhhccCCeEEEE
Confidence 8887766554311 1 2344567789999998885
No 272
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.99 E-value=0.013 Score=48.73 Aligned_cols=39 Identities=23% Similarity=0.223 Sum_probs=32.2
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHH
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVK 106 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~ 106 (252)
+.+|||.=||+|..+.+..+. +.+++|+|+++..++.|+
T Consensus 192 gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 192 GDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp T-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHH
T ss_pred ceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhc
Confidence 679999999999998888887 678999999999888775
No 273
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.96 E-value=0.0071 Score=51.22 Aligned_cols=121 Identities=20% Similarity=0.240 Sum_probs=72.5
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCCc----cccCCCCCCCCCccCCCCCceEEEEcCcccHHHHHHHHHCCCCeEEE
Q 025492 19 KRFYRARAHSNPLSDSHFPVPISPSHVDY----SLHYPHFFPPADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIG 94 (252)
Q Consensus 19 ~~~~~~r~~~np~~~~~~~~~~~~~~~~w----~~~f~~~~~~~~~~~~~~~~~vLDIGcG~G~~~~~lA~~~p~~~~iG 94 (252)
.+||..|.+. .++. .-.|..|+..+. +++..... ++. ...+-++||||.|.-.+---+..+.=+..|+|
T Consensus 35 ~~fY~v~~wd--iPeg-~LCPpvPgRAdYih~laDLL~s~~---g~~-~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvG 107 (292)
T COG3129 35 AHFYAVRYWD--IPEG-FLCPPVPGRADYIHHLADLLASTS---GQI-PGKNIRILDIGVGANCIYPLIGVHEYGWRFVG 107 (292)
T ss_pred HHhcceeEec--CCCC-CcCCCCCChhHHHHHHHHHHHhcC---CCC-CcCceEEEeeccCcccccccccceeecceeec
Confidence 4677666664 3333 224555655543 33333221 111 13456899999998877666666655789999
Q ss_pred EecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeC-CcccccCccCC-CCcccEEEEeCC
Q 025492 95 MELRDKVTEYVKERILALRVSNPGQYQ-NISVVRT-NSMKYIPNYFE-KGQLTKMFFLFP 151 (252)
Q Consensus 95 iDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~-da~~~l~~~~~-~~s~d~i~~~fp 151 (252)
.|+++.+++.|+..+... .++. .+++... |-...++.... .+.+|...+|.|
T Consensus 108 seid~~sl~sA~~ii~~N-----~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPP 162 (292)
T COG3129 108 SEIDSQSLSSAKAIISAN-----PGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPP 162 (292)
T ss_pred CccCHHHHHHHHHHHHcC-----cchhhheeEEeccCccccccccccccceeeeEecCCC
Confidence 999999999998877542 1232 2555442 32223443333 567888887765
No 274
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=95.90 E-value=0.013 Score=50.76 Aligned_cols=114 Identities=12% Similarity=0.071 Sum_probs=64.0
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhc-------------CCCC---------c-cc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVS-------------NPGQ---------Y-QN 122 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~-------------~~~~---------~-~n 122 (252)
..++||||||.-.+-..-|..+ -.+++..|..+.-++..++.++.. .. .... + ..
T Consensus 57 g~~llDiGsGPtiy~~lsa~~~-f~~I~l~dy~~~N~~el~kWl~~~-~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 57 GETLLDIGSGPTIYQLLSACEW-FEEIVLSDYSEQNREELEKWLRKE-GAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp EEEEEEES-TT--GGGTTGGGT-EEEEEEEESSHHHHHHHHHHHTT--TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHhhhhHHHh-hcceEEeeccHhhHHHHHHHHCCC-CCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 4589999999965543333222 336899999998777666554322 11 0000 0 12
Q ss_pred E-EEEeCCcccccCccCCC-----CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 123 I-SVVRTNSMKYIPNYFEK-----GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 123 v-~~~~~da~~~l~~~~~~-----~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
| +++.+|+.. ++.+.+ ..+|.|...|.---.-+. +-.....++.+.++|||||.|++..
T Consensus 135 Vk~Vv~cDV~~--~~pl~~~~~~p~~~D~v~s~fcLE~a~~d----~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 135 VKQVVPCDVTQ--PNPLDPPVVLPPKFDCVISSFCLESACKD----LDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp EEEEEE--TTS--SSTTTTS-SS-SSEEEEEEESSHHHH-SS----HHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hceEEEeeccC--CCCCCccccCccchhhhhhhHHHHHHcCC----HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 3 477888853 233433 358988887742111111 1123458999999999999999864
No 275
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.70 E-value=0.11 Score=46.73 Aligned_cols=92 Identities=16% Similarity=0.201 Sum_probs=62.1
Q ss_pred CceEEEEcCc-ccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC-CcccccCccCCCCcc
Q 025492 66 KIQFADIGCG-FGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT-NSMKYIPNYFEKGQL 143 (252)
Q Consensus 66 ~~~vLDIGcG-~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~-da~~~l~~~~~~~s~ 143 (252)
...|+=+|+| -|.+++.+|+..- .+++++|++++-.+.|++. +.+. ++.. |.. .+.. . .+.+
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~l----------GAd~--~i~~~~~~-~~~~-~-~~~~ 230 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKL----------GADH--VINSSDSD-ALEA-V-KEIA 230 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHh----------CCcE--EEEcCCch-hhHH-h-HhhC
Confidence 4566666665 5788899999764 8999999999987777642 3332 2221 221 1221 1 1238
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD 188 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td 188 (252)
|.|+..-+ + ..+..+.+.|++||++++.-.
T Consensus 231 d~ii~tv~-~--------------~~~~~~l~~l~~~G~~v~vG~ 260 (339)
T COG1064 231 DAIIDTVG-P--------------ATLEPSLKALRRGGTLVLVGL 260 (339)
T ss_pred cEEEECCC-h--------------hhHHHHHHHHhcCCEEEEECC
Confidence 88887765 3 388899999999999998753
No 276
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.68 E-value=0.063 Score=45.74 Aligned_cols=111 Identities=16% Similarity=0.098 Sum_probs=68.7
Q ss_pred CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEE-EeCCcccccCccCCCCcc
Q 025492 65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISV-VRTNSMKYIPNYFEKGQL 143 (252)
Q Consensus 65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~-~~~da~~~l~~~~~~~s~ 143 (252)
++.++||||+-+|.|+..+.++. ...++|||+.-..+.+- ++ .-++|.. -+.|+...-+..+.. ..
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~k---LR--------~d~rV~~~E~tN~r~l~~~~~~~-~~ 145 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWK---LR--------NDPRVIVLERTNVRYLTPEDFTE-KP 145 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHh---Hh--------cCCcEEEEecCChhhCCHHHccc-CC
Confidence 35699999999999999999885 45799999988765442 21 2334433 345655322222322 44
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHh
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLE 201 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~ 201 (252)
|.+++.-+.=- -..+|-.+..+|+++|.++... ...++...+.+.
T Consensus 146 d~~v~DvSFIS-----------L~~iLp~l~~l~~~~~~~v~Lv--KPQFEagr~~v~ 190 (245)
T COG1189 146 DLIVIDVSFIS-----------LKLILPALLLLLKDGGDLVLLV--KPQFEAGREQVG 190 (245)
T ss_pred CeEEEEeehhh-----------HHHHHHHHHHhcCCCceEEEEe--cchhhhhhhhcC
Confidence 55554321100 1247788888999998877643 455666666554
No 277
>PRK11524 putative methyltransferase; Provisional
Probab=95.60 E-value=0.021 Score=50.18 Aligned_cols=72 Identities=14% Similarity=0.120 Sum_probs=47.4
Q ss_pred ccEEEEeCCcccccCccCCCCcccEEEEeCCCCccccc--ccc----cc--ccCHHHHHHHHHhhcCCcEEEEEeCchHH
Q 025492 121 QNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEK--NHR----RR--VISPHLLDEYAYVLGVGGIIYTITDVEEL 192 (252)
Q Consensus 121 ~nv~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~--h~k----rr--~~~~~~l~~~~~~LkpgG~l~~~td~~~~ 192 (252)
.+.+++++|+.+.+. .++++++|.|+++.|=.-.+.. ... .+ -....++.++.++|||||.|++..+...+
T Consensus 7 ~~~~i~~gD~~~~l~-~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~~~ 85 (284)
T PRK11524 7 EAKTIIHGDALTELK-KIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNSTENM 85 (284)
T ss_pred CCCEEEeccHHHHHH-hcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchhh
Confidence 456789999987553 4678899999987552110000 000 00 00146889999999999999998877544
Q ss_pred H
Q 025492 193 G 193 (252)
Q Consensus 193 ~ 193 (252)
.
T Consensus 86 ~ 86 (284)
T PRK11524 86 P 86 (284)
T ss_pred h
Confidence 3
No 278
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=95.59 E-value=0.025 Score=52.10 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=43.8
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT 128 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~ 128 (252)
...|||||+|+|.+++..++...+ .++++|....|.+.|++...+ ..-.++|.++.-
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~k-----ng~SdkI~vInk 123 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHK-----NGMSDKINVINK 123 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhc-----CCCccceeeecc
Confidence 458999999999999988888754 599999999999988765433 233456766653
No 279
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=95.52 E-value=0.05 Score=45.02 Aligned_cols=69 Identities=10% Similarity=0.106 Sum_probs=51.3
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
+..|||+|+|+|..++..|+.. ...++..|+.+..+..+.-|... +.-++.++..|.. ..+..+|.
T Consensus 80 gkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~a-------ngv~i~~~~~d~~------g~~~~~Dl 145 (218)
T COG3897 80 GKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAA-------NGVSILFTHADLI------GSPPAFDL 145 (218)
T ss_pred cceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhh-------ccceeEEeecccc------CCCcceeE
Confidence 4589999999999999888885 45789999998777655555433 2346888888864 13667888
Q ss_pred EEE
Q 025492 146 MFF 148 (252)
Q Consensus 146 i~~ 148 (252)
+..
T Consensus 146 ~La 148 (218)
T COG3897 146 LLA 148 (218)
T ss_pred EEe
Confidence 864
No 280
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=95.52 E-value=0.14 Score=43.94 Aligned_cols=110 Identities=10% Similarity=0.144 Sum_probs=71.6
Q ss_pred CceEEEEcCcccHHHHHHHHHCC----CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCC
Q 025492 66 KIQFADIGCGFGGLLISLSTLFP----EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKG 141 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p----~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~ 141 (252)
....+|+|+|+-.=+..|...+. -.+++.||+|...++...+.+... ..++ .+.-+.+|....|.. ++ +
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~----y~~l-~v~~l~~~~~~~La~-~~-~ 151 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILRE----YPGL-EVNALCGDYELALAE-LP-R 151 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHh----CCCC-eEeehhhhHHHHHhc-cc-C
Confidence 45899999999887776666543 378999999999886655444331 1222 356667776544432 22 3
Q ss_pred cccEEEEeC--------CCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHH
Q 025492 142 QLTKMFFLF--------PDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGD 194 (252)
Q Consensus 142 s~d~i~~~f--------pdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~ 194 (252)
.-..++++. |++ ...|+.++...|.||-.+.+-+|-..-++
T Consensus 152 ~~~Rl~~flGStlGN~tp~e------------~~~Fl~~l~~a~~pGd~~LlGvDl~k~Ae 200 (321)
T COG4301 152 GGRRLFVFLGSTLGNLTPGE------------CAVFLTQLRGALRPGDYFLLGVDLRKPAE 200 (321)
T ss_pred CCeEEEEEecccccCCChHH------------HHHHHHHHHhcCCCcceEEEeccccCHHH
Confidence 333444321 222 23599999999999999999888644333
No 281
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=95.28 E-value=0.029 Score=52.34 Aligned_cols=132 Identities=14% Similarity=0.136 Sum_probs=87.8
Q ss_pred CCCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccC----C
Q 025492 64 SKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYF----E 139 (252)
Q Consensus 64 ~~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~----~ 139 (252)
.+...+|=||=|.|.+...+....|...+++||+++.|++.|...+.-.+ ....++.-.|..+++.... .
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q------~~r~~V~i~dGl~~~~~~~k~~~~ 367 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ------SDRNKVHIADGLDFLQRTAKSQQE 367 (482)
T ss_pred cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh------hhhhhhhHhhchHHHHHHhhcccc
Confidence 34567888999999999999999999999999999999999988775442 1123344444433332211 2
Q ss_pred CCcccEEEEeC--CCCccccccccccccCHHHHHHHHHhhcCCcEEEE--EeCchHHHHHHHHHHhc
Q 025492 140 KGQLTKMFFLF--PDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT--ITDVEELGDWMRSCLEN 202 (252)
Q Consensus 140 ~~s~d~i~~~f--pdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~--~td~~~~~~~~~~~~~~ 202 (252)
+..+|.+.+.- +|+.--. -..--.+...++..+...|.|-|.+.+ +|-+..+...+...+..
T Consensus 368 ~~~~dvl~~dvds~d~~g~~-~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~~ 433 (482)
T KOG2352|consen 368 DICPDVLMVDVDSKDSHGMQ-CPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLAK 433 (482)
T ss_pred ccCCcEEEEECCCCCcccCc-CCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhhh
Confidence 45677777543 2311100 011123456788999999999998866 67777777777776653
No 282
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.25 E-value=0.029 Score=50.36 Aligned_cols=108 Identities=16% Similarity=0.193 Sum_probs=61.8
Q ss_pred eEEEEcCcccHHHHHHHHHCCCC-eEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025492 68 QFADIGCGFGGLLISLSTLFPEV-LMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM 146 (252)
Q Consensus 68 ~vLDIGcG~G~~~~~lA~~~p~~-~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i 146 (252)
.+||+|.|.|.-+.++-..+|+. ..+-+|.|+..-+ ....+... ........-..|+.+.....-+..+++.+
T Consensus 116 siLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrk-V~~tl~~n-----v~t~~td~r~s~vt~dRl~lp~ad~ytl~ 189 (484)
T COG5459 116 SILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRK-VGDTLAEN-----VSTEKTDWRASDVTEDRLSLPAADLYTLA 189 (484)
T ss_pred hhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHH-HHHHHHhh-----cccccCCCCCCccchhccCCCccceeehh
Confidence 49999999999999999999976 4566777775432 22222221 11111112222322111111224556666
Q ss_pred EEe---CCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025492 147 FFL---FPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV 189 (252)
Q Consensus 147 ~~~---fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~ 189 (252)
++. .|+--.|. -...++.+-.++.|||.|+|+-.-
T Consensus 190 i~~~eLl~d~~ek~--------i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 190 IVLDELLPDGNEKP--------IQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred hhhhhhccccCcch--------HHHHHHHHHHhccCCCeEEEEeCC
Confidence 543 23332221 114889999999999999998643
No 283
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.14 E-value=0.41 Score=41.22 Aligned_cols=123 Identities=17% Similarity=0.191 Sum_probs=67.0
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccCCCCc-cc
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYFEKGQ-LT 144 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~~~~s-~d 144 (252)
-.|||+|+|+|-.++..|... ..+|.--|...... .-..+...... .-++.. ++.+...+....++..+.... +|
T Consensus 88 ~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~~~~-~L~~~~~~~~~-~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 88 INVLELGSGTGLVGILAALLL-GAEVVLTDLPKVVE-NLKFNRDKNNI-ALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred eeEEEecCCccHHHHHHHHHh-cceeccCCchhhHH-HHHHhhhhhhh-hhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 469999999997777777653 55777667654332 22222111100 001111 333333332222221122222 77
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHH
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCL 200 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~ 200 (252)
.|+. .|.+....+ -..++..++..|..+|.+++.+.-++-..|-.+.+
T Consensus 165 lila--sDvvy~~~~------~e~Lv~tla~ll~~~~~i~l~~~lr~~~~~~~~~~ 212 (248)
T KOG2793|consen 165 LILA--SDVVYEEES------FEGLVKTLAFLLAKDGTIFLAYPLRRDAAWEIEVL 212 (248)
T ss_pred EEEE--eeeeecCCc------chhHHHHHHHHHhcCCeEEEEEecccchHHHHHHH
Confidence 7764 244443332 23699999999999999999998766555554444
No 284
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=95.13 E-value=0.041 Score=41.77 Aligned_cols=89 Identities=18% Similarity=0.169 Sum_probs=60.2
Q ss_pred cccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEe-CCcccccCccCCCCcccEEEEeCCCC
Q 025492 75 GFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVR-TNSMKYIPNYFEKGQLTKMFFLFPDP 153 (252)
Q Consensus 75 G~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~-~da~~~l~~~~~~~s~d~i~~~fpdP 153 (252)
|.|.+++.+|+... .+++++|.++..++.+++ + +...+-... .|..+.+........+|.|+-....
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~----~------Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~- 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKE----L------GADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS- 68 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHH----T------TESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSS-
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHh----h------cccccccccccccccccccccccccceEEEEecCc-
Confidence 56899999999986 999999999987776653 1 433221111 1222233333334468888765432
Q ss_pred ccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025492 154 HFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD 188 (252)
Q Consensus 154 ~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td 188 (252)
...++....+|+++|++.+..-
T Consensus 69 -------------~~~~~~~~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 69 -------------GDTLQEAIKLLRPGGRIVVVGV 90 (130)
T ss_dssp -------------HHHHHHHHHHEEEEEEEEEESS
T ss_pred -------------HHHHHHHHHHhccCCEEEEEEc
Confidence 3589999999999999999764
No 285
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=94.79 E-value=0.17 Score=44.25 Aligned_cols=74 Identities=18% Similarity=0.212 Sum_probs=50.9
Q ss_pred eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEE
Q 025492 68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMF 147 (252)
Q Consensus 68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~ 147 (252)
.++|+-||.|.+...+.... -..+.++|+++.+++..+.+. ++. ++.+|+.+.....+ ...+|.++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G-~~~v~a~e~~~~a~~~~~~N~-----------~~~-~~~~Di~~~~~~~~-~~~~D~l~ 67 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG-FEIVAANEIDKSAAETYEANF-----------PNK-LIEGDITKIDEKDF-IPDIDLLT 67 (275)
T ss_pred cEEEEccCcchHHHHHHHcC-CEEEEEEeCCHHHHHHHHHhC-----------CCC-CccCccccCchhhc-CCCCCEEE
Confidence 48999999999988888774 335789999998876554432 222 56677764322111 34689999
Q ss_pred EeCCCCcc
Q 025492 148 FLFPDPHF 155 (252)
Q Consensus 148 ~~fpdP~~ 155 (252)
..+|..-+
T Consensus 68 ~gpPCq~f 75 (275)
T cd00315 68 GGFPCQPF 75 (275)
T ss_pred eCCCChhh
Confidence 98875543
No 286
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=94.64 E-value=0.071 Score=44.81 Aligned_cols=119 Identities=16% Similarity=0.163 Sum_probs=65.6
Q ss_pred ceEEEEcCcccHHHHHHHHHCCC--CeEEEEecCHhHHHHHHHHHHHHhhc-----------------------------
Q 025492 67 IQFADIGCGFGGLLISLSTLFPE--VLMIGMELRDKVTEYVKERILALRVS----------------------------- 115 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~--~~~iGiDis~~~i~~a~~~~~~~~~~----------------------------- 115 (252)
-.+-|-+||+|.++.-++-.+++ .+++|.||++++++.|++|+..++..
T Consensus 53 ~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA~ 132 (246)
T PF11599_consen 53 YTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESAD 132 (246)
T ss_dssp EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred eeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 37999999999999998888765 37999999999999999886432110
Q ss_pred -------CCCCcccEEEEeCCcccc--cCccCCCCcccEEEEeCC----CCccccccccccccCHHHHHHHHHhhcCCcE
Q 025492 116 -------NPGQYQNISVVRTNSMKY--IPNYFEKGQLTKMFFLFP----DPHFKEKNHRRRVISPHLLDEYAYVLGVGGI 182 (252)
Q Consensus 116 -------~~~~~~nv~~~~~da~~~--l~~~~~~~s~d~i~~~fp----dP~~k~~h~krr~~~~~~l~~~~~~LkpgG~ 182 (252)
..++..-..+.+.|+.+- +...-.....|.|+...| ..|...... --...+|+.++.+|-.+++
T Consensus 133 RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~---~p~~~ml~~l~~vLp~~sV 209 (246)
T PF11599_consen 133 RLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSG---GPVAQMLNSLAPVLPERSV 209 (246)
T ss_dssp HHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---H---HHHHHHHHHHHCCS-TT-E
T ss_pred HHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCC---CcHHHHHHHHHhhCCCCcE
Confidence 111222355666665420 000011233577776655 334321110 0134699999999954555
Q ss_pred EEEEeCc
Q 025492 183 IYTITDV 189 (252)
Q Consensus 183 l~~~td~ 189 (252)
+.+ ||-
T Consensus 210 V~v-~~k 215 (246)
T PF11599_consen 210 VAV-SDK 215 (246)
T ss_dssp EEE-EES
T ss_pred EEE-ecC
Confidence 555 653
No 287
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=94.51 E-value=0.28 Score=43.54 Aligned_cols=36 Identities=28% Similarity=0.270 Sum_probs=30.2
Q ss_pred CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHH
Q 025492 65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVT 102 (252)
Q Consensus 65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i 102 (252)
+++.||--|||.|.++..||...+. .-|=|.|-=|+
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~--~qGNEfSy~Ml 185 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFK--CQGNEFSYFML 185 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhccc--ccccHHHHHHH
Confidence 4679999999999999999999664 45668888775
No 288
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=94.39 E-value=0.14 Score=42.48 Aligned_cols=111 Identities=15% Similarity=0.075 Sum_probs=62.8
Q ss_pred CceEEEEcCcccHHHHHHHHH-CCCCeEEEEecCHhH---HHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCC
Q 025492 66 KIQFADIGCGFGGLLISLSTL-FPEVLMIGMELRDKV---TEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKG 141 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~-~p~~~~iGiDis~~~---i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~ 141 (252)
...|+|+=-|.|.++.-++.. .|...|+++=..+.. ..... ++... ..+....|+..+..+.. .+ ++++
T Consensus 49 g~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~-r~~~~--~~e~~~aN~e~~~~~~~-A~---~~pq 121 (238)
T COG4798 49 GATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGP-RLNAA--AREPVYANVEVIGKPLV-AL---GAPQ 121 (238)
T ss_pred CCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhh-hhhhh--hhhhhhhhhhhhCCccc-cc---CCCC
Confidence 569999999999999999987 455566665433221 11100 11110 12235567777666643 22 2455
Q ss_pred cccEEEEe--CCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 142 QLTKMFFL--FPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 142 s~d~i~~~--fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
.+|.+..+ +-|-..+.-| --+-..+.+.+.+.|||||.+.+.
T Consensus 122 ~~d~~~~~~~yhdmh~k~i~---~~~A~~vna~vf~~LKPGGv~~V~ 165 (238)
T COG4798 122 KLDLVPTAQNYHDMHNKNIH---PATAAKVNAAVFKALKPGGVYLVE 165 (238)
T ss_pred cccccccchhhhhhhccccC---cchHHHHHHHHHHhcCCCcEEEEE
Confidence 66666542 1111111111 112345888999999999999874
No 289
>PRK13699 putative methylase; Provisional
Probab=94.33 E-value=0.13 Score=43.71 Aligned_cols=80 Identities=10% Similarity=0.053 Sum_probs=48.2
Q ss_pred EEEEeCCcccccCccCCCCcccEEEEeCCCCccccccccccc-------cCHHHHHHHHHhhcCCcEEEEEeCchHHHHH
Q 025492 123 ISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRV-------ISPHLLDEYAYVLGVGGIIYTITDVEELGDW 195 (252)
Q Consensus 123 v~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~-------~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~ 195 (252)
.+++++|+.+.+. .++++++|.|+...|=---.+.+..+.+ -...++.++.|+|||||.+++-+++.... .
T Consensus 2 ~~l~~gD~le~l~-~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~~~-~ 79 (227)
T PRK13699 2 SRFILGNCIDVMA-RFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRVD-R 79 (227)
T ss_pred CeEEechHHHHHH-hCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccccHH-H
Confidence 4678899987665 4889999999875431100011111111 01367899999999999998866654332 2
Q ss_pred HHHHHhcCC
Q 025492 196 MRSCLENHP 204 (252)
Q Consensus 196 ~~~~~~~~~ 204 (252)
....+...+
T Consensus 80 ~~~al~~~G 88 (227)
T PRK13699 80 FMAAWKNAG 88 (227)
T ss_pred HHHHHHHCC
Confidence 334444444
No 290
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.24 E-value=0.61 Score=34.58 Aligned_cols=99 Identities=13% Similarity=0.120 Sum_probs=65.1
Q ss_pred CcccHHHHHHHHHC--CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccc--cCccCCCCcccEEEEe
Q 025492 74 CGFGGLLISLSTLF--PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKY--IPNYFEKGQLTKMFFL 149 (252)
Q Consensus 74 cG~G~~~~~lA~~~--p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~--l~~~~~~~s~d~i~~~ 149 (252)
||.|.++..+++.. .+..++.+|.+++.++.+.. .+ +.++.+|+.+. |. -..-...+.+++.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----------~~---~~~i~gd~~~~~~l~-~a~i~~a~~vv~~ 69 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----------EG---VEVIYGDATDPEVLE-RAGIEKADAVVIL 69 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----------TT---SEEEES-TTSHHHHH-HTTGGCESEEEEE
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----------cc---cccccccchhhhHHh-hcCccccCEEEEc
Confidence 56677887777762 23479999999987655432 13 66889998642 11 1223567888888
Q ss_pred CCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHH
Q 025492 150 FPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMR 197 (252)
Q Consensus 150 fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~ 197 (252)
.++.-. .-.+....+.+-|...++...+++++...+.
T Consensus 70 ~~~d~~-----------n~~~~~~~r~~~~~~~ii~~~~~~~~~~~l~ 106 (116)
T PF02254_consen 70 TDDDEE-----------NLLIALLARELNPDIRIIARVNDPENAELLR 106 (116)
T ss_dssp SSSHHH-----------HHHHHHHHHHHTTTSEEEEEESSHHHHHHHH
T ss_pred cCCHHH-----------HHHHHHHHHHHCCCCeEEEEECCHHHHHHHH
Confidence 776532 1355566777889999999998888866553
No 291
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=93.97 E-value=0.34 Score=44.45 Aligned_cols=88 Identities=13% Similarity=0.094 Sum_probs=46.1
Q ss_pred ceEEEEcCcccHHHHHHHH--------H-------CCCCeEEEEecCHhHHHHHHHHHHHHhhc----CC----CCcccE
Q 025492 67 IQFADIGCGFGGLLISLST--------L-------FPEVLMIGMELRDKVTEYVKERILALRVS----NP----GQYQNI 123 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~--------~-------~p~~~~iGiDis~~~i~~a~~~~~~~~~~----~~----~~~~nv 123 (252)
-.|+|+|||+|..++.+.. + .|+..++--|.-.+=....-+.+...+.. .. .+. +-
T Consensus 65 ~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~-~~ 143 (386)
T PLN02668 65 FTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGH-RS 143 (386)
T ss_pred eeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCC-Cc
Confidence 3799999999977654422 1 24677777776544222222222211100 00 011 11
Q ss_pred EEEeCCcccccCccCCCCcccEEEEeCCCCcc
Q 025492 124 SVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHF 155 (252)
Q Consensus 124 ~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~ 155 (252)
.|+.+-..-+-...||+++++.++..+.-.|-
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWL 175 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWL 175 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceec
Confidence 23332222233566899999999877655553
No 292
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.76 E-value=0.11 Score=48.68 Aligned_cols=106 Identities=11% Similarity=0.154 Sum_probs=79.5
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCC-eEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccC-ccCCCCc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEV-LMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIP-NYFEKGQ 142 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~-~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~-~~~~~~s 142 (252)
...|||.=|++|.-++..|...|+. .+++-|.++.+++..++++... +. +-|...+.||...+- ..-....
T Consensus 110 ~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N------~v~~ive~~~~DA~~lM~~~~~~~~~ 183 (525)
T KOG1253|consen 110 SLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELN------GVEDIVEPHHSDANVLMYEHPMVAKF 183 (525)
T ss_pred cchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhc------CchhhcccccchHHHHHHhccccccc
Confidence 4589999999999999999998875 6899999999999888887542 33 336677788764321 1122468
Q ss_pred ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE-eCc
Q 025492 143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI-TDV 189 (252)
Q Consensus 143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~-td~ 189 (252)
||.|.+ ||+-. ...||+.+.+.+..||.+.++ ||-
T Consensus 184 FDvIDL---DPyGs---------~s~FLDsAvqav~~gGLL~vT~TD~ 219 (525)
T KOG1253|consen 184 FDVIDL---DPYGS---------PSPFLDSAVQAVRDGGLLCVTCTDM 219 (525)
T ss_pred cceEec---CCCCC---------ccHHHHHHHHHhhcCCEEEEEecch
Confidence 999987 45421 225999999999999999874 554
No 293
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=93.63 E-value=0.11 Score=43.60 Aligned_cols=88 Identities=15% Similarity=0.294 Sum_probs=57.1
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccc-cCccCCCCcccE
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKY-IPNYFEKGQLTK 145 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~-l~~~~~~~s~d~ 145 (252)
-.+|||||=+....... .+-..++.||+++. .=.+.+.|..+. ++. -+.+.||.
T Consensus 53 lrlLEVGals~~N~~s~---~~~fdvt~IDLns~---------------------~~~I~qqDFm~rplp~-~~~e~Fdv 107 (219)
T PF11968_consen 53 LRLLEVGALSTDNACST---SGWFDVTRIDLNSQ---------------------HPGILQQDFMERPLPK-NESEKFDV 107 (219)
T ss_pred ceEEeecccCCCCcccc---cCceeeEEeecCCC---------------------CCCceeeccccCCCCC-CcccceeE
Confidence 48999999876544443 34456999998752 122445565431 111 23567887
Q ss_pred EEE----eC-CCCccccccccccccCHHHHHHHHHhhcCCcE-----EEEEeCc
Q 025492 146 MFF----LF-PDPHFKEKNHRRRVISPHLLDEYAYVLGVGGI-----IYTITDV 189 (252)
Q Consensus 146 i~~----~f-pdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~-----l~~~td~ 189 (252)
|.+ || |+|- .|. +.+..+++.|+|+|. ++++++.
T Consensus 108 Is~SLVLNfVP~p~--~RG--------~Ml~r~~~fL~~~g~~~~~~LFlVlP~ 151 (219)
T PF11968_consen 108 ISLSLVLNFVPDPK--QRG--------EMLRRAHKFLKPPGLSLFPSLFLVLPL 151 (219)
T ss_pred EEEEEEEeeCCCHH--HHH--------HHHHHHHHHhCCCCccCcceEEEEeCc
Confidence 753 44 6654 333 599999999999999 9998753
No 294
>PHA01634 hypothetical protein
Probab=93.43 E-value=0.22 Score=38.45 Aligned_cols=44 Identities=11% Similarity=0.095 Sum_probs=37.6
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHH
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERIL 110 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~ 110 (252)
+.+|+|||.+-|..++.++.+. ...|+++|.++...+...++++
T Consensus 29 ~KtV~dIGA~iGdSaiYF~l~G-AK~Vva~E~~~kl~k~~een~k 72 (156)
T PHA01634 29 QRTIQIVGADCGSSALYFLLRG-ASFVVQYEKEEKLRKKWEEVCA 72 (156)
T ss_pred CCEEEEecCCccchhhHHhhcC-ccEEEEeccCHHHHHHHHHHhh
Confidence 4589999999999999999985 4579999999998887777654
No 295
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=93.15 E-value=0.34 Score=42.63 Aligned_cols=120 Identities=17% Similarity=0.125 Sum_probs=69.3
Q ss_pred eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEE
Q 025492 68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMF 147 (252)
Q Consensus 68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~ 147 (252)
.++|+-||.|.+...+.+.. -..+.++|+++.+++.-+.|. . ....+|+.+.-...++. .+|.++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~---------~----~~~~~Di~~~~~~~l~~-~~D~l~ 66 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANF---------P----EVICGDITEIDPSDLPK-DVDLLI 66 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHH---------T----EEEESHGGGCHHHHHHH-T-SEEE
T ss_pred cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhcc---------c----ccccccccccccccccc-cceEEE
Confidence 58999999999999999985 336899999998766544432 2 77788887533333554 699999
Q ss_pred EeCCCCccc-cccc-----cccccCHHHHHHHHHhhcCCcEEEEEeCc--------hHHHHHHHHHHhcCCC
Q 025492 148 FLFPDPHFK-EKNH-----RRRVISPHLLDEYAYVLGVGGIIYTITDV--------EELGDWMRSCLENHPM 205 (252)
Q Consensus 148 ~~fpdP~~k-~~h~-----krr~~~~~~l~~~~~~LkpgG~l~~~td~--------~~~~~~~~~~~~~~~~ 205 (252)
.-+|..-+. .... .|.-+-..+++.+ ..++|.-.| + -++ ...+..+.+.|.+.++
T Consensus 67 ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v-~~~~Pk~~~-~-ENV~~l~~~~~~~~~~~i~~~l~~lGY 135 (335)
T PF00145_consen 67 GGPPCQGFSIAGKRKGFDDPRNSLFFEFLRIV-KELKPKYFL-L-ENVPGLLSSKNGEVFKEILEELEELGY 135 (335)
T ss_dssp EE---TTTSTTSTHHCCCCHTTSHHHHHHHHH-HHHS-SEEE-E-EEEGGGGTGGGHHHHHHHHHHHHHTTE
T ss_pred eccCCceEeccccccccccccchhhHHHHHHH-hhccceEEE-e-cccceeeccccccccccccccccccce
Confidence 988755433 2211 1111112233333 345674322 2 222 3467778888877654
No 296
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=92.87 E-value=0.18 Score=43.44 Aligned_cols=106 Identities=14% Similarity=0.110 Sum_probs=58.2
Q ss_pred ceEEEEcCcccHHHHHHHHH-----CCCCeEEEEecCHhH----------------------HHHHHHHHHHHhhcCCCC
Q 025492 67 IQFADIGCGFGGLLISLSTL-----FPEVLMIGMELRDKV----------------------TEYVKERILALRVSNPGQ 119 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~-----~p~~~~iGiDis~~~----------------------i~~a~~~~~~~~~~~~~~ 119 (252)
.-|+|.||=.|..++.++.. .++..+++.|--+.+ +....+.+.+ .....+
T Consensus 76 GdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~--n~~~~g 153 (248)
T PF05711_consen 76 GDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRE--NFARYG 153 (248)
T ss_dssp SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHH--CCCCTT
T ss_pred eEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHH--HHHHcC
Confidence 37999999999887665443 256789998832210 1111111111 122333
Q ss_pred c--ccEEEEeCCcccccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025492 120 Y--QNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT 185 (252)
Q Consensus 120 ~--~nv~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~ 185 (252)
+ +|++++.+...+.++. .+...+..+++.. -|.. -....|+.+...|.|||.|+|
T Consensus 154 l~~~~v~~vkG~F~dTLp~-~p~~~IAll~lD~--DlYe--------sT~~aLe~lyprl~~GGiIi~ 210 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPD-APIERIALLHLDC--DLYE--------STKDALEFLYPRLSPGGIIIF 210 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC--TT--EEEEEE-----SHH--------HHHHHHHHHGGGEEEEEEEEE
T ss_pred CCcccEEEECCcchhhhcc-CCCccEEEEEEec--cchH--------HHHHHHHHHHhhcCCCeEEEE
Confidence 3 6899999998877764 3444555555432 1221 123589999999999999988
No 297
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.82 E-value=0.85 Score=43.47 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=33.6
Q ss_pred CCceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHH
Q 025492 65 KKIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKE 107 (252)
Q Consensus 65 ~~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~ 107 (252)
+...|+=+|||. |..++..|+.. +..++++|.+++.++.+.+
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH
Confidence 356899999998 77777777776 4589999999988776654
No 298
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.60 E-value=1.3 Score=39.62 Aligned_cols=99 Identities=14% Similarity=0.077 Sum_probs=63.7
Q ss_pred CCceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCc--c---cccCccC
Q 025492 65 KKIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS--M---KYIPNYF 138 (252)
Q Consensus 65 ~~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da--~---~~l~~~~ 138 (252)
....||=+|+|. |..+...|+......++.+|+++..++.|++ + |.+.+....... . +.+...+
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---------Ga~~~~~~~~~~~~~~~~~~v~~~~ 238 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---------GATVTDPSSHKSSPQELAELVEKAL 238 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---------CCeEEeeccccccHHHHHHHHHhhc
Confidence 356899999998 8888888888888899999999999998876 3 444333332211 1 1111222
Q ss_pred CCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 139 EKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 139 ~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
.....|..+- .+- ....++.....|+.||++.++-
T Consensus 239 g~~~~d~~~d-CsG-------------~~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 239 GKKQPDVTFD-CSG-------------AEVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred cccCCCeEEE-ccC-------------chHHHHHHHHHhccCCEEEEec
Confidence 2223444332 111 1247778888999999977753
No 299
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=92.54 E-value=0.37 Score=45.36 Aligned_cols=112 Identities=13% Similarity=0.092 Sum_probs=66.3
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCH----hHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCc
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRD----KVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQ 142 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~----~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s 142 (252)
..|+|...|.|.|+++|... | |..+-+-+ +.+...-. .|+ -=+.-|.-+.++ ..+.+
T Consensus 367 RNVMDMnAg~GGFAAAL~~~-~---VWVMNVVP~~~~ntL~vIyd----------RGL---IG~yhDWCE~fs--TYPRT 427 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD-P---VWVMNVVPVSGPNTLPVIYD----------RGL---IGVYHDWCEAFS--TYPRT 427 (506)
T ss_pred eeeeeecccccHHHHHhccC-C---ceEEEecccCCCCcchhhhh----------ccc---chhccchhhccC--CCCcc
Confidence 47999999999999999865 2 22232222 11111100 121 112224444444 33789
Q ss_pred ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcC
Q 025492 143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENH 203 (252)
Q Consensus 143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~ 203 (252)
+|.|+.+.-.. +.+.|-.-..++-++-|+|+|||.++|. |..+..+.+...+.+-
T Consensus 428 YDLlHA~~lfs-----~~~~rC~~~~illEmDRILRP~G~~iiR-D~~~vl~~v~~i~~~l 482 (506)
T PF03141_consen 428 YDLLHADGLFS-----LYKDRCEMEDILLEMDRILRPGGWVIIR-DTVDVLEKVKKIAKSL 482 (506)
T ss_pred hhheehhhhhh-----hhcccccHHHHHHHhHhhcCCCceEEEe-ccHHHHHHHHHHHHhC
Confidence 99998753211 1122333457999999999999999885 5566666666666543
No 300
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=92.12 E-value=1.2 Score=39.05 Aligned_cols=96 Identities=15% Similarity=0.151 Sum_probs=58.3
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC-CcccccCccCCCCcc
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT-NSMKYIPNYFEKGQL 143 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~-da~~~l~~~~~~~s~ 143 (252)
+..||..|||. |..++.+|+.. +..+++++.++...+.+++ . +.+.+..... +....+ .......+
T Consensus 166 ~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~----~------g~~~~~~~~~~~~~~~~-~~~~~~~~ 233 (338)
T cd08254 166 GETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKE----L------GADEVLNSLDDSPKDKK-AAGLGGGF 233 (338)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH----h------CCCEEEcCCCcCHHHHH-HHhcCCCc
Confidence 44666689874 88888999986 5679999999887665532 1 3322211111 111111 12234567
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
|.++-.... ...++.+.+.|+++|+++...
T Consensus 234 D~vid~~g~--------------~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 234 DVIFDFVGT--------------QPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred eEEEECCCC--------------HHHHHHHHHHhhcCCEEEEEC
Confidence 766533211 247888999999999998763
No 301
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=92.04 E-value=1.7 Score=38.73 Aligned_cols=95 Identities=14% Similarity=0.206 Sum_probs=56.6
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEE-EEeCCcccccCccCCCCcc
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNIS-VVRTNSMKYIPNYFEKGQL 143 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~-~~~~da~~~l~~~~~~~s~ 143 (252)
...||=+|||. |..++.+|+......++++|.+++.++.+.+ + +.+.+- .-..+..+... ..+.+
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~-l---------Ga~~vi~~~~~~~~~~~~---~~g~~ 236 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE-M---------GADKLVNPQNDDLDHYKA---EKGYF 236 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH-c---------CCcEEecCCcccHHHHhc---cCCCC
Confidence 44677789875 6677778887643468999999987766543 1 322211 00111111111 12347
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
|.|+-.... +..++...+.|++||++++.-
T Consensus 237 D~vid~~G~--------------~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 237 DVSFEVSGH--------------PSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred CEEEECCCC--------------HHHHHHHHHHhhcCCEEEEEc
Confidence 777643322 136788889999999998864
No 302
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.94 E-value=2 Score=38.32 Aligned_cols=120 Identities=15% Similarity=0.132 Sum_probs=67.0
Q ss_pred EEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEEE
Q 025492 69 FADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMFF 148 (252)
Q Consensus 69 vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~~ 148 (252)
|+|+-||.|.+...+.+.. -..+.++|+++.+++.-+.+. ++ .++.+|+.+.-...++ .+|.++.
T Consensus 1 vidLF~G~GG~~~Gl~~aG-~~~~~a~e~~~~a~~ty~~N~-----------~~-~~~~~Di~~~~~~~~~--~~dvl~g 65 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG-FKCVFASEIDKYAQKTYEANF-----------GN-KVPFGDITKISPSDIP--DFDILLG 65 (315)
T ss_pred CEEEecCccHHHHHHHHcC-CeEEEEEeCCHHHHHHHHHhC-----------CC-CCCccChhhhhhhhCC--CcCEEEe
Confidence 5899999999998888774 223578999998765544332 22 4456777642221232 5799988
Q ss_pred eCCCC-cccccccccc-ccCHHHHHHHHHhh---cCCcEEEEEeCchH--------HHHHHHHHHhcCCC
Q 025492 149 LFPDP-HFKEKNHRRR-VISPHLLDEYAYVL---GVGGIIYTITDVEE--------LGDWMRSCLENHPM 205 (252)
Q Consensus 149 ~fpdP-~~k~~h~krr-~~~~~~l~~~~~~L---kpgG~l~~~td~~~--------~~~~~~~~~~~~~~ 205 (252)
-+|.. +......+.. -....++.++.+++ +|. +++.-++.. .+..+...+...++
T Consensus 66 g~PCq~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~P~--~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY 133 (315)
T TIGR00675 66 GFPCQPFSIAGKRKGFEDTRGTLFFEIVRILKEKKPK--FFLLENVKGLVSHDKGRTFKVIIETLEELGY 133 (315)
T ss_pred cCCCcccchhcccCCCCCchhhHHHHHHHHHhhcCCC--EEEeeccHHHHhcccchHHHHHHHHHHhCCC
Confidence 87744 3332221110 01123444444444 553 444444443 34555666665543
No 303
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.92 E-value=0.087 Score=42.40 Aligned_cols=111 Identities=14% Similarity=0.131 Sum_probs=70.2
Q ss_pred ceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 67 IQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 67 ~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
..|||+|-|- |..++.+|..-|+..|.-.|=+...++-.++..... ...+++.+.+++-+... -........||.
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n---~~s~~tsc~vlrw~~~~-aqsq~eq~tFDi 106 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSN---MASSLTSCCVLRWLIWG-AQSQQEQHTFDI 106 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcc---cccccceehhhHHHHhh-hHHHHhhCcccE
Confidence 4799999995 666678888889999999999998887665543221 11244445454444321 111122457888
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV 189 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~ 189 (252)
|..- |=.+-+.|+ ..+++.+.+.|+|.|.-.+-++-
T Consensus 107 IlaA--DClFfdE~h------~sLvdtIk~lL~p~g~Al~fsPR 142 (201)
T KOG3201|consen 107 ILAA--DCLFFDEHH------ESLVDTIKSLLRPSGRALLFSPR 142 (201)
T ss_pred EEec--cchhHHHHH------HHHHHHHHHHhCcccceeEecCc
Confidence 8742 111111222 36999999999999987776653
No 304
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=91.87 E-value=0.5 Score=38.81 Aligned_cols=109 Identities=17% Similarity=0.218 Sum_probs=52.9
Q ss_pred EEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCC----------cccEEEEeCCcccccCccC
Q 025492 69 FADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQ----------YQNISVVRTNSMKYIPNYF 138 (252)
Q Consensus 69 vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~----------~~nv~~~~~da~~~l~~~~ 138 (252)
|-=||.|.=.+..+++-...+.+|+|+|+++..++..++-.. ...+.+ ..|+++. .|..+.+
T Consensus 3 I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~---p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai---- 74 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGEL---PIYEPGLDELLKENVSAGRLRAT-TDIEEAI---- 74 (185)
T ss_dssp EEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSS---SS-CTTHHHHHHHHHHTTSEEEE-SEHHHHH----
T ss_pred EEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccc---cccccchhhhhccccccccchhh-hhhhhhh----
Confidence 444677764444444444447899999999987765432100 000011 1233332 2222111
Q ss_pred CCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025492 139 EKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD 188 (252)
Q Consensus 139 ~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td 188 (252)
...|.+++..|.|........-.. -...++.+...|++|-.+++.|=
T Consensus 75 --~~adv~~I~VpTP~~~~~~~Dls~-v~~a~~~i~~~l~~~~lvV~~ST 121 (185)
T PF03721_consen 75 --KDADVVFICVPTPSDEDGSPDLSY-VESAIESIAPVLRPGDLVVIEST 121 (185)
T ss_dssp --HH-SEEEE----EBETTTSBETHH-HHHHHHHHHHHHCSCEEEEESSS
T ss_pred --hccceEEEecCCCccccCCccHHH-HHHHHHHHHHHHhhcceEEEccE
Confidence 246899999888875532211111 13578888999999888888653
No 305
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=91.52 E-value=2.2 Score=40.64 Aligned_cols=116 Identities=16% Similarity=0.251 Sum_probs=70.1
Q ss_pred ceEEEEcCcccHHHHHHHHHC----CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCc
Q 025492 67 IQFADIGCGFGGLLISLSTLF----PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQ 142 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~----p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s 142 (252)
..+.|.-||+|.++....... ....++|-|....+...|..+.... ....+++....+|.... +.......
T Consensus 219 ~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~----~~~~~t~~~~~~dtl~~-~d~~~~~~ 293 (501)
T TIGR00497 219 DDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILH----NIDYANFNIINADTLTT-KEWENENG 293 (501)
T ss_pred CcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHc----CCCccccCcccCCcCCC-cccccccc
Confidence 479999999999998765432 1246899999999988777654221 01112344444553321 12333456
Q ss_pred ccEEEEeCCCC--cccc-----cccccc----------ccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 143 LTKMFFLFPDP--HFKE-----KNHRRR----------VISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 143 ~d~i~~~fpdP--~~k~-----~h~krr----------~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
+|.|..|.|.. |... ....+. -....++..+..+|++||+..++-
T Consensus 294 ~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~ 355 (501)
T TIGR00497 294 FEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVC 355 (501)
T ss_pred CCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEe
Confidence 88888887643 3211 000111 123568889999999999866553
No 306
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=91.27 E-value=0.36 Score=43.92 Aligned_cols=41 Identities=24% Similarity=0.270 Sum_probs=35.4
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHH
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKE 107 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~ 107 (252)
-+.++|+|.|.|.++..|+-.+ +..|.|||-|....+.|++
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence 4579999999999999999887 6789999999887777664
No 307
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=90.90 E-value=1.8 Score=38.73 Aligned_cols=90 Identities=13% Similarity=0.122 Sum_probs=53.3
Q ss_pred CceEEEEcCcc-cHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025492 66 KIQFADIGCGF-GGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL 143 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~ 143 (252)
...||=+|||. |.+++.+|++ .....++++|.++..++.|.. + +.. ..+ .+ +.. ...+
T Consensus 164 g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~---------~~~--~~~-~~----~~~---~~g~ 223 (341)
T cd08237 164 RNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-A---------DET--YLI-DD----IPE---DLAV 223 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-c---------Cce--eeh-hh----hhh---ccCC
Confidence 56788899976 4455677775 455689999999877665532 1 111 000 01 110 1135
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
|.|+-.-..+ ..+..+....+.|++||++++.
T Consensus 224 d~viD~~G~~-----------~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 224 DHAFECVGGR-----------GSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred cEEEECCCCC-----------ccHHHHHHHHHhCcCCcEEEEE
Confidence 6665332211 0124788888999999998875
No 308
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=90.78 E-value=0.27 Score=42.35 Aligned_cols=43 Identities=26% Similarity=0.415 Sum_probs=32.4
Q ss_pred ceEEEEcCcccHHHHHHHHHC----C----CCeEEEEecCHhHHHHHHHHH
Q 025492 67 IQFADIGCGFGGLLISLSTLF----P----EVLMIGMELRDKVTEYVKERI 109 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~----p----~~~~iGiDis~~~i~~a~~~~ 109 (252)
..|+|+|.|+|.++..+.... | ...++-||+|+.+.+.-++++
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L 70 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERL 70 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHh
Confidence 589999999999999888752 2 358999999998876655544
No 309
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=90.74 E-value=2.2 Score=38.18 Aligned_cols=92 Identities=17% Similarity=0.097 Sum_probs=54.2
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEec---CHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCC
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMEL---RDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKG 141 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDi---s~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~ 141 (252)
...||=+|||. |.+++.+|+.. +..+++++. ++...+.+.+ .+...+.....+..+ . ....
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~----------~Ga~~v~~~~~~~~~-~---~~~~ 237 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEE----------LGATYVNSSKTPVAE-V---KLVG 237 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHH----------cCCEEecCCccchhh-h---hhcC
Confidence 45778889886 77778888876 458999987 5555544432 133322111111110 0 0123
Q ss_pred cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
.+|.|+-.... ...+....+.|++||++++.
T Consensus 238 ~~d~vid~~g~--------------~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 238 EFDLIIEATGV--------------PPLAFEALPALAPNGVVILF 268 (355)
T ss_pred CCCEEEECcCC--------------HHHHHHHHHHccCCcEEEEE
Confidence 46766654322 13778889999999999875
No 310
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=90.67 E-value=0.43 Score=41.46 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=30.2
Q ss_pred CceEEEEcCcccHHHHHHHHHC-----CCCeEEEEecCHh
Q 025492 66 KIQFADIGCGFGGLLISLSTLF-----PEVLMIGMELRDK 100 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~-----p~~~~iGiDis~~ 100 (252)
...++|.|||.|.++..+++.. +...++-||....
T Consensus 19 ~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~ 58 (259)
T PF05206_consen 19 DSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASN 58 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcc
Confidence 4489999999999999999997 5678999998654
No 311
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.60 E-value=0.59 Score=37.16 Aligned_cols=60 Identities=22% Similarity=0.319 Sum_probs=43.8
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSM 131 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~ 131 (252)
....+|||+|.|.+.++.|+.. -..-+|+|+++-.+.+++ +...|. .-....+|.+-|+.
T Consensus 73 ~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysr--l~a~R~---g~~k~trf~Rkdlw 132 (199)
T KOG4058|consen 73 KGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSR--LHAWRA---GCAKSTRFRRKDLW 132 (199)
T ss_pred CCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHH--HHHHHH---hcccchhhhhhhhh
Confidence 4589999999999999999885 345689999999887654 344432 12245778887764
No 312
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=90.36 E-value=2 Score=38.51 Aligned_cols=97 Identities=18% Similarity=0.223 Sum_probs=55.9
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccE-EEEeCCcccccCccCCCCcc
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNI-SVVRTNSMKYIPNYFEKGQL 143 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv-~~~~~da~~~l~~~~~~~s~ 143 (252)
...||=+|||. |..++.+|+......++++|.++...+.+.+ + +.+.+ .....+..+.+........+
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~------Ga~~~i~~~~~~~~~~i~~~~~~~g~ 246 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----F------GATHTVNSSGTDPVEAIRALTGGFGA 246 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----c------CCceEEcCCCcCHHHHHHHHhCCCCC
Confidence 45677779875 6777888887643359999999887666532 1 33211 11111211112111222347
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
|.|+-.... ...+....+.|++||++++.
T Consensus 247 d~vid~~g~--------------~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 247 DVVIDAVGR--------------PETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred CEEEECCCC--------------HHHHHHHHHHhccCCEEEEE
Confidence 776643221 13677788899999999875
No 313
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=90.35 E-value=2.2 Score=36.94 Aligned_cols=97 Identities=8% Similarity=0.002 Sum_probs=55.1
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
...||=+|+|. |..++.+|+......++++|.++...+.+++ + +.+.+-- ..+..+.+........+|
T Consensus 121 g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~------Ga~~~i~-~~~~~~~~~~~~~~~g~d 189 (280)
T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----F------GATALAE-PEVLAERQGGLQNGRGVD 189 (280)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----c------CCcEecC-chhhHHHHHHHhCCCCCC
Confidence 45677788865 6666777777633348999998877665543 1 2221110 011111111111223467
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
.++-.... ...++.+.+.|+++|++++..
T Consensus 190 ~vid~~G~--------------~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 190 VALEFSGA--------------TAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred EEEECCCC--------------hHHHHHHHHHhcCCCEEEEec
Confidence 76643222 247888899999999998754
No 314
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=90.19 E-value=0.4 Score=36.88 Aligned_cols=74 Identities=16% Similarity=0.255 Sum_probs=45.7
Q ss_pred ccEEEEeCCcccccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHH
Q 025492 121 QNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCL 200 (252)
Q Consensus 121 ~nv~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~ 200 (252)
-++.+..+|+.+.++.. +..+|.||+.--.|- +. ..+=+.++++.+++.++|||++..-|- ...+...+
T Consensus 31 v~L~L~~gDa~~~l~~l--~~~~Da~ylDgFsP~---~n--PelWs~e~~~~l~~~~~~~~~l~Tys~----a~~Vr~~L 99 (124)
T PF05430_consen 31 VTLTLWFGDAREMLPQL--DARFDAWYLDGFSPA---KN--PELWSEELFKKLARLSKPGGTLATYSS----AGAVRRAL 99 (124)
T ss_dssp EEEEEEES-HHHHHHHB---T-EEEEEE-SS-TT---TS--GGGSSHHHHHHHHHHEEEEEEEEES------BHHHHHHH
T ss_pred EEEEEEEcHHHHHHHhC--cccCCEEEecCCCCc---CC--cccCCHHHHHHHHHHhCCCcEEEEeec----hHHHHHHH
Confidence 36888999998766643 378999998521111 11 113356899999999999999876553 33456666
Q ss_pred hcCCC
Q 025492 201 ENHPM 205 (252)
Q Consensus 201 ~~~~~ 205 (252)
...++
T Consensus 100 ~~aGF 104 (124)
T PF05430_consen 100 QQAGF 104 (124)
T ss_dssp HHCTE
T ss_pred HHcCC
Confidence 66653
No 315
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=90.01 E-value=1.2 Score=38.38 Aligned_cols=129 Identities=18% Similarity=0.103 Sum_probs=74.9
Q ss_pred CceEEEEcCcccHHHHHHHHHCCC------------CeEEEEecCHhHHHHHH--HHHH-------HHh-----------
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPE------------VLMIGMELRDKVTEYVK--ERIL-------ALR----------- 113 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~------------~~~iGiDis~~~i~~a~--~~~~-------~~~----------- 113 (252)
..+|+|+|.|+|.-.+.+-+.+++ ..++.+|.++.....+. .... ++.
T Consensus 59 ~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~~ 138 (252)
T COG4121 59 ILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGCA 138 (252)
T ss_pred ceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchhH
Confidence 458999999999988777665433 34788998764321111 0000 000
Q ss_pred hcCCCCcccEEEEeCCcccccCccCCCC--cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchH
Q 025492 114 VSNPGQYQNISVVRTNSMKYIPNYFEKG--QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEE 191 (252)
Q Consensus 114 ~~~~~~~~nv~~~~~da~~~l~~~~~~~--s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~ 191 (252)
.+...+..++.++.+|+.+.++.. +.. .+|..++.--.|- +.. .+=+.+++..+++..++||++.--|
T Consensus 139 r~~~~g~~~l~l~~gd~~~~~p~~-~~~~~~~dAwflDgFsP~---kNP--~mW~~e~l~~~a~~~~~~~~l~t~s---- 208 (252)
T COG4121 139 AAVRHGLLLLGLVIGDAGDGIPPV-PRRRPGTDAWFLDGFRPV---KNP--EMWEDELLNLMARIPYRDPTLATFA---- 208 (252)
T ss_pred HhhhcchheeeeeeeehhhcCCcc-cccccCccEEecCCcccc---CCh--hhccHHHHHHHHhhcCCCCceechH----
Confidence 001135667889999998766543 111 5677776421111 000 1125689999999999999986422
Q ss_pred HHHHHHHHHhcCC
Q 025492 192 LGDWMRSCLENHP 204 (252)
Q Consensus 192 ~~~~~~~~~~~~~ 204 (252)
-+-.....+.+.+
T Consensus 209 sA~~vRr~L~~aG 221 (252)
T COG4121 209 AAIAVRRRLEQAG 221 (252)
T ss_pred HHHHHHHHHHHcC
Confidence 2333444555544
No 316
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=89.82 E-value=0.21 Score=45.99 Aligned_cols=66 Identities=11% Similarity=0.165 Sum_probs=54.3
Q ss_pred CCCCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCccccc
Q 025492 63 CSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYI 134 (252)
Q Consensus 63 ~~~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l 134 (252)
.+++.+|-|+-||.|-+++.+++. ++.+++-|.+++++++...++... .-...++.+...||.+++
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lN----kv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLN----KVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhcccc----ccchhheeeecccHHHHh
Confidence 345679999999999999999999 599999999999999988776432 123446999999998776
No 317
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=89.14 E-value=3.7 Score=34.43 Aligned_cols=97 Identities=19% Similarity=0.151 Sum_probs=58.9
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccE-EEEeCCcccccCccCCCCcc
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNI-SVVRTNSMKYIPNYFEKGQL 143 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv-~~~~~da~~~l~~~~~~~s~ 143 (252)
...||-+|+|. |..++.+|+.. +..+++++.++...+.+.. . +...+ .....+....+. ......+
T Consensus 135 ~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~----~------g~~~~~~~~~~~~~~~~~-~~~~~~~ 202 (271)
T cd05188 135 GDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKE----L------GADHVIDYKEEDLEEELR-LTGGGGA 202 (271)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----h------CCceeccCCcCCHHHHHH-HhcCCCC
Confidence 55899999996 77778888876 4789999999876555432 1 21111 000111111111 1223568
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD 188 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td 188 (252)
|.++-+...+ ..+..+.+.|+++|.++....
T Consensus 203 d~vi~~~~~~--------------~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 203 DVVIDAVGGP--------------ETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred CEEEECCCCH--------------HHHHHHHHhcccCCEEEEEcc
Confidence 8887654331 367778889999999987653
No 318
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=88.94 E-value=3.7 Score=36.65 Aligned_cols=40 Identities=18% Similarity=0.324 Sum_probs=31.5
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHH
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVK 106 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~ 106 (252)
...||=+|||. |..++.+|+.. +..++++|.++..++.+.
T Consensus 167 g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~ 207 (349)
T TIGR03201 167 GDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMK 207 (349)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHH
Confidence 45788899977 77778888886 457999999998776653
No 319
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=88.91 E-value=0.51 Score=42.06 Aligned_cols=57 Identities=21% Similarity=0.214 Sum_probs=42.4
Q ss_pred EEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCc
Q 025492 69 FADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS 130 (252)
Q Consensus 69 vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da 130 (252)
=+|||+|.-.+--.+..+.-+..++|+|++...+..|.+++.+. +..+.+.+++...
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn-----~lss~ikvV~~~~ 162 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQN-----NLSSLIKVVKVEP 162 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccccccchhhcccccc-----ccccceeeEEecc
Confidence 48999998776666655555688999999999999999887553 2334577777654
No 320
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=88.79 E-value=6.4 Score=35.24 Aligned_cols=125 Identities=14% Similarity=0.142 Sum_probs=73.1
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...++|+-||.|.+...+.... -..+.++|+++.+++.-..+ .+.-.++..|+.+.....+....+|.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n-----------~~~~~~~~~di~~~~~~~~~~~~~Dv 70 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKAN-----------FPHGDIILGDIKELDGEALRKSDVDV 70 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC-CeEEEEEecCHHHHHHHHHh-----------CCCCceeechHhhcChhhccccCCCE
Confidence 4589999999999998888886 33578999999876543322 22255666776643332232227899
Q ss_pred EEEeCCCCcccccccc------ccccCHHHHHHHHHhhcCCcEEEEEeCchHHHH-------HHHHHHhcCCC
Q 025492 146 MFFLFPDPHFKEKNHR------RRVISPHLLDEYAYVLGVGGIIYTITDVEELGD-------WMRSCLENHPM 205 (252)
Q Consensus 146 i~~~fpdP~~k~~h~k------rr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~-------~~~~~~~~~~~ 205 (252)
++--+|..-+..-... |.-+.- -+.++...++| .+++.-+++.+.. .+.+.|.+.++
T Consensus 71 ligGpPCQ~FS~aG~r~~~~D~R~~L~~-~~~r~I~~~~P--~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY 140 (328)
T COG0270 71 LIGGPPCQDFSIAGKRRGYDDPRGSLFL-EFIRLIEQLRP--KFFVLENVKGLLSSKGQTFDEIKKELEELGY 140 (328)
T ss_pred EEeCCCCcchhhcCcccCCcCccceeeH-HHHHHHHhhCC--CEEEEecCchHHhcCchHHHHHHHHHHHcCC
Confidence 9988886654422111 111111 22334445567 5555555554443 34455555554
No 321
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=88.72 E-value=3.4 Score=40.31 Aligned_cols=102 Identities=9% Similarity=-0.011 Sum_probs=64.2
Q ss_pred eEEEEcCcccHHHHHHHHH--CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccc--cCccCCCCcc
Q 025492 68 QFADIGCGFGGLLISLSTL--FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKY--IPNYFEKGQL 143 (252)
Q Consensus 68 ~vLDIGcG~G~~~~~lA~~--~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~--l~~~~~~~s~ 143 (252)
.|+=+|+ |.++..+++. ..+..++.+|.+++.++.+++ ....++.+|+.+. +. ...-...
T Consensus 402 ~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-------------~g~~v~~GDat~~~~L~-~agi~~A 465 (601)
T PRK03659 402 QVIIVGF--GRFGQVIGRLLMANKMRITVLERDISAVNLMRK-------------YGYKVYYGDATQLELLR-AAGAEKA 465 (601)
T ss_pred CEEEecC--chHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-------------CCCeEEEeeCCCHHHHH-hcCCccC
Confidence 4555555 5566666654 236689999999988765532 1356888998641 11 1123467
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHH
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWM 196 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~ 196 (252)
+.+++..+|+-.. ..+-...+.+.|...++..+.+++-.+.+
T Consensus 466 ~~vv~~~~d~~~n-----------~~i~~~~r~~~p~~~IiaRa~~~~~~~~L 507 (601)
T PRK03659 466 EAIVITCNEPEDT-----------MKIVELCQQHFPHLHILARARGRVEAHEL 507 (601)
T ss_pred CEEEEEeCCHHHH-----------HHHHHHHHHHCCCCeEEEEeCCHHHHHHH
Confidence 8888888776421 24445566778999998888776554433
No 322
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=88.38 E-value=3.9 Score=36.39 Aligned_cols=97 Identities=10% Similarity=0.130 Sum_probs=54.0
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccE-EEEeCCcccccCccCCCCcc
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNI-SVVRTNSMKYIPNYFEKGQL 143 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv-~~~~~da~~~l~~~~~~~s~ 143 (252)
...||=.|||. |..++.+|+......+++++.+++..+.+.+ + +...+ .....+.. .+........+
T Consensus 161 g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~---------Ga~~~i~~~~~~~~-~~~~~~~~~~~ 229 (347)
T PRK10309 161 GKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS-L---------GAMQTFNSREMSAP-QIQSVLRELRF 229 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH-c---------CCceEecCcccCHH-HHHHHhcCCCC
Confidence 34666668876 6666778887643347899998877665432 1 22211 00111111 12112223346
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
|.+++...- ....+....+.|++||++++.
T Consensus 230 d~~v~d~~G-------------~~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 230 DQLILETAG-------------VPQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred CeEEEECCC-------------CHHHHHHHHHHhhcCCEEEEE
Confidence 644433211 124788889999999999886
No 323
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=88.28 E-value=4.2 Score=35.94 Aligned_cols=96 Identities=11% Similarity=0.018 Sum_probs=54.3
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCCe-EEEEecCHhHHHHHHHHHHHHhhcCCCCcccEE-EEeCCcccccCccCCCCc
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEVL-MIGMELRDKVTEYVKERILALRVSNPGQYQNIS-VVRTNSMKYIPNYFEKGQ 142 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~-~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~-~~~~da~~~l~~~~~~~s 142 (252)
...||=+|+|. |..++.+|+.. +.. +++++.+++..+.+.+ + +.+.+- ....+ .+.+........
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~----~------ga~~~i~~~~~~-~~~~~~~~~~~~ 231 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAKA----L------GADFVINSGQDD-VQEIRELTSGAG 231 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----h------CCCEEEcCCcch-HHHHHHHhCCCC
Confidence 44566678865 66667777776 455 9999998877665532 1 332111 10111 111211122235
Q ss_pred ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
+|.|+-.... ...+....+.|+++|++++..
T Consensus 232 ~d~vid~~g~--------------~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 232 ADVAIECSGN--------------TAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CCEEEECCCC--------------HHHHHHHHHHhhcCCEEEEEc
Confidence 7777643322 136677788999999998753
No 324
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=88.09 E-value=7.9 Score=32.63 Aligned_cols=100 Identities=5% Similarity=-0.000 Sum_probs=61.1
Q ss_pred CceEEEEcCccc----HHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc-EEEEeCCccc-ccCccCC
Q 025492 66 KIQFADIGCGFG----GLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQN-ISVVRTNSMK-YIPNYFE 139 (252)
Q Consensus 66 ~~~vLDIGcG~G----~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~~~~da~~-~l~~~~~ 139 (252)
...++|+.|+.| .+++..|.++-+.+++.|-..+..+....+.+.. .++.+ +.|+.++..+ .++. +
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~------~~~~~~vEfvvg~~~e~~~~~-~- 113 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGE------AGLSDVVEFVVGEAPEEVMPG-L- 113 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhh------ccccccceEEecCCHHHHHhh-c-
Confidence 458999977754 3344555556788999998887765444444433 25544 6999998543 3433 3
Q ss_pred CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhc--CCcEEEEEeC
Q 025492 140 KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLG--VGGIIYTITD 188 (252)
Q Consensus 140 ~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~Lk--pgG~l~~~td 188 (252)
..+|.+.+..- ..++.+.+.+.++ |.|-+++..+
T Consensus 114 -~~iDF~vVDc~--------------~~d~~~~vl~~~~~~~~GaVVV~~N 149 (218)
T PF07279_consen 114 -KGIDFVVVDCK--------------REDFAARVLRAAKLSPRGAVVVCYN 149 (218)
T ss_pred -cCCCEEEEeCC--------------chhHHHHHHHHhccCCCceEEEEec
Confidence 35787777541 1135545555555 5688777654
No 325
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=88.05 E-value=2.7 Score=40.08 Aligned_cols=100 Identities=18% Similarity=0.188 Sum_probs=66.9
Q ss_pred CceEEEEcCcccHHHHHHHHH----CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCC
Q 025492 66 KIQFADIGCGFGGLLISLSTL----FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKG 141 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~----~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~ 141 (252)
..+|+=+|.|-|-+.-+..+. ..-..+++||.+++++...+.. .. ...-..|.++.+|... +. -+..
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~--n~----~~W~~~Vtii~~DMR~-w~--ap~e 438 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR--NF----ECWDNRVTIISSDMRK-WN--APRE 438 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh--ch----hhhcCeeEEEeccccc-cC--Cchh
Confidence 347889999999887544433 3356789999999988654431 11 1134569999999874 43 1125
Q ss_pred cccEEEE----eCCCCccccccccccccCHHHHHHHHHhhcCCcEEE
Q 025492 142 QLTKMFF----LFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIY 184 (252)
Q Consensus 142 s~d~i~~----~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~ 184 (252)
..|.++. .|-|-- ++++-|.-+.+.|||+|..+
T Consensus 439 q~DI~VSELLGSFGDNE----------LSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 439 QADIIVSELLGSFGDNE----------LSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred hccchHHHhhccccCcc----------CCHHHHHHHHhhcCCCceEc
Confidence 5565542 343432 56789999999999998764
No 326
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=87.99 E-value=3.4 Score=37.34 Aligned_cols=96 Identities=15% Similarity=0.115 Sum_probs=54.8
Q ss_pred ceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccE-EEEeCCcccccCccCCCCccc
Q 025492 67 IQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNI-SVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 67 ~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv-~~~~~da~~~l~~~~~~~s~d 144 (252)
..||=+|+|. |.+++.+|+......++++|.++...+.+.+ + +.+.+ .....|..+.+.... .+.+|
T Consensus 193 ~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~------Ga~~~i~~~~~~~~~~i~~~~-~~g~d 261 (371)
T cd08281 193 QSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----L------GATATVNAGDPNAVEQVRELT-GGGVD 261 (371)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----c------CCceEeCCCchhHHHHHHHHh-CCCCC
Confidence 4555588875 6677778887633369999999887766542 1 33211 111112111121111 22467
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
.|+-.-.. ...+....+.|+++|++++..
T Consensus 262 ~vid~~G~--------------~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 262 YAFEMAGS--------------VPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred EEEECCCC--------------hHHHHHHHHHHhcCCEEEEEc
Confidence 76643221 147778889999999988753
No 327
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=87.92 E-value=3.9 Score=35.93 Aligned_cols=84 Identities=21% Similarity=0.220 Sum_probs=51.1
Q ss_pred ceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 67 IQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 67 ~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
..+|=+|||. |.+++.+|+......++++|.++..++.|.. . .++ |..+. ....+|.
T Consensus 146 ~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~------------~---~~i--~~~~~-----~~~g~Dv 203 (308)
T TIGR01202 146 LPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATG------------Y---EVL--DPEKD-----PRRDYRA 203 (308)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhh------------c---ccc--Chhhc-----cCCCCCE
Confidence 3577779876 7777888888754457788888765543321 0 011 11110 1234676
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
|+-.-.. ...+..+.+.|++||++.+.
T Consensus 204 vid~~G~--------------~~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 204 IYDASGD--------------PSLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred EEECCCC--------------HHHHHHHHHhhhcCcEEEEE
Confidence 6644322 13678888999999999875
No 328
>PLN02827 Alcohol dehydrogenase-like
Probab=87.06 E-value=4.8 Score=36.61 Aligned_cols=96 Identities=16% Similarity=0.118 Sum_probs=54.2
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC---CcccccCccCCCC
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT---NSMKYIPNYFEKG 141 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~---da~~~l~~~~~~~ 141 (252)
...||=+|+|. |..++.+|+......++++|.++...+.|.+ + +.+.+--... +..+.+.... .+
T Consensus 194 g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----l------Ga~~~i~~~~~~~~~~~~v~~~~-~~ 262 (378)
T PLN02827 194 GSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----F------GVTDFINPNDLSEPIQQVIKRMT-GG 262 (378)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----c------CCcEEEcccccchHHHHHHHHHh-CC
Confidence 45777778865 6666778887643368999998876665532 1 3322110010 1111121111 22
Q ss_pred cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCC-cEEEEE
Q 025492 142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVG-GIIYTI 186 (252)
Q Consensus 142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~Lkpg-G~l~~~ 186 (252)
.+|.|+-.--. ...+....+.|++| |++++.
T Consensus 263 g~d~vid~~G~--------------~~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 263 GADYSFECVGD--------------TGIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred CCCEEEECCCC--------------hHHHHHHHHhhccCCCEEEEE
Confidence 46766532211 13677888899998 999764
No 329
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=87.01 E-value=3.2 Score=39.24 Aligned_cols=111 Identities=12% Similarity=0.105 Sum_probs=59.6
Q ss_pred eEEEEcCcccHHHHH--HHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc---------EEEEeCCcccccCc
Q 025492 68 QFADIGCGFGGLLIS--LSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQN---------ISVVRTNSMKYIPN 136 (252)
Q Consensus 68 ~vLDIGcG~G~~~~~--lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n---------v~~~~~da~~~l~~ 136 (252)
.|.=||+|......+ ||...++.+|+|+|++++.++..++..... .+.++.. +.+ ..|..+.
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~---~e~gl~ell~~~~~~~l~~-t~~~~~~--- 75 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPI---YEPGLDEVVKQCRGKNLFF-STDVEKH--- 75 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCcc---CCCCHHHHHHHhhcCCEEE-EcCHHHH---
Confidence 366678888766665 444445688999999998776543211000 0111111 111 1111100
Q ss_pred cCCCCcccEEEEeCCCCccccc---cccccc-cCHHHHHHHHHhhcCCcEEEEEeC
Q 025492 137 YFEKGQLTKMFFLFPDPHFKEK---NHRRRV-ISPHLLDEYAYVLGVGGIIYTITD 188 (252)
Q Consensus 137 ~~~~~s~d~i~~~fpdP~~k~~---h~krr~-~~~~~l~~~~~~LkpgG~l~~~td 188 (252)
-...|.+++..|.|-.... ...-.+ --...++.+.+.|++|-.+++.|=
T Consensus 76 ---i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~ST 128 (473)
T PLN02353 76 ---VAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (473)
T ss_pred ---HhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCC
Confidence 1346888888888863221 000000 113577778888888777777653
No 330
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=86.93 E-value=2.9 Score=38.46 Aligned_cols=119 Identities=14% Similarity=0.134 Sum_probs=67.1
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccc---------cCcc
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKY---------IPNY 137 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~---------l~~~ 137 (252)
.+|-=||=|.=.+-.+.+-.-.+..++|+||++..++..++ |. ..+..-+..+. |.-.
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~-----------G~--~~i~e~~~~~~v~~~v~~g~lraT 76 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR-----------GE--SYIEEPDLDEVVKEAVESGKLRAT 76 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC-----------Cc--ceeecCcHHHHHHHHHhcCCceEe
Confidence 35666777765444444444447789999999987765432 21 12222222110 1100
Q ss_pred CC---CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc-----hHHHHHHHHH
Q 025492 138 FE---KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV-----EELGDWMRSC 199 (252)
Q Consensus 138 ~~---~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~-----~~~~~~~~~~ 199 (252)
.. -...|.+.+.-|.|.-+. +......-....+.++.+|++|-.+++-+=. ++...++++.
T Consensus 77 td~~~l~~~dv~iI~VPTPl~~~-~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~ 145 (436)
T COG0677 77 TDPEELKECDVFIICVPTPLKKY-REPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEE 145 (436)
T ss_pred cChhhcccCCEEEEEecCCcCCC-CCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhh
Confidence 11 126788899999998653 2111111234677888999999999886432 3455555444
No 331
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=86.58 E-value=4.4 Score=35.65 Aligned_cols=112 Identities=12% Similarity=0.078 Sum_probs=75.6
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
+..|+=+| -.-.+++++|..+-...+..|||++..+....+-+.+. ++.|+..+.-|+...+++.+ ...||.
T Consensus 153 gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~------g~~~ie~~~~Dlr~plpe~~-~~kFDv 224 (354)
T COG1568 153 GKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEEL------GYNNIEAFVFDLRNPLPEDL-KRKFDV 224 (354)
T ss_pred CCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHh------CccchhheeehhcccChHHH-HhhCCe
Confidence 34688889 55677777777765668999999999999888766655 89999999999876555433 356777
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCC---cEEEEEeCchHHHH
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVG---GIIYTITDVEELGD 194 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~Lkpg---G~l~~~td~~~~~~ 194 (252)
++...|.-.. . -..|+..=-..||-- |.+.+.+-......
T Consensus 225 fiTDPpeTi~---a------lk~FlgRGI~tLkg~~~aGyfgiT~ressidk 267 (354)
T COG1568 225 FITDPPETIK---A------LKLFLGRGIATLKGEGCAGYFGITRRESSIDK 267 (354)
T ss_pred eecCchhhHH---H------HHHHHhccHHHhcCCCccceEeeeeccccHHH
Confidence 6643332111 0 113666666677754 88988765443333
No 332
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=86.36 E-value=1.5 Score=34.20 Aligned_cols=38 Identities=18% Similarity=0.186 Sum_probs=25.8
Q ss_pred EEcCccc--HHHHHHH--HHCCCCeEEEEecCHhHHHHHHHH
Q 025492 71 DIGCGFG--GLLISLS--TLFPEVLMIGMELRDKVTEYVKER 108 (252)
Q Consensus 71 DIGcG~G--~~~~~lA--~~~p~~~~iGiDis~~~i~~a~~~ 108 (252)
|||++.| ..+..++ ...+...++++|.++..++..+.+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 6666654 457888999999999988887776
No 333
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=86.34 E-value=2.5 Score=39.21 Aligned_cols=127 Identities=13% Similarity=0.159 Sum_probs=61.7
Q ss_pred eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEE--EEeCCcccccCccCCCCcccE
Q 025492 68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNIS--VVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~--~~~~da~~~l~~~~~~~s~d~ 145 (252)
.|-=||.|.-...++.+-...+..++|+|+++..++..+... . .....+++.+- .+...... ... .....|.
T Consensus 5 kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~--~-~~~e~~l~~~l~~~~~~g~l~-~~~--~~~~aDv 78 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGE--I-HIVEPDLDMVVKTAVEGGYLR-ATT--TPEPADA 78 (415)
T ss_pred EEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCC--C-CcCCCCHHHHHHHHhhcCcee-eec--ccccCCE
Confidence 466778887555444443333678999999998765421100 0 00000110000 00000000 000 1125789
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC-chHHHHHHHHHHh
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD-VEELGDWMRSCLE 201 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td-~~~~~~~~~~~~~ 201 (252)
|++..|+|........-.. -...++.+...|++|-.+++.|= .....+.+...+.
T Consensus 79 vii~vptp~~~~~~~dl~~-v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~ 134 (415)
T PRK11064 79 FLIAVPTPFKGDHEPDLTY-VEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLA 134 (415)
T ss_pred EEEEcCCCCCCCCCcChHH-HHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHH
Confidence 9999998853221111011 12356778888888887776543 3344444444443
No 334
>PLN02740 Alcohol dehydrogenase-like
Probab=86.20 E-value=6 Score=35.88 Aligned_cols=95 Identities=17% Similarity=0.131 Sum_probs=55.7
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC-----CcccccCccCC
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT-----NSMKYIPNYFE 139 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~-----da~~~l~~~~~ 139 (252)
...||=+|||. |..++.+|+......++++|.+++.++.+.+ + +.+. ++.. +..+.+....
T Consensus 199 g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~------Ga~~--~i~~~~~~~~~~~~v~~~~- 265 (381)
T PLN02740 199 GSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE----M------GITD--FINPKDSDKPVHERIREMT- 265 (381)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----c------CCcE--EEecccccchHHHHHHHHh-
Confidence 45777789876 6667778887643369999999887766642 1 3322 2211 1111121111
Q ss_pred CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCC-cEEEEEe
Q 025492 140 KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVG-GIIYTIT 187 (252)
Q Consensus 140 ~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~Lkpg-G~l~~~t 187 (252)
.+.+|.|+-.--. ...+......+++| |++++..
T Consensus 266 ~~g~dvvid~~G~--------------~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 266 GGGVDYSFECAGN--------------VEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred CCCCCEEEECCCC--------------hHHHHHHHHhhhcCCCEEEEEc
Confidence 2257766543222 24777778888887 8887653
No 335
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.08 E-value=1.1 Score=36.00 Aligned_cols=96 Identities=16% Similarity=0.194 Sum_probs=57.9
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
.|..|-||||.= +-+|+...+-++-++ .|.+ .++|. ....|.++|+|.
T Consensus 3 ~p~kv~ig~G~~-------r~npgWi~~d~ed~~----------------------~vdl-vc~As--~e~~F~dns~d~ 50 (185)
T COG4627 3 QPEKVKIGAGGK-------RVNPGWIITDVEDRP----------------------EVDL-VCRAS--NESMFEDNSVDA 50 (185)
T ss_pred CceEEEEecccc-------ccCCCceeeehhccc----------------------ccch-hhhhh--hhccCCCcchHH
Confidence 457889999974 335676444333222 2333 23443 224588899999
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHH
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSC 199 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~ 199 (252)
|+.-.- | .|.-- ---..++++++++|||||.|.++..+-.+..+.-..
T Consensus 51 iyaeHv--l---EHlt~-~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~ 98 (185)
T COG4627 51 IYAEHV--L---EHLTY-DEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQH 98 (185)
T ss_pred HHHHHH--H---HHHhH-HHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhh
Confidence 874210 0 00000 001258999999999999999999887777666555
No 336
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=86.03 E-value=6.3 Score=34.75 Aligned_cols=97 Identities=15% Similarity=0.144 Sum_probs=54.3
Q ss_pred CceEEEEcCc-ccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccE-EEEeCCcccccCccCCCCcc
Q 025492 66 KIQFADIGCG-FGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNI-SVVRTNSMKYIPNYFEKGQL 143 (252)
Q Consensus 66 ~~~vLDIGcG-~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv-~~~~~da~~~l~~~~~~~s~ 143 (252)
...||-.|+| .|..++.+|+......+++++.+....+.+.+ . +...+ .....+..+.+........+
T Consensus 168 ~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~----~------g~~~vi~~~~~~~~~~i~~~~~~~~~ 237 (347)
T cd05278 168 GSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE----A------GATDIINPKNGDIVEQILELTGGRGV 237 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH----h------CCcEEEcCCcchHHHHHHHHcCCCCC
Confidence 3456667876 37788888888643478888887765544332 1 21111 11111111112112233567
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
|.++-.... ...+....+.|+++|+++..
T Consensus 238 d~vld~~g~--------------~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 238 DCVIEAVGF--------------EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred cEEEEccCC--------------HHHHHHHHHHhhcCCEEEEE
Confidence 776632211 14788889999999998764
No 337
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=85.98 E-value=6.6 Score=37.80 Aligned_cols=99 Identities=11% Similarity=0.021 Sum_probs=61.6
Q ss_pred eEEEEcCcccHHHHHHHHH--CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccC---CCCc
Q 025492 68 QFADIGCGFGGLLISLSTL--FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYF---EKGQ 142 (252)
Q Consensus 68 ~vLDIGcG~G~~~~~lA~~--~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~---~~~s 142 (252)
.++=+||| .++..+|+. ..+..++.||.+++.++.+++ .+...+.+|+.+. +.+ .-+.
T Consensus 419 hiiI~G~G--~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~-------------~g~~~i~GD~~~~--~~L~~a~i~~ 481 (558)
T PRK10669 419 HALLVGYG--RVGSLLGEKLLAAGIPLVVIETSRTRVDELRE-------------RGIRAVLGNAANE--EIMQLAHLDC 481 (558)
T ss_pred CEEEECCC--hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-------------CCCeEEEcCCCCH--HHHHhcCccc
Confidence 45556665 556666664 235689999999987655432 1477889998641 112 2246
Q ss_pred ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHH
Q 025492 143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGD 194 (252)
Q Consensus 143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~ 194 (252)
.|.+.+..+|.... ..+-...+.+.|+..++...++++..+
T Consensus 482 a~~viv~~~~~~~~-----------~~iv~~~~~~~~~~~iiar~~~~~~~~ 522 (558)
T PRK10669 482 ARWLLLTIPNGYEA-----------GEIVASAREKRPDIEIIARAHYDDEVA 522 (558)
T ss_pred cCEEEEEcCChHHH-----------HHHHHHHHHHCCCCeEEEEECCHHHHH
Confidence 77788777765421 234444566778888888877655433
No 338
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=85.50 E-value=11 Score=33.55 Aligned_cols=88 Identities=13% Similarity=0.052 Sum_probs=53.0
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
...||=.|+|. |..++.+|+.. +.++++++.+++..+.|++ + +.+.+ + |..+ ...+.+|
T Consensus 166 g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~----~------Ga~~v--i--~~~~-----~~~~~~d 225 (329)
T TIGR02822 166 GGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALA----L------GAASA--G--GAYD-----TPPEPLD 225 (329)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHH----h------CCcee--c--cccc-----cCcccce
Confidence 45788888764 56667777775 5679999999877665543 1 33322 1 1100 0112355
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
.++..-.. ...+....+.|++||++.+.-
T Consensus 226 ~~i~~~~~--------------~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 226 AAILFAPA--------------GGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred EEEECCCc--------------HHHHHHHHHhhCCCcEEEEEe
Confidence 54432211 137778889999999998743
No 339
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=85.32 E-value=9.8 Score=34.87 Aligned_cols=109 Identities=13% Similarity=0.083 Sum_probs=56.7
Q ss_pred eEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEe-CCcccccCccCCCCcccE
Q 025492 68 QFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVR-TNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 68 ~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~-~da~~~l~~~~~~~s~d~ 145 (252)
.||=.|+|. |..++.+|+......++.+|.++..++.|.+ + +...+.... .+..+.+........+|.
T Consensus 188 ~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~----~------Ga~~v~~~~~~~~~~~v~~~~~~~g~Dv 257 (393)
T TIGR02819 188 TVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARS----F------GCETVDLSKDATLPEQIEQILGEPEVDC 257 (393)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH----c------CCeEEecCCcccHHHHHHHHcCCCCCcE
Confidence 444488875 6667778887644456777888776665543 1 433111111 122111222122235777
Q ss_pred EEEeCCCCccccccccccccC-HHHHHHHHHhhcCCcEEEEEe
Q 025492 146 MFFLFPDPHFKEKNHRRRVIS-PHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~-~~~l~~~~~~LkpgG~l~~~t 187 (252)
++-.--.|.... -+++.... ...+++...+|++||++++.-
T Consensus 258 vid~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 258 AVDCVGFEARGH-GHDGKKEAPATVLNSLMEVTRVGGAIGIPG 299 (393)
T ss_pred EEECCCCccccc-cccccccchHHHHHHHHHHhhCCCEEEEee
Confidence 764433321100 00011112 247888999999999998853
No 340
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=85.22 E-value=7.1 Score=32.52 Aligned_cols=100 Identities=16% Similarity=0.224 Sum_probs=59.2
Q ss_pred CceEEEEcCcccHHHHHHHHH----CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccc-----cCc
Q 025492 66 KIQFADIGCGFGGLLISLSTL----FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKY-----IPN 136 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~----~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~-----l~~ 136 (252)
..+|+|+|.-.|..++..|.. .....++|+||+-...+-+.. ..+.|.|++++-.+. +.
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~-----------e~p~i~f~egss~dpai~eqi~- 137 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAR-----------EVPDILFIEGSSTDPAIAEQIR- 137 (237)
T ss_pred CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhh-----------cCCCeEEEeCCCCCHHHHHHHH-
Confidence 348999999999999888875 234689999998765433221 357899999885421 11
Q ss_pred cCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025492 137 YFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT 185 (252)
Q Consensus 137 ~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~ 185 (252)
...+....|++..-.-+ ++++- -.-++.+.++|.-|-.+++
T Consensus 138 -~~~~~y~kIfvilDsdH----s~~hv---LAel~~~~pllsaG~Y~vV 178 (237)
T COG3510 138 -RLKNEYPKIFVILDSDH----SMEHV---LAELKLLAPLLSAGDYLVV 178 (237)
T ss_pred -HHhcCCCcEEEEecCCc----hHHHH---HHHHHHhhhHhhcCceEEE
Confidence 11233445555431111 11111 1345566677777776654
No 341
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=85.03 E-value=8.8 Score=34.39 Aligned_cols=95 Identities=14% Similarity=0.176 Sum_probs=56.8
Q ss_pred CceEEEEcC--cccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEe-C-CcccccCccCCCC
Q 025492 66 KIQFADIGC--GFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVR-T-NSMKYIPNYFEKG 141 (252)
Q Consensus 66 ~~~vLDIGc--G~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~-~-da~~~l~~~~~~~ 141 (252)
...||=.|+ |.|.+++.+|+.. +..+++++.++...+.+.+.+ +.+.+--.. . +..+.+.... .+
T Consensus 159 g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~~l---------Ga~~vi~~~~~~~~~~~i~~~~-~~ 227 (348)
T PLN03154 159 GDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKNKL---------GFDEAFNYKEEPDLDAALKRYF-PE 227 (348)
T ss_pred CCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhc---------CCCEEEECCCcccHHHHHHHHC-CC
Confidence 457888887 4688888999886 567999998887655443211 333221111 1 2222222111 23
Q ss_pred cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
.+|.++-.. ....+....+.|++||++++.
T Consensus 228 gvD~v~d~v---------------G~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 228 GIDIYFDNV---------------GGDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred CcEEEEECC---------------CHHHHHHHHHHhccCCEEEEE
Confidence 567666322 123677888999999999864
No 342
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=84.95 E-value=2.2 Score=39.22 Aligned_cols=63 Identities=6% Similarity=0.053 Sum_probs=48.3
Q ss_pred CCcccEEEEeCCcccccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 118 GQYQNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 118 ~~~~nv~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
.++++|+++++++.+.+.. .+++++|.+++.=-..|.... .....++++.+.++|||++++.+
T Consensus 272 ~~~drv~i~t~si~~~L~~-~~~~s~~~~vL~D~~Dwm~~~------~~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 272 ARLDRVRIHTDSIEEVLRR-LPPGSFDRFVLSDHMDWMDPE------QLNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred cCCCeEEEEeccHHHHHHh-CCCCCeeEEEecchhhhCCHH------HHHHHHHHHHHHhCCCCEEEEee
Confidence 3669999999999887753 678999999875333454332 12368899999999999999987
No 343
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=84.63 E-value=0.72 Score=40.78 Aligned_cols=75 Identities=12% Similarity=0.054 Sum_probs=51.4
Q ss_pred CceEEEEcCcccHHHH-HHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 66 KIQFADIGCGFGGLLI-SLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~-~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
..+|+|+=.|-|.|++ .+... ....|.++|+++..++..++++... .-.....++.+|-. ..-+....|
T Consensus 195 ~eviVDLYAGIGYFTlpflV~a-gAk~V~A~EwNp~svEaLrR~~~~N-----~V~~r~~i~~gd~R----~~~~~~~Ad 264 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTA-GAKTVFACEWNPWSVEALRRNAEAN-----NVMDRCRITEGDNR----NPKPRLRAD 264 (351)
T ss_pred cchhhhhhcccceEEeehhhcc-CccEEEEEecCHHHHHHHHHHHHhc-----chHHHHHhhhcccc----ccCccccch
Confidence 3689999999999999 55555 4668999999999998776655332 11223344455533 123467899
Q ss_pred EEEEeC
Q 025492 145 KMFFLF 150 (252)
Q Consensus 145 ~i~~~f 150 (252)
.|.+-.
T Consensus 265 rVnLGL 270 (351)
T KOG1227|consen 265 RVNLGL 270 (351)
T ss_pred heeecc
Confidence 998753
No 344
>PRK10458 DNA cytosine methylase; Provisional
Probab=84.54 E-value=22 Score=33.61 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=30.6
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHH
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYV 105 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a 105 (252)
.-.++|+=||.|.+...+-... ...+.++|+++.+.+.-
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG-~~~v~a~Eid~~A~~TY 126 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIG-GQCVFTSEWNKHAVRTY 126 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcC-CEEEEEEechHHHHHHH
Confidence 3489999999999999987763 34678999999765443
No 345
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=84.54 E-value=8.2 Score=34.00 Aligned_cols=97 Identities=14% Similarity=0.169 Sum_probs=57.4
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccE-EEEeCCcccccCccCCCCcc
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNI-SVVRTNSMKYIPNYFEKGQL 143 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv-~~~~~da~~~l~~~~~~~s~ 143 (252)
+..||-.|+|. |..++.+|+.. +.+++++..+++..+.+++ . +.+.+ .....+..+.+........+
T Consensus 160 g~~vLI~g~g~vG~~a~~lA~~~-g~~v~~~~~s~~~~~~~~~----~------g~~~v~~~~~~~~~~~l~~~~~~~~v 228 (337)
T cd08261 160 GDTVLVVGAGPIGLGVIQVAKAR-GARVIVVDIDDERLEFARE----L------GADDTINVGDEDVAARLRELTDGEGA 228 (337)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHH----h------CCCEEecCcccCHHHHHHHHhCCCCC
Confidence 44677779875 78888888885 6789999888776554422 1 22221 11111211122222233457
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
|.++-..- ....+..+.+.|+++|+++...
T Consensus 229 d~vld~~g--------------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 229 DVVIDATG--------------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CEEEECCC--------------CHHHHHHHHHHHhcCCEEEEEc
Confidence 77764321 1247888899999999988653
No 346
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=84.36 E-value=3.1 Score=37.83 Aligned_cols=44 Identities=23% Similarity=0.351 Sum_probs=34.8
Q ss_pred eEEEEcCcccHHHHHHHHH----CC----CCeEEEEecCHhHHHHHHHHHHH
Q 025492 68 QFADIGCGFGGLLISLSTL----FP----EVLMIGMELRDKVTEYVKERILA 111 (252)
Q Consensus 68 ~vLDIGcG~G~~~~~lA~~----~p----~~~~iGiDis~~~i~~a~~~~~~ 111 (252)
.++|||.|.|.++..+.+. .| ...|.-||+|++..+.-++++..
T Consensus 80 ~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 80 KLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred eEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 6999999999999877765 34 57899999999987665555543
No 347
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=83.21 E-value=3.4 Score=35.94 Aligned_cols=46 Identities=22% Similarity=0.147 Sum_probs=39.8
Q ss_pred CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHH
Q 025492 65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILAL 112 (252)
Q Consensus 65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~ 112 (252)
.+.+|||-=+|+|..+++.... +..++|+|+++.-++.+..++...
T Consensus 222 ~~diVlDpf~GsGtt~~aa~~~--~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 222 PGDIVLDPFAGSGTTGIAAKNL--GRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred CCCEEeecCCCCChHHHHHHHc--CCceEEEecCHHHHHHHHHHHHhh
Confidence 4679999999999998887777 778999999999999988887654
No 348
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=82.87 E-value=7.4 Score=38.15 Aligned_cols=100 Identities=12% Similarity=-0.009 Sum_probs=61.1
Q ss_pred ceEEEEcCcccHHHHHHHHH--CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccC---CCC
Q 025492 67 IQFADIGCGFGGLLISLSTL--FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYF---EKG 141 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~--~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~---~~~ 141 (252)
..|+=+|||. ++..+++. ..+..++.+|.+++.++.+++ . ...++.+|+.+ .+ .+ .-+
T Consensus 401 ~~vII~G~Gr--~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----------~---g~~v~~GDat~-~~-~L~~agi~ 463 (621)
T PRK03562 401 PRVIIAGFGR--FGQIVGRLLLSSGVKMTVLDHDPDHIETLRK----------F---GMKVFYGDATR-MD-LLESAGAA 463 (621)
T ss_pred CcEEEEecCh--HHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----------c---CCeEEEEeCCC-HH-HHHhcCCC
Confidence 3577777775 44444432 235689999999998765532 1 35678899864 21 12 224
Q ss_pred cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHH
Q 025492 142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGD 194 (252)
Q Consensus 142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~ 194 (252)
..+.+++...|+... ..+-...+.+.|+-.++..+.+.+...
T Consensus 464 ~A~~vvv~~~d~~~n-----------~~i~~~ar~~~p~~~iiaRa~d~~~~~ 505 (621)
T PRK03562 464 KAEVLINAIDDPQTS-----------LQLVELVKEHFPHLQIIARARDVDHYI 505 (621)
T ss_pred cCCEEEEEeCCHHHH-----------HHHHHHHHHhCCCCeEEEEECCHHHHH
Confidence 677888887776532 244455666778777777666554433
No 349
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=82.41 E-value=13 Score=34.51 Aligned_cols=73 Identities=15% Similarity=0.120 Sum_probs=45.7
Q ss_pred ceEEEEcCcccHHHHHHHHHC--CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccc--cCccCCCCc
Q 025492 67 IQFADIGCGFGGLLISLSTLF--PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKY--IPNYFEKGQ 142 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~--p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~--l~~~~~~~s 142 (252)
..++=+|| |.++..+++.. .+..++.+|.+++.++.+.+ ...++.++.+|+... |.. ..-..
T Consensus 232 ~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~-----------~~~~~~~i~gd~~~~~~L~~-~~~~~ 297 (453)
T PRK09496 232 KRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAE-----------ELPNTLVLHGDGTDQELLEE-EGIDE 297 (453)
T ss_pred CEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH-----------HCCCCeEEECCCCCHHHHHh-cCCcc
Confidence 35666666 56666666653 35689999999987654432 123567888998531 111 12346
Q ss_pred ccEEEEeCCCC
Q 025492 143 LTKMFFLFPDP 153 (252)
Q Consensus 143 ~d~i~~~fpdP 153 (252)
.|.|++..++.
T Consensus 298 a~~vi~~~~~~ 308 (453)
T PRK09496 298 ADAFIALTNDD 308 (453)
T ss_pred CCEEEECCCCc
Confidence 77888777654
No 350
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=82.27 E-value=2.2 Score=33.87 Aligned_cols=101 Identities=14% Similarity=0.125 Sum_probs=51.6
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCC--CCccc
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFE--KGQLT 144 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~--~~s~d 144 (252)
.-|||+|=|+|..--.|-+.+|+..++.+|.--.. .-.. -.+.=.++.+|+.+.++. ++ .....
T Consensus 30 G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~------hp~~-------~P~~~~~ilGdi~~tl~~-~~~~g~~a~ 95 (160)
T PF12692_consen 30 GPVLELGLGNGRTYDHLREIFPDRRIYVFDRALAC------HPSS-------TPPEEDLILGDIRETLPA-LARFGAGAA 95 (160)
T ss_dssp S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-------GGG----------GGGEEES-HHHHHHH-HHHH-S-EE
T ss_pred CceEEeccCCCccHHHHHHhCCCCeEEEEeeeccc------CCCC-------CCchHheeeccHHHHhHH-HHhcCCceE
Confidence 46999999999999999999999999999964321 1000 112335788888776653 11 23344
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT 185 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~ 185 (252)
.++..+-.-...+. -....-+-..+..+|.|||.++-
T Consensus 96 laHaD~G~g~~~~d----~a~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 96 LAHADIGTGDKEKD----DATAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp EEEE----S-HHHH----HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred EEEeecCCCCcchh----HHHHHhhhHHHHHHhcCCcEEEe
Confidence 45544322111110 01111244567789999998753
No 351
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=82.14 E-value=13 Score=32.62 Aligned_cols=95 Identities=17% Similarity=0.229 Sum_probs=54.8
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCC-CCcc
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFE-KGQL 143 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~-~~s~ 143 (252)
...||-.|||. |..++.+|+...-..+++++.++...+.+.+ . +.+. ++..+-. .+..... ...+
T Consensus 166 ~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~----~------g~~~--vi~~~~~-~~~~~~~~~~~v 232 (339)
T cd08232 166 GKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA----M------GADE--TVNLARD-PLAAYAADKGDF 232 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----c------CCCE--EEcCCch-hhhhhhccCCCc
Confidence 34566688887 7788888888633378999988876654322 1 2221 2221110 0111111 2336
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
|.++-.... ...++.+.+.|+++|+++...
T Consensus 233 d~vld~~g~--------------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 233 DVVFEASGA--------------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred cEEEECCCC--------------HHHHHHHHHHHhcCCEEEEEe
Confidence 776643221 136788899999999998653
No 352
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=81.83 E-value=13 Score=32.74 Aligned_cols=97 Identities=14% Similarity=0.176 Sum_probs=55.1
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCCe-EEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEVL-MIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL 143 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~-~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~ 143 (252)
...||-.|+|. |..+..+|+.. +.. +++++-++...+.+.+ . +..++--........+........+
T Consensus 160 ~~~vlI~g~g~~g~~~~~lA~~~-G~~~v~~~~~~~~~~~~l~~----~------g~~~~~~~~~~~~~~~~~~~~~~~~ 228 (343)
T cd08236 160 GDTVVVIGAGTIGLLAIQWLKIL-GAKRVIAVDIDDEKLAVARE----L------GADDTINPKEEDVEKVRELTEGRGA 228 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHH----c------CCCEEecCccccHHHHHHHhCCCCC
Confidence 34677778876 77888888876 454 8999888765544321 1 2221111111101112112222347
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
|.++-.... ...+..+.+.|+++|+++...
T Consensus 229 d~vld~~g~--------------~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 229 DLVIEAAGS--------------PATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CEEEECCCC--------------HHHHHHHHHHhhcCCEEEEEc
Confidence 777643211 137788899999999988764
No 353
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=81.73 E-value=11 Score=33.43 Aligned_cols=97 Identities=18% Similarity=0.137 Sum_probs=54.8
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccE-EEEeCCcccccCccCCCCcc
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNI-SVVRTNSMKYIPNYFEKGQL 143 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv-~~~~~da~~~l~~~~~~~s~ 143 (252)
...||=.|+|. |..++.+|+......++++|.++...+.+.+ . +.+.+ .....+....+........+
T Consensus 167 g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~------g~~~~v~~~~~~~~~~i~~~~~~~~~ 236 (351)
T cd08285 167 GDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----Y------GATDIVDYKNGDVVEQILKLTGGKGV 236 (351)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----c------CCceEecCCCCCHHHHHHHHhCCCCC
Confidence 34566668874 7777788887644369999998876655442 1 33211 11111111111111222357
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
|.++-.... ...+..+.+.|+++|+++..
T Consensus 237 d~vld~~g~--------------~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 237 DAVIIAGGG--------------QDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred cEEEECCCC--------------HHHHHHHHHHhhcCCEEEEe
Confidence 766643211 24788899999999988754
No 354
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=81.06 E-value=4 Score=36.35 Aligned_cols=116 Identities=16% Similarity=0.246 Sum_probs=67.1
Q ss_pred CceEEEEcCcccHHHHHHHHHC--------------------CCCeEEEEecCH--hHHHHHHHHHHHH-----------
Q 025492 66 KIQFADIGCGFGGLLISLSTLF--------------------PEVLMIGMELRD--KVTEYVKERILAL----------- 112 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~--------------------p~~~~iGiDis~--~~i~~a~~~~~~~----------- 112 (252)
...||-||=|.|.=++++|..+ +..+++.|||-+ ..+......+...
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 4589999999988888887765 125899999976 3333332222110
Q ss_pred hhcCCCCcccEEEEeCCcccccCc-----cCCCCcccEEEEeCCC-CccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 113 RVSNPGQYQNISVVRTNSMKYIPN-----YFEKGQLTKMFFLFPD-PHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 113 ~~~~~~~~~nv~~~~~da~~~l~~-----~~~~~s~d~i~~~fpd-P~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
......+.=|+.|.+.|+.. +.. .+...+.+.|.+.|.- -.+.. .+--...||..+...++||-.+.++
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~-~~~~~l~~ll~~~~~~LITLlFTlNELfs~----s~~kTt~FLl~Lt~~~~~GslLLVv 241 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLS-LSEDDLKSLLGPPSPDLITLLFTLNELFST----SISKTTKFLLRLTDICPPGSLLLVV 241 (315)
T ss_pred cccCCccceeeeEEeccccc-CChHHHHHHhccchhHHHHHHHHHHHHHhc----ChHHHHHHHHHHHhhcCCCcEEEEE
Confidence 00011223378999999863 221 1222245566554421 01100 0112346999999999999888775
No 355
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=80.58 E-value=14 Score=33.26 Aligned_cols=41 Identities=20% Similarity=0.154 Sum_probs=30.2
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHH
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVK 106 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~ 106 (252)
...||=+|||. |..++.+|+.....+++++|.++...+.|.
T Consensus 186 g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~ 227 (368)
T TIGR02818 186 GDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAK 227 (368)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 45677779875 667778888764337999999988776653
No 356
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=80.39 E-value=39 Score=30.01 Aligned_cols=123 Identities=11% Similarity=0.131 Sum_probs=67.3
Q ss_pred EEEEcCcc-cHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCC-cccEEEEeCCcccccCccCCCCcccE
Q 025492 69 FADIGCGF-GGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQ-YQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 69 vLDIGcG~-G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~-~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
|.=||+|. |..+..+....+ ...++-+|+.++..+ .....+....... ..++.+..+|.. .+. ..|.
T Consensus 2 i~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~---g~a~DL~~~~~~~~~~~~~i~~~~y~-~~~------~aDi 71 (307)
T cd05290 2 LVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAE---GEALDFHHATALTYSTNTKIRAGDYD-DCA------DADI 71 (307)
T ss_pred EEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhh---HHHHHHHhhhccCCCCCEEEEECCHH-HhC------CCCE
Confidence 44589987 555544333333 236888999876432 2222222111111 135666666643 232 3467
Q ss_pred EEEeCCCCccccccccc-cc----cCHHHHHHHHHhhc---CCcEEEEEeCchHHHHHHHHHHhcC
Q 025492 146 MFFLFPDPHFKEKNHRR-RV----ISPHLLDEYAYVLG---VGGIIYTITDVEELGDWMRSCLENH 203 (252)
Q Consensus 146 i~~~fpdP~~k~~h~kr-r~----~~~~~l~~~~~~Lk---pgG~l~~~td~~~~~~~~~~~~~~~ 203 (252)
|++..-.|. | ....| |+ .+..+++++...|+ |+|.+++.|+.-+...+....+...
T Consensus 72 vvitaG~~~-k-pg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~~~k~sg~ 135 (307)
T cd05290 72 IVITAGPSI-D-PGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYIAATEFDY 135 (307)
T ss_pred EEECCCCCC-C-CCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHHHHHHHHHhCc
Confidence 776544432 1 12221 22 34567777776665 7899999998888877777666543
No 357
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=80.37 E-value=1 Score=38.05 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=39.0
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHH
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERI 109 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~ 109 (252)
....+|.-+|.|.++..+.+.+|+..++++|.+|-+-+.|....
T Consensus 44 g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s 87 (303)
T KOG2782|consen 44 GRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHS 87 (303)
T ss_pred CceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhh
Confidence 45899999999999999999999999999999998877776554
No 358
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=80.19 E-value=19 Score=31.72 Aligned_cols=95 Identities=15% Similarity=0.191 Sum_probs=56.7
Q ss_pred CceEEEEcC--cccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEe-C-CcccccCccCCCC
Q 025492 66 KIQFADIGC--GFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVR-T-NSMKYIPNYFEKG 141 (252)
Q Consensus 66 ~~~vLDIGc--G~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~-~-da~~~l~~~~~~~ 141 (252)
+..||=.|+ |.|..++.+|+.. +..+++++.++...+.+.+.+ +.+.+--.. . +..+.+.... ..
T Consensus 152 g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~~~~~~~~~~l---------Ga~~vi~~~~~~~~~~~i~~~~-~~ 220 (338)
T cd08295 152 GETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSDEKVDLLKNKL---------GFDDAFNYKEEPDLDAALKRYF-PN 220 (338)
T ss_pred CCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhc---------CCceeEEcCCcccHHHHHHHhC-CC
Confidence 457777886 5688888899886 567999988887655543311 333221111 1 2221122212 24
Q ss_pred cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
.+|.|+-... ...+....+.|+++|+++..
T Consensus 221 gvd~v~d~~g---------------~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 221 GIDIYFDNVG---------------GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred CcEEEEECCC---------------HHHHHHHHHHhccCcEEEEe
Confidence 5777663321 13677888999999999864
No 359
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=80.06 E-value=1.8 Score=41.85 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=29.9
Q ss_pred CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCH
Q 025492 66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRD 99 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~ 99 (252)
...|||+||..|.++.-.++..| +..++|||+-+
T Consensus 45 a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 45 AHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred cchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 45899999999999999999987 55789999876
No 360
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=79.08 E-value=18 Score=31.91 Aligned_cols=97 Identities=15% Similarity=0.171 Sum_probs=54.3
Q ss_pred ceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEe-CCc---ccccCccCCCC
Q 025492 67 IQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVR-TNS---MKYIPNYFEKG 141 (252)
Q Consensus 67 ~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~-~da---~~~l~~~~~~~ 141 (252)
..||=.|+|. |..++.+|+......+++++.++...+.+.+ . +.+++--.. .+. ...+.......
T Consensus 164 ~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~----~------g~~~vi~~~~~~~~~~~~~~~~~~~~~ 233 (343)
T cd05285 164 DTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKE----L------GATHTVNVRTEDTPESAEKIAELLGGK 233 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----c------CCcEEeccccccchhHHHHHHHHhCCC
Confidence 3444468876 7788888888643338888888765544422 1 222211111 111 11122223334
Q ss_pred cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
.+|.|+-.... ...+....+.|+++|+++...
T Consensus 234 ~~d~vld~~g~--------------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 234 GPDVVIECTGA--------------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCCEEEECCCC--------------HHHHHHHHHHhhcCCEEEEEc
Confidence 57777643321 137788899999999988754
No 361
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=78.38 E-value=23 Score=32.17 Aligned_cols=95 Identities=16% Similarity=0.093 Sum_probs=60.6
Q ss_pred CCceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC----CcccccCccCC
Q 025492 65 KKIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT----NSMKYIPNYFE 139 (252)
Q Consensus 65 ~~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~----da~~~l~~~~~ 139 (252)
+...|.=+|||. |..++.-|+......+++||+++..+++|.+- +.. .++.. |+.+.+.+ +.
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f----------GAT--~~vn~~~~~~vv~~i~~-~T 251 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF----------GAT--HFVNPKEVDDVVEAIVE-LT 251 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc----------CCc--eeecchhhhhHHHHHHH-hc
Confidence 456888999986 66667777777777899999999988887641 222 22222 33332221 23
Q ss_pred CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 140 KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 140 ~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
++-+|..+-.-- +...++.....+.++|...+.
T Consensus 252 ~gG~d~~~e~~G--------------~~~~~~~al~~~~~~G~~v~i 284 (366)
T COG1062 252 DGGADYAFECVG--------------NVEVMRQALEATHRGGTSVII 284 (366)
T ss_pred CCCCCEEEEccC--------------CHHHHHHHHHHHhcCCeEEEE
Confidence 434555543211 225888888888889988874
No 362
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=78.16 E-value=18 Score=33.13 Aligned_cols=104 Identities=15% Similarity=0.202 Sum_probs=56.3
Q ss_pred CceEEEEc-Cc-ccHHHHHHHHHCC--CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC----CcccccCcc
Q 025492 66 KIQFADIG-CG-FGGLLISLSTLFP--EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT----NSMKYIPNY 137 (252)
Q Consensus 66 ~~~vLDIG-cG-~G~~~~~lA~~~p--~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~----da~~~l~~~ 137 (252)
...||=+| +| .|..++.+|+... ...++++|.++..++.|.+...... ...+.. ..++.. +..+.+...
T Consensus 176 g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~--~~~Ga~-~~~i~~~~~~~~~~~v~~~ 252 (410)
T cd08238 176 GGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEA--ASRGIE-LLYVNPATIDDLHATLMEL 252 (410)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccc--cccCce-EEEECCCccccHHHHHHHH
Confidence 34677776 45 5778888888742 2379999999988777654311000 000111 112221 111112111
Q ss_pred CCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 138 FEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 138 ~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
.....+|.++..-.. ...+....+.|+++|.+++.
T Consensus 253 t~g~g~D~vid~~g~--------------~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 253 TGGQGFDDVFVFVPV--------------PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred hCCCCCCEEEEcCCC--------------HHHHHHHHHHhccCCeEEEE
Confidence 222357777654322 24778888999988876543
No 363
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=77.71 E-value=21 Score=32.09 Aligned_cols=96 Identities=15% Similarity=0.130 Sum_probs=53.3
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEE-EEeC--CcccccCccCCCC
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNIS-VVRT--NSMKYIPNYFEKG 141 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~-~~~~--da~~~l~~~~~~~ 141 (252)
...||=+|+|. |..++.+|+......++++|.++...+.+.+ + +.+.+- .... +..+.+.. +..+
T Consensus 187 g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~----l------Ga~~~i~~~~~~~~~~~~v~~-~~~~ 255 (368)
T cd08300 187 GSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK----F------GATDCVNPKDHDKPIQQVLVE-MTDG 255 (368)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----c------CCCEEEcccccchHHHHHHHH-HhCC
Confidence 45666678765 6666777877643369999999887665532 1 332211 1111 11111111 1123
Q ss_pred cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCC-cEEEEE
Q 025492 142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVG-GIIYTI 186 (252)
Q Consensus 142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~Lkpg-G~l~~~ 186 (252)
.+|.|+-.-.. ...+....+.|+++ |++++.
T Consensus 256 g~d~vid~~g~--------------~~~~~~a~~~l~~~~G~~v~~ 287 (368)
T cd08300 256 GVDYTFECIGN--------------VKVMRAALEACHKGWGTSVII 287 (368)
T ss_pred CCcEEEECCCC--------------hHHHHHHHHhhccCCCeEEEE
Confidence 46766532211 23777788889887 888765
No 364
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=77.51 E-value=24 Score=30.82 Aligned_cols=94 Identities=17% Similarity=0.066 Sum_probs=55.1
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCCe-EEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCccccc-CccCCCCc
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEVL-MIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYI-PNYFEKGQ 142 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~-~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l-~~~~~~~s 142 (252)
...||-+|+|. |..++.+|+.. +.. +++++.+++..+.+.+ . +.+ .++..+-.... ........
T Consensus 160 g~~vlI~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~----~------g~~--~~~~~~~~~~~~~~~~~~~~ 226 (334)
T cd08234 160 GDSVLVFGAGPIGLLLAQLLKLN-GASRVTVAEPNEEKLELAKK----L------GAT--ETVDPSREDPEAQKEDNPYG 226 (334)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH----h------CCe--EEecCCCCCHHHHHHhcCCC
Confidence 35677778764 77778888886 444 8889888876654422 1 322 22222211000 01112345
Q ss_pred ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
+|.++-.... ...+..+.+.|+++|+++..
T Consensus 227 vd~v~~~~~~--------------~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 227 FDVVIEATGV--------------PKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred CcEEEECCCC--------------hHHHHHHHHHHhcCCEEEEE
Confidence 7777643221 24788889999999998765
No 365
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=77.51 E-value=33 Score=29.91 Aligned_cols=94 Identities=13% Similarity=0.127 Sum_probs=56.0
Q ss_pred CceEEEEcCc-ccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 66 KIQFADIGCG-FGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG-~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
...||-+||| .|..+..+|+.. +..+++++.++...+.+.+ . +...+ +..+-...... ....+|
T Consensus 163 ~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~-~---------g~~~~--~~~~~~~~~~~--~~~~~d 227 (330)
T cd08245 163 GERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARK-L---------GADEV--VDSGAELDEQA--AAGGAD 227 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH-h---------CCcEE--eccCCcchHHh--ccCCCC
Confidence 4467777997 688888888885 5689999988877655422 1 22211 11110000111 123577
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD 188 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td 188 (252)
.++-.... ...+..+.+.|+++|.++....
T Consensus 228 ~vi~~~~~--------------~~~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 228 VILVTVVS--------------GAAAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred EEEECCCc--------------HHHHHHHHHhcccCCEEEEECC
Confidence 76643222 2477888899999999987653
No 366
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=77.49 E-value=23 Score=31.21 Aligned_cols=96 Identities=14% Similarity=0.164 Sum_probs=52.6
Q ss_pred ceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEE-EEeCCcccccCccCCCCccc
Q 025492 67 IQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNIS-VVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 67 ~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~-~~~~da~~~l~~~~~~~s~d 144 (252)
..||=.|+|. |..++.+|+......+++++-++.....+.+ . +.+.+- ....+.. .+........+|
T Consensus 165 ~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~------g~~~~~~~~~~~~~-~~~~~~~~~~vd 233 (341)
T cd05281 165 KSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKK----M------GADVVINPREEDVV-EVKSVTDGTGVD 233 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----h------CcceeeCcccccHH-HHHHHcCCCCCC
Confidence 3444468765 7777888888643368888766654443322 1 322111 1111211 111222334577
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
.++-... ....+..+.+.|+++|+++...
T Consensus 234 ~vld~~g--------------~~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 234 VVLEMSG--------------NPKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred EEEECCC--------------CHHHHHHHHHHhccCCEEEEEc
Confidence 7764321 1246778889999999998754
No 367
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=77.45 E-value=23 Score=31.74 Aligned_cols=94 Identities=17% Similarity=0.187 Sum_probs=54.6
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC---CcccccCccCCCC
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT---NSMKYIPNYFEKG 141 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~---da~~~l~~~~~~~ 141 (252)
...||=.|+|. |..++.+|+......++++|.++...+.+.+ . +.. .++.. +..+.+.... ..
T Consensus 187 g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~----~------g~~--~~i~~~~~~~~~~v~~~~-~~ 253 (365)
T cd08278 187 GSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE----L------GAT--HVINPKEEDLVAAIREIT-GG 253 (365)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----c------CCc--EEecCCCcCHHHHHHHHh-CC
Confidence 34566668865 7777888888644369999998876554432 1 222 12211 1111121111 33
Q ss_pred cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
.+|.|+-.... ...+..+.+.|+++|+++..
T Consensus 254 ~~d~vld~~g~--------------~~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 254 GVDYALDTTGV--------------PAVIEQAVDALAPRGTLALV 284 (365)
T ss_pred CCcEEEECCCC--------------cHHHHHHHHHhccCCEEEEe
Confidence 57776643221 13778889999999998875
No 368
>KOG4174 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.44 E-value=46 Score=28.91 Aligned_cols=136 Identities=17% Similarity=0.130 Sum_probs=78.1
Q ss_pred CCceEEEEcCcccHHHHHHHHHCC--CCeEEEEecCHhHHH------HHHHHHHHHhhcCCCCcccEEEEeCCcccccCc
Q 025492 65 KKIQFADIGCGFGGLLISLSTLFP--EVLMIGMELRDKVTE------YVKERILALRVSNPGQYQNISVVRTNSMKYIPN 136 (252)
Q Consensus 65 ~~~~vLDIGcG~G~~~~~lA~~~p--~~~~iGiDis~~~i~------~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~ 136 (252)
+...||.+|=|.=.++..||..+- ..++++..++..-.+ .|..++..+.. .|. .-+...|+. .+..
T Consensus 56 ~~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~---lG~--~I~h~Vdv~-sl~~ 129 (282)
T KOG4174|consen 56 KKQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKR---LGG--TILHGVDVT-SLKF 129 (282)
T ss_pred ccccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHH---cCC--ceEecccce-eEEe
Confidence 345799999998888999999864 446666655443211 13334444422 121 122233443 1211
Q ss_pred --cCCCCcccEEEEeCCCCcccc-ccccccc------cCHHHHHHHHHhhc-CCcEEEEEe-CchHHHHHHHHHHhcCCC
Q 025492 137 --YFEKGQLTKMFFLFPDPHFKE-KNHRRRV------ISPHLLDEYAYVLG-VGGIIYTIT-DVEELGDWMRSCLENHPM 205 (252)
Q Consensus 137 --~~~~~s~d~i~~~fpdP~~k~-~h~krr~------~~~~~l~~~~~~Lk-pgG~l~~~t-d~~~~~~~~~~~~~~~~~ 205 (252)
.+.-.-+|.|+.|||---..- ..+++.. +...||+.+...|+ ..|.|++.- +...|-.|=...+....+
T Consensus 130 ~~~~~~~~~d~IiFNFPH~G~g~~~e~d~~~i~~~qkL~rgFle~akemL~~edGeI~itlk~t~P~~~W~ik~Lak~~g 209 (282)
T KOG4174|consen 130 HADLRLQRYDNIIFNFPHSGKGIKFEQDRNIIPLHQKLFRGFLESAKEMLKDEDGEIHITLKTTYPFNPWNIKFLAKEFG 209 (282)
T ss_pred cccccccccceEEEcCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccCCCCchhhhhHhhhhcc
Confidence 233567999999987432111 1222222 23579999999999 789998842 234566677766655433
Q ss_pred c
Q 025492 206 F 206 (252)
Q Consensus 206 ~ 206 (252)
+
T Consensus 210 l 210 (282)
T KOG4174|consen 210 L 210 (282)
T ss_pred c
Confidence 3
No 369
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=77.37 E-value=7.6 Score=33.64 Aligned_cols=106 Identities=11% Similarity=0.060 Sum_probs=58.5
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCC----Cc
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEK----GQ 142 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~----~s 142 (252)
..||.+|||-=.-...+... ++..++-||. ++.++.-++.+... ......+.+++.+|+...+...+.. ..
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~-P~v~~~K~~~l~~~---~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~ 157 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWP-DGTRVFEVDQ-PAVLAFKEKVLAEL---GAEPPAHRRAVPVDLRQDWPAALAAAGFDPT 157 (260)
T ss_pred cEEEEeCCccccHHHhcCCC-CCCeEEECCC-hHHHHHHHHHHHHc---CCCCCCceEEeccCchhhHHHHHHhCCCCCC
Confidence 47999999998777766322 2455665554 33444433333322 1113467899999975322111111 11
Q ss_pred ccEEEE------eCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025492 143 LTKMFF------LFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD 188 (252)
Q Consensus 143 ~d~i~~------~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td 188 (252)
...+++ .++..- ...+|+.+.....||+.+++..-
T Consensus 158 ~ptl~i~EGvl~YL~~~~-----------v~~ll~~i~~~~~~gs~l~~d~~ 198 (260)
T TIGR00027 158 APTAWLWEGLLMYLTEEA-----------VDALLAFIAELSAPGSRLAFDYV 198 (260)
T ss_pred CCeeeeecchhhcCCHHH-----------HHHHHHHHHHhCCCCcEEEEEec
Confidence 222222 222211 22588888888889999999753
No 370
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=77.33 E-value=21 Score=32.83 Aligned_cols=122 Identities=9% Similarity=0.035 Sum_probs=59.0
Q ss_pred EEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc------cEEEEe-CCcccccCccCCC
Q 025492 69 FADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ------NISVVR-TNSMKYIPNYFEK 140 (252)
Q Consensus 69 vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~------nv~~~~-~da~~~l~~~~~~ 140 (252)
|-=||+|. |.-+..+... +..|+|+|+++..++.+++..... ...++. +.++.. .|..+. .
T Consensus 3 I~VIGlGyvGl~~A~~lA~--G~~VigvD~d~~kv~~l~~g~~~~---~e~~l~~~l~~~~~~l~~t~~~~~~------~ 71 (388)
T PRK15057 3 ITISGTGYVGLSNGLLIAQ--NHEVVALDILPSRVAMLNDRISPI---VDKEIQQFLQSDKIHFNATLDKNEA------Y 71 (388)
T ss_pred EEEECCCHHHHHHHHHHHh--CCcEEEEECCHHHHHHHHcCCCCC---CCcCHHHHHHhCCCcEEEecchhhh------h
Confidence 33457763 4333322222 578999999999876654311000 000111 122211 111110 1
Q ss_pred CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe-CchHHHHHHHHHHhc
Q 025492 141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT-DVEELGDWMRSCLEN 202 (252)
Q Consensus 141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t-d~~~~~~~~~~~~~~ 202 (252)
...|.|++..|+|...+...-..-.-...++.+.+ +++|..+++.| -.....+.+...+.+
T Consensus 72 ~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~ 133 (388)
T PRK15057 72 RDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRT 133 (388)
T ss_pred cCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhc
Confidence 35699999999986432110000001234456666 67777776544 334455555555544
No 371
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=77.12 E-value=47 Score=34.70 Aligned_cols=113 Identities=13% Similarity=0.025 Sum_probs=63.4
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCCe-------------EEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcc
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEVL-------------MIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSM 131 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~-------------~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~ 131 (252)
...|+=||||. |...+....+.|+.. ++..|.+.+..+.+.+ +.+++..+..|+.
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~-----------~~~~~~~v~lDv~ 637 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVE-----------GIENAEAVQLDVS 637 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHH-----------hcCCCceEEeecC
Confidence 34799999995 666666666666655 7778988764432221 2346656666543
Q ss_pred cccCccCCC-CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025492 132 KYIPNYFEK-GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP 204 (252)
Q Consensus 132 ~~l~~~~~~-~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~ 204 (252)
+ ....... ..+|.|++.-|... -...+...++-|=.++..+...+-...+.+...+.+
T Consensus 638 D-~e~L~~~v~~~DaVIsalP~~~--------------H~~VAkaAieaGkHvv~eky~~~e~~~L~e~Ak~AG 696 (1042)
T PLN02819 638 D-SESLLKYVSQVDVVISLLPASC--------------HAVVAKACIELKKHLVTASYVSEEMSALDSKAKEAG 696 (1042)
T ss_pred C-HHHHHHhhcCCCEEEECCCchh--------------hHHHHHHHHHcCCCEEECcCCHHHHHHHHHHHHHcC
Confidence 2 1211210 24899998877654 122333444555444444444444455555555554
No 372
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=76.99 E-value=34 Score=29.75 Aligned_cols=102 Identities=21% Similarity=0.183 Sum_probs=57.6
Q ss_pred eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhh-c-CCCC----------cccEEEEeCCcccccC
Q 025492 68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRV-S-NPGQ----------YQNISVVRTNSMKYIP 135 (252)
Q Consensus 68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~-~-~~~~----------~~nv~~~~~da~~~l~ 135 (252)
.|.=||+|.-...++.+-...+..|+.+|++++.++.+...+..... . .... ..++.+. .|..+.+
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~~a~- 82 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLAEAV- 82 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHHHHh-
Confidence 46677888644333333333467899999999988887765432210 0 0001 1234432 3332111
Q ss_pred ccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025492 136 NYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT 185 (252)
Q Consensus 136 ~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~ 185 (252)
...|.|+...|..... ...+++++...++++-.|..
T Consensus 83 -----~~aDlVieavpe~~~~---------k~~~~~~l~~~~~~~~ii~s 118 (287)
T PRK08293 83 -----KDADLVIEAVPEDPEI---------KGDFYEELAKVAPEKTIFAT 118 (287)
T ss_pred -----cCCCEEEEeccCCHHH---------HHHHHHHHHhhCCCCCEEEE
Confidence 2468888888765311 12578888888877765543
No 373
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=76.95 E-value=28 Score=30.68 Aligned_cols=94 Identities=12% Similarity=0.127 Sum_probs=55.2
Q ss_pred ceEEEEcC--cccHHHHHHHHHCCCC-eEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEe-CCcccccCccCCCCc
Q 025492 67 IQFADIGC--GFGGLLISLSTLFPEV-LMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVR-TNSMKYIPNYFEKGQ 142 (252)
Q Consensus 67 ~~vLDIGc--G~G~~~~~lA~~~p~~-~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~-~da~~~l~~~~~~~s 142 (252)
..||=.|. |.|..++.+|+.. +. .+++++.+++..+.+.+.+ +.+.+-... .+..+.+.... ...
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~-G~~~Vi~~~~s~~~~~~~~~~l---------Ga~~vi~~~~~~~~~~i~~~~-~~g 224 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL-GCSRVVGICGSDEKCQLLKSEL---------GFDAAINYKTDNVAERLRELC-PEG 224 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHhc---------CCcEEEECCCCCHHHHHHHHC-CCC
Confidence 46777775 5688888899986 55 7999998887655543321 333321111 12211121111 245
Q ss_pred ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
+|.|+-.... ..+....+.|+++|+++..
T Consensus 225 vd~vid~~g~---------------~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 225 VDVYFDNVGG---------------EISDTVISQMNENSHIILC 253 (345)
T ss_pred ceEEEECCCc---------------HHHHHHHHHhccCCEEEEE
Confidence 7777633221 2457788899999998864
No 374
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=76.77 E-value=22 Score=31.36 Aligned_cols=95 Identities=16% Similarity=0.214 Sum_probs=51.5
Q ss_pred eEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccE-EEEeCCcccccCccCCCCcccE
Q 025492 68 QFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNI-SVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 68 ~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv-~~~~~da~~~l~~~~~~~s~d~ 145 (252)
.||=.|+|. |..++.+|+......+++++.++.....+.+ + +.+.+ .....+....+........+|.
T Consensus 169 ~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~------g~~~~v~~~~~~~~~~i~~~~~~~~~d~ 238 (345)
T cd08286 169 TVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKK----L------GATHTVNSAKGDAIEQVLELTDGRGVDV 238 (345)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----h------CCCceeccccccHHHHHHHHhCCCCCCE
Confidence 333367754 5566677777653678889988765544332 1 32221 1111221111222222345777
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
++-.... ...+..+.+.|+++|+++..
T Consensus 239 vld~~g~--------------~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 239 VIEAVGI--------------PATFELCQELVAPGGHIANV 265 (345)
T ss_pred EEECCCC--------------HHHHHHHHHhccCCcEEEEe
Confidence 6633211 13677888999999998864
No 375
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=76.75 E-value=23 Score=31.81 Aligned_cols=41 Identities=22% Similarity=0.211 Sum_probs=28.9
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHH
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVK 106 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~ 106 (252)
...||=+|+|. |..++.+|+......++++|.++...+.+.
T Consensus 185 g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~ 226 (365)
T cd08277 185 GSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAK 226 (365)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 45666678865 666677888764337999999887766553
No 376
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=76.72 E-value=14 Score=32.54 Aligned_cols=90 Identities=19% Similarity=0.155 Sum_probs=55.1
Q ss_pred ceEEEEcCcc--cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 67 IQFADIGCGF--GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 67 ~~vLDIGcG~--G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
.+|+=+|.|- |.++..+........++|.|.+...+..+... + +..-..+.. . .......|
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l----------g---v~d~~~~~~--~--~~~~~~aD 66 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL----------G---VIDELTVAG--L--AEAAAEAD 66 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc----------C---cccccccch--h--hhhcccCC
Confidence 4677788775 55556666667777889999998765544321 1 211111110 0 01234568
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEE
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIY 184 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~ 184 (252)
.|++.-|-.- ...+++++...|++|..+.
T Consensus 67 ~VivavPi~~-----------~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 67 LVIVAVPIEA-----------TEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred EEEEeccHHH-----------HHHHHHHhcccCCCCCEEE
Confidence 8888776543 3468999999999997764
No 377
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=76.28 E-value=23 Score=31.20 Aligned_cols=96 Identities=9% Similarity=0.071 Sum_probs=53.7
Q ss_pred eEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEE-eCCcccccCccCCCCcccE
Q 025492 68 QFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVV-RTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 68 ~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~-~~da~~~l~~~~~~~s~d~ 145 (252)
.||=.|+|. |..++.+|+......+++++.++...+.+.+ + +.+.+--. ..+..+.+........+|.
T Consensus 166 ~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----l------g~~~~~~~~~~~~~~~~~~~~~~~~~d~ 235 (341)
T PRK05396 166 DVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARK----M------GATRAVNVAKEDLRDVMAELGMTEGFDV 235 (341)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----h------CCcEEecCccccHHHHHHHhcCCCCCCE
Confidence 444478776 7777888888643367888877765544332 1 32221111 1111111222222345777
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
|+-.... ...+..+.+.|+++|.+++..
T Consensus 236 v~d~~g~--------------~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 236 GLEMSGA--------------PSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred EEECCCC--------------HHHHHHHHHHHhcCCEEEEEe
Confidence 7642221 247888899999999998864
No 378
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=76.21 E-value=22 Score=31.89 Aligned_cols=41 Identities=22% Similarity=0.182 Sum_probs=29.1
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHH
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVK 106 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~ 106 (252)
...||=+|+|. |..++.+|+......+++++.+++..+.+.
T Consensus 188 g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~ 229 (369)
T cd08301 188 GSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAK 229 (369)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 45666678765 666677888764337999999988766653
No 379
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=76.09 E-value=11 Score=33.89 Aligned_cols=95 Identities=15% Similarity=0.185 Sum_probs=54.5
Q ss_pred CceEEEEcC-cccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccE-EEE-eCCcccccCccCCCCc
Q 025492 66 KIQFADIGC-GFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNI-SVV-RTNSMKYIPNYFEKGQ 142 (252)
Q Consensus 66 ~~~vLDIGc-G~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv-~~~-~~da~~~l~~~~~~~s 142 (252)
...+-=+|- |-|.+++.+|++. +.++++||-+..--+.|.+.+ +.+.. .+. ..|....+... -++-
T Consensus 182 G~~vgI~GlGGLGh~aVq~AKAM-G~rV~vis~~~~kkeea~~~L---------GAd~fv~~~~d~d~~~~~~~~-~dg~ 250 (360)
T KOG0023|consen 182 GKWVGIVGLGGLGHMAVQYAKAM-GMRVTVISTSSKKKEEAIKSL---------GADVFVDSTEDPDIMKAIMKT-TDGG 250 (360)
T ss_pred CcEEEEecCcccchHHHHHHHHh-CcEEEEEeCCchhHHHHHHhc---------CcceeEEecCCHHHHHHHHHh-hcCc
Confidence 445555554 4699999999998 678999999875444443322 33322 111 12222111111 1333
Q ss_pred ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
+|.+. ++ .. .-++.+...||++|++++.-
T Consensus 251 ~~~v~-~~-a~--------------~~~~~~~~~lk~~Gt~V~vg 279 (360)
T KOG0023|consen 251 IDTVS-NL-AE--------------HALEPLLGLLKVNGTLVLVG 279 (360)
T ss_pred ceeee-ec-cc--------------cchHHHHHHhhcCCEEEEEe
Confidence 44443 22 11 26778889999999999864
No 380
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=75.58 E-value=5.6 Score=36.54 Aligned_cols=109 Identities=18% Similarity=0.187 Sum_probs=63.6
Q ss_pred CCCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhc---CCCCcccEEEEeCCcccccCccC--
Q 025492 64 SKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVS---NPGQYQNISVVRTNSMKYIPNYF-- 138 (252)
Q Consensus 64 ~~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~---~~~~~~nv~~~~~da~~~l~~~~-- 138 (252)
.+.+...|+|.|.|......|.-.....=+|+|+....-+.|..+....... -......+..++++... +...
T Consensus 191 g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~--~~~v~e 268 (419)
T KOG3924|consen 191 GPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLD--PKRVTE 268 (419)
T ss_pred CCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCC--HHHHHH
Confidence 3567999999999999888887755555689999887666665543332211 11123346777777532 1111
Q ss_pred CCCcccEEEEeC--CCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025492 139 EKGQLTKMFFLF--PDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT 185 (252)
Q Consensus 139 ~~~s~d~i~~~f--pdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~ 185 (252)
-....+.|++|- -||--+ -=+.++..-+++|=+++-
T Consensus 269 I~~eatvi~vNN~~Fdp~L~-----------lr~~eil~~ck~gtrIiS 306 (419)
T KOG3924|consen 269 IQTEATVIFVNNVAFDPELK-----------LRSKEILQKCKDGTRIIS 306 (419)
T ss_pred HhhcceEEEEecccCCHHHH-----------HhhHHHHhhCCCcceEec
Confidence 123456777652 133221 123366677788777654
No 381
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=75.51 E-value=30 Score=31.97 Aligned_cols=55 Identities=9% Similarity=0.056 Sum_probs=37.5
Q ss_pred eEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCccc
Q 025492 68 QFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMK 132 (252)
Q Consensus 68 ~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~ 132 (252)
.||=||||. |...+....++.+.+++..|.+.+.++.+... ...+++.+..|+.+
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~----------~~~~v~~~~vD~~d 58 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAEL----------IGGKVEALQVDAAD 58 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhh----------ccccceeEEecccC
Confidence 588999976 55555554445558999999998765544332 23378888888763
No 382
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=75.28 E-value=27 Score=31.42 Aligned_cols=93 Identities=14% Similarity=0.163 Sum_probs=50.4
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
...||=+|+|. |..++.+|+.. +..+++++.+......+.+ . .+.+.+ +...+.. .+.... +.+|
T Consensus 184 g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~~~~~~---~------~Ga~~v-i~~~~~~-~~~~~~--~~~D 249 (360)
T PLN02586 184 GKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKEDEAIN---R------LGADSF-LVSTDPE-KMKAAI--GTMD 249 (360)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchhhhHHH---h------CCCcEE-EcCCCHH-HHHhhc--CCCC
Confidence 34555589876 77777888876 5578888887653222211 1 133211 1011111 111111 2367
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
.++-.... ...+....+.|++||++++.
T Consensus 250 ~vid~~g~--------------~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 250 YIIDTVSA--------------VHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred EEEECCCC--------------HHHHHHHHHHhcCCcEEEEe
Confidence 66643221 13677788999999998865
No 383
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=74.95 E-value=54 Score=28.89 Aligned_cols=117 Identities=11% Similarity=0.051 Sum_probs=61.4
Q ss_pred EEcCcc-cHHHHHHHHHCCC-CeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEe-CCcccccCccCCCCcccEEE
Q 025492 71 DIGCGF-GGLLISLSTLFPE-VLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVR-TNSMKYIPNYFEKGQLTKMF 147 (252)
Q Consensus 71 DIGcG~-G~~~~~lA~~~p~-~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~-~da~~~l~~~~~~~s~d~i~ 147 (252)
=||||. |..+.......+- ..++.+|++++.+.....-+... ... ..+..+.. .|.. .+ ...|.|+
T Consensus 3 iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~---~~~-~~~~~i~~~~~~~-~l------~~aDiVI 71 (300)
T cd00300 3 IIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHA---SAF-LATGTIVRGGDYA-DA------ADADIVV 71 (300)
T ss_pred EECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHh---ccc-cCCCeEEECCCHH-Hh------CCCCEEE
Confidence 378887 4444433333332 46999999887543322222221 111 12334433 3322 22 2357777
Q ss_pred EeCCCCcccccccccc---ccCHHHHHHHHHhhc---CCcEEEEEeCchHHHHHHHHHH
Q 025492 148 FLFPDPHFKEKNHRRR---VISPHLLDEYAYVLG---VGGIIYTITDVEELGDWMRSCL 200 (252)
Q Consensus 148 ~~fpdP~~k~~h~krr---~~~~~~l~~~~~~Lk---pgG~l~~~td~~~~~~~~~~~~ 200 (252)
+....|.-. ...|. ..+..+++++...++ |+|.+++.|+..+...+.....
T Consensus 72 itag~p~~~--~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d~~~~~~~~~ 128 (300)
T cd00300 72 ITAGAPRKP--GETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDILTYVAQKL 128 (300)
T ss_pred EcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHHHHHHHHHHH
Confidence 766555421 11111 123445666666554 8999999998777766665554
No 384
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=74.87 E-value=6.7 Score=31.02 Aligned_cols=101 Identities=18% Similarity=0.103 Sum_probs=54.7
Q ss_pred EEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCC-CcccEEEEeCCcccccCccCCCCcccEEE
Q 025492 69 FADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPG-QYQNISVVRTNSMKYIPNYFEKGQLTKMF 147 (252)
Q Consensus 69 vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~-~~~nv~~~~~da~~~l~~~~~~~s~d~i~ 147 (252)
|.=||+|++.++++..-...+.+|+-...+++.++..++.-......... ...|+.+ ..|..+.+. ..|.|+
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~~------~ad~Ii 74 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEALE------DADIII 74 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHHT------T-SEEE
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHhC------cccEEE
Confidence 44578888777665444444567888888886655433211000000001 1125544 456543332 347888
Q ss_pred EeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 148 FLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 148 ~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
+.-|.... +.+++++...|+++-.+++.+
T Consensus 75 iavPs~~~-----------~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 75 IAVPSQAH-----------REVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp E-S-GGGH-----------HHHHHHHTTTSHTT-EEEETS
T ss_pred ecccHHHH-----------HHHHHHHhhccCCCCEEEEec
Confidence 77665332 368999999998887777755
No 385
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=74.45 E-value=11 Score=33.61 Aligned_cols=48 Identities=21% Similarity=0.221 Sum_probs=36.5
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVS 115 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~ 115 (252)
+-+|+-||+|...++..|++. | ..++.||+++..|...+-++.+.|..
T Consensus 64 ghrivtigSGGcn~L~ylsr~-P-a~id~VDlN~ahiAln~lklaA~R~L 111 (414)
T COG5379 64 GHRIVTIGSGGCNMLAYLSRA-P-ARIDVVDLNPAHIALNRLKLAAFRHL 111 (414)
T ss_pred CcEEEEecCCcchHHHHhhcC-C-ceeEEEeCCHHHHHHHHHHHHHHhhc
Confidence 448999999965566666655 5 47999999999888777777776654
No 386
>PLN02702 L-idonate 5-dehydrogenase
Probab=74.33 E-value=32 Score=30.73 Aligned_cols=98 Identities=13% Similarity=0.134 Sum_probs=54.6
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEe---CCcccccCcc--CC
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVR---TNSMKYIPNY--FE 139 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~---~da~~~l~~~--~~ 139 (252)
...||=+|+|. |..++.+|+...-..+++++.++...+.+.+ . +.+.+.... .+..+.+... ..
T Consensus 182 g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~------g~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (364)
T PLN02702 182 ETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQ----L------GADEIVLVSTNIEDVESEVEEIQKAM 251 (364)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----h------CCCEEEecCcccccHHHHHHHHhhhc
Confidence 34566668763 6677788888644458899988766554332 1 333222211 1221111111 11
Q ss_pred CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 140 KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 140 ~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
...+|.|+-.... ...+..+.+.|+++|+++...
T Consensus 252 ~~~~d~vid~~g~--------------~~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 252 GGGIDVSFDCVGF--------------NKTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred CCCCCEEEECCCC--------------HHHHHHHHHHHhcCCEEEEEc
Confidence 2357776643221 147888999999999988653
No 387
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=74.26 E-value=19 Score=31.76 Aligned_cols=90 Identities=20% Similarity=0.196 Sum_probs=49.8
Q ss_pred eEEEEcCcc-cH-HHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 68 QFADIGCGF-GG-LLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 68 ~vLDIGcG~-G~-~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
.|.=||+|. |. ++..++.......++++|.+++.++.+.+ . +.. .. ...+..+ .+ ...|.
T Consensus 8 ~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~------g~~-~~-~~~~~~~----~~--~~aDv 69 (307)
T PRK07502 8 RVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE----L------GLG-DR-VTTSAAE----AV--KGADL 69 (307)
T ss_pred EEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----C------CCC-ce-ecCCHHH----Hh--cCCCE
Confidence 577789887 32 22333333222479999999876554431 1 211 01 1122211 11 24688
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
|++.-|.+.. ..+++.+...+++|+.+...
T Consensus 70 Viiavp~~~~-----------~~v~~~l~~~l~~~~iv~dv 99 (307)
T PRK07502 70 VILCVPVGAS-----------GAVAAEIAPHLKPGAIVTDV 99 (307)
T ss_pred EEECCCHHHH-----------HHHHHHHHhhCCCCCEEEeC
Confidence 8887765431 25777788888898866543
No 388
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=74.24 E-value=23 Score=32.75 Aligned_cols=123 Identities=10% Similarity=0.143 Sum_probs=64.3
Q ss_pred EEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc--------c--cEEEEeCCcccccCccC
Q 025492 69 FADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY--------Q--NISVVRTNSMKYIPNYF 138 (252)
Q Consensus 69 vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~--------~--nv~~~~~da~~~l~~~~ 138 (252)
|--||+|.=.+.....-..-+..|+++|+++.-++..+....-. .+.++ . ++.| ..|....+
T Consensus 3 I~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI---~EpgLe~ll~~~~~~gRl~f-Ttd~~~a~---- 74 (414)
T COG1004 3 ITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPI---YEPGLEELLKENLASGRLRF-TTDYEEAV---- 74 (414)
T ss_pred eEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCC---cCccHHHHHHhccccCcEEE-EcCHHHHH----
Confidence 44578877444433333322578999999998776554321000 01111 1 1333 23332222
Q ss_pred CCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC-chHHHHHHHHHHhc
Q 025492 139 EKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD-VEELGDWMRSCLEN 202 (252)
Q Consensus 139 ~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td-~~~~~~~~~~~~~~ 202 (252)
...|.+++.-|.|.-+..+..-+.+ ....+.+...|+..-.+++++= ..-..+++.+.+..
T Consensus 75 --~~adv~fIavgTP~~~dg~aDl~~V-~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~ 136 (414)
T COG1004 75 --KDADVVFIAVGTPPDEDGSADLSYV-EAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIRE 136 (414)
T ss_pred --hcCCEEEEEcCCCCCCCCCccHHHH-HHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHh
Confidence 2457888888888765554433222 2355556666665556666543 34456666666543
No 389
>PTZ00357 methyltransferase; Provisional
Probab=74.12 E-value=23 Score=35.28 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=62.5
Q ss_pred ceEEEEcCcccHHHHHHHHH----CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCC-----cccEEEEeCCcccccCcc
Q 025492 67 IQFADIGCGFGGLLISLSTL----FPEVLMIGMELRDKVTEYVKERILALRVSNPGQ-----YQNISVVRTNSMKYIPNY 137 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~----~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~-----~~nv~~~~~da~~~l~~~ 137 (252)
-+|+=+|+|-|-+.-...+. .-...+++||.++..+.....+.... ..... -..|.++..|... +...
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~--eeW~n~~~~~G~~VtII~sDMR~-W~~p 778 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWAND--PEWTQLAYTFGHTLEVIVADGRT-IATA 778 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcc--cccccccccCCCeEEEEeCcccc-cccc
Confidence 37899999999887544443 33568999999976543443322110 00111 2349999999874 4211
Q ss_pred C-------C--CCcccEEEE----eCCCCccccccccccccCHHHHHHHHHhhcC----CcE
Q 025492 138 F-------E--KGQLTKMFF----LFPDPHFKEKNHRRRVISPHLLDEYAYVLGV----GGI 182 (252)
Q Consensus 138 ~-------~--~~s~d~i~~----~fpdP~~k~~h~krr~~~~~~l~~~~~~Lkp----gG~ 182 (252)
. + -+.+|.|+. .|-|-- ++++-|.-+.+.||+ +|.
T Consensus 779 e~~~s~~~P~~~gKaDIVVSELLGSFGDNE----------LSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 779 AENGSLTLPADFGLCDLIVSELLGSLGDNE----------LSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccccccceehHhhhccccccc----------CCHHHHHHHHHhhhhhcccccc
Confidence 0 0 124666653 233322 567899999999987 786
No 390
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=74.01 E-value=1.9 Score=36.82 Aligned_cols=117 Identities=15% Similarity=0.173 Sum_probs=68.3
Q ss_pred ceEEEEcCcccHHHHHHHHHC----C-C-C---eEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCccc-----
Q 025492 67 IQFADIGCGFGGLLISLSTLF----P-E-V---LMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMK----- 132 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~----p-~-~---~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~----- 132 (252)
.+++|+....|.++..|+++. + . . .+++||+.+- ..++.|.-+++|+..
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------------aPI~GV~qlq~DIT~~stae 105 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------------APIEGVIQLQGDITSASTAE 105 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------------CccCceEEeecccCCHhHHH
Confidence 479999999999999999872 1 1 1 3899998542 256677888888752
Q ss_pred ccCccCCCCcccEEEEeC-CCCccccccccccccCHH----HHHHHHHhhcCCcEEEEEe----CchHHHHHHHHHHhc
Q 025492 133 YIPNYFEKGQLTKMFFLF-PDPHFKEKNHRRRVISPH----LLDEYAYVLGVGGIIYTIT----DVEELGDWMRSCLEN 202 (252)
Q Consensus 133 ~l~~~~~~~s~d~i~~~f-pdP~~k~~h~krr~~~~~----~l~~~~~~LkpgG~l~~~t----d~~~~~~~~~~~~~~ 202 (252)
.+-..|.....|.|+..- || ..--|.-.-.++.+ .|.....+|||||.|+-.. |..-++..|..-+..
T Consensus 106 ~Ii~hfggekAdlVvcDGAPD--vTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslLysql~~ff~k 182 (294)
T KOG1099|consen 106 AIIEHFGGEKADLVVCDGAPD--VTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLLYSQLRKFFKK 182 (294)
T ss_pred HHHHHhCCCCccEEEeCCCCC--ccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHHHHHHHHHHhhc
Confidence 111234444566666532 22 11112211112222 4555678999999997643 333444444444443
No 391
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=73.88 E-value=38 Score=30.63 Aligned_cols=98 Identities=15% Similarity=0.098 Sum_probs=53.4
Q ss_pred ceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC----CcccccCccCCCC
Q 025492 67 IQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT----NSMKYIPNYFEKG 141 (252)
Q Consensus 67 ~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~----da~~~l~~~~~~~ 141 (252)
..||=.|||. |..++.+|+......+++++.++...+.+.+ . +.+.+--... +....+.......
T Consensus 205 ~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~----~------g~~~~v~~~~~~~~~~~~~v~~~~~g~ 274 (384)
T cd08265 205 AYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKE----M------GADYVFNPTKMRDCLSGEKVMEVTKGW 274 (384)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----c------CCCEEEcccccccccHHHHHHHhcCCC
Confidence 4455558765 5556667777643379999988765443332 1 3322211110 1111122223334
Q ss_pred cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
.+|.|+-....+ ...+....+.|+++|+++...
T Consensus 275 gvDvvld~~g~~-------------~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 275 GADIQVEAAGAP-------------PATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred CCCEEEECCCCc-------------HHHHHHHHHHHHcCCEEEEEC
Confidence 578766433221 136788889999999998754
No 392
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=73.73 E-value=24 Score=28.38 Aligned_cols=91 Identities=16% Similarity=0.191 Sum_probs=53.0
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
+..|.=||+|. |.-...+++.+ +..++++|.+...... ... ..+ -..+..+.+. ..|
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~~f-G~~V~~~d~~~~~~~~----~~~---------~~~--~~~~l~ell~------~aD 93 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLKAF-GMRVIGYDRSPKPEEG----ADE---------FGV--EYVSLDELLA------QAD 93 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHHHT-T-EEEEEESSCHHHHH----HHH---------TTE--EESSHHHHHH------H-S
T ss_pred CCEEEEEEEcCCcCeEeeeeecC-CceeEEecccCChhhh----ccc---------ccc--eeeehhhhcc------hhh
Confidence 45789999986 66666666666 6799999999874331 111 112 2234433332 468
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
.|+++.|.-- ..+.+++.++|+ .||+|..|+=..
T Consensus 94 iv~~~~plt~-----~T~~li~~~~l~----~mk~ga~lvN~a 127 (178)
T PF02826_consen 94 IVSLHLPLTP-----ETRGLINAEFLA----KMKPGAVLVNVA 127 (178)
T ss_dssp EEEE-SSSST-----TTTTSBSHHHHH----TSTTTEEEEESS
T ss_pred hhhhhhcccc-----ccceeeeeeeee----ccccceEEEecc
Confidence 9998887321 123456666554 678888776544
No 393
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=73.73 E-value=40 Score=28.53 Aligned_cols=90 Identities=13% Similarity=0.121 Sum_probs=54.0
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCCe-EEEEecCHhHHHHHHHHHHHHhhcCCCC-cccEEEEeCCcccccCccCCCCc
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEVL-MIGMELRDKVTEYVKERILALRVSNPGQ-YQNISVVRTNSMKYIPNYFEKGQ 142 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~-~iGiDis~~~i~~a~~~~~~~~~~~~~~-~~nv~~~~~da~~~l~~~~~~~s 142 (252)
...+|=.|||. |..++.+|+... .. +++++.+++..+.+.+. + ...+ +... ........
T Consensus 98 g~~vlI~g~g~vg~~~i~~a~~~g-~~~vi~~~~~~~~~~~~~~~----------g~~~~~--~~~~-----~~~~~~~~ 159 (277)
T cd08255 98 GERVAVVGLGLVGLLAAQLAKAAG-AREVVGVDPDAARRELAEAL----------GPADPV--AADT-----ADEIGGRG 159 (277)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC-CCcEEEECCCHHHHHHHHHc----------CCCccc--cccc-----hhhhcCCC
Confidence 34666679877 778888888864 55 99999888766544321 2 1111 0000 00112345
Q ss_pred ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
+|.++-.-.. ...+....+.|+++|.++...
T Consensus 160 ~d~vl~~~~~--------------~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 160 ADVVIEASGS--------------PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred CCEEEEccCC--------------hHHHHHHHHHhcCCcEEEEEe
Confidence 7776643211 247788889999999998754
No 394
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=73.67 E-value=35 Score=29.84 Aligned_cols=94 Identities=12% Similarity=0.045 Sum_probs=55.6
Q ss_pred CceEEEEcC--cccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC--CcccccCccCCCC
Q 025492 66 KIQFADIGC--GFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT--NSMKYIPNYFEKG 141 (252)
Q Consensus 66 ~~~vLDIGc--G~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~--da~~~l~~~~~~~ 141 (252)
...||=.|. |.|..++.+|+.. +..+++++.+++..+.+.+ + +.+.+--... +..+.+.. ....
T Consensus 139 g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~~----l------Ga~~vi~~~~~~~~~~~~~~-~~~~ 206 (325)
T TIGR02825 139 GETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLKK----L------GFDVAFNYKTVKSLEETLKK-ASPD 206 (325)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----c------CCCEEEeccccccHHHHHHH-hCCC
Confidence 456777773 5688888899886 5679999988876655532 1 4332211111 11111111 1123
Q ss_pred cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
.+|.++-... ...+....+.|+++|+++..
T Consensus 207 gvdvv~d~~G---------------~~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 207 GYDCYFDNVG---------------GEFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred CeEEEEECCC---------------HHHHHHHHHHhCcCcEEEEe
Confidence 4776663321 13567888999999999875
No 395
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=73.24 E-value=28 Score=30.79 Aligned_cols=98 Identities=16% Similarity=0.052 Sum_probs=53.5
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccE-EEEeCCcccccCccCCCCcc
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNI-SVVRTNSMKYIPNYFEKGQL 143 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv-~~~~~da~~~l~~~~~~~s~ 143 (252)
...||=.|+|. |..++.+|+...-..+++++.++...+.+.+ . +.+.+ .....+..+.+........+
T Consensus 173 g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~----~------ga~~~i~~~~~~~~~~l~~~~~~~~~ 242 (351)
T cd08233 173 GDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE----L------GATIVLDPTEVDVVAEVRKLTGGGGV 242 (351)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----h------CCCEEECCCccCHHHHHHHHhCCCCC
Confidence 34555567653 6666777777633378999988876655432 1 22211 11111211112112222347
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
|.++-.... ...++.+.+.|+++|+++...
T Consensus 243 d~vid~~g~--------------~~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 243 DVSFDCAGV--------------QATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred CEEEECCCC--------------HHHHHHHHHhccCCCEEEEEc
Confidence 777654321 136778888999999988753
No 396
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=73.16 E-value=32 Score=30.10 Aligned_cols=97 Identities=11% Similarity=0.163 Sum_probs=52.3
Q ss_pred ceEEEEcCc-ccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 67 IQFADIGCG-FGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 67 ~~vLDIGcG-~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
..||=.|+| .|..++.+|+......+++++-++...+.+. .. +.+.+--...+....+........+|.
T Consensus 169 ~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~----~~------g~~~~~~~~~~~~~~i~~~~~~~~~dv 238 (340)
T cd05284 169 STVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAE----RL------GADHVLNASDDVVEEVRELTGGRGADA 238 (340)
T ss_pred CEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHH----Hh------CCcEEEcCCccHHHHHHHHhCCCCCCE
Confidence 455555654 3556666777764468889988876554432 11 322111111111111211122235777
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
++-.... ...++...+.|+++|+++...
T Consensus 239 vld~~g~--------------~~~~~~~~~~l~~~g~~i~~g 266 (340)
T cd05284 239 VIDFVGS--------------DETLALAAKLLAKGGRYVIVG 266 (340)
T ss_pred EEEcCCC--------------HHHHHHHHHHhhcCCEEEEEc
Confidence 7654322 147788889999999998653
No 397
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=73.11 E-value=30 Score=31.86 Aligned_cols=108 Identities=13% Similarity=0.123 Sum_probs=53.1
Q ss_pred EEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCC----------cccEEEEeCCcccccCccC
Q 025492 69 FADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQ----------YQNISVVRTNSMKYIPNYF 138 (252)
Q Consensus 69 vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~----------~~nv~~~~~da~~~l~~~~ 138 (252)
|-=||+|.=...++.+-...+..|+|+|+++..++..++.... ....+ ..++.+. .|..+.+
T Consensus 3 I~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~---~~e~~l~~~~~~~~~~g~l~~~-~~~~~~~---- 74 (411)
T TIGR03026 3 IAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSP---IYEPGLDELLAKALAAGRLRAT-TDYEDAI---- 74 (411)
T ss_pred EEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCC---CCCCCHHHHHHHhhhcCCeEEE-CCHHHHH----
Confidence 4447888644443333333467899999999876543210000 00000 1123321 2222111
Q ss_pred CCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 139 EKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 139 ~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
...|.|++..|+|........-+.+ ...++.+...|++|-.++..|
T Consensus 75 --~~advvii~vpt~~~~~~~~d~~~v-~~~~~~i~~~l~~g~lvi~~S 120 (411)
T TIGR03026 75 --RDADVIIICVPTPLKEDGSPDLSYV-ESAAETIAKHLRKGATVVLES 120 (411)
T ss_pred --hhCCEEEEEeCCCCCCCCCcChHHH-HHHHHHHHHhcCCCCEEEEeC
Confidence 2468999998888532111100001 134566777788877666544
No 398
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=72.70 E-value=23 Score=32.74 Aligned_cols=93 Identities=8% Similarity=-0.026 Sum_probs=54.7
Q ss_pred EEEEcCcccHHHHHHHHH--CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccc--cCccCCCCccc
Q 025492 69 FADIGCGFGGLLISLSTL--FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKY--IPNYFEKGQLT 144 (252)
Q Consensus 69 vLDIGcG~G~~~~~lA~~--~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~--l~~~~~~~s~d 144 (252)
|+=+|| |.++..+|+. ..+..++++|.+++.++.+.+ ...+.++.+|+.+. +.. ..-...|
T Consensus 3 viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~------------~~~~~~~~gd~~~~~~l~~-~~~~~a~ 67 (453)
T PRK09496 3 IIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQD------------RLDVRTVVGNGSSPDVLRE-AGAEDAD 67 (453)
T ss_pred EEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHh------------hcCEEEEEeCCCCHHHHHH-cCCCcCC
Confidence 455565 6777777775 236789999999876544321 11477888887531 111 1134678
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
.|++..++.... .++....+.+.|.-.++..+
T Consensus 68 ~vi~~~~~~~~n-----------~~~~~~~r~~~~~~~ii~~~ 99 (453)
T PRK09496 68 LLIAVTDSDETN-----------MVACQIAKSLFGAPTTIARV 99 (453)
T ss_pred EEEEecCChHHH-----------HHHHHHHHHhcCCCeEEEEE
Confidence 888877765421 34445556665555555544
No 399
>PRK10206 putative oxidoreductase; Provisional
Probab=72.65 E-value=25 Score=31.64 Aligned_cols=70 Identities=13% Similarity=0.029 Sum_probs=37.6
Q ss_pred eEEEEcCcc-cH--HHHHHHHHCCCCeEEE-EecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025492 68 QFADIGCGF-GG--LLISLSTLFPEVLMIG-MELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL 143 (252)
Q Consensus 68 ~vLDIGcG~-G~--~~~~lA~~~p~~~~iG-iDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~ 143 (252)
.|-=||||. +. ++..+....++..++| +|.+++..+.+ .. ...+.+ ..|..+ .+.+..+
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~----~~--------~~~~~~-~~~~~e----ll~~~~i 65 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQA----PI--------YSHIHF-TSDLDE----VLNDPDV 65 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHH----Hh--------cCCCcc-cCCHHH----HhcCCCC
Confidence 466799996 32 3333434445677776 66665432111 11 112222 234443 3446689
Q ss_pred cEEEEeCCCCc
Q 025492 144 TKMFFLFPDPH 154 (252)
Q Consensus 144 d~i~~~fpdP~ 154 (252)
|.|++.-|...
T Consensus 66 D~V~I~tp~~~ 76 (344)
T PRK10206 66 KLVVVCTHADS 76 (344)
T ss_pred CEEEEeCCchH
Confidence 99999877654
No 400
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=71.84 E-value=3.3 Score=36.31 Aligned_cols=36 Identities=17% Similarity=0.066 Sum_probs=28.5
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHH
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVT 102 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i 102 (252)
..+|||+|||.|.-.+...... ...+...|.+...+
T Consensus 117 ~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 117 GKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVL 152 (282)
T ss_pred CceeEecCCcccccchhhhhhc-cceeeeEecchhhe
Confidence 3589999999999888888774 26778888887665
No 401
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=71.40 E-value=17 Score=31.34 Aligned_cols=93 Identities=18% Similarity=0.229 Sum_probs=52.8
Q ss_pred HHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEEEeCCCCccccc
Q 025492 79 LLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEK 158 (252)
Q Consensus 79 ~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~ 158 (252)
++.+|.+..++..++|+|.++..++.|.+. +.-.- ...+ .+.+. ..|.|++.-|-.-
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~----------g~~~~--~~~~-~~~~~------~~DlvvlavP~~~---- 57 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALEL----------GIIDE--ASTD-IEAVE------DADLVVLAVPVSA---- 57 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHT----------TSSSE--EESH-HHHGG------CCSEEEE-S-HHH----
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHC----------CCeee--ccCC-HhHhc------CCCEEEEcCCHHH----
Confidence 356777888889999999999887665421 32211 1111 11122 3488888765332
Q ss_pred cccccccCHHHHHHHHHhhcCCcEEEEEeCch-HHHHHHHHHHh
Q 025492 159 NHRRRVISPHLLDEYAYVLGVGGIIYTITDVE-ELGDWMRSCLE 201 (252)
Q Consensus 159 h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~-~~~~~~~~~~~ 201 (252)
...+++++...|++|+.+.=.+-.+ .....+.+.+.
T Consensus 58 -------~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~ 94 (258)
T PF02153_consen 58 -------IEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLP 94 (258)
T ss_dssp -------HHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHT
T ss_pred -------HHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcC
Confidence 2369999999999998876555443 44445555444
No 402
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=71.07 E-value=42 Score=29.80 Aligned_cols=96 Identities=11% Similarity=0.036 Sum_probs=52.0
Q ss_pred ceEEEEcCcc-cHHHHHHHHHCCCC-eEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC-Ccc---cccCccCCC
Q 025492 67 IQFADIGCGF-GGLLISLSTLFPEV-LMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT-NSM---KYIPNYFEK 140 (252)
Q Consensus 67 ~~vLDIGcG~-G~~~~~lA~~~p~~-~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~-da~---~~l~~~~~~ 140 (252)
..||=.|+|. |..++.+|+.. +. .+++++.++...+.+. .+ +.+.+.-... +.. ..+......
T Consensus 179 ~~vlI~g~g~vG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~----~~------g~~~vi~~~~~~~~~~~~~i~~~~~~ 247 (361)
T cd08231 179 DTVVVQGAGPLGLYAVAAAKLA-GARRVIVIDGSPERLELAR----EF------GADATIDIDELPDPQRRAIVRDITGG 247 (361)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHH----Hc------CCCeEEcCcccccHHHHHHHHHHhCC
Confidence 3455567764 66667777776 45 8999998876554432 11 3332211111 100 011111222
Q ss_pred CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
..+|.++-.... ...+....+.|+++|++++..
T Consensus 248 ~~~d~vid~~g~--------------~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 248 RGADVVIEASGH--------------PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred CCCcEEEECCCC--------------hHHHHHHHHHhccCCEEEEEc
Confidence 357766533211 136778889999999998754
No 403
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=70.77 E-value=39 Score=24.71 Aligned_cols=106 Identities=13% Similarity=0.091 Sum_probs=63.4
Q ss_pred eEEEEcCcccHHH--HHHHHHCCCCeEEE-EecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 68 QFADIGCGFGGLL--ISLSTLFPEVLMIG-MELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 68 ~vLDIGcG~G~~~--~~lA~~~p~~~~iG-iDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
.|.=||+|..... ..+....++..++| +|.+++..+.+.+. .+.+ ...|..+.+ ....+|
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~---------~~~~----~~~~~~~ll----~~~~~D 64 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK---------YGIP----VYTDLEELL----ADEDVD 64 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH---------TTSE----EESSHHHHH----HHTTES
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH---------hccc----chhHHHHHH----HhhcCC
Confidence 3667899764322 23444457777764 68887655443221 2333 555655433 345799
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe---CchHHHHHHHHHHhcCC
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT---DVEELGDWMRSCLENHP 204 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t---d~~~~~~~~~~~~~~~~ 204 (252)
.|++.-|+.. -...+...|+-|-.+++-- .+.+-...+.+....++
T Consensus 65 ~V~I~tp~~~--------------h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~ 113 (120)
T PF01408_consen 65 AVIIATPPSS--------------HAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKG 113 (120)
T ss_dssp EEEEESSGGG--------------HHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHT
T ss_pred EEEEecCCcc--------------hHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhC
Confidence 9999887644 4455666777787777753 34556666666665544
No 404
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=70.03 E-value=45 Score=29.38 Aligned_cols=95 Identities=13% Similarity=0.182 Sum_probs=51.6
Q ss_pred eEEEEcCc-ccHHHHHHHHHCCCCe-EEEEecCHhHHHHHHHHHHHHhhcCCCCcccEE-EEeCCcccccCccCCCCccc
Q 025492 68 QFADIGCG-FGGLLISLSTLFPEVL-MIGMELRDKVTEYVKERILALRVSNPGQYQNIS-VVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 68 ~vLDIGcG-~G~~~~~lA~~~p~~~-~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~-~~~~da~~~l~~~~~~~s~d 144 (252)
.||-.|+| .|..++.+|+.. +.. +++++-++...+.+.+ + +...+. ....+..+.+........+|
T Consensus 164 ~vlI~~~g~vg~~a~~la~~~-G~~~v~~~~~~~~~~~~~~~----~------g~~~~v~~~~~~~~~~l~~~~~~~~~d 232 (340)
T TIGR00692 164 SVLVTGAGPIGLMAIAVAKAS-GAYPVIVSDPNEYRLELAKK----M------GATYVVNPFKEDVVKEVADLTDGEGVD 232 (340)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH----h------CCcEEEcccccCHHHHHHHhcCCCCCC
Confidence 34446776 366777788876 454 8888777655443321 1 322111 11122211121122234577
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
.++-... ....+..+.+.|+++|+++...
T Consensus 233 ~vld~~g--------------~~~~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 233 VFLEMSG--------------APKALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred EEEECCC--------------CHHHHHHHHHhhcCCCEEEEEc
Confidence 7764321 1247788899999999987764
No 405
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=68.98 E-value=9.3 Score=32.58 Aligned_cols=59 Identities=12% Similarity=0.112 Sum_probs=41.4
Q ss_pred CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcc
Q 025492 65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSM 131 (252)
Q Consensus 65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~ 131 (252)
++.-|.|||-|.|.++..+..+.- .++..||++...+.-.+.. .+ .......+.++|+.
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~~-~RL~vVE~D~RFip~LQ~L-~E------Aa~~~~~IHh~D~L 108 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNADV-ARLLVVEKDTRFIPGLQML-SE------AAPGKLRIHHGDVL 108 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcch-hheeeeeeccccChHHHHH-hh------cCCcceEEeccccc
Confidence 356899999999999999988743 3677888888766544432 22 13346777778764
No 406
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=68.31 E-value=53 Score=28.67 Aligned_cols=95 Identities=15% Similarity=0.154 Sum_probs=53.6
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC--CcccccCccCCCCc
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT--NSMKYIPNYFEKGQ 142 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~--da~~~l~~~~~~~s 142 (252)
...||=.|||. |..++.+|+...+.++++++-+++..+.+.+ + +.+.+--... +....+.... +.
T Consensus 163 g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~-~---------g~~~v~~~~~~~~~~~~v~~~~--~~ 230 (338)
T PRK09422 163 GQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKE-V---------GADLTINSKRVEDVAKIIQEKT--GG 230 (338)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH-c---------CCcEEecccccccHHHHHHHhc--CC
Confidence 34566667653 6777778886446789999998887666532 1 3322211110 1111111111 13
Q ss_pred ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
+|.+++... ....+....+.|+++|.++..
T Consensus 231 ~d~vi~~~~--------------~~~~~~~~~~~l~~~G~~v~~ 260 (338)
T PRK09422 231 AHAAVVTAV--------------AKAAFNQAVDAVRAGGRVVAV 260 (338)
T ss_pred CcEEEEeCC--------------CHHHHHHHHHhccCCCEEEEE
Confidence 564544321 224788899999999998865
No 407
>PRK06223 malate dehydrogenase; Reviewed
Probab=68.28 E-value=83 Score=27.56 Aligned_cols=123 Identities=12% Similarity=0.072 Sum_probs=61.6
Q ss_pred eEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEe-CCcccccCccCCCCcccE
Q 025492 68 QFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVR-TNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 68 ~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~-~da~~~l~~~~~~~s~d~ 145 (252)
.|.=||+|. |......+....-..++.+|++++..+ +. .............+.++.. .|.. . + ...|.
T Consensus 4 KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~-~~--~~dl~~~~~~~~~~~~i~~~~d~~-~----~--~~aDi 73 (307)
T PRK06223 4 KISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQ-GK--ALDIAEAAPVEGFDTKITGTNDYE-D----I--AGSDV 73 (307)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhH-HH--HHHHHhhhhhcCCCcEEEeCCCHH-H----H--CCCCE
Confidence 577899988 665555444432128999999887542 21 1111100001111233322 3322 1 2 24588
Q ss_pred EEEeCCCCccccccc-----cccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHh
Q 025492 146 MFFLFPDPHFKEKNH-----RRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLE 201 (252)
Q Consensus 146 i~~~fpdP~~k~~h~-----krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~ 201 (252)
|++....|+-..... ..--+-..+++.+.+.. |++.+++.|+..+...++.....
T Consensus 74 Vii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~d~~~~~~~~~s 133 (307)
T PRK06223 74 VVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVTNPVDAMTYVALKES 133 (307)
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHHh
Confidence 887766665221100 00001123444444443 78899999988777777665543
No 408
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=67.73 E-value=13 Score=34.06 Aligned_cols=61 Identities=10% Similarity=0.090 Sum_probs=49.1
Q ss_pred CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCccc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMK 132 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~ 132 (252)
++.|+|+.|-.|.-+.++|...+ ...+.|+|.+.+..+.-+..+.. .+..++..+.+|...
T Consensus 214 g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~------ag~~~~~~~~~df~~ 275 (413)
T KOG2360|consen 214 GSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKI------AGVSIVESVEGDFLN 275 (413)
T ss_pred CCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHH------cCCCccccccccccC
Confidence 46899999999999999999854 66899999999877666655543 478888888888763
No 409
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=67.62 E-value=45 Score=29.28 Aligned_cols=93 Identities=10% Similarity=0.099 Sum_probs=51.2
Q ss_pred eEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC---CcccccCccCCCCcc
Q 025492 68 QFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT---NSMKYIPNYFEKGQL 143 (252)
Q Consensus 68 ~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~---da~~~l~~~~~~~s~ 143 (252)
+++ .|||. |..++.+|+...-..+++++.++...+.+.+ . +.+ .++.. +..+.+........+
T Consensus 172 vlI-~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~------ga~--~v~~~~~~~~~~~i~~~~~~~~~ 238 (345)
T cd08287 172 VVV-VGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALARE----F------GAT--DIVAERGEEAVARVRELTGGVGA 238 (345)
T ss_pred EEE-ECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----c------CCc--eEecCCcccHHHHHHHhcCCCCC
Confidence 455 78865 7777788888644358999988754433321 1 322 11111 111111111223346
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
|.++-.... ...+..+.+.|+++|++....
T Consensus 239 d~il~~~g~--------------~~~~~~~~~~l~~~g~~v~~g 268 (345)
T cd08287 239 DAVLECVGT--------------QESMEQAIAIARPGGRVGYVG 268 (345)
T ss_pred CEEEECCCC--------------HHHHHHHHHhhccCCEEEEec
Confidence 766532211 247888899999999887753
No 410
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=66.64 E-value=59 Score=29.03 Aligned_cols=97 Identities=13% Similarity=0.124 Sum_probs=59.5
Q ss_pred CceEEEEc--CcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc-EEEEeCCcccccCccCCCCc
Q 025492 66 KIQFADIG--CGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQN-ISVVRTNSMKYIPNYFEKGQ 142 (252)
Q Consensus 66 ~~~vLDIG--cG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~~~~da~~~l~~~~~~~s 142 (252)
...||=.| -|.|.+++.||+..-. .++++--+.+-.+.+.+ .+.+. +.+...|..+.+........
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~----------lGAd~vi~y~~~~~~~~v~~~t~g~g 211 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKE----------LGADHVINYREEDFVEQVRELTGGKG 211 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHh----------cCCCEEEcCCcccHHHHHHHHcCCCC
Confidence 55778777 4558899999999744 66777777654443322 13332 22333444433333222335
Q ss_pred ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025492 143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD 188 (252)
Q Consensus 143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td 188 (252)
+|.|+-. +....+......|+++|+++..-.
T Consensus 212 vDvv~D~---------------vG~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 212 VDVVLDT---------------VGGDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred ceEEEEC---------------CCHHHHHHHHHHhccCCEEEEEec
Confidence 8888732 233578889999999999988654
No 411
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=66.43 E-value=16 Score=32.85 Aligned_cols=42 Identities=21% Similarity=0.146 Sum_probs=31.7
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHH
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKE 107 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~ 107 (252)
...+.=+|+|. |...+.-|+.....++||||++++-.+.|++
T Consensus 193 GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 193 GSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred CCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence 45788888887 5455556666667799999999998877754
No 412
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=66.20 E-value=78 Score=27.40 Aligned_cols=89 Identities=12% Similarity=0.046 Sum_probs=51.3
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
...||=.|+|. |..++.+|+.. +..+++++.+++..+.+++ + +...+... ... .....+|
T Consensus 156 g~~vlV~g~g~vg~~~~q~a~~~-G~~vi~~~~~~~~~~~~~~-~---------g~~~~~~~----~~~----~~~~~~d 216 (319)
T cd08242 156 GDKVAVLGDGKLGLLIAQVLALT-GPDVVLVGRHSEKLALARR-L---------GVETVLPD----EAE----SEGGGFD 216 (319)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH-c---------CCcEEeCc----ccc----ccCCCCC
Confidence 34555567654 55556666665 5668999988877665543 1 33211111 100 1234577
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
.++-.... ...+..+.+.|+++|++++..
T Consensus 217 ~vid~~g~--------------~~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 217 VVVEATGS--------------PSGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred EEEECCCC--------------hHHHHHHHHHhhcCCEEEEEc
Confidence 77643211 136778888999999998643
No 413
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=66.13 E-value=46 Score=30.21 Aligned_cols=93 Identities=15% Similarity=0.170 Sum_probs=50.7
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhH-HHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKV-TEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL 143 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~-i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~ 143 (252)
...||=.|||. |..++.+|+.. +..+++++.+.+. .+.++ . .+.+.+ +...+.. .+.... +.+
T Consensus 179 g~~VlV~G~G~vG~~avq~Ak~~-Ga~Vi~~~~~~~~~~~~a~----~------lGa~~~-i~~~~~~-~v~~~~--~~~ 243 (375)
T PLN02178 179 GKRLGVNGLGGLGHIAVKIGKAF-GLRVTVISRSSEKEREAID----R------LGADSF-LVTTDSQ-KMKEAV--GTM 243 (375)
T ss_pred CCEEEEEcccHHHHHHHHHHHHc-CCeEEEEeCChHHhHHHHH----h------CCCcEE-EcCcCHH-HHHHhh--CCC
Confidence 45666678875 66777888876 4578999887543 22221 1 133221 1011111 121111 136
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
|.++-.-.. ...+....+.|++||+++...
T Consensus 244 D~vid~~G~--------------~~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 244 DFIIDTVSA--------------EHALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred cEEEECCCc--------------HHHHHHHHHhhcCCCEEEEEc
Confidence 666533211 136677888999999988653
No 414
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=65.88 E-value=59 Score=29.02 Aligned_cols=94 Identities=14% Similarity=0.152 Sum_probs=53.5
Q ss_pred ceEEEEcCc-ccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC---CcccccCccCCCCc
Q 025492 67 IQFADIGCG-FGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT---NSMKYIPNYFEKGQ 142 (252)
Q Consensus 67 ~~vLDIGcG-~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~---da~~~l~~~~~~~s 142 (252)
..||-.|+| .|..++.+|+......+++++.++...+.+. .. +.. .++.. +....+....+...
T Consensus 184 ~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~----~~------g~~--~vv~~~~~~~~~~l~~~~~~~~ 251 (363)
T cd08279 184 DTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELAR----RF------GAT--HTVNASEDDAVEAVRDLTDGRG 251 (363)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH----Hh------CCe--EEeCCCCccHHHHHHHHcCCCC
Confidence 455556886 4777888888864334899988877654432 11 332 22221 11111211222345
Q ss_pred ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
+|.++-.... ...+..+.+.|+++|+++..
T Consensus 252 vd~vld~~~~--------------~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 252 ADYAFEAVGR--------------AATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred CCEEEEcCCC--------------hHHHHHHHHHhhcCCeEEEE
Confidence 7766532211 14778889999999998765
No 415
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=65.81 E-value=46 Score=29.22 Aligned_cols=104 Identities=13% Similarity=0.034 Sum_probs=54.0
Q ss_pred eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhh-cCCCC-----cccEEEEeCCcccccCccCCCC
Q 025492 68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRV-SNPGQ-----YQNISVVRTNSMKYIPNYFEKG 141 (252)
Q Consensus 68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~-~~~~~-----~~nv~~~~~da~~~l~~~~~~~ 141 (252)
.|.=||+|.=...+..+-...+..++++|.+++.++.+.+.+..... ....+ ..++.+ ..|..+.+ .
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~------~ 78 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAAV------S 78 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHHh------c
Confidence 46668888633333333233467899999999888777654321100 00000 112222 12221111 2
Q ss_pred cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
..|.|++..|+.... ...++.++...++++-.|...|
T Consensus 79 ~aDlVi~av~~~~~~---------~~~v~~~l~~~~~~~~ii~s~t 115 (311)
T PRK06130 79 GADLVIEAVPEKLEL---------KRDVFARLDGLCDPDTIFATNT 115 (311)
T ss_pred cCCEEEEeccCcHHH---------HHHHHHHHHHhCCCCcEEEECC
Confidence 468888887765310 1247778887776655444333
No 416
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=65.28 E-value=48 Score=28.69 Aligned_cols=103 Identities=11% Similarity=0.013 Sum_probs=57.6
Q ss_pred eEEEEcCcc--cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHH-hhcCCCC-c---------ccEEEEeCCccccc
Q 025492 68 QFADIGCGF--GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILAL-RVSNPGQ-Y---------QNISVVRTNSMKYI 134 (252)
Q Consensus 68 ~vLDIGcG~--G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~-~~~~~~~-~---------~nv~~~~~da~~~l 134 (252)
.|-=||+|. +.++..++.. +..++++|++++.++.+.+.+... ......+ + .++.+ ..|.. .
T Consensus 5 kI~VIG~G~mG~~ia~~la~~--g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~-~- 79 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA--GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLD-D- 79 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHH-H-
Confidence 356678875 3334444444 568999999999887665443221 1111111 1 13332 22321 1
Q ss_pred CccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025492 135 PNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV 189 (252)
Q Consensus 135 ~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~ 189 (252)
-...|.|+..-|..... ...+++++.+.++++..|...|..
T Consensus 80 -----~~~aDlVi~av~e~~~~---------k~~~~~~l~~~~~~~~il~s~ts~ 120 (282)
T PRK05808 80 -----LKDADLVIEAATENMDL---------KKKIFAQLDEIAKPEAILATNTSS 120 (282)
T ss_pred -----hccCCeeeecccccHHH---------HHHHHHHHHhhCCCCcEEEECCCC
Confidence 13468888876543321 126899999999998877444433
No 417
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=65.27 E-value=4.1 Score=30.58 Aligned_cols=20 Identities=20% Similarity=0.306 Sum_probs=17.7
Q ss_pred HHHHHHHHhhcCCcEEEEEe
Q 025492 168 HLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 168 ~~l~~~~~~LkpgG~l~~~t 187 (252)
.+++.++..|+|||.|++.-
T Consensus 25 ~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 25 RFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp HHHHHHHHHEEEEEEEEEE-
T ss_pred HHHHHHHHhhCCCCEEEEeC
Confidence 49999999999999999964
No 418
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=65.09 E-value=40 Score=29.19 Aligned_cols=83 Identities=18% Similarity=0.234 Sum_probs=45.7
Q ss_pred EEEEcCcc--cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025492 69 FADIGCGF--GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM 146 (252)
Q Consensus 69 vLDIGcG~--G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i 146 (252)
|.=||+|. |.++..+++. +..++++|.++..++.+... +. +.....+. .. -...|.|
T Consensus 3 I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~----------g~--~~~~~~~~-----~~--~~~aDlV 61 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIER----------GL--VDEASTDL-----SL--LKDCDLV 61 (279)
T ss_pred EEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHC----------CC--cccccCCH-----hH--hcCCCEE
Confidence 44577775 3333444433 56899999998776554321 11 11111111 11 1346888
Q ss_pred EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEE
Q 025492 147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGII 183 (252)
Q Consensus 147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l 183 (252)
++..|.... ..+++++...++++-.+
T Consensus 62 ilavp~~~~-----------~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 62 ILALPIGLL-----------LPPSEQLIPALPPEAIV 87 (279)
T ss_pred EEcCCHHHH-----------HHHHHHHHHhCCCCcEE
Confidence 888775432 24677888878776444
No 419
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=64.82 E-value=1e+02 Score=27.26 Aligned_cols=118 Identities=12% Similarity=0.073 Sum_probs=60.6
Q ss_pred EcCcc-cHHHHHHHHHCCC-CeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEEEe
Q 025492 72 IGCGF-GGLLISLSTLFPE-VLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMFFL 149 (252)
Q Consensus 72 IGcG~-G~~~~~lA~~~p~-~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~~~ 149 (252)
||+|. |..+..+....+- ..+.-+|+..+... .....+.........++.+..+|.. .+. ..|.|++.
T Consensus 2 IGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~---g~a~Dl~~~~~~~~~~~~i~~~~~~-~~~------daDivVit 71 (299)
T TIGR01771 2 IGAGNVGSSTAFALLNQGIADEIVLIDINKDKAE---GEAMDLQHAASFLPTPKKIRSGDYS-DCK------DADLVVIT 71 (299)
T ss_pred CCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhh---HHHHHHHHhhcccCCCeEEecCCHH-HHC------CCCEEEEC
Confidence 68877 5555554444332 36889999876432 2222322211112234555544432 222 34777776
Q ss_pred CCCCccccccccccc---cCHHHHHHHHHhh---cCCcEEEEEeCchHHHHHHHHHHh
Q 025492 150 FPDPHFKEKNHRRRV---ISPHLLDEYAYVL---GVGGIIYTITDVEELGDWMRSCLE 201 (252)
Q Consensus 150 fpdP~~k~~h~krr~---~~~~~l~~~~~~L---kpgG~l~~~td~~~~~~~~~~~~~ 201 (252)
.-.|. | ....|.- .+..+++++...+ .|.|.+++.|+..+...+......
T Consensus 72 ag~~r-k-~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~~~s 127 (299)
T TIGR01771 72 AGAPQ-K-PGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDILTYVAWKLS 127 (299)
T ss_pred CCCCC-C-CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHh
Confidence 55443 1 1111111 1233444444444 589999999987776666655543
No 420
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=64.63 E-value=2.4 Score=30.87 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=13.8
Q ss_pred EEEEcCcccHHHHHHHHH
Q 025492 69 FADIGCGFGGLLISLSTL 86 (252)
Q Consensus 69 vLDIGcG~G~~~~~lA~~ 86 (252)
-+|||||.|...-+.-+.
T Consensus 6 NIDIGcG~GNTmda~fRs 23 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAAFRS 23 (124)
T ss_pred ccccccCCCcchhhhhhc
Confidence 589999999876655554
No 421
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=64.17 E-value=52 Score=30.67 Aligned_cols=86 Identities=12% Similarity=-0.019 Sum_probs=53.1
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
+..|+=+|||. |...+.+++.. +.+++.+|+++.....|.. .+.. .+ +..+.+ ...|
T Consensus 202 GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~----------~G~~---~~--~~~e~v------~~aD 259 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAM----------EGYE---VM--TMEEAV------KEGD 259 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHh----------cCCE---Ec--cHHHHH------cCCC
Confidence 56899999998 65666666665 5689999999876555432 1321 11 111222 1357
Q ss_pred EEEEeCCCCccccccccccccCHHHHHH-HHHhhcCCcEEEEEe
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDE-YAYVLGVGGIIYTIT 187 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~-~~~~LkpgG~l~~~t 187 (252)
.|+..-.. +..+.. ....+++||+++...
T Consensus 260 VVI~atG~--------------~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 260 IFVTTTGN--------------KDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred EEEECCCC--------------HHHHHHHHHhcCCCCcEEEEeC
Confidence 66643211 135554 488999999997765
No 422
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=64.13 E-value=41 Score=31.38 Aligned_cols=106 Identities=16% Similarity=0.175 Sum_probs=53.8
Q ss_pred eEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc------cEEEEeCCcccccCccCCC
Q 025492 68 QFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ------NISVVRTNSMKYIPNYFEK 140 (252)
Q Consensus 68 ~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~------nv~~~~~da~~~l~~~~~~ 140 (252)
.|-=||.|. .+..+|... .+..++|+|+++..++..++... ...+.+++ ++.+ ..+.. . -
T Consensus 8 kI~vIGlGy--vGlpmA~~la~~~~V~g~D~~~~~ve~l~~G~~---~~~e~~~~~l~~~g~l~~-t~~~~-~------~ 74 (425)
T PRK15182 8 KIAIIGLGY--VGLPLAVEFGKSRQVVGFDVNKKRILELKNGVD---VNLETTEEELREARYLKF-TSEIE-K------I 74 (425)
T ss_pred eEEEECcCc--chHHHHHHHhcCCEEEEEeCCHHHHHHHHCcCC---CCCCCCHHHHHhhCCeeE-EeCHH-H------H
Confidence 455566665 444444432 24789999999987765431100 00000111 1111 11111 1 1
Q ss_pred CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
...|.+++..|+|.....+..-.-+ ....+.+...|++|..+++.|
T Consensus 75 ~~advvii~Vptp~~~~~~~dl~~v-~~a~~~i~~~l~~g~lVI~~S 120 (425)
T PRK15182 75 KECNFYIITVPTPINTYKQPDLTPL-IKASETVGTVLNRGDIVVYES 120 (425)
T ss_pred cCCCEEEEEcCCCCCCCCCcchHHH-HHHHHHHHHhcCCCCEEEEec
Confidence 3568999999998633222111111 112457778888888777754
No 423
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=63.99 E-value=53 Score=28.52 Aligned_cols=103 Identities=11% Similarity=0.110 Sum_probs=56.0
Q ss_pred eEEEEcCcc--cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhh--cCCCC---------cccEEEEeCCccccc
Q 025492 68 QFADIGCGF--GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRV--SNPGQ---------YQNISVVRTNSMKYI 134 (252)
Q Consensus 68 ~vLDIGcG~--G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~--~~~~~---------~~nv~~~~~da~~~l 134 (252)
.|.=||+|. +.++..++.. +..|+.+|++++.++.+.+.+..... ..... ..++.+. .|..+.+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~~ 79 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVS--GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLKAAV 79 (288)
T ss_pred EEEEECccHHHHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHHHhh
Confidence 366678864 2222333333 66899999999988877654332100 00000 1123322 2222111
Q ss_pred CccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025492 135 PNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD 188 (252)
Q Consensus 135 ~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td 188 (252)
...|.|+...|++..- ...++.++.+.++++..|...|-
T Consensus 80 ------~~aD~Vi~avpe~~~~---------k~~~~~~l~~~~~~~~il~~~tS 118 (288)
T PRK09260 80 ------ADADLVIEAVPEKLEL---------KKAVFETADAHAPAECYIATNTS 118 (288)
T ss_pred ------cCCCEEEEeccCCHHH---------HHHHHHHHHhhCCCCcEEEEcCC
Confidence 2468888877765321 12577888888888876655443
No 424
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=63.99 E-value=73 Score=27.58 Aligned_cols=94 Identities=12% Similarity=0.077 Sum_probs=54.6
Q ss_pred CceEEEEc--CcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEe-CCcccccCccCCCCc
Q 025492 66 KIQFADIG--CGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVR-TNSMKYIPNYFEKGQ 142 (252)
Q Consensus 66 ~~~vLDIG--cG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~-~da~~~l~~~~~~~s 142 (252)
...||=.| -|.|..++.+|+.. +..+++++.+++..+.+++ + +...+--.. .|..+.+.... ...
T Consensus 144 g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~----~------Ga~~vi~~~~~~~~~~v~~~~-~~g 211 (329)
T cd08294 144 GETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKE----L------GFDAVFNYKTVSLEEALKEAA-PDG 211 (329)
T ss_pred CCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----c------CCCEEEeCCCccHHHHHHHHC-CCC
Confidence 34666666 45688888899886 5689999988876555432 1 333221111 12111121111 234
Q ss_pred ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
+|.|+-.. ....+....+.|+++|+++..
T Consensus 212 vd~vld~~---------------g~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 212 IDCYFDNV---------------GGEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred cEEEEECC---------------CHHHHHHHHHhhccCCEEEEE
Confidence 67665322 124678889999999998764
No 425
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=63.75 E-value=11 Score=34.33 Aligned_cols=116 Identities=9% Similarity=0.066 Sum_probs=67.3
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
...+||.||+.+.....+++.++-...-|+++..+.+..+...-.. ....--+..+..+|+.. .. .+....++.
T Consensus 181 ~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~----~~~~~i~~~i~~gd~~~-~~-~~~~d~~~~ 254 (364)
T KOG1269|consen 181 GVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPN----SEHVDILLEIEGGDALP-AE-TFNTDVFDL 254 (364)
T ss_pred cEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCC----cccccccCceecccccc-ce-eccccHHHH
Confidence 4589999999999999999999888888999998877554322110 01112245666666542 11 111111111
Q ss_pred E--------E------EeCCCCcccccc---ccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 146 M--------F------FLFPDPHFKEKN---HRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 146 i--------~------~~fpdP~~k~~h---~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
+ . ...+-||..... .-.--..+.++......++|+|.+++..
T Consensus 255 ~~~~~~~~~~~~~dl~~~~s~~w~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~e 313 (364)
T KOG1269|consen 255 LKSFGFEHLKLEKDLALKSSFPWNTPLTRDTITHWQDKSALFRGRVATLKPGGKVLILE 313 (364)
T ss_pred HhhccchhhhhcccccCCCccccccccchhheeecccccHHHHhHhhccCcCceEEehh
Confidence 1 1 111224543221 0000112457788889999999998853
No 426
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=63.64 E-value=76 Score=29.17 Aligned_cols=108 Identities=13% Similarity=0.099 Sum_probs=63.6
Q ss_pred eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc--cEEEEeCCcccccCccCCCCcccE
Q 025492 68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ--NISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~--nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
.||=|+=.-|.++..++...|. .+ .|-.- .-.....|+.. ++++ ++.++.... . + ++.+|.
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~--~~-~ds~~-~~~~~~~n~~~------n~~~~~~~~~~~~~~--~----~-~~~~d~ 109 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPY--SI-GDSYI-SELATRENLRL------NGIDESSVKFLDSTA--D----Y-PQQPGV 109 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCC--ee-ehHHH-HHHHHHHHHHH------cCCCcccceeecccc--c----c-cCCCCE
Confidence 6889999999999999976552 11 23211 11122233322 3443 455553332 1 2 345899
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHh
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLE 201 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~ 201 (252)
|.+..| |... .-...+..+...|.||+.++.....+.....|.+.++
T Consensus 110 vl~~~P----K~~~-----~l~~~l~~l~~~l~~~~~ii~g~~~k~i~~~~~~~~~ 156 (378)
T PRK15001 110 VLIKVP----KTLA-----LLEQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFE 156 (378)
T ss_pred EEEEeC----CCHH-----HHHHHHHHHHhhCCCCCEEEEEEecCCCcHHHHHHHH
Confidence 988754 3321 1234788888999999999877776665444454444
No 427
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=63.11 E-value=67 Score=28.73 Aligned_cols=95 Identities=14% Similarity=0.099 Sum_probs=52.0
Q ss_pred ceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccE-EEEeC--CcccccCccCCCCc
Q 025492 67 IQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNI-SVVRT--NSMKYIPNYFEKGQ 142 (252)
Q Consensus 67 ~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv-~~~~~--da~~~l~~~~~~~s 142 (252)
..||=+|+|. |..++.+|+......+++++.++...+.+.+ + +...+ ..... +..+.+.... .+.
T Consensus 185 ~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~-~---------g~~~~v~~~~~~~~~~~~l~~~~-~~~ 253 (365)
T cd05279 185 STCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ-L---------GATECINPRDQDKPIVEVLTEMT-DGG 253 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-h---------CCCeecccccccchHHHHHHHHh-CCC
Confidence 3555568764 5566667777644458899988876655532 1 22211 11111 1111121222 235
Q ss_pred ccEEEEeCCCCccccccccccccCHHHHHHHHHhhc-CCcEEEEE
Q 025492 143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLG-VGGIIYTI 186 (252)
Q Consensus 143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~Lk-pgG~l~~~ 186 (252)
+|.++-.... ...+....+.|+ ++|+++..
T Consensus 254 ~d~vid~~g~--------------~~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 254 VDYAFEVIGS--------------ADTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred CcEEEECCCC--------------HHHHHHHHHHhccCCCEEEEE
Confidence 7766633211 147778888999 99999875
No 428
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=63.03 E-value=92 Score=27.80 Aligned_cols=93 Identities=16% Similarity=0.198 Sum_probs=49.8
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
...||=+|+|. |..++.+|+.. +..+++++.+++....+.+.+ +.+.+ +...+.. .+.... ..+|
T Consensus 181 g~~vlV~G~G~vG~~av~~Ak~~-G~~vi~~~~~~~~~~~~~~~~---------Ga~~~-i~~~~~~-~~~~~~--~~~D 246 (357)
T PLN02514 181 GLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSDKKREEALEHL---------GADDY-LVSSDAA-EMQEAA--DSLD 246 (357)
T ss_pred CCeEEEEcccHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHhc---------CCcEE-ecCCChH-HHHHhc--CCCc
Confidence 34566568765 66677788876 457888888776443332211 33211 1111111 111111 1366
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
.++-.-.. ...+..+.+.|++||+++..
T Consensus 247 ~vid~~g~--------------~~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 247 YIIDTVPV--------------FHPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred EEEECCCc--------------hHHHHHHHHHhccCCEEEEE
Confidence 66533221 13677788899999988775
No 429
>PRK07102 short chain dehydrogenase; Provisional
Probab=62.61 E-value=51 Score=27.33 Aligned_cols=58 Identities=9% Similarity=0.038 Sum_probs=36.8
Q ss_pred eEEEEcCcccHHHHHHHHHC--CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCccc
Q 025492 68 QFADIGCGFGGLLISLSTLF--PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMK 132 (252)
Q Consensus 68 ~vLDIGcG~G~~~~~lA~~~--p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~ 132 (252)
.+|=.|+. |.++..+++.. .+..+++++.++...+.....+.. ....++.++.+|+.+
T Consensus 3 ~vlItGas-~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~------~~~~~~~~~~~Dl~~ 62 (243)
T PRK07102 3 KILIIGAT-SDIARACARRYAAAGARLYLAARDVERLERLADDLRA------RGAVAVSTHELDILD 62 (243)
T ss_pred EEEEEcCC-cHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHH------hcCCeEEEEecCCCC
Confidence 57778854 56666666552 367899999988655433332221 133579999999763
No 430
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=62.36 E-value=26 Score=31.25 Aligned_cols=77 Identities=12% Similarity=0.186 Sum_probs=55.1
Q ss_pred EEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHHH
Q 025492 94 GMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEY 173 (252)
Q Consensus 94 GiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~ 173 (252)
-+++.+...+.++. .+..|.++++|..+.+. .-+.+.+|.+++.=...|...... ..++.++
T Consensus 291 P~yl~~~~YEsir~-----------n~~RV~ihha~~iE~l~-~k~ag~Vdr~iLlDaqdwmtd~ql------n~lws~i 352 (414)
T COG5379 291 PAYLDEGVYESIRQ-----------NLRRVAIHHADIIELLA-GKPAGNVDRYILLDAQDWMTDGQL------NSLWSEI 352 (414)
T ss_pred ChhhchhhHHHHHh-----------hhhheeeecccHHHHhc-cCCCCCcceEEEecchhhcccchH------HHHHHHH
Confidence 44555555555443 34569999999988664 235789999988655556544332 3689999
Q ss_pred HHhhcCCcEEEEEeC
Q 025492 174 AYVLGVGGIIYTITD 188 (252)
Q Consensus 174 ~~~LkpgG~l~~~td 188 (252)
.+-+.+|..++|.|-
T Consensus 353 srta~~gA~VifRta 367 (414)
T COG5379 353 SRTAEAGARVIFRTA 367 (414)
T ss_pred hhccCCCcEEEEecc
Confidence 999999999999884
No 431
>PRK10537 voltage-gated potassium channel; Provisional
Probab=62.26 E-value=42 Score=30.99 Aligned_cols=100 Identities=9% Similarity=-0.018 Sum_probs=59.3
Q ss_pred eEEEEcCcccHHHHHHHHH--CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCC---CCc
Q 025492 68 QFADIGCGFGGLLISLSTL--FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFE---KGQ 142 (252)
Q Consensus 68 ~vLDIGcG~G~~~~~lA~~--~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~---~~s 142 (252)
.++= ||.|..+..+++. ..+..++.||.+.. + + . ...++.++.+|+.+. +.+. -+.
T Consensus 242 HvII--~G~g~lg~~v~~~L~~~g~~vvVId~d~~--~---~----~------~~~g~~vI~GD~td~--e~L~~AgI~~ 302 (393)
T PRK10537 242 HFII--CGHSPLAINTYLGLRQRGQAVTVIVPLGL--E---H----R------LPDDADLIPGDSSDS--AVLKKAGAAR 302 (393)
T ss_pred eEEE--ECCChHHHHHHHHHHHCCCCEEEEECchh--h---h----h------ccCCCcEEEeCCCCH--HHHHhcCccc
Confidence 4554 4555666666654 22457888886521 1 1 0 123466899998631 1221 235
Q ss_pred ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHH
Q 025492 143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMR 197 (252)
Q Consensus 143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~ 197 (252)
.+.|++..+|... ..++-...+.+.|+..++...++++..+.+.
T Consensus 303 A~aVI~~t~dD~~-----------Nl~ivL~ar~l~p~~kIIa~v~~~~~~~~L~ 346 (393)
T PRK10537 303 ARAILALRDNDAD-----------NAFVVLAAKEMSSDVKTVAAVNDSKNLEKIK 346 (393)
T ss_pred CCEEEEcCCChHH-----------HHHHHHHHHHhCCCCcEEEEECCHHHHHHHH
Confidence 5677776665432 1355667788999999999888877655443
No 432
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=62.22 E-value=20 Score=33.93 Aligned_cols=90 Identities=16% Similarity=0.188 Sum_probs=53.7
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEE------EEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCC
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMI------GMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFE 139 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~i------GiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~ 139 (252)
+..|+=||||+=..+.++--+..+.+++ +||.+....+.|.+ .+. . ..+..+.++
T Consensus 36 gKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~----------dGF---~--v~~~~Ea~~---- 96 (487)
T PRK05225 36 GKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATE----------NGF---K--VGTYEELIP---- 96 (487)
T ss_pred CCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHh----------cCC---c--cCCHHHHHH----
Confidence 4579999999844433332233345555 44544444333221 132 1 233333332
Q ss_pred CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 140 KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 140 ~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
..|.|++..||-- | ..+.+++...||||..|.|+.
T Consensus 97 --~ADvVviLlPDt~----q-------~~v~~~i~p~LK~Ga~L~fsH 131 (487)
T PRK05225 97 --QADLVINLTPDKQ----H-------SDVVRAVQPLMKQGAALGYSH 131 (487)
T ss_pred --hCCEEEEcCChHH----H-------HHHHHHHHhhCCCCCEEEecC
Confidence 5689999999862 1 246799999999999999965
No 433
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=61.78 E-value=70 Score=28.52 Aligned_cols=95 Identities=21% Similarity=0.246 Sum_probs=53.3
Q ss_pred ceEEEEcCc-ccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC---CcccccCccCCCCc
Q 025492 67 IQFADIGCG-FGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT---NSMKYIPNYFEKGQ 142 (252)
Q Consensus 67 ~~vLDIGcG-~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~---da~~~l~~~~~~~s 142 (252)
..||=.|+| .|..++.+|+......+++++-++...+.+.+ . +... ++.. +....+........
T Consensus 189 ~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~----~------g~~~--v~~~~~~~~~~~l~~~~~~~~ 256 (367)
T cd08263 189 ETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKE----L------GATH--TVNAAKEDAVAAIREITGGRG 256 (367)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----h------CCce--EecCCcccHHHHHHHHhCCCC
Confidence 344445775 47777788887643348999888776554421 1 2221 2211 11111111122345
Q ss_pred ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
+|.|+-....+ ..+..+.+.|+++|+++...
T Consensus 257 ~d~vld~vg~~--------------~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 257 VDVVVEALGKP--------------ETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred CCEEEEeCCCH--------------HHHHHHHHHHhcCCEEEEEc
Confidence 78776443221 26778889999999988653
No 434
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=61.66 E-value=74 Score=27.72 Aligned_cols=93 Identities=13% Similarity=0.185 Sum_probs=49.8
Q ss_pred eEEE-EcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEE-eCCcccccCccCCCCccc
Q 025492 68 QFAD-IGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVV-RTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 68 ~vLD-IGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~-~~da~~~l~~~~~~~s~d 144 (252)
.+|- -|+|. |..++.+|+.. +..+++++.++...+.+++ + +.+.+--. ..+..+.+........+|
T Consensus 146 vlv~~~g~g~vG~~a~q~a~~~-G~~vi~~~~~~~~~~~~~~----~------g~~~~i~~~~~~~~~~v~~~~~~~~~d 214 (324)
T cd08291 146 AVVHTAAASALGRMLVRLCKAD-GIKVINIVRRKEQVDLLKK----I------GAEYVLNSSDPDFLEDLKELIAKLNAT 214 (324)
T ss_pred EEEEccCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----c------CCcEEEECCCccHHHHHHHHhCCCCCc
Confidence 4443 35543 77777788775 6689999998876555432 1 33221111 112211122222223467
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
.++-.... ..+....+.|+++|++++.
T Consensus 215 ~vid~~g~---------------~~~~~~~~~l~~~G~~v~~ 241 (324)
T cd08291 215 IFFDAVGG---------------GLTGQILLAMPYGSTLYVY 241 (324)
T ss_pred EEEECCCc---------------HHHHHHHHhhCCCCEEEEE
Confidence 66532211 2445567788999998775
No 435
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=61.62 E-value=66 Score=28.42 Aligned_cols=92 Identities=13% Similarity=0.096 Sum_probs=50.6
Q ss_pred eEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC---CcccccCccCCCCcc
Q 025492 68 QFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT---NSMKYIPNYFEKGQL 143 (252)
Q Consensus 68 ~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~---da~~~l~~~~~~~s~ 143 (252)
+++ .|+|. |..++.+|+......+++++.++.....+.+ . +... ++.. +..+.+........+
T Consensus 178 vlI-~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~------g~~~--v~~~~~~~~~~~~~~~~~~~~v 244 (350)
T cd08256 178 VVL-AGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARK----F------GADV--VLNPPEVDVVEKIKELTGGYGC 244 (350)
T ss_pred EEE-ECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHH----c------CCcE--EecCCCcCHHHHHHHHhCCCCC
Confidence 444 77754 6666778887644468899988765543321 1 3321 1211 111112211222347
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
|.++-....+ ..+..+.+.|+++|+++..
T Consensus 245 dvvld~~g~~--------------~~~~~~~~~l~~~G~~v~~ 273 (350)
T cd08256 245 DIYIEATGHP--------------SAVEQGLNMIRKLGRFVEF 273 (350)
T ss_pred CEEEECCCCh--------------HHHHHHHHHhhcCCEEEEE
Confidence 7665433211 3677888999999998764
No 436
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=61.57 E-value=9.5 Score=30.95 Aligned_cols=60 Identities=15% Similarity=0.134 Sum_probs=35.6
Q ss_pred eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcc
Q 025492 68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSM 131 (252)
Q Consensus 68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~ 131 (252)
.|+.+|||-=.....+....++..++-+|. +++++.-++.+..... ....|++++.+|+.
T Consensus 81 qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~---~~~~~~~~v~~Dl~ 140 (183)
T PF04072_consen 81 QVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGA---RPPANYRYVPADLR 140 (183)
T ss_dssp EEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHH---HHHEESSEEES-TT
T ss_pred EEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcc---cCCcceeEEecccc
Confidence 899999999999999988877888888886 3444444444433200 01134567777765
No 437
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=61.18 E-value=81 Score=27.60 Aligned_cols=97 Identities=15% Similarity=0.148 Sum_probs=50.1
Q ss_pred ceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 67 IQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 67 ~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
..||=.|+|. |..++.+|+...-..+++++.++.....+.+ . +..-+.....+....+....+...+|.
T Consensus 169 ~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~------g~~~~~~~~~~~~~~l~~~~~~~~~dv 238 (344)
T cd08284 169 DTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAA----L------GAEPINFEDAEPVERVREATEGRGADV 238 (344)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----h------CCeEEecCCcCHHHHHHHHhCCCCCCE
Confidence 3444457653 5556667777532378898877655433321 1 221111111111111222222345776
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
++-.... ...+....+.|+++|+++...
T Consensus 239 vid~~~~--------------~~~~~~~~~~l~~~g~~v~~g 266 (344)
T cd08284 239 VLEAVGG--------------AAALDLAFDLVRPGGVISSVG 266 (344)
T ss_pred EEECCCC--------------HHHHHHHHHhcccCCEEEEEC
Confidence 6543221 147888889999999988653
No 438
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=60.76 E-value=83 Score=26.72 Aligned_cols=96 Identities=10% Similarity=0.116 Sum_probs=53.0
Q ss_pred CceEEEEcC--cccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEE-EEeCCcccccCccCCCCc
Q 025492 66 KIQFADIGC--GFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNIS-VVRTNSMKYIPNYFEKGQ 142 (252)
Q Consensus 66 ~~~vLDIGc--G~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~-~~~~da~~~l~~~~~~~s 142 (252)
+..||-.|| +.|..++.+|+.. ++.+++++.+....+.+.+ . +...+- ....+..+.+........
T Consensus 140 ~~~vli~g~~~~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~----~------g~~~~~~~~~~~~~~~i~~~~~~~~ 208 (323)
T cd08241 140 GETVLVLGAAGGVGLAAVQLAKAL-GARVIAAASSEEKLALARA----L------GADHVIDYRDPDLRERVKALTGGRG 208 (323)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHh-CCEEEEEeCCHHHHHHHHH----c------CCceeeecCCccHHHHHHHHcCCCC
Confidence 457888898 3566667777765 5678999988876555422 1 222111 111122111222222335
Q ss_pred ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
+|.++-+.. ...+..+.+.|+++|.++...
T Consensus 209 ~d~v~~~~g---------------~~~~~~~~~~~~~~g~~v~~~ 238 (323)
T cd08241 209 VDVVYDPVG---------------GDVFEASLRSLAWGGRLLVIG 238 (323)
T ss_pred cEEEEECcc---------------HHHHHHHHHhhccCCEEEEEc
Confidence 776653321 135666778889999887643
No 439
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=60.75 E-value=1e+02 Score=26.22 Aligned_cols=93 Identities=15% Similarity=0.137 Sum_probs=54.3
Q ss_pred CceEEEEcC--cccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025492 66 KIQFADIGC--GFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL 143 (252)
Q Consensus 66 ~~~vLDIGc--G~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~ 143 (252)
...||=.|+ +.|..++.+|+.. +..++++..+++..+.+.+ . +.+.+-....+..+.+... ...+
T Consensus 143 g~~vlV~ga~g~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~----~------g~~~~~~~~~~~~~~i~~~--~~~~ 209 (320)
T cd08243 143 GDTLLIRGGTSSVGLAALKLAKAL-GATVTATTRSPERAALLKE----L------GADEVVIDDGAIAEQLRAA--PGGF 209 (320)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----c------CCcEEEecCccHHHHHHHh--CCCc
Confidence 346666775 5688888888886 5778999888765544421 1 3332211111221112222 3457
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
|.++-... ...+..+.+.|+++|+++..
T Consensus 210 d~vl~~~~---------------~~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 210 DKVLELVG---------------TATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred eEEEECCC---------------hHHHHHHHHHhccCCEEEEE
Confidence 77664321 13677888999999998765
No 440
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=60.68 E-value=88 Score=28.10 Aligned_cols=106 Identities=12% Similarity=0.031 Sum_probs=52.6
Q ss_pred ceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 67 IQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 67 ~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
..||=.|||. |..++.+|+......++++|.++...+.+.+ . +..-+.....+..+.+.... ...+|.
T Consensus 178 ~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~----~------g~~~v~~~~~~~~~~i~~~~-~~~~d~ 246 (375)
T cd08282 178 DTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAES----I------GAIPIDFSDGDPVEQILGLE-PGGVDR 246 (375)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----c------CCeEeccCcccHHHHHHHhh-CCCCCE
Confidence 3444478874 7777788877643478889988766554432 1 22111111111111121111 234676
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
++-....+-. ++ --..-....+..+.+.|+++|++...
T Consensus 247 v~d~~g~~~~--~~-~~~~~~~~~~~~~~~~l~~~g~~~~~ 284 (375)
T cd08282 247 AVDCVGYEAR--DR-GGEAQPNLVLNQLIRVTRPGGGIGIV 284 (375)
T ss_pred EEECCCCccc--cc-ccccchHHHHHHHHHHhhcCcEEEEE
Confidence 6543221100 00 00001123588889999999998653
No 441
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=60.05 E-value=1.1e+02 Score=26.42 Aligned_cols=34 Identities=12% Similarity=0.092 Sum_probs=17.9
Q ss_pred eEEEEcCcccHHHHHHHH---HC-CCCe-EEEEecCHhHHH
Q 025492 68 QFADIGCGFGGLLISLST---LF-PEVL-MIGMELRDKVTE 103 (252)
Q Consensus 68 ~vLDIGcG~G~~~~~lA~---~~-p~~~-~iGiDis~~~i~ 103 (252)
.|.=||||. ++..+++ .. ++.. +..+|.+++..+
T Consensus 3 rIgIIG~G~--iG~~ia~~l~~~~~~~elv~v~d~~~~~a~ 41 (265)
T PRK13304 3 KIGIVGCGA--IASLITKAILSGRINAELYAFYDRNLEKAE 41 (265)
T ss_pred EEEEECccH--HHHHHHHHHHcCCCCeEEEEEECCCHHHHH
Confidence 366689975 3333333 22 2444 345788876443
No 442
>PLN02494 adenosylhomocysteinase
Probab=59.82 E-value=62 Score=30.75 Aligned_cols=88 Identities=11% Similarity=0.003 Sum_probs=52.2
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
+..|+=+|+|. |......++.+ +.+|+++|+++.....|.. .+.. ++ +..+.+. ..|
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~-Ga~VIV~e~dp~r~~eA~~----------~G~~---vv--~leEal~------~AD 311 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAA-GARVIVTEIDPICALQALM----------EGYQ---VL--TLEDVVS------EAD 311 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCchhhHHHHh----------cCCe---ec--cHHHHHh------hCC
Confidence 56899999997 55556666555 6789999998854322211 1222 21 2222221 347
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD 188 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td 188 (252)
.|+..-.+.. .+..+....||+||.|+...-
T Consensus 312 VVI~tTGt~~-------------vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 312 IFVTTTGNKD-------------IIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred EEEECCCCcc-------------chHHHHHhcCCCCCEEEEcCC
Confidence 6665322111 134677788999999988764
No 443
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=59.04 E-value=69 Score=29.23 Aligned_cols=38 Identities=11% Similarity=0.074 Sum_probs=27.6
Q ss_pred ceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHH
Q 025492 67 IQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYV 105 (252)
Q Consensus 67 ~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a 105 (252)
..|+=||+|. |..++..+... +..++.+|.++..++.+
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l 206 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGL-GATVTILDINIDRLRQL 206 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHH
Confidence 3588889984 66677777765 45799999998765443
No 444
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=58.19 E-value=82 Score=27.74 Aligned_cols=94 Identities=17% Similarity=0.158 Sum_probs=52.9
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCC---cccccCccCCCC
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTN---SMKYIPNYFEKG 141 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~d---a~~~l~~~~~~~ 141 (252)
...||-.|+|. |..+..+|+...-..+++++.++...+.+.+ + +.. .++..+ ..+.+..... +
T Consensus 176 ~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~---------g~~--~~~~~~~~~~~~~~~~~~~-~ 242 (350)
T cd08240 176 DEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA-A---------GAD--VVVNGSDPDAAKRIIKAAG-G 242 (350)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-h---------CCc--EEecCCCccHHHHHHHHhC-C
Confidence 34666668764 6666777777643378899988776554422 1 322 122211 1111111122 2
Q ss_pred cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
.+|.++-.... ...+....+.|+++|+++..
T Consensus 243 ~~d~vid~~g~--------------~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 243 GVDAVIDFVNN--------------SATASLAFDILAKGGKLVLV 273 (350)
T ss_pred CCcEEEECCCC--------------HHHHHHHHHHhhcCCeEEEE
Confidence 46666643211 24788889999999998864
No 445
>PRK10083 putative oxidoreductase; Provisional
Probab=58.11 E-value=1.3e+02 Score=26.29 Aligned_cols=41 Identities=15% Similarity=0.047 Sum_probs=26.3
Q ss_pred CceEEEEcCcc-cHHHHHHHHH-CCCCeEEEEecCHhHHHHHH
Q 025492 66 KIQFADIGCGF-GGLLISLSTL-FPEVLMIGMELRDKVTEYVK 106 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~ 106 (252)
...||=+|+|. |..++.+|+. .....+++++.++...+.+.
T Consensus 161 g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~ 203 (339)
T PRK10083 161 QDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAK 203 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH
Confidence 44666688654 5555667774 34446889998887665543
No 446
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=58.06 E-value=7.2 Score=31.99 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhcCCcEEEEEeCchHH
Q 025492 167 PHLLDEYAYVLGVGGIIYTITDVEEL 192 (252)
Q Consensus 167 ~~~l~~~~~~LkpgG~l~~~td~~~~ 192 (252)
..++.++.++|||||.+++-.++...
T Consensus 36 ~~~~~~~~rvLk~~g~~~i~~~~~~~ 61 (231)
T PF01555_consen 36 EEWLKECYRVLKPGGSIFIFIDDREI 61 (231)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE-CCEE
T ss_pred HHHHHHHHhhcCCCeeEEEEecchhh
Confidence 46889999999999999998877553
No 447
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=57.85 E-value=97 Score=27.17 Aligned_cols=94 Identities=14% Similarity=0.107 Sum_probs=52.7
Q ss_pred ceEEEEcCc-ccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC--CcccccCccCCCCcc
Q 025492 67 IQFADIGCG-FGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT--NSMKYIPNYFEKGQL 143 (252)
Q Consensus 67 ~~vLDIGcG-~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~--da~~~l~~~~~~~s~ 143 (252)
..||=.||| .|..+..+|+.. +..+++++-+.+..+.+.+ . +...+--... +....+...... .+
T Consensus 167 ~~vlV~g~g~vg~~~~~~a~~~-G~~vi~~~~~~~~~~~~~~----~------g~~~~i~~~~~~~~~~~~~~~~~~-~~ 234 (345)
T cd08260 167 EWVAVHGCGGVGLSAVMIASAL-GARVIAVDIDDDKLELARE----L------GAVATVNASEVEDVAAAVRDLTGG-GA 234 (345)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCHHHHHHHHH----h------CCCEEEccccchhHHHHHHHHhCC-CC
Confidence 355556664 366667777776 6788999888776555421 1 3322211111 211112111222 57
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
|.++-.... ...+....+.|+++|.++..
T Consensus 235 d~vi~~~g~--------------~~~~~~~~~~l~~~g~~i~~ 263 (345)
T cd08260 235 HVSVDALGI--------------PETCRNSVASLRKRGRHVQV 263 (345)
T ss_pred CEEEEcCCC--------------HHHHHHHHHHhhcCCEEEEe
Confidence 776643211 24777888999999988764
No 448
>PF01358 PARP_regulatory: Poly A polymerase regulatory subunit; InterPro: IPR000176 This family contains viral proteins that are bifunctional, acting as both an mRNA cap-specific RNA 2'-O-methyltransferase, which methylates the ribose 2' OH group of the first transcribed nucleotide, thereby producing a 2'-o-methylpurine cap and a poly(A) polymerase processivity factor which binds to Poly(A) but has no catalytic activity. The structure of this protein is known [].; GO: 0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity, 0006370 mRNA capping, 0006397 mRNA processing; PDB: 4DCG_A 1B42_A 3ERC_A 1AV6_A 2VP3_A 1JTF_A 1JTE_A 1VP3_A 3ER9_A 1P39_A ....
Probab=57.14 E-value=10 Score=33.44 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=27.4
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCe----EEEEecCHh
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVL----MIGMELRDK 100 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~----~iGiDis~~ 100 (252)
..+||=||++.|.++..|...+++.. ++.+|..+-
T Consensus 59 ~~~VVYiGsApG~Hi~~L~~lf~~~~~~i~wvLiDp~~f 97 (294)
T PF01358_consen 59 PVTVVYIGSAPGTHIPFLFDLFPDLKVPIKWVLIDPRPF 97 (294)
T ss_dssp -EEEEEES-SS-HHHHHHHHHHHHTT--EEEEEEESS--
T ss_pred ceEEEEecCCCcchHHHHHHHHHhcCCceEEEEECCcch
Confidence 35899999999999999999988765 999998874
No 449
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=57.10 E-value=81 Score=28.26 Aligned_cols=90 Identities=19% Similarity=0.181 Sum_probs=58.8
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeE-EEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLM-IGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~-iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
...|.=||||+=.++.++--+..+.+| +|+-......+.|.+ .|.. ..+..+... .-|
T Consensus 18 gK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~----------dGf~-----V~~v~ea~k------~AD 76 (338)
T COG0059 18 GKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKE----------DGFK-----VYTVEEAAK------RAD 76 (338)
T ss_pred CCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHh----------cCCE-----eecHHHHhh------cCC
Confidence 347899999998888888777767664 555443333222221 2322 233333222 458
Q ss_pred EEEEeCCCCccccccccccccCHHHHH-HHHHhhcCCcEEEEEe
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLD-EYAYVLGVGGIIYTIT 187 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~-~~~~~LkpgG~l~~~t 187 (252)
.|++..||-. ++.+.+ ++...|+.|-.|.|..
T Consensus 77 vim~L~PDe~-----------q~~vy~~~I~p~Lk~G~aL~FaH 109 (338)
T COG0059 77 VVMILLPDEQ-----------QKEVYEKEIAPNLKEGAALGFAH 109 (338)
T ss_pred EEEEeCchhh-----------HHHHHHHHhhhhhcCCceEEecc
Confidence 9999999865 335666 9999999999999865
No 450
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=57.06 E-value=25 Score=27.12 Aligned_cols=88 Identities=15% Similarity=0.236 Sum_probs=43.7
Q ss_pred CceEEEEcCcccH-HHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCcc-CCCCcc
Q 025492 66 KIQFADIGCGFGG-LLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNY-FEKGQL 143 (252)
Q Consensus 66 ~~~vLDIGcG~G~-~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~-~~~~s~ 143 (252)
...++|||-|.=. .+..|++. +..++++|+++.. | . ..+.++.-|+.. ++. + -...
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~~---a-------------~-~g~~~v~DDif~--P~l~i-Y~~a 71 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPRK---A-------------P-EGVNFVVDDIFN--PNLEI-YEGA 71 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S---------------------STTEE---SSS----HHH-HTTE
T ss_pred CCcEEEECcCCCHHHHHHHHHc--CCcEEEEECcccc---c-------------c-cCcceeeecccC--CCHHH-hcCC
Confidence 3489999999743 34445555 5899999999861 1 1 346677777642 211 1 1357
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD 188 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td 188 (252)
|.||..=|.|-. + ..+-.+++.+ |.-++|.+-
T Consensus 72 ~lIYSiRPP~El----------~-~~il~lA~~v--~adlii~pL 103 (127)
T PF03686_consen 72 DLIYSIRPPPEL----------Q-PPILELAKKV--GADLIIRPL 103 (127)
T ss_dssp EEEEEES--TTS----------H-HHHHHHHHHH--T-EEEEE-B
T ss_pred cEEEEeCCChHH----------h-HHHHHHHHHh--CCCEEEECC
Confidence 899887665542 2 2444454444 777887763
No 451
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=56.94 E-value=1e+02 Score=26.72 Aligned_cols=96 Identities=20% Similarity=0.234 Sum_probs=54.1
Q ss_pred ceEEEEcC--cccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 67 IQFADIGC--GFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 67 ~~vLDIGc--G~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
..||=.|+ +.|..++.+|+..-+..++++.-+++..+.+.+ + +.+.+--...+....+.. .....+|
T Consensus 150 ~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l~~----~------g~~~~~~~~~~~~~~i~~-~~~~~vd 218 (336)
T TIGR02817 150 RALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVLE----L------GAHHVIDHSKPLKAQLEK-LGLEAVS 218 (336)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHH----c------CCCEEEECCCCHHHHHHH-hcCCCCC
Confidence 45666664 667788888887436789999877765544421 1 333221101122112221 2233577
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
.|+-... ....+....+.|+++|+++...
T Consensus 219 ~vl~~~~--------------~~~~~~~~~~~l~~~G~~v~~~ 247 (336)
T TIGR02817 219 YVFSLTH--------------TDQHFKEIVELLAPQGRFALID 247 (336)
T ss_pred EEEEcCC--------------cHHHHHHHHHHhccCCEEEEEc
Confidence 6653211 1247788889999999987653
No 452
>PRK15076 alpha-galactosidase; Provisional
Probab=56.87 E-value=1.3e+02 Score=28.11 Aligned_cols=44 Identities=11% Similarity=0.047 Sum_probs=28.5
Q ss_pred eEEEEcCcccHHHH----HHH--HHCCCCeEEEEecCHhHHHHHHHHHHH
Q 025492 68 QFADIGCGFGGLLI----SLS--TLFPEVLMIGMELRDKVTEYVKERILA 111 (252)
Q Consensus 68 ~vLDIGcG~G~~~~----~lA--~~~p~~~~iGiDis~~~i~~a~~~~~~ 111 (252)
.|.=||+|+=.++. .++ ...++..++-+|++++.++.+...+..
T Consensus 3 KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~ 52 (431)
T PRK15076 3 KITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARK 52 (431)
T ss_pred EEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHH
Confidence 46679999933333 233 334566899999999887765554433
No 453
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=56.86 E-value=34 Score=31.48 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=34.3
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHh
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALR 113 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~ 113 (252)
..+||=|.+| |.-++.++...| ..+++||+++.......-++...+
T Consensus 36 ~d~vl~ItSa-G~N~L~yL~~~P-~~I~aVDlNp~Q~aLleLKlAair 81 (380)
T PF11899_consen 36 DDRVLTITSA-GCNALDYLLAGP-KRIHAVDLNPAQNALLELKLAAIR 81 (380)
T ss_pred CCeEEEEccC-CchHHHHHhcCC-ceEEEEeCCHHHHHHHHHHHHHHH
Confidence 5589999877 566666666666 579999999988777666655554
No 454
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=56.82 E-value=1e+02 Score=26.79 Aligned_cols=105 Identities=12% Similarity=0.026 Sum_probs=50.5
Q ss_pred eEEEEcCcc-cHHHH-HHHHHCCCCeEEE-EecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 68 QFADIGCGF-GGLLI-SLSTLFPEVLMIG-MELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 68 ~vLDIGcG~-G~~~~-~lA~~~p~~~~iG-iDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
.|-=||||. |.... .+....++..+++ .|.+++..+.. .... +.. -...|..+. + ...|
T Consensus 8 rIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~---a~~~------g~~---~~~~~~eel----l--~~~D 69 (271)
T PRK13302 8 RVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADF---IWGL------RRP---PPVVPLDQL----A--THAD 69 (271)
T ss_pred EEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHH---HHhc------CCC---cccCCHHHH----h--cCCC
Confidence 577789986 44333 2332246677764 47666533221 1111 111 112333322 2 2369
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe-CchHHHHHHHHHHhcCC
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT-DVEELGDWMRSCLENHP 204 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t-d~~~~~~~~~~~~~~~~ 204 (252)
.|++.-|... ..+.+...|+.|..+++.+ ......+.+.+...+++
T Consensus 70 ~Vvi~tp~~~--------------h~e~~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g 116 (271)
T PRK13302 70 IVVEAAPASV--------------LRAIVEPVLAAGKKAIVLSVGALLRNEDLIDLARQNG 116 (271)
T ss_pred EEEECCCcHH--------------HHHHHHHHHHcCCcEEEecchhHHhHHHHHHHHHHcC
Confidence 9998766432 2333456677776555432 11123455555555543
No 455
>PRK06949 short chain dehydrogenase; Provisional
Probab=56.61 E-value=88 Score=25.98 Aligned_cols=58 Identities=14% Similarity=0.050 Sum_probs=37.4
Q ss_pred CceEEEEcCcccHHHHHHHHHC--CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcc
Q 025492 66 KIQFADIGCGFGGLLISLSTLF--PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSM 131 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~--p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~ 131 (252)
...+|=+| |+|.++..+++.. .+..+++++.+++.++.....+.. ...++.++.+|+.
T Consensus 9 ~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~-------~~~~~~~~~~D~~ 68 (258)
T PRK06949 9 GKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEA-------EGGAAHVVSLDVT 68 (258)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-------cCCcEEEEEecCC
Confidence 45788888 4556666666653 366899999988766554443322 1235778888875
No 456
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=55.51 E-value=1e+02 Score=24.27 Aligned_cols=104 Identities=16% Similarity=0.084 Sum_probs=55.4
Q ss_pred EEEEcCcccHHHHHHHHH--CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025492 69 FADIGCGFGGLLISLSTL--FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM 146 (252)
Q Consensus 69 vLDIGcG~G~~~~~lA~~--~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i 146 (252)
|-=||+| ..+..+|++ ..+..+++.|.+++..+...+ .+ +.. ..+..+... ..|.|
T Consensus 4 Ig~IGlG--~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~----------~g---~~~-~~s~~e~~~------~~dvv 61 (163)
T PF03446_consen 4 IGFIGLG--NMGSAMARNLAKAGYEVTVYDRSPEKAEALAE----------AG---AEV-ADSPAEAAE------QADVV 61 (163)
T ss_dssp EEEE--S--HHHHHHHHHHHHTTTEEEEEESSHHHHHHHHH----------TT---EEE-ESSHHHHHH------HBSEE
T ss_pred EEEEchH--HHHHHHHHHHHhcCCeEEeeccchhhhhhhHH----------hh---hhh-hhhhhhHhh------cccce
Confidence 4446665 566666655 236789999999875543321 12 333 233333222 34888
Q ss_pred EEeCCCCccccccccccccCHHHHHH--HHHhhcCCcEEEEE-eCchHHHHHHHHHHhcCC
Q 025492 147 FFLFPDPHFKEKNHRRRVISPHLLDE--YAYVLGVGGIIYTI-TDVEELGDWMRSCLENHP 204 (252)
Q Consensus 147 ~~~fpdP~~k~~h~krr~~~~~~l~~--~~~~LkpgG~l~~~-td~~~~~~~~~~~~~~~~ 204 (252)
++..|++-. -..++.. +...|++|..++-. |-.+.....+.+.+...+
T Consensus 62 i~~v~~~~~----------v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g 112 (163)
T PF03446_consen 62 ILCVPDDDA----------VEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKG 112 (163)
T ss_dssp EE-SSSHHH----------HHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTT
T ss_pred Eeecccchh----------hhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhcc
Confidence 888877541 1135555 66667666655543 345666777777776654
No 457
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.21 E-value=22 Score=32.54 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=29.7
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEE---EecCHhHH
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIG---MELRDKVT 102 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iG---iDis~~~i 102 (252)
..++|.|||.|.++..++...+..+++- +|.....+
T Consensus 184 ~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~s~R~ 222 (420)
T KOG2811|consen 184 SCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRKSSRL 222 (420)
T ss_pred ceEEEecCCchHHHHHHHHHhccccEEEEEeecccchhh
Confidence 4899999999999999999988777666 77765544
No 458
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=54.78 E-value=1.3e+02 Score=26.30 Aligned_cols=97 Identities=14% Similarity=0.180 Sum_probs=55.2
Q ss_pred CceEEEEcCc--ccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC-CcccccCccCCCCc
Q 025492 66 KIQFADIGCG--FGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT-NSMKYIPNYFEKGQ 142 (252)
Q Consensus 66 ~~~vLDIGcG--~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~-da~~~l~~~~~~~s 142 (252)
+..||=.|+| .|..++.+|+.. +.+++.+..+++..+.+. .+ +.+.+.-... +....+........
T Consensus 166 ~~~vlV~g~~~~vg~~~~~~a~~~-g~~v~~~~~~~~~~~~~~----~~------g~~~v~~~~~~~~~~~~~~~~~~~~ 234 (341)
T cd08297 166 GDWVVISGAGGGLGHLGVQYAKAM-GLRVIAIDVGDEKLELAK----EL------GADAFVDFKKSDDVEAVKELTGGGG 234 (341)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHH----Hc------CCcEEEcCCCccHHHHHHHHhcCCC
Confidence 4566666664 688888888886 568899988876554432 11 3222211111 21111222222345
Q ss_pred ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
+|.++-... ....+....+.|+++|+++...
T Consensus 235 vd~vl~~~~--------------~~~~~~~~~~~l~~~g~~v~~g 265 (341)
T cd08297 235 AHAVVVTAV--------------SAAAYEQALDYLRPGGTLVCVG 265 (341)
T ss_pred CCEEEEcCC--------------chHHHHHHHHHhhcCCEEEEec
Confidence 777663221 1247778889999999998753
No 459
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=54.67 E-value=1.2e+02 Score=27.46 Aligned_cols=111 Identities=14% Similarity=0.119 Sum_probs=68.3
Q ss_pred ceEEEEcCcccHHHHHHHHHC--CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEe----CCcccccCccCCC
Q 025492 67 IQFADIGCGFGGLLISLSTLF--PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVR----TNSMKYIPNYFEK 140 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~--p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~----~da~~~l~~~~~~ 140 (252)
+..+-+|+|+-+.+..+.+.+ |+..++-.+.+-.+...+.+. .+..-+.+-. .|....+ ... .
T Consensus 75 ~~~V~~gnGsde~i~~l~~~~~~~gd~vl~~~Ptf~~Y~~~a~~---------~g~~~~~v~~~~~~~d~~~~~-~~~-~ 143 (356)
T COG0079 75 PENVLVGNGSDELIELLVRAFVEPGDTVLIPEPTFSMYEIAAQL---------AGAEVVKVPLKEFRLDLDAIL-AAI-R 143 (356)
T ss_pred cceEEEcCChHHHHHHHHHHhhcCCCEEEEcCCChHHHHHHHHh---------cCCeEEEecccccccCHHHHH-Hhh-h
Confidence 457889999999998888875 444788888888877655432 1332222222 2222111 112 2
Q ss_pred CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHH
Q 025492 141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMR 197 (252)
Q Consensus 141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~ 197 (252)
+..+.|++.-|+-.. .+++..+-+..+...+..++.+++ ++.|.++.-
T Consensus 144 ~~~~lv~i~nPNNPT------G~~~~~~~l~~l~~~~~~~~~vVv---DEAY~eF~~ 191 (356)
T COG0079 144 DKTKLVFLCNPNNPT------GTLLPREELRALLEALPEGGLVVI---DEAYIEFSP 191 (356)
T ss_pred cCCCEEEEeCCCCCC------CCCCCHHHHHHHHHhCCCCcEEEE---eCchhhcCC
Confidence 267889988775432 345667788888888888666655 345555544
No 460
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=54.41 E-value=1.2e+02 Score=26.36 Aligned_cols=105 Identities=14% Similarity=0.020 Sum_probs=58.3
Q ss_pred eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHH-hhcCCCC----------cccEEEEeCCcccccCc
Q 025492 68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILAL-RVSNPGQ----------YQNISVVRTNSMKYIPN 136 (252)
Q Consensus 68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~-~~~~~~~----------~~nv~~~~~da~~~l~~ 136 (252)
.|.=||+|.=...++..-...+..++.+|.+++.++.+.+.+... ......+ ..++.+. .|.. .
T Consensus 6 kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~-~--- 80 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDLE-D--- 80 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCHH-H---
Confidence 466788886443333333334678999999998887765433221 0000011 1234332 2321 1
Q ss_pred cCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025492 137 YFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV 189 (252)
Q Consensus 137 ~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~ 189 (252)
+ ...|.|+...|+...- ...+++.+...++++..|...|-.
T Consensus 81 -~--~~aD~Vieavpe~~~~---------k~~~~~~l~~~~~~~~ii~s~ts~ 121 (292)
T PRK07530 81 -L--ADCDLVIEAATEDETV---------KRKIFAQLCPVLKPEAILATNTSS 121 (292)
T ss_pred -h--cCCCEEEEcCcCCHHH---------HHHHHHHHHhhCCCCcEEEEcCCC
Confidence 1 2568888877764311 125788899999998877644433
No 461
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=54.38 E-value=1.5e+02 Score=26.09 Aligned_cols=121 Identities=11% Similarity=0.068 Sum_probs=62.6
Q ss_pred EEEEcCcc-cHHHHHH-HHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025492 69 FADIGCGF-GGLLISL-STLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM 146 (252)
Q Consensus 69 vLDIGcG~-G~~~~~l-A~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i 146 (252)
|.=||+|. |...... +.......++.+|+++...+.. ...+..... -..+..+...|.. .+ ...|.|
T Consensus 3 I~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~---a~dl~~~~~-~~~~~~i~~~d~~-~l------~~aDiV 71 (308)
T cd05292 3 VAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGE---AMDLAHGTP-FVKPVRIYAGDYA-DC------KGADVV 71 (308)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhH---HHHHHcccc-ccCCeEEeeCCHH-Hh------CCCCEE
Confidence 66789987 3333332 2332235799999988754311 111111110 1122333334432 12 245888
Q ss_pred EEeCCCCcccccccccc--ccCHHHHHHHHHhh---cCCcEEEEEeCchHHHHHHHHHHh
Q 025492 147 FFLFPDPHFKEKNHRRR--VISPHLLDEYAYVL---GVGGIIYTITDVEELGDWMRSCLE 201 (252)
Q Consensus 147 ~~~fpdP~~k~~h~krr--~~~~~~l~~~~~~L---kpgG~l~~~td~~~~~~~~~~~~~ 201 (252)
++..+.|+-. ...... ..+..+++++...| .|+|.+++.|+..+...+....+.
T Consensus 72 iita~~~~~~-~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~~~~~~~~~s 130 (308)
T cd05292 72 VITAGANQKP-GETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYVAYKLS 130 (308)
T ss_pred EEccCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHH
Confidence 8887776532 111000 11333444444443 488999999988777777766554
No 462
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=54.22 E-value=71 Score=28.35 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=52.1
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
+..+.=||+|. |.-...+++.+ +.++++.|.+.... . .+ +. ..+..+.+ . ..|
T Consensus 145 gktvGIiG~G~IG~~vA~~~~~f-gm~V~~~d~~~~~~--------~------~~---~~--~~~l~ell----~--~sD 198 (311)
T PRK08410 145 GKKWGIIGLGTIGKRVAKIAQAF-GAKVVYYSTSGKNK--------N------EE---YE--RVSLEELL----K--TSD 198 (311)
T ss_pred CCEEEEECCCHHHHHHHHHHhhc-CCEEEEECCCcccc--------c------cC---ce--eecHHHHh----h--cCC
Confidence 45788999986 77777777766 67999999853210 0 11 12 22333322 2 348
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
.|+++.|--- .-+.+++...|+ .||||..|+=+.
T Consensus 199 vv~lh~Plt~-----~T~~li~~~~~~----~Mk~~a~lIN~a 232 (311)
T PRK08410 199 IISIHAPLNE-----KTKNLIAYKELK----LLKDGAILINVG 232 (311)
T ss_pred EEEEeCCCCc-----hhhcccCHHHHH----hCCCCeEEEECC
Confidence 8888876322 234456666555 578888776543
No 463
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=54.21 E-value=94 Score=23.73 Aligned_cols=51 Identities=8% Similarity=0.032 Sum_probs=34.5
Q ss_pred CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHh
Q 025492 140 KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLE 201 (252)
Q Consensus 140 ~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~ 201 (252)
...+|.|++.-.... ....++.+...+.++..+++..+.-.-.+.+.+.+.
T Consensus 65 ~~~~D~viv~vKa~~-----------~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~~ 115 (151)
T PF02558_consen 65 AGPYDLVIVAVKAYQ-----------LEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYFP 115 (151)
T ss_dssp HSTESEEEE-SSGGG-----------HHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHST
T ss_pred cCCCcEEEEEecccc-----------hHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHcC
Confidence 467999998753322 236888999999999888887765444455555553
No 464
>PRK07326 short chain dehydrogenase; Provisional
Probab=53.88 E-value=68 Score=26.28 Aligned_cols=57 Identities=9% Similarity=-0.037 Sum_probs=36.1
Q ss_pred CceEEEEcCcccHHHHHHHHHC--CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcc
Q 025492 66 KIQFADIGCGFGGLLISLSTLF--PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSM 131 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~--p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~ 131 (252)
+..+|=+|. +|.++..+++.. .+..+++++.++.........+.. . ..+.++.+|+.
T Consensus 6 ~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~-------~-~~~~~~~~D~~ 64 (237)
T PRK07326 6 GKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNN-------K-GNVLGLAADVR 64 (237)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhc-------c-CcEEEEEccCC
Confidence 347888884 566776666642 367899999887654433322211 1 45788888865
No 465
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=53.12 E-value=1.1e+02 Score=25.57 Aligned_cols=59 Identities=10% Similarity=0.027 Sum_probs=38.5
Q ss_pred CceEEEEcCcccHHHHHHHHHC--CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCccc
Q 025492 66 KIQFADIGCGFGGLLISLSTLF--PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMK 132 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~--p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~ 132 (252)
...+|=.| |+|.++..+|+.. .+.+++.++.+...++.....+.. ...++.++.+|+.+
T Consensus 12 ~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~-------~~~~~~~~~~Dl~d 72 (259)
T PRK08213 12 GKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEA-------LGIDALWIAADVAD 72 (259)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh-------cCCeEEEEEccCCC
Confidence 45788889 4567777777652 366899999987665544433321 12357788888763
No 466
>PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=52.72 E-value=1.2e+02 Score=24.65 Aligned_cols=69 Identities=17% Similarity=0.067 Sum_probs=41.0
Q ss_pred CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEEEeCCCCccccccccccccCH
Q 025492 88 PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISP 167 (252)
Q Consensus 88 p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~ 167 (252)
-+..+.+.+.....+ .|-.+...++.+-. ......+.+..|.++++-+
T Consensus 29 ~G~~v~~~~~~g~~~---------------RGG~~~s~vRi~~~-~~~~~~~~~~~D~lva~d~---------------- 76 (197)
T PRK06274 29 EGFHVRTAETLGMSQ---------------REGSVISHLRFGDE-ISSPLIPEGQADLLLALEP---------------- 76 (197)
T ss_pred cCCCeEeccccCchh---------------hCCeEEEEEEEcCc-cCCCccCCCCCCEEEEcCH----------------
Confidence 466777777655321 13344444444422 2333344678898887643
Q ss_pred HHHHHHHHhhcCCcEEEEEeC
Q 025492 168 HLLDEYAYVLGVGGIIYTITD 188 (252)
Q Consensus 168 ~~l~~~~~~LkpgG~l~~~td 188 (252)
..+......|+|||++++-++
T Consensus 77 ~~~~~~~~~l~~gg~ii~ns~ 97 (197)
T PRK06274 77 AEVARNLHFLKKGGKIIVNAY 97 (197)
T ss_pred HHHHHHHhhcCCCcEEEEECC
Confidence 244566778999999998764
No 467
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=52.67 E-value=1.1e+02 Score=29.35 Aligned_cols=40 Identities=23% Similarity=0.324 Sum_probs=30.5
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHH
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVK 106 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~ 106 (252)
...||=+|||. |..++.+|+.. +..++++|.++..++.++
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~ 204 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQ 204 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHH
Confidence 45899999998 56666666665 567999999998766554
No 468
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=52.60 E-value=1.6e+02 Score=25.76 Aligned_cols=72 Identities=13% Similarity=0.230 Sum_probs=39.8
Q ss_pred ceEEEEcCc-ccH-HHHHHHHHCCC-CeEEEE-ecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCc
Q 025492 67 IQFADIGCG-FGG-LLISLSTLFPE-VLMIGM-ELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQ 142 (252)
Q Consensus 67 ~~vLDIGcG-~G~-~~~~lA~~~p~-~~~iGi-Dis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s 142 (252)
-.|.=|||| .|. .-.......++ ..++|+ |.+++..+...+.+ +.+ -...|.. ..+.+..
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~---------~~~---~~~~~~~----~ll~~~~ 67 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEF---------GIA---KAYTDLE----ELLADPD 67 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHc---------CCC---cccCCHH----HHhcCCC
Confidence 367889999 331 12223333344 355555 88887544333221 333 2233443 3355667
Q ss_pred ccEEEEeCCCCc
Q 025492 143 LTKMFFLFPDPH 154 (252)
Q Consensus 143 ~d~i~~~fpdP~ 154 (252)
+|.|++.-|+..
T Consensus 68 iD~V~Iatp~~~ 79 (342)
T COG0673 68 IDAVYIATPNAL 79 (342)
T ss_pred CCEEEEcCCChh
Confidence 999999888765
No 469
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=52.40 E-value=1.4e+02 Score=26.14 Aligned_cols=94 Identities=10% Similarity=0.151 Sum_probs=52.8
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccE-EEEeCCcccccCccCCCCcc
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNI-SVVRTNSMKYIPNYFEKGQL 143 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv-~~~~~da~~~l~~~~~~~s~ 143 (252)
...||=.|||. |..+..+|+.. +..+++++.++...+.+.+ + +.+.+ .....+....+.. . ..+
T Consensus 164 ~~~vlV~g~g~iG~~~~~~a~~~-G~~vi~~~~~~~~~~~~~~-~---------g~~~~i~~~~~~~~~~~~~-~--~~~ 229 (333)
T cd08296 164 GDLVAVQGIGGLGHLAVQYAAKM-GFRTVAISRGSDKADLARK-L---------GAHHYIDTSKEDVAEALQE-L--GGA 229 (333)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHH-c---------CCcEEecCCCccHHHHHHh-c--CCC
Confidence 34666677654 66677777775 5579999988776655532 1 32211 1111111111211 1 236
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
|.++-.... ...+....+.|+++|+++...
T Consensus 230 d~vi~~~g~--------------~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 230 KLILATAPN--------------AKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred CEEEECCCc--------------hHHHHHHHHHcccCCEEEEEe
Confidence 666532211 247778889999999988753
No 470
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=52.35 E-value=44 Score=23.41 Aligned_cols=81 Identities=12% Similarity=0.134 Sum_probs=41.8
Q ss_pred EcCcccHHHHHHHHH--CCC---CeEE-EEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 72 IGCGFGGLLISLSTL--FPE---VLMI-GMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 72 IGcG~G~~~~~lA~~--~p~---~~~i-GiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
|||| .++..|+.. ..+ .+++ +.+.+++.++...+.. + +.+...+..+.+. .-|.
T Consensus 5 IG~G--~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~---------~---~~~~~~~~~~~~~------~adv 64 (96)
T PF03807_consen 5 IGAG--NMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY---------G---VQATADDNEEAAQ------EADV 64 (96)
T ss_dssp ESTS--HHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC---------T---TEEESEEHHHHHH------HTSE
T ss_pred ECCC--HHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh---------c---cccccCChHHhhc------cCCE
Confidence 5555 455555443 223 5666 5599998665433221 1 3333334333232 4578
Q ss_pred EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEE
Q 025492 146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIY 184 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~ 184 (252)
|++..|.... .+++.++ ..+.++..++
T Consensus 65 vilav~p~~~-----------~~v~~~i-~~~~~~~~vi 91 (96)
T PF03807_consen 65 VILAVKPQQL-----------PEVLSEI-PHLLKGKLVI 91 (96)
T ss_dssp EEE-S-GGGH-----------HHHHHHH-HHHHTTSEEE
T ss_pred EEEEECHHHH-----------HHHHHHH-hhccCCCEEE
Confidence 8887765432 2577777 5566666554
No 471
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=52.35 E-value=17 Score=28.96 Aligned_cols=54 Identities=15% Similarity=0.102 Sum_probs=36.8
Q ss_pred CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcC
Q 025492 141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENH 203 (252)
Q Consensus 141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~ 203 (252)
..+|.|++++ ||.+.. ..-.|..+...|++||.|+++=+++.=...+...+...
T Consensus 68 ~~~D~vvly~----PKaK~e-----~~~lL~~l~~~L~~g~~i~vVGEnk~GIkSa~K~L~~~ 121 (155)
T PF08468_consen 68 QDFDTVVLYW----PKAKAE-----AQYLLANLLSHLPPGTEIFVVGENKGGIKSAEKQLAPY 121 (155)
T ss_dssp TT-SEEEEE------SSHHH-----HHHHHHHHHTTS-TT-EEEEEEEGGGTGGGHHHHHTTT
T ss_pred cCCCEEEEEc----cCcHHH-----HHHHHHHHHHhCCCCCEEEEEecCcccHHHHHHHHHhh
Confidence 4689999985 454432 23488899999999999999998877666666666654
No 472
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=52.08 E-value=73 Score=26.44 Aligned_cols=59 Identities=12% Similarity=0.054 Sum_probs=36.3
Q ss_pred CceEEEEcCcccHHHHHHHHHC--CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcc
Q 025492 66 KIQFADIGCGFGGLLISLSTLF--PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSM 131 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~--p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~ 131 (252)
...+|=.|+ +|.++..+++.. .+..+++++.+....+.....+.. .+..++.++.+|+.
T Consensus 12 ~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~------~~~~~~~~~~~d~~ 72 (247)
T PRK08945 12 DRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEA------AGGPQPAIIPLDLL 72 (247)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHh------cCCCCceEEEeccc
Confidence 447888895 566666666552 367899999988655443332322 23345677777763
No 473
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=51.86 E-value=1.2e+02 Score=24.24 Aligned_cols=96 Identities=14% Similarity=0.074 Sum_probs=55.8
Q ss_pred ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcc--cccCccCCCCccc
Q 025492 67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSM--KYIPNYFEKGQLT 144 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~--~~l~~~~~~~s~d 144 (252)
..|+=|||=+-...+.- ...+..+++-.|++..- ... + ++ .|+.-|.. ..++..+ .+++|
T Consensus 27 ~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF--------~~~------~-~~-~F~fyD~~~p~~~~~~l-~~~~d 88 (162)
T PF10237_consen 27 TRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRF--------EQF------G-GD-EFVFYDYNEPEELPEEL-KGKFD 88 (162)
T ss_pred CEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchH--------Hhc------C-Cc-ceEECCCCChhhhhhhc-CCCce
Confidence 47888888765443333 24567788888988642 111 2 23 34444443 2344334 67999
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD 188 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td 188 (252)
.|++..|- -. .-....+...+..++++++.+++.|.
T Consensus 89 ~vv~DPPF---l~-----~ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 89 VVVIDPPF---LS-----EECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred EEEECCCC---CC-----HHHHHHHHHHHHHHhCccceEEEecH
Confidence 99985443 10 00111234666667789999999983
No 474
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=51.63 E-value=70 Score=27.96 Aligned_cols=102 Identities=11% Similarity=0.106 Sum_probs=58.9
Q ss_pred eEEEEcCcc--cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHH-hhcCCCC----------cccEEEEeCCccccc
Q 025492 68 QFADIGCGF--GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILAL-RVSNPGQ----------YQNISVVRTNSMKYI 134 (252)
Q Consensus 68 ~vLDIGcG~--G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~-~~~~~~~----------~~nv~~~~~da~~~l 134 (252)
.|-=||+|. +.++..+|. .+..|+.+|.+++.++.+.+++... ......+ +.++.+ ..|.. .+
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~~-~~ 82 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCAR--AGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDLG-DF 82 (286)
T ss_pred EEEEEcccHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCHH-Hh
Confidence 577788885 223333333 3789999999999988877665432 1111111 122322 22321 11
Q ss_pred CccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhh-cCCcEEEEEeC
Q 025492 135 PNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVL-GVGGIIYTITD 188 (252)
Q Consensus 135 ~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~L-kpgG~l~~~td 188 (252)
...|.|+-..|+...- ...++..+...+ +|+..|.-.|-
T Consensus 83 ------~~~d~ViEav~E~~~~---------K~~l~~~l~~~~~~~~~il~snTS 122 (286)
T PRK07819 83 ------ADRQLVIEAVVEDEAV---------KTEIFAELDKVVTDPDAVLASNTS 122 (286)
T ss_pred ------CCCCEEEEecccCHHH---------HHHHHHHHHHhhCCCCcEEEECCC
Confidence 3568888776665432 125888999998 77766655443
No 475
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=51.57 E-value=1.8e+02 Score=25.91 Aligned_cols=122 Identities=9% Similarity=0.020 Sum_probs=65.6
Q ss_pred CceEEEEcCcc-cHHHHHHHHHCCCC-eEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025492 66 KIQFADIGCGF-GGLLISLSTLFPEV-LMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL 143 (252)
Q Consensus 66 ~~~vLDIGcG~-G~~~~~lA~~~p~~-~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~ 143 (252)
...|.=||+|. |..+..+....+-. .+.-+|++++.+... ...++.... -..++.+...|.. .+ ...
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~---~~Dl~~~~~-~~~~~~i~~~~~~-~~------~~a 74 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGD---AMDLSHAVP-FTSPTKIYAGDYS-DC------KDA 74 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHH---HHHHHhhcc-ccCCeEEEeCCHH-Hh------CCC
Confidence 45899999987 55554444444332 688999987754222 222221111 1134555544432 22 235
Q ss_pred cEEEEeCCCCcccccccccc---ccCHHHHHHHHHhhc---CCcEEEEEeCchHHHHHHHHHH
Q 025492 144 TKMFFLFPDPHFKEKNHRRR---VISPHLLDEYAYVLG---VGGIIYTITDVEELGDWMRSCL 200 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr---~~~~~~l~~~~~~Lk---pgG~l~~~td~~~~~~~~~~~~ 200 (252)
|.|++..-.|.- ....|. ..+..+++++...++ |+|.+++.|+..+...+.....
T Consensus 75 divIitag~~~k--~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~~~~~~~k~ 135 (315)
T PRK00066 75 DLVVITAGAPQK--PGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDILTYATWKL 135 (315)
T ss_pred CEEEEecCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHHHHHHHHHH
Confidence 777765544431 111111 123456666655554 8999999998777666555444
No 476
>PRK07904 short chain dehydrogenase; Provisional
Probab=51.16 E-value=90 Score=26.30 Aligned_cols=77 Identities=12% Similarity=0.199 Sum_probs=46.1
Q ss_pred ceEEEEcCcccHHHHHHHHHC---CCCeEEEEecCHhH-HHHHHHHHHHHhhcCCCCcccEEEEeCCcccc------cCc
Q 025492 67 IQFADIGCGFGGLLISLSTLF---PEVLMIGMELRDKV-TEYVKERILALRVSNPGQYQNISVVRTNSMKY------IPN 136 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~---p~~~~iGiDis~~~-i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~------l~~ 136 (252)
..||=.|++ |.++..+|++. .+.+++.++.++.. ++.+.+.+.. .+..++.++.+|+.+. +..
T Consensus 9 ~~vlItGas-~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~------~~~~~v~~~~~D~~~~~~~~~~~~~ 81 (253)
T PRK07904 9 QTILLLGGT-SEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKA------AGASSVEVIDFDALDTDSHPKVIDA 81 (253)
T ss_pred cEEEEEcCC-cHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHh------cCCCceEEEEecCCChHHHHHHHHH
Confidence 378999985 56677777652 24689999888763 4443333322 1334789999987531 111
Q ss_pred cCCCCcccEEEEeC
Q 025492 137 YFEKGQLTKMFFLF 150 (252)
Q Consensus 137 ~~~~~s~d~i~~~f 150 (252)
....+.+|.++.+.
T Consensus 82 ~~~~g~id~li~~a 95 (253)
T PRK07904 82 AFAGGDVDVAIVAF 95 (253)
T ss_pred HHhcCCCCEEEEee
Confidence 11125688877654
No 477
>PHA03108 poly(A) polymerase small subunit; Provisional
Probab=51.04 E-value=24 Score=30.96 Aligned_cols=35 Identities=17% Similarity=0.151 Sum_probs=30.2
Q ss_pred CceEEEEcCcccHHHHHHHHHCCC----CeEEEEecCHh
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPE----VLMIGMELRDK 100 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~----~~~iGiDis~~ 100 (252)
+.+||=||+|.|.++..|...+++ ..++-+|.++-
T Consensus 61 g~~VVYiGSApG~HI~~L~~lf~~lg~~ikw~LiDp~~h 99 (300)
T PHA03108 61 GSTIVYIGSAPGTHIRYLRDHFYSLGVVIKWMLIDGRKH 99 (300)
T ss_pred CceEEEecCCCCccHHHHHHHHHhcCCCeEEEEECCCcc
Confidence 349999999999999999998876 57899998774
No 478
>PRK07454 short chain dehydrogenase; Provisional
Probab=50.78 E-value=1.1e+02 Score=25.11 Aligned_cols=57 Identities=7% Similarity=-0.048 Sum_probs=36.2
Q ss_pred ceEEEEcCcccHHHHHHHHHC--CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcc
Q 025492 67 IQFADIGCGFGGLLISLSTLF--PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSM 131 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~--p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~ 131 (252)
..+|=.|+ +|.++..+++.. .+..|++++.++.........+.. ...++.++.+|+.
T Consensus 7 k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~~D~~ 65 (241)
T PRK07454 7 PRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRS-------TGVKAAAYSIDLS 65 (241)
T ss_pred CEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-------CCCcEEEEEccCC
Confidence 46888885 566666666652 356899999987654433332221 1246888899875
No 479
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=50.49 E-value=1.1e+02 Score=27.45 Aligned_cols=102 Identities=13% Similarity=0.117 Sum_probs=56.8
Q ss_pred eEEEEcCcc-c-HHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHH-hhcCCCC------cccEEEEeCCcccccCccC
Q 025492 68 QFADIGCGF-G-GLLISLSTLFPEVLMIGMELRDKVTEYVKERILAL-RVSNPGQ------YQNISVVRTNSMKYIPNYF 138 (252)
Q Consensus 68 ~vLDIGcG~-G-~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~-~~~~~~~------~~nv~~~~~da~~~l~~~~ 138 (252)
.|-=||+|. | .++..+|. .+..|+..|++++.++.+...+... ......+ ..++.+.. |..+.+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~--aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~av---- 81 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALA--HGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEACV---- 81 (321)
T ss_pred EEEEECcCHHHHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHHHh----
Confidence 567778874 2 22333333 3889999999998877665544321 1111111 12233221 221111
Q ss_pred CCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 139 EKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 139 ~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
...|.|+-.-|....- ...+++++.+.++|+-.|.-.|
T Consensus 82 --~~aDlViEavpE~l~v---------K~~lf~~l~~~~~~~aIlaSnT 119 (321)
T PRK07066 82 --ADADFIQESAPEREAL---------KLELHERISRAAKPDAIIASST 119 (321)
T ss_pred --cCCCEEEECCcCCHHH---------HHHHHHHHHHhCCCCeEEEECC
Confidence 3568888877754421 2258899999999987554444
No 480
>PRK08251 short chain dehydrogenase; Provisional
Probab=50.49 E-value=1.2e+02 Score=25.10 Aligned_cols=60 Identities=17% Similarity=0.067 Sum_probs=38.0
Q ss_pred ceEEEEcCcccHHHHHHHHHC--CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCccc
Q 025492 67 IQFADIGCGFGGLLISLSTLF--PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMK 132 (252)
Q Consensus 67 ~~vLDIGcG~G~~~~~lA~~~--p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~ 132 (252)
..+|=.|+ +|.++..+|++. .+.+++.++.++...+.....+... ....++.++.+|+.+
T Consensus 3 k~vlItGa-s~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~~D~~~ 64 (248)
T PRK08251 3 QKILITGA-SSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLAR-----YPGIKVAVAALDVND 64 (248)
T ss_pred CEEEEECC-CCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhh-----CCCceEEEEEcCCCC
Confidence 36888885 566777766653 2568999999887655443332211 113468888998763
No 481
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=50.43 E-value=73 Score=27.43 Aligned_cols=95 Identities=17% Similarity=0.155 Sum_probs=52.3
Q ss_pred CceEEEEcC--cccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC--CcccccCccCCCC
Q 025492 66 KIQFADIGC--GFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT--NSMKYIPNYFEKG 141 (252)
Q Consensus 66 ~~~vLDIGc--G~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~--da~~~l~~~~~~~ 141 (252)
...+|=.|. |.|..+..++... +..++.++.++...+.+.. . +...+ +-.. +....+.......
T Consensus 167 ~~~vlI~g~~~~iG~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~----~------~~~~~-~~~~~~~~~~~~~~~~~~~ 234 (342)
T cd08266 167 GETVLVHGAGSGVGSAAIQIAKLF-GATVIATAGSEDKLERAKE----L------GADYV-IDYRKEDFVREVRELTGKR 234 (342)
T ss_pred CCEEEEECCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----c------CCCeE-EecCChHHHHHHHHHhCCC
Confidence 345666665 4577777777775 5678889888765544321 1 22111 1111 1111111112234
Q ss_pred cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
.+|.++-+... ..+..+.+.|+++|.++...
T Consensus 235 ~~d~~i~~~g~---------------~~~~~~~~~l~~~G~~v~~~ 265 (342)
T cd08266 235 GVDVVVEHVGA---------------ATWEKSLKSLARGGRLVTCG 265 (342)
T ss_pred CCcEEEECCcH---------------HHHHHHHHHhhcCCEEEEEe
Confidence 57777654331 35667778899999988764
No 482
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=50.42 E-value=1.7e+02 Score=26.41 Aligned_cols=37 Identities=14% Similarity=0.225 Sum_probs=24.2
Q ss_pred CceEEEEcCcccHHHHHHHHHCC-CCeEEE-EecCHhHH
Q 025492 66 KIQFADIGCGFGGLLISLSTLFP-EVLMIG-MELRDKVT 102 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iG-iDis~~~i 102 (252)
...|.=||||.|..-+......| +..++| +|.+++..
T Consensus 3 ~~rVgViG~~~G~~h~~al~~~~~~~eLvaV~d~~~erA 41 (343)
T TIGR01761 3 VQSVVVCGTRFGQFYLAAFAAAPERFELAGILAQGSERS 41 (343)
T ss_pred CcEEEEEeHHHHHHHHHHHHhCCCCcEEEEEEcCCHHHH
Confidence 34788899988865444444456 677777 57776543
No 483
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=50.31 E-value=1.7e+02 Score=26.74 Aligned_cols=48 Identities=19% Similarity=0.373 Sum_probs=35.6
Q ss_pred CCceEEEEcCcccHHHH----HHHHHC---CCCeEEEEec----CHhHHHHHHHHHHHH
Q 025492 65 KKIQFADIGCGFGGLLI----SLSTLF---PEVLMIGMEL----RDKVTEYVKERILAL 112 (252)
Q Consensus 65 ~~~~vLDIGcG~G~~~~----~lA~~~---p~~~~iGiDi----s~~~i~~a~~~~~~~ 112 (252)
..-.|+|+|.|.|.--. .||.+. |..+++||+. +...++.+.+++.+.
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~f 168 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEF 168 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHH
Confidence 45689999999996544 445442 5678999999 787888887776553
No 484
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=50.28 E-value=76 Score=25.64 Aligned_cols=90 Identities=20% Similarity=0.172 Sum_probs=51.2
Q ss_pred CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCH-hHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRD-KVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~-~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
...|.=||+|+=..+.++--+..+.+|+-..... ...+.|++ .+.. ..+..+... .-|
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~----------~Gf~-----v~~~~eAv~------~aD 62 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKA----------DGFE-----VMSVAEAVK------KAD 62 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHH----------TT-E-----CCEHHHHHH------C-S
T ss_pred CCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHH----------CCCe-----eccHHHHHh------hCC
Confidence 3478889999876666666666677776444443 34443332 2432 233333222 358
Q ss_pred EEEEeCCCCccccccccccccCHHHH-HHHHHhhcCCcEEEEEe
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLL-DEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l-~~~~~~LkpgG~l~~~t 187 (252)
.|++..||.- ++.+. +++...|++|-.|.|..
T Consensus 63 vV~~L~PD~~-----------q~~vy~~~I~p~l~~G~~L~fah 95 (165)
T PF07991_consen 63 VVMLLLPDEV-----------QPEVYEEEIAPNLKPGATLVFAH 95 (165)
T ss_dssp EEEE-S-HHH-----------HHHHHHHHHHHHS-TT-EEEESS
T ss_pred EEEEeCChHH-----------HHHHHHHHHHhhCCCCCEEEeCC
Confidence 9999999864 23455 89999999999999965
No 485
>PRK11579 putative oxidoreductase; Provisional
Probab=50.01 E-value=1.9e+02 Score=25.78 Aligned_cols=68 Identities=15% Similarity=0.263 Sum_probs=39.1
Q ss_pred eEEEEcCcc-cH-HHHHHHHHCCCCeEEE-EecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 68 QFADIGCGF-GG-LLISLSTLFPEVLMIG-MELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 68 ~vLDIGcG~-G~-~~~~lA~~~p~~~~iG-iDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
.|.=||||. |. +........|+..++| +|.+++.. . . ....+.+ ..|..+ .+.+..+|
T Consensus 6 rvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~---~----~-------~~~~~~~-~~~~~e----ll~~~~vD 66 (346)
T PRK11579 6 RVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKV---K----A-------DWPTVTV-VSEPQH----LFNDPNID 66 (346)
T ss_pred eEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHH---H----h-------hCCCCce-eCCHHH----HhcCCCCC
Confidence 688899997 43 3333344567888876 56655321 1 1 1112222 345443 34466899
Q ss_pred EEEEeCCCCc
Q 025492 145 KMFFLFPDPH 154 (252)
Q Consensus 145 ~i~~~fpdP~ 154 (252)
.|++.-|...
T Consensus 67 ~V~I~tp~~~ 76 (346)
T PRK11579 67 LIVIPTPNDT 76 (346)
T ss_pred EEEEcCCcHH
Confidence 9999877655
No 486
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=49.81 E-value=87 Score=27.43 Aligned_cols=88 Identities=16% Similarity=0.156 Sum_probs=47.8
Q ss_pred EEEEcCcccHHHHHHHHH--CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025492 69 FADIGCGFGGLLISLSTL--FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM 146 (252)
Q Consensus 69 vLDIGcG~G~~~~~lA~~--~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i 146 (252)
|-=||+|. ++..||.. ..+..+++.|.+++.++.+.+ . +.. . ..+..+ +...+ ...|.|
T Consensus 3 Ig~IGlG~--mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~----~------g~~---~-~~s~~~-~~~~~--~~~dvI 63 (298)
T TIGR00872 3 LGLIGLGR--MGANIVRRLAKRGHDCVGYDHDQDAVKAMKE----D------RTT---G-VANLRE-LSQRL--SAPRVV 63 (298)
T ss_pred EEEEcchH--HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----c------CCc---c-cCCHHH-HHhhc--CCCCEE
Confidence 44577765 33333332 346788999999876544322 1 111 0 122221 11111 245888
Q ss_pred EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025492 147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186 (252)
Q Consensus 147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~ 186 (252)
++..|+... ..+++.+...|++|-.++-.
T Consensus 64 i~~vp~~~~-----------~~v~~~l~~~l~~g~ivid~ 92 (298)
T TIGR00872 64 WVMVPHGIV-----------DAVLEELAPTLEKGDIVIDG 92 (298)
T ss_pred EEEcCchHH-----------HHHHHHHHhhCCCCCEEEEC
Confidence 888777532 25778888888887655443
No 487
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=49.80 E-value=1.7e+02 Score=25.31 Aligned_cols=101 Identities=15% Similarity=0.144 Sum_probs=54.9
Q ss_pred eEEEEcCcc-cH-HHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHH----Hhhc-CCCC---------cccEEEEeCCcc
Q 025492 68 QFADIGCGF-GG-LLISLSTLFPEVLMIGMELRDKVTEYVKERILA----LRVS-NPGQ---------YQNISVVRTNSM 131 (252)
Q Consensus 68 ~vLDIGcG~-G~-~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~----~~~~-~~~~---------~~nv~~~~~da~ 131 (252)
.|.=||||. |. ++..++.. +..++.+|.+++.++.+.+.+.. +... .... ..++.+. .|..
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~ 81 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFART--GYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSYE 81 (291)
T ss_pred EEEEECccHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCHH
Confidence 467788885 32 23333333 66899999999988776554332 1000 0001 1122221 1211
Q ss_pred cccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 132 KYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 132 ~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
. + ...|.|+...|.+..- ...+++++...++++..|.-.|
T Consensus 82 -~----~--~~aDlVieav~e~~~~---------k~~~~~~l~~~~~~~~il~S~t 121 (291)
T PRK06035 82 -S----L--SDADFIVEAVPEKLDL---------KRKVFAELERNVSPETIIASNT 121 (291)
T ss_pred -H----h--CCCCEEEEcCcCcHHH---------HHHHHHHHHhhCCCCeEEEEcC
Confidence 1 1 2468888877665421 1258888888888877654333
No 488
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=49.58 E-value=1.2e+02 Score=23.40 Aligned_cols=122 Identities=14% Similarity=0.146 Sum_probs=62.9
Q ss_pred EEEEcC-cc-cHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025492 69 FADIGC-GF-GGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145 (252)
Q Consensus 69 vLDIGc-G~-G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~ 145 (252)
|.=||+ |. |..+..+....+ ...+.-+|+++...+ .....+.........++.+...+.. .+. ..|.
T Consensus 3 V~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~---g~a~Dl~~~~~~~~~~~~i~~~~~~-~~~------~aDi 72 (141)
T PF00056_consen 3 VAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAE---GEALDLSHASAPLPSPVRITSGDYE-ALK------DADI 72 (141)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHH---HHHHHHHHHHHGSTEEEEEEESSGG-GGT------TESE
T ss_pred EEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccce---eeehhhhhhhhhccccccccccccc-ccc------cccE
Confidence 556888 65 555554444444 345888999976432 2222222111112234555444432 232 4577
Q ss_pred EEEeCCCCcccccccccc--ccCHHHHHHHHHhhc---CCcEEEEEeCchHHHHHHHHHHh
Q 025492 146 MFFLFPDPHFKEKNHRRR--VISPHLLDEYAYVLG---VGGIIYTITDVEELGDWMRSCLE 201 (252)
Q Consensus 146 i~~~fpdP~~k~~h~krr--~~~~~~l~~~~~~Lk---pgG~l~~~td~~~~~~~~~~~~~ 201 (252)
|++.--.|. +....+.. -.+..+++++.+.++ |.|.+++.|+.-+...+......
T Consensus 73 vvitag~~~-~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd~~t~~~~~~s 132 (141)
T PF00056_consen 73 VVITAGVPR-KPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVDVMTYVAQKYS 132 (141)
T ss_dssp EEETTSTSS-STTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHHHHHHHHHHHH
T ss_pred EEEeccccc-cccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHHHHHHHHHHhh
Confidence 777654443 11111111 123445556555554 88999999988776666655543
No 489
>PLN02780 ketoreductase/ oxidoreductase
Probab=48.94 E-value=92 Score=27.53 Aligned_cols=60 Identities=10% Similarity=-0.056 Sum_probs=36.8
Q ss_pred CceEEEEcCcccHHHHHHHHHC--CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcc
Q 025492 66 KIQFADIGCGFGGLLISLSTLF--PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSM 131 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~--p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~ 131 (252)
+..+|=.|+++| ++.++|+.. .+.+++.++.+++.++...+.+... .+..++..+.+|..
T Consensus 53 g~~~lITGAs~G-IG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~-----~~~~~~~~~~~Dl~ 114 (320)
T PLN02780 53 GSWALVTGPTDG-IGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSK-----YSKTQIKTVVVDFS 114 (320)
T ss_pred CCEEEEeCCCcH-HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHH-----CCCcEEEEEEEECC
Confidence 357899997654 444555442 3678999999988776555444321 11235666666654
No 490
>PRK08703 short chain dehydrogenase; Provisional
Probab=48.78 E-value=88 Score=25.78 Aligned_cols=58 Identities=16% Similarity=0.098 Sum_probs=34.8
Q ss_pred CceEEEEcCcccHHHHHHHHHC--CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCc
Q 025492 66 KIQFADIGCGFGGLLISLSTLF--PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS 130 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~~~lA~~~--p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da 130 (252)
+..+|=.|| +|.++..+++.. .+.++++++.++...+.....+... +...+.++.+|.
T Consensus 6 ~k~vlItG~-sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~~D~ 65 (239)
T PRK08703 6 DKTILVTGA-SQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEA------GHPEPFAIRFDL 65 (239)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHc------CCCCcceEEeee
Confidence 347888896 455666666552 3678999999887654443333221 223455666665
No 491
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=48.18 E-value=1.2e+02 Score=25.19 Aligned_cols=58 Identities=12% Similarity=-0.109 Sum_probs=35.9
Q ss_pred eEEEEcCcccHHHHHHHHHC--CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcc
Q 025492 68 QFADIGCGFGGLLISLSTLF--PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSM 131 (252)
Q Consensus 68 ~vLDIGcG~G~~~~~lA~~~--p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~ 131 (252)
.+|=.|. +|.++..+|+.. .+..++.+|.+....+.....+... .+..++.++.+|+.
T Consensus 4 ~ilItG~-~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~~D~~ 63 (259)
T PRK12384 4 VAVVIGG-GQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAE-----YGEGMAYGFGADAT 63 (259)
T ss_pred EEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh-----cCCceeEEEEccCC
Confidence 5788885 466666666542 3678999999876554433333221 12235888888875
No 492
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=47.25 E-value=65 Score=27.77 Aligned_cols=117 Identities=15% Similarity=0.171 Sum_probs=59.9
Q ss_pred EEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEEEe
Q 025492 70 ADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMFFL 149 (252)
Q Consensus 70 LDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~~~ 149 (252)
|..=.|+=.++..+.+. .-+++.+|+.+.-.+..++++ .+..++++.+.|..+.+...+|+.+=-.+++.
T Consensus 62 l~~YPGSP~ia~~llR~--qDrl~l~ELHp~d~~~L~~~~--------~~~~~v~v~~~DG~~~l~allPP~~rRglVLI 131 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLRE--QDRLVLFELHPQDFEALKKNF--------RRDRRVRVHHRDGYEGLKALLPPPERRGLVLI 131 (245)
T ss_dssp --EEE-HHHHHHHHS-T--TSEEEEE--SHHHHHHHTTS----------TTS-EEEE-S-HHHHHHHH-S-TTS-EEEEE
T ss_pred cCcCCCCHHHHHHhCCc--cceEEEEecCchHHHHHHHHh--------ccCCccEEEeCchhhhhhhhCCCCCCCeEEEE
Confidence 34445555555555444 568999999998665544333 23468999999988766555666553333332
Q ss_pred CCCCccccccccccccCHHHHHHHHHhhc--CCcEEEEEeCc--hHHHHHHHHHHhcC
Q 025492 150 FPDPHFKEKNHRRRVISPHLLDEYAYVLG--VGGIIYTITDV--EELGDWMRSCLENH 203 (252)
Q Consensus 150 fpdP~~k~~h~krr~~~~~~l~~~~~~Lk--pgG~l~~~td~--~~~~~~~~~~~~~~ 203 (252)
||-+..+.. ...++..+...+| +.|++.+-... ..-.+.+.+.+...
T Consensus 132 --DPpYE~~~d-----y~~v~~~l~~a~kR~~~G~~~iWYPi~~~~~~~~~~~~l~~~ 182 (245)
T PF04378_consen 132 --DPPYEQKDD-----YQRVVDALAKALKRWPTGVYAIWYPIKDRERVDRFLRALKAL 182 (245)
T ss_dssp -------STTH-----HHHHHHHHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred --CCCCCCchH-----HHHHHHHHHHHHHhcCCcEEEEEeecccHHHHHHHHHHHHhc
Confidence 554332222 2346777777776 88998875542 34456666666543
No 493
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=47.05 E-value=94 Score=27.65 Aligned_cols=60 Identities=15% Similarity=0.079 Sum_probs=44.8
Q ss_pred CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcccc
Q 025492 141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEAL 209 (252)
Q Consensus 141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~ 209 (252)
+.+|.+.+.. +|.+. .....|.++.+.|.|||.|++.-++++-.......+........+
T Consensus 36 ~~~d~~l~~~----pK~~~-----e~e~qLa~ll~~~~~g~~i~v~g~~~~g~~s~~k~l~~~~~~~~~ 95 (300)
T COG2813 36 DDFDAVLLYW----PKHKA-----EAEFQLAQLLARLPPGGEIVVVGEKRDGVRSAEKMLEKYGGPTKT 95 (300)
T ss_pred CCCCEEEEEc----cCchH-----HHHHHHHHHHhhCCCCCeEEEEecccchHHHHHHHHHHhcCcccc
Confidence 3788988874 44322 234578889999999999999999998888888888776544444
No 494
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=46.56 E-value=2.5e+02 Score=26.13 Aligned_cols=121 Identities=10% Similarity=0.001 Sum_probs=61.7
Q ss_pred EEEEcCcccHHHHHH----HH--HCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEE-eCCcccccCccCCCC
Q 025492 69 FADIGCGFGGLLISL----ST--LFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVV-RTNSMKYIPNYFEKG 141 (252)
Q Consensus 69 vLDIGcG~G~~~~~l----A~--~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~-~~da~~~l~~~~~~~ 141 (252)
|.=||.|+-.++..+ +. ..++..++-+|++++.++.....+...-. ..+. ..++. ..|..+.+.
T Consensus 3 IaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~--~~~~-~~~I~~ttD~~eal~------ 73 (423)
T cd05297 3 IAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVE--ELGA-PLKIEATTDRREALD------ 73 (423)
T ss_pred EEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHH--hcCC-CeEEEEeCCHHHHhc------
Confidence 667899995444333 21 24456899999999887766554433211 1111 23332 344332222
Q ss_pred cccEEEEeCCCCccccccc------ccc-----------------ccCHHHHHHHHHhhc---CCcEEEEEeCchHHHHH
Q 025492 142 QLTKMFFLFPDPHFKEKNH------RRR-----------------VISPHLLDEYAYVLG---VGGIIYTITDVEELGDW 195 (252)
Q Consensus 142 s~d~i~~~fpdP~~k~~h~------krr-----------------~~~~~~l~~~~~~Lk---pgG~l~~~td~~~~~~~ 195 (252)
..|.|+...+.+-...+.. |.- ..+...+..+++.++ |.+.++..|+..+...+
T Consensus 74 ~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~ 153 (423)
T cd05297 74 GADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTW 153 (423)
T ss_pred CCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHH
Confidence 3477777665432111111 000 112224555555555 78888777776655544
Q ss_pred HHH
Q 025492 196 MRS 198 (252)
Q Consensus 196 ~~~ 198 (252)
++.
T Consensus 154 ~~~ 156 (423)
T cd05297 154 ALN 156 (423)
T ss_pred HHH
Confidence 443
No 495
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=46.39 E-value=19 Score=29.08 Aligned_cols=31 Identities=6% Similarity=-0.003 Sum_probs=22.9
Q ss_pred eEEEEcCcccHHHHHHHHHCCCCeEEEEecCH
Q 025492 68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRD 99 (252)
Q Consensus 68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~ 99 (252)
..|=+|+. =-+...+|-++...+++-||.++
T Consensus 4 ~g~V~GS~-~PwvEv~aL~~GA~~iltveyn~ 34 (177)
T PF03269_consen 4 SGLVVGSM-QPWVEVMALQHGAAKILTVEYNK 34 (177)
T ss_pred eEEEEecC-CchhhHHHHHcCCceEEEEeecc
Confidence 46667777 36677788888777888888764
No 496
>PRK07680 late competence protein ComER; Validated
Probab=46.10 E-value=89 Score=26.86 Aligned_cols=90 Identities=20% Similarity=0.105 Sum_probs=44.8
Q ss_pred EEEEcCcc--cHHHHHHHHHC--CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 69 FADIGCGF--GGLLISLSTLF--PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 69 vLDIGcG~--G~~~~~lA~~~--p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
|.=||||. +.++..+.+.. ....+++++.+++..+.... ...++.+. .|..+.+ ...|
T Consensus 3 I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~-----------~~~g~~~~-~~~~~~~------~~aD 64 (273)
T PRK07680 3 IGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKE-----------RYPGIHVA-KTIEEVI------SQSD 64 (273)
T ss_pred EEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHH-----------HcCCeEEE-CCHHHHH------HhCC
Confidence 55578876 22333333332 11368889998765432211 11123332 2332212 2357
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t 187 (252)
.|++..|+.. ...+++.+...|+++..++-.+
T Consensus 65 iVilav~p~~-----------~~~vl~~l~~~l~~~~~iis~~ 96 (273)
T PRK07680 65 LIFICVKPLD-----------IYPLLQKLAPHLTDEHCLVSIT 96 (273)
T ss_pred EEEEecCHHH-----------HHHHHHHHHhhcCCCCEEEEEC
Confidence 8877765322 1246666766777776555444
No 497
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=45.57 E-value=45 Score=30.15 Aligned_cols=55 Identities=16% Similarity=0.231 Sum_probs=40.8
Q ss_pred CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcC
Q 025492 140 KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENH 203 (252)
Q Consensus 140 ~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~ 203 (252)
...+|.|++..| |.+.. ..-.|..+.+.|+|||.|++.=.+..-...+...+...
T Consensus 74 ~~~~d~~~~~~p----k~k~~-----~~~~l~~~~~~l~~g~~i~~~G~~~~g~~s~~k~~~~~ 128 (342)
T PRK09489 74 VADCDTLIYYWP----KNKQE-----AQFQLMNLLSLLPVGTDIFVVGENRSGVRSAEKMLADY 128 (342)
T ss_pred CCCCCEEEEECC----CCHHH-----HHHHHHHHHHhCCCCCEEEEEEeccccHHHHHHHHHHh
Confidence 357899998865 32221 23588899999999999999988887777666666554
No 498
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=45.50 E-value=2e+02 Score=24.84 Aligned_cols=98 Identities=20% Similarity=0.258 Sum_probs=55.8
Q ss_pred CceEEEEcC--cccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025492 66 KIQFADIGC--GFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL 143 (252)
Q Consensus 66 ~~~vLDIGc--G~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~ 143 (252)
...||=+|. +.|..++.+|+......+++++.++...+.+.+ . +...+--...+....+. ......+
T Consensus 150 g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~------g~~~~~~~~~~~~~~i~-~~~~~~~ 218 (336)
T cd08252 150 GKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASRPESIAWVKE----L------GADHVINHHQDLAEQLE-ALGIEPV 218 (336)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCChhhHHHHHh----c------CCcEEEeCCccHHHHHH-hhCCCCC
Confidence 346666664 557777888888743789999988876655422 1 33221100111111121 1222357
Q ss_pred cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025492 144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD 188 (252)
Q Consensus 144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td 188 (252)
|.++-..+. ...+..+.+.|+++|+++..+.
T Consensus 219 d~vl~~~~~--------------~~~~~~~~~~l~~~g~~v~~g~ 249 (336)
T cd08252 219 DYIFCLTDT--------------DQHWDAMAELIAPQGHICLIVD 249 (336)
T ss_pred CEEEEccCc--------------HHHHHHHHHHhcCCCEEEEecC
Confidence 766643322 1377888899999999987653
No 499
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=45.48 E-value=1.4e+02 Score=22.87 Aligned_cols=68 Identities=15% Similarity=0.234 Sum_probs=42.9
Q ss_pred CceEEEEcCcccHHH-HHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025492 66 KIQFADIGCGFGGLL-ISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT 144 (252)
Q Consensus 66 ~~~vLDIGcG~G~~~-~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d 144 (252)
...|+|||-|-=.-. ..|+++ +..++++||.+. . .. ..++++.-|+.. ++.---...|
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~--g~dv~atDI~~~---~-------------a~-~g~~~v~DDitn--P~~~iY~~A~ 72 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAER--GFDVLATDINEK---T-------------AP-EGLRFVVDDITN--PNISIYEGAD 72 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHc--CCcEEEEecccc---c-------------Cc-ccceEEEccCCC--ccHHHhhCcc
Confidence 348999999864333 344444 578999999875 1 12 458898888752 2111113468
Q ss_pred EEEEeCCCCc
Q 025492 145 KMFFLFPDPH 154 (252)
Q Consensus 145 ~i~~~fpdP~ 154 (252)
.|+..=|.|-
T Consensus 73 lIYSiRpppE 82 (129)
T COG1255 73 LIYSIRPPPE 82 (129)
T ss_pred ceeecCCCHH
Confidence 8888766664
No 500
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=45.39 E-value=2e+02 Score=24.74 Aligned_cols=109 Identities=13% Similarity=0.054 Sum_probs=55.6
Q ss_pred eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcc---cccCccCCCCccc
Q 025492 68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSM---KYIPNYFEKGQLT 144 (252)
Q Consensus 68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~---~~l~~~~~~~s~d 144 (252)
.|+=||+|.-...+...-...+..|+.++.+++.++...+. +. ++. .++.. ....+.-....+|
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~----------g~-~~~--~~~~~~~~~~~~~~~~~~~~d 68 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNEN----------GL-RLE--DGEITVPVLAADDPAELGPQD 68 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHc----------CC-ccc--CCceeecccCCCChhHcCCCC
Confidence 36778988733322222222256788999876654433221 11 110 11100 0011110114678
Q ss_pred EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHH
Q 025492 145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCL 200 (252)
Q Consensus 145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~ 200 (252)
.|++..+... ....++.+...+.++..+++....-...+.+.+.+
T Consensus 69 ~vila~k~~~-----------~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~ 113 (304)
T PRK06522 69 LVILAVKAYQ-----------LPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYI 113 (304)
T ss_pred EEEEeccccc-----------HHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhc
Confidence 8888776432 23588888888888777777665433334444444
Done!