Your job contains 1 sequence.
>025493
MKYSFTDLYLLGLAKGSGMSKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMK
RELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGS
LDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQI
MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISP
KTCVYYTKWLDF
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 025493
(252 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2171671 - symbol:AT5G23710 species:3702 "Arabi... 547 8.0e-53 1
UNIPROTKB|J9P638 - symbol:POLR3F "Uncharacterized protein... 300 1.2e-26 1
UNIPROTKB|F1MYX7 - symbol:POLR3F "DNA-directed RNA polyme... 296 3.2e-26 1
UNIPROTKB|E2RG78 - symbol:POLR3F "Uncharacterized protein... 295 4.0e-26 1
UNIPROTKB|Q2T9S3 - symbol:POLR3F "DNA-directed RNA polyme... 294 5.2e-26 1
UNIPROTKB|Q9H1D9 - symbol:POLR3F "DNA-directed RNA polyme... 294 5.2e-26 1
MGI|MGI:1924086 - symbol:Polr3f "polymerase (RNA) III (DN... 292 8.4e-26 1
RGD|1306428 - symbol:Polr3f "polymerase (RNA) III (DNA di... 290 1.4e-25 1
UNIPROTKB|E1BU41 - symbol:POLR3F "Uncharacterized protein... 289 1.8e-25 1
UNIPROTKB|F1SBH4 - symbol:POLR3F "Uncharacterized protein... 289 1.8e-25 1
ZFIN|ZDB-GENE-040426-972 - symbol:polr3f "polymerase (RNA... 285 4.6e-25 1
ASPGD|ASPL0000037589 - symbol:AN9125 species:162425 "Emer... 188 9.8e-25 2
DICTYBASE|DDB_G0272022 - symbol:rpc34 "RNA polymerase III... 267 3.8e-23 1
FB|FBgn0038951 - symbol:CG5380 species:7227 "Drosophila m... 257 4.3e-22 1
POMBASE|SPCC290.02 - symbol:rpc34 "DNA-directed RNA polym... 209 5.3e-17 1
WB|WBGene00021112 - symbol:W09C3.4 species:6239 "Caenorha... 140 6.0e-16 3
CGD|CAL0000539 - symbol:orf19.5608 species:5476 "Candida ... 196 2.4e-15 1
GENEDB_PFALCIPARUM|PF14_0207 - symbol:PF14_0207 "RNA poly... 189 1.1e-14 1
UNIPROTKB|Q8ILN6 - symbol:PF14_0207 "RNA polymerase subun... 189 1.1e-14 1
SGD|S000005286 - symbol:RPC34 "RNA polymerase III subunit... 165 7.6e-12 2
UNIPROTKB|F1LW73 - symbol:F1LW73 "Uncharacterized protein... 92 0.00048 1
>TAIR|locus:2171671 [details] [associations]
symbol:AT5G23710 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0009507 "chloroplast" evidence=IDA]
InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763 EMBL:CP002688
GO:GO:0009507 GO:GO:0003677 GO:GO:0006351 EMBL:AB025633
GO:GO:0003899 KO:K03025 InterPro:IPR016049 PANTHER:PTHR12780
EMBL:BT010606 IPI:IPI00518437 RefSeq:NP_197760.1 UniGene:At.30994
ProteinModelPortal:Q9LSZ5 STRING:Q9LSZ5 PRIDE:Q9LSZ5
EnsemblPlants:AT5G23710.1 GeneID:832436 KEGG:ath:AT5G23710
TAIR:At5g23710 InParanoid:Q9LSZ5 OMA:FASTRIG PhylomeDB:Q9LSZ5
ProtClustDB:CLSN2686296 Genevestigator:Q9LSZ5 Uniprot:Q9LSZ5
Length = 230
Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
Identities = 111/237 (46%), Positives = 155/237 (65%)
Query: 19 MSKRKRPDSNAPSDSLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIK 77
MSKRKRPD + L + HE+ + D+IR N Q G ++KRE + P IVT+ I
Sbjct: 1 MSKRKRPDPKSSGGDLNEPHEKKLLDLIRIN-QGRGATMFELKREKTI--PATIVTRLIA 57
Query: 78 SLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQI 137
SL+ K+LIKEV N++NKG KH +A+EFEP +++GG WY++G+LD I+ +K++C+ +
Sbjct: 58 SLRKKNLIKEVANMNNKGVKHYLAMEFEPCSELTGGEWYTDGALDLSKIEDLKAKCVMIL 117
Query: 138 IK--LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIP 195
+ +V TLE + + VD TK EI++ ++LDN IMEVKSNG EF +
Sbjct: 118 ERHRQRVVTLEVLCGYFVKEEKLSVDQTK----EILKNLILDNLIMEVKSNGMNEFASTR 173
Query: 196 VGKVCYKNVSKXXXXXEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
+G+VCY+ K EP+ G+ AS+PCGVCP I C+PDGVISP TCVY+ KWLDF
Sbjct: 174 IGEVCYRLTGKKFGNGEPRAGAFASIPCGVCPHIAICSPDGVISPTTCVYFQKWLDF 230
>UNIPROTKB|J9P638 [details] [associations]
symbol:POLR3F "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 InterPro:IPR016049 PANTHER:PTHR12780
GeneTree:ENSGT00390000009679 OMA:SITGGAW EMBL:AAEX03013766
Ensembl:ENSCAFT00000043193 Uniprot:J9P638
Length = 323
Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 72/235 (30%), Positives = 123/235 (52%)
Query: 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKG 95
+ E+L+Y +I + + GIW+RD++ K NLP + K +K+L++K LIK V ++
Sbjct: 97 NQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASK 153
Query: 96 KKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKR 154
KK M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R
Sbjct: 154 KKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPMIQR 213
Query: 155 SGAF----------------KVDLTKQQIEEIVRAVVLDNQI-MEVKSNGSGEFTNIPVG 197
+ +F KV+L+ + IE I+ ++ D ++ M + + G ++
Sbjct: 214 NSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGH 273
Query: 198 KVCYKNVSKXXXXXEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
Y+ V+ P TG PCG+CP + C G ISP C+Y T+WL+F
Sbjct: 274 MKLYRAVNPII----PPTGL-VRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 323
>UNIPROTKB|F1MYX7 [details] [associations]
symbol:POLR3F "DNA-directed RNA polymerase III subunit
RPC6" species:9913 "Bos taurus" [GO:0045089 "positive regulation of
innate immune response" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR007832 Pfam:PF05158
PIRSF:PIRSF028763 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 IPI:IPI00699294 UniGene:Bt.27185
InterPro:IPR016049 PANTHER:PTHR12780 GeneTree:ENSGT00390000009679
OMA:SITGGAW EMBL:DAAA02035728 EMBL:DAAA02035725 EMBL:DAAA02035726
EMBL:DAAA02035727 Ensembl:ENSBTAT00000011619 Uniprot:F1MYX7
Length = 316
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 80/255 (31%), Positives = 129/255 (50%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTDH-ERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D+ E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 66 LRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 122
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 123 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 182
Query: 132 QCLKQI-IKLKVATLEGISDSIKRSGAFKV--DLTKQQIEEIVRAVVLDNQIMEVKSN-- 186
QC K + K + A + I+R+ +F ++ K E + V L + +E N
Sbjct: 183 QCFKFLQTKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTL 242
Query: 187 ---GSGEFTNIP-----VGKVC-YKNVSKXXXXXEPKTGSSASVPCGVCPQINFCTPDGV 237
G E T I VG V + + + P TG PCG+CP + C G
Sbjct: 243 IYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVSPIIPPTGL-VRAPCGLCPVFDDCHEGGE 301
Query: 238 ISPKTCVYYTKWLDF 252
ISP C+Y T+WL+F
Sbjct: 302 ISPSNCIYMTEWLEF 316
>UNIPROTKB|E2RG78 [details] [associations]
symbol:POLR3F "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 CTD:10621 KO:K03025 InterPro:IPR016049
PANTHER:PTHR12780 GeneTree:ENSGT00390000009679 EMBL:AAEX03013766
RefSeq:XP_857138.2 Ensembl:ENSCAFT00000008718 GeneID:477143
KEGG:cfa:477143 NextBio:20852675 Uniprot:E2RG78
Length = 316
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 80/255 (31%), Positives = 129/255 (50%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTDH-ERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D+ E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 66 LRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 122
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 123 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 182
Query: 132 QCLKQI-IKLKVATLEGISDSIKRSGAFKV--DLTKQQIEEIVRAVVLDNQIMEVKSN-- 186
QC K + K + A + I+R+ +F ++ K E + V L + +E N
Sbjct: 183 QCFKFLQTKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTL 242
Query: 187 ---GSGEFTNIP-----VGKVC-YKNVSKXXXXXEPKTGSSASVPCGVCPQINFCTPDGV 237
G E T I VG V + + + P TG PCG+CP + C G
Sbjct: 243 IYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPIIPPTGL-VRAPCGLCPVFDDCHEGGE 301
Query: 238 ISPKTCVYYTKWLDF 252
ISP C+Y T+WL+F
Sbjct: 302 ISPSNCIYMTEWLEF 316
>UNIPROTKB|Q2T9S3 [details] [associations]
symbol:POLR3F "DNA-directed RNA polymerase III subunit
RPC6" species:9913 "Bos taurus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0045089 "positive regulation of innate immune
response" evidence=ISS] [GO:0032728 "positive regulation of
interferon-beta production" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR007832
Pfam:PF05158 PIRSF:PIRSF028763 GO:GO:0005634 GO:GO:0003677
GO:GO:0045087 GO:GO:0006351 GO:GO:0051607 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 EMBL:BC111292 IPI:IPI00699294
RefSeq:NP_001033237.1 UniGene:Bt.27185 ProteinModelPortal:Q2T9S3
SMR:Q2T9S3 STRING:Q2T9S3 GeneID:529410 KEGG:bta:529410 CTD:10621
eggNOG:COG5111 HOGENOM:HOG000231688 HOVERGEN:HBG006817
InParanoid:Q2T9S3 KO:K03025 OrthoDB:EOG4VQ9PP NextBio:20875029
InterPro:IPR016049 PANTHER:PTHR12780 Uniprot:Q2T9S3
Length = 316
Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 80/255 (31%), Positives = 129/255 (50%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTDH-ERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D+ E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 66 LRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 122
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 123 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 182
Query: 132 QCLKQII-KLKVATLEGISDSIKRSGAFKV--DLTKQQIEEIVRAVVLDNQIMEVKSN-- 186
QC K + K + A + I+R+ +F ++ K E + V L + +E N
Sbjct: 183 QCFKFLQNKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTL 242
Query: 187 ---GSGEFTNIP-----VGKVC-YKNVSKXXXXXEPKTGSSASVPCGVCPQINFCTPDGV 237
G E T I VG V + + + P TG PCG+CP + C G
Sbjct: 243 IYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVSPIIPPTGL-VRAPCGLCPVFDDCHEGGE 301
Query: 238 ISPKTCVYYTKWLDF 252
ISP C+Y T+WL+F
Sbjct: 302 ISPSNCIYMTEWLEF 316
>UNIPROTKB|Q9H1D9 [details] [associations]
symbol:POLR3F "DNA-directed RNA polymerase III subunit
RPC6" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0045087 "innate immune response" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=NAS] [GO:0006359
"regulation of transcription from RNA polymerase III promoter"
evidence=NAS] [GO:0032728 "positive regulation of interferon-beta
production" evidence=IMP] [GO:0045089 "positive regulation of
innate immune response" evidence=IMP] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=NAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=TAS] [GO:0006385 "transcription elongation from
RNA polymerase III promoter" evidence=TAS] [GO:0006386 "termination
of RNA polymerase III transcription" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] Reactome:REACT_71 InterPro:IPR007832 Pfam:PF05158
PIRSF:PIRSF028763 EMBL:U93869 GO:GO:0003677 GO:GO:0045087
GO:GO:0051607 EMBL:CH471133 GO:GO:0045089 Reactome:REACT_1788
GO:GO:0006359 GO:GO:0005666 GO:GO:0003899 GO:GO:0032728
EMBL:AL121893 GO:GO:0006386 GO:GO:0006385 CTD:10621 eggNOG:COG5111
HOGENOM:HOG000231688 HOVERGEN:HBG006817 KO:K03025 OrthoDB:EOG4VQ9PP
InterPro:IPR016049 PANTHER:PTHR12780 OMA:SITGGAW EMBL:AK290892
EMBL:BC012588 IPI:IPI00100245 RefSeq:NP_006457.2 UniGene:Hs.472227
PDB:2DK5 PDB:2YU3 PDBsum:2DK5 PDBsum:2YU3 ProteinModelPortal:Q9H1D9
SMR:Q9H1D9 DIP:DIP-34646N IntAct:Q9H1D9 MINT:MINT-1377146
STRING:Q9H1D9 PhosphoSite:Q9H1D9 DMDM:20139728 PRIDE:Q9H1D9
DNASU:10621 Ensembl:ENST00000377603 GeneID:10621 KEGG:hsa:10621
UCSC:uc002wqv.3 GeneCards:GC20P018457 HGNC:HGNC:15763
neXtProt:NX_Q9H1D9 PharmGKB:PA33520 InParanoid:Q9H1D9
PhylomeDB:Q9H1D9 BindingDB:Q9H1D9 ChEMBL:CHEMBL2143
EvolutionaryTrace:Q9H1D9 GenomeRNAi:10621 NextBio:40356
ArrayExpress:Q9H1D9 Bgee:Q9H1D9 CleanEx:HS_POLR3F
Genevestigator:Q9H1D9 GermOnline:ENSG00000132664 Uniprot:Q9H1D9
Length = 316
Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 80/255 (31%), Positives = 129/255 (50%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTDH-ERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D+ E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 66 LRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 122
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 123 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 182
Query: 132 QCLKQI-IKLKVATLEGISDSIKRSGAFKV--DLTKQQIEEIVRAVVLDNQIMEVKSN-- 186
QC K + K + A + I+R+ +F ++ K E + V L + +E N
Sbjct: 183 QCFKFLQSKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTL 242
Query: 187 ---GSGEFTNIP-----VGKVC-YKNVSKXXXXXEPKTGSSASVPCGVCPQINFCTPDGV 237
G E T I VG V + + + P TG PCG+CP + C G
Sbjct: 243 IYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPIIPPTGL-VRAPCGLCPVFDDCHEGGE 301
Query: 238 ISPKTCVYYTKWLDF 252
ISP C+Y T+WL+F
Sbjct: 302 ISPSNCIYMTEWLEF 316
>MGI|MGI:1924086 [details] [associations]
symbol:Polr3f "polymerase (RNA) III (DNA directed)
polypeptide F" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0032728 "positive regulation of interferon-beta production"
evidence=ISO] [GO:0045087 "innate immune response" evidence=IEA]
[GO:0045089 "positive regulation of innate immune response"
evidence=ISO] [GO:0051607 "defense response to virus" evidence=IEA]
InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763 MGI:MGI:1924086
GO:GO:0005634 GO:GO:0003677 GO:GO:0045087 GO:GO:0006351
GO:GO:0051607 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728 CTD:10621
eggNOG:COG5111 HOGENOM:HOG000231688 HOVERGEN:HBG006817 KO:K03025
OrthoDB:EOG4VQ9PP InterPro:IPR016049 PANTHER:PTHR12780
GeneTree:ENSGT00390000009679 OMA:SITGGAW EMBL:AK036166
EMBL:AK076538 EMBL:AK144679 EMBL:BC009159 IPI:IPI00122358
RefSeq:NP_084039.2 UniGene:Mm.389351 PDB:2DK8 PDBsum:2DK8
ProteinModelPortal:Q921X6 SMR:Q921X6 STRING:Q921X6
PhosphoSite:Q921X6 PRIDE:Q921X6 Ensembl:ENSMUST00000028914
GeneID:70408 KEGG:mmu:70408 InParanoid:Q921X6
EvolutionaryTrace:Q921X6 NextBio:331553 Bgee:Q921X6
CleanEx:MM_POLR3F Genevestigator:Q921X6
GermOnline:ENSMUSG00000027427 Uniprot:Q921X6
Length = 316
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 80/255 (31%), Positives = 128/255 (50%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTDH-ERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D+ E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 66 LRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 122
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 123 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 182
Query: 132 QCLKQI-IKLKVATLEGISDSIKRSGAFKV--DLTKQQIEEIVRAVVLDNQIMEVKSN-- 186
QC K + K + A + I+R+ +F ++ K E + V L + +E N
Sbjct: 183 QCFKFLQSKAETARESKQNPVIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTL 242
Query: 187 ---GSGEFTNIP-----VGKVC-YKNVSKXXXXXEPKTGSSASVPCGVCPQINFCTPDGV 237
G E T I VG V + + + P TG PCG+CP C G
Sbjct: 243 IYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPILPPTGV-VRAPCGLCPVFEDCHEGGE 301
Query: 238 ISPKTCVYYTKWLDF 252
ISP C+Y T+WL+F
Sbjct: 302 ISPSNCIYMTEWLEF 316
>RGD|1306428 [details] [associations]
symbol:Polr3f "polymerase (RNA) III (DNA directed) polypeptide
F" species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032728 "positive regulation of interferon-beta
production" evidence=ISO] [GO:0045089 "positive regulation of
innate immune response" evidence=ISO] InterPro:IPR007832
Pfam:PF05158 PIRSF:PIRSF028763 RGD:1306428 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 EMBL:CH474026 CTD:10621 KO:K03025
OrthoDB:EOG4VQ9PP InterPro:IPR016049 PANTHER:PTHR12780
GeneTree:ENSGT00390000009679 IPI:IPI00195213 RefSeq:NP_001101254.1
UniGene:Rn.22329 Ensembl:ENSRNOT00000010468 GeneID:311487
KEGG:rno:311487 UCSC:RGD:1306428 NextBio:663707 Uniprot:D3ZQ56
Length = 371
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 79/255 (30%), Positives = 129/255 (50%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTDH-ERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D+ E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 121 LRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 177
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 178 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 237
Query: 132 QCLKQI-IKLKVATLEGISDSIKRSGAFKV--DLTKQQIEEIVRAVVLDNQIMEVKSN-- 186
QC K + K + A + I+R+ +F ++ K E + V L + +E N
Sbjct: 238 QCFKFLQSKAETARESKQNPVIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTL 297
Query: 187 ---GSGEFTNIP-----VGKVC-YKNVSKXXXXXEPKTGSSASVPCGVCPQINFCTPDGV 237
G + T I VG V + + + P TG PCG+CP + C G
Sbjct: 298 IYDGKVDMTIIAAKEGTVGSVDGHMKLYRAVNPILPPTGL-VRAPCGLCPVFDDCHEGGE 356
Query: 238 ISPKTCVYYTKWLDF 252
ISP C+Y T+WL+F
Sbjct: 357 ISPSNCIYMTEWLEF 371
>UNIPROTKB|E1BU41 [details] [associations]
symbol:POLR3F "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA] [GO:0045089
"positive regulation of innate immune response" evidence=IEA]
InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763 GO:GO:0003677
GO:GO:0006351 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728 CTD:10621
KO:K03025 InterPro:IPR016049 PANTHER:PTHR12780
GeneTree:ENSGT00390000009679 OMA:SITGGAW EMBL:AADN02041178
IPI:IPI00578749 RefSeq:NP_001186330.1 UniGene:Gga.5581
Ensembl:ENSGALT00000014238 GeneID:416723 KEGG:gga:416723
NextBio:20820145 Uniprot:E1BU41
Length = 314
Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 78/254 (30%), Positives = 127/254 (50%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTDH-ERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D+ E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 64 LRSNAGLLYRIKESQNASKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 120
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 121 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 180
Query: 132 QCLKQI-IKLKVATLEGISDSIKRSGAFKV--DLTKQQIEEIVRAVVLDNQIMEVKSN-- 186
QC K + K + A + I+R+ +F ++ K E + V L + +E N
Sbjct: 181 QCFKFLQSKAEAARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTL 240
Query: 187 ---GSGEFTNIPVGKVCYKNVS---KXXXXXEPKTGSSASV--PCGVCPQINFCTPDGVI 238
G E T I + +V K P + V PCG+CP + C G I
Sbjct: 241 IYDGKVEMTIIAAKEGTVGSVDGQMKLYRAVSPLIQPTGLVRTPCGLCPVFDDCHEGGEI 300
Query: 239 SPKTCVYYTKWLDF 252
SP C+Y T+WL+F
Sbjct: 301 SPSNCIYMTEWLEF 314
>UNIPROTKB|F1SBH4 [details] [associations]
symbol:POLR3F "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045089 "positive regulation of innate immune response"
evidence=IEA] [GO:0032728 "positive regulation of interferon-beta
production" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763
GO:GO:0003677 GO:GO:0006351 GO:GO:0045089 GO:GO:0003899
GO:GO:0032728 CTD:10621 KO:K03025 InterPro:IPR016049
PANTHER:PTHR12780 GeneTree:ENSGT00390000009679 OMA:SITGGAW
EMBL:CU914246 RefSeq:XP_003483946.1 Ensembl:ENSSSCT00000007767
GeneID:100738796 KEGG:ssc:100738796 Uniprot:F1SBH4
Length = 316
Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 78/254 (30%), Positives = 127/254 (50%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTDH-ERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D+ E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 66 LRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 122
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 123 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 182
Query: 132 QCLKQI-IKLKVATLEGISDSIKRSGAFKV--DLTKQQIEEIVRAVVLDNQIMEVKSN-- 186
QC K + K + A + I+R+ +F ++ K E + V L + +E N
Sbjct: 183 QCFKFLQTKAETARESKQNPVIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTL 242
Query: 187 ---GSGEFTNIPVGKVCYKNVS---KXXXXXEPKTGSSASV--PCGVCPQINFCTPDGVI 238
G E T I + +V K P + V PCG+CP + C G I
Sbjct: 243 IYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPIISPTGLVRAPCGLCPVFDDCHEGGEI 302
Query: 239 SPKTCVYYTKWLDF 252
SP C+Y T+WL+F
Sbjct: 303 SPSNCIYMTEWLEF 316
>ZFIN|ZDB-GENE-040426-972 [details] [associations]
symbol:polr3f "polymerase (RNA) III (DNA directed)
polypeptide F" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0060041 "retina development in camera-type eye"
evidence=IMP] InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763
ZFIN:ZDB-GENE-040426-972 GO:GO:0003677 GO:GO:0006351 GO:GO:0060041
GO:GO:0003899 CTD:10621 HOVERGEN:HBG006817 KO:K03025
InterPro:IPR016049 PANTHER:PTHR12780 EMBL:BC051782 IPI:IPI00483706
RefSeq:NP_957481.1 UniGene:Dr.24983 ProteinModelPortal:Q7ZTZ0
SMR:Q7ZTZ0 STRING:Q7ZTZ0 GeneID:394162 KEGG:dre:394162
InParanoid:Q7ZTZ0 NextBio:20815110 ArrayExpress:Q7ZTZ0
Uniprot:Q7ZTZ0
Length = 314
Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 79/256 (30%), Positives = 125/256 (48%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTDH-ERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L SG+ R + +A +D+ E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 64 LRNSSGLLYRLKDTQSASKVKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 120
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++ +
Sbjct: 121 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEALNQ 180
Query: 132 QCLKQIIKLKVATLEGISDS--IKRSGAFKV--DLTKQQIEEIVRAVVLDNQIMEVKSN- 186
QC K ++ K T S ++R+ +F ++ K E + V L + +E N
Sbjct: 181 QCFK-FLQSKAETARDSKQSPMVQRNSSFATSHEVWKYICELGISKVDLSMEDIETILNT 239
Query: 187 ----GSGEFTNIPVGKVCYKNVS---KXXXXXEP---KTGSSASVPCGVCPQINFCTPDG 236
G E T I + +V K P TG PCG+CP + C G
Sbjct: 240 LIFDGKVEMTIIAAKEGTVGSVDGQMKLYRGVNPIIQPTGL-VKTPCGLCPVFDDCHEGG 298
Query: 237 VISPKTCVYYTKWLDF 252
ISP CVY +WLDF
Sbjct: 299 EISPSNCVYMAEWLDF 314
>ASPGD|ASPL0000037589 [details] [associations]
symbol:AN9125 species:162425 "Emericella nidulans"
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763 GO:GO:0003677
EMBL:BN001306 GO:GO:0006351 GO:GO:0003899 EMBL:AACD01000169
eggNOG:COG5111 KO:K03025 InterPro:IPR016049 PANTHER:PTHR12780
HOGENOM:HOG000186563 OrthoDB:EOG4WQ4BZ RefSeq:XP_682394.1
ProteinModelPortal:Q5ARF5 STRING:Q5ARF5
EnsemblFungi:CADANIAT00009485 GeneID:2868020 KEGG:ani:AN9125.2
OMA:IDECSPE Uniprot:Q5ARF5
Length = 359
Score = 188 (71.2 bits), Expect = 9.8e-25, Sum P(2) = 9.8e-25
Identities = 46/129 (35%), Positives = 73/129 (56%)
Query: 4 SFTDLYLLGLAKGSG--MSKRKRPDSNAPS-DSLTDHERLIYDVIRSNKQDMGIWTRDMK 60
S D LL L +G ++ + P +A +L+ E L+Y+VI S + GIW R ++
Sbjct: 57 SLVDQKLLRLLQGKNDRLAWKLIPREDAEKLQNLSPDESLVYNVIHSTGRS-GIWVRAIQ 115
Query: 61 RELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGS 120
+ NL +I+ + +KSL+ K+ IK V N+ +K M PS+D++GGAW+++G
Sbjct: 116 N--RTNLHKSILDRCLKSLEGKNYIKSVHNVKFPSRKMYMLAGLAPSEDVTGGAWFTDGV 173
Query: 121 LDTEFIKVV 129
LD FI VV
Sbjct: 174 LDENFIGVV 182
Score = 118 (46.6 bits), Expect = 9.8e-25, Sum P(2) = 9.8e-25
Identities = 26/112 (23%), Positives = 52/112 (46%)
Query: 144 TLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGS--GEFTNIPVGKVCY 201
T+ ++ ++ +SG V L ++ + +++ + DN+++ + +NG N K
Sbjct: 241 TIAMLTAAVNQSGITPVRLGEESVTQLLEMLCYDNKLVAL-NNGEYYKSLKNPEEVKARQ 299
Query: 202 -KNVSKXXXXXEPKT--GSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
+ + + + VPCG CP N C P G +SP+ C Y+ W+
Sbjct: 300 ARKPDEELAAADDRLVRNGMTEVPCGNCPVFNLCVPGGAVSPENCEYFETWI 351
>DICTYBASE|DDB_G0272022 [details] [associations]
symbol:rpc34 "RNA polymerase III subunit"
species:44689 "Dictyostelium discoideum" [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763
dictyBase:DDB_G0272022 GO:GO:0003677 GenomeReviews:CM000151_GR
EMBL:AAFI02000007 GO:GO:0006383 GO:GO:0005666 GO:GO:0003899
eggNOG:COG5111 KO:K03025 InterPro:IPR016049 PANTHER:PTHR12780
OMA:SITGGAW RefSeq:XP_645385.1 ProteinModelPortal:Q86JM3
STRING:Q86JM3 PRIDE:Q86JM3 EnsemblProtists:DDB0216315
GeneID:8618274 KEGG:ddi:DDB_G0272022 ProtClustDB:CLSZ2729252
Uniprot:Q86JM3
Length = 293
Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 69/234 (29%), Positives = 118/234 (50%)
Query: 21 KRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQ 80
K P+ A L + LIY +I ++ + G WTR++K +TK +K+L+
Sbjct: 62 KEVNPEDQAKFRGLGVEDFLIYQLIEASS-NTGAWTRELKNSSGYQQVQ--ITKILKTLE 118
Query: 81 NKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKL 140
++ LIK V +I + KK M EPS++I+GG YS+ S D ++I+++K +K +
Sbjct: 119 SRKLIKSVKSIQSGRKKVYMLYNMEPSREITGGQLYSDQSYDHQYIQIMKMH-IKTFVDN 177
Query: 141 KVAT-LEGISDSIKRSG--AFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVG 197
K A L I +++ A L + I+ +V V+ D I E++ G G
Sbjct: 178 KGAVDLADIITYLRKVAEEATSQSLGPEDIQALVNTVIYDGDIEEMRDTRMGAMLGRRSG 237
Query: 198 KVCYKNVSKXXXXXEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLD 251
+ YK P + ++PCG CP + C+ +G++SPK CVY+ ++L+
Sbjct: 238 -ILYKPTKTPI----P-VNNFCNMPCGNCPVFDICSDNGLVSPKRCVYFKQYLE 285
>FB|FBgn0038951 [details] [associations]
symbol:CG5380 species:7227 "Drosophila melanogaster"
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS;NAS] [GO:0005666 "DNA-directed RNA polymerase III
complex" evidence=ISS] [GO:0006383 "transcription from RNA
polymerase III promoter" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR007832 Pfam:PF05158
PIRSF:PIRSF028763 EMBL:AE014297 GO:GO:0005634 GO:GO:0022008
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 eggNOG:COG5111 KO:K03025
InterPro:IPR016049 PANTHER:PTHR12780 GeneTree:ENSGT00390000009679
OMA:SITGGAW EMBL:AY119241 RefSeq:NP_001247237.1 RefSeq:NP_651029.1
UniGene:Dm.13730 UniGene:Dm.38066 ProteinModelPortal:Q9VD25
SMR:Q9VD25 DIP:DIP-17810N IntAct:Q9VD25 MINT:MINT-299125
STRING:Q9VD25 PRIDE:Q9VD25 EnsemblMetazoa:FBtr0084236
EnsemblMetazoa:FBtr0305320 GeneID:42619 KEGG:dme:Dmel_CG5380
UCSC:CG5380-RA FlyBase:FBgn0038951 InParanoid:Q9VD25
OrthoDB:EOG4W3R3R PhylomeDB:Q9VD25 GenomeRNAi:42619 NextBio:829724
Bgee:Q9VD25 GermOnline:CG5380 Uniprot:Q9VD25
Length = 293
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 71/251 (28%), Positives = 124/251 (49%)
Query: 13 LAKGSGMSKR-KRPDSNA--PSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPD 69
L KG + R K P+ + P D+ + E+++Y ++ + GIW RD++ + +N+
Sbjct: 53 LKKGEKLVYRAKDPEKKSALPKDA-DNEEKVVYGIVEEGG-NKGIWIRDIRMKSNLNMIQ 110
Query: 70 NIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVV 129
+ K +K+L+ K LIK V +++ KK M EP I+GGAWY + + EF+ V+
Sbjct: 111 --LNKILKNLETKKLIKAVKSVNASKKKVYMLYNLEPDLSITGGAWYQDQDFEVEFVDVL 168
Query: 130 KSQCLKQIIKLKVATLEGISD---SIKRSGAFKVDLTKQQIEEIVRAVV------LDNQI 180
QCL+ +++K + E + + K+ V+ ++ I ++ + V L+ +
Sbjct: 169 NQQCLR-FLQMKRDSAEKKREGPLAFKQMSCCTVNEVQKFISDLGISKVNLAEADLETIL 227
Query: 181 MEVKSNGSGEFTNIPVGKVCYKNVSKXXXXXEPKTGSSASVPCGVCPQINFCTPDGVISP 240
V +G+ E G Y+ V+ P TG +PCG+CP I C+ G ++
Sbjct: 228 KTVVYDGNAERVRQQDGSFVYRAVNAPL----PPTGL-VQMPCGICPVIKNCSNCGDVTA 282
Query: 241 KTCVYYTKWLD 251
TC Y WLD
Sbjct: 283 ITCEYMRDWLD 293
>POMBASE|SPCC290.02 [details] [associations]
symbol:rpc34 "DNA-directed RNA polymerase III complex
subunit Rpc34 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISO]
InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763
PomBase:SPCC290.02 GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003677 GO:GO:0006383 GO:GO:0005666
GO:GO:0003899 eggNOG:COG5111 KO:K03025 InterPro:IPR016049
PANTHER:PTHR12780 OMA:SITGGAW EMBL:DQ156223 PIR:T41266
RefSeq:NP_588398.1 ProteinModelPortal:O94553 STRING:O94553
EnsemblFungi:SPCC290.02.1 GeneID:2538992 KEGG:spo:SPCC290.02
HOGENOM:HOG000186563 OrthoDB:EOG4WQ4BZ NextBio:20800167
Uniprot:O94553
Length = 301
Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 65/260 (25%), Positives = 124/260 (47%)
Query: 13 LAKGSGMSKRK-RPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ + R R D ++ E+++Y I+ N + GIW + + L+ NL ++
Sbjct: 61 LRQGNVLVYRAVRLDEAKTVSTMEGDEQIVYSFIK-NSGNEGIWRKTLT--LRTNLHVSV 117
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
V + +KSL++K+L+K + ++ N +K M + PS +++GG W+++ LD EFI+ +K
Sbjct: 118 VDRCLKSLESKNLVKSIKSVKNPTRKIYMLYDLVPSTELTGGPWFTDQELDVEFIENLKK 177
Query: 132 QCLKQI----IKLKVATL----------EG------ISDSIKRSGAFKVDLTKQQIEEIV 171
+ + K A + G I + ++ + KVDL+ + +V
Sbjct: 178 VIYRYVHSKSFPPKKAAMGPDLVWGPEYNGYPTALQIHNWLRSTNITKVDLSLANVISLV 237
Query: 172 RAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKXXXXXEPKTGSSASVPCGVCPQINF 231
++ D ++ E +S+G+ Y+ + + T S PCG CP +
Sbjct: 238 DVLIYDGKV-EKRSDGAS-----------YRAIRVNNENIDAFTES----PCGNCPVSDI 281
Query: 232 CTPDGVISPKTCVYYTKWLD 251
C + ++P TC Y KWL+
Sbjct: 282 CDANSRVNPITCEYLDKWLN 301
>WB|WBGene00021112 [details] [associations]
symbol:W09C3.4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763
GO:GO:0005634 GO:GO:0003677 GO:GO:0000003 GO:GO:0006351
GO:GO:0003899 eggNOG:COG5111 HOGENOM:HOG000231688 KO:K03025
InterPro:IPR016049 PANTHER:PTHR12780 EMBL:FO080504 PIR:T34460
RefSeq:NP_491427.1 ProteinModelPortal:P91529 SMR:P91529
STRING:P91529 PaxDb:P91529 EnsemblMetazoa:W09C3.4 GeneID:172081
KEGG:cel:CELE_W09C3.4 UCSC:W09C3.4 CTD:172081 WormBase:W09C3.4
GeneTree:ENSGT00390000009679 InParanoid:P91529 OMA:SITGGAW
NextBio:873937 Uniprot:P91529
Length = 296
Score = 140 (54.3 bits), Expect = 6.0e-16, Sum P(3) = 6.0e-16
Identities = 31/99 (31%), Positives = 56/99 (56%)
Query: 35 TDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNK 94
T+ E++IY +I +K GIW ++++ +N + K++KSL+ K LIK + +
Sbjct: 82 TEEEQVIYSLIEESKT-RGIWIKELREGSGLNQLQ--LRKTLKSLETKKLIKTIKAVGTT 138
Query: 95 GKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQC 133
K +++ EP ++GG +YS+ LD+E I + S C
Sbjct: 139 RKCYIL-FSIEPDMSLTGGTFYSDQQLDSELINTLISVC 176
Score = 100 (40.3 bits), Expect = 6.0e-16, Sum P(3) = 6.0e-16
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 213 PKTGSS--ASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
P++ S SVPC +CP + C P VISP++C Y WL
Sbjct: 254 PRSSISPLVSVPCAICPVVEDCRPGYVISPQSCDYMKNWL 293
Score = 44 (20.5 bits), Expect = 6.0e-16, Sum P(3) = 6.0e-16
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 148 ISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNG 187
I+ I V L+ + +E I+ VLD I E +++G
Sbjct: 209 IAQFITEKRVLNVPLSLEDLERILEVAVLDGTI-ERRADG 247
>CGD|CAL0000539 [details] [associations]
symbol:orf19.5608 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0042797 "tRNA transcription from RNA polymerase
III promoter" evidence=IEA] InterPro:IPR007832 Pfam:PF05158
PIRSF:PIRSF028763 CGD:CAL0000539 GO:GO:0003677 GO:GO:0006351
EMBL:AACQ01000034 EMBL:AACQ01000033 GO:GO:0003899 eggNOG:COG5111
KO:K03025 InterPro:IPR016049 PANTHER:PTHR12780 RefSeq:XP_719169.1
RefSeq:XP_719283.1 ProteinModelPortal:Q5ABU2 STRING:Q5ABU2
GeneID:3639054 GeneID:3639178 KEGG:cal:CaO19.13051
KEGG:cal:CaO19.5608 Uniprot:Q5ABU2
Length = 330
Score = 196 (74.1 bits), Expect = 2.4e-15, P = 2.4e-15
Identities = 38/106 (35%), Positives = 66/106 (62%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
S++D E +IY I ++ ++ GIWT+ +K K NL +IV K +K+L+N IK + ++
Sbjct: 80 SMSDDEAMIYSYIEASGRE-GIWTKTIKA--KTNLHQHIVQKCLKNLENNRYIKSIKSVK 136
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQII 138
+ +K M +PS D++GG W+++ LDTEFI+ + C + I+
Sbjct: 137 HPTRKIYMLYNLQPSIDVTGGPWFTDSELDTEFIETLLEVCWRFIV 182
>GENEDB_PFALCIPARUM|PF14_0207 [details] [associations]
symbol:PF14_0207 "RNA polymerase subunit,
putative" species:5833 "Plasmodium falciparum" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 EMBL:AE014187 GO:GO:0003899 KO:K03025
InterPro:IPR016049 PANTHER:PTHR12780 RefSeq:XP_001348381.2
ProteinModelPortal:Q8ILN6 PRIDE:Q8ILN6
EnsemblProtists:PF14_0207:mRNA GeneID:811789 KEGG:pfa:PF14_0207
EuPathDB:PlasmoDB:PF3D7_1421400 HOGENOM:HOG000281293
ProtClustDB:CLSZ2432693 Uniprot:Q8ILN6
Length = 311
Score = 189 (71.6 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 55/221 (24%), Positives = 105/221 (47%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
L+D + LI+ + N Q+ GIWT D++++ K+ + V K +K L LIK+V NIH
Sbjct: 83 LSDIDFLIFTKVE-NSQNNGIWTADLRKQTKLLIHQ--VQKGVKLLCENKLIKQVNNIHV 139
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIK 153
K +K + + E S+ + GG++Y++G + + + ++ + +++ + + IK
Sbjct: 140 KNRKMYILYDLEASEKVIGGSFYTDGEFNKKVVDYIRENICFYLYNNNNSSVPSVINYIK 199
Query: 154 RSGAFKVD-LTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKXXXXXE 212
+ VD ++ I +++ + + +I KSN E + Y N K
Sbjct: 200 KLNN-SVDYFSENDIYRVIKTLSYEERINIYKSNNDEEL-------IYYYNNEKKNFLY- 250
Query: 213 PKTGSSASVPCGVCPQINFCTPD--GVISPKTCVYYTKWLD 251
+ PC C N C D I+P++C+Y +L+
Sbjct: 251 -------NFPCFSCNLFNKCNSDINTTINPRSCMYLNFYLN 284
>UNIPROTKB|Q8ILN6 [details] [associations]
symbol:PF14_0207 "RNA polymerase subunit, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=ISS] InterPro:IPR007832
Pfam:PF05158 PIRSF:PIRSF028763 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 EMBL:AE014187 GO:GO:0003899 KO:K03025
InterPro:IPR016049 PANTHER:PTHR12780 RefSeq:XP_001348381.2
ProteinModelPortal:Q8ILN6 PRIDE:Q8ILN6
EnsemblProtists:PF14_0207:mRNA GeneID:811789 KEGG:pfa:PF14_0207
EuPathDB:PlasmoDB:PF3D7_1421400 HOGENOM:HOG000281293
ProtClustDB:CLSZ2432693 Uniprot:Q8ILN6
Length = 311
Score = 189 (71.6 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 55/221 (24%), Positives = 105/221 (47%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
L+D + LI+ + N Q+ GIWT D++++ K+ + V K +K L LIK+V NIH
Sbjct: 83 LSDIDFLIFTKVE-NSQNNGIWTADLRKQTKLLIHQ--VQKGVKLLCENKLIKQVNNIHV 139
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIK 153
K +K + + E S+ + GG++Y++G + + + ++ + +++ + + IK
Sbjct: 140 KNRKMYILYDLEASEKVIGGSFYTDGEFNKKVVDYIRENICFYLYNNNNSSVPSVINYIK 199
Query: 154 RSGAFKVD-LTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKXXXXXE 212
+ VD ++ I +++ + + +I KSN E + Y N K
Sbjct: 200 KLNN-SVDYFSENDIYRVIKTLSYEERINIYKSNNDEEL-------IYYYNNEKKNFLY- 250
Query: 213 PKTGSSASVPCGVCPQINFCTPD--GVISPKTCVYYTKWLD 251
+ PC C N C D I+P++C+Y +L+
Sbjct: 251 -------NFPCFSCNLFNKCNSDINTTINPRSCMYLNFYLN 284
>SGD|S000005286 [details] [associations]
symbol:RPC34 "RNA polymerase III subunit C34" species:4932
"Saccharomyces cerevisiae" [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IDA;IMP] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IPI] InterPro:IPR007832 Pfam:PF05158
PIRSF:PIRSF028763 SGD:S000005286 GO:GO:0005739 GO:GO:0003677
EMBL:BK006947 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:X77395
EMBL:X63746 GO:GO:0005666 GO:GO:0003899 Reactome:REACT_83470
Reactome:REACT_87991 GO:GO:0042797 eggNOG:COG5111 KO:K03025
InterPro:IPR016049 PANTHER:PTHR12780 GeneTree:ENSGT00390000009679
HOGENOM:HOG000186563 OrthoDB:EOG4WQ4BZ EMBL:Z71618 PIR:A45107
RefSeq:NP_014400.1 ProteinModelPortal:P32910 SMR:P32910
DIP:DIP-202N IntAct:P32910 MINT:MINT-567632 STRING:P32910
PaxDb:P32910 PeptideAtlas:P32910 EnsemblFungi:YNR003C GeneID:855737
KEGG:sce:YNR003C CYGD:YNR003c OMA:WFTDSEL NextBio:980127
Genevestigator:P32910 GermOnline:YNR003C Uniprot:P32910
Length = 317
Score = 165 (63.1 bits), Expect = 7.6e-12, Sum P(2) = 7.6e-12
Identities = 32/94 (34%), Positives = 59/94 (62%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+++ E L+Y I ++ ++ GIW++ +K + NL ++V K +KSL+++ +K V ++
Sbjct: 85 TMSAEEALVYSYIEASGRE-GIWSKTIKA--RTNLHQHVVLKCLKSLESQRYVKSVKSVK 141
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
+K M +PS DI+GG W+++G LD EFI
Sbjct: 142 FPTRKIYMLYSLQPSVDITGGPWFTDGELDIEFI 175
Score = 42 (19.8 bits), Expect = 7.6e-12, Sum P(2) = 7.6e-12
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 143 ATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEV 183
+T + I + I + V+LT I + +V D+++ +V
Sbjct: 216 STTQEILEFITAAQVANVELTPSNIRSLCEVLVYDDKLEKV 256
>UNIPROTKB|F1LW73 [details] [associations]
symbol:F1LW73 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR007832 Pfam:PF05158 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 InterPro:IPR016049 PANTHER:PTHR12780
GeneTree:ENSGT00390000009679 IPI:IPI00776972
Ensembl:ENSRNOT00000058847 Uniprot:F1LW73
Length = 123
Score = 92 (37.4 bits), Expect = 0.00048, P = 0.00048
Identities = 32/136 (23%), Positives = 58/136 (42%)
Query: 122 DTEFIKVVKSQCLKQIIKLKVATLEGISDSIK-----RSGAFKVDLTKQQIEEIVRAVVL 176
++EF+ ++ QC K +++K T E ++ ++ G V+L+ + IE I ++
Sbjct: 3 ESEFVYMLNQQCFK-FLQMKRET-ESLASPLEVWKYCELGISTVELSLEDIETISDTLIY 60
Query: 177 DNQIMEVKSNGSGEFTNIPVGKVCYKNVSKXXXXXEPKTGSSASVPCGVCPQINFCTPDG 236
D ++ E I + Y V +P PCG+ P + C
Sbjct: 61 DGKV---------EIILIAMK---YGTVGSVDGPMKPYRTGLVQAPCGLFP-FDVCHEGS 107
Query: 237 VISPKTCVYYTKWLDF 252
+SP C+ T WL+F
Sbjct: 108 KLSPSNCICMTWWLEF 123
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.133 0.384 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 252 247 0.00078 114 3 11 22 0.48 33
32 0.46 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 21
No. of states in DFA: 603 (64 KB)
Total size of DFA: 190 KB (2109 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.88u 0.10s 23.98t Elapsed: 00:00:01
Total cpu time: 23.88u 0.10s 23.98t Elapsed: 00:00:01
Start: Fri May 10 11:13:26 2013 End: Fri May 10 11:13:27 2013