BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025493
(252 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255536881|ref|XP_002509507.1| DNA-directed RNA polymerase III subunit F, putative [Ricinus
communis]
gi|223549406|gb|EEF50894.1| DNA-directed RNA polymerase III subunit F, putative [Ricinus
communis]
Length = 236
Score = 348 bits (892), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 164/232 (70%), Positives = 199/232 (85%), Gaps = 3/232 (1%)
Query: 21 KRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQ 80
KRK+P+S++P+ SLT+HE +Y+VI S KQDMGIWTRDMKRE NLPDN+V KS+K LQ
Sbjct: 8 KRKQPESSSPAQSLTEHECTLYNVIWS-KQDMGIWTRDMKRE--TNLPDNVVNKSLKVLQ 64
Query: 81 NKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKL 140
K+LIKEVVNI NKG+KH MA EFEPSK+I+GGAWY EG+LDTEFIK++K C KQ++KL
Sbjct: 65 AKNLIKEVVNIQNKGRKHYMATEFEPSKEITGGAWYVEGNLDTEFIKLLKEVCTKQVLKL 124
Query: 141 KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVC 200
KVATLEGI+DSIKRSG F +LTKQQIEEIV+A+VLDN ++EVKSNG EF+ IP+GKVC
Sbjct: 125 KVATLEGITDSIKRSGIFNTELTKQQIEEIVKALVLDNALIEVKSNGMLEFSFIPIGKVC 184
Query: 201 YKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
YK V KG GEP+ G+ AS+PCGVCP+I+ CTPDG+ISP+TCVYY+KWLDF
Sbjct: 185 YKCVGKGSTAGEPRIGAMASIPCGVCPRISQCTPDGIISPQTCVYYSKWLDF 236
>gi|224142730|ref|XP_002324707.1| predicted protein [Populus trichocarpa]
gi|222866141|gb|EEF03272.1| predicted protein [Populus trichocarpa]
Length = 239
Score = 344 bits (882), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 165/238 (69%), Positives = 196/238 (82%), Gaps = 3/238 (1%)
Query: 15 KGSGMSKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTK 74
+G KRKRP+ N+P+ SLT+HERL+YDVIRS KQD+GIWTRDMK+E K LPDN+V K
Sbjct: 5 QGPSSLKRKRPEVNSPAQSLTEHERLLYDVIRS-KQDIGIWTRDMKKEAK--LPDNVVNK 61
Query: 75 SIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCL 134
S+K+LQ K LIKEVVNI NKG+KH MA EFEPSK+ISGGAWY EGSLDTEFI+ +K C
Sbjct: 62 SLKALQVKKLIKEVVNIQNKGRKHFMATEFEPSKEISGGAWYLEGSLDTEFIESLKQLCK 121
Query: 135 KQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNI 194
+QI + VATLE ++DSI AF VD+TKQQIEEI+R ++LDN IMEVKSNG GEF +I
Sbjct: 122 RQIERRGVATLEEVTDSINSYPAFNVDVTKQQIEEILRTLILDNVIMEVKSNGMGEFASI 181
Query: 195 PVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
P G+VCYK +SK G GGEPK G+ AS+PCGVCP+I+ CTPDG+ISPKTCVYY KWLDF
Sbjct: 182 PFGEVCYKYISKVGLGGEPKAGALASIPCGVCPRISQCTPDGIISPKTCVYYQKWLDF 239
>gi|224052869|ref|XP_002297621.1| predicted protein [Populus trichocarpa]
gi|222844879|gb|EEE82426.1| predicted protein [Populus trichocarpa]
Length = 239
Score = 343 bits (880), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 163/238 (68%), Positives = 196/238 (82%), Gaps = 3/238 (1%)
Query: 15 KGSGMSKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTK 74
+G KRKRP+ N+P SLT+HER++YDVIRS KQD+GIWTRDMK+E K LPDN+V K
Sbjct: 5 QGPSSLKRKRPELNSPVQSLTEHERILYDVIRS-KQDIGIWTRDMKKEAK--LPDNVVNK 61
Query: 75 SIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCL 134
S+K+L+ K+LIKEVVNI NKG+KH MA EFEPSK+ISGGAWY EGSLDTEFI+ ++ C
Sbjct: 62 SLKALRVKNLIKEVVNIQNKGRKHFMATEFEPSKEISGGAWYLEGSLDTEFIESLRQLCK 121
Query: 135 KQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNI 194
+QI K VATLE ++DSI AF VD+TKQQIEEI+R ++LDN IMEVKSNG GEF +I
Sbjct: 122 RQIEKKGVATLEEVTDSINSYPAFNVDVTKQQIEEILRTLILDNAIMEVKSNGMGEFASI 181
Query: 195 PVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
P GKVCY+ +SKG GGEPK G+ AS+PCGVCP+I+ CTPDG+ISPKTCVYY KWLDF
Sbjct: 182 PFGKVCYRYISKGALGGEPKAGALASIPCGVCPRISHCTPDGIISPKTCVYYQKWLDF 239
>gi|317106726|dbj|BAJ53222.1| JHL06P13.1 [Jatropha curcas]
Length = 235
Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 154/232 (66%), Positives = 191/232 (82%), Gaps = 4/232 (1%)
Query: 21 KRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQ 80
KRK+P+SN+ + SLT+HE+ +Y+ IRS KQDMGIWTRDMKRE NLPD +V KS+K LQ
Sbjct: 8 KRKQPESNSSAQSLTEHEQALYNAIRS-KQDMGIWTRDMKRE--TNLPDTVVNKSLKVLQ 64
Query: 81 NKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKL 140
K+LIKEVVNI NKG+K+ MA EFEPSK+I+GG WY EG+LDT FI V+K QC KQI KL
Sbjct: 65 AKNLIKEVVNIQNKGRKYYMATEFEPSKEITGGTWYVEGNLDTMFIGVLKDQCKKQIEKL 124
Query: 141 KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVC 200
KVAT+E ++D I R+G V LTKQQIEEI++A+VLDN++ EVKSNG GEF +IPVGKVC
Sbjct: 125 KVATVEAVTDFINRTGVSTVHLTKQQIEEILKALVLDNKVTEVKSNGMGEFASIPVGKVC 184
Query: 201 YKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
YK++ K G G+PK G+ AS+PCGVCP+I CTP+G+ISP+TCVYY KWL+F
Sbjct: 185 YKSIGK-GSSGDPKIGAMASIPCGVCPRIKHCTPNGIISPQTCVYYGKWLEF 235
>gi|225442989|ref|XP_002266428.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Vitis
vinifera]
Length = 239
Score = 322 bits (826), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 157/242 (64%), Positives = 200/242 (82%), Gaps = 5/242 (2%)
Query: 13 LAKGSGMS-KRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
+++ G+S KRKRPD+NA S L D ER++YD+IRS K+DMGIWTRDMKRE NLPDN+
Sbjct: 1 MSRSQGLSLKRKRPDTNAASQPLLDAERVLYDLIRS-KEDMGIWTRDMKRE--TNLPDNV 57
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
VTKS+K+LQ K LIKEVVNI +KG+KH MAVEFEPSK+++GGAWY EG+LDTE+IK++K
Sbjct: 58 VTKSLKALQVKKLIKEVVNIQSKGRKHYMAVEFEPSKELTGGAWYVEGNLDTEYIKILKE 117
Query: 132 QCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEF 191
C+K + KLKVAT EGIS+SI ++G + + QQI EI+RA+VLDN+IMEV+S+GSGEF
Sbjct: 118 TCVKVLSKLKVATAEGISESINKTGLCATECSTQQIAEILRALVLDNEIMEVRSSGSGEF 177
Query: 192 TNIPVGKVCYKNVSK-GGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
++IP+G VCY+ +K G GGG PK G+ AS+PCGVCP+I CTPDG+ISPK+C YY KWL
Sbjct: 178 SSIPIGAVCYRCTNKGGLGGGGPKIGAMASIPCGVCPRITQCTPDGIISPKSCAYYAKWL 237
Query: 251 DF 252
DF
Sbjct: 238 DF 239
>gi|296087021|emb|CBI33284.3| unnamed protein product [Vitis vinifera]
Length = 300
Score = 322 bits (824), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 157/243 (64%), Positives = 199/243 (81%), Gaps = 5/243 (2%)
Query: 12 GLAKGSGMS-KRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDN 70
G+++ G S KRKRPD+N S L D ER++YD+IRS K+DMGIWTRDMKRE NLPDN
Sbjct: 61 GMSRSQGSSLKRKRPDTNTASQPLLDAERVLYDLIRS-KEDMGIWTRDMKRE--TNLPDN 117
Query: 71 IVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVK 130
+VTKS+K+LQ K LIKEVVNI +KG+KH MAVEFEPSK+++GGAWY EG+LDTE+IK++K
Sbjct: 118 VVTKSLKALQVKKLIKEVVNIQSKGRKHYMAVEFEPSKELTGGAWYVEGNLDTEYIKILK 177
Query: 131 SQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGE 190
C++ + KLKVAT EGIS+SI ++G + + QQI EI+RA+VLDN+IMEV+S+GSGE
Sbjct: 178 KTCVRVLSKLKVATAEGISESINKTGLCATECSTQQIAEILRALVLDNEIMEVRSSGSGE 237
Query: 191 FTNIPVGKVCYKNVSK-GGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKW 249
F++IP+G VCY+ +K G GGG P G+ AS+PCGVCP+I CTPDG+ISPKTC YYTKW
Sbjct: 238 FSSIPIGAVCYRCTNKGGLGGGGPTIGAMASIPCGVCPRITQCTPDGIISPKTCAYYTKW 297
Query: 250 LDF 252
LDF
Sbjct: 298 LDF 300
>gi|359497031|ref|XP_003635403.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Vitis
vinifera]
Length = 239
Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 156/243 (64%), Positives = 199/243 (81%), Gaps = 5/243 (2%)
Query: 11 LGLAKGSGMSKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDN 70
+ ++GS + KRKRPD+N S L D ER++YD+IRS K+DMGIWTRDMKRE NLPDN
Sbjct: 1 MSRSQGSSL-KRKRPDTNTASQPLLDAERVLYDLIRS-KEDMGIWTRDMKRE--TNLPDN 56
Query: 71 IVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVK 130
+VTKS+K+LQ K LIKEVVNI +KG+KH MAVEFEPSK+++GGAWY EG+LDTE+IK++K
Sbjct: 57 VVTKSLKALQVKKLIKEVVNIQSKGRKHYMAVEFEPSKELTGGAWYVEGNLDTEYIKILK 116
Query: 131 SQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGE 190
C++ + KLKVAT EGIS+SI ++G + + QQI EI+RA+VLDN+IMEV+S+GSGE
Sbjct: 117 ETCVRVLSKLKVATAEGISESINKTGLCATECSTQQIAEILRALVLDNEIMEVRSSGSGE 176
Query: 191 FTNIPVGKVCYKNVSK-GGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKW 249
F++IP+G VCY+ +K G GGG P G+ AS+PCGVCP+I CTPDG+ISPKTC YYTKW
Sbjct: 177 FSSIPIGAVCYRCTNKGGLGGGGPTIGAMASIPCGVCPRITQCTPDGIISPKTCAYYTKW 236
Query: 250 LDF 252
LDF
Sbjct: 237 LDF 239
>gi|359497533|ref|XP_003635557.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Vitis
vinifera]
Length = 239
Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 156/243 (64%), Positives = 199/243 (81%), Gaps = 5/243 (2%)
Query: 11 LGLAKGSGMSKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDN 70
+ ++GS + KRKRPD+N S L D ER++YD+IRS K+DMGIWTRDMKRE NLPDN
Sbjct: 1 MSRSQGSSL-KRKRPDTNTASQPLLDAERVLYDLIRS-KEDMGIWTRDMKRE--TNLPDN 56
Query: 71 IVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVK 130
+VTKS+K+LQ K LIKEVVNI +KG+KH MAVEFEPSK+++GGAWY EG+LDTE+IK++K
Sbjct: 57 VVTKSLKALQVKKLIKEVVNIQSKGRKHYMAVEFEPSKELTGGAWYVEGNLDTEYIKILK 116
Query: 131 SQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGE 190
C++ + KLKVAT EGIS+SI ++G + + QQI EI+RA+VLDN+IMEV+S+GSGE
Sbjct: 117 KTCVRVLSKLKVATAEGISESINKTGLCATECSTQQIAEILRALVLDNEIMEVRSSGSGE 176
Query: 191 FTNIPVGKVCYKNVSK-GGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKW 249
F++IP+G VCY+ +K G GGG P G+ AS+PCGVCP+I CTPDG+ISPKTC YYTKW
Sbjct: 177 FSSIPIGAVCYRCTNKGGLGGGGPTIGAMASIPCGVCPRITQCTPDGIISPKTCAYYTKW 236
Query: 250 LDF 252
LDF
Sbjct: 237 LDF 239
>gi|356567166|ref|XP_003551792.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Glycine max]
Length = 239
Score = 310 bits (793), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 147/238 (61%), Positives = 191/238 (80%), Gaps = 3/238 (1%)
Query: 15 KGSGMSKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTK 74
+GS KRKR D + SLTD ER++Y++I S K+DMGIWT DMKRE NLPD+IV K
Sbjct: 5 QGSSSLKRKRQDLALVTGSLTDGERVLYNLIHS-KKDMGIWTGDMKRE--TNLPDSIVKK 61
Query: 75 SIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCL 134
S+K LQ+K+LIKEVVNI NKG+KH MA EFEPSK+I+GG WY++G LDT+FI +VK CL
Sbjct: 62 SLKLLQSKNLIKEVVNIQNKGRKHYMAAEFEPSKEITGGVWYNQGRLDTDFINLVKDVCL 121
Query: 135 KQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNI 194
K I + KVAT +G+ + ++SG F V++T QQI+EI+R +VLD++I+EVKS G G+F+++
Sbjct: 122 KYIFRQKVATRDGVMEWSRKSGVFNVEVTTQQIDEILRTLVLDDEIVEVKSTGFGDFSSV 181
Query: 195 PVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
PVG++CY+ SKGG GE K G+ AS+PCGVCP+INFCTPDG+ISP+TCVYY KWLDF
Sbjct: 182 PVGRICYRCKSKGGNRGEQKPGAMASIPCGVCPRINFCTPDGIISPRTCVYYQKWLDF 239
>gi|297743442|emb|CBI36309.3| unnamed protein product [Vitis vinifera]
Length = 493
Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 153/241 (63%), Positives = 199/241 (82%), Gaps = 5/241 (2%)
Query: 8 LYLLGLAKGSGMS-KRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVN 66
+ +LG+++ G+S KRKRPD+NA S L D ER++YD+IRS K+DMGIWTRDMKRE N
Sbjct: 86 ILILGMSRSQGLSLKRKRPDTNAASQPLLDAERVLYDLIRS-KEDMGIWTRDMKRE--TN 142
Query: 67 LPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
LPDN+VTKS+K+LQ K LIKEVVNI +KG+KH MAVEFEPSK+++GGAWY EG+LDTE+I
Sbjct: 143 LPDNVVTKSLKALQVKKLIKEVVNIQSKGRKHYMAVEFEPSKELTGGAWYVEGNLDTEYI 202
Query: 127 KVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSN 186
K++K C+K + KLKVAT EGIS+SI ++G + + QQI EI+RA+VLDN+IMEV+S+
Sbjct: 203 KILKETCVKVLSKLKVATAEGISESINKTGLCATECSTQQIAEILRALVLDNEIMEVRSS 262
Query: 187 GSGEFTNIPVGKVCYKNVSK-GGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVY 245
GSGEF++IP+G VCY+ +K G GGG PK G+ AS+PCGVCP+I CTPDG+ISPK+ V+
Sbjct: 263 GSGEFSSIPIGAVCYRCTNKGGLGGGGPKIGAMASIPCGVCPRITQCTPDGIISPKSSVH 322
Query: 246 Y 246
Y
Sbjct: 323 Y 323
>gi|449461094|ref|XP_004148278.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Cucumis sativus]
gi|449506569|ref|XP_004162785.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Cucumis sativus]
Length = 243
Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 137/243 (56%), Positives = 184/243 (75%), Gaps = 7/243 (2%)
Query: 14 AKGSGMSKRKRPD---SNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDN 70
++G KRKRPD N+ +L E+++YD+I S KQ MGI T DMKRE K ++
Sbjct: 4 SEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICS-KQSMGICTFDMKRETK--FAES 60
Query: 71 IVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVK 130
+VTKS+KSLQ K LIK V + NKGKK ++ +FEP+K+++GG WY +G LD ++I +K
Sbjct: 61 VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
Query: 131 SQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGE 190
C + I + K+ T+EGI +S K+SGAFKV+L+++QIEEIV A+VLDNQ+MEVKS+G GE
Sbjct: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180
Query: 191 FTNIPVGKVCYKNVSKGGG-GGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKW 249
F IP+GK+CYK ++GGG GEPKTG+ AS+PCGVCP+I +CTP+G+ISP TCVYYTKW
Sbjct: 181 FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240
Query: 250 LDF 252
LDF
Sbjct: 241 LDF 243
>gi|388504992|gb|AFK40562.1| unknown [Lotus japonicus]
Length = 232
Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 131/239 (54%), Positives = 174/239 (72%), Gaps = 14/239 (5%)
Query: 16 GSGMSKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKS 75
GS KRKRPD LTD E ++Y +I S K++MGIW D+KRE K +PDN+V K
Sbjct: 6 GSSSLKRKRPD-------LTDGEDVVYKLIHS-KENMGIWIADIKRETK--MPDNMVKKC 55
Query: 76 IKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLK 135
IKSLQ+K+L+KEVVNI ++GKK MAV+FEPSK+++GG WY++G DT+FI K LK
Sbjct: 56 IKSLQDKNLVKEVVNIQSRGKKRYMAVDFEPSKELTGGDWYTDGKFDTDFINAAKDVFLK 115
Query: 136 QIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIP 195
+ K KVAT +G+ + +++ F VD+T QQ+EEI+RA+VLD++I+EV+S G EF ++P
Sbjct: 116 YVFKQKVATCDGVLEWTRKNAVFSVDVTAQQVEEILRALVLDDEIIEVESTGKEEFASVP 175
Query: 196 VGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTP--DGVISPKTCVYYTKWLDF 252
GK+CYK SKGG GE K G+ AS+PCGVCP+I C P DG ISP+TC Y+ KWLDF
Sbjct: 176 KGKICYK--SKGGVRGEKKAGAMASIPCGVCPRIIKCAPDADGFISPRTCDYFEKWLDF 232
>gi|356530565|ref|XP_003533851.1| PREDICTED: probable DNA-directed RNA polymerase III subunit
RPC6-like [Glycine max]
Length = 237
Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 120/237 (50%), Positives = 169/237 (71%), Gaps = 7/237 (2%)
Query: 18 GMSKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIK 77
G KR+ ++ S S+ + ER +Y +IR K+ MGIW D+KRE +++PD+++ K++K
Sbjct: 6 GKRKRQVLLASTQSSSMNNEERAVYTIIRERKE-MGIWQGDIKREKNIHIPDSLLKKTLK 64
Query: 78 SLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQI 137
L K+LIKEVVN+HNK KK LMA +FEPSK+ISGG WY++G DTEFI + CL I
Sbjct: 65 MLITKNLIKEVVNVHNKSKKLLMATDFEPSKEISGGEWYTDGKFDTEFIGALSDACLSNI 124
Query: 138 IKLKVATLEGISDSIKRSGA--FKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIP 195
+ KVAT +GI I++ G+ F ++K Q+E+I++ +V++N++ EV S G G+F ++P
Sbjct: 125 RRRKVATCDGIVGWIRKVGSDVFPGGVSKGQVEQILKNLVMENKVQEVTSTGFGDFESVP 184
Query: 196 VGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
VG+VCY+ V KG GG G+ AS+PCGVCP+I+ CTPDGVISP TC YY KWLDF
Sbjct: 185 VGEVCYRLVKKGAGG----VGAMASIPCGVCPRIHSCTPDGVISPMTCQYYQKWLDF 237
>gi|356522416|ref|XP_003529842.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Glycine max]
Length = 229
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 122/233 (52%), Positives = 167/233 (71%), Gaps = 12/233 (5%)
Query: 21 KRKRPD-SNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSL 79
KRKR D ++ S S+ + E +Y++IR K +MGIW D+KRE N+PD+++ KSIK L
Sbjct: 8 KRKRQDLASRLSASMNNEEGRVYNIIRGRK-EMGIWQGDIKRE--ANIPDSLLKKSIKML 64
Query: 80 QNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIK 139
K L+KEVVN+ N+ KK LMA +FEPS +ISGG WY+EG LDTEFI + C I +
Sbjct: 65 ITKKLVKEVVNVQNRSKKLLMASDFEPSNEISGGEWYTEGKLDTEFIDKLSEACFSSIRR 124
Query: 140 LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKV 199
LKVAT EGI + I+++G ++K Q+E+I++ +V++N++ EV S+GSG+F ++PVG+V
Sbjct: 125 LKVATCEGILEWIRKAGG---GVSKGQMEQILKKLVMENKVQEVTSDGSGDFESVPVGEV 181
Query: 200 CYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
CY+ V K G G+ AS+PCGVCP+IN CTPDGVISP TC YY KWLDF
Sbjct: 182 CYRLVKKAAG-----VGAMASIPCGVCPRINSCTPDGVISPTTCQYYQKWLDF 229
>gi|15237811|ref|NP_197760.1| DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana]
gi|8809689|dbj|BAA97230.1| unnamed protein product [Arabidopsis thaliana]
gi|37202026|gb|AAQ89628.1| At5g23710 [Arabidopsis thaliana]
gi|332005818|gb|AED93201.1| DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 230
Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 113/237 (47%), Positives = 157/237 (66%), Gaps = 10/237 (4%)
Query: 19 MSKRKRPDSNAPSDSLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIK 77
MSKRKRPD + L + HE+ + D+IR N Q G ++KRE +P IVT+ I
Sbjct: 1 MSKRKRPDPKSSGGDLNEPHEKKLLDLIRIN-QGRGATMFELKRE--KTIPATIVTRLIA 57
Query: 78 SLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQI 137
SL+ K+LIKEV N++NKG KH +A+EFEP +++GG WY++G+LD I+ +K++C+ +
Sbjct: 58 SLRKKNLIKEVANMNNKGVKHYLAMEFEPCSELTGGEWYTDGALDLSKIEDLKAKCVMIL 117
Query: 138 --IKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIP 195
+ +V TLE + + VD TK EI++ ++LDN IMEVKSNG EF +
Sbjct: 118 ERHRQRVVTLEVLCGYFVKEEKLSVDQTK----EILKNLILDNLIMEVKSNGMNEFASTR 173
Query: 196 VGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
+G+VCY+ K G GEP+ G+ AS+PCGVCP I C+PDGVISP TCVY+ KWLDF
Sbjct: 174 IGEVCYRLTGKKFGNGEPRAGAFASIPCGVCPHIAICSPDGVISPTTCVYFQKWLDF 230
>gi|110739405|dbj|BAF01613.1| hypothetical protein [Arabidopsis thaliana]
Length = 230
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 112/237 (47%), Positives = 157/237 (66%), Gaps = 10/237 (4%)
Query: 19 MSKRKRPDSNAPSDSLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIK 77
MSKRKRPD + L + HE+ + D+IR N Q G ++KRE +P IVT+ I
Sbjct: 1 MSKRKRPDPKSSGGDLNEPHEKKLLDLIRIN-QGRGATMFELKRE--KTIPATIVTRLIA 57
Query: 78 SLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQI 137
SL+ K+LIKEV N++NKG KH +A+EFEP +++GG WY++G+LD I+ +K++C+ +
Sbjct: 58 SLRKKNLIKEVANMNNKGVKHYLAMEFEPCSELTGGEWYTDGALDLSKIEDLKAKCVMIL 117
Query: 138 --IKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIP 195
+ +V TLE + + VD TK EI++ ++LDN IMEVKSNG EF +
Sbjct: 118 ERHRQRVVTLEVLCGYFVKEEKLSVDQTK----EILKNLILDNLIMEVKSNGMNEFASTR 173
Query: 196 VGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
+G+VCY+ K G GEP+ G+ AS+PCGVCP I C+PDGVISP TCVY+ +WLDF
Sbjct: 174 IGEVCYRLTGKKFGNGEPRAGAFASIPCGVCPHIAICSPDGVISPTTCVYFQRWLDF 230
>gi|357502651|ref|XP_003621614.1| DNA-directed RNA polymerase III subunit RPC6 [Medicago truncatula]
gi|355496629|gb|AES77832.1| DNA-directed RNA polymerase III subunit RPC6 [Medicago truncatula]
Length = 456
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 113/234 (48%), Positives = 156/234 (66%), Gaps = 11/234 (4%)
Query: 17 SGMSKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSI 76
SG S++KR +A L ER++YD+I S K++ GI DM+RE NLP + K +
Sbjct: 9 SGSSQQKRQKLSA----LPTEERILYDLILS-KENSGISKTDMRRE--TNLPIAALNKHM 61
Query: 77 KSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQ 136
K+L NKS++KE+ +I NKG K M EFEPSKDI+GG +YSEGSLDT FI +K CL+
Sbjct: 62 KALMNKSMVKELPSIKNKGIKIYMGTEFEPSKDITGGHFYSEGSLDTVFIDALKQTCLQC 121
Query: 137 IIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPV 196
I +V+T +G + +KRSG F +T +QIEEI++ +VLD++IM++ S G G+F +IPV
Sbjct: 122 ISLERVSTCDGCLEWVKRSGVFTTQVTGEQIEEILQTLVLDDEIMQMTSTGYGDFASIPV 181
Query: 197 GKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
GK CY SK GE K+ S PC C +++FC+ DGV+SP TCVY+ KW
Sbjct: 182 GKTCYICKSK----GEKKSADSTPFPCFSCQRMSFCSSDGVVSPTTCVYFQKWF 231
>gi|297812521|ref|XP_002874144.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297319981|gb|EFH50403.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 230
Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 157/237 (66%), Gaps = 10/237 (4%)
Query: 19 MSKRKRPDSNAPSDSLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIK 77
MSKRKRPD + +L + HE+L+ ++IRS+ Q+ G ++KR+ + P ++T+
Sbjct: 1 MSKRKRPDPKSSGSNLNEPHEKLLLNLIRSS-QEKGATMNELKRDKTI--PATMITRLTT 57
Query: 78 SLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQI 137
SL+ K+LIKEV +++N+G KH +A+EFEP K+++GG WY +G+L+ I+ +K +C+ +
Sbjct: 58 SLKKKNLIKEVASMNNRGVKHFLAMEFEPGKELTGGEWYIDGTLNLSKIEDLKVKCVMIL 117
Query: 138 --IKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIP 195
+ +V TLE + + V+ TK EI++ +VLDN IMEVKSNG EF +
Sbjct: 118 ERHRHRVVTLEVMCGYFVKEEKLSVEQTK----EILKNLVLDNVIMEVKSNGLNEFASTR 173
Query: 196 VGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
+G+VCYK K G GE + G+ ASVPCG CP I C+PDGVISP TCVY+ KWLDF
Sbjct: 174 IGEVCYKLTGKKSGNGEARAGAFASVPCGACPHIGLCSPDGVISPSTCVYFQKWLDF 230
>gi|148908665|gb|ABR17440.1| unknown [Picea sitchensis]
Length = 262
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 97/232 (41%), Positives = 151/232 (65%), Gaps = 7/232 (3%)
Query: 21 KRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQ 80
K++ + + L+ + LIY I+ N +MGIWT+DMKRE + P V K++K+L+
Sbjct: 38 KQQTKEESVRFKGLSSEDMLIYQAIK-NAGNMGIWTKDMKRETNLQQPQ--VNKALKNLE 94
Query: 81 NKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKL 140
+ LIK V + N+ KK M E PSK+I+GGAWY+ + DTEF +VK QCL+ +++
Sbjct: 95 ARGLIKGVKCVSNQAKKVYMLAELTPSKEITGGAWYTGQNFDTEFTNIVKQQCLQFVLQQ 154
Query: 141 KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVC 200
VAT+E ++D +++SG KV+L +++++I+ +VLD + EV S G+G+F IP+ K+C
Sbjct: 155 GVATIESVADFVRKSGISKVELKVEELKQILDMLVLDGDVEEVISTGTGDFAAIPINKLC 214
Query: 201 YKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
Y +G ++ + ++PCGVCP + CT DG+ISPKTC+YY KWL F
Sbjct: 215 Y----RGSQARIQESSAFTNIPCGVCPVLRECTDDGLISPKTCIYYKKWLTF 262
>gi|357511407|ref|XP_003625992.1| DNA-directed RNA polymerase III subunit rpc6 [Medicago truncatula]
gi|355501007|gb|AES82210.1| DNA-directed RNA polymerase III subunit rpc6 [Medicago truncatula]
Length = 338
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 100/193 (51%), Positives = 134/193 (69%), Gaps = 3/193 (1%)
Query: 58 DMKRELKVNLPDNIVTKSIKSLQNK-SLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWY 116
DM RE +NLP ++ KS+K+L K S++KEV NI N+ KH MA E EPS+DI+GG +Y
Sbjct: 52 DMNRE--INLPTTVLNKSLKALVEKYSMVKEVPNIQNEDIKHYMAAELEPSEDITGGHFY 109
Query: 117 SEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVL 176
S+G LDT FI +K CLK I KV+T +G + IK+S F ++T +QIEEI++ +VL
Sbjct: 110 SDGKLDTGFIDALKKVCLKCIFMHKVSTCDGCLEWIKKSEIFNTEVTGKQIEEILQTLVL 169
Query: 177 DNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDG 236
D++IM++ S G G+F IPVGK CY SKGG GE K+G S PC C +++FC+PDG
Sbjct: 170 DDEIMQMTSAGYGDFAFIPVGKTCYICKSKGGVIGEKKSGYFTSFPCFSCERMSFCSPDG 229
Query: 237 VISPKTCVYYTKW 249
V+SP CVYY KW
Sbjct: 230 VVSPGACVYYQKW 242
>gi|242096318|ref|XP_002438649.1| hypothetical protein SORBIDRAFT_10g023580 [Sorghum bicolor]
gi|241916872|gb|EER90016.1| hypothetical protein SORBIDRAFT_10g023580 [Sorghum bicolor]
Length = 260
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/236 (39%), Positives = 142/236 (60%), Gaps = 17/236 (7%)
Query: 25 PDSNAPSDS------LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKS 78
PDS P+ S L ERL Y +I + G+W D++++L + NI TK +++
Sbjct: 34 PDSEQPTISATILAQLPTQERLAYKLI-FEAGNKGMWMLDIRKKLLMG--PNIATKVVRT 90
Query: 79 LQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQII 138
L + L+KEV ++ ++ +K MA +F+PS +I+GG WY +G LDT+ + + C Q+
Sbjct: 91 LVGRGLLKEVSDVRHRSRKIFMATDFQPSAEITGGTWYHDGRLDTDAVSTARRCCQAQVE 150
Query: 139 KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGK 198
+L AT + I + I + V T +I +I++ +VLD + EVKS G+GEFT + G
Sbjct: 151 RLGAATAQMIHNGILKDDPRAV-YTIDKIRDIIKTMVLDKVLEEVKSTGTGEFTAVRAGT 209
Query: 199 VCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWL--DF 252
+CY+ V+ G P+ G +PCGVCP+I+ C+P+GVISP TCVYY KWL DF
Sbjct: 210 MCYRLVT-----GAPQGGMMEGIPCGVCPRIDECSPEGVISPSTCVYYKKWLQMDF 260
>gi|51090893|dbj|BAD35466.1| unknown protein [Oryza sativa Japonica Group]
gi|125597789|gb|EAZ37569.1| hypothetical protein OsJ_21900 [Oryza sativa Japonica Group]
gi|215717140|dbj|BAG95503.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765565|dbj|BAG87262.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 260
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 139/222 (62%), Gaps = 12/222 (5%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+L+ HER IY ++ + D G+ +++ +K +P + +TK ++ L +K ++K V ++H
Sbjct: 49 ALSQHERPIYKLVFAGG-DKGMSQTEIR--IKTGMPTSTLTKHLRGLTSKGVLKVVNSVH 105
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSI 152
+ +K M V +PS +I+GG WY G LD++ + + +CL QI KL VAT E I + I
Sbjct: 106 KRAEKIYMDVRIDPSPEITGGTWYRNGQLDSDAVASARRRCLDQIDKLGVATAESIHEGI 165
Query: 153 KRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGE 212
R + + + +Q+ +I+R + LD ++ EV+S G+GEF ++ G+VCY+ GG
Sbjct: 166 SRECS-NLAYSTEQVRDILRTMALDREVEEVRSTGAGEFGDLRAGRVCYRR------GGP 218
Query: 213 PKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWL--DF 252
+ G +PCGVCP+I+ C+PDGVISP TCVYY KWL DF
Sbjct: 219 VQGGMMERIPCGVCPRIDECSPDGVISPSTCVYYKKWLQMDF 260
>gi|357123938|ref|XP_003563664.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like
[Brachypodium distachyon]
Length = 258
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/231 (37%), Positives = 137/231 (59%), Gaps = 16/231 (6%)
Query: 25 PDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSL 84
P S A ++L ER +Y + + + GIW++D++ +++ P VTK ++L + +
Sbjct: 39 PISAAILNNLPGPEREVYKRVYAAG-NKGIWSQDLRHSMQLAAP--TVTKLTRALVQRGI 95
Query: 85 IKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVAT 144
+KEV ++ ++GKK M EP+ +I+GG WY G LDTE + V+ +CL QI +L AT
Sbjct: 96 LKEVTDVRHRGKKVFMDSRMEPAPEITGGTWYHNGQLDTEAVAAVRRRCLDQIDRLGAAT 155
Query: 145 LEGISDSIKRS---GAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCY 201
+ + ++R + +D QI +I++ + LD + E +S G GEF+ + G+VCY
Sbjct: 156 PDMVHKGVEREDPRAGYMID----QIRDILKTMALDRVLEECRSTGEGEFSAVRSGRVCY 211
Query: 202 KNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
+ GG P+ G +PCGVCP+I+ C+PDGVISP TCVYY KWL
Sbjct: 212 RR------GGAPQGGMIEGIPCGVCPRIDECSPDGVISPTTCVYYKKWLQM 256
>gi|223975579|gb|ACN31977.1| unknown [Zea mays]
gi|413935838|gb|AFW70389.1| RNA polymerase Rpc34 subunit family protein [Zea mays]
gi|413954528|gb|AFW87177.1| RNA polymerase Rpc34 subunit family protein [Zea mays]
Length = 260
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 90/236 (38%), Positives = 141/236 (59%), Gaps = 17/236 (7%)
Query: 25 PDSNAPSDS------LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKS 78
PDS P S L ERL Y +I + G+W D++++L + NI TK +++
Sbjct: 34 PDSEQPIISAAILAQLPPQERLAYKLI-FEAGNKGMWMLDIRKKLLMG--PNIATKVVRT 90
Query: 79 LQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQII 138
L + L+KEV ++ ++ +K MA +F+PS +I+GG WY +G LDT+ + + C Q+
Sbjct: 91 LVTRRLLKEVSDVRHRSRKIFMATDFQPSAEITGGTWYHDGRLDTDAVTTARRCCQAQVE 150
Query: 139 KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGK 198
+L AT++ I I + + T +I +I++ +VLD + EVKS G+GEF ++ G
Sbjct: 151 RLGAATVQMIHHGILKDDP-RAGYTIDKIRDIIKTMVLDKVLEEVKSTGTGEFRDVRAGT 209
Query: 199 VCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWL--DF 252
+CY+ V+ G P+ G +PCGVCP+I+ C+P+G+ISP TCVYY KWL DF
Sbjct: 210 MCYRLVT-----GAPQGGMMEGIPCGVCPRIDECSPEGIISPSTCVYYKKWLQMDF 260
>gi|326504832|dbj|BAK06707.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326519883|dbj|BAK03866.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 267
Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 85/223 (38%), Positives = 134/223 (60%), Gaps = 12/223 (5%)
Query: 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNI 91
++L ER +Y I + G+W++D++ +K+ P +TK ++L + ++KEV ++
Sbjct: 55 NNLPGPEREVYKRI-YEAGNKGMWSQDIRYTMKLAAP--TLTKLTRALVQRGILKEVTDV 111
Query: 92 HNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDS 151
++GKK M EPS +I+GG WY G LDT+ + V+ +CL QI +L AT + +
Sbjct: 112 RHRGKKVFMDARIEPSPEITGGTWYHNGQLDTDAVAAVRRRCLDQIDRLGAATPDMVHKG 171
Query: 152 IKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGG 211
++R + + QI +I++ + LD + E +S G GEF+ + G+VCY+ GG
Sbjct: 172 VEREDP-RAGYSIDQIRDILQTMALDRVLEECRSTGEGEFSAVRAGRVCYRR------GG 224
Query: 212 EPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWL--DF 252
P+ G +PCGVCP+I+ C+PDGVISP TCVYY KWL DF
Sbjct: 225 APQGGMIEGIPCGVCPRIDECSPDGVISPPTCVYYKKWLQMDF 267
>gi|226530096|ref|NP_001151058.1| RNA polymerase Rpc34 subunit family protein [Zea mays]
gi|195643984|gb|ACG41460.1| RNA polymerase Rpc34 subunit family protein [Zea mays]
Length = 260
Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 89/236 (37%), Positives = 141/236 (59%), Gaps = 17/236 (7%)
Query: 25 PDSNAPSDS------LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKS 78
PDS P S L ERL Y +I + G+W D++++L + NI TK +++
Sbjct: 34 PDSEQPIISAAILAQLPPQERLAYKLI-FEAGNKGMWMLDIRKKLLMG--PNIATKVVRT 90
Query: 79 LQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQII 138
L + L+KEV ++ ++ +K MA +F+PS +I+GG WY +G LDT+ + + C Q+
Sbjct: 91 LVTRRLLKEVSDVRHRSRKIFMATDFQPSAEITGGTWYHDGRLDTDAVTTARRCCQAQVE 150
Query: 139 KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGK 198
+L AT++ I I + + T +I +I++ +VLD + EVKS G+GEF ++ G
Sbjct: 151 RLGAATVQMIHHGILKDDP-RAGYTIDKIRDIIKTMVLDKVLEEVKSTGTGEFRDVRAGT 209
Query: 199 VCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWL--DF 252
+CY+ V+ G P+ G+ +PCGVCP+I+ C+P+G+ISP TCVYY WL DF
Sbjct: 210 MCYRLVT-----GAPQGGTMEGIPCGVCPRIDECSPEGIISPSTCVYYKNWLQMDF 260
>gi|226494183|ref|NP_001147652.1| LOC100281261 [Zea mays]
gi|194702730|gb|ACF85449.1| unknown [Zea mays]
gi|195612858|gb|ACG28259.1| RNA polymerase Rpc34 subunit family protein [Zea mays]
Length = 257
Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 82/221 (37%), Positives = 136/221 (61%), Gaps = 11/221 (4%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
L + ERL+Y +I + G+W D+++ K+ + N+ TK +++L L+KEV ++ +
Sbjct: 46 LPNQERLVYKLI-FEAGNKGMWMLDIRK--KLLMAPNVATKVVRTLVASGLLKEVSDVRH 102
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIK 153
+ +K MA +F+PS +I+GG WY +G LDT+ + + C Q+ +L AT + I I
Sbjct: 103 RSRKIFMATDFQPSAEITGGTWYHDGRLDTDAVTTARRCCQAQVQRLGAATAQMIHQGIL 162
Query: 154 RSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEP 213
+ + T ++ +I++ +VLD + EVKS G+G+F+ + G +CY+ V+ G P
Sbjct: 163 KEDP-RAGYTIDKVRDIIKTMVLDKVLEEVKSTGAGDFSAVRAGTMCYRLVT-----GAP 216
Query: 214 KTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWL--DF 252
+ G +PCGVCP+I+ C+P+G+ISP TCVYY KWL DF
Sbjct: 217 QGGMMEGIPCGVCPRIHECSPEGIISPSTCVYYKKWLQMDF 257
>gi|168002808|ref|XP_001754105.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694659|gb|EDQ81006.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 361
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/232 (37%), Positives = 142/232 (61%), Gaps = 12/232 (5%)
Query: 21 KRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQ 80
K + D L+ + L+Y I + + GIWT D+KR + NL + K++K+L+
Sbjct: 142 KEQSADVAVKFKGLSSEDMLVYQSIEAAA-NQGIWTADLKR--RTNLQQPQINKALKNLE 198
Query: 81 NKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKL 140
+SL+K V + NK +K M + PS++++GGAWY+E D EF+ VVK QCL+ I +
Sbjct: 199 GRSLVKAVKTVTNKNRKVYMLFDLTPSREVTGGAWYTEQDYDAEFVDVVKQQCLQFITRQ 258
Query: 141 KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVC 200
+A LE I+D+IK+SG +V+L ++ ++I+ +VLD + E + G G +++ +C
Sbjct: 259 GLADLEAIADAIKKSGITQVELGLEEFKQIMDTLVLDGDVEE--TMGGGTYSS---DTLC 313
Query: 201 YKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
Y+ V+K P+T + +VPCG+CP ++ C P G++SP+TCVY+ WL F
Sbjct: 314 YR-VAK---ARIPETSALTNVPCGICPVLHECQPGGLVSPETCVYFNDWLSF 361
>gi|413943766|gb|AFW76415.1| RNA polymerase Rpc34 subunit family protein [Zea mays]
Length = 193
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 125/201 (62%), Gaps = 10/201 (4%)
Query: 54 IWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGG 113
+W D+++ K+ + N+ TK +++L L+KEV ++ ++ +K MA +F+PS +I+GG
Sbjct: 1 MWMLDIRK--KLLMAPNVATKVVRTLVASGLLKEVSDVRHRSRKIFMATDFQPSAEITGG 58
Query: 114 AWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRA 173
WY +G LDT+ + + C Q+ +L AT + I I + + T ++ +I++
Sbjct: 59 TWYHDGRLDTDAVTTARRCCQAQVQRLGAATAQMIHQGILKEDP-RAGYTIDKVRDIIKT 117
Query: 174 VVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCT 233
+VLD + EVKS G+G+F+ + G +CY+ V+ G P+ G +PCGVCP+I+ C+
Sbjct: 118 MVLDKVLEEVKSTGAGDFSAVRAGTMCYRLVT-----GAPQGGMMEGIPCGVCPRIHECS 172
Query: 234 PDGVISPKTCVYYTKWL--DF 252
P+G+ISP TCVYY KWL DF
Sbjct: 173 PEGIISPSTCVYYKKWLQMDF 193
>gi|145356015|ref|XP_001422238.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582478|gb|ABP00555.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 259
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 134/241 (55%), Gaps = 4/241 (1%)
Query: 13 LAKGSGM-SKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
+G G+ R R A L+ + L+Y +I+ + + G+WT+++K+ + NLP
Sbjct: 22 FGRGGGLVYARVREAQAAKFKGLSTEDMLVYQIIQ-HAGNAGMWTKELKQ--RSNLPVPQ 78
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+TK K+L+ + LIK V ++ + +K M E EPS++I+GGAWY+E D EFI V++
Sbjct: 79 ITKIFKTLEARKLIKSVKHVAQQNRKVYMLYELEPSREITGGAWYTEQEYDAEFISVLRE 138
Query: 132 QCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEF 191
QC+K I + TL+ +SD ++ S ++DL + ++ +IV +V D ++ E+K +
Sbjct: 139 QCVKFIYSRERVTLKEVSDFVRASELSRIDLGQDEVLQIVNTLVYDGKVDEIKDESQDDG 198
Query: 192 TNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLD 251
P++ + +PCGVCP IN C PDG+I+P +C Y T WL+
Sbjct: 199 MGKADEDFQPITFYTRAALPVPESNAYTDIPCGVCPVINECRPDGLINPSSCEYMTAWLN 258
Query: 252 F 252
F
Sbjct: 259 F 259
>gi|159485518|ref|XP_001700791.1| hypothetical protein CHLREDRAFT_155892 [Chlamydomonas reinhardtii]
gi|158281290|gb|EDP07045.1| predicted protein [Chlamydomonas reinhardtii]
Length = 285
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 132/251 (52%), Gaps = 25/251 (9%)
Query: 8 LYLLGLAKGSGMSKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNL 67
L LL + G + K + A L+ E LIY I++ + G+WT+DM+ ++ NL
Sbjct: 54 LQLLKTSNGKLVYKEVAVEEAAKFKGLSPEELLIYQCIKT-AGNTGVWTKDMR--IRTNL 110
Query: 68 PDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIK 127
+TK +K L+ + L+K V N+++ +K M E EPS++++GGAWY+E D+EFI
Sbjct: 111 AQPQITKILKVLEGRKLVKAVKNVNSPSRKVYMLAELEPSRELTGGAWYTENQFDSEFIN 170
Query: 128 VVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNG 187
V++ C I + +L ++ I+ G KV+L + I+ IV +V D ++ EV+ G
Sbjct: 171 VLREACFSYISRQGDVSLSAVAAFIRAKGFSKVELRTEDIQTIVMTLVYDGRVDEVEPEG 230
Query: 188 SGEFTN------IPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPK 241
+ + +PV P + VPCGVCP C GVISPK
Sbjct: 231 EDDNDDHYRPAVLPV----------------PDSTPLTDVPCGVCPVAGQCHDGGVISPK 274
Query: 242 TCVYYTKWLDF 252
TCVYY KWL+F
Sbjct: 275 TCVYYDKWLEF 285
>gi|255080198|ref|XP_002503679.1| RNA polymerase [Micromonas sp. RCC299]
gi|226518946|gb|ACO64937.1| RNA polymerase [Micromonas sp. RCC299]
Length = 307
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 131/230 (56%), Gaps = 16/230 (6%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
L + L+Y +I+ + + GIWT+++K+ + NL +TK KSL+++ LIK V ++
Sbjct: 72 LASEDLLVYQIIQQSG-NSGIWTKELKQ--RSNLAQAQITKIFKSLESRKLIKAVKSVSQ 128
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIK 153
+ +K M E EPS++I+GGAWY+E D EFI V++ QC K I+ TL+ +SD +K
Sbjct: 129 QNRKVYMLYELEPSREITGGAWYTEHEYDAEFINVLREQCEKFIVGQGKVTLDQVSDFVK 188
Query: 154 RSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGE-FTNIPVGKVCYKNVSKGGGGGE 212
++ V+L K+++ +IV +V D ++ + + GE + G N + G GE
Sbjct: 189 KTKLSHVELGKEEVLQIVNTLVYDGKVDQFDEHEKGEGDADDAKGDGDVGNDERDYGDGE 248
Query: 213 ------------PKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
P+ + SVPCGVCP N C P G+ISP+TCVY +WL
Sbjct: 249 KVTYYVPAAYPVPEKSAFTSVPCGVCPVFNECRPGGLISPETCVYMEEWL 298
>gi|308813722|ref|XP_003084167.1| RNA polymerase III, subunit C34 (ISS) [Ostreococcus tauri]
gi|116056050|emb|CAL58583.1| RNA polymerase III, subunit C34 (ISS) [Ostreococcus tauri]
Length = 371
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 131/233 (56%), Gaps = 7/233 (3%)
Query: 22 RKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQN 81
R R + A L+ + L+Y +I+ + + G+WT+++K+ + NLP +TK K+L+
Sbjct: 144 RVREERAAKFKGLSTEDMLVYQIIQ-HAGNAGMWTKELKQ--RSNLPVPQITKIFKTLEA 200
Query: 82 KSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLK 141
+ LIK V ++ + +K M E EPS++I+GGAWY+EG+ D EFI V++ QC+K I
Sbjct: 201 RKLIKAVKHVTQQNRKVYMLYELEPSREITGGAWYTEGTHDDEFINVLREQCVKFIYSRD 260
Query: 142 VATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCY 201
TL +S+ ++ S V+L ++ +IV +V D ++ E + + + V +
Sbjct: 261 RVTLSEVSEFVRSSKLSHVELGTDEVLQIVNTLVFDGKVDENEDESQDD--GMTVADEDF 318
Query: 202 KNVSKGGGGGEPKTGSS--ASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
K V P S+ +PCGVCP IN C PDG+I+P C Y T WL+F
Sbjct: 319 KAVKYYSRAALPVPDSNPYTDIPCGVCPVINECRPDGLINPIDCEYMTAWLNF 371
>gi|384251133|gb|EIE24611.1| RNA polymerase Rpc34 [Coccomyxa subellipsoidea C-169]
Length = 275
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/219 (36%), Positives = 121/219 (55%), Gaps = 17/219 (7%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
L+ + L+Y I + D GIWT+D+K + NL +TK +K+L +SL+K V ++ N
Sbjct: 74 LSAEDLLVYQHI-AQAGDTGIWTKDLKN--RTNLQQPQITKILKNLDQRSLVKSVKSVIN 130
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIK 153
+K + E EP+++++GGAWY+ D EFI+V++ C K I VATLE ++D ++
Sbjct: 131 PSRKVYILFELEPARELTGGAWYTGQDFDAEFIQVLQQACHKYIENEGVATLEEVADFVR 190
Query: 154 RSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEP 213
G +V+L + I+R + D ++E + GE V + P
Sbjct: 191 TKGFSRVELRDADVLCILRTLEFDG-LVESSLSDDGE-------------VYRPARHVVP 236
Query: 214 KTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
KT S+PCGVCP IN C+ GVISP TC YY WLDF
Sbjct: 237 KTSPFTSMPCGVCPVINECSDGGVISPSTCTYYQTWLDF 275
>gi|303272183|ref|XP_003055453.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463427|gb|EEH60705.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 294
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 125/225 (55%), Gaps = 15/225 (6%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
L+ + L+Y +I+S+ + GIWT+++K+ K NLP +TK K L+ + LIK V N+
Sbjct: 72 LSSEDLLVYQIIQSSG-NTGIWTKELKQ--KSNLPQTQITKIFKVLEARKLIKSVKNVAQ 128
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIK 153
+ +K M E EPS++I+GGAWY+E D EFI V++ QC K I ATL+ + D +K
Sbjct: 129 QNRKVYMLFELEPSREITGGAWYTEHEYDAEFISVLREQCDKFINSRGKATLDDVWDFVK 188
Query: 154 RSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGE- 212
R+ VDL K+++ +IV +V D +I ++ G K++ G G +
Sbjct: 189 RAKLSNVDLGKEEVLQIVNTLVYDGKIDAIEVPDPNFKPTAKKG----KDIDAGHEGEDY 244
Query: 213 -------PKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
P + +VPCG+CP C P G+ISP+TC Y WL
Sbjct: 245 SPAAIPIPSESALTNVPCGLCPVFEECVPGGLISPETCEYMDAWL 289
>gi|224134951|ref|XP_002327530.1| predicted protein [Populus trichocarpa]
gi|222836084|gb|EEE74505.1| predicted protein [Populus trichocarpa]
Length = 127
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/97 (69%), Positives = 82/97 (84%), Gaps = 3/97 (3%)
Query: 21 KRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQ 80
KRKRP ++PS SLTDHER +YDVIRS K+DMGIWTRDMK+E NLPDN+V KS+K+L
Sbjct: 12 KRKRPGLSSPSQSLTDHERKLYDVIRS-KKDMGIWTRDMKKE--TNLPDNVVNKSLKALH 68
Query: 81 NKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYS 117
K+LIKEVVNI NKG+KH MA EF+PSK+++GG+W S
Sbjct: 69 AKNLIKEVVNIQNKGRKHYMATEFQPSKELTGGSWIS 105
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/24 (87%), Positives = 23/24 (95%)
Query: 229 INFCTPDGVISPKTCVYYTKWLDF 252
I+ CTPDGVISP+TCVYYTKWLDF
Sbjct: 104 ISLCTPDGVISPRTCVYYTKWLDF 127
>gi|293332023|ref|NP_001168568.1| uncharacterized protein LOC100382351 [Zea mays]
gi|223949221|gb|ACN28694.1| unknown [Zea mays]
gi|413950365|gb|AFW83014.1| hypothetical protein ZEAMMB73_193969 [Zea mays]
Length = 187
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 114/191 (59%), Gaps = 12/191 (6%)
Query: 64 KVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDT 123
K+ + NI TK +++L L+KEV ++ ++ +K MA +F+ +I+GG WY +G LDT
Sbjct: 7 KLLMAPNIATKVVRTLVASGLLKEVSDVRHRSRKIFMATDFQSFAEITGGTWYHDGRLDT 66
Query: 124 EFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEV 183
+ + + C Q+ +L AT + I I + + T ++++I++ +VL+ EV
Sbjct: 67 DAVSTARRCCQAQVERLGAATAQMIHHDILKEDP-RAGYTIDKVKDIIKTMVLE----EV 121
Query: 184 KSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTC 243
KS G+ +F+ + G +CY+ V+ G P+ G + CG+CP+ + C+P+G+ISP TC
Sbjct: 122 KSTGTRDFSAVMAGTMCYRLVT-----GAPQGGMMEGIHCGICPRTHECSPEGIISPSTC 176
Query: 244 VYYTKWL--DF 252
VYY KWL DF
Sbjct: 177 VYYKKWLQMDF 187
>gi|307109209|gb|EFN57447.1| hypothetical protein CHLNCDRAFT_59631 [Chlorella variabilis]
Length = 281
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 119/219 (54%), Gaps = 15/219 (6%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
LT + L+Y I+ +MGIWTRDMK+ + NL + K +K+L+ + L+K + ++ N
Sbjct: 78 LTAEDMLVYQCIQ-GAGNMGIWTRDMKQ--RTNLQQPKINKILKTLEERCLVKSIKSVQN 134
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIK 153
+K M E EP+K+++GG WY + D+EFI V++ + I ATL I IK
Sbjct: 135 ASRKVYMLYELEPAKELTGGPWYGPDAFDSEFITVLQEATMSYINTKGDATLADIVRFIK 194
Query: 154 RSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEP 213
+G K L + +E I+ + D +I V+ + G +P ++ ++ P
Sbjct: 195 ETGISKQALQEDDVERIINTLECDGKIEGVEGDEDG----LPHYRLPLMSI--------P 242
Query: 214 KTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
+ S+PCGVCP N C G ISP+TC+Y+ +WLDF
Sbjct: 243 EATPFTSIPCGVCPVFNECVEGGKISPQTCIYFDQWLDF 281
>gi|299473570|emb|CBN77965.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 300
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 121/219 (55%), Gaps = 9/219 (4%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
LT + +IY VI + GIWTRD+K VN N +TK++KSL+ + L+K ++ +
Sbjct: 84 LTPEQMMIYQVIE-KAGNKGIWTRDIKTATNVN--QNTMTKTLKSLEGRHLVKTAKSVTS 140
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIK 153
K KK M E P+K+I+GG WY++ D EF+K + S L + + + L+ I+ +IK
Sbjct: 141 KSKKLYMLYELTPAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQETPPLKDIAAAIK 200
Query: 154 RSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEP 213
SG K+DL+ ++++ IV +V D + EV+ S + G V YK
Sbjct: 201 VSGISKIDLSMEEVKLIVSTLVYDGLLEEVRGAASRFNRDAGDGPV-YKM-----APAVE 254
Query: 214 KTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
+ VPCG C + C+ DGV+SPKTCVY +WL+
Sbjct: 255 VVNAFTEVPCGTCKVMKHCSEDGVVSPKTCVYLAEWLNL 293
>gi|302845389|ref|XP_002954233.1| hypothetical protein VOLCADRAFT_118667 [Volvox carteri f.
nagariensis]
gi|300260438|gb|EFJ44657.1| hypothetical protein VOLCADRAFT_118667 [Volvox carteri f.
nagariensis]
Length = 271
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 105/183 (57%), Gaps = 13/183 (7%)
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+TK +K L+++ L+K V N++N +K M E EPS++++GGAWY+E D+EFI V++
Sbjct: 100 ITKILKVLESRRLVKSVKNVNNPSRKVYMLSELEPSRELTGGAWYTENQFDSEFINVLRE 159
Query: 132 QCLKQI-IKLKVATLEG-ISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSG 189
C I K KV++ G I+ I+ G KV+L + I I+ +V D ++ EV+ G
Sbjct: 160 ACYSYIKRKDKVSSSLGEIAAFIRSRGFSKVELRIEDIHTIIMTLVYDGRVDEVEPEGDE 219
Query: 190 EFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKW 249
+ + + + G P + S VPCGVCP C GVISP+TC+YY KW
Sbjct: 220 DEDHYRLAVL-----------GIPDSTSLTDVPCGVCPVAGECAEGGVISPQTCIYYDKW 268
Query: 250 LDF 252
L+F
Sbjct: 269 LEF 271
>gi|301121919|ref|XP_002908686.1| DNA-directed RNA polymerase III subunit RPC6, putative
[Phytophthora infestans T30-4]
gi|262099448|gb|EEY57500.1| DNA-directed RNA polymerase III subunit RPC6, putative
[Phytophthora infestans T30-4]
Length = 297
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 120/218 (55%), Gaps = 13/218 (5%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
LT +RL+ I + GIWTRD+K N+P IVTK+++ L+ + L+K V +I +
Sbjct: 85 LTLEQRLVLQEIE-RAGNKGIWTRDIKSH--TNIPQQIVTKTLRLLETRRLVKSVKSISS 141
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIK 153
K KK M + PS +I+GG WY+E D FI + + + I ++TL I+D +
Sbjct: 142 KNKKLYMLFDLVPSTEITGGPWYNEQEFDHVFIDTLSTFVYEVIKASGMSTLNAITDKVH 201
Query: 154 RSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEP 213
SG KV L ++I I++ ++ D ++ EV+S T +V YK VS+ +
Sbjct: 202 ASGISKVALGPEEIRSIIQTLMYDGRVEEVRSV---RLTPGASHEVKYK-VSQ-----QI 252
Query: 214 KTGSSAS-VPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
T + S PCGVCP + C VISP++C+Y TKWL
Sbjct: 253 TTFNYLSETPCGVCPVFDQCQEGNVISPRSCLYMTKWL 290
>gi|348684826|gb|EGZ24641.1| hypothetical protein PHYSODRAFT_554736 [Phytophthora sojae]
Length = 301
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 120/218 (55%), Gaps = 13/218 (5%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
LT +RL+ I + GIWTRD+K N+P IVTK+++ L+ + L+K V +I +
Sbjct: 89 LTLEQRLVLQEI-ERAGNKGIWTRDIKSH--TNIPQQIVTKTLRLLETRRLVKSVKSISS 145
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIK 153
K KK M + PS +I+GG WY+E D FI + + + I ++TL I+D +
Sbjct: 146 KNKKLYMLFDLVPSTEITGGPWYNEQEFDHVFIDTLSTFVYEVIKASGMSTLNAITDKVH 205
Query: 154 RSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEP 213
SG KV L ++I I++ ++ D ++ EV+S T +V YK VS+ +
Sbjct: 206 ASGISKVALGPEEIRSIIQTLMYDGRVEEVRSV---RLTPGASHEVKYK-VSQ-----QI 256
Query: 214 KTGSSAS-VPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
T + S PCGVCP + C VISP++C+Y TKWL
Sbjct: 257 TTFNYLSETPCGVCPVFDQCQEGNVISPRSCLYMTKWL 294
>gi|45361485|ref|NP_989319.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa [Xenopus
(Silurana) tropicalis]
gi|39794390|gb|AAH64209.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa [Xenopus
(Silurana) tropicalis]
Length = 314
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 132/261 (50%), Gaps = 31/261 (11%)
Query: 13 LAKGSGMSKR-KRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L G+G+ R K P + + E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 64 LRSGAGLLYRLKDPQTAGKMKGSDNQEKLVYQIIE-DADNKGIWSRDIR--YKSNLPLTE 120
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 121 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 180
Query: 132 QCLKQI-IKLKVATLEGISDSIKRSGAF----------------KVDLTKQQIEEIVRAV 174
QC K + K + A + I+R+ +F KV+L+ + IE I+ +
Sbjct: 181 QCFKFLQTKAEAARDSKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTL 240
Query: 175 VLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASV--PCGVCPQINF 231
+ D ++ M + + G ++ Y+ V+ P T + V PCG+CP +
Sbjct: 241 IYDGKVEMTIIAAKEGTVGSVDGQMKLYRGVN-------PITQPAGLVRTPCGLCPVFDD 293
Query: 232 CTPDGVISPKTCVYYTKWLDF 252
C G ISP C+Y T WLDF
Sbjct: 294 CHEGGEISPSNCIYMTDWLDF 314
>gi|328769882|gb|EGF79925.1| hypothetical protein BATDEDRAFT_12133 [Batrachochytrium
dendrobatidis JAM81]
Length = 233
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 118/234 (50%), Gaps = 25/234 (10%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
S++D+ER++Y I+++ + G W +D+K +K L IVT+ IK+L+ K LIK V ++
Sbjct: 11 SMSDNERIVYQFIKASG-NKGTWIKDIK--VKSGLHAQIVTQMIKNLEKKVLIKAVKSVK 67
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKV---------- 142
KK M E +PS +++GGAWY++ LD EFI + Q K I
Sbjct: 68 TPTKKVYMLSELDPSVELTGGAWYTDQELDVEFIDQLAHQIYKYICSKSFPPNTNSIFPS 127
Query: 143 ----ATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGK 198
T + I +SG V L+ ++ ++ ++ D ++ +++S +G +I +
Sbjct: 128 SHPYPTCNDLHKWISKSGITTVQLSHTDVQSLIDRLIFDGKVEQIQSIHTGSNEDIWAYR 187
Query: 199 VCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
+V G + VPCG CP +FC G +SP CVY+ KWL F
Sbjct: 188 ATRSSVLNGSVWTD--------VPCGRCPVFSFCEEGGPVSPSGCVYFKKWLSF 233
>gi|405973850|gb|EKC38540.1| DNA-directed RNA polymerase III subunit RPC6 [Crassostrea gigas]
Length = 312
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 132/259 (50%), Gaps = 29/259 (11%)
Query: 13 LAKGSGMSKR-KRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L GS + R K PDS + E+L+Y +I+ + + GIW RD++ K NL
Sbjct: 64 LKSGSKLLYRLKDPDSARQVKGGDNQEKLVYQIIK-DAGNKGIWIRDIR--FKCNLLLTQ 120
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
V K +K+L+ K LIK V ++ KK M EP + ++GGAWYS+ ++EF++V+
Sbjct: 121 VNKILKNLETKKLIKAVKSVAASKKKVYMLYNLEPDRSVTGGAWYSDQDFESEFVEVLNQ 180
Query: 132 QCLKQIIKLKVATLEGISDSI-KRSGAF----------------KVDLTKQQIEEIVRAV 174
QC K + + A E SD I +R+ +F KV L+K+ IE I+ +
Sbjct: 181 QCFKYLEQRAAAAREAKSDPIAQRNASFTPLEDVWKYISDLGISKVQLSKEDIETILNTL 240
Query: 175 VLDNQIMEVKSNGSGEFTNIPVGKV-CYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCT 233
+ D ++ +S +G+ T G V Y++V P TG +PCG CP + C
Sbjct: 241 IYDGKVE--RSLVAGQATASGDGYVKLYRSVQPLI----PTTG-LMRMPCGACPVFDQCY 293
Query: 234 PDGVISPKTCVYYTKWLDF 252
G +SP TCVY +WL+
Sbjct: 294 EGGAVSPTTCVYMKEWLEI 312
>gi|410917566|ref|XP_003972257.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Takifugu rubripes]
Length = 316
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 124/235 (52%), Gaps = 26/235 (11%)
Query: 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKG 95
+ E+L+Y +I + + GIW+RD++ K NLP + K +K+L++K LIK V ++
Sbjct: 90 NQEKLVYQIIE-DAGNKGIWSRDIR--FKSNLPLTEINKILKNLESKKLIKAVKSVAASK 146
Query: 96 KKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKR 154
KK M +P + ++GGAWYS+ ++EF++V+ QC K + K + A S ++R
Sbjct: 147 KKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAEAARDSKHSPMVQR 206
Query: 155 SGAF----------------KVDLTKQQIEEIVRAVVLDNQI-MEVKSNGSGEFTNIPVG 197
+ +F KVDL+ IE I+ ++ D ++ M V + G ++ G
Sbjct: 207 NSSFATSHEVWKYICELGISKVDLSMDDIETILNTLIYDGKVEMTVIAAKEGTVGSVD-G 265
Query: 198 KVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
+V + +G TG PCG+CP + C G ISP TC+Y T+WLDF
Sbjct: 266 QV---KLYRGVNAVIQPTG-LIRTPCGLCPVFDDCHEGGEISPSTCIYLTEWLDF 316
>gi|156371113|ref|XP_001628610.1| predicted protein [Nematostella vectensis]
gi|156215591|gb|EDO36547.1| predicted protein [Nematostella vectensis]
Length = 315
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 123/260 (47%), Gaps = 30/260 (11%)
Query: 13 LAKGSGMSKRKRPD--SNAPSDSLTDHERLIYDVIR--SNKQDMGIWTRDMKRELKVNLP 68
L GS + + + D +N + E+L+Y I SNK GIW RD++ K NL
Sbjct: 66 LKSGSQLLYKYKDDQQTNQKTKGFELEEKLVYQTIEESSNK---GIWIRDIR--YKCNLQ 120
Query: 69 DNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKV 128
+ + IK+L++K LIK V ++ KK M EP + ++GGAWYS+ + EF++V
Sbjct: 121 MTQLNRIIKTLESKKLIKAVKSVAASKKKVYMLFNLEPDESVTGGAWYSDQDFEAEFVEV 180
Query: 129 VKSQCLKQIIK--------------LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAV 174
+ QC K + + A E + I + G KV L+ IE I+ +
Sbjct: 181 LNQQCFKYLEQKAEKLHADPVARRNASYAPAEDVWKYITQLGISKVQLSVHDIETILSTL 240
Query: 175 VLDNQIME--VKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFC 232
+ D ++ V + S T + K Y+ + P TG S PCGVCP I+ C
Sbjct: 241 IFDGRVETTIVSAGTSTSRTAVSGQKTLYRAIFPIV----PSTGLMTS-PCGVCPVIDHC 295
Query: 233 TPDGVISPKTCVYYTKWLDF 252
ISPKTC+Y WLD
Sbjct: 296 RDGAAISPKTCIYMKDWLDL 315
>gi|426240919|ref|XP_004014341.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Ovis
aries]
gi|296481393|tpg|DAA23508.1| TPA: DNA-directed RNA polymerase III subunit RPC6 [Bos taurus]
gi|440911603|gb|ELR61252.1| DNA-directed RNA polymerase III subunit RPC6 [Bos grunniens mutus]
Length = 316
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 132/259 (50%), Gaps = 27/259 (10%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 66 LRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 122
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 123 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 182
Query: 132 QCLKQI-IKLKVATLEGISDSIKRSGAF----------------KVDLTKQQIEEIVRAV 174
QC K + K + A + I+R+ +F KV+L+ + IE I+ +
Sbjct: 183 QCFKFLQTKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTL 242
Query: 175 VLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCT 233
+ D ++ M + + G ++ Y+ VS P TG PCG+CP + C
Sbjct: 243 IYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVSPII----PPTG-LVRAPCGLCPVFDDCH 297
Query: 234 PDGVISPKTCVYYTKWLDF 252
G ISP C+Y T+WL+F
Sbjct: 298 EGGEISPSNCIYMTEWLEF 316
>gi|348581574|ref|XP_003476552.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Cavia
porcellus]
Length = 316
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 132/259 (50%), Gaps = 27/259 (10%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 66 LRSNAGLLYRIKDSQNAGKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 122
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 123 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 182
Query: 132 QCLKQI-IKLKVATLEGISDSIKRSGAF----------------KVDLTKQQIEEIVRAV 174
QC K + K + A + I+R+ +F KV+L+ + IE I+ +
Sbjct: 183 QCFKFLQSKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTL 242
Query: 175 VLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCT 233
+ D ++ M + + G ++ Y+ VS P TG PCG+CP + C
Sbjct: 243 IYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVSPIL----PPTG-LVRAPCGLCPVFDDCH 297
Query: 234 PDGVISPKTCVYYTKWLDF 252
G ISP C+Y T+WL+F
Sbjct: 298 EGGEISPSNCIYMTEWLEF 316
>gi|326914992|ref|XP_003203806.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Meleagris gallopavo]
Length = 314
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 131/261 (50%), Gaps = 31/261 (11%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L SG+ R + NA +D E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 64 LRSSSGLLYRIKESQNASKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 120
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 121 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 180
Query: 132 QCLKQIIKLKVATLEGISDS-IKRSGAF----------------KVDLTKQQIEEIVRAV 174
QC K + A E + I+R+ +F KV+L+ + IE I+ +
Sbjct: 181 QCFKFLQSKAEAARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTL 240
Query: 175 VLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASV--PCGVCPQINF 231
+ D ++ M + + G ++ Y+ VS P + V PCG+CP +
Sbjct: 241 IYDGKVEMTIIAAKEGTVGSVDGQMKLYRAVS-------PLIQPTGLVRTPCGLCPVFDD 293
Query: 232 CTPDGVISPKTCVYYTKWLDF 252
C G ISP C+Y T+WL+F
Sbjct: 294 CHEGGEISPSNCIYMTEWLEF 314
>gi|348538120|ref|XP_003456540.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Oreochromis niloticus]
Length = 316
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 124/235 (52%), Gaps = 26/235 (11%)
Query: 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKG 95
+ E+L+Y +I + + GIW+RD++ K NLP + K +K+L++K LIK V ++
Sbjct: 90 NQEKLVYQIIE-DAGNKGIWSRDIR--FKSNLPLTEINKILKNLESKKLIKAVKSVAASK 146
Query: 96 KKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKR 154
KK M +P + ++GGAWYS+ ++EF++V+ QC K + K + A S ++R
Sbjct: 147 KKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAEAARDSKQSPMVQR 206
Query: 155 SGAF----------------KVDLTKQQIEEIVRAVVLDNQI-MEVKSNGSGEFTNIPVG 197
+ +F KVDL+ IE I+ ++ D ++ M V + G ++
Sbjct: 207 NSSFATSHEVWKYICELGISKVDLSMDDIETILNTLIYDGKVEMTVIAAKEGTVGSVDGQ 266
Query: 198 KVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
Y+ V+ +P TG PCG+CP + C G ISP TC+Y ++WLDF
Sbjct: 267 MKLYRGVN---AIIQP-TG-LVKTPCGLCPVFDDCHEGGEISPSTCIYMSEWLDF 316
>gi|291388976|ref|XP_002710999.1| PREDICTED: DNA-directed RNA polymerase III 39 kDa polypeptide F
[Oryctolagus cuniculus]
Length = 316
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 132/259 (50%), Gaps = 27/259 (10%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 66 LRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 122
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 123 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 182
Query: 132 QCLKQI-IKLKVATLEGISDSIKRSGAF----------------KVDLTKQQIEEIVRAV 174
QC K + K + A + I+R+ +F KV+L+ + IE I+ +
Sbjct: 183 QCFKFLQSKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTL 242
Query: 175 VLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCT 233
+ D ++ M + + G ++ Y+ VS P TG PCG+CP + C
Sbjct: 243 IYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVSPII----PPTG-LVRAPCGLCPVFDDCH 297
Query: 234 PDGVISPKTCVYYTKWLDF 252
G ISP C+Y T+WL+F
Sbjct: 298 EGGEISPSNCIYMTEWLEF 316
>gi|344280110|ref|XP_003411828.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Loxodonta africana]
Length = 316
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 131/259 (50%), Gaps = 27/259 (10%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 66 LRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 122
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 123 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 182
Query: 132 QCLKQI-IKLKVATLEGISDSIKRSGAF----------------KVDLTKQQIEEIVRAV 174
QC K + K + A + I+R+ +F KV+L+ + IE I+ +
Sbjct: 183 QCFKFLQTKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTL 242
Query: 175 VLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCT 233
+ D ++ M + + G ++ Y+ VS P TG PCG+CP + C
Sbjct: 243 IYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVSPII----PPTG-LVRAPCGLCPVFDDCH 297
Query: 234 PDGVISPKTCVYYTKWLDF 252
G ISP C+Y T+WL F
Sbjct: 298 EGGEISPSNCIYMTEWLQF 316
>gi|386781237|ref|NP_001247594.1| DNA-directed RNA polymerase III subunit RPC6 [Macaca mulatta]
gi|402883312|ref|XP_003905166.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Papio
anubis]
gi|355563390|gb|EHH19952.1| DNA-directed RNA polymerase III subunit RPC6 [Macaca mulatta]
gi|355784723|gb|EHH65574.1| DNA-directed RNA polymerase III subunit RPC6 [Macaca fascicularis]
gi|380783835|gb|AFE63793.1| DNA-directed RNA polymerase III subunit RPC6 [Macaca mulatta]
gi|383410145|gb|AFH28286.1| DNA-directed RNA polymerase III subunit RPC6 [Macaca mulatta]
Length = 316
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 132/259 (50%), Gaps = 27/259 (10%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 66 LRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 122
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 123 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 182
Query: 132 QCLKQI-IKLKVATLEGISDSIKRSGAF----------------KVDLTKQQIEEIVRAV 174
QC K + K + A + I+R+ +F KV+L+ + IE I+ +
Sbjct: 183 QCFKFLQSKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTL 242
Query: 175 VLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCT 233
+ D ++ M + + G ++ Y+ VS P TG PCG+CP + C
Sbjct: 243 IYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVSPII----PPTG-LVRAPCGLCPVFDDCH 297
Query: 234 PDGVISPKTCVYYTKWLDF 252
G ISP C+Y T+WL+F
Sbjct: 298 EGGEISPSNCIYMTEWLEF 316
>gi|84000271|ref|NP_001033237.1| DNA-directed RNA polymerase III subunit RPC6 [Bos taurus]
gi|110816413|sp|Q2T9S3.1|RPC6_BOVIN RecName: Full=DNA-directed RNA polymerase III subunit RPC6;
Short=RNA polymerase III subunit C6; AltName:
Full=DNA-directed RNA polymerase III subunit F
gi|83405748|gb|AAI11293.1| Polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa [Bos
taurus]
Length = 316
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 132/259 (50%), Gaps = 27/259 (10%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 66 LRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 122
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 123 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 182
Query: 132 QCLKQII-KLKVATLEGISDSIKRSGAF----------------KVDLTKQQIEEIVRAV 174
QC K + K + A + I+R+ +F KV+L+ + IE I+ +
Sbjct: 183 QCFKFLQNKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTL 242
Query: 175 VLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCT 233
+ D ++ M + + G ++ Y+ VS P TG PCG+CP + C
Sbjct: 243 IYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVSPII----PPTG-LVRAPCGLCPVFDDCH 297
Query: 234 PDGVISPKTCVYYTKWLDF 252
G ISP C+Y T+WL+F
Sbjct: 298 EGGEISPSNCIYMTEWLEF 316
>gi|281352669|gb|EFB28253.1| hypothetical protein PANDA_015203 [Ailuropoda melanoleuca]
Length = 296
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 132/259 (50%), Gaps = 27/259 (10%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 46 LRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 102
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 103 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 162
Query: 132 QCLKQI-IKLKVATLEGISDSIKRSGAF----------------KVDLTKQQIEEIVRAV 174
QC K + K + A + I+R+ +F KV+L+ + IE I+ +
Sbjct: 163 QCFKFLQTKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTL 222
Query: 175 VLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCT 233
+ D ++ M + + G ++ Y+ V+ P TG PCG+CP + C
Sbjct: 223 IYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPII----PPTG-LVRAPCGLCPVFDDCH 277
Query: 234 PDGVISPKTCVYYTKWLDF 252
G ISP C+Y T+WL+F
Sbjct: 278 EGGEISPSNCIYMTEWLEF 296
>gi|354468114|ref|XP_003496512.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Cricetulus griseus]
Length = 316
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 132/259 (50%), Gaps = 27/259 (10%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 66 LRSNTGLLYRIKETQNAGKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 122
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 123 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 182
Query: 132 QCLKQI-IKLKVATLEGISDSIKRSGAF----------------KVDLTKQQIEEIVRAV 174
QC K + K + A + I+R+ +F KV+L+ + IE I+ +
Sbjct: 183 QCFKFLQTKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTL 242
Query: 175 VLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCT 233
+ D ++ M + + G ++ Y+ V+ P TG PCG+CP + C
Sbjct: 243 IYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPIL----PPTG-LVRAPCGLCPVFDDCH 297
Query: 234 PDGVISPKTCVYYTKWLDF 252
G ISP C+Y T+WL+F
Sbjct: 298 EGGEISPSNCIYMTEWLEF 316
>gi|417398858|gb|JAA46462.1| Putative rna polymerase iii subunit c34 [Desmodus rotundus]
Length = 316
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 133/259 (51%), Gaps = 27/259 (10%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTDH-ERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D+ E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 66 LRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 122
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 123 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 182
Query: 132 QCLKQI-IKLKVATLEGISDSIKRSGAF----------------KVDLTKQQIEEIVRAV 174
QC K + K + A + I+R+ +F KV+L+ + IE I+ +
Sbjct: 183 QCFKFLQTKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTL 242
Query: 175 VLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCT 233
+ D ++ M + + G ++ Y+ V+ P TG PCG+CP + C
Sbjct: 243 IYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPII----PPTG-LVRAPCGLCPVFDDCH 297
Query: 234 PDGVISPKTCVYYTKWLDF 252
G ISP C+Y T+WL+F
Sbjct: 298 EGGEISPSNCIYMTEWLEF 316
>gi|327270311|ref|XP_003219933.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Anolis carolinensis]
Length = 310
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 82/268 (30%), Positives = 128/268 (47%), Gaps = 45/268 (16%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L SG+ R + NA +D E+L+Y +I + + GIWTRD++ K NLP
Sbjct: 60 LRSSSGLLYRIKESQNAGKMKGSDNQEKLVYQIIE-DAGNKGIWTRDIR--YKSNLPLTE 116
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 117 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 176
Query: 132 QCLKQI-IKLKVATLEGISDSIKRSGAF----------------KVDLTKQQIEEIVRAV 174
QC K + K + A + I+R+ +F KV+L+ + IE I+ +
Sbjct: 177 QCFKFLQTKAEAARDSKQNPMIQRNSSFASSHEVWKYISELGVSKVELSMEDIETILNTL 236
Query: 175 VLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSAS----------VPCG 224
+ D G E T I K + G G K + + VPCG
Sbjct: 237 IYD---------GKVEMTIIAA-----KEATAGSVDGRMKLYRAVNPIIQPTGLIRVPCG 282
Query: 225 VCPQINFCTPDGVISPKTCVYYTKWLDF 252
+CP + C G ISP C+Y T+WL F
Sbjct: 283 LCPVFDDCHEGGEISPSNCIYMTEWLQF 310
>gi|390339281|ref|XP_785983.3| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
isoform 1 [Strongylocentrotus purpuratus]
Length = 311
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 123/237 (51%), Gaps = 32/237 (13%)
Query: 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKG 95
+ ERL+Y +I + + GIWTRD++ LK NL + K +K+L+++ LIK V ++
Sbjct: 87 NQERLVYQIIEQSG-NKGIWTRDIR--LKSNLQLTQLNKILKNLESRKLIKAVKSVGAAR 143
Query: 96 KKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGIS--DSIK 153
KK M P ++GG WYS+ ++EF++V+ QC K ++ KV ++ + +K
Sbjct: 144 KKAYMLFNLTPDPSVTGGTWYSDQEFESEFVEVLNHQCFK-FLQQKVESVSALQLDPLLK 202
Query: 154 RSGAF----------------KVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVG 197
R+ +F KVDL+ I I+ ++ D ++ S G+G ++
Sbjct: 203 RNRSFVSPEEVWKFITELRISKVDLSVDDINTILNTLIYDGKVEMTISAGAGTSSSDSSS 262
Query: 198 KVCYKNVSKGGGGGEPKTGSSASV--PCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
K+ Y+ + +P T + + PCGVCP N C G ISP TC+Y +W+D+
Sbjct: 263 KL-YRAI-------QPLTQPTGLMRSPCGVCPVFNQCYEGGAISPSTCIYMKEWMDY 311
>gi|313661432|ref|NP_001186330.1| DNA-directed RNA polymerase III subunit RPC6 [Gallus gallus]
Length = 314
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 131/261 (50%), Gaps = 31/261 (11%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 64 LRSNAGLLYRIKESQNASKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 120
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 121 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 180
Query: 132 QCLKQIIKLKVATLEGISDS-IKRSGAF----------------KVDLTKQQIEEIVRAV 174
QC K + A E + I+R+ +F KV+L+ + IE I+ +
Sbjct: 181 QCFKFLQSKAEAARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTL 240
Query: 175 VLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASV--PCGVCPQINF 231
+ D ++ M + + G ++ Y+ VS P + V PCG+CP +
Sbjct: 241 IYDGKVEMTIIAAKEGTVGSVDGQMKLYRAVS-------PLIQPTGLVRTPCGLCPVFDD 293
Query: 232 CTPDGVISPKTCVYYTKWLDF 252
C G ISP C+Y T+WL+F
Sbjct: 294 CHEGGEISPSNCIYMTEWLEF 314
>gi|345790127|ref|XP_857138.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform 2
[Canis lupus familiaris]
Length = 316
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 132/259 (50%), Gaps = 27/259 (10%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 66 LRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 122
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 123 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 182
Query: 132 QCLKQI-IKLKVATLEGISDSIKRSGAF----------------KVDLTKQQIEEIVRAV 174
QC K + K + A + I+R+ +F KV+L+ + IE I+ +
Sbjct: 183 QCFKFLQTKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTL 242
Query: 175 VLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCT 233
+ D ++ M + + G ++ Y+ V+ P TG PCG+CP + C
Sbjct: 243 IYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPII----PPTG-LVRAPCGLCPVFDDCH 297
Query: 234 PDGVISPKTCVYYTKWLDF 252
G ISP C+Y T+WL+F
Sbjct: 298 EGGEISPSNCIYMTEWLEF 316
>gi|449275236|gb|EMC84159.1| DNA-directed RNA polymerase III subunit RPC6 [Columba livia]
Length = 314
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 131/261 (50%), Gaps = 31/261 (11%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 64 LRSNAGLLYRIKESQNASKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 120
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 121 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 180
Query: 132 QCLKQIIKLKVATLEGISDS-IKRSGAF----------------KVDLTKQQIEEIVRAV 174
QC K + A E + I+R+ +F KV+L+ + IE I+ +
Sbjct: 181 QCFKFLQSKAEAARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTL 240
Query: 175 VLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASV--PCGVCPQINF 231
+ D ++ M + + G ++ Y+ VS P + V PCG+CP +
Sbjct: 241 IYDGKVEMTIIAAKEGTVGSVDGQMKLYRAVS-------PLIQPTGLVRTPCGLCPVFDD 293
Query: 232 CTPDGVISPKTCVYYTKWLDF 252
C G ISP C+Y T+WL+F
Sbjct: 294 CHEGGEISPSNCIYMTEWLEF 314
>gi|301780510|ref|XP_002925671.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Ailuropoda melanoleuca]
gi|410954415|ref|XP_003983860.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Felis
catus]
Length = 316
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 132/259 (50%), Gaps = 27/259 (10%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 66 LRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 122
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 123 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 182
Query: 132 QCLKQI-IKLKVATLEGISDSIKRSGAF----------------KVDLTKQQIEEIVRAV 174
QC K + K + A + I+R+ +F KV+L+ + IE I+ +
Sbjct: 183 QCFKFLQTKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTL 242
Query: 175 VLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCT 233
+ D ++ M + + G ++ Y+ V+ P TG PCG+CP + C
Sbjct: 243 IYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPII----PPTG-LVRAPCGLCPVFDDCH 297
Query: 234 PDGVISPKTCVYYTKWLDF 252
G ISP C+Y T+WL+F
Sbjct: 298 EGGEISPSNCIYMTEWLEF 316
>gi|431894136|gb|ELK03936.1| DNA-directed RNA polymerase III subunit RPC6 [Pteropus alecto]
Length = 316
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 132/259 (50%), Gaps = 27/259 (10%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 66 LRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 122
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 123 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 182
Query: 132 QCLKQI-IKLKVATLEGISDSIKRSGAF----------------KVDLTKQQIEEIVRAV 174
QC K + K + A + I+R+ +F KV+L+ + IE I+ +
Sbjct: 183 QCFKFLQTKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTL 242
Query: 175 VLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCT 233
+ D ++ M + + G ++ Y+ V+ P TG PCG+CP + C
Sbjct: 243 IYDGKVEMTIITAKEGTVGSVDGHMKLYRAVNPII----PPTG-LVRAPCGLCPVFDDCH 297
Query: 234 PDGVISPKTCVYYTKWLDF 252
G ISP C+Y T+WL+F
Sbjct: 298 EGGEISPSNCIYMTEWLEF 316
>gi|114681157|ref|XP_001141875.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform 2
[Pan troglodytes]
gi|395751982|ref|XP_003779338.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform 2
[Pongo abelii]
gi|397478658|ref|XP_003810659.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform 2
[Pan paniscus]
gi|426391057|ref|XP_004061903.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform 2
[Gorilla gorilla gorilla]
gi|116284007|gb|AAH16761.1| POLR3F protein [Homo sapiens]
gi|119630646|gb|EAX10241.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa, isoform
CRA_c [Homo sapiens]
Length = 275
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 133/259 (51%), Gaps = 27/259 (10%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTDH-ERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D+ E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 25 LRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 81
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 82 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 141
Query: 132 QCLKQI-IKLKVATLEGISDSIKRSGAF----------------KVDLTKQQIEEIVRAV 174
QC K + K + A + I+R+ +F KV+L+ + IE I+ +
Sbjct: 142 QCFKFLQSKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTL 201
Query: 175 VLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCT 233
+ D ++ M + + G ++ Y+ V+ P TG PCG+CP + C
Sbjct: 202 IYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPII----PPTG-LVRAPCGLCPVFDDCH 256
Query: 234 PDGVISPKTCVYYTKWLDF 252
G ISP C+Y T+WL+F
Sbjct: 257 EGGEISPSNCIYMTEWLEF 275
>gi|42542458|gb|AAH66497.1| Polr3f protein [Danio rerio]
Length = 314
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 131/261 (50%), Gaps = 31/261 (11%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L SG+ R + +A +D E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 64 LRNSSGLLYRLKDTQSASKVKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 120
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 121 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 180
Query: 132 QCLKQI-IKLKVATLEGISDSIKRSGAF----------------KVDLTKQQIEEIVRAV 174
QC K + K + A S ++R+ +F KVDL+ + IE I+ +
Sbjct: 181 QCFKFLQSKAETARDSKQSPMVQRNSSFATSHEVWKYICELGISKVDLSMEDIETILNTL 240
Query: 175 VLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASV--PCGVCPQINF 231
+ D ++ M + + G ++ Y+ V+ P + V PCG+CP +
Sbjct: 241 IFDGKVEMTIIAAKEGTVGSVDGQMKLYRGVN-------PIIQPTGLVKTPCGLCPVFDD 293
Query: 232 CTPDGVISPKTCVYYTKWLDF 252
C G ISP CVY +WLDF
Sbjct: 294 CHEGGEISPSNCVYMAEWLDF 314
>gi|194224116|ref|XP_001490686.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC6-like [Equus caballus]
Length = 316
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 132/259 (50%), Gaps = 27/259 (10%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 66 LRSNTGLLYRIKDSQNAGKXKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 122
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 123 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 182
Query: 132 QCLKQI-IKLKVATLEGISDSIKRSGAF----------------KVDLTKQQIEEIVRAV 174
QC K + K + A + I+R+ +F KV+L+ + IE I+ +
Sbjct: 183 QCFKFLQSKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTL 242
Query: 175 VLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCT 233
+ D ++ M + + G ++ Y+ V+ P TG PCG+CP + C
Sbjct: 243 IYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPII----PPTG-LVRAPCGLCPVFDDCH 297
Query: 234 PDGVISPKTCVYYTKWLDF 252
G ISP C+Y T+WL+F
Sbjct: 298 EGGEISPSNCIYMTEWLEF 316
>gi|296200276|ref|XP_002747521.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Callithrix
jacchus]
gi|403283636|ref|XP_003933219.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Saimiri
boliviensis boliviensis]
Length = 316
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 131/259 (50%), Gaps = 27/259 (10%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 66 LRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 122
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 123 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 182
Query: 132 QCLKQIIKLKVATLEGISDS-IKRSGAF----------------KVDLTKQQIEEIVRAV 174
QC K + A E + I+R+ +F KV+L+ + IE I+ +
Sbjct: 183 QCFKFLQSKAEAARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTL 242
Query: 175 VLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCT 233
+ D ++ M + + G ++ Y+ V+ P TG PCG+CP + C
Sbjct: 243 IYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPII----PPTG-LVRAPCGLCPVFDDCH 297
Query: 234 PDGVISPKTCVYYTKWLDF 252
G ISP C+Y T+WL+F
Sbjct: 298 EGGEISPSNCIYMTEWLEF 316
>gi|47210380|emb|CAF95575.1| unnamed protein product [Tetraodon nigroviridis]
Length = 275
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 121/235 (51%), Gaps = 26/235 (11%)
Query: 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKG 95
+ E+L+Y +I + + GIW+RD++ K NLP + K +K+L+ K LIK V ++
Sbjct: 49 NQEKLVYQIIE-DAGNKGIWSRDIR--FKSNLPLTEINKILKNLEGKKLIKAVKSVAASK 105
Query: 96 KKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEG-ISDSIKR 154
KK M +P + ++GGAWYS+ ++EF++V+ QC K + A+ E S ++R
Sbjct: 106 KKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAEASREAKHSPMVQR 165
Query: 155 SGAF----------------KVDLTKQQIEEIVRAVVLDNQI-MEVKSNGSGEFTNIPVG 197
+ +F KVDL+ IE I+ ++ D + M V + G ++ G
Sbjct: 166 NSSFATSHEVWKYICELGISKVDLSMDDIETILNTLIYDGKAEMTVIAAKEGTVGSVD-G 224
Query: 198 KVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
+V + +G TG PCG+CP + C G ISP TC+Y +WLDF
Sbjct: 225 QV---KLYRGVNAVLQPTG-LVRTPCGLCPVFDDCHQGGEISPSTCIYVAEWLDF 275
>gi|157138209|ref|XP_001664177.1| DNA-directed RNA polymerase III, 34kD-subunit, putative [Aedes
aegypti]
gi|108880662|gb|EAT44887.1| AAEL003786-PA [Aedes aegypti]
Length = 328
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 122/259 (47%), Gaps = 38/259 (14%)
Query: 13 LAKGSGMSKR-KRPD--SNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPD 69
L KG+ + R K P S AP D + + E++IY++I + GIW RD++ +K NL
Sbjct: 88 LKKGATLIYRLKDPSKKSTAPKD-IDNEEKIIYNIIEEGG-NKGIWIRDIR--VKSNLIM 143
Query: 70 NIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVV 129
+ K +K L+NK LIK V +++ KK M EP + I+GGAWY + + EF+ V+
Sbjct: 144 TQLNKVLKQLENKKLIKAVKSVNASKKKVYMLYNLEPDRSITGGAWYQDQDFEAEFVDVL 203
Query: 130 KSQCLK-----------------QIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVR 172
QCL+ + KL ++ + I G K+ L + +E I++
Sbjct: 204 NQQCLRFLRMKRESAKECRDGPLAVQKLSYCSVGDVHKFISDLGISKISLDEDDLETILK 263
Query: 173 AVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFC 232
VV D G E GK YK + + +PCG+CP I C
Sbjct: 264 TVVYD---------GKAESIPTAEGKYLYKAIE-----APLSSPGLVQMPCGICPVIRNC 309
Query: 233 TPDGVISPKTCVYYTKWLD 251
+ G I+PK C Y +WLD
Sbjct: 310 SDCGAITPKLCSYINEWLD 328
>gi|351715903|gb|EHB18822.1| DNA-directed RNA polymerase III subunit RPC6 [Heterocephalus
glaber]
Length = 316
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 132/261 (50%), Gaps = 31/261 (11%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 66 LRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 122
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 123 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 182
Query: 132 QCLKQI-IKLKVATLEGISDSIKRSGAF----------------KVDLTKQQIEEIVRAV 174
QC K + K + A + I+R+ +F KV+L+ + IE I+ +
Sbjct: 183 QCFKFLQSKAETARESKQNPVIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTL 242
Query: 175 VLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASV--PCGVCPQINF 231
+ D ++ M + + G ++ Y+ VS P + V PCG+CP +
Sbjct: 243 IYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVS-------PIIAPTGLVRSPCGLCPVFDD 295
Query: 232 CTPDGVISPKTCVYYTKWLDF 252
C G ISP C+Y T+WL+F
Sbjct: 296 CHEGGEISPSNCIYMTEWLEF 316
>gi|224047392|ref|XP_002198916.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6
[Taeniopygia guttata]
Length = 314
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 132/261 (50%), Gaps = 31/261 (11%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 64 LRSSAGLLYRIKDSQNASKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 120
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 121 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 180
Query: 132 QCLKQI-IKLKVATLEGISDSIKRSGAF----------------KVDLTKQQIEEIVRAV 174
QC K + K + A + I+R+ +F KV+L+ + IE I+ +
Sbjct: 181 QCFKFLQSKAEAARDSKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTL 240
Query: 175 VLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASV--PCGVCPQINF 231
+ D ++ M + + G ++ Y+ VS P + V PCG+CP +
Sbjct: 241 IYDGKVEMTIIAAKEGTVGSVDGQMRLYRAVS-------PLIQPTGLVRTPCGLCPVFDD 293
Query: 232 CTPDGVISPKTCVYYTKWLDF 252
C G ISP C+Y T+WL+F
Sbjct: 294 CHEGGEISPSNCIYMTEWLEF 314
>gi|33598952|ref|NP_006457.2| DNA-directed RNA polymerase III subunit RPC6 [Homo sapiens]
gi|297706431|ref|XP_002830042.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform 1
[Pongo abelii]
gi|332238168|ref|XP_003268274.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Nomascus
leucogenys]
gi|332858027|ref|XP_003316891.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Pan
troglodytes]
gi|397478656|ref|XP_003810658.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform 1
[Pan paniscus]
gi|426391055|ref|XP_004061902.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform 1
[Gorilla gorilla gorilla]
gi|20139728|sp|Q9H1D9.1|RPC6_HUMAN RecName: Full=DNA-directed RNA polymerase III subunit RPC6;
Short=RNA polymerase III subunit C6; AltName:
Full=DNA-directed RNA polymerase III subunit F; AltName:
Full=RNA polymerase III 39 kDa subunit; Short=RPC39
gi|15214899|gb|AAH12588.1| Polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa [Homo
sapiens]
gi|119630645|gb|EAX10240.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa, isoform
CRA_b [Homo sapiens]
gi|123984551|gb|ABM83621.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa
[synthetic construct]
gi|123999175|gb|ABM87168.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa
[synthetic construct]
gi|158255220|dbj|BAF83581.1| unnamed protein product [Homo sapiens]
gi|208967094|dbj|BAG73561.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa
[synthetic construct]
gi|410211180|gb|JAA02809.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa [Pan
troglodytes]
gi|410261662|gb|JAA18797.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa [Pan
troglodytes]
gi|410293744|gb|JAA25472.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa [Pan
troglodytes]
gi|410330073|gb|JAA33983.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa [Pan
troglodytes]
Length = 316
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 132/259 (50%), Gaps = 27/259 (10%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 66 LRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 122
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 123 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 182
Query: 132 QCLKQI-IKLKVATLEGISDSIKRSGAF----------------KVDLTKQQIEEIVRAV 174
QC K + K + A + I+R+ +F KV+L+ + IE I+ +
Sbjct: 183 QCFKFLQSKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTL 242
Query: 175 VLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCT 233
+ D ++ M + + G ++ Y+ V+ P TG PCG+CP + C
Sbjct: 243 IYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPII----PPTG-LVRAPCGLCPVFDDCH 297
Query: 234 PDGVISPKTCVYYTKWLDF 252
G ISP C+Y T+WL+F
Sbjct: 298 EGGEISPSNCIYMTEWLEF 316
>gi|62898157|dbj|BAD97018.1| DNA-directed RNA polymerase III 39 kDa polypeptide F variant [Homo
sapiens]
Length = 316
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 132/259 (50%), Gaps = 27/259 (10%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 66 LRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIE-DAGNKGIWSRDVR--YKSNLPLTE 122
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 123 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 182
Query: 132 QCLKQI-IKLKVATLEGISDSIKRSGAF----------------KVDLTKQQIEEIVRAV 174
QC K + K + A + I+R+ +F KV+L+ + IE I+ +
Sbjct: 183 QCFKFLQSKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTL 242
Query: 175 VLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCT 233
+ D ++ M + + G ++ Y+ V+ P TG PCG+CP + C
Sbjct: 243 IYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPII----PPTG-LVRAPCGLCPVFDDCH 297
Query: 234 PDGVISPKTCVYYTKWLDF 252
G ISP C+Y T+WL+F
Sbjct: 298 EGGEISPSNCIYMTEWLEF 316
>gi|27754160|ref|NP_084039.2| DNA-directed RNA polymerase III subunit RPC6 [Mus musculus]
gi|20139517|sp|Q921X6.1|RPC6_MOUSE RecName: Full=DNA-directed RNA polymerase III subunit RPC6;
Short=RNA polymerase III subunit C6; AltName:
Full=DNA-directed RNA polymerase III subunit F
gi|14318737|gb|AAH09159.1| Polymerase (RNA) III (DNA directed) polypeptide F [Mus musculus]
gi|26331194|dbj|BAC29327.1| unnamed protein product [Mus musculus]
gi|26345468|dbj|BAC36385.1| unnamed protein product [Mus musculus]
gi|74194833|dbj|BAE26008.1| unnamed protein product [Mus musculus]
gi|126035615|gb|ABN72532.1| DNA-directed RNA polymerase III polypeptide F [Mus spretus]
gi|148696514|gb|EDL28461.1| polymerase (RNA) III (DNA directed) polypeptide F, isoform CRA_a
[Mus musculus]
Length = 316
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 131/259 (50%), Gaps = 27/259 (10%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 66 LRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 122
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 123 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 182
Query: 132 QCLKQI-IKLKVATLEGISDSIKRSGAF----------------KVDLTKQQIEEIVRAV 174
QC K + K + A + I+R+ +F KV+L+ + IE I+ +
Sbjct: 183 QCFKFLQSKAETARESKQNPVIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTL 242
Query: 175 VLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCT 233
+ D ++ M + + G ++ Y+ V+ P TG PCG+CP C
Sbjct: 243 IYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPIL----PPTG-VVRAPCGLCPVFEDCH 297
Query: 234 PDGVISPKTCVYYTKWLDF 252
G ISP C+Y T+WL+F
Sbjct: 298 EGGEISPSNCIYMTEWLEF 316
>gi|26325236|dbj|BAC26372.1| unnamed protein product [Mus musculus]
Length = 316
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 131/259 (50%), Gaps = 27/259 (10%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 66 LRSNTGLLYRIKDSRNAGKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 122
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 123 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 182
Query: 132 QCLKQI-IKLKVATLEGISDSIKRSGAF----------------KVDLTKQQIEEIVRAV 174
QC K + K + A + I+R+ +F KV+L+ + IE I+ +
Sbjct: 183 QCFKFLQSKAETARESKQNPVIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTL 242
Query: 175 VLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCT 233
+ D ++ M + + G ++ Y+ V+ P TG PCG+CP C
Sbjct: 243 IYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPIL----PPTG-VVRAPCGLCPVFEDCH 297
Query: 234 PDGVISPKTCVYYTKWLDF 252
G ISP C+Y T+WL+F
Sbjct: 298 EGGEISPSNCIYMTEWLEF 316
>gi|395851941|ref|XP_003798506.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Otolemur
garnettii]
Length = 316
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 132/259 (50%), Gaps = 27/259 (10%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 66 LRSSTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 122
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 123 INKILKNLESKKLIKAVKSVAASKKKVYMLYNMQPDRSVTGGAWYSDHDFESEFVEVLNQ 182
Query: 132 QCLKQI-IKLKVATLEGISDSIKRSGAF----------------KVDLTKQQIEEIVRAV 174
QC K + K + A + I+R+ +F KV+L+ + IE I+ +
Sbjct: 183 QCFKFLQTKAETARESKQNPVIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTL 242
Query: 175 VLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCT 233
+ D ++ M + + G ++ Y+ V+ P TG PCG+CP + C
Sbjct: 243 IYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPII----PPTG-LVRAPCGLCPVFDDCH 297
Query: 234 PDGVISPKTCVYYTKWLDF 252
G ISP C+Y T+WL++
Sbjct: 298 EGGEISPSNCIYMTEWLEY 316
>gi|41055399|ref|NP_957481.1| DNA-directed RNA polymerase III subunit RPC6 [Danio rerio]
gi|30353810|gb|AAH51782.1| Polymerase (RNA) III (DNA directed) polypeptide F [Danio rerio]
Length = 314
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 130/261 (49%), Gaps = 31/261 (11%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L SG+ R + +A +D E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 64 LRNSSGLLYRLKDTQSASKVKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 120
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++ +
Sbjct: 121 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEALNQ 180
Query: 132 QCLKQI-IKLKVATLEGISDSIKRSGAF----------------KVDLTKQQIEEIVRAV 174
QC K + K + A S ++R+ +F KVDL+ + IE I+ +
Sbjct: 181 QCFKFLQSKAETARDSKQSPMVQRNSSFATSHEVWKYICELGISKVDLSMEDIETILNTL 240
Query: 175 VLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASV--PCGVCPQINF 231
+ D ++ M + + G ++ Y+ V+ P + V PCG+CP +
Sbjct: 241 IFDGKVEMTIIAAKEGTVGSVDGQMKLYRGVN-------PIIQPTGLVKTPCGLCPVFDD 293
Query: 232 CTPDGVISPKTCVYYTKWLDF 252
C G ISP CVY +WLDF
Sbjct: 294 CHEGGEISPSNCVYMAEWLDF 314
>gi|157821329|ref|NP_001101254.1| DNA-directed RNA polymerase III subunit RPC6 [Rattus norvegicus]
gi|149041225|gb|EDL95158.1| polymerase (RNA) III (DNA directed) polypeptide F (predicted),
isoform CRA_a [Rattus norvegicus]
Length = 371
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 132/259 (50%), Gaps = 27/259 (10%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 121 LRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 177
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 178 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 237
Query: 132 QCLKQI-IKLKVATLEGISDSIKRSGAF----------------KVDLTKQQIEEIVRAV 174
QC K + K + A + I+R+ +F KV+L+ + IE I+ +
Sbjct: 238 QCFKFLQSKAETARESKQNPVIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTL 297
Query: 175 VLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCT 233
+ D ++ M + + G ++ Y+ V+ P TG PCG+CP + C
Sbjct: 298 IYDGKVDMTIIAAKEGTVGSVDGHMKLYRAVNPIL----PPTG-LVRAPCGLCPVFDDCH 352
Query: 234 PDGVISPKTCVYYTKWLDF 252
G ISP C+Y T+WL+F
Sbjct: 353 EGGEISPSNCIYMTEWLEF 371
>gi|49618979|gb|AAT68074.1| RNA polymerase III 39kDa subunit [Danio rerio]
Length = 314
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 131/261 (50%), Gaps = 31/261 (11%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L SG+ R + +A +D E+L+Y +I + + GIW+RD++ K N+P
Sbjct: 64 LRNSSGLLYRLKDTQSASKVKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNVPLTE 120
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 121 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 180
Query: 132 QCLKQI-IKLKVATLEGISDSIKRSGAF----------------KVDLTKQQIEEIVRAV 174
QC K + K + A S ++R+ +F KVDL+ + IE I+ +
Sbjct: 181 QCFKFLQSKAETARDSKQSPMVQRNSSFATSHEVWKYICELGISKVDLSMEDIETILNTL 240
Query: 175 VLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASV--PCGVCPQINF 231
+ D ++ M + + G ++ Y+ V+ P + V PCG+CP +
Sbjct: 241 IFDGKVEMTIIAAKEGTVGSVDGQMKLYRGVN-------PIIQPTGLVKTPCGLCPVFDD 293
Query: 232 CTPDGVISPKTCVYYTKWLDF 252
C G ISP CVY +WLDF
Sbjct: 294 CHEGGEISPSNCVYMAEWLDF 314
>gi|350594676|ref|XP_003483946.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform 1
[Sus scrofa]
Length = 316
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 132/261 (50%), Gaps = 31/261 (11%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 66 LRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 122
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 123 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 182
Query: 132 QCLKQI-IKLKVATLEGISDSIKRSGAF----------------KVDLTKQQIEEIVRAV 174
QC K + K + A + I+R+ +F KV+L+ + IE I+ +
Sbjct: 183 QCFKFLQTKAETARESKQNPVIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTL 242
Query: 175 VLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASV--PCGVCPQINF 231
+ D ++ M + + G ++ Y+ V+ P + V PCG+CP +
Sbjct: 243 IYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVN-------PIISPTGLVRAPCGLCPVFDD 295
Query: 232 CTPDGVISPKTCVYYTKWLDF 252
C G ISP C+Y T+WL+F
Sbjct: 296 CHEGGEISPSNCIYMTEWLEF 316
>gi|198424749|ref|XP_002126762.1| PREDICTED: similar to Polr3f protein [Ciona intestinalis]
Length = 310
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 132/264 (50%), Gaps = 37/264 (14%)
Query: 11 LGLAKGS-GMSKR-KRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLP 68
L L KGS G+ R K P + + + E+L+Y +I S + GIWTR+++ K NL
Sbjct: 62 LELLKGSSGLIYRIKTPSAVGSISGVDNQEKLVYQIIES-AGNKGIWTREIR--YKCNLM 118
Query: 69 DNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKV 128
V K +K+L++K +IK V ++ +K M +P + ++GGAWYS+ ++EF++V
Sbjct: 119 LTEVNKILKNLESKKIIKAVKSVAAAKRKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEV 178
Query: 129 VKSQCLKQIIK------------------LKVATLEGISDSIKRSGAFKVDLTKQQIEEI 170
+ QC K + + A+ E + + I + G KV L+ + IE I
Sbjct: 179 LNQQCFKFLQQKCENAEKETTLSPTATNASSFASSEEVLEFISKLGISKVTLSPEDIETI 238
Query: 171 VRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEP--KTGSSASVPCGVCPQ 228
+ ++ D ++ + T +PV K + K +P +T A PC +CP
Sbjct: 239 LNTLIYDGKVQQ---------TVVPVANGESKKLFK---ALKPLIETTDFARTPCSLCPV 286
Query: 229 INFCTPDGVISPKTCVYYTKWLDF 252
N C P G ISP+ C+Y +W+++
Sbjct: 287 FNECQPGGEISPENCLYMDEWMEY 310
>gi|335775487|gb|AEH58588.1| DNA-directed RNA polymerase III subunit RPC-like protein [Equus
caballus]
Length = 230
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 123/235 (52%), Gaps = 26/235 (11%)
Query: 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKG 95
+ E+L+Y +I + + GIW+RD++ K NLP + K +K+L++K LIK V ++
Sbjct: 4 NQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASK 60
Query: 96 KKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKR 154
KK M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R
Sbjct: 61 KKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPMIQR 120
Query: 155 SGAF----------------KVDLTKQQIEEIVRAVVLDNQI-MEVKSNGSGEFTNIPVG 197
+ +F KV+L+ + IE I+ ++ D ++ M + + G ++
Sbjct: 121 NSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGH 180
Query: 198 KVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
Y+ V+ P TG PCG+CP + C G ISP C+Y T+WL+F
Sbjct: 181 MKLYRAVNPII----PPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 230
>gi|449666947|ref|XP_002169336.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Hydra
magnipapillata]
Length = 517
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 126/248 (50%), Gaps = 24/248 (9%)
Query: 22 RKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQN 81
RK+ +S + + E + ++ S + GIW RD++ K NLP V K +K+L++
Sbjct: 276 RKQKNSIFSAICSLNKEAFMSLIVYSLTVNSGIWIRDIR--FKCNLPMTQVNKVLKNLES 333
Query: 82 KSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQII-KL 140
K LIK V ++ KK M P ++GGAWYS+ + EF+ ++ QC K ++ KL
Sbjct: 334 KKLIKSVTSVGVSEKKVYMLYNMVPDTSVTGGAWYSDQDFEAEFVDILNQQCHKFLLQKL 393
Query: 141 KVATLEGISDSIKRSGAF----------------KVDLTKQQIEEIVRAVVLDNQI-MEV 183
+ A I ++R+ ++ KV LT + IE I+ ++ D M +
Sbjct: 394 QQAQEMKIDPLLQRNRSYASSHEVWKYISDLGISKVSLTIKDIETILSTLLYDGMAEMII 453
Query: 184 KSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTC 243
S+ S + NI G V K + + P TG +PCGVCP + C P G++SP+TC
Sbjct: 454 VSDSSMD--NIESG-VIQKKLYRAVKPLLPVTG-LMRIPCGVCPVVKNCYPGGLVSPQTC 509
Query: 244 VYYTKWLD 251
VY +WLD
Sbjct: 510 VYIKEWLD 517
>gi|318037614|ref|NP_001188039.1| DNA-directed RNA polymerase III subunit rpc6 [Ictalurus punctatus]
gi|308324663|gb|ADO29466.1| DNA-directed RNA polymerase III subunit rpc6 [Ictalurus punctatus]
Length = 314
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 122/236 (51%), Gaps = 28/236 (11%)
Query: 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKG 95
+ E+L+Y +I + + GIW+RD++ K NLP + K +K+L++K LIK V ++
Sbjct: 88 NQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASK 144
Query: 96 KKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKR 154
KK M +P + ++GGAWYS+ ++EF++V+ QC K + K + A S ++R
Sbjct: 145 KKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAEAARDSKQSPMVQR 204
Query: 155 SGAF----------------KVDLTKQQIEEIVRAVVLDNQI-MEVKSNGSGEFTNIPVG 197
+ +F KVDL+ + IE I+ ++ D ++ M + + G +
Sbjct: 205 NSSFATSYEVWKYICELGISKVDLSMEDIETILNTLIYDGKVEMTIIAAKEGTVGCVDGQ 264
Query: 198 KVCYKNV-SKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
Y+ V S G KT PCG+CP + C G ISP TC+Y +WLDF
Sbjct: 265 MKLYRGVNSIIQPTGLVKT------PCGLCPVFDDCHEGGEISPSTCIYMGEWLDF 314
>gi|126303656|ref|XP_001374149.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Monodelphis domestica]
Length = 316
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 123/237 (51%), Gaps = 30/237 (12%)
Query: 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKG 95
+ E+L+Y +I + + GIW+RD++ K NLP + K +K+L++K LIK V ++
Sbjct: 90 NQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASK 146
Query: 96 KKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKR 154
KK M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R
Sbjct: 147 KKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPMIQR 206
Query: 155 SGAF----------------KVDLTKQQIEEIVRAVVLDNQI-MEVKSNGSGEFTNIPVG 197
+ +F KV+L+ + IE I+ ++ D ++ M + + G ++
Sbjct: 207 NSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGH 266
Query: 198 KVCYKNVSKGGGGGEPKTGSSASV--PCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
Y+ VS P + V PCG+CP + C G ISP C+Y T+WL+F
Sbjct: 267 MKLYRAVS-------PIIQPTGLVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 316
>gi|294948682|ref|XP_002785842.1| DNA-directed RNA polymerases iii 39 Kd polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239899950|gb|EER17638.1| DNA-directed RNA polymerases iii 39 Kd polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 316
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 115/217 (52%), Gaps = 11/217 (5%)
Query: 39 RLIYDVIRSNKQDMGIWTRDM--KRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGK 96
R+IY +I+ GIW +D+ + ++ + VTK L+ + LIK+V ++ +K +
Sbjct: 80 RMIYKLIKMAGTQ-GIWNKDLATRANMEHRIASGSVTKICSQLEARRLIKKVTSVQHKSR 138
Query: 97 KHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQII-KLKVATLEGISDSIKRS 155
K M E EPSK++SGG WY +G LDT+ I+ ++ CL I + + T E + +
Sbjct: 139 KVWMLYELEPSKEVSGGNWYRDGRLDTDLIERLRQCCLDYITNQNRAVTCEDVHRYVVSQ 198
Query: 156 GAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKT 215
G + + ++I +++R++ LD IM V S +GE + K CY VS+ G
Sbjct: 199 GVSHITHSVEEIGDVLRSLELDRVIMVVPST-AGE----SIAKQCY--VSRPANLGLDYI 251
Query: 216 GSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
VPC CP + C G ++P+ C+Y +KWL+
Sbjct: 252 TRIVDVPCIACPVSSECVVGGRVNPEECLYLSKWLNL 288
>gi|226442700|ref|NP_001139930.1| DNA-directed RNA polymerase III subunit RPC6 [Salmo salar]
gi|221220164|gb|ACM08743.1| DNA-directed RNA polymerase III subunit RPC6 [Salmo salar]
Length = 314
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 123/236 (52%), Gaps = 28/236 (11%)
Query: 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKG 95
+ E+L+Y VI + + GIW+RD++ K NLP + K +K+L++K LIK V ++
Sbjct: 88 NQEKLVYQVIE-DAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASK 144
Query: 96 KKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKR 154
KK M +P + ++GGAWYS+ ++EF++V+ QC K + K +VA + ++R
Sbjct: 145 KKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAEVARDSKQNPMVQR 204
Query: 155 SGAF----------------KVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGK 198
+ +F KVDL+ + IE I+ ++ D ++ E+ + E T VG
Sbjct: 205 NSSFATSHEVWKYICELGISKVDLSMEDIETILNTLIYDGKV-EMTIIAAKEGT---VGS 260
Query: 199 VCYKNVSKGGGGGEPKTGSSASV--PCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
V K G P + V PCG+CP + C G ISP CVY +WLDF
Sbjct: 261 V--DGQMKLCRGVNPIIQPTGLVKAPCGLCPVFDDCHEGGEISPSNCVYMAEWLDF 314
>gi|291222494|ref|XP_002731250.1| PREDICTED: Polr3f protein-like [Saccoglossus kowalevskii]
Length = 309
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 129/249 (51%), Gaps = 30/249 (12%)
Query: 21 KRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQ 80
K K P +++ + E+LIY +I + GIW RD++ K NL V+K +++L+
Sbjct: 74 KLKDPQTSSKMKGSDNQEKLIYQIIEE-AGNKGIWIRDIR--YKSNLLMTQVSKILRNLE 130
Query: 81 NKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKL 140
+K LIK + ++ KK M +P + ++GGAWYS+ ++EF++V+ QC+K + +
Sbjct: 131 SKKLIKAIKSVGASKKKVYMLYNIDPDRSVTGGAWYSDQDFESEFVEVLNQQCMKFLHQT 190
Query: 141 KVATLEGISDSI-KRSGAF----------------KVDLTKQQIEEIVRAVVLDNQIMEV 183
+V D I KR+ ++ KV L+ + IE I+ ++ DN++ EV
Sbjct: 191 RVNAENSKHDPITKRNASYASSNEVWKFISELGISKVQLSVEDIETILNTLIYDNKV-EV 249
Query: 184 KSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTC 243
S E I + Y+++ EP TG + CGVCP N C G ISP TC
Sbjct: 250 TVVASVESGQIKL----YRSIEL---LIEP-TGLMRTA-CGVCPVFNECQEGGTISPTTC 300
Query: 244 VYYTKWLDF 252
+Y +WLD+
Sbjct: 301 IYMKEWLDY 309
>gi|170064626|ref|XP_001867603.1| DNA-directed RNA polymerase III subunit F [Culex quinquefasciatus]
gi|167881952|gb|EDS45335.1| DNA-directed RNA polymerase III subunit F [Culex quinquefasciatus]
Length = 305
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 113/242 (46%), Gaps = 35/242 (14%)
Query: 27 SNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIK 86
S AP D + + E++IY +I + GIW RD++ +K NL + K +K L+NK LIK
Sbjct: 82 STAPKD-IDNEEKIIYAIIEEGG-NRGIWIRDIR--VKSNLIMTQLNKVLKQLENKKLIK 137
Query: 87 EVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLK----------- 135
V +++ KK M EP + I+GGAWY + + EF+ V+ QCL+
Sbjct: 138 AVKSVNASKKKVYMLYNLEPDRSITGGAWYQDQDFEAEFVDVLNQQCLRFLRMKKEMAKE 197
Query: 136 ------QIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSG 189
+ KL ++ + I G K+ L + +E I++ VV D G
Sbjct: 198 CRDGPLAVQKLAYCSVADVHKFISDLGISKISLDEDDLETILKTVVYD---------GKA 248
Query: 190 EFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKW 249
E GK YK V + +PCG+CP I C+ G I+PK C Y +W
Sbjct: 249 ESMPTVEGKNLYKAVE-----APLASPGLVQMPCGICPVIKNCSDFGEITPKLCSYINEW 303
Query: 250 LD 251
LD
Sbjct: 304 LD 305
>gi|294889371|ref|XP_002772779.1| DNA-directed RNA polymerases iii 39 Kd polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239877329|gb|EER04595.1| DNA-directed RNA polymerases iii 39 Kd polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 438
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 115/217 (52%), Gaps = 11/217 (5%)
Query: 39 RLIYDVIRSNKQDMGIWTRDM--KRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGK 96
R+IY +I+ GIW +D+ + ++ + VTK L+ + LIK+V ++ +K +
Sbjct: 80 RMIYKLIKMAGTQ-GIWNKDLATRANMEHRIASGSVTKICSQLEARRLIKKVTSVQHKSR 138
Query: 97 KHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQII-KLKVATLEGISDSIKRS 155
K M E EPSK++SGG WY +G LDT+ I+ ++ CL I + + T E + +
Sbjct: 139 KVWMLYELEPSKEVSGGNWYRDGRLDTDLIERLRQCCLDYITNQNRAVTCEDVHRYVVSQ 198
Query: 156 GAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKT 215
G + + ++I +++R++ LD IM V S +GE + K CY VS+ G
Sbjct: 199 GVSHITHSVEEIGDVLRSLELDRVIMVVPST-AGE----SIAKQCY--VSRPANLGLDYI 251
Query: 216 GSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
VPC CP + C G ++P+ C+Y +KWL+
Sbjct: 252 TRIVDVPCIACPVSSECVVGGRVNPEECLYLSKWLNL 288
>gi|350594678|ref|XP_003483947.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform 2
[Sus scrofa]
Length = 323
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 123/237 (51%), Gaps = 30/237 (12%)
Query: 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKG 95
+ E+L+Y +I + + GIW+RD++ K NLP + K +K+L++K LIK V ++
Sbjct: 97 NQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASK 153
Query: 96 KKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKR 154
KK M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R
Sbjct: 154 KKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPVIQR 213
Query: 155 SGAF----------------KVDLTKQQIEEIVRAVVLDNQI-MEVKSNGSGEFTNIPVG 197
+ +F KV+L+ + IE I+ ++ D ++ M + + G ++
Sbjct: 214 NSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGH 273
Query: 198 KVCYKNVSKGGGGGEPKTGSSASV--PCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
Y+ V+ P + V PCG+CP + C G ISP C+Y T+WL+F
Sbjct: 274 MKLYRAVN-------PIISPTGLVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 323
>gi|345329112|ref|XP_001515545.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC6
[Ornithorhynchus anatinus]
Length = 316
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 122/237 (51%), Gaps = 30/237 (12%)
Query: 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKG 95
+ E+L+Y +I + + GIW+RD++ K NLP + K +K+L++K LIK V ++
Sbjct: 90 NQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASK 146
Query: 96 KKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDS-IKR 154
KK M +P + ++GGAWYS+ ++EF++V+ QC K + A E + I+R
Sbjct: 147 KKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAEAARESKQNPMIQR 206
Query: 155 SGAF----------------KVDLTKQQIEEIVRAVVLDNQI-MEVKSNGSGEFTNIPVG 197
+ +F KV+L+ + IE I+ ++ D ++ M + + G ++
Sbjct: 207 NSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGH 266
Query: 198 KVCYKNVSKGGGGGEPKTGSSASV--PCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
Y+ V+ P + V PCG+CP + C G ISP C+Y T+WL+F
Sbjct: 267 MKLYRAVN-------PIIQPTGLVRAPCGLCPVFDDCHEGGEISPSNCIYITEWLEF 316
>gi|387915870|gb|AFK11544.1| DNA-directed RNA polymerase III subunit RPC6 [Callorhinchus milii]
Length = 314
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 123/236 (52%), Gaps = 28/236 (11%)
Query: 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKG 95
+ E+L+Y +I + + GIW+RD++ K NLP + K +K++++K LIK V ++
Sbjct: 88 NQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTEINKILKNMESKKLIKAVKSVAASK 144
Query: 96 KKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQII-KLKVATLEGISDSIKR 154
KK M +P + ++GGAWYS+ ++EF++V+ QC K + K +VA S ++R
Sbjct: 145 KKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQNKAEVARESKQSPMVQR 204
Query: 155 SGAF----------------KVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGK 198
+ +F KV+L+ + IE I+ ++ D ++ EV + E T VG
Sbjct: 205 NSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKV-EVTIIAAKEGT---VGS 260
Query: 199 VCYKNVSKGGGGGEPKTGSSASV--PCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
V K P + V PCG+CP + C G ISP TC+Y T+WL F
Sbjct: 261 V--DGQMKLFRAVNPIIQPTGLVRTPCGMCPVFDDCHEGGDISPATCIYMTEWLQF 314
>gi|443693096|gb|ELT94539.1| hypothetical protein CAPTEDRAFT_19562 [Capitella teleta]
Length = 314
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/251 (32%), Positives = 123/251 (49%), Gaps = 32/251 (12%)
Query: 21 KRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQ 80
K K PD + E+++Y +I + + GIW RD++ K NLP V K +KSL+
Sbjct: 75 KLKDPDVGNKTKGGDTQEQIMYQIIE-DAGNKGIWIRDIRT--KSNLPMTAVNKLVKSLE 131
Query: 81 NKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQC---LKQI 137
+K +IK V ++ KK M EP + ++GGAWYS+ ++EF++V+ QC L+Q
Sbjct: 132 SKKVIKAVKSVSASKKKVYMLASLEPDRSVTGGAWYSDQDFESEFVEVLNQQCFNYLEQR 191
Query: 138 IKL-----------KVATLEGISDS---IKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEV 183
+KL + A+ SD I G KV L + IE I+ ++ D ++ +
Sbjct: 192 VKLARESNSEPMTQRNASFASSSDVWKFITELGISKVSLAVEDIETILDTLIYDGKVEKS 251
Query: 184 KSNGSGEFTNIPVGKVCYKNVSKGGGGGEP---KTGSSASVPCGVCPQINFCTPDGVISP 240
G G K+ Y+ ++ P TG S PCGVCP C G++SP
Sbjct: 252 IVAGGGAADGESQVKL-YRAIT-------PVIINTGLMRS-PCGVCPVFRECHEAGIVSP 302
Query: 241 KTCVYYTKWLD 251
TC+Y WLD
Sbjct: 303 STCLYMKDWLD 313
>gi|118792885|ref|XP_320558.3| AGAP011973-PA [Anopheles gambiae str. PEST]
gi|116117113|gb|EAA00356.3| AGAP011973-PA [Anopheles gambiae str. PEST]
Length = 295
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 122/260 (46%), Gaps = 40/260 (15%)
Query: 13 LAKGSGMSKR-KRP--DSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPD 69
L KG+ + R K P S+AP D + + ER+IY+++ + GIW RD++ +K NL
Sbjct: 55 LKKGNTLIYRLKDPGKKSSAPKD-IDNEERVIYNIVEEGG-NKGIWIRDIR--VKSNLVM 110
Query: 70 NIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVV 129
+ K +K L+NK LIK V +++ KK M EP + I+GGAWY + + EF+ V+
Sbjct: 111 TQLNKVLKQLENKKLIKAVKSVNASKKKVYMLYNLEPDRSITGGAWYQDQDFEAEFVDVL 170
Query: 130 KSQCLK-----------------QIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVR 172
QCL+ + KL ++ + I G K+ L + +E I++
Sbjct: 171 NQQCLRFLRQKREVAKGSGEGPLAVQKLSECSVADVHRFISDLGISKISLDEDDLETILK 230
Query: 173 AVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSS-ASVPCGVCPQINF 231
VV D G E G Y+ + P +PCG+CP +
Sbjct: 231 TVVYD---------GKAERVAQISGGFLYRAIET------PIAAPGLVQMPCGICPVVKN 275
Query: 232 CTPDGVISPKTCVYYTKWLD 251
C G I+P+ C Y ++WLD
Sbjct: 276 CADCGEITPQLCTYISEWLD 295
>gi|440800559|gb|ELR21595.1| DNA-directed RNA polymerase III 34kD-subunit family protein,
putative [Acanthamoeba castellanii str. Neff]
Length = 230
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 109/219 (49%), Gaps = 40/219 (18%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
LT ERL+Y +I + +MG+WTRDMK + NL + K +K+LQN+ LIK V +I
Sbjct: 48 LTQEERLVYSLI-EKEGNMGLWTRDMK--FRSNLQQTTINKILKTLQNRKLIKAVKSIAG 104
Query: 94 KGKKHLMAVEFEPSKDISGGAWYS-EGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSI 152
+ +K M + EPS + G A+Y+ +G D+EF+ V+ C + I + TLE ++ +
Sbjct: 105 RNRKVYMLYDLEPSVKVKGNAFYTPDGVFDSEFVNVLNKHCYRYIEQEGSVTLESMASFV 164
Query: 153 KRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGE 212
+ SG V+L + +++I+ ++ D ++ +VK G +IPV
Sbjct: 165 RNSGMSNVELKDEDVQQILDTLIYDGKVDKVKDAG----ISIPV---------------- 204
Query: 213 PKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLD 251
C +G ++P C Y T+WLD
Sbjct: 205 ----------------FYMCEDEGDVTPAKCPYLTQWLD 227
>gi|357612377|gb|EHJ67947.1| putative DNA-directed RNA polymerase III 39 kDa polypeptide [Danaus
plexippus]
Length = 269
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 123/262 (46%), Gaps = 37/262 (14%)
Query: 7 DLYLLGLAKGSGMSKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVN 66
DLY G GS + + K +S + E+++Y++I + GIW RD++ ++ N
Sbjct: 27 DLYNQG---GSLLYRLKNQNSKQAIKGADNEEKVVYNLIEE-AGNKGIWIRDIR--IRSN 80
Query: 67 LPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
L + +TK +KSL+ K +IK V ++ KK M EP + +SGGAWY + ++EF+
Sbjct: 81 LANTQLTKVLKSLEGKKVIKAVKCVNASKKKVYMLFNLEPDRSVSGGAWYQDQDFESEFV 140
Query: 127 KVVKSQCLK----QIIKLK-------------VATLEGISDSIKRSGAFKVDLTKQQIEE 169
++ QCL+ + K+K AT + I G KV L + +
Sbjct: 141 DILNRQCLRFLQQRADKIKNNPRGPIVGRTQSYATAAEVQKYITDLGISKVKLEVEDVIT 200
Query: 170 IVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQI 229
I+ +V D G E P G Y+ + P G VPCGVCP I
Sbjct: 201 ILNTLVYD---------GKAESNVYPDGNRVYRAIE----SLLPPPG-LVQVPCGVCPLI 246
Query: 230 NFCTPDGVISPKTCVYYTKWLD 251
+ C G+I+P+ C Y +WL+
Sbjct: 247 HKCNSTGLITPQDCKYMDEWLE 268
>gi|325190908|emb|CCA25394.1| DNAdirected RNA polymerase III subunit RPC6 putative [Albugo
laibachii Nc14]
gi|325190983|emb|CCA25467.1| DNAdirected RNA polymerase III subunit RPC6 putative [Albugo
laibachii Nc14]
Length = 312
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 111/218 (50%), Gaps = 29/218 (13%)
Query: 53 GIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGK------------KHLM 100
GIWTRD+K ++ N+ +V K+++ L+++ LIK V +I +K K KH +
Sbjct: 101 GIWTRDIK--MQSNIAQQVVVKTLRLLESRQLIKSVKSISSKNKILYMLFDLGTSCKHNL 158
Query: 101 AVEFE------PSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKR 154
V + PS +++GG WY+E D FI + + + I ++TL+ I+D +
Sbjct: 159 EVFIDITFLSVPSTEVTGGPWYNEQEFDHVFINTLCTFVYEVIKASGMSTLKAITDKVHA 218
Query: 155 SGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPK 214
SG KV L ++I I++ ++ D +I +V+S N +V YK +
Sbjct: 219 SGISKVALGSEEIRSILQTLMYDGRIEQVRSVSLKPMNN----EVNYKVTQQI-----TT 269
Query: 215 TGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
+ PCG+CP C VISP++C+Y TKWLD
Sbjct: 270 MNYLSETPCGICPVFEQCREGNVISPRSCLYITKWLDL 307
>gi|427788023|gb|JAA59463.1| Putative dna-directed rna polymerase iii subunit rpc6
[Rhipicephalus pulchellus]
Length = 335
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 124/257 (48%), Gaps = 24/257 (9%)
Query: 15 KGSGMSKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTK 74
K + + K D+++ E+++Y ++ + GIW RD++ +K L + K
Sbjct: 68 KNQLLYRLKNTDADSKCKGSDREEKVVYKIVEE-AGNKGIWIRDIR--IKSGLVLTALNK 124
Query: 75 SIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCL 134
+K+L++K LIK V ++ KK M EP + ++GGAWYSE ++EF++V+ QC
Sbjct: 125 ILKNLESKKLIKAVKSVSASKKKVYMLFNLEPDRSVTGGAWYSEQEFESEFVEVLNQQCH 184
Query: 135 KQIIK------------------LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVL 176
+ +IK A+ + + + IK+ G KV L+ + IE I+ ++
Sbjct: 185 RFLIKKLTVAKDTSAGDPLLEKNASFASSKEVWEFIKKLGISKVQLSVEDIEMILSTLIY 244
Query: 177 DNQIMEVKSNG-SGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSA--SVPCGVCPQINFCT 233
D ++ + G ++ +++ EP S+ +PCG CP IN C
Sbjct: 245 DGKVEKTVVCGSGSSLSSSSRSASSSEDLVNLYRAVEPLIDSTGLMRIPCGTCPVINNCY 304
Query: 234 PDGVISPKTCVYYTKWL 250
G +SP TC Y+ KWL
Sbjct: 305 EGGAVSPSTCQYFKKWL 321
>gi|452825669|gb|EME32664.1| DNA-directed RNA polymerase III subunit C34 [Galdieria sulphuraria]
Length = 288
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 109/217 (50%), Gaps = 14/217 (6%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
L+ ERL+Y + + GIWTRD++ + L +TK +K+L+ K L+K ++ +
Sbjct: 79 LSTEERLVYSHV-EEAGNKGIWTRDLRNISR--LQQTQLTKILKNLELKKLVKPFKSVKS 135
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKV-ATLEGISDSI 152
K KK M + EPS D++GG WY D EF V+ Q L+ I +E +++ I
Sbjct: 136 KNKKLYMLFDLEPSIDVTGGPWYYNQEFDAEFFDVLYQQSLRFIRGSSTGVAVEEVANYI 195
Query: 153 KRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGE 212
G K L + E +++ ++ D ++E G+ + V + C+ + S GE
Sbjct: 196 TSLGISKEKLEIKDFESLLQTMIYDG-VIERICKGTDLEKSTTVYRYCH-HTSPFATLGE 253
Query: 213 PKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKW 249
VPCG+CP C+ DGVISP CVY KW
Sbjct: 254 --------VPCGICPVYKSCSIDGVISPVNCVYLRKW 282
>gi|312377801|gb|EFR24541.1| hypothetical protein AND_10775 [Anopheles darlingi]
Length = 318
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 128/282 (45%), Gaps = 61/282 (21%)
Query: 13 LAKGSGMSKR-KRP--DSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPD 69
L KG+ + R K P SN P D + ER+IY ++ + GIW RD++ +K NL
Sbjct: 55 LKKGTTLIYRLKDPGKKSNVPKD-IDAEERVIYTIVEEGG-NKGIWIRDIR--VKSNLVM 110
Query: 70 NIVTKSIKSLQNKSLIKEV--------------------VNIHNKG---KKHLMAVEFEP 106
+TK +K L+NK LIK V V ++N+ KK M EP
Sbjct: 111 TQLTKVLKQLENKKLIKAVKSVNVSSESLSWPSALVTNHVPLYNRQASKKKVYMLYNLEP 170
Query: 107 SKDISGGAWYSEGSLDTEFIKVVKSQCLK-----------------QIIKLKVATLEGIS 149
+ I+GGAWY + + EF+ V+ QCL+ + KL V ++ +
Sbjct: 171 DRSITGGAWYQDQDFEAEFVDVLNQQCLRFLRMKRETARNSGEGPLAVQKLSVCSVADVH 230
Query: 150 DSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGG 209
I G K+ L + +E I++ VV D + + +N G F Y+ +
Sbjct: 231 RFISDLGISKISLDEDDLETILKTVVYDGKAERI-ANMDGGF--------LYRAIE---S 278
Query: 210 GGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLD 251
EP +PCG+CP I C+ G I+PK C Y ++WLD
Sbjct: 279 PLEPP--GLVQMPCGICPVIKNCSDCGEITPKLCTYISEWLD 318
>gi|196007462|ref|XP_002113597.1| hypothetical protein TRIADDRAFT_26289 [Trichoplax adhaerens]
gi|190584001|gb|EDV24071.1| hypothetical protein TRIADDRAFT_26289 [Trichoplax adhaerens]
Length = 307
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 118/235 (50%), Gaps = 35/235 (14%)
Query: 37 HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGK 96
E+L+Y VI + + GIW+RD++ LK NL + K +++L++K LIK V ++ K
Sbjct: 87 QEKLVYQVI-GDAGNKGIWSRDIR--LKCNLQMTQLNKILRNLESKKLIKAVKSVTASKK 143
Query: 97 KHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKL---------------- 140
K M +P ++GGAWYS+ ++EF++V+ QC + +++
Sbjct: 144 KLYMLFNLDPDISVTGGAWYSDQDFESEFVEVLNQQCYRCLVQKVEESLNLCVNQPRISL 203
Query: 141 --KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQI-MEVKSNGSGEFTNIPVG 197
A+ E + I KV LT IE I+ ++ D + M+++S+ G+ +
Sbjct: 204 NNSFASSEEVWKIITNLKISKVTLTVTDIETILNTLIYDGKAEMKIESDPDGQEFKL--- 260
Query: 198 KVCYKNVSK-GGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLD 251
Y+ V G KT PCG+CP I+ C +G ISP TC+Y +WL+
Sbjct: 261 ---YRAVKPIIDASGLEKT------PCGICPVIDQCYENGAISPATCIYMKEWLE 306
>gi|395507808|ref|XP_003758211.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6
[Sarcophilus harrisii]
Length = 255
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 112/219 (51%), Gaps = 29/219 (13%)
Query: 54 IWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGG 113
IW+RD++ K NLP + K +K+L++K LIK V ++ KK M +P + ++GG
Sbjct: 46 IWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGG 103
Query: 114 AWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRSGAF-------------- 158
AWYS+ ++EF++V+ QC K + K + A + I+R+ +F
Sbjct: 104 AWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPMIQRNSSFASSHEVWKYICELG 163
Query: 159 --KVDLTKQQIEEIVRAVVLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKT 215
KV+L+ + IE I+ ++ D ++ M + + G ++ Y+ VS P
Sbjct: 164 ISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVS-------PII 216
Query: 216 GSSASV--PCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
+ V PCG+CP + C G ISP CVY T+WL+F
Sbjct: 217 QPTGLVRAPCGLCPVFDDCHEGGEISPSNCVYMTEWLEF 255
>gi|346468447|gb|AEO34068.1| hypothetical protein [Amblyomma maculatum]
Length = 333
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 118/259 (45%), Gaps = 24/259 (9%)
Query: 15 KGSGMSKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTK 74
K + + K D++ E+++Y ++ + GIW RD++ K L + K
Sbjct: 68 KNQLLYRLKDSDADKKCKGSDREEKVVYKIVE-EAGNKGIWIRDIRN--KSGLVLTSLNK 124
Query: 75 SIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCL 134
+KSL++K LIK V ++ KK M EP + +SGGAWY++ ++EF++V+ QC
Sbjct: 125 ILKSLESKKLIKAVKSVSASKKKVYMLYNLEPDRSVSGGAWYNDQEFESEFVEVLNQQCH 184
Query: 135 KQIIKLKVATLEGISDS-----------------IKRSGAFKVDLTKQQIEEIVRAVVLD 177
+ ++K E SD IK+ G KV L+ + IE I+ ++ D
Sbjct: 185 RFLLKKLTVAKETSSDPVLEKNASFASSKEVWEFIKKLGISKVQLSLEDIETILNTLIYD 244
Query: 178 NQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSA--SVPCGVCPQINFCTPD 235
+ + GS + + EP S+ +PCG CP C
Sbjct: 245 GKAEKTVVCGSSVLGGSSKNSSSSEELLNLYRAIEPLVESAGLMRMPCGTCPVKQNCYEG 304
Query: 236 GVISPKTCVYYTKWL--DF 252
GV+SP TC Y+ KWL DF
Sbjct: 305 GVVSPSTCQYFKKWLSEDF 323
>gi|289740045|gb|ADD18770.1| putative E3 ubiquitin ligase [Glossina morsitans morsitans]
Length = 294
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 116/257 (45%), Gaps = 35/257 (13%)
Query: 13 LAKGSGMSKR-KRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L KG + R K P + + E+++Y +I + GIW RD++ L+ NL
Sbjct: 55 LKKGEKLYYRSKEPKKSVLPKDADNEEKIVYGIIEEGG-NKGIWIRDIR--LQSNLNMTQ 111
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L+ K LIK V +++ KK M EP + +SGGAWY + + EF+ V+
Sbjct: 112 LNKILKNLETKKLIKAVKSVNASKKKVYMLYNLEPDRSVSGGAWYQDQDFEAEFVDVLNQ 171
Query: 132 QCLK-----------------QIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAV 174
QCL+ + +L +++ + I G KV+L + +E I++ V
Sbjct: 172 QCLRFLQEKRKKAEERRDGPLAVRQLSCCSVKEVHKYISDVGISKVNLDEDDLETILKTV 231
Query: 175 VLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTP 234
V D G E + G Y+ + P G +PCG CP I C+
Sbjct: 232 VYD---------GKAERILVSDGAYVYRAIE----SPLPPAG-LIQMPCGRCPVIKNCSK 277
Query: 235 DGVISPKTCVYYTKWLD 251
G ++P C Y WLD
Sbjct: 278 IGAVTPVKCQYMKDWLD 294
>gi|326473190|gb|EGD97199.1| DNA-directed RNA polymerase III subunit Rpc34 [Trichophyton
tonsurans CBS 112818]
Length = 348
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 116/250 (46%), Gaps = 35/250 (14%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+L ERL+Y+VI S ++ GIWT+ +K + NL I+ + +KSL+ K+ +K V N+
Sbjct: 95 NLNGEERLVYNVIHSTGRN-GIWTKIIK--TRTNLHQTIMNRCLKSLEAKNYVKSVRNVK 151
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVK---------------------- 130
+K M +PS++I+GGAW+++G LD +FI+ +
Sbjct: 152 YPSRKIYMLSGLQPSEEITGGAWFTDGVLDADFIRGLSGWIEHWVSARSWNSPGAEDQPN 211
Query: 131 ----SQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSN 186
C I K T I+ +I SG V + + I ++++ + D +++ ++
Sbjct: 212 RDRSESCRPTIRKHSHPTTADITKAINGSGLTPVTMDEGSISQLLQMLCYDGRLVSLRDG 271
Query: 187 GSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSS------ASVPCGVCPQINFCTPDGVISP 240
+ P +++ G G GS+ PCG CP + C P G ++
Sbjct: 272 AAYRSVKKPNEISLQRDLGLQGPDGGANEGSALGSNGMTEAPCGQCPVFSLCRPGGPVNA 331
Query: 241 KTCVYYTKWL 250
+ C Y+ +WL
Sbjct: 332 ENCEYFDEWL 341
>gi|125775055|ref|XP_001358779.1| GA18836 [Drosophila pseudoobscura pseudoobscura]
gi|195145010|ref|XP_002013489.1| GL24167 [Drosophila persimilis]
gi|54638520|gb|EAL27922.1| GA18836 [Drosophila pseudoobscura pseudoobscura]
gi|194102432|gb|EDW24475.1| GL24167 [Drosophila persimilis]
Length = 293
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 125/264 (47%), Gaps = 48/264 (18%)
Query: 13 LAKGSGMSKR-KRPD--SNAPSDSLTDHERLIYDVIR--SNKQDMGIWTRDMKRELKVNL 67
L KG + R K P+ S P D+ + E+++Y ++ SNK GIW RD++ +K NL
Sbjct: 53 LKKGEKLVYRAKDPEKKSALPKDA-DNEEKIVYGIVEEGSNK---GIWIRDIR--MKSNL 106
Query: 68 PDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIK 127
+ K +K+L+ K LIK V +++ KK M EP + I+GGAWY + + EF+
Sbjct: 107 NMTQLNKILKNLETKKLIKAVKSVNASKKKVYMLYNLEPDRSITGGAWYQDQDFEVEFVD 166
Query: 128 VVKSQCLK-----------------QIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEI 170
V+ QCL+ + ++ T+ + I G KV+L + +E I
Sbjct: 167 VLNQQCLRFLQMKRENAEKKRDGPLALKQMSCCTVSDVHKFISDLGISKVNLDEDDLETI 226
Query: 171 VRAVVLD---NQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCP 227
++ VV D +IM+ + N+P+ P TG +PCG+CP
Sbjct: 227 LKTVVYDGNAERIMQQDGSYVYRAVNLPL----------------PPTG-LVQMPCGICP 269
Query: 228 QINFCTPDGVISPKTCVYYTKWLD 251
I C+ G ++ C Y +WLD
Sbjct: 270 VIKNCSNCGDVTAIKCQYMKEWLD 293
>gi|281202585|gb|EFA76787.1| RNA polymerase III subunit [Polysphondylium pallidum PN500]
Length = 301
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 118/235 (50%), Gaps = 32/235 (13%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEV----- 88
LT + L+Y +I + D G WT++++ + NL VTK +K L+ ++LIK V
Sbjct: 76 LTADDMLVYQLIEQS-NDKGTWTKEIRTQ--TNLQQTQVTKILKVLETRNLIKAVKTINM 132
Query: 89 -VNIHNKGK------KHLMAVEFEPSKDISGGAWYS-EGSLDTEFIKVVKSQCLKQIIKL 140
+NI N K K MA EPS++++GG+ Y SLD E I +K C I
Sbjct: 133 DINIINDRKAIAGRKKVYMAYNVEPSREVTGGSLYGGSQSLDEELISAMKLSCNSFISNK 192
Query: 141 KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVC 200
A L I + +K++G + DLT + I+ +V +++ D I E++ S +G V
Sbjct: 193 GAADLTEIMNYMKKTG--EQDLTMEDIQTLVNSLIYDGLIEEMRDTRSTNMYGRRMG-VI 249
Query: 201 YKNVSKGGGGGEPKT----GSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLD 251
YK KT +PCGVCP + C +G I+PK CVY+ +WL+
Sbjct: 250 YK---------PTKTIIPENHFTKMPCGVCPVFSLCADEGEITPKKCVYFQQWLN 295
>gi|242776068|ref|XP_002478769.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Talaromyces stipitatus ATCC 10500]
gi|218722388|gb|EED21806.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Talaromyces stipitatus ATCC 10500]
Length = 353
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 121/273 (44%), Gaps = 65/273 (23%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
SL D E+L+Y+VI S + GIW R + + + +L + K++KSL+ K+ IK +VN+
Sbjct: 85 SLNDTEKLVYNVIHSTGR-TGIWIRQLGK--RTDLHKTSLDKALKSLEGKNFIKSIVNVK 141
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIK------------------VVKS--- 131
+ GKK M E P++D++GGAW+++G LD EFI VVKS
Sbjct: 142 HPGKKVYMLAELTPAEDVTGGAWFTDGVLDAEFIGVLSEFIEITVSKRTWYEIVVKSGTS 201
Query: 132 -----------QCLKQIIKLK-----------VATLEGISDSIKRSGAFKVDLTKQQIEE 169
+ +KQ K K T+ I+ + ++G V L + I +
Sbjct: 202 GSNKRQKLNTGEVVKQDEKEKRYIPYPADYKYYPTVGEITTEVNKTGITPVKLDEGSISQ 261
Query: 170 IVRAVVLDNQIMEVKSNGSGEFTNIP------------VGKVCYKNVSKGGGGGEPKTGS 217
++R + D +++ + + + + P +V K G G
Sbjct: 262 LLRMMCFDGRLVSLNDHANYKAVRRPDEIIKARADADRTPEVQQKIFYNGKNG------- 314
Query: 218 SASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
PCG CP C P G +SP+ C Y+ +W
Sbjct: 315 MTEAPCGQCPVFKICQPGGTVSPENCEYFDEWF 347
>gi|91094199|ref|XP_971496.1| PREDICTED: similar to AGAP011973-PA [Tribolium castaneum]
gi|270011207|gb|EFA07655.1| hypothetical protein TcasGA2_TC030601 [Tribolium castaneum]
Length = 301
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 110/234 (47%), Gaps = 36/234 (15%)
Query: 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKG 95
+ E++++ +I + GIW RD++ K NL + K +KSL+ K +IK V ++
Sbjct: 86 NEEKVVFKIIEE-AGNKGIWIRDIR--FKSNLNMTQLNKVLKSLETKKIIKAVKSVSASK 142
Query: 96 KKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIK---------------- 139
KK M + E ++GGAWY + ++EF+ V+ QC + + +
Sbjct: 143 KKVYMLYDLEADSSVTGGAWYQDQDFESEFVDVLSQQCCRYLRQKWEDANSMGGGPLLAR 202
Query: 140 -LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIME-VKSNGSGEFTNIPVG 197
AT + + I G K+ L+ IE I+ VVLDN V +NGS
Sbjct: 203 NRSYATAQDVHKFISELGISKISLSVDDIESILYTVVLDNNAERIVATNGS--------- 253
Query: 198 KVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLD 251
Y+ V+K +T + CGVCP + C G I+PK C Y+T+WL+
Sbjct: 254 -FLYRAVNKF-----MQTPGIVTTTCGVCPIASRCADTGFINPKVCNYFTEWLE 301
>gi|2228752|gb|AAB63677.1| RNA polymerase III subunit [Homo sapiens]
Length = 317
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 127/262 (48%), Gaps = 32/262 (12%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTDH-ERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D+ E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 66 LRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 122
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 123 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 182
Query: 132 QCLKQI-IKLKVATLEGISDSIKRSGAF----------------KVDLTKQQIEEIVRAV 174
QC K + K + A + I+R+ +F KV+L+ + IE I+ +
Sbjct: 183 QCFKFLQSKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTL 242
Query: 175 VLDNQ----IMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQIN 230
+ D + I+ K S + + ++ V +G P P P +
Sbjct: 243 IYDGKVEMTIIACKRRHSWQ------CRWTHETV-QGSQSNHPSHRFGPGHPVDSAPVFD 295
Query: 231 FCTPDGVISPKTCVYYTKWLDF 252
C G ISP C+Y T+WL+F
Sbjct: 296 DCHEGGEISPSNCIYMTEWLEF 317
>gi|119489044|ref|XP_001262822.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Neosartorya fischeri NRRL 181]
gi|119410980|gb|EAW20925.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Neosartorya fischeri NRRL 181]
Length = 352
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 115/261 (44%), Gaps = 46/261 (17%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+L+ E L+Y+VI S ++ GIW R ++ + NL +I+ + +KSL+ KS IK V N+
Sbjct: 89 NLSPDESLVYNVIHSTGRN-GIWVRAIQN--RTNLHKSILDRCLKSLEGKSYIKSVHNVK 145
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQII-------------K 139
+K M PS+D++GGAW+++G LD FI V + +
Sbjct: 146 FPSRKMYMLAGLAPSEDVTGGAWFTDGVLDANFISTVAGFIEYTVSRKSWYEVPATGNKR 205
Query: 140 LKVA--------------------------TLEGISDSIKRSGAFKVDLTKQQIEEIVRA 173
LK A T+ I+ ++ SG V L ++ I +++
Sbjct: 206 LKTADGRASVKQESGEKKYLPYPAGYQGYPTVAMITAAVNESGITPVRLGEESIIQLLEM 265
Query: 174 VVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGG----GGEPKTGSSASVPCGVCPQI 229
+ D +++ + + + P KN G G + T VPCG CP
Sbjct: 266 LCYDKKLVALNNGQFYKSVKNPAAVKMEKNRKPEGDVEDVGDKLVTNGMTEVPCGPCPVF 325
Query: 230 NFCTPDGVISPKTCVYYTKWL 250
C P G +SP+TC Y+ WL
Sbjct: 326 KLCVPGGAVSPETCEYFDPWL 346
>gi|195330977|ref|XP_002032179.1| GM23658 [Drosophila sechellia]
gi|194121122|gb|EDW43165.1| GM23658 [Drosophila sechellia]
Length = 293
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 120/259 (46%), Gaps = 38/259 (14%)
Query: 13 LAKGSGMSKR-KRPD--SNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPD 69
L KG + R K P+ S P D+ + E+++Y ++ + GIW RD++ +K NL
Sbjct: 53 LKKGEKLVYRAKDPEKKSALPKDA-DNEEKVVYGIVEEGG-NKGIWIRDIR--MKSNLNM 108
Query: 70 NIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVV 129
+ K +K+L+ K LIK V +++ KK M EP I+GGAWY + + EF+ V+
Sbjct: 109 IQLNKILKNLETKKLIKAVKSVNASKKKVYMLYNLEPDLSITGGAWYQDQDFEVEFVDVL 168
Query: 130 KSQCLK-----------------QIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVR 172
QCL+ ++ T+ + I G KV+L + +E I++
Sbjct: 169 NQQCLRFLQMKRDSAEKKREGPLAFKQMSCCTVHEVQKFISDLGISKVNLAEADLETILK 228
Query: 173 AVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFC 232
VV D G+ E G Y+ V+ P TG +PCG+CP I C
Sbjct: 229 TVVYD---------GNAERVRQQDGSFVYRAVN----APLPPTG-LVQMPCGICPVIKNC 274
Query: 233 TPDGVISPKTCVYYTKWLD 251
+ G ++ TC Y WLD
Sbjct: 275 SNCGDVTAITCEYMRDWLD 293
>gi|70982438|ref|XP_746747.1| DNA-directed RNA polymerase III subunit Rpc34 [Aspergillus
fumigatus Af293]
gi|66844371|gb|EAL84709.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Aspergillus fumigatus Af293]
gi|159123012|gb|EDP48132.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Aspergillus fumigatus A1163]
Length = 352
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 115/261 (44%), Gaps = 46/261 (17%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+L+ E L+Y+VI S ++ GIW R ++ + NL +I+ + +KSL+ KS IK V N+
Sbjct: 89 NLSPDESLVYNVIHSTGRN-GIWVRAIQS--RTNLHKSILDRCLKSLEGKSYIKSVHNVK 145
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQII-------------K 139
+K M PS+D++GGAW+++G LD FI V + +
Sbjct: 146 FPSRKMYMLAGLAPSEDVTGGAWFTDGVLDANFISTVAGFIEYTVSRKSWYEVPATGNKR 205
Query: 140 LKVA--------------------------TLEGISDSIKRSGAFKVDLTKQQIEEIVRA 173
LK A T+ I+ ++ SG V L ++ I +++
Sbjct: 206 LKTADGRASVKQESGEKKYLPYPAGYQGYPTVAMITAAVNESGITPVRLGEESIIQLLEM 265
Query: 174 VVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGG----GGEPKTGSSASVPCGVCPQI 229
+ D +++ + + + P KN G G + T VPCG CP
Sbjct: 266 LCYDKKLVALNNGQFYKSVKNPAAVKMEKNRKPEGDVEDVGDKLVTNGMTEVPCGPCPVF 325
Query: 230 NFCTPDGVISPKTCVYYTKWL 250
C P G +SP+TC Y+ WL
Sbjct: 326 KLCVPGGAVSPETCEYFDPWL 346
>gi|24648960|ref|NP_651029.1| CG5380, isoform A [Drosophila melanogaster]
gi|386766236|ref|NP_001247237.1| CG5380, isoform B [Drosophila melanogaster]
gi|20139853|sp|Q9VD25.1|RPC6_DROME RecName: Full=Probable DNA-directed RNA polymerase III subunit
RPC6; Short=DNA-directed RNA polymerase III subunit F;
Short=RNA polymerase III subunit C6
gi|7300836|gb|AAF55978.1| CG5380, isoform A [Drosophila melanogaster]
gi|21430846|gb|AAM51101.1| SD19581p [Drosophila melanogaster]
gi|220950288|gb|ACL87687.1| CG5380-PA [synthetic construct]
gi|220959240|gb|ACL92163.1| CG5380-PA [synthetic construct]
gi|295293321|gb|ADF87926.1| MIP22258p [Drosophila melanogaster]
gi|383292866|gb|AFH06555.1| CG5380, isoform B [Drosophila melanogaster]
Length = 293
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 120/259 (46%), Gaps = 38/259 (14%)
Query: 13 LAKGSGMSKR-KRPD--SNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPD 69
L KG + R K P+ S P D+ + E+++Y ++ + GIW RD++ +K NL
Sbjct: 53 LKKGEKLVYRAKDPEKKSALPKDA-DNEEKVVYGIVEEGG-NKGIWIRDIR--MKSNLNM 108
Query: 70 NIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVV 129
+ K +K+L+ K LIK V +++ KK M EP I+GGAWY + + EF+ V+
Sbjct: 109 IQLNKILKNLETKKLIKAVKSVNASKKKVYMLYNLEPDLSITGGAWYQDQDFEVEFVDVL 168
Query: 130 KSQCLK-----------------QIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVR 172
QCL+ ++ T+ + I G KV+L + +E I++
Sbjct: 169 NQQCLRFLQMKRDSAEKKREGPLAFKQMSCCTVNEVQKFISDLGISKVNLAEADLETILK 228
Query: 173 AVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFC 232
VV D G+ E G Y+ V+ P TG +PCG+CP I C
Sbjct: 229 TVVYD---------GNAERVRQQDGSFVYRAVN----APLPPTG-LVQMPCGICPVIKNC 274
Query: 233 TPDGVISPKTCVYYTKWLD 251
+ G ++ TC Y WLD
Sbjct: 275 SNCGDVTAITCEYMRDWLD 293
>gi|260831248|ref|XP_002610571.1| hypothetical protein BRAFLDRAFT_117854 [Branchiostoma floridae]
gi|229295938|gb|EEN66581.1| hypothetical protein BRAFLDRAFT_117854 [Branchiostoma floridae]
Length = 317
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 111/237 (46%), Gaps = 32/237 (13%)
Query: 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKG 95
+ E+L+Y +I ++ + GIW RD++ + N+ + K +++L++K LIK V ++
Sbjct: 93 NQEKLVYQII-TDAGNKGIWIRDIR--YRCNIMITQLNKILRNLESKKLIKSVKSVAASK 149
Query: 96 KKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEG-------- 147
KK M EP + ++GGAW+S+ ++EF++V+ QC K + + E
Sbjct: 150 KKVYMLFNLEPDQSVTGGAWFSDQDFESEFVEVLNQQCFKFLQQKATTAKEAKQGPIAQR 209
Query: 148 ---------ISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQI---MEVKSNGSGEFTNIP 195
+ I G KV L+ IE I+ ++ D ++ + + S E +
Sbjct: 210 NASYASSKEVCKFITELGISKVQLSVADIETILNTLIYDGKVEMTVVASQSSSTEDSQTK 269
Query: 196 VGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
+ + + G +PCGVCP + C G +SP TCVY WL+F
Sbjct: 270 LFRAVAPIMQPAG---------LMRIPCGVCPVFDRCHEGGAVSPSTCVYMKDWLEF 317
>gi|194743126|ref|XP_001954051.1| GF16937 [Drosophila ananassae]
gi|190627088|gb|EDV42612.1| GF16937 [Drosophila ananassae]
Length = 293
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 120/259 (46%), Gaps = 38/259 (14%)
Query: 13 LAKGSGMSKRKR-PD--SNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPD 69
L KG + R R P+ S P D+ + E+++Y ++ + GIW RD++ +K NL
Sbjct: 53 LKKGEKLVYRARDPEKKSALPKDA-DNEEKVVYGIVEEGG-NKGIWIRDIR--MKSNLNM 108
Query: 70 NIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVV 129
+ K +K+L+ K LIK V +++ KK M EP I+GGAWY + + EF+ V+
Sbjct: 109 IQLNKILKNLETKKLIKAVKSVNASKKKVYMLYNLEPDLSITGGAWYQDQDFEVEFVDVL 168
Query: 130 KSQCLK-----------------QIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVR 172
QCL+ ++ T+ + I G KV+L + +E I++
Sbjct: 169 NQQCLRFLQMKRDGAEKKREGPLAFKQMSCCTVNEVHKFISDLGISKVNLAEADLETILK 228
Query: 173 AVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFC 232
VV D G+ E + G Y+ V+ TG +PCG+CP I C
Sbjct: 229 TVVYD---------GNAERVRLQDGSFVYRAVNSPLA----PTG-LVQMPCGICPVIKNC 274
Query: 233 TPDGVISPKTCVYYTKWLD 251
+ G ++ TC Y WLD
Sbjct: 275 SNCGDVTAITCEYMRDWLD 293
>gi|320168667|gb|EFW45566.1| polymerase III polypeptide F [Capsaspora owczarzaki ATCC 30864]
Length = 349
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 113/240 (47%), Gaps = 31/240 (12%)
Query: 38 ERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKK 97
ERLIY I S K + GIWTRD++ K N+ + K++K + LIK V ++ KK
Sbjct: 98 ERLIYQTIESVK-NRGIWTRDLRH--KTNIGIGQLNKTLKKFETAKLIKAVKSVAASKKK 154
Query: 98 HLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKL------------KVATL 145
M + EP K +SGGAWYSE D+EF + ++ L+ + +
Sbjct: 155 VYMLYDLEPDKTLSGGAWYSEQEFDSEFAQQIQHAVLRYLKSRYESCSAERKYIDSFVSC 214
Query: 146 EGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSN--GSGEFTNIPVGKVCY-- 201
E ++ I + L+ Q+I E++ ++V ++ VKS+ + N P Y
Sbjct: 215 EEVTQHIADIKLATIALSFQEIHEVLISLVYGGALI-VKSHPLPFTRYDNAPDPDAHYLS 273
Query: 202 ------KNVSKG---GGGGEPKTGSS--ASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
++V G E + + A+VPCGVCP C G+ISP+TC Y +W
Sbjct: 274 YFVMQQEDVDPGLQLFAWKELRLPPTPMATVPCGVCPVFQLCEDGGIISPETCQYMDEWF 333
>gi|194911143|ref|XP_001982296.1| GG12523 [Drosophila erecta]
gi|190656934|gb|EDV54166.1| GG12523 [Drosophila erecta]
Length = 293
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 120/259 (46%), Gaps = 38/259 (14%)
Query: 13 LAKGSGMSKR-KRPD--SNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPD 69
L KG + R K P+ S P D+ + E+++Y ++ + GIW RD++ +K NL
Sbjct: 53 LKKGEKLVYRAKDPEKKSALPKDA-DNEEKVVYGIVEEGG-NKGIWIRDIR--MKSNLNM 108
Query: 70 NIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVV 129
+ K +K+L+ K LIK V +++ KK M EP I+GGAWY + + EF+ V+
Sbjct: 109 IQLNKILKNLETKKLIKAVKSVNASKKKVYMLYNLEPDLSITGGAWYQDQDFEVEFVDVL 168
Query: 130 KSQCLK-----------------QIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVR 172
QCL+ ++ T+ + I G KV+L + +E I++
Sbjct: 169 NQQCLRFLQMKRDSAEKKREGPLAFKQMSCCTVNEVQKFISDLGISKVNLAEADLETILK 228
Query: 173 AVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFC 232
VV D G+ E G Y+ V+ P TG +PCG+CP I C
Sbjct: 229 TVVYD---------GNAERVRQQDGSFVYRAVN----SPLPPTG-LVQMPCGICPVIKNC 274
Query: 233 TPDGVISPKTCVYYTKWLD 251
+ G ++ TC Y WLD
Sbjct: 275 SNCGDVTAITCEYMRDWLD 293
>gi|321463825|gb|EFX74838.1| hypothetical protein DAPPUDRAFT_56706 [Daphnia pulex]
Length = 322
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 108/218 (49%), Gaps = 33/218 (15%)
Query: 53 GIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISG 112
GI +D++ + +NL + K +K+L+ K+LIK V++I K M + +P + ++G
Sbjct: 119 GILNKDIRDQSGLNL--TTINKILKALEGKNLIKSVLSISVAKIKVYMLFDLQPDRSVTG 176
Query: 113 GAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDS-IKRSGAF------------ 158
G+WY++G ++E + +V QC + + K + A L+ + I R+ +F
Sbjct: 177 GSWYTDGEFESELVDIVNQQCYRMLQQKAEAAKLKAMDGPLIVRNASFLSSKEICQMISD 236
Query: 159 ----KVDLTKQQIEEIVRAVVLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEP 213
K +LT ++IE I+ +V D +I M + S+G + +
Sbjct: 237 MNIVKFNLTVEEIEAILETLVYDGKIEMRMVSDGDERIKTYRIVETLL------------ 284
Query: 214 KTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLD 251
+ + +PCGVCP I C G + PK CVYY +WLD
Sbjct: 285 SSAAIVRIPCGVCPVIKICGTAGEVQPKNCVYYDQWLD 322
>gi|195445244|ref|XP_002070239.1| GK11949 [Drosophila willistoni]
gi|194166324|gb|EDW81225.1| GK11949 [Drosophila willistoni]
Length = 295
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 123/262 (46%), Gaps = 44/262 (16%)
Query: 13 LAKGSGMSKR-KRPD--SNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPD 69
L KG + R K P+ S P D+ + E+++Y ++ + GIW RD++ +K NL
Sbjct: 55 LKKGEKLIYRAKDPEKVSALPKDA-DNEEKVVYGIVEEGG-NKGIWIRDIR--MKSNLNM 110
Query: 70 NIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVV 129
+ K +K+L+ K LIK V +++ KK M EP + ++GGAWY + + EF+ V+
Sbjct: 111 TQLNKILKNLETKKLIKAVKSVNASKKKVYMLYNLEPDRTVTGGAWYQDQDFEVEFVDVL 170
Query: 130 KSQCLK-----------------QIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVR 172
QCL+ + ++ T+ + I G KV+L + +E I++
Sbjct: 171 NQQCLRFLQMKRENAEKKREGPLVLREMSCCTVNEVHKFISDLGVSKVNLDEDDLETILK 230
Query: 173 AVVLDNQIMEV-KSNGSGEF--TNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQI 229
VV D V KS+GS + N P+ P TG +PCG+CP I
Sbjct: 231 TVVYDGNAERVMKSDGSYVYRAVNSPL----------------PPTG-LIQMPCGICPVI 273
Query: 230 NFCTPDGVISPKTCVYYTKWLD 251
C+ G ++ C Y WLD
Sbjct: 274 KNCSDCGDVTAINCQYMKDWLD 295
>gi|242022647|ref|XP_002431750.1| DNA-directed RNA polymerase III subunit F, putative [Pediculus
humanus corporis]
gi|212517075|gb|EEB19012.1| DNA-directed RNA polymerase III subunit F, putative [Pediculus
humanus corporis]
Length = 315
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 112/235 (47%), Gaps = 38/235 (16%)
Query: 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKG 95
+ E+++Y ++ + + GIW RD++ + NL + K +K+L+NK LIK V ++
Sbjct: 99 NEEKVVYSIVEA-AGNKGIWIRDIRYQ--SNLLPTQLNKILKALENKKLIKAVKSVSASK 155
Query: 96 KKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCL-----------------KQII 138
KK M EP K ++GGAWYS+ + EF+ V+ QC +Q
Sbjct: 156 KKVYMLYNLEPDKSLTGGAWYSDQDFEAEFVGVLSQQCYRFLQQKQEKLKDFNGSPRQWK 215
Query: 139 KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGK 198
+ A+ + + I G +V L+ + IE I+ +V D ++ + ++ + K
Sbjct: 216 NMSYASSKEVWKFISELGISRVMLSVEDIETILDTIVYDGKVEKA--------VDVDLTK 267
Query: 199 VCYKNVSKGGGGGEPKTGSSASV--PCGVCPQINFCTPDGVISPKTCVYYTKWLD 251
+ Y+ V EP + V PCGVCP FC G ++PK C Y WLD
Sbjct: 268 I-YRAV-------EPLLPAPGIVQTPCGVCPVYQFCGDVGSVTPKKCEYLRNWLD 314
>gi|225680490|gb|EEH18774.1| DNA-directed RNA polymerase III subunit RPC6 [Paracoccidioides
brasiliensis Pb03]
gi|226292874|gb|EEH48294.1| DNA-directed RNA polymerase III subunit RPC6 [Paracoccidioides
brasiliensis Pb18]
Length = 362
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 122/267 (45%), Gaps = 54/267 (20%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+L ERLIY V+ S + G+WTR +K + NL IV +S+KSL+ K+ IK V N+
Sbjct: 95 NLNAEERLIYSVVESTGRG-GVWTRTIKT--RTNLHQTIVNRSLKSLETKNYIKSVRNVK 151
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVV---------------KSQCLKQI 137
+K M +PS+D++GGAW+++G LD +FI+ + ++ +++
Sbjct: 152 YPQRKMYMLSGLQPSEDVTGGAWFTDGVLDVDFIRGIGGWIEHWVSSRSWFDQAAAERKV 211
Query: 138 IKLKV---------------------ATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVL 176
+ KV T+ I+++I SG V L + I +++ +
Sbjct: 212 KRQKVRQDSSKGEPQYIPYLPSYSGYPTVTDITNAINNSGLTPVTLCESSISQLLEMLCF 271
Query: 177 DNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSA-------------SVPC 223
D +++ ++ + + P +++ G G+ K G++A PC
Sbjct: 272 DGKLISLRDGAAYKSVKKPNQISLQRDL--GLQTGDKKGGNNADQDSLILGGNGMTEAPC 329
Query: 224 GVCPQINFCTPDGVISPKTCVYYTKWL 250
G CP C G ++ C Y+ +WL
Sbjct: 330 GRCPVFTLCQEGGPVNATNCEYFDEWL 356
>gi|195502543|ref|XP_002098270.1| GE24046 [Drosophila yakuba]
gi|194184371|gb|EDW97982.1| GE24046 [Drosophila yakuba]
Length = 293
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 119/259 (45%), Gaps = 38/259 (14%)
Query: 13 LAKGSGMSKR-KRPD--SNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPD 69
L KG + R K P+ S P D+ + E+++Y ++ + GIW RD++ +K NL
Sbjct: 53 LKKGEKLVYRAKDPEKKSALPKDA-DNEEKVVYGIVEEGG-NKGIWIRDIR--MKSNLNM 108
Query: 70 NIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVV 129
+ K +K+L+ K LIK V +++ KK M EP I+GGAWY + + EF+ V+
Sbjct: 109 IQLNKILKNLETKKLIKAVKSVNASKKKVYMLYNLEPDLSITGGAWYQDQDFEVEFVDVL 168
Query: 130 KSQCLK-----------------QIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVR 172
QCL+ ++ T+ + I G KV+L + +E I++
Sbjct: 169 NQQCLRFLQMKRDSAEKKREGPLAFKQMSCCTVNEVQKFISDLGISKVNLAEADLETILK 228
Query: 173 AVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFC 232
VV D G+ E G Y+ V+ P TG +PCG+CP I C
Sbjct: 229 TVVYD---------GNAERVRQQDGSFVYRAVN----SPLPPTG-LVQMPCGICPVIKNC 274
Query: 233 TPDGVISPKTCVYYTKWLD 251
+ G ++ C Y WLD
Sbjct: 275 SNCGDVTAINCEYMRDWLD 293
>gi|332372876|gb|AEE61580.1| unknown [Dendroctonus ponderosae]
Length = 305
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 115/255 (45%), Gaps = 36/255 (14%)
Query: 15 KGSGMSKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTK 74
KG K K P + + + E+++Y +I + GIW RD++ K N+ + + K
Sbjct: 67 KGELFYKFKDPTKKSANKGSDNEEKVVYKIIEE-AGNKGIWIRDIR--FKSNINNTQLNK 123
Query: 75 SIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCL 134
+KSL+ K +IK V ++ KK M + +P ++GGAWY + ++EF+ V+ QC
Sbjct: 124 VLKSLEAKKIIKAVKSVAASKKKVYMLFDLDPDSSVTGGAWYQDQDFESEFVDVLNQQCH 183
Query: 135 KQII-KLKVATLEG----------------ISDSIKRSGAFKVDLTKQQIEEIVRAVVLD 177
+ ++ +L+ A +G + I G KV L+ IE I+ VVLD
Sbjct: 184 RYLVQRLEDAVKQGGGPLMVRNRSYAASSEVQKFISDLGISKVSLSIADIESILYTVVLD 243
Query: 178 NQIMEVKSNGSGEFTNIPVGKVCYKNVSKG-GGGGEPKTGSSASVPCGVCPQINFCTPDG 236
N V + G YK V+K G KT CGVC C G
Sbjct: 244 NNAERVAAAN---------GTFLYKAVNKFLAVPGLVKT------TCGVCLLAQQCGKTG 288
Query: 237 VISPKTCVYYTKWLD 251
I+P +C Y WLD
Sbjct: 289 SINPSSCEYLANWLD 303
>gi|395829733|ref|XP_003788000.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC6-like [Otolemur garnettii]
Length = 310
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 126/262 (48%), Gaps = 34/262 (12%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L G+G+ R NA +D E+L+Y +I + + GIW+RD++ K +LP
Sbjct: 61 LRSGTGLLYRIEDSQNAGKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSDLPLTE 117
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
V K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 118 VNKILKNLESKKLIKAVKSVAASKKKVYMLYNMQPDRPVTGGAWYSDQDFESEFVEVLNH 177
Query: 132 QCLKQI-IKLKVATLEGISDSIKRSGAF----------------KVDLTKQQIEEIVRAV 174
QC K + K + A + I+R+ +F +V+L+ + IE I+ +
Sbjct: 178 QCFKFLQTKAETAQESKKNPVIQRNSSFASSHKVWKYICELGISEVELSMEDIETILNTL 237
Query: 175 VLDNQ----IMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQIN 230
+ D + I+ K G ++ + + + G PC + P +
Sbjct: 238 IYDGKVKMTIIVAKEGTVGTDGHMKLYRAVSPIILPMG---------LIRAPCDLXPVFD 288
Query: 231 FCTPDGVISPKTCVYYTKWLDF 252
C G ISP C+Y T+WL++
Sbjct: 289 ECHEGGEISPSICIYMTEWLEY 310
>gi|321463822|gb|EFX74835.1| hypothetical protein DAPPUDRAFT_199715 [Daphnia pulex]
Length = 322
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 108/218 (49%), Gaps = 33/218 (15%)
Query: 53 GIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISG 112
GI +D++ + +NL + K +K+L+ K+LIK V++I K M + +P + ++G
Sbjct: 119 GILNKDIRDQSGLNL--TTINKILKALEGKNLIKSVLSISVAKIKVYMLFDLQPDRSVTG 176
Query: 113 GAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDS-IKRSGAF------------ 158
G+WY++G ++E + +V QC + + K + A L+ + I R+ +F
Sbjct: 177 GSWYTDGEFESELVDIVNQQCYRMLQQKAEAAKLKAMDGPLIVRNASFLSSKEICQMISD 236
Query: 159 ----KVDLTKQQIEEIVRAVVLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEP 213
K +LT ++IE I+ +V D +I M + S+G + +
Sbjct: 237 MNIVKFNLTVEEIEAILETLVYDGKIEMRMVSDGDERIKTYRIVETLL------------ 284
Query: 214 KTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLD 251
+ + +PCGVCP I C G + PK CVYY +WLD
Sbjct: 285 SSAAIVRIPCGVCPVIVKCGTAGEVQPKNCVYYDQWLD 322
>gi|307207698|gb|EFN85335.1| DNA-directed RNA polymerase III subunit RPC6 [Harpegnathos
saltator]
Length = 331
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 107/236 (45%), Gaps = 38/236 (16%)
Query: 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKG 95
+ E+++Y +I + GIW RD++ K NL + K +KSL+ K IK V ++
Sbjct: 110 NEEKIVYTIIE-EAGNKGIWIRDIR--FKSNLAPTQLNKILKSLETKKCIKAVKSVAASK 166
Query: 96 KKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQI-----------------I 138
KK M EP + ++GGAWY + +TEF+ ++ C +
Sbjct: 167 KKVYMLYSLEPDRSVTGGAWYQDQDFETEFVDILTQSCYTYLNAKATEAKNCKHGPIVTR 226
Query: 139 KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGK 198
+ + + + I SG KV L+ + IE ++ A+V D +I E T G
Sbjct: 227 NMSFVSSKDVHKYITHSGVSKVVLSVEDIEMLLNALVYDGKI---------EKTATEEGN 277
Query: 199 VCYKNVSKGGGGGEPKTGSSASV--PCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
Y+ + +P S + PCG+CP C+ G ++P C Y TKWL+F
Sbjct: 278 FMYRAI-------QPLLSSPGLIKAPCGICPVRKNCSNVGEVTPIKCEYITKWLEF 326
>gi|212532631|ref|XP_002146472.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Talaromyces marneffei ATCC 18224]
gi|210071836|gb|EEA25925.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Talaromyces marneffei ATCC 18224]
Length = 359
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 115/279 (41%), Gaps = 71/279 (25%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
SL D E+L+Y+VI S + GIW R + + + +L + K++KSL+ K+ IK + N+
Sbjct: 85 SLNDTEKLVYNVIHSTGR-TGIWIRQLGK--RTDLHKTSLDKALKSLEGKNFIKSIFNVK 141
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLK----------- 141
+ GKK M E P++D++GGAW+++G LD EFI V+ Q+ K
Sbjct: 142 HPGKKVYMLAELTPAEDVTGGAWFTDGVLDAEFIGVLSDYIEVQVSKRSWYEVIPKPAAS 201
Query: 142 --------------------------------------VATLEGISDSIKRSGAFKVDLT 163
T+ I+ + ++G V L
Sbjct: 202 SSNNKRQKLNTGEIMKQNEPTATEKERKYYPYPADYKFYPTVGEITVEVNKTGITPVKLD 261
Query: 164 KQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIP------------VGKVCYKNVSKGGGGG 211
+ I +++R + D +++ + + + + P +V K+ G G
Sbjct: 262 EGSISQLLRMMCFDGRLIALNDHTNYKAVRRPNEIIKARADADRPPEVQQKSFFNGANG- 320
Query: 212 EPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
PCG CP C P G +SP+ C Y+ W
Sbjct: 321 ------MTEAPCGQCPVFKICQPGGTVSPENCEYFDDWF 353
>gi|330802412|ref|XP_003289211.1| hypothetical protein DICPUDRAFT_88404 [Dictyostelium purpureum]
gi|325080698|gb|EGC34242.1| hypothetical protein DICPUDRAFT_88404 [Dictyostelium purpureum]
Length = 293
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 116/244 (47%), Gaps = 40/244 (16%)
Query: 25 PDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSL 84
P+ L + LIY +I ++ + G WTR++K++ +TK +K L+N+ L
Sbjct: 66 PEDQMKFRGLGAEDFLIYQLIETSGNN-GAWTRELKQQSGYQQVQ--ITKILKILENRKL 122
Query: 85 IKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYS-EGSLDTEFIKVVKSQCLKQIIKLKVA 143
IK V +I + KK M EPS+D++GG Y + S D ++I+++K +K ++ K A
Sbjct: 123 IKAVKSIQSGRKKVYMLYNMEPSRDVTGGTLYGGDQSYDHQYIQIMKMH-IKTFVENKGA 181
Query: 144 T-LEGISDSIKRSG--AFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEF--------- 191
L I +++ A L + I+ +V V+ D I E++ G
Sbjct: 182 VDLSDIMTYLRKVAEEATSQSLGPEDIQALVNTVIYDGDIEEMRDTRMGALMGRRSGILY 241
Query: 192 ----TNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYT 247
T+IPV C ++PCG CP C+ DG+ISPK CVY+
Sbjct: 242 KPTKTSIPVNNFC-------------------NMPCGNCPVFEICSDDGIISPKKCVYFQ 282
Query: 248 KWLD 251
++LD
Sbjct: 283 QFLD 286
>gi|296422853|ref|XP_002840973.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637200|emb|CAZ85164.1| unnamed protein product [Tuber melanosporum]
Length = 303
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 117/262 (44%), Gaps = 40/262 (15%)
Query: 10 LLGLAKGSGMSKRKRP-DSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLP 68
L L +GS R P D ++T E L+Y I+ + ++ GIWT+ +K +K N+
Sbjct: 61 LSALTRGSQTVFRSVPKDFAEKVKNMTPDEELLYGYIQESARE-GIWTKQLK--IKSNMH 117
Query: 69 DNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIK- 127
V K++K L+ K IK + ++++ + M E PS +++GG W+++ LD EF+
Sbjct: 118 STAVNKALKGLERKKFIKSIKSVNHPARNIYMLYELTPSIEVTGGPWFTDSELDKEFVNE 177
Query: 128 ----VVKSQCLKQIIKLKV--------------ATLEGISDSIKRSGAFKVDLTKQQIEE 169
+ K K KL TL + +K S +VDL + I
Sbjct: 178 LLTAITKFMVSKSFPKLPARGVIGSFPPGYTGYPTLNQVYLWVKSSNLTEVDLAEADIRS 237
Query: 170 IVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQI 229
++ +V D +I V VG + Y+ V + + G + S PCG CP
Sbjct: 238 LLDVLVYDGKIERV------------VGGMAYRAVRR----PDSINGFTES-PCGRCPVF 280
Query: 230 NFCTPDGVISPKTCVYYTKWLD 251
C G +S CVY+ WL+
Sbjct: 281 TLCKEGGPVSASNCVYFEDWLN 302
>gi|358374565|dbj|GAA91156.1| DNA-directed RNA polymerase III subunit Rpc34 [Aspergillus kawachii
IFO 4308]
Length = 355
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 118/276 (42%), Gaps = 73/276 (26%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
L+ E L+Y+VI S + GIW R + + NL +I+ + +KSL+ KS IK V N+
Sbjct: 90 LSPDESLVYNVIHSTGRS-GIWVRAIGN--RTNLHKSILDRCLKSLETKSYIKSVHNVKF 146
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQII--------------- 138
+K M PS+D++GGAW+++G LD FI V +
Sbjct: 147 PSRKMYMLANLAPSEDVTGGAWFTDGVLDENFINSVAGFIEYSVSRKSWYEAPSSDGPRN 206
Query: 139 -KLKVA--------------------------TLEGISDSIKRSGAFKVDLTKQQIEEIV 171
++K A T+ ++ ++ SG V L ++ I +++
Sbjct: 207 KRMKTADGGVAVKQEGAPKEYLPFPAGYQGYPTIPQLTAAVNESGITPVRLGEESITQLL 266
Query: 172 RAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVS-----KGGGGGEPKTGSSA------- 219
+ DN+++ + +GEF YK+V K +P+T +
Sbjct: 267 EMLCYDNKLVSLN---NGEF---------YKSVKNPEQVKSQQARKPRTDDAGIDDRLVK 314
Query: 220 ----SVPCGVCPQINFCTPDGVISPKTCVYYTKWLD 251
PCG CP C P G +SP++C Y+ WL+
Sbjct: 315 NGMTEAPCGNCPVFKLCAPGGAVSPESCEYFDPWLE 350
>gi|323447055|gb|EGB03019.1| hypothetical protein AURANDRAFT_34609 [Aureococcus anophagefferens]
gi|323454934|gb|EGB10803.1| hypothetical protein AURANDRAFT_77764 [Aureococcus anophagefferens]
Length = 297
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 121/248 (48%), Gaps = 19/248 (7%)
Query: 8 LYLLGLAKGSGMSKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNL 67
L LL ++ R R + A S +E+L+ + ++ G+W RD+K ++
Sbjct: 50 LELLKEEGKQDLTYRLRDKAQAEKLSELTNEQLLVLQVVERAENAGVWLRDIKN--ATSM 107
Query: 68 PDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIK 127
+ K++K L+++ L+K V ++ K KK MA + P++++SGG WY++ D EF+
Sbjct: 108 QQQTLNKALKVLESRKLVKTVKSVQQKTKKLYMAYDLVPTREVSGGPWYTDQEFDHEFVG 167
Query: 128 VVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNG 187
+K +K + ++ +TL+ I +++RSG V L+ ++ ++ ++ D+++
Sbjct: 168 AIKKIVVKYVQSVQTSTLDEIHGALERSGIATVPLSVADVKLVIDTLLCDSKL------- 220
Query: 188 SGEFTNIPVG-KVCYKNVSKGGGGGEPKTGSSASVPCGVCPQI---NFCTPDGVISPKTC 243
EFT + K ++K VP G P+ +C DG +P +C
Sbjct: 221 -EEFTAVTAASKASRYKIAKPA----VDVAWVGEVPAGCVPEAPGRRYCA-DGRHAPASC 274
Query: 244 VYYTKWLD 251
Y KWL+
Sbjct: 275 QYLQKWLE 282
>gi|327296369|ref|XP_003232879.1| DNA-directed RNA polymerase III subunit Rpc34 [Trichophyton rubrum
CBS 118892]
gi|326465190|gb|EGD90643.1| DNA-directed RNA polymerase III subunit Rpc34 [Trichophyton rubrum
CBS 118892]
Length = 357
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 119/259 (45%), Gaps = 44/259 (16%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+L ERL+Y+VI S ++ GIWT+ +K + NL I+ + +KSL+ K+ +K V N+
Sbjct: 95 NLNGEERLVYNVIHSTGRN-GIWTKVIKT--RTNLHQTIMNRCLKSLEAKNYVKSVRNVK 151
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVV----------------------- 129
+K M +PS++I+GGAW+++G LD +FI+ +
Sbjct: 152 YPSRKIYMLSGLQPSEEITGGAWFTDGVLDADFIRGLSGWIEHWVSARSWNSPGAEDQPK 211
Query: 130 -----------KSQCLKQIIKLK-VATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLD 177
++Q + + + T I+ +I SG V + + I ++++ + D
Sbjct: 212 GKKRKLPADDSETQYIPYLPSYQGHPTTADITKAINGSGLTPVTMDEGSISQLLQMLCYD 271
Query: 178 NQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSS------ASVPCGVCPQINF 231
+++ ++ + P +++ G G GSS PCG CP +
Sbjct: 272 GRLVSLRDGAAYRSVKKPNEISLQRDLGLQGPDGGANEGSSLGSNGMTEAPCGQCPVFSL 331
Query: 232 CTPDGVISPKTCVYYTKWL 250
C P G ++ + C Y+ +WL
Sbjct: 332 CRPGGPVNAENCEYFNEWL 350
>gi|195112652|ref|XP_002000886.1| GI22278 [Drosophila mojavensis]
gi|193917480|gb|EDW16347.1| GI22278 [Drosophila mojavensis]
Length = 293
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 123/262 (46%), Gaps = 44/262 (16%)
Query: 13 LAKGSGMSKR-KRPD--SNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPD 69
L KG + R K P+ S P D+ + E+++Y ++ + GIW RD++ +K NL
Sbjct: 53 LKKGEKLIYRAKDPEKKSALPKDA-DNEEKVVYSIVEEGG-NKGIWIRDIR--MKSNLNM 108
Query: 70 NIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVV 129
+ K +K+L+ K LIK V +++ KK M E + ++GGAWY + + EF+ V+
Sbjct: 109 TQLNKILKNLETKKLIKAVKSVNASKKKVYMLYNLEADRSVTGGAWYQDQDFEVEFVDVL 168
Query: 130 KSQCLK-----------------QIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVR 172
QCL+ ++ T++ + I G KV+L + +E I++
Sbjct: 169 NQQCLRFLQMKRESAEKKRDGPLAFKQMSCCTVKEVHKFISDLGISKVNLDEDDLETILK 228
Query: 173 AVVLDNQIMEV-KSNGSGEF--TNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQI 229
VV D + +S+G+ + N+P+ P G +PCG+CP I
Sbjct: 229 TVVYDGNAERILQSDGTYVYRAVNLPL----------------PAPG-FVQMPCGICPVI 271
Query: 230 NFCTPDGVISPKTCVYYTKWLD 251
C+ G ++ C Y +WLD
Sbjct: 272 KNCSNCGDVTAINCQYMNEWLD 293
>gi|425773182|gb|EKV11551.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Penicillium digitatum Pd1]
gi|425778785|gb|EKV16890.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Penicillium digitatum PHI26]
Length = 351
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 122/267 (45%), Gaps = 55/267 (20%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+LT E ++Y+VI S ++ GIW R + + NL +I+ + +K+L+ K+ IK + N+
Sbjct: 85 NLTPDEAMVYNVIHSTER-TGIWVRHIGN--RTNLHKSILDRCLKALEGKNYIKSLHNVK 141
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI-------------------------- 126
+K M PS++++GGAW+++G LD FI
Sbjct: 142 YPSRKMYMLAGLAPSEEVTGGAWFTDGVLDANFINSVAGYIEYTVSRKSWYEVPASDRKN 201
Query: 127 KVVKSQCLKQIIK-------------LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRA 173
K +K+ K +K T+ I+ ++ SG V L ++ + +++
Sbjct: 202 KRIKTASGKADVKSDEKTYLPYPHGYAGYPTVAQITSAVNESGITPVRLGEESVVQLLEM 261
Query: 174 VVLDNQIMEVKSNGSGE-FTNIPVGKVCYKNVS-KGGGGGEPKTGSS--------ASVPC 223
+ DN+++ + G+GE + ++ + N S K GE + +S PC
Sbjct: 262 LCFDNKLVAL---GNGEWYRSLKSPEAVKANQSRKPPVDGEDLSAASKHLVKNGMTEAPC 318
Query: 224 GVCPQINFCTPDGVISPKTCVYYTKWL 250
G CP C P G +SP+TC Y+ WL
Sbjct: 319 GQCPVFRLCAPGGAVSPETCEYFDPWL 345
>gi|302652784|ref|XP_003018234.1| hypothetical protein TRV_07755 [Trichophyton verrucosum HKI 0517]
gi|291181855|gb|EFE37589.1| hypothetical protein TRV_07755 [Trichophyton verrucosum HKI 0517]
Length = 365
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 120/260 (46%), Gaps = 44/260 (16%)
Query: 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNI 91
++L ERL+Y+VI S ++ GIWT+ +K + NL I+ + +KSL+ K+ +K V N+
Sbjct: 102 NNLNGEERLVYNVIHSTGRN-GIWTKIIKT--RTNLHQTIMNRCLKSLEAKNYVKSVRNV 158
Query: 92 HNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVV------------------KSQC 133
+K M +PS++I+GGAW+++G LD +FI+ + + Q
Sbjct: 159 KYPSRKIYMLSGLQPSEEITGGAWFTDGVLDADFIRGLSGWIEHWVSARSWNSPGAEDQP 218
Query: 134 LKQIIKLKV-----------------ATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVL 176
+ KL+ T I+ +I SG V + + I ++++ +
Sbjct: 219 KGKKRKLQADDSETQYIPYLPSYQGHPTTADITKAINGSGLTPVTMDEGSISQLLQMLCY 278
Query: 177 DNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSS------ASVPCGVCPQIN 230
D +++ ++ + P +++ G G GS+ PCG CP +
Sbjct: 279 DGRLISLRDGAAYRSVKKPNEISLQRDLGLQGPDGGANEGSALGSNGMTEAPCGQCPVFS 338
Query: 231 FCTPDGVISPKTCVYYTKWL 250
C P G ++ + C Y+ +WL
Sbjct: 339 LCRPGGPVNAENCEYFDEWL 358
>gi|121709264|ref|XP_001272362.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Aspergillus clavatus NRRL 1]
gi|119400511|gb|EAW10936.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Aspergillus clavatus NRRL 1]
Length = 355
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 121/267 (45%), Gaps = 53/267 (19%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+L+ E L+Y+VI S ++ GIW R + + L +I+ + +KSL+ K+ IK V N+
Sbjct: 89 NLSPDESLVYNVIHSTGRN-GIWVRQIVT--RTGLHKSILDRCLKSLEGKNYIKSVHNVK 145
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVV----------------------K 130
+K M PS+D++GGAW+++G LD FI V +
Sbjct: 146 FPSRKMYMLAGLAPSEDVTGGAWFTDGVLDANFISTVAGFIEYTVSRKSWYEVPAADAQR 205
Query: 131 SQCLKQI-----IKLK---------------VATLEGISDSIKRSGAFKVDLTKQQIEEI 170
++ LK + +K + T+ I+ ++ SG V L ++ I ++
Sbjct: 206 NKRLKTVNGHAAVKSEPGEKRYLPFPAGYQGYPTVGMITAAVNESGITPVRLGEESIVQL 265
Query: 171 VRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSS------ASVPCG 224
+ + DN+++ + N + ++ + S+ G E + G S PCG
Sbjct: 266 LEMLCYDNKLVAL--NNGELYKSVKNPATVKLDKSRKPEGDEAEVGDSLVKNGMTEAPCG 323
Query: 225 VCPQINFCTPDGVISPKTCVYYTKWLD 251
CP C P G +SP++C Y+ WLD
Sbjct: 324 QCPVFKLCAPGGAVSPESCEYFDPWLD 350
>gi|321463805|gb|EFX74818.1| hypothetical protein DAPPUDRAFT_324023 [Daphnia pulex]
Length = 245
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 110/220 (50%), Gaps = 37/220 (16%)
Query: 53 GIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISG 112
GI +D++ + +NL + K +K+L+ K+LIK V++I K M + +P + ++G
Sbjct: 42 GILNKDIRDQSGLNL--TTINKILKALEGKNLIKSVLSISVAKIKVYMLFDLQPDRSVTG 99
Query: 113 GAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDS-IKRSGAF------------ 158
G+WY++G ++E + ++ QC + + K + A L+ + I R+ +F
Sbjct: 100 GSWYTDGEFESELVDIMNQQCYRMLQQKAEAAKLKAMDGPLIVRNASFLSSKEICQMISD 159
Query: 159 ----KVDLTKQQIEEIVRAVVLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEP 213
K +LT ++IE I+ +V D +I M + S+G Y+ V E
Sbjct: 160 MNIVKFNLTVEEIEAILETLVYDGKIEMRMVSDGDERIKT-------YRIV-------ET 205
Query: 214 KTGSSA--SVPCGVCPQINFCTPDGVISPKTCVYYTKWLD 251
S+A +PCGVCP I C G + PK C YY +WLD
Sbjct: 206 LLSSAAIVRIPCGVCPVIEKCGTTGEVQPKNCAYYDQWLD 245
>gi|295661418|ref|XP_002791264.1| DNA-directed RNA polymerase III subunit RPC6 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226280826|gb|EEH36392.1| DNA-directed RNA polymerase III subunit RPC6 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 362
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 118/265 (44%), Gaps = 50/265 (18%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+L ERLIY V+ S + +G+WTR +K + NL IV +S+KSL+ K+ IK V N+
Sbjct: 95 NLNAEERLIYSVVESTGR-VGVWTRTIKT--RTNLHQTIVNRSLKSLETKNYIKSVRNVK 151
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVV---------------KSQCLKQI 137
+K M +PS+D++GGAW+++G LD +FI+ + ++ ++
Sbjct: 152 YPQRKMYMLSGLQPSEDVTGGAWFTDGVLDVDFIRGIGGWIEHWVSSRSWFDQAAAERKA 211
Query: 138 IKLKV---------------------ATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVL 176
+ KV T+ I+++I SG V + + I +++ +
Sbjct: 212 KRQKVRQDSSKGEPQYIPYLPSYSGYPTVTDITNAINNSGLTPVTMGESSISQLLEMLCF 271
Query: 177 DNQIMEVKSNGSGEFTNIPVGKVCYKN--VSKGGGGGEPKTGSSA---------SVPCGV 225
D +++ ++ + + P + + G GE + PCG
Sbjct: 272 DGKLISLRDGAAYKSVKKPNQISLQRELGLQTGDKTGENNADQDSLTLGGNGMTEAPCGR 331
Query: 226 CPQINFCTPDGVISPKTCVYYTKWL 250
CP C G ++ K C Y+ +WL
Sbjct: 332 CPVFTLCQEGGPVNAKNCEYFDEWL 356
>gi|317033273|ref|XP_001395167.2| DNA-directed RNA polymerase III subunit Rpc34 [Aspergillus niger
CBS 513.88]
gi|350637586|gb|EHA25943.1| hypothetical protein ASPNIDRAFT_190142 [Aspergillus niger ATCC
1015]
Length = 356
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 119/277 (42%), Gaps = 74/277 (26%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
L+ E L+Y+VI S + GIW R + + NL +I+ + +KSL+++S IK V N+
Sbjct: 90 LSPDESLVYNVIHSTGRS-GIWVRAIGN--RTNLHKSILDRCLKSLESRSYIKSVHNVKF 146
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVK----------------------- 130
+K M PS+D++GGAW+++G LD FI V
Sbjct: 147 PSRKMYMLANLAPSEDVTGGAWFTDGVLDENFINSVAGFIEYSVSRKSWYEAPSSSDGPR 206
Query: 131 ---------SQCLKQIIKLK-----------VATLEGISDSIKRSGAFKVDLTKQQIEEI 170
S +KQ K T+ ++ ++ SG V L ++ I ++
Sbjct: 207 NKRMKTADGSLAVKQEGAPKEYLPFPAGYQGYPTIPMLTAAVNESGITPVRLGEESITQL 266
Query: 171 VRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVS-----KGGGGGEPKTGSSA------ 219
+ + DN+++ + +GEF YK+V K +P+T +
Sbjct: 267 LEMLCYDNKLVSLN---NGEF---------YKSVKNPEQVKSQQARKPRTDDAGIDDRLV 314
Query: 220 -----SVPCGVCPQINFCTPDGVISPKTCVYYTKWLD 251
PCG CP C P G +SP++C Y+ WL+
Sbjct: 315 KNGMTEAPCGNCPVFKLCAPGGAVSPESCEYFDPWLE 351
>gi|134079876|emb|CAK41008.1| unnamed protein product [Aspergillus niger]
Length = 366
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 119/277 (42%), Gaps = 74/277 (26%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
L+ E L+Y+VI S + GIW R + + NL +I+ + +KSL+++S IK V N+
Sbjct: 100 LSPDESLVYNVIHSTGRS-GIWVRAIGN--RTNLHKSILDRCLKSLESRSYIKSVHNVKF 156
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVK----------------------- 130
+K M PS+D++GGAW+++G LD FI V
Sbjct: 157 PSRKMYMLANLAPSEDVTGGAWFTDGVLDENFINSVAGFIEYSVSRKSWYEAPSSSDGPR 216
Query: 131 ---------SQCLKQIIKLK-----------VATLEGISDSIKRSGAFKVDLTKQQIEEI 170
S +KQ K T+ ++ ++ SG V L ++ I ++
Sbjct: 217 NKRMKTADGSLAVKQEGAPKEYLPFPAGYQGYPTIPMLTAAVNESGITPVRLGEESITQL 276
Query: 171 VRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVS-----KGGGGGEPKTGSSA------ 219
+ + DN+++ + +GEF YK+V K +P+T +
Sbjct: 277 LEMLCYDNKLVSLN---NGEF---------YKSVKNPEQVKSQQARKPRTDDAGIDDRLV 324
Query: 220 -----SVPCGVCPQINFCTPDGVISPKTCVYYTKWLD 251
PCG CP C P G +SP++C Y+ WL+
Sbjct: 325 KNGMTEAPCGNCPVFKLCAPGGAVSPESCEYFDPWLE 361
>gi|302502965|ref|XP_003013443.1| hypothetical protein ARB_00261 [Arthroderma benhamiae CBS 112371]
gi|291177007|gb|EFE32803.1| hypothetical protein ARB_00261 [Arthroderma benhamiae CBS 112371]
Length = 357
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 119/259 (45%), Gaps = 44/259 (16%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+L ERL+Y+VI S ++ GIWT+ +K + NL I+ + +KSL+ K+ +K V N+
Sbjct: 95 NLNGEERLVYNVIHSTGRN-GIWTKIIKT--RTNLHQTIMNRCLKSLEAKNYVKSVRNVK 151
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVV------------------KSQCL 134
+K M +PS++I+GGAW+++G LD +FI+ + + Q
Sbjct: 152 YPSRKIYMLSGLQPSEEITGGAWFTDGVLDADFIRGLSGWIEHWVSARSWNSPGAEDQPK 211
Query: 135 KQIIKLKV-----------------ATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLD 177
+ KL+ T I+ +I SG V + + I ++++ + D
Sbjct: 212 GKKRKLQADDSETQYIPYLPSYQGHPTTADITKAINGSGLTPVTMDEGSISQLLQMLCYD 271
Query: 178 NQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSS------ASVPCGVCPQINF 231
+++ ++ + P +++ G G GS+ PCG CP +
Sbjct: 272 GRLVSLRDGAAYRSVKKPNEISLQRDLGLQGPDGGANEGSALGSNGMTEAPCGQCPVFSL 331
Query: 232 CTPDGVISPKTCVYYTKWL 250
C P G ++ + C Y+ +WL
Sbjct: 332 CRPGGPVNAENCEYFDEWL 350
>gi|307174837|gb|EFN65131.1| DNA-directed RNA polymerase III subunit RPC6 [Camponotus
floridanus]
Length = 311
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 111/235 (47%), Gaps = 38/235 (16%)
Query: 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKG 95
+ E+++Y +I + GIWTRD++ K NL + K +KSL+ K IK V ++
Sbjct: 96 NEEKVVYKIIEE-AGNKGIWTRDIR--FKSNLMHTQLKKILKSLETKKFIKVVKSVAASK 152
Query: 96 KKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIK---------------- 139
KK M EP + I+GGAWY + +TEF+ V+ QC + + +
Sbjct: 153 KKVYMLYNLEPDESITGGAWYQDQDFETEFVDVLNQQCYRFLEQKKEKTKNCNIGPVAAR 212
Query: 140 -LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGK 198
+ A+ + + I G KV L+ IE I+ +V D ++ + +G+ +N+
Sbjct: 213 NMTFASSKDVWKFISDLGISKVKLSVTNIEMILNTLVYDGKVERIL---AGDGSNL---- 265
Query: 199 VCYKNVSKGGGGGEPKTGSSASV--PCGVCPQINFCTPDGVISPKTCVYYTKWLD 251
Y+ + EP S + PCG+CP C DG ++P C Y +WLD
Sbjct: 266 --YRAI-------EPLVISPGLIRTPCGLCPVRKHCFDDGPVTPIKCQYIREWLD 311
>gi|169782002|ref|XP_001825464.1| DNA-directed RNA polymerase III subunit Rpc34 [Aspergillus oryzae
RIB40]
gi|83774206|dbj|BAE64331.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 355
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 113/268 (42%), Gaps = 55/268 (20%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+L+ E L+Y+VI S ++ GIW R + + L +I+ + +KSL+ K+ IK V N+
Sbjct: 89 NLSPDESLVYNVIHSTGRN-GIWVRAIGT--RTGLHKSILDRCLKSLEGKNYIKSVHNVK 145
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVK---------------------- 130
+K M PS+D++GGAW+++G LD FI V
Sbjct: 146 FPSRKMYMLAGLAPSEDVTGGAWFTDGVLDENFINTVAGYIEYTVSRKSWVEVPSADAHR 205
Query: 131 ---------SQCLKQIIKLKV-----------ATLEGISDSIKRSGAFKVDLTKQQIEEI 170
S +KQ K T+ ++D++ SG V L ++ I ++
Sbjct: 206 TKRIKTSDGSVSVKQEAGQKTFIPFPAGYRGYPTVSMLTDAVNESGITPVRLGEESITQL 265
Query: 171 VRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPK-------TGSSASVPC 223
+ + D +++ + SGE K GE K T PC
Sbjct: 266 LDMLCYDGKLVALN---SGEMYKSVKNPEAVKQSQARKPAGEDKGIDDRLVTNGMTEAPC 322
Query: 224 GVCPQINFCTPDGVISPKTCVYYTKWLD 251
G CP C P G +SP++C Y+ WL+
Sbjct: 323 GTCPVFKLCAPGGAVSPESCEYFDPWLE 350
>gi|238498852|ref|XP_002380661.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Aspergillus flavus NRRL3357]
gi|220693935|gb|EED50280.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Aspergillus flavus NRRL3357]
gi|391868106|gb|EIT77329.1| RNA polymerase III, subunit C34 [Aspergillus oryzae 3.042]
Length = 355
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 113/268 (42%), Gaps = 55/268 (20%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+L+ E L+Y+VI S ++ GIW R + + L +I+ + +KSL+ K+ IK V N+
Sbjct: 89 NLSPDESLVYNVIHSTGRN-GIWVRAIGT--RTGLHKSILDRCLKSLEGKNYIKSVHNVK 145
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVK---------------------- 130
+K M PS+D++GGAW+++G LD FI V
Sbjct: 146 FPSRKMYMLAGLAPSEDVTGGAWFTDGVLDENFINTVAGYIEYTVSRKSWFEVPSADAHR 205
Query: 131 ---------SQCLKQIIKLKV-----------ATLEGISDSIKRSGAFKVDLTKQQIEEI 170
S +KQ K T+ ++D++ SG V L ++ I ++
Sbjct: 206 TKRIKTSDGSVSVKQEAGQKTFIPFPAGYRGYPTVSMLTDAVNESGITPVRLGEESITQL 265
Query: 171 VRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPK-------TGSSASVPC 223
+ + D +++ + S GE K GE K T PC
Sbjct: 266 LDMLCYDGKLVALNS---GEMYKSVKNPEAVKQSQARKPAGEDKGIDDRLVTNGMTEAPC 322
Query: 224 GVCPQINFCTPDGVISPKTCVYYTKWLD 251
G CP C P G +SP++C Y+ WL+
Sbjct: 323 GTCPVFKLCAPGGAVSPESCEYFDPWLE 350
>gi|326477655|gb|EGE01665.1| DNA-directed RNA polymerase III subunit RPC6 [Trichophyton equinum
CBS 127.97]
Length = 357
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 119/259 (45%), Gaps = 44/259 (16%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+L ERL+Y+VI S ++ GIWT+ +K + NL I+ + +KSL+ K+ +K V N+
Sbjct: 95 NLNGEERLVYNVIHSTGRN-GIWTKIIKT--RTNLHQTIMNRCLKSLEAKNYVKSVRNVK 151
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVV------------------KSQCL 134
+K M +PS++I+GGAW+++G LD +FI+ + + Q
Sbjct: 152 YPSRKIYMLSGLQPSEEITGGAWFTDGVLDADFIRGLSGWIEHWVSARSWNSPGAEDQPK 211
Query: 135 KQIIKLKV-----------------ATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLD 177
+ KL+ T I+ +I SG V + + I ++++ + D
Sbjct: 212 GKKRKLQADDSETQYIPYLSSYQGHPTTADITKAINGSGLTPVTMDEGSISQLLQMLCYD 271
Query: 178 NQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSS------ASVPCGVCPQINF 231
+++ ++ + P +++ G G GS+ PCG CP +
Sbjct: 272 GRLVSLRDGAAYRSVKKPNEISLQRDLGLQGPDGGANEGSALGSNGMTEAPCGQCPVFSL 331
Query: 232 CTPDGVISPKTCVYYTKWL 250
C P G ++ + C Y+ +WL
Sbjct: 332 CRPGGPVNAENCEYFDEWL 350
>gi|296810958|ref|XP_002845817.1| DNA-directed RNA polymerase III subunit RPC6 [Arthroderma otae CBS
113480]
gi|238843205|gb|EEQ32867.1| DNA-directed RNA polymerase III subunit RPC6 [Arthroderma otae CBS
113480]
Length = 358
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 119/261 (45%), Gaps = 47/261 (18%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+L ERL+Y+VI S ++ GIWT+ +K + NL I+ + +KSL+ K+ +K V N+
Sbjct: 95 NLNGEERLVYNVIHSTGRN-GIWTKIIKT--RTNLHQTIMNRCLKSLEAKNYVKSVRNVK 151
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEG----- 147
+K M +PS++I+GGAW+++G LD +FI+ + S ++ + + G
Sbjct: 152 YPSRKIYMLSGLQPSEEITGGAWFTDGVLDADFIRGL-SGWIEHWVSARSWNAPGGEDQL 210
Query: 148 -------------------------------ISDSIKRSGAFKVDLTKQQIEEIVRAVVL 176
I+ +I SG V + + I ++++ +
Sbjct: 211 KGKKRKAQADDSETQYIPYLPSYQGHPTTADITKAINGSGLTPVTMDEGSISQLLQMLCY 270
Query: 177 DNQIMEVKSNGSGEFTNIPVGKVCYKNVS-----KGGGGGEPKTGSSA--SVPCGVCPQI 229
D +++ ++ + P +++ G P GS+ PCG CP
Sbjct: 271 DGRLVSLRDGAAYRSVKKPNEISLQRDLGLQGPDSGATNEGPSLGSNGMTEAPCGQCPVF 330
Query: 230 NFCTPDGVISPKTCVYYTKWL 250
+ C P G ++P+ C Y+ +WL
Sbjct: 331 SLCRPGGPVNPENCEYFDEWL 351
>gi|255955101|ref|XP_002568303.1| Pc21g12760 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590014|emb|CAP96173.1| Pc21g12760 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 350
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 121/271 (44%), Gaps = 62/271 (22%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+LT E ++Y+VI S ++ GIW R + + NL +I+ + +KSL+ K+ IK + N+
Sbjct: 85 NLTPDEAMVYNVIHSTER-TGIWVRHIGN--RTNLHKSILDRCLKSLEGKNYIKSLHNVK 141
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQII-------------- 138
+K M PS++++GGAW+++G LD FI V +
Sbjct: 142 YPSRKMYMLAGLAPSEEVTGGAWFTDGVLDANFINSVAGYIEYTVSRKSWYEVPASDRKK 201
Query: 139 KLKVA------------------------TLEGISDSIKRSGAFKVDLTKQQIEEIVRAV 174
++K A T+ I+ ++ SG V L ++ I +++ +
Sbjct: 202 RIKTASGKAEVRSDEKTYLPYPHGYTGYPTVAQITSAVNDSGITPVRLGEESIVQLLEML 261
Query: 175 VLDNQIMEVKSNGSGE-FTNIPVGKVCYKNVSKGGGGGEPKTGSSASV------------ 221
DN+++ + G+GE + ++ + N S+ P G SV
Sbjct: 262 CYDNKLVAL---GNGEWYRSLKNPEAVKANQSRKA----PIEGDDLSVANKHLVKNGMTE 314
Query: 222 -PCGVCPQINFCTPDGVISPKTCVYYTKWLD 251
PCG CP C P G +SP+TC Y+ WL+
Sbjct: 315 APCGQCPVFKLCAPGGAVSPETCEYFDPWLN 345
>gi|66824061|ref|XP_645385.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
gi|74861297|sp|Q86JM3.1|RPC6_DICDI RecName: Full=DNA-directed RNA polymerase III subunit rpc6;
Short=RNA polymerase III subunit C6; AltName:
Full=DNA-directed RNA polymerase III subunit F
gi|60473501|gb|EAL71445.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
Length = 293
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 117/247 (47%), Gaps = 39/247 (15%)
Query: 21 KRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQ 80
K P+ A L + LIY +I ++ + G WTR++K +TK +K+L+
Sbjct: 62 KEVNPEDQAKFRGLGVEDFLIYQLIEASS-NTGAWTRELKNSSGYQQVQ--ITKILKTLE 118
Query: 81 NKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKL 140
++ LIK V +I + KK M EPS++I+GG YS+ S D ++I+++K +K +
Sbjct: 119 SRKLIKSVKSIQSGRKKVYMLYNMEPSREITGGQLYSDQSYDHQYIQIMKMH-IKTFVDN 177
Query: 141 KVAT-LEGISDSIKRSG--AFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEF------ 191
K A L I +++ A L + I+ +V V+ D I E++ G
Sbjct: 178 KGAVDLADIITYLRKVAEEATSQSLGPEDIQALVNTVIYDGDIEEMRDTRMGAMLGRRSG 237
Query: 192 -------TNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCV 244
T IPV C ++PCG CP + C+ +G++SPK CV
Sbjct: 238 ILYKPTKTPIPVNNFC-------------------NMPCGNCPVFDICSDNGLVSPKRCV 278
Query: 245 YYTKWLD 251
Y+ ++L+
Sbjct: 279 YFKQYLE 285
>gi|213407148|ref|XP_002174345.1| DNA-directed RNA polymerase III subunit RPC6 [Schizosaccharomyces
japonicus yFS275]
gi|212002392|gb|EEB08052.1| DNA-directed RNA polymerase III subunit RPC6 [Schizosaccharomyces
japonicus yFS275]
Length = 301
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 115/233 (49%), Gaps = 39/233 (16%)
Query: 38 ERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKK 97
E+++Y+ I+ + + GIWT+ +K +K NL +V + +KSL++K+L+K + ++ + +K
Sbjct: 87 EQIVYNFIKGSGNE-GIWTKTLK--MKTNLHMTVVNRCLKSLESKNLVKSIKSVKHPTRK 143
Query: 98 HLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEG---------- 147
M + PS +I+GG W+++ LD EFI +K K I + +
Sbjct: 144 IYMLYDLAPSSEITGGPWFTDQELDIEFINNLKKVVYKYIHSKSYPSKKNHKGSDLLWSV 203
Query: 148 ----------ISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVG 197
I D ++ + +VDL+ + +V +V D ++ E + +G+
Sbjct: 204 DYNGYPSAIQIHDWLRSTNITEVDLSLANVMSLVDVLVYDGKV-EKRPDGT--------- 253
Query: 198 KVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
++ V + G + T S PCG CP + C DG +SP TC Y+ KWL
Sbjct: 254 --TFRAVRQVEGTIDGYTES----PCGKCPLNDVCAVDGPVSPMTCEYFDKWL 300
>gi|156551159|ref|XP_001604309.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Nasonia vitripennis]
Length = 305
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 111/254 (43%), Gaps = 40/254 (15%)
Query: 19 MSKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKS 78
+ K K P + + ER++Y +I + GIWTRD++ K NL + K +KS
Sbjct: 72 LYKLKDPTKARTAKGADNEERIVYTIIEE-AGNKGIWTRDIR--FKSNLMPTQLNKILKS 128
Query: 79 LQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQII 138
L+ K +IK V ++ KK M EP + ++GGAWY + + EF+ V+ QC + +
Sbjct: 129 LETKKIIKAVKSVAASKKKVFMLYNLEPDRSVTGGAWYQDQDFEAEFVDVLNQQCYRFLE 188
Query: 139 KLKVATLEGISDSIKRSGAF-----------------KVDLTKQQIEEIVRAVVLDNQIM 181
+ + +T I+ I A KV L+ + +E I+ ++ D ++
Sbjct: 189 QKRESTKNYINGPIAEKNATFASSKEVWKFISDLGISKVKLSVEDLEMILNTLIYDGKVE 248
Query: 182 E-VKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASV--PCGVCPQINFCTPDGVI 238
V S+GS + I P S V CGVCP C G
Sbjct: 249 RTVSSDGSSLYRAI-----------------NPLLNSPGLVQSSCGVCPVRKNCCDFGDT 291
Query: 239 SPKTCVYYTKWLDF 252
+P C Y T+WLD
Sbjct: 292 TPLKCQYITEWLDM 305
>gi|67904276|ref|XP_682394.1| hypothetical protein AN9125.2 [Aspergillus nidulans FGSC A4]
gi|40742768|gb|EAA61958.1| hypothetical protein AN9125.2 [Aspergillus nidulans FGSC A4]
gi|259485459|tpe|CBF82499.1| TPA: DNA-directed RNA polymerase III subunit Rpc34, putative
(AFU_orthologue; AFUA_7G01850) [Aspergillus nidulans
FGSC A4]
Length = 359
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 135/310 (43%), Gaps = 78/310 (25%)
Query: 4 SFTDLYLLGLAKGSG--MSKRKRPDSNAPS-DSLTDHERLIYDVIRSNKQDMGIWTRDMK 60
S D LL L +G ++ + P +A +L+ E L+Y+VI S + GIW R ++
Sbjct: 57 SLVDQKLLRLLQGKNDRLAWKLIPREDAEKLQNLSPDESLVYNVIHSTGRS-GIWVRAIQ 115
Query: 61 RELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGS 120
+ NL +I+ + +KSL+ K+ IK V N+ +K M PS+D++GGAW+++G
Sbjct: 116 N--RTNLHKSILDRCLKSLEGKNYIKSVHNVKFPSRKMYMLAGLAPSEDVTGGAWFTDGV 173
Query: 121 LDTEFIKVVKSQCLKQIIK----------------LKVA--------------------- 143
LD FI VV + K LK A
Sbjct: 174 LDENFIGVVSGFIEFSVSKKSWYEVPASDKSRHKRLKTADGSAATTVKKEGSQKEYLPYP 233
Query: 144 -------TLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPV 196
T+ ++ ++ +SG V L ++ + +++ + DN+++ + +GE+
Sbjct: 234 PGYTGYPTIAMLTAAVNQSGITPVRLGEESVTQLLEMLCYDNKLVALN---NGEY----- 285
Query: 197 GKVCYKNVS-----KGGGGGEPKTGSSAS-----------VPCGVCPQINFCTPDGVISP 240
YK++ K +P +A+ VPCG CP N C P G +SP
Sbjct: 286 ----YKSLKNPEEVKARQARKPDEELAAADDRLVRNGMTEVPCGNCPVFNLCVPGGAVSP 341
Query: 241 KTCVYYTKWL 250
+ C Y+ W+
Sbjct: 342 ENCEYFETWI 351
>gi|399217542|emb|CCF74429.1| unnamed protein product [Babesia microti strain RI]
Length = 296
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 117/223 (52%), Gaps = 22/223 (9%)
Query: 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSL-QNKSLIKEVVN 90
D L D + +Y I ++GIWT D+++ L + V K+IK L + K LIK V +
Sbjct: 87 DKLDDVDYRVYCAIEQ-AGNVGIWTADIRK--FTGLLIHQVQKAIKMLAEEKGLIKPVKD 143
Query: 91 IHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISD 150
IH+K +K M E +P+ +I+GG++YS G D ++ ++ Q + ++K + +T+E I+
Sbjct: 144 IHHKNRKLYMLAEIDPAVEIAGGSFYSNGDFDESLVETLRDQISRFLMKFQGSTIEKITQ 203
Query: 151 SIKRSGAFKVD-LTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGG 209
IK F D ++++ IE+IV+ ++L+N K+ + N + C G
Sbjct: 204 YIK---GFVCDKVSQEDIEKIVQILILEN-----KAYSAISANNTMIYIWC-------GD 248
Query: 210 GGEPKTGSSASVPCGVCPQINFCTPDGV--ISPKTCVYYTKWL 250
S +VPC CP ++ C D + ++P C+Y +WL
Sbjct: 249 AQLETLTYSYNVPCFTCPLLDQCEIDRLYKVNPGDCIYLNEWL 291
>gi|195053568|ref|XP_001993698.1| GH19703 [Drosophila grimshawi]
gi|193895568|gb|EDV94434.1| GH19703 [Drosophila grimshawi]
Length = 294
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 117/252 (46%), Gaps = 41/252 (16%)
Query: 20 SKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSL 79
+K + S P D+ + E+++Y ++ + GIW RD++ +K NL + K +K+L
Sbjct: 64 AKDPQKKSALPKDA-DNEEKIVYSIVEEGG-NKGIWIRDIR--IKSNLNMTQLNKILKNL 119
Query: 80 QNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLK---- 135
+ K LIK V +++ KK M E + ++GGAWY + + EF+ V+ QCL+
Sbjct: 120 ETKKLIKAVKSVNASKKKVYMLYNMEADRSVTGGAWYQDQDFEVEFVDVLNQQCLRFLQM 179
Query: 136 -------------QIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIME 182
++ T++ + I G KV+L + +E I++ VV D
Sbjct: 180 KREGAEKKRDGPLAFKQMSCCTVKEVHKFISDLGISKVNLDEDDLETILKTVVYDGNAER 239
Query: 183 V-KSNGSGEF--TNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVIS 239
+ +S+G+ + N+P+ P G +PCG+CP I C+ G ++
Sbjct: 240 ILQSDGTYVYRAVNLPL----------------PAPG-LVQMPCGICPVIKNCSNCGDVT 282
Query: 240 PKTCVYYTKWLD 251
C Y WLD
Sbjct: 283 AINCQYMNDWLD 294
>gi|345565560|gb|EGX48509.1| hypothetical protein AOL_s00080g138 [Arthrobotrys oligospora ATCC
24927]
Length = 300
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 121/264 (45%), Gaps = 40/264 (15%)
Query: 9 YLLGLAKGSG-MSKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNL 67
YL L +G + K D + +LT E L+Y I S ++ GIW++ +K + NL
Sbjct: 52 YLRTLKQGDAYVYKFVSKDEVDRTRNLTPDEALVYQHIESAARE-GIWSKTLKA--RTNL 108
Query: 68 PDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIK 127
++T+ +K+L+ IK + ++ +K M + P+ +++GG W+++ LD +FI
Sbjct: 109 HPTVLTRCLKTLETHRYIKSIKSVKFPTRKIYMLWDLTPTIEVTGGPWFTDAELDADFIN 168
Query: 128 VV----------------KSQCLKQIIKLKVA-----TLEGISDSIKRSGAFKVDLTKQQ 166
+ K ++ + TL I+ +K S +V+L++
Sbjct: 169 ALLVAIERFVTARSFPKQKPGVAGMVVVFEAGYTGYPTLSDITQWVKNSNLTEVELSEAD 228
Query: 167 IEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVC 226
I+ ++ ++ D ++ V +G YK + K G K G + + PCG C
Sbjct: 229 IKALLEVLIYDGKLERV------------IGGTAYKAIRKVEGA--VKQGVTEA-PCGRC 273
Query: 227 PQINFCTPDGVISPKTCVYYTKWL 250
P + C DG I+ CVY+ KWL
Sbjct: 274 PVFDLCNEDGPINAANCVYFEKWL 297
>gi|195390233|ref|XP_002053773.1| GJ24071 [Drosophila virilis]
gi|194151859|gb|EDW67293.1| GJ24071 [Drosophila virilis]
Length = 293
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 114/249 (45%), Gaps = 35/249 (14%)
Query: 20 SKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSL 79
+K + S P D+ + E+++Y ++ + GIW RD++ +K NL + K +K+L
Sbjct: 63 AKDPQKKSALPKDA-DNEEKIVYSIVEEGG-NKGIWIRDIR--MKSNLNMTQLNKILKNL 118
Query: 80 QNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLK---- 135
+ K LIK V +++ KK M E + ++GGAWY + + EF+ V+ QCL+
Sbjct: 119 ETKKLIKAVKSVNASKKKVYMLYNMEADRSVTGGAWYQDQDFEVEFVDVLNQQCLRFLQM 178
Query: 136 -------------QIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIME 182
++ T++ + I G KV+L + +E I++ VV D
Sbjct: 179 KREGAEKKRDGPLAFKQMSCCTVKEVHKFISDLGISKVNLDEDDLETILKTVVYD----- 233
Query: 183 VKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKT 242
GS E G Y+ V+ P G +PCG+CP I C+ G ++
Sbjct: 234 ----GSAERILQSDGTYVYRAVNL----PLPAPG-LVQMPCGICPVIKNCSNCGDVTAIN 284
Query: 243 CVYYTKWLD 251
C Y WL+
Sbjct: 285 CQYMNDWLE 293
>gi|384493398|gb|EIE83889.1| hypothetical protein RO3G_08594 [Rhizopus delemar RA 99-880]
Length = 304
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 109/243 (44%), Gaps = 42/243 (17%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
L D RL+Y+ IRS+ + GIWT+D+K+ NL ++ +++K L+ K IK V ++
Sbjct: 80 LNDDARLVYNAIRSS-GNTGIWTKDLKK--ATNLHTIVLNRTLKQLEQKREIKSVKHVKY 136
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDS-- 151
+K M PS +++GGA +K+ CLK I EGI D+
Sbjct: 137 PTRKIYMLFNLTPSSEVTGGA-------------CLKAACLKYITSRSFPRAEGIPDAVF 183
Query: 152 ----------------IKRSGAFKVDLTKQQIEEIVRAVVLDNQI------MEVKSNGSG 189
I S ++L+ + IE I+ +V D + M + S
Sbjct: 184 GAEHEHYPTASEVKRFITESRISSIELSVKDIESILNILVYDGDVEKKMPFMADMEDFSD 243
Query: 190 EFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKW 249
+ + + + YK + K +T + PCG CP +FC DG ISP C YY W
Sbjct: 244 DEEDNGLVQWSYKAIKKAVNRLSAETFTE--TPCGKCPVFSFCVEDGPISPMNCEYYKVW 301
Query: 250 LDF 252
L++
Sbjct: 302 LNW 304
>gi|315051752|ref|XP_003175250.1| DNA-directed RNA polymerase III subunit RPC6 [Arthroderma gypseum
CBS 118893]
gi|311340565|gb|EFQ99767.1| DNA-directed RNA polymerase III subunit RPC6 [Arthroderma gypseum
CBS 118893]
Length = 357
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 119/259 (45%), Gaps = 44/259 (16%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+L ERL+Y+VI S ++ GIWT+ +K + NL I+ + +K+L+ K+ +K V N+
Sbjct: 95 NLNGEERLVYNVIHSTGRN-GIWTKIIKT--RTNLHQTIMNRCLKTLEAKNYVKSVRNVK 151
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVV----------------------- 129
+K M +PS++I+GGAW+++G LD +FI+ +
Sbjct: 152 YPSRKIYMLSGLQPSEEITGGAWFTDGVLDADFIRGLSGWIEHWVSARSWNSPGAEDQPK 211
Query: 130 -----------KSQCLKQIIKLK-VATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLD 177
++Q + + + T I+ +I SG V + + I ++++ + D
Sbjct: 212 GKKRKAQADDSETQYIPYLPSYQGHPTTADITKAINGSGLTPVTMDEGSISQLLQMLCYD 271
Query: 178 NQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSS------ASVPCGVCPQINF 231
+++ ++ + P +++ G G K S+ PCG CP +
Sbjct: 272 GRLVSLRDGAAYRSVKKPNEISLQRDLGLQGPDGGAKESSTLGSNGMTDAPCGRCPVFSL 331
Query: 232 CTPDGVISPKTCVYYTKWL 250
C P G ++ + C Y+ +WL
Sbjct: 332 CHPGGPVNAENCEYFDEWL 350
>gi|322791297|gb|EFZ15814.1| hypothetical protein SINV_06955 [Solenopsis invicta]
Length = 306
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 118/260 (45%), Gaps = 38/260 (14%)
Query: 11 LGLAKGSGMSKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDN 70
L K +G+ + D + + E+++Y +I + GIWTRD++ K NL
Sbjct: 66 FDLFKQAGLLFYRLKDPTKLAKCADNEEKIVYRIIEE-AGNKGIWTRDIR--FKSNLMHT 122
Query: 71 IVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVK 130
+ K +KSL+ K IK V + KK M EP + ++GGAWY + +TEF+ V+
Sbjct: 123 QLQKILKSLETKKFIKVVKPVAASKKKVYMLYNLEPDESVTGGAWYQDQDFETEFVDVLN 182
Query: 131 SQCLKQIIK-----------------LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRA 173
QC + + + + A+ + + I G KV L+ +E I+
Sbjct: 183 QQCYRFLEQKKERVKNCNAGPIAARNMTFASSKEVWKFISDLGISKVKLSITNMEMILNT 242
Query: 174 VVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASV--PCGVCPQINF 231
+V D + V+ +G+ +N+ YK + +P S + PCG+CP
Sbjct: 243 LVYDGK---VERTLAGDGSNL------YKAI-------QPLLNSPGLIRTPCGLCPVKRQ 286
Query: 232 CTPDGVISPKTCVYYTKWLD 251
C +G I+P C Y +WL+
Sbjct: 287 CHDEGSITPIKCQYIKEWLE 306
>gi|328873437|gb|EGG21804.1| RNA polymerase III subunit [Dictyostelium fasciculatum]
Length = 279
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 107/209 (51%), Gaps = 13/209 (6%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
L+ E LIY +I +K D G WT+DM+ + NL +TK IK+L+ + LIK V I
Sbjct: 76 LSADEMLIYQIIEDSK-DKGAWTKDMRGQ--TNLQQVQITKIIKTLETRKLIKAVKTIDA 132
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEG-SLDTEFIKVVKSQCLKQIIKLKVATLEGISDSI 152
KK M+ EPS+D++GG+ YS G +LD E I +K C I A + + + +
Sbjct: 133 GKKKVYMSYSMEPSRDLTGGSLYSGGQTLDQELINAMKWSCSSFISNKGAADISEVMNYL 192
Query: 153 KRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGE-FTNIPVGKVCYKNVSKGGGGG 211
K+ G + DLT++ I ++ +++ D + E++ + + P G + YK
Sbjct: 193 KKQG--EKDLTEEDILTLLNSLIYDGLVEEMRDTRAKHVLSRKPTG-IIYKPTKT----- 244
Query: 212 EPKTGSSASVPCGVCPQINFCTPDGVISP 240
+ +PCG CP + C+ G I+P
Sbjct: 245 KIPENHFTKMPCGNCPVFHLCSEVGEITP 273
>gi|258575987|ref|XP_002542175.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237902441|gb|EEP76842.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 361
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 120/264 (45%), Gaps = 49/264 (18%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+L ER++Y+VI S + G+WT+ +K + NL I+ + +KSL+ K+ IK V N+
Sbjct: 95 NLNAEERMVYNVIHSTGR-QGVWTKTIKA--RTNLHQTIMNRCLKSLEAKNYIKSVRNVK 151
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVV-----------------KSQCLK 135
+K M +PS++++GGAW+++G LD +FI + K+ K
Sbjct: 152 YPQRKIYMLAGLQPSEEVTGGAWFTDGILDADFIHSLGVWIERWISARSWHDTEKADRQK 211
Query: 136 QIIKLKVA-------------------TLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVL 176
+ KL A T+ I+ +I SG V L + I +++ +
Sbjct: 212 KKRKLDEASKPTEPQYLPYLPTYTGYPTVTDITKAINASGLTPVTLGEGSIAQLLEMLCY 271
Query: 177 DNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKT--------GSSA--SVPCGVC 226
D +++ ++ + + P + + G G + T GS+ VPCG C
Sbjct: 272 DGRLVSLRDGAAYKSVKKPNQISLQRELGFQGPGADKGTSDQDQLALGSNGMTEVPCGRC 331
Query: 227 PQINFCTPDGVISPKTCVYYTKWL 250
P + C G I+ + C Y+ +WL
Sbjct: 332 PVFSLCHEGGPINAENCEYFQEWL 355
>gi|325092598|gb|EGC45908.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H88]
Length = 363
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 115/273 (42%), Gaps = 65/273 (23%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+L ERLIY V+ S + G+WTR +K + NL IV + +KSL+ K+ IK V N+
Sbjct: 95 NLNAEERLIYSVVESTGRS-GVWTRTIKS--RTNLHQTIVNRCLKSLETKNYIKSVRNVK 151
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIK-------------------VVKSQC 133
+K M +PS+D++GGAW+++G LD++FI+ + +
Sbjct: 152 YPQRKMYMLSGLQPSEDVTGGAWFTDGVLDSDFIRGLGGWIEHWVSSRSWYDRGAAERKA 211
Query: 134 LKQIIKLK------------------VATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVV 175
+Q I+ T+ I+++I SG V + + I +++ +
Sbjct: 212 KRQKIRPDNNTKGEPQYLPYLPSYNGYPTVSDITNAINNSGLTPVTMGESSIAQLLEMLC 271
Query: 176 LDNQIMEVKSNGSGEFTNIP------------------VGKVCYKNVSKGGGGGEPKTGS 217
D +++ ++ + + P K N++ GG G
Sbjct: 272 FDGKLISLRDGAAYKSVKKPHQISLQRDLGLQTGDQTDQDKADQDNLTLGGNG------- 324
Query: 218 SASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
PCG CP C G ++ + C Y+ W+
Sbjct: 325 MTEAPCGRCPVFALCEEGGPVNAENCEYFDAWI 357
>gi|154279638|ref|XP_001540632.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150412575|gb|EDN07962.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 363
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 115/273 (42%), Gaps = 65/273 (23%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+L ERLIY V+ S + G+WTR +K + NL IV + +KSL+ K+ IK V N+
Sbjct: 95 NLNAEERLIYSVVESTGRS-GVWTRTIKS--RTNLHQTIVNRCLKSLETKNYIKSVRNVK 151
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIK-------------------VVKSQC 133
+K M +PS+D++GGAW+++G LD++FI+ + +
Sbjct: 152 YPQRKMYMLSGLQPSEDVTGGAWFTDGVLDSDFIRGLGGWIEHWVSSRSWYDRGAAERKA 211
Query: 134 LKQIIKLK------------------VATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVV 175
+Q I+ T+ I+++I SG V + + I +++ +
Sbjct: 212 KRQKIRPDNNTKGEPQYLPYLPSYNGYPTVSDITNAINNSGLTPVTMGESSIAQLLEMLC 271
Query: 176 LDNQIMEVKSNGSGEFTNIP------------------VGKVCYKNVSKGGGGGEPKTGS 217
D +++ ++ + + P K N++ GG G
Sbjct: 272 FDGKLISLRDGAAYKSVKKPNQISLQRDLGLQTGDQTDQDKADQDNLTLGGNG------- 324
Query: 218 SASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
PCG CP C G ++ + C Y+ W+
Sbjct: 325 MTEAPCGRCPVFALCEEGGPVNAENCEYFDAWI 357
>gi|225562662|gb|EEH10941.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 363
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 115/273 (42%), Gaps = 65/273 (23%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+L ERLIY V+ S + G+WTR +K + NL IV + +KSL+ K+ IK V N+
Sbjct: 95 NLNAEERLIYSVVESTGRS-GVWTRTIKS--RTNLHQTIVNRCLKSLETKNYIKSVRNVK 151
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIK-------------------VVKSQC 133
+K M +PS+D++GGAW+++G LD++FI+ + +
Sbjct: 152 YPQRKMYMLSGLQPSEDVTGGAWFTDGVLDSDFIRGLGGWIEHWVSSRSWYDRGAAERKA 211
Query: 134 LKQIIKLK------------------VATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVV 175
+Q I+ T+ I+++I SG V + + I +++ +
Sbjct: 212 KRQKIRPDNNTKGEPQYLPYLPSYNGYPTVSDITNAINNSGLTPVTMGESSIAQLLEMLC 271
Query: 176 LDNQIMEVKSNGSGEFTNIP------------------VGKVCYKNVSKGGGGGEPKTGS 217
D +++ ++ + + P K N++ GG G
Sbjct: 272 FDGKLISLRDGAAYKSVKKPHQISLQRDLGLQTSDQTDQDKADQDNLTLGGNG------- 324
Query: 218 SASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
PCG CP C G ++ + C Y+ W+
Sbjct: 325 MTEAPCGRCPVFALCEEGGPVNAENCEYFDAWI 357
>gi|240279468|gb|EER42973.1| RNA polymerase III subunit Rpc34 [Ajellomyces capsulatus H143]
Length = 363
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 115/273 (42%), Gaps = 65/273 (23%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+L ERLIY V+ S + G+WTR +K + NL IV + +KSL+ K+ IK V N+
Sbjct: 95 NLNAEERLIYSVVESTGRS-GVWTRTIKS--RTNLHQTIVNRCLKSLETKNYIKSVRNVK 151
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIK-------------------VVKSQC 133
+K M +PS+D++GGAW+++G LD++FI+ + +
Sbjct: 152 YPQRKMYMLSGLQPSEDVTGGAWFTDGVLDSDFIRGLGGWIEHWVSSRSWYDRGAAERKA 211
Query: 134 LKQIIKLK------------------VATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVV 175
+Q I+ T+ I+++I SG V + + I +++ +
Sbjct: 212 KRQKIRPDNNTKGEPQYLPYLPSYNGYPTVSDITNAINSSGLTPVTMGESSIAQLLEMLC 271
Query: 176 LDNQIMEVKSNGSGEFTNIP------------------VGKVCYKNVSKGGGGGEPKTGS 217
D +++ ++ + + P K N++ GG G
Sbjct: 272 FDGKLISLRDGAAYKSVKKPHQISLQRDLGLQTGDQTDQDKADQDNLTLGGNG------- 324
Query: 218 SASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
PCG CP C G ++ + C Y+ W+
Sbjct: 325 MTEAPCGRCPVFALCEEGGPVNAENCEYFDAWI 357
>gi|424513015|emb|CCO66599.1| DNA-directed RNA polymerase III subunit RPC6 [Bathycoccus prasinos]
Length = 463
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 88/147 (59%), Gaps = 3/147 (2%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
L+ +RL+ VI + + G+WT+++K+ K N P VTK K+L+ + LIK V ++
Sbjct: 118 LSSEDRLVLQVIET-AGNSGMWTKEVKQ--KTNFPQVKVTKIFKTLEQRKLIKSVKHVAQ 174
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIK 153
+ +K M + EPS++I+GGAW+++ D +F+K+++ C I K K TL+ + + I
Sbjct: 175 QNRKVYMKYDLEPSREITGGAWFTDQEFDAKFVKIMRDVCRDFIRKEKRVTLQDVYEHIV 234
Query: 154 RSGAFKVDLTKQQIEEIVRAVVLDNQI 180
+S V+L K+ +++IV + D +
Sbjct: 235 KSKISNVNLRKEDVKQIVDTLFYDGDV 261
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 221 VPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
VPCG+C C P G+ISP+ C Y +W+
Sbjct: 406 VPCGICTVYQECEPGGLISPEKCPYMDRWI 435
>gi|66509068|ref|XP_624984.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Apis
mellifera]
Length = 311
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 116/264 (43%), Gaps = 41/264 (15%)
Query: 7 DLYLLGLAKGSGMSKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVN 66
DL+ G GS + + K P + + E+++Y +I + GIW RD++ K N
Sbjct: 70 DLFKQG---GSLLYRLKDPSKAKIAKGADNEEKIVYTIIEE-AGNKGIWIRDIR--FKSN 123
Query: 67 LPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
L + K +KSL+ K IK V ++ KK M EP ++GGAWY + + EF+
Sbjct: 124 LMPTQLNKILKSLETKKFIKAVKSVAASKKKVYMLYNLEPDTSVTGGAWYQDQDFEAEFV 183
Query: 127 KVVKSQCLKQIIKLK-----------------VATLEGISDSIKRSGAFKVDLTKQQIEE 169
V+ QC + + K K A+ + + I G KV L+ + +E
Sbjct: 184 DVLNQQCYRFLEKKKEQMNSCGGGPIMARNVTFASSKEVWKFISDLGISKVKLSVEDLEM 243
Query: 170 IVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASV--PCGVCP 227
I+ +V D + V+ SG+ G Y+ V EP + CGVCP
Sbjct: 244 ILNTLVYDGK---VERTLSGD------GNTLYRAV-------EPLLNPPGLIKSTCGVCP 287
Query: 228 QINFCTPDGVISPKTCVYYTKWLD 251
C G ++P C Y T+WL+
Sbjct: 288 VRKNCCDVGDVTPTKCQYITEWLE 311
>gi|380025937|ref|XP_003696719.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC6-like [Apis florea]
Length = 311
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 116/264 (43%), Gaps = 41/264 (15%)
Query: 7 DLYLLGLAKGSGMSKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVN 66
DL+ G GS + + K P + + E+++Y +I + GIW RD++ K N
Sbjct: 70 DLFKQG---GSLLYRLKDPSKAKIAKGADNEEKIVYTIIEE-AGNKGIWIRDIR--FKSN 123
Query: 67 LPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
L + K +KSL+ K IK V ++ KK M EP ++GGAWY + + EF+
Sbjct: 124 LMPTQLNKILKSLETKKFIKAVKSVAASKKKVYMLYNLEPDTSVTGGAWYQDQDFEAEFV 183
Query: 127 KVVKSQCLKQIIKLK-----------------VATLEGISDSIKRSGAFKVDLTKQQIEE 169
V+ QC + + K K A+ + + I G KV L+ + +E
Sbjct: 184 DVLNQQCYRFLEKKKSKXNSCGGGPIMARNVTFASSKEVWKFISDLGISKVKLSVEDLEM 243
Query: 170 IVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASV--PCGVCP 227
I+ +V D + V+ SG+ G Y+ V EP + CGVCP
Sbjct: 244 ILNTLVYDGK---VERTLSGD------GNTLYRAV-------EPLLNPPGLIKSTCGVCP 287
Query: 228 QINFCTPDGVISPKTCVYYTKWLD 251
C G ++P C Y T+WL+
Sbjct: 288 VRKNCCDVGDVTPTKCQYITEWLE 311
>gi|389612872|dbj|BAM19835.1| DNA-directed RNA polymerase III, 34kD-subunit, partial [Papilio
xuthus]
Length = 286
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 124/256 (48%), Gaps = 35/256 (13%)
Query: 1 MKYSFTDLYLLGLAKGSGMSKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMK 60
++ DLY G GS + + K S + E+++Y++I + + GIW RD++
Sbjct: 50 LQEGLFDLYNQG---GSLIYRLKGQTSKQAVKGADNEEKVVYNLIE-DAGNKGIWIRDIR 105
Query: 61 RELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGS 120
L+ N+ + +TK +K+L++K +IK V ++ KK M EP + ISGGAWY +
Sbjct: 106 --LRSNIANTQLTKVLKNLESKKVIKAVKCVNASKKKVYMLYNLEPDRSISGGAWYQDQD 163
Query: 121 LDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRS------GAFKVDLTKQQIEEIVRAV 174
++EF+ ++ QCL+ L+ +D IK + G + + ++++ + +
Sbjct: 164 FESEFVDILNRQCLR--------FLQQRADKIKNNPKGPVVGRTQSFASAVEVQKYITDL 215
Query: 175 VLDNQIMEVKS----------NGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCG 224
+ N +EV+ +G E + +P G Y+ + P G VPCG
Sbjct: 216 GISNVKLEVEDVITILNTLVYDGKAESSVLPDGTKVYRAIE----SLIPPPG-LVQVPCG 270
Query: 225 VCPQINFCTPDGVISP 240
VCP I C G+I+P
Sbjct: 271 VCPLILKCCSTGLITP 286
>gi|224073136|ref|XP_002303989.1| predicted protein [Populus trichocarpa]
gi|222841421|gb|EEE78968.1| predicted protein [Populus trichocarpa]
Length = 89
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 58/87 (66%)
Query: 133 CLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFT 192
C QI KLKVAT E ++ I VD+TKQ IEEIVR +VLD IMEVKSNG EF
Sbjct: 3 CTNQIKKLKVATEEEVAGLINSCQDSDVDVTKQHIEEIVRTLVLDYAIMEVKSNGMAEFA 62
Query: 193 NIPVGKVCYKNVSKGGGGGEPKTGSSA 219
+IP+GKVC K +SK G G+PK + A
Sbjct: 63 SIPIGKVCCKCISKEGLEGKPKAETEA 89
>gi|383863773|ref|XP_003707354.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Megachile rotundata]
Length = 310
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 117/264 (44%), Gaps = 41/264 (15%)
Query: 7 DLYLLGLAKGSGMSKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVN 66
DL+ G GS + + K P + + E+++Y +I + GIW RD++ K N
Sbjct: 69 DLFKQG---GSLLYRLKDPSKAKVAKGADNEEKIVYTIIEE-AGNKGIWIRDIR--FKSN 122
Query: 67 LPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
L + K +KSL+ K IK V ++ KK M EP ++GGAWY + + EF+
Sbjct: 123 LMPTQLNKILKSLETKKFIKAVKSVAASKKKVYMLYNLEPDTSVTGGAWYQDQDFEAEFV 182
Query: 127 KVVKSQCLKQIIK-----------------LKVATLEGISDSIKRSGAFKVDLTKQQIEE 169
V+ QC + + K + A+ + + I G KV L+ +E
Sbjct: 183 DVLNQQCYRFLEKKREQINSSKGGPIIARNVTFASSKEVWKFISDLGISKVKLSVDDLEM 242
Query: 170 IVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASV--PCGVCP 227
I+ +V D + V+ SG+ +N+ Y+ V EP + CGVCP
Sbjct: 243 ILNTLVYDGK---VERTLSGDGSNL------YRAV-------EPLLNPPGLIKSTCGVCP 286
Query: 228 QINFCTPDGVISPKTCVYYTKWLD 251
C G ++P C Y T+WL+
Sbjct: 287 VRKNCCDVGDVTPTKCQYITEWLE 310
>gi|384496643|gb|EIE87134.1| hypothetical protein RO3G_11845 [Rhizopus delemar RA 99-880]
Length = 296
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 85/165 (51%), Gaps = 21/165 (12%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
L D RL+Y+ IR+ + GIWT+D+K+ NL ++ +++K L+ K IK V ++
Sbjct: 84 LNDDARLVYNTIRAAGNN-GIWTKDLKK--TTNLHTIVLNRTLKQLEQKQEIKAVKHVKY 140
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDS-- 151
+K M PS +++GGAWY++ LDTEFI +K+ CLK I +EGI D+
Sbjct: 141 PTRKIYMLFNLTPSSEVTGGAWYTDQELDTEFIDSLKAACLKYIASRSFPRIEGIPDAVF 200
Query: 152 ----------------IKRSGAFKVDLTKQQIEEIVRAVVLDNQI 180
I S +DL+ + IE I+ +V D I
Sbjct: 201 GADHEHYATASEVRRFITESRISSIDLSVKDIESILDILVYDGDI 245
>gi|291001191|ref|XP_002683162.1| predicted protein [Naegleria gruberi]
gi|284096791|gb|EFC50418.1| predicted protein [Naegleria gruberi]
Length = 245
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 114/221 (51%), Gaps = 15/221 (6%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
LTD + IY +I + + GIW + + ++ K N D + K +K+L++K LI+++ +I
Sbjct: 38 LTDEQIGIYQMIELSG-NKGIWKKSISKKAKKNEKD--LEKILKALESKQLIRKISDITQ 94
Query: 94 KGKKHL--MAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDS 151
K + +A EPSK+I+GG WY +G ++E + ++++ + + K T E +
Sbjct: 95 KKGTQIVYIASHIEPSKEITGGIWYIDGKFNSELVDKLRTETITYLEKKPKRTHEVLEHI 154
Query: 152 IKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGG 211
+ VDL +++++ +V D + ++ N + N + +V +VS
Sbjct: 155 KSLAIIDHVDLGSDDMQQVIDTLVFDGFLEKIIDNNN--VGNQSLYRVALSSVST----- 207
Query: 212 EPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
+ +PC CP + CT +G I+PKTC Y KW+DF
Sbjct: 208 ---ENAFVDIPCSTCPVFDQCTENGDITPKTCPYLKKWMDF 245
>gi|320035104|gb|EFW17046.1| DNA-directed RNA polymerase III subunit Rpc34 [Coccidioides
posadasii str. Silveira]
Length = 362
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 118/265 (44%), Gaps = 50/265 (18%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+L ERL+Y+VI S + G+WT+ +K + NL I+ + +KSL+ K+ IK V N+
Sbjct: 95 NLNAEERLVYNVIHSTGR-QGVWTKTIKA--RTNLHQTIMNRCLKSLEAKNYIKSVRNVK 151
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVV-----------------KSQCLK 135
+K M +PS++++GGAW+++G LD +FI + K+ K
Sbjct: 152 YPQRKIYMLAGLQPSEEVTGGAWFTDGVLDADFIHSLGVWIERWVSARSWYDTEKADRQK 211
Query: 136 QIIKLKVATLEG--------------------ISDSIKRSGAFKVDLTKQQIEEIVRAVV 175
+ KL+ TL+ I+ +I SG V L + I +++ +
Sbjct: 212 KKRKLENDTLKSTESQYIPYLPSYGGYPTVIDITKAINASGLTPVTLGEGSIAQLLEMLC 271
Query: 176 LDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKT--------GSSA--SVPCGV 225
D +++ ++ + + P + + G T GS+ VPCG
Sbjct: 272 YDGRLISLRDGAAYKSVKKPNQISLQRELGLQAPGAGKDTSDQDQLTLGSNGMTEVPCGR 331
Query: 226 CPQINFCTPDGVISPKTCVYYTKWL 250
CP + C G ++ + C Y+ WL
Sbjct: 332 CPVFSLCNEGGPVNAENCEYFQDWL 356
>gi|355712768|gb|AES04459.1| polymerase III polypeptide F, 39 kDa [Mustela putorius furo]
Length = 298
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 108/210 (51%), Gaps = 26/210 (12%)
Query: 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKG 95
+ E+L+Y +I + + GIW+RD++ K NLP + K +K+L++K LIK V ++
Sbjct: 97 NQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASK 153
Query: 96 KKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKR 154
KK M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R
Sbjct: 154 KKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPMIQR 213
Query: 155 SGAF----------------KVDLTKQQIEEIVRAVVLDNQI-MEVKSNGSGEFTNIPVG 197
+ +F KV+L+ + IE I+ ++ D ++ M + + G ++
Sbjct: 214 NSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGH 273
Query: 198 KVCYKNVSKGGGGGEPKTGSSASVPCGVCP 227
Y+ V+ P TG PCG+CP
Sbjct: 274 MKLYRAVNPII----PPTG-LVRAPCGLCP 298
>gi|239609703|gb|EEQ86690.1| DNA-directed RNA polymerase III subunit Rpc34 [Ajellomyces
dermatitidis ER-3]
gi|327355362|gb|EGE84219.1| DNA-directed RNA polymerase III subunit Rpc34 [Ajellomyces
dermatitidis ATCC 18188]
Length = 363
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 114/273 (41%), Gaps = 65/273 (23%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+L ERLIY V+ S + G+WTR +K + NL IV + +KSL+ K+ IK V N+
Sbjct: 95 NLNAEERLIYSVVESTGRS-GVWTRTIKS--RTNLHQTIVNRCLKSLETKNYIKSVRNVK 151
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVV----------------------- 129
+K M +PS+D++GGAW+++G LD +FI+ +
Sbjct: 152 YPQRKMYMLSGLQPSEDVTGGAWFTDGVLDADFIRGLGGWIEHWVSARSWYDRAAAERKA 211
Query: 130 -------------KSQCLKQIIKLK-VATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVV 175
+ Q L + T+ I+++I SG V + + I +++ +
Sbjct: 212 AKRQKIRPDNAKEEPQYLPYLPSYNGYPTVTDITNAINNSGLTPVTMGESSIAQLLEMLC 271
Query: 176 LDNQIMEVKSNGSGEFTNIP------------------VGKVCYKNVSKGGGGGEPKTGS 217
D +++ ++ + + P K +++ GG G
Sbjct: 272 FDGRLISLRDGAAYKSVKKPNQISLQRDLGLQTSDQTDQDKTDQDSLTLGGNG------- 324
Query: 218 SASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
PCG CP C G ++ + C Y+ +W+
Sbjct: 325 MTEAPCGRCPVFALCQEGGPVNAENCEYFDEWI 357
>gi|392867939|gb|EAS33659.2| DNA-directed RNA polymerase III subunit Rpc34 [Coccidioides immitis
RS]
Length = 362
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 117/265 (44%), Gaps = 50/265 (18%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+L ERL+Y+VI S + G+WT+ +K + NL I+ + +KSL+ K+ IK V N+
Sbjct: 95 NLNAEERLVYNVIHSTGR-QGVWTKTIKA--RTNLHQTIMNRCLKSLEAKNYIKSVRNVK 151
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVV-----------------KSQCLK 135
+K M +PS++++GGAW+++G LD +FI + K+ K
Sbjct: 152 YPQRKIYMLAGLQPSEEVTGGAWFTDGVLDADFIHSLGVWIERWVSARSWYDTEKADRQK 211
Query: 136 QIIKLK--------------------VATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVV 175
+ KL+ T+ I+ +I SG V L + I +++ +
Sbjct: 212 KKRKLENDIPKSTESQYIPYLPSYGGYPTVMDITKAINASGLTPVTLGEGSIAQLLEMLC 271
Query: 176 LDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKT--------GSSA--SVPCGV 225
D +++ ++ + + P + + G T GS+ VPCG
Sbjct: 272 YDGRLISLRDGAAYKSVKKPNQISLQRELGLQAPGAGKDTSDQDQLTLGSNGMTEVPCGR 331
Query: 226 CPQINFCTPDGVISPKTCVYYTKWL 250
CP + C G ++ + C Y+ WL
Sbjct: 332 CPVFSLCNEGGPVNAENCEYFQDWL 356
>gi|303323527|ref|XP_003071755.1| RNA polymerase Rpc34 subunit family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240111457|gb|EER29610.1| RNA polymerase Rpc34 subunit family protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 362
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 117/265 (44%), Gaps = 50/265 (18%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+L ERL+Y+VI S + G+WT+ +K + NL I+ + +KSL+ K+ IK V N+
Sbjct: 95 NLNAEERLVYNVIHSTGR-QGVWTKTIK--ARTNLHQTIMNRCLKSLEAKNYIKSVRNVK 151
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVV-----------------KSQCLK 135
+K M +PS++++GGAW+++G LD +FI + K+ K
Sbjct: 152 YPQRKIYMLAGLQPSEEVTGGAWFTDGVLDADFIHSLGVWIERWVSARSWYDTEKADRQK 211
Query: 136 QIIKLK--------------------VATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVV 175
+ KL+ T+ I+ +I SG V L + I +++ +
Sbjct: 212 KKRKLENDTPKSTESQYIPYLPSYGGYPTVIDITKAINASGLTPVTLGEGSIAQLLEMLC 271
Query: 176 LDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKT--------GSSA--SVPCGV 225
D +++ ++ + + P + + G T GS+ VPCG
Sbjct: 272 YDGRLISLRDGAAYKSVKKPNQISLQRELGLQAPGAGKDTSDQDQLTLGSNGMTEVPCGR 331
Query: 226 CPQINFCTPDGVISPKTCVYYTKWL 250
CP + C G ++ + C Y+ WL
Sbjct: 332 CPVFSLCNEGGPVNAENCEYFQDWL 356
>gi|50555584|ref|XP_505200.1| YALI0F09295p [Yarrowia lipolytica]
gi|49651070|emb|CAG78007.1| YALI0F09295p [Yarrowia lipolytica CLIB122]
Length = 282
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 109/230 (47%), Gaps = 32/230 (13%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
LT E ++Y+ I +++D GIW R + + NL N+V + +KSL+ + +IK V ++
Sbjct: 73 LTSDEYIVYNYIAESERD-GIWVRTITA--RSNLHINVVHRCLKSLEQQHIIKMVKSVQQ 129
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI----KVVKSQCLKQIIKLKVAT----- 144
K +K M +PS +++GG W+S+ LD+EF+ VV C ++ L +
Sbjct: 130 KTRKMYMLYNLQPSAELTGGPWFSDAELDSEFVDLLLDVVYHYC-EENTNLALGANAPPV 188
Query: 145 -LEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKN 203
+ I I +V+L + I + +V D+++ K+ YK
Sbjct: 189 HVTDIKQFIVDQEVSRVELDEGHIRILCEVLVYDDRLERCKAG--------------YKA 234
Query: 204 VSKGGGGGE--PKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLD 251
G E PK + SV CG CP N C+ G + + C Y+ +WLD
Sbjct: 235 TLNGDLPDEELPKDAYTESV-CGQCPVFNVCSAGGPVDVE-CSYFDEWLD 282
>gi|332027979|gb|EGI68030.1| DNA-directed RNA polymerase III subunit RPC6 [Acromyrmex
echinatior]
Length = 306
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 105/235 (44%), Gaps = 38/235 (16%)
Query: 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKG 95
+ E+++Y +I + GIW RD+K K NL + + K +KSL+ +K V +
Sbjct: 91 NEEKIVYKIIEE-AGNQGIWIRDIKT--KSNLMNKPLEKILKSLETSKYVKVVKPVEASK 147
Query: 96 KKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIK---------------- 139
KK M EP++ ++GGAWY + +TEF+ V+ QC + + +
Sbjct: 148 KKVYMLYNLEPAESVTGGAWYQDQDFETEFVDVLNQQCYRFLEQKREKTKNCNTGPIAAR 207
Query: 140 -LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGK 198
+ A+ + + I G KV LT IE I+ ++ D +I + +N G
Sbjct: 208 NMTYASSKDVLKYISDLGVSKVKLTVTDIEVILNTLICDGKIEQTLTND---------GN 258
Query: 199 VCYKNVSKGGGGGEPKTGSSASV--PCGVCPQINFCTPDGVISPKTCVYYTKWLD 251
Y+ + +P V PCG+CP C +G ++P C Y WL+
Sbjct: 259 HLYRAI-------QPLLNPMGLVKTPCGLCPVRKQCHNEGPVTPIKCHYIKDWLE 306
>gi|56756084|gb|AAW26220.1| SJCHGC02354 protein [Schistosoma japonicum]
Length = 305
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 123/238 (51%), Gaps = 28/238 (11%)
Query: 33 SLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEV-VN 90
SL+D ERL+Y+ IR N + + + E K LP N + + +KSL +K +IKEV +
Sbjct: 78 SLSDLEERLVYNAIR-NAGEEAASLKLISSETK--LPQNRIPRILKSLISKKMIKEVPMA 134
Query: 91 IHNKGKKHLMAVEFEPSKDISGGAWYS-EGSLDTEFIKVVKSQCLKQIIKLKVATLEGIS 149
I +K K +L+ +E EPS+ ++ ++ E +D EFI ++++ CLK ++ K + I+
Sbjct: 135 IGHKQKVYLL-MELEPSEKLAANTLFAGESGVDAEFISILRAACLK-YLQDKANSASHIA 192
Query: 150 DSIKRSGAFKVD-------LTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYK 202
D ++R A V +T +I + V +++V G GE ++C +
Sbjct: 193 DPLERRQASYVSCEEIHRFITNTKICTVAMTVQDVQCVLDVLKFG-GELET----RICSE 247
Query: 203 NVSKGGGGG--------EPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
+ +G G P + AS+PC VC C PDG I+P++C + ++L+F
Sbjct: 248 TLDQGTSFGMLYRLATQTPCVANLASIPCTVCLCRKDCRPDGPINPQSCKLFQEFLEF 305
>gi|350410921|ref|XP_003489178.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Bombus impatiens]
Length = 311
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 115/264 (43%), Gaps = 41/264 (15%)
Query: 7 DLYLLGLAKGSGMSKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVN 66
DL+ G GS + + K P + + E+++Y +I + GIW RD++ K N
Sbjct: 70 DLFKQG---GSLLYRLKDPSKAKIAKGADNEEKIVYTIIEE-AGNKGIWIRDIR--FKSN 123
Query: 67 LPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
L + K +KSL+ K IK V ++ KK M EP ++GGAWY + + EF+
Sbjct: 124 LMPTQLNKILKSLEIKKFIKAVKSVAASKKKVYMLYNLEPDTSVTGGAWYQDQDFEAEFV 183
Query: 127 KVVKSQCLKQI-----------------IKLKVATLEGISDSIKRSGAFKVDLTKQQIEE 169
V+ QC + + + A+ + + I G KV L+ + +E
Sbjct: 184 DVLNQQCYRFLENKREQMNSCRGGPIMARNVTFASSKEVWKFISDLGISKVKLSVEDLEM 243
Query: 170 IVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASV--PCGVCP 227
I+ +V D + V+ SG+ G Y+ V EP + CG+CP
Sbjct: 244 ILNTLVYDGK---VERTLSGD------GSTLYRAV-------EPLLSPPGLIKSTCGICP 287
Query: 228 QINFCTPDGVISPKTCVYYTKWLD 251
C G ++P C Y T+WL+
Sbjct: 288 VRKNCCDVGDVTPTKCQYITEWLE 311
>gi|340714612|ref|XP_003395820.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Bombus terrestris]
Length = 311
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 115/264 (43%), Gaps = 41/264 (15%)
Query: 7 DLYLLGLAKGSGMSKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVN 66
DL+ G GS + + K P + + E+++Y +I + GIW RD++ K N
Sbjct: 70 DLFKQG---GSLLYRLKDPSKAKIAKGADNEEKIVYTIIEE-AGNKGIWIRDIR--FKSN 123
Query: 67 LPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
L + K +KSL+ K IK V ++ KK M EP ++GGAWY + + EF+
Sbjct: 124 LMPTQLNKILKSLEIKKFIKAVKSVAASKKKVYMLYNLEPDTSVTGGAWYQDQDFEAEFV 183
Query: 127 KVVKSQCLKQI-----------------IKLKVATLEGISDSIKRSGAFKVDLTKQQIEE 169
V+ QC + + + A+ + + I G KV L+ + +E
Sbjct: 184 DVLNQQCYRFLENKREQMNSCRGGPIMARNVTFASSKEVWKFISDLGISKVKLSVEDLEM 243
Query: 170 IVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASV--PCGVCP 227
I+ +V D + V+ SG+ G Y+ V EP + CG+CP
Sbjct: 244 ILNTLVYDGK---VERTLSGD------GNTLYRAV-------EPLLSPPGLIKSTCGICP 287
Query: 228 QINFCTPDGVISPKTCVYYTKWLD 251
C G ++P C Y T+WL+
Sbjct: 288 VRKNCCDVGDVTPTKCQYITEWLE 311
>gi|344239296|gb|EGV95399.1| Protein transport protein Sec23B [Cricetulus griseus]
Length = 630
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 99/195 (50%), Gaps = 28/195 (14%)
Query: 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKG 95
+ E+L+Y +I + + GIW+RD++ K NLP + K +K+L++K LIK V ++
Sbjct: 28 NQEKLVYQII-EDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASK 84
Query: 96 KKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRS 155
KK M +P + ++GGAWYS+ ++EF++V+ QC K +
Sbjct: 85 KKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFL------------------ 126
Query: 156 GAFKVDLTKQQIEEIVRAVVLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPK 214
KV+L+ + IE I+ ++ D ++ M + + G ++ Y+ V+ P
Sbjct: 127 -QTKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNP----ILPP 181
Query: 215 TGSSASVPCGVCPQI 229
TG PCG+CP +
Sbjct: 182 TG-LVRAPCGLCPDM 195
>gi|261196936|ref|XP_002624871.1| DNA-directed RNA polymerase III subunit Rpc34 [Ajellomyces
dermatitidis SLH14081]
gi|239596116|gb|EEQ78697.1| DNA-directed RNA polymerase III subunit Rpc34 [Ajellomyces
dermatitidis SLH14081]
Length = 363
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 114/273 (41%), Gaps = 65/273 (23%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+L ERLIY V+ S + G+WTR +K + NL IV + +KSL+ K+ IK V N+
Sbjct: 95 NLNAEERLIYSVVESTGRS-GVWTRTIKS--RTNLHQTIVNRCLKSLETKNYIKSVRNVK 151
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVV----------------------- 129
+K M +PS++++GGAW+++G LD +FI+ +
Sbjct: 152 YPQRKMYMLSGLQPSEEVTGGAWFTDGVLDADFIRGLGGWIEHWVSARSWYDRAAAERKA 211
Query: 130 -------------KSQCLKQIIKLK-VATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVV 175
+ Q L + T+ I+++I SG V + + I +++ +
Sbjct: 212 AKRQKIRPDNAKEEPQYLPYLPSYNGYPTVTDITNAINNSGLTPVTMGESSIAQLLEMLC 271
Query: 176 LDNQIMEVKSNGSGEFTNIP------------------VGKVCYKNVSKGGGGGEPKTGS 217
D +++ ++ + + P K +++ GG G
Sbjct: 272 FDGRLISLRDGAAYKSVKKPNQISLQRDLGLQTSDQTDQDKTDQDSLTLGGNG------- 324
Query: 218 SASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
PCG CP C G ++ + C Y+ +W+
Sbjct: 325 MTEAPCGRCPVFALCQEGGPVNAENCEYFDEWI 357
>gi|340518110|gb|EGR48352.1| predicted protein [Trichoderma reesei QM6a]
Length = 352
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 110/255 (43%), Gaps = 46/255 (18%)
Query: 35 TDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNK 94
TD + ++Y +I + D GIWT+ +++ L N+ D+++ +IK LQ K LI N+ +
Sbjct: 99 TDEQVMVYSLIDDSGGD-GIWTQTLQKRL--NMHDSVLKNAIKQLQAKGLIAPFKNVEHP 155
Query: 95 GKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIK--------VVKSQCLKQ---------- 136
KK + PS +GG WY++ LD FI+ +K Q
Sbjct: 156 NKKMYIKASIRPSDRATGGPWYTDQDLDEAFIEDLQRVVFDFIKRQSTYHSTHGGASRAA 215
Query: 137 -----IIKLKVA-----TLEGISDSIKRSG-AFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185
++ L T+ I+ + SG L++ ++++V +V DN + VK
Sbjct: 216 SSKPALLPLPAGYTAYPTVRDIARLLSSSGITNNTILSEGDVKKLVDVLVWDNLVEPVKV 275
Query: 186 NGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSA----------SVPCGVCPQINFCTPD 235
G + V ++ ++V G +P TG + PCG CP C
Sbjct: 276 AGRVGYR---VSRIARQSVESWAGRDDP-TGRAGGPELYVSPLTEAPCGRCPVFELCEEG 331
Query: 236 GVISPKTCVYYTKWL 250
G + P C Y+ KWL
Sbjct: 332 GPVGPSNCEYFQKWL 346
>gi|19075898|ref|NP_588398.1| DNA-directed RNA polymerase III complex subunit Rpc34 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|9297041|sp|O94553.1|RPC6_SCHPO RecName: Full=Probable DNA-directed RNA polymerase III subunit
rpc6; Short=RNA polymerase III subunit C6; AltName:
Full=DNA-directed RNA polymerase III 34 kDa polypeptide;
AltName: Full=RNA polymerase III subunit C34
gi|4176538|emb|CAA22872.1| DNA-directed RNA polymerase III complex subunit Rpc34 (predicted)
[Schizosaccharomyces pombe]
gi|76782161|gb|ABA54851.1| RNA polymerase III subunit Rpc34 [Schizosaccharomyces pombe]
Length = 301
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 121/260 (46%), Gaps = 40/260 (15%)
Query: 13 LAKGSGMSKRK-RPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ + R R D ++ E+++Y I+ N + GIW + + L+ NL ++
Sbjct: 61 LRQGNVLVYRAVRLDEAKTVSTMEGDEQIVYSFIK-NSGNEGIWRKTLT--LRTNLHVSV 117
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
V + +KSL++K+L+K + ++ N +K M + PS +++GG W+++ LD EFI+ +K
Sbjct: 118 VDRCLKSLESKNLVKSIKSVKNPTRKIYMLYDLVPSTELTGGPWFTDQELDVEFIENLKK 177
Query: 132 QCLKQIIKLKVA--------------------TLEGISDSIKRSGAFKVDLTKQQIEEIV 171
+ + T I + ++ + KVDL+ + +V
Sbjct: 178 VIYRYVHSKSFPPKKAAMGPDLVWGPEYNGYPTALQIHNWLRSTNITKVDLSLANVISLV 237
Query: 172 RAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINF 231
++ D ++ E +S+G+ Y+ + + T S PCG CP +
Sbjct: 238 DVLIYDGKV-EKRSDGAS-----------YRAIRVNNENIDAFTES----PCGNCPVSDI 281
Query: 232 CTPDGVISPKTCVYYTKWLD 251
C + ++P TC Y KWL+
Sbjct: 282 CDANSRVNPITCEYLDKWLN 301
>gi|256086074|ref|XP_002579231.1| rna polymerase III (DNA directed) 39kD subunit-related [Schistosoma
mansoni]
gi|353228962|emb|CCD75133.1| rna polymerase III (DNA directed), 39kD subunit-related
[Schistosoma mansoni]
Length = 305
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 125/246 (50%), Gaps = 30/246 (12%)
Query: 26 DSNAPSDSLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSL 84
DS SL+D ERL+Y+ IR+ +D + + E K LP N + + +KSL +K +
Sbjct: 71 DSTEKLKSLSDLEERLVYNAIRNAGEDAASL-KLISSETK--LPQNRIPRILKSLISKKM 127
Query: 85 IKEV-VNIHNKGKKHLMAVEFEPSKDISGGAWYS-EGSLDTEFIKVVKSQCLKQIIKLKV 142
IKEV + + +K K +L+ +E EPS+ ++ ++ + +D EFI ++++ CLK ++ K
Sbjct: 128 IKEVPMAVGHKQKVYLL-MELEPSEKLAANTLFAGDSGVDAEFISILRTACLK-YLQDKA 185
Query: 143 ATLEGISDSIKRSGAFKVDLTKQQIEEIVRAV-----------VLDNQ-IMEVKSNGSGE 190
+ I+D ++R A V EEI R + V D Q ++EV G GE
Sbjct: 186 ISASHIADPLERRQASYVS-----CEEIHRFITNTKICTVSMTVQDVQCVLEVLKFG-GE 239
Query: 191 FTNIPVGKVCYKNVSKG----GGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYY 246
+ ++ S G P + A++PC +C C PDG I+P++C +
Sbjct: 240 LETRITSETSEQSTSFGILYRLATQTPSVANLANIPCTICLCRKDCRPDGPINPQSCKLF 299
Query: 247 TKWLDF 252
++L+F
Sbjct: 300 QEFLEF 305
>gi|123487163|ref|XP_001324886.1| RNA polymerase Rpc34 subunit family protein [Trichomonas vaginalis
G3]
gi|121907776|gb|EAY12663.1| RNA polymerase Rpc34 subunit family protein [Trichomonas vaginalis
G3]
Length = 285
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 105/217 (48%), Gaps = 22/217 (10%)
Query: 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKG 95
DH R IYD+I + GIW RD+++ D ++ +K L+ + LIK + +IH K
Sbjct: 90 DHHR-IYDLI-DKAGNKGIWRRDIRK--AGGCADKTLSNVLKELETRCLIKSITSIHEKK 145
Query: 96 KKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRS 155
K + + PS++I+GG WY +G+ +T F++ + + + + T++ + + IK +
Sbjct: 146 LKLYLLYDMPPSEEITGGVWYLDGTFNTTFVEQLIANSVNIVQVSGGITVKDMIEKIKLN 205
Query: 156 GAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKT 215
+T ++ E+++ A+V ++ +K++G+ I C
Sbjct: 206 TLAAAHITDKEAEQVITAMVHSKRV--IKTSGAMLRPGILEVPPC--------------- 248
Query: 216 GSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
+ VPC CP C P G I+P++C Y K +
Sbjct: 249 -PISEVPCCGCPVFTQCYPGGPINPRSCPYLQKLREL 284
>gi|449015431|dbj|BAM78833.1| RNA polymerase III subunit C34 [Cyanidioschyzon merolae strain 10D]
Length = 371
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 83/145 (57%), Gaps = 4/145 (2%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
LT+ ER +Y+ IR+ + GIW R ++ L + L D V +++K LQ + L+K+V +I N
Sbjct: 111 LTNTERAVYEQIRAAGEH-GIWVRHIRGRLGLPLAD--VNRTLKELQRRELVKQVQSIRN 167
Query: 94 KGKKHLMAVEFEPSKDISGGAWY-SEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSI 152
K +K M E EPS++++GG +Y EG+ D EFI ++ ++++ + ++ +
Sbjct: 168 KTRKLYMLAELEPSREVTGGPFYDEEGTFDHEFIHRLRELVWRRLLHTPWTSALELTQFL 227
Query: 153 KRSGAFKVDLTKQQIEEIVRAVVLD 177
+S + L +E++++ + D
Sbjct: 228 NQSNVLRFSLEVADLEQVLQTMCWD 252
>gi|170095840|ref|XP_001879140.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645508|gb|EDR09755.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 462
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 93/184 (50%), Gaps = 23/184 (12%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
LT E L+ I+ + GIWT+ +K K NL ++ + +K+L K LIK V ++ +
Sbjct: 79 LTGEENLVLSHIKIAATE-GIWTKHLK--AKTNLHQTVIDRCLKTLVQKRLIKRVPSVQH 135
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKL------------- 140
+K M EPS ++GG WY++ LDTEFI+ + C K I L
Sbjct: 136 PTRKIYMLEGLEPSIALTGGPWYTDNELDTEFIQNLTEACFKFISDLSFPKRKEGAPGAL 195
Query: 141 -------KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTN 193
+ T + I +S++++ + DLT + +E ++ +VLD +I ++ + GS + +
Sbjct: 196 YPISNAPQYPTAQHIRNSLRKAQLTETDLTVEHVEMLLNVLVLDGKIEKLPAFGSALWDS 255
Query: 194 IPVG 197
+G
Sbjct: 256 SAIG 259
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 219 ASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
+ PC +CP FC G ++P+ CVYY WL
Sbjct: 419 SETPCALCPSFEFCKDGGPVNPRECVYYGDWL 450
>gi|209882502|ref|XP_002142687.1| DNA-directed RNA polymerase III subunit RPC6 [Cryptosporidium muris
RN66]
gi|209558293|gb|EEA08338.1| DNA-directed RNA polymerase III subunit RPC6, putative
[Cryptosporidium muris RN66]
Length = 312
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 113/231 (48%), Gaps = 25/231 (10%)
Query: 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNK-SLIKEVVN 90
+ LT E +Y I N + GIWT D+++ L +IV +++K L N+ +LIK + +
Sbjct: 85 NKLTPDEYQVYCCIE-NAGNQGIWTADIRK--VTGLQTHIVQRAVKLLCNELNLIKPIKS 141
Query: 91 IHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISD 150
IH K +K + EPSK+I+GG +Y G D F+ ++ + + ++ + AT+ I D
Sbjct: 142 IHVKNRKVYILASLEPSKEIAGGTFYDNGEFDMTFVDYIQDKIIAILMSKRRATINEILD 201
Query: 151 SIKRSGAFKVDLTKQQI-----EEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVS 205
I + +++ I E ++ ++++++I+ K N +GE+ + + + +
Sbjct: 202 FINSESSVDTCSSRRSISLSDLESVLNMLIIESKILCFKINNTGEWLYMCIY---WPSCL 258
Query: 206 KGGGGGEPKTGSSASVPCGVCPQINFC-----TPDGVISPKTCVYYTKWLD 251
G E VPC CP N C TP + P+ C+Y LD
Sbjct: 259 STNIGVE-------DVPCLSCPVFNTCSGLFNTP-ILPCPQECIYLNFLLD 301
>gi|189208642|ref|XP_001940654.1| DNA-directed rna polymerase III subunit [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187976747|gb|EDU43373.1| DNA-directed rna polymerase III subunit [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 362
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 71/295 (24%), Positives = 126/295 (42%), Gaps = 53/295 (17%)
Query: 5 FTDLYLLGLAKGSG---MSKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKR 61
D +LL L G R R D++ LT ERL+Y I + D GIW++ ++
Sbjct: 67 LCDRHLLKLMTFEGDPCWKLRTREDADKLR-RLTPDERLLYHHIDQVQAD-GIWSKALRN 124
Query: 62 ELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSL 121
K N+ +TK +KSL++K L++ V+++ +K + +PS+DI+GG W ++G
Sbjct: 125 --KTNVTQQTLTKCLKSLESKDLVQSVMSVKYPNRKMYLLKHLKPSEDIAGGPWQTDGEF 182
Query: 122 DTEFIKVV---------KSQCLK------------QIIKLKVATLEGISD---------- 150
DT I+ + C+K I + K + L+ + D
Sbjct: 183 DTALIETISGAVAQYVEHETCIKVPGNWNDYDRSVAIAQKKASALDAVRDIEEAPAVRSY 242
Query: 151 -SIKRSGAFKVDLTKQQIEEIVRAVVLD----NQIMEVKSNGSGEFTNIPVGKVCYKNVS 205
+ AF++ + + + A V + ++++ K+ + + V +
Sbjct: 243 KPPRDPNAFRI-VHRHKPHYPTAASVAEWLNGKELIKAKTVREEDMEQLLEMMVAEDRLE 301
Query: 206 KGGGGGEPKTGSSAS---------VPCGVCPQINFCTPDGVISPKTCVYYTKWLD 251
K G + + PCG CP + C +G IS +TCVY+ +WLD
Sbjct: 302 KTSGTNYRTVLKATNTKVYNGFVDAPCGNCPVFDQCGDEGEISARTCVYFGQWLD 356
>gi|393221910|gb|EJD07394.1| hypothetical protein FOMMEDRAFT_164375 [Fomitiporia mediterranea
MF3/22]
Length = 417
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 23/205 (11%)
Query: 4 SFTDLYLLGLAKGSGMSKRK--RPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKR 61
S T L + G G+S R + + A D L E L+ + I++ + GIWT+ +K
Sbjct: 50 SQTGLIRIQRGAGGGISYRAVGKNEIEAKKD-LAGEELLVLNHIQAASNE-GIWTKHLK- 106
Query: 62 ELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSL 121
K L ++ + +KSL +K LIK + NI +K M EPS I+GG WY++ L
Sbjct: 107 -TKTELHQTVIDRCLKSLVHKQLIKSITNIKYPTRKTYMLYHLEPSSSITGGPWYTDSEL 165
Query: 122 DTEFIKVVKSQCLKQIIKLKV-----------------ATLEGISDSIKRSGAFKVDLTK 164
DTEFIK++ CLK I + T + I ++++ + +LT+
Sbjct: 166 DTEFIKLLMDACLKFIREKSFPRGKGDALFPISSAPAYPTTKQIRTFLQKTRITETELTE 225
Query: 165 QQIEEIVRAVVLDNQIMEVKSNGSG 189
+ IE ++ ++ D QI + + G+
Sbjct: 226 EHIEMLLNVLITDGQIERLPAFGAA 250
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 177 DNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDG 236
D++ + K N +GE + + VG V + G S + PCG CPQI+FC G
Sbjct: 338 DDKEADAKHNAAGEVS-LDVGDFGGTYVYRAIRQERVVLGWSEA-PCGRCPQIDFCKDGG 395
Query: 237 VISPKTCVYYTKWL 250
++P+ C Y+ WL
Sbjct: 396 PVNPRECQYFGDWL 409
>gi|397640426|gb|EJK74113.1| hypothetical protein THAOC_04229 [Thalassiosira oceanica]
Length = 301
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 91/160 (56%), Gaps = 6/160 (3%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
L +++Y V+ ++ + GIWT D++ + +P + + K K+L+N+ LIK + ++
Sbjct: 125 LDGQAKMVYQVVEASG-NKGIWTVDVRSQ--TGIPQSNLAKIFKALENRRLIKPIKSVTA 181
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS---QCLKQIIKLKVATLEGISD 150
K KK M + PSKDI+GG WY+E D EFI +++ C++++ + TL+ I++
Sbjct: 182 KTKKLYMLFDLTPSKDITGGPWYTEYEFDHEFIAELRNFILMCVRRMNRGDGVTLKQIAN 241
Query: 151 SIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGE 190
+ ++ +V L+ +++++++ + D + + GE
Sbjct: 242 KMIQANVSRVQLSLDEVQQVLQTLAFDYLVEQRSVTADGE 281
>gi|343428974|emb|CBQ72519.1| related to RPC34-DNA-directed RNA polymerase III, 34 KD subunit
[Sporisorium reilianum SRZ2]
Length = 369
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 105/251 (41%), Gaps = 53/251 (21%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
L ++E L+Y I+ + + GIWT+ +K + L I+ + +KSL+ K L+K V ++
Sbjct: 92 LDENETLVYSHIKDARNE-GIWTKQLKA--RTGLHQTIINRCLKSLEQKQLVKAVKSVKY 148
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLK------------ 141
+K M PS ++SGG WY++ LDT FI + S + ++ K
Sbjct: 149 PTRKIYMLFGLTPSIELSGGPWYTDNELDTGFINEL-SMAILNFVRSKSFPKNGQSRALF 207
Query: 142 -------VATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNI 194
+ + I ++ SG + +L + + ++ +V D QI I
Sbjct: 208 PTSHTSQLPSANSIHSYLQSSGLTETELEVEHVVSLLDILVYDEQI-----------EKI 256
Query: 195 PVGKVCYKNV-------------------SKGGGGGEPKTGSSASVPCGVCPQINFCTPD 235
PV + + S G G + + PCG CP +FC
Sbjct: 257 PVLPFSFGGMGGGMNGFDEDDQDYSDSGRSTDGSGSDSDSVGWTETPCGHCPVFDFCDDT 316
Query: 236 GVISPKTCVYY 246
G ++ +TC YY
Sbjct: 317 GPVNAETCQYY 327
>gi|193613196|ref|XP_001944559.1| PREDICTED: probable DNA-directed RNA polymerase III subunit
RPC6-like [Acyrthosiphon pisum]
Length = 318
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 117/248 (47%), Gaps = 37/248 (14%)
Query: 21 KRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQ 80
K K P ++ P D+ T+ E +++++IR + + GIW RD++ + + LP + K +KSL+
Sbjct: 86 KYKGPTASTPGDANTE-ELVVFNLIRDSGRK-GIWIRDVRIKSNLGLPR--LKKILKSLE 141
Query: 81 NKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVV----------- 129
K IK V ++ K M + EP I+GGAWYS ++EFI+++
Sbjct: 142 TKKAIKAVKSVAAARKIVYMLFDLEPDSSITGGAWYSNQEFESEFIEILTKHSYKFLEAK 201
Query: 130 KSQCLKQ------IIKLKV--ATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIM 181
KS+ LK ++K AT + + + I ++G KV LT + I I+ +V D +
Sbjct: 202 KSKALKNTTIRSPLVKYNTSYATADRVLEFISKTGISKVRLTVEDIISILDLLVYDG-LA 260
Query: 182 EVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPK 241
+ N G+ + +N + + +PCG CP I C+ ++
Sbjct: 261 AKRVNSEGKLEYRSTKTLLSRN-------------AVSFLPCGSCPVIKRCSDANQLNCL 307
Query: 242 TCVYYTKW 249
C + W
Sbjct: 308 NCKHMKIW 315
>gi|391335259|ref|XP_003742013.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Metaseiulus occidentalis]
Length = 355
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 110/233 (47%), Gaps = 32/233 (13%)
Query: 38 ERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKK 97
ER+++ VI + GIW RD++ + L ++K +KSL+ K LIK V ++ KK
Sbjct: 108 ERVVFQVIE-RAGNKGIWIRDIRIFSGLVLAQ--LSKVLKSLEVKKLIKSVKSVSAAKKK 164
Query: 98 HLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQII-KLK--------------- 141
M E EP + I+GGAWYS ++EF+ +++ QCL+ ++ K K
Sbjct: 165 VYMLYELEPDRSITGGAWYSGQDFESEFVDILQQQCLRFLVHKAKTASEKFQDDFINMRN 224
Query: 142 --VATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIME-VKSNGSGEFTNIPVGK 198
VA+ E + + IK+ G KV L IE I+ + +++ + S G+ +
Sbjct: 225 NAVASTEDVWNFIKQLGISKVQLDVGDIEVILNTLHYQGKVVRSISSEKIGDSND----- 279
Query: 199 VCYKNVSKGGGGGEPKTGSS-ASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
++S T + ++PCG C + C+ GV P +C Y L
Sbjct: 280 ----HLSLWASLDHSTTSMAICNIPCGKCMVRHDCSVSGVRRPSSCAYVKDLL 328
>gi|449546101|gb|EMD37071.1| hypothetical protein CERSUDRAFT_155527 [Ceriporiopsis subvermispora
B]
Length = 481
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 28/180 (15%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
LTD E L+ I+S + GIWT+ +K K L ++ +S+KSL K LIK V ++
Sbjct: 78 LTDEESLVLSYIQSAGNE-GIWTKHLKA--KTELHQTVIDRSLKSLTQKQLIKAVKSVKF 134
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIK 153
+K M EPS +++GG WY++ LDTEFIK++ S CL+ I + D+
Sbjct: 135 PTRKIYMLSHLEPSVEMTGGPWYTDNELDTEFIKLLCSACLRFIRDRSTPKTKASEDAPA 194
Query: 154 RSGAF-------------------------KVDLTKQQIEEIVRAVVLDNQIMEVKSNGS 188
R+ + L + +E ++ +VLD ++ +V + G+
Sbjct: 195 RTQPLFSISAAPSYPTAQQILTFLGKSRITETQLAIEHVESLLNVLVLDGEVEKVPAFGA 254
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 219 ASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
A PC CP FC G ++P+ CVYY +WL
Sbjct: 442 AQAPCTRCPTFEFCKVGGPVNPQECVYYGEWL 473
>gi|398408736|ref|XP_003855833.1| hypothetical protein MYCGRDRAFT_64857 [Zymoseptoria tritici IPO323]
gi|339475718|gb|EGP90809.1| hypothetical protein MYCGRDRAFT_64857 [Zymoseptoria tritici IPO323]
Length = 349
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 107/256 (41%), Gaps = 41/256 (16%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+L E+ IY++I GIWTRD+K+ K ++ N+V K++ ++ +LIK V ++
Sbjct: 95 NLDRDEKTIYEIIE-EAHTTGIWTRDLKK--KTSIAQNVVQKALSKMEKGNLIKSVKSVK 151
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEF--------------------------- 125
++ M PS+D++G +++ G LD F
Sbjct: 152 APAQRTYMLSHLSPSEDVTGNSFFDAGDLDESFRDELLNLIVFWVRTDIEDIASSTRPKY 211
Query: 126 ------IKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFK----VDLTKQQIEEIVRAVV 175
++ +Q L + T E I + S A K LT +I+ + ++
Sbjct: 212 RSLRPDLETDHTQLLYRAGTHSYPTAEEIHQFLTTSSAIKPTKAASLTVAEIQGCIDVLI 271
Query: 176 LDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSAS-VPCGVCPQINFCTP 234
D+++ ++ + + V V +K E G+ + PCG CP + C
Sbjct: 272 WDDKLEPIRRHDGAGWGYRTVRGVSFKPPGSVFEEFEEAVGTGLTQAPCGHCPVFDLCHD 331
Query: 235 DGVISPKTCVYYTKWL 250
G I+ CVY+ +WL
Sbjct: 332 SGPINAAECVYFEQWL 347
>gi|430813513|emb|CCJ29148.1| unnamed protein product [Pneumocystis jirovecii]
Length = 322
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 99/215 (46%), Gaps = 32/215 (14%)
Query: 52 MGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDIS 111
+GIW+R +K +K NL ++ +++KSL++K LIK V ++ N +K M + PS +++
Sbjct: 122 LGIWSRTIK--IKTNLHTTVLNRALKSLESKQLIKAVKSVKNPTRKIFMIYDLVPSIELT 179
Query: 112 GGAWYSEGSLDTEFIKVVKSQCLKQIIKLK---------------VATLEGISDSIKRSG 156
GG W+++ +D EFI+ ++ K I+ T E I +K SG
Sbjct: 180 GGPWFTDQEMDLEFIERLQGALYKYILSHSYPKSQDTLFSPSYSGYLTAEQIHSWLKNSG 239
Query: 157 AFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTG 216
+VDL + ++ +V D +I E NG+ F + +V +KN+
Sbjct: 240 ITQVDLELSDVVNLLNVLVYDRKI-EYCQNGTA-FK--ALRRVNHKNIH----------- 284
Query: 217 SSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLD 251
C C N + S C+Y+ WLD
Sbjct: 285 DFTETACESCLINNLFFKEKNTSNNFCIYFRSWLD 319
>gi|427797839|gb|JAA64371.1| Putative dna-directed rna polymerase iii subunit rpc6, partial
[Rhipicephalus pulchellus]
Length = 329
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 97/201 (48%), Gaps = 23/201 (11%)
Query: 53 GIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISG 112
GIW RD++ +K L + K +K+L++K LIK V ++ KK M EP + ++G
Sbjct: 130 GIWIRDIR--IKSGLVLTALNKILKNLESKKLIKAVKSVSASKKKVYMLFNLEPDRSVTG 187
Query: 113 GAWYSEGSLDTEFIKVVKSQCLKQIIK------------------LKVATLEGISDSIKR 154
GAWYSE ++EF++V+ QC + +IK A+ + + + IK+
Sbjct: 188 GAWYSEQEFESEFVEVLNQQCHRFLIKKLTVAKDTSAGDPLLEKNASFASSKEVWEFIKK 247
Query: 155 SGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNG-SGEFTNIPVGKVCYKNVSKGGGGGEP 213
G KV L+ + IE I+ ++ D ++ + G ++ +++ EP
Sbjct: 248 LGISKVQLSVEDIEMILSTLIYDGKVEKTVVCGSGSSLSSSSRSASSSEDLVNLYRAVEP 307
Query: 214 KTGSSA--SVPCGVCPQINFC 232
S+ +PCG CP IN C
Sbjct: 308 LIDSTGLMRIPCGTCPVINNC 328
>gi|156087256|ref|XP_001611035.1| RNA polymerase rpc34 subunit containing protein [Babesia bovis
T2Bo]
gi|154798288|gb|EDO07467.1| RNA polymerase rpc34 subunit containing protein [Babesia bovis]
Length = 293
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 111/240 (46%), Gaps = 18/240 (7%)
Query: 14 AKGSGMSKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVT 73
A+G K + S L D E ++ I + D GIWT D+K+ ++ N +T
Sbjct: 68 AEGRKYVKLRDSVSRQQVSRLHDLEYAVFCAIET-AGDRGIWTADIKKICEI--TGNQLT 124
Query: 74 KSIKSL-QNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQ 132
+S+K L + L+K+V N+H K +K M +P+++++GG++Y G + ++ ++ Q
Sbjct: 125 RSLKVLLEQHGLVKQVTNVHQKSRKLYMLFNVKPARELTGGSFYFNGEFNEMLVEHIQEQ 184
Query: 133 CLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFT 192
+ K + ++L I++ +K S ++ ++ + I++ ++L+ ++ + SG+
Sbjct: 185 VGAYLAKYQGSSLSQITNFLKTSDKISGEVLEEDVLSIIQILILEEKVYSAPT-ASGDSI 243
Query: 193 NIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCT--PDGVISPKTCVYYTKWL 250
I G SK G PC C C + + P C Y +WL
Sbjct: 244 YIWAGSANVNFASKAFGA-----------PCFKCDVAMSCHLGKENELCPSKCTYLNQWL 292
>gi|308497993|ref|XP_003111183.1| hypothetical protein CRE_03668 [Caenorhabditis remanei]
gi|308240731|gb|EFO84683.1| hypothetical protein CRE_03668 [Caenorhabditis remanei]
Length = 296
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 105/236 (44%), Gaps = 44/236 (18%)
Query: 35 TDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNK 94
T+ E++IY +I +K GIW ++++ +N + K++KSL+ K LIK + +
Sbjct: 82 TEEEQVIYGLIEESK-TRGIWIKELRDGSGLNQLQ--LRKTLKSLETKKLIKTIKAVGTT 138
Query: 95 GKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEG------- 147
KK + + EP ++GG +YS+ LD+E I + S C + +E
Sbjct: 139 -KKCYIVFDLEPDMSLTGGTFYSDQQLDSELINTLISVCGSYASSRRKHAIESNPNNIQM 197
Query: 148 -----------ISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPV 196
I+ I V L+ + +E I+ VLD I E +++G
Sbjct: 198 QRESSYIRPQEIAQFITEKRVLNVPLSLEDLERILEVAVLDGTI-ERRADGKI------- 249
Query: 197 GKVCYKNVSKGGGGGEPKTGSS--ASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
+ C P++ S SVPC VCP + C P VISP++C Y WL
Sbjct: 250 -RACA-----------PRSSISPLVSVPCAVCPVVEDCRPGYVISPQSCDYMKNWL 293
>gi|268564211|ref|XP_002639044.1| Hypothetical protein CBG22296 [Caenorhabditis briggsae]
Length = 296
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 106/236 (44%), Gaps = 44/236 (18%)
Query: 35 TDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNK 94
T+ E+ IY +I +K + GIW ++++ +N + K++KSL+ K LIK + + +
Sbjct: 82 TEEEQAIYTLIEESK-NRGIWIKELREGTGLNQLQ--LRKTLKSLETKKLIKTIKAVGST 138
Query: 95 GKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEG------- 147
K +++ + EP ++GG +YS+ LD+E I + S + LE
Sbjct: 139 KKCYIL-FDLEPDMALTGGTFYSDQQLDSELINTLISVSGSYAASRRKLALEEYPNNIQM 197
Query: 148 -----------ISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPV 196
I+ I V LT + +E I+ VLD I E +++G
Sbjct: 198 QRETSYIRPQEIAQFITEKRLLNVPLTIEDLERILEVAVLDGTI-ERRADGKI------- 249
Query: 197 GKVCYKNVSKGGGGGEPKTGSS--ASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
+ C P++ S SVPC VCP + C P VISP++C Y WL
Sbjct: 250 -RACA-----------PRSSISPLVSVPCAVCPVVEDCRPGYVISPQSCDYMKNWL 293
>gi|17509641|ref|NP_491427.1| Protein W09C3.4 [Caenorhabditis elegans]
gi|20139429|sp|P91529.1|RPC6_CAEEL RecName: Full=Probable DNA-directed RNA polymerase III subunit
RPC6; Short=RNA polymerase III subunit C6; AltName:
Full=DNA-directed RNA polymerase III subunit F
gi|373218920|emb|CCD64234.1| Protein W09C3.4 [Caenorhabditis elegans]
Length = 296
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 44/236 (18%)
Query: 35 TDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNK 94
T+ E++IY +I +K GIW ++++ +N + K++KSL+ K LIK + +
Sbjct: 82 TEEEQVIYSLIEESK-TRGIWIKELREGSGLNQLQ--LRKTLKSLETKKLIKTIKAVGTT 138
Query: 95 GKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQC------------------LKQ 136
K +++ EP ++GG +YS+ LD+E I + S C ++
Sbjct: 139 RKCYIL-FSIEPDMSLTGGTFYSDQQLDSELINTLISVCGSYAASRRKHAIDENPNNIQM 197
Query: 137 IIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPV 196
+ + I+ I V L+ + +E I+ VLD I + G+ P
Sbjct: 198 QREASYIRPQEIAQFITEKRVLNVPLSLEDLERILEVAVLDGTI---ERRADGKIRACP- 253
Query: 197 GKVCYKNVSKGGGGGEPKTGSS--ASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
P++ S SVPC +CP + C P VISP++C Y WL
Sbjct: 254 ----------------PRSSISPLVSVPCAICPVVEDCRPGYVISPQSCDYMKNWL 293
>gi|403161593|ref|XP_003321906.2| hypothetical protein PGTG_03443 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375171846|gb|EFP77487.2| hypothetical protein PGTG_03443 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 525
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 66/103 (64%), Gaps = 3/103 (2%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
S++ E+L+YD I SN + GIWT+ +K ++ N+ +TK IK+L+NK+LIK V ++
Sbjct: 113 SMSTDEKLVYDNI-SNAGNTGIWTKTLK--MRTNIHQTNLTKCIKALENKNLIKAVKSVK 169
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLK 135
+K + E +PS + SGG WY++ LDTEFI V+ LK
Sbjct: 170 FPTRKIYILSELQPSVEHSGGPWYTDNELDTEFIGVLLQSILK 212
>gi|341883104|gb|EGT39039.1| hypothetical protein CAEBREN_20869 [Caenorhabditis brenneri]
Length = 296
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 106/236 (44%), Gaps = 44/236 (18%)
Query: 35 TDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNK 94
T+ E++IY +I +K GIW ++++ +N + K++KSL+ K LIK + +
Sbjct: 82 TEEEQVIYGLIEESK-TRGIWIKELRDGSGLNQLQ--LRKTLKSLETKKLIKTIKAVGTT 138
Query: 95 GKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEG------- 147
K +++ + EP ++GG +YS+ LD+E I + S C + +E
Sbjct: 139 KKCYIL-FDMEPDMSLTGGTFYSDQQLDSELINTLISICGSYAASRRKHAIEANPNNIQL 197
Query: 148 -----------ISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPV 196
I+ I V L+ + ++ I+ VLD I E +++G
Sbjct: 198 QREESYIRPQEIAQFITEKRILNVPLSVEDLDRILEVAVLDGSI-ERRADGKI------- 249
Query: 197 GKVCYKNVSKGGGGGEPKTGSS--ASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
+ C P++ S SVPC VCP + C P VISP++C Y WL
Sbjct: 250 -RACA-----------PRSSISPLVSVPCAVCPVVEDCRPGYVISPQSCDYMKNWL 293
>gi|326430685|gb|EGD76255.1| hypothetical protein PTSG_11665 [Salpingoeca sp. ATCC 50818]
Length = 320
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 99/236 (41%), Gaps = 36/236 (15%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSI-KSLQNKSLIKEVVNIH 92
L ER IY + + GIW K +PD K + + L +LIKE ++
Sbjct: 104 LEPDERAIYSAVEAAGT-AGIWNA----RFKSLIPDRKRLKRVLQQLTRDNLIKEFKPVN 158
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQI--------------- 137
N K H + + EP + +SGG +Y D EFI ++ L +
Sbjct: 159 NSKKPHYILYDLEPDESVSGGVFYDGDEFDREFINNLRMVILLFLKKRFKEAAKEENPYL 218
Query: 138 -IKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPV 196
K T + I+ + S K+ L+ E+++ +V D ++ N P+
Sbjct: 219 RFKHSYITPDEIASKLNASKVIKITLSPADCEKVLSTLVTDRLVI----------ANDPL 268
Query: 197 GKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
+ SK + + ++VPCG+CP + CT DGV++P C Y +WL F
Sbjct: 269 SSIKAYRFSKL----DRHPSALSAVPCGICPVRHNCTLDGVVNPVGCKYLDEWLAF 320
>gi|403367656|gb|EJY83651.1| DNA-directed RNA polymerase III, subunit C34 [Oxytricha trifallax]
Length = 289
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 121/247 (48%), Gaps = 20/247 (8%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTD---HERLIYDVIRSNKQDMGIWTRDMKRELKVN-LP 68
+G G + R S + L D + L+Y +I + D G +D+K +L
Sbjct: 52 FTQGKGQNLVYRYQSEEQAHKLRDLLPEDVLVYQMIEESG-DNGTQIQDLKIKLTPQGFN 110
Query: 69 DNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKV 128
I+TK +K ++ K LIK++ +++ ++ M +E EPS +++GG E + D + I++
Sbjct: 111 SVILTKILKKIEKKGLIKKIKSLNKNNRQVWMLMEIEPSINVTGGLIGQE-NFDLDSIEI 169
Query: 129 VKSQCLKQIIKLKVATLEGISDSIKRSGAFK--VDLTKQQIEEIVRAVVLDNQIMEVKSN 186
++ + L+ + K + +S IK+ G + + + I++I++ +V D +I ++++
Sbjct: 170 IQERLLEYLRKQGPTSYRELSLHIKQCGVIQKGSEFRDEDIKQIIQVLVYDQKIEQIQTG 229
Query: 187 -GS--GEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTC 243
GS G NI V K P+ +PC CP C P+ +++PK+C
Sbjct: 230 LGSMIGGADNI---------VYKLSNNKYPQQVYYTQIPCAHCPVRKECGPNNLVNPKSC 280
Query: 244 VYYTKWL 250
Y +WL
Sbjct: 281 QYINEWL 287
>gi|409080140|gb|EKM80501.1| hypothetical protein AGABI1DRAFT_58346 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 464
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 92/182 (50%), Gaps = 24/182 (13%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
L E L++ I++ + GIWT+ +K K NL I+ +S+K+L K L+K V ++ +
Sbjct: 79 LNGEENLVFSHIKAAGSE-GIWTKHLK--TKTNLHQTIIDRSLKTLTQKRLVKRVPSVQH 135
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKL------------- 140
+K M EPS ++GG WY++ LDTEFI+ + C K +
Sbjct: 136 PTRKIYMLEGLEPSISLTGGPWYTDNELDTEFIQHLTEVCYKFVRDTTFPKRKEGGGEGV 195
Query: 141 --------KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFT 192
+ T + I S+K++ + +L+ + +E ++ ++LD +I ++ + G+ +
Sbjct: 196 LYAISNPPRYPTAQDIRSSLKKAKLTETELSVEHVEMLLNVLILDGKIEKLPAFGTSMWD 255
Query: 193 NI 194
+I
Sbjct: 256 SI 257
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 219 ASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
+ PC +CP +FC G ++PK CVYY +WL
Sbjct: 421 SEAPCTLCPSFDFCKGGGPVNPKDCVYYGEWL 452
>gi|426198093|gb|EKV48019.1| hypothetical protein AGABI2DRAFT_202311 [Agaricus bisporus var.
bisporus H97]
Length = 464
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 92/182 (50%), Gaps = 24/182 (13%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
L E L++ I++ + GIWT+ +K K NL I+ +S+K+L K L+K V ++ +
Sbjct: 79 LNGEENLVFSHIKAAGSE-GIWTKHLK--TKTNLHQTIIDRSLKTLTQKRLVKRVPSVQH 135
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKL------------- 140
+K M EPS ++GG WY++ LDTEFI+ + C K +
Sbjct: 136 PTRKIYMLEGLEPSISLTGGPWYTDNELDTEFIQHLTEVCYKFVRDTTFPKRKEGGGEGV 195
Query: 141 --------KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFT 192
+ T + I S+K++ + +L+ + +E ++ ++LD +I ++ + G+ +
Sbjct: 196 LYAISNPPRYPTAQDIRSSLKKAKLTETELSVEHVEMLLNVLILDGKIEKLPAFGTSMWD 255
Query: 193 NI 194
+I
Sbjct: 256 SI 257
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 219 ASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
+ PC +CP +FC G ++PK CVYY +WL
Sbjct: 421 SEAPCTLCPSFDFCKGGGPVNPKDCVYYGEWL 452
>gi|148696516|gb|EDL28463.1| polymerase (RNA) III (DNA directed) polypeptide F, isoform CRA_c
[Mus musculus]
Length = 238
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 72/124 (58%), Gaps = 4/124 (3%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 66 LRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQII-EDAGNKGIWSRDIR--YKSNLPLTE 122
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 123 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 182
Query: 132 QCLK 135
QC K
Sbjct: 183 QCFK 186
>gi|148696517|gb|EDL28464.1| polymerase (RNA) III (DNA directed) polypeptide F, isoform CRA_d
[Mus musculus]
Length = 287
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 83/148 (56%), Gaps = 5/148 (3%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 101 LRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 157
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 158 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 217
Query: 132 QCLKQI-IKLKVATLEGISDSIKRSGAF 158
QC K + K + A + I+R+ +F
Sbjct: 218 QCFKFLQSKAETARESKQNPVIQRNSSF 245
>gi|149041226|gb|EDL95159.1| polymerase (RNA) III (DNA directed) polypeptide F (predicted),
isoform CRA_b [Rattus norvegicus]
Length = 293
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 74/124 (59%), Gaps = 4/124 (3%)
Query: 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKG 95
+ E+L+Y +I + + GIW+RD++ K NLP + K +K+L++K LIK V ++
Sbjct: 145 NQEKLVYQII-EDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASK 201
Query: 96 KKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKR 154
KK M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R
Sbjct: 202 KKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPVIQR 261
Query: 155 SGAF 158
+ +F
Sbjct: 262 NSSF 265
>gi|299747323|ref|XP_001836956.2| RNA polymerase III subunit Rpc34 [Coprinopsis cinerea okayama7#130]
gi|298407467|gb|EAU84573.2| RNA polymerase III subunit Rpc34 [Coprinopsis cinerea okayama7#130]
Length = 478
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 88/175 (50%), Gaps = 23/175 (13%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
L+ E L+ I+ N + GIWT+ +K K NL I+ + +K+L K LIK V ++ +
Sbjct: 81 LSGEENLVLSHIK-NSGNEGIWTKHLK--AKTNLHQTIIDRCLKTLIQKRLIKRVPSVQH 137
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKV----------- 142
+K M EPS ++GG WY++ LDTEFI+ + C K I +
Sbjct: 138 PTRKIYMLEGLEPSIALTGGPWYTDNELDTEFIQHLMDACYKFISDISFPKRRDAPEGAL 197
Query: 143 ---------ATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGS 188
+ + I +S++++ + DL+ + +E ++ +VLD +I + + G+
Sbjct: 198 FPISNAPDYPSAQHIRNSLRKARLTETDLSVEHVESLLNVLVLDGKIEALPAFGT 252
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 219 ASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
A PC +CP +FC +G ++P+ C YY +WL
Sbjct: 432 AQAPCALCPSFDFCKAEGPVNPQECDYYDEWL 463
>gi|407919972|gb|EKG13191.1| RNA polymerase Rpc34 [Macrophomina phaseolina MS6]
Length = 267
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 63/101 (62%), Gaps = 3/101 (2%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
+ +ERL+Y I S+ +D G+WTR +K K N ++ K++KSL+ K L+K + ++ +
Sbjct: 1 MDPNERLVYSHI-SSAEDQGMWTRTIK--AKTNFHQTVINKALKSLEGKRLVKSITSVKH 57
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCL 134
G+K M PS+++SGG W+++G LD E I+ + + L
Sbjct: 58 PGRKIYMLAHLTPSEEVSGGPWHTDGELDIELIEQISTVIL 98
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 8/108 (7%)
Query: 144 TLEGISDSIKRSGAFK-VDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYK 202
T I + I++SG + V + + + ++ +V D ++ + + G +
Sbjct: 163 TATSILEFIEKSGVIEGVVIREMDLRSLLENMVFDGKLERIGAMGYRSVRGA-MDAATDA 221
Query: 203 NVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
V++G G G PCG CP N C G +S C Y+ +WL
Sbjct: 222 EVAEGYGNG------LTQAPCGRCPVFNLCEEGGPVSASNCAYFDEWL 263
>gi|354543012|emb|CCE39730.1| hypothetical protein CPAR2_601500 [Candida parapsilosis]
Length = 319
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 65/97 (67%), Gaps = 3/97 (3%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
S+TD ER+IY I +++++ GIWT+ +K K NL +IV+K +K+L+++ IK + ++
Sbjct: 78 SMTDDERMIYSYIEASQRE-GIWTKTLKA--KTNLHQHIVSKCLKNLEHQRYIKSIKSVK 134
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVV 129
+ +K M +PS D++GG W+++ LDTEFI +
Sbjct: 135 HPTRKIYMLYHLQPSIDVTGGPWFTDSELDTEFIDTI 171
>gi|119630644|gb|EAX10239.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa, isoform
CRA_a [Homo sapiens]
Length = 153
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 74/124 (59%), Gaps = 4/124 (3%)
Query: 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKG 95
+ E+L+Y +I + + GIW+RD++ K NLP + K +K+L++K LIK V ++
Sbjct: 6 NQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASK 62
Query: 96 KKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKR 154
KK M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R
Sbjct: 63 KKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPMIQR 122
Query: 155 SGAF 158
+ +F
Sbjct: 123 NSSF 126
>gi|432948705|ref|XP_004084130.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like,
partial [Oryzias latipes]
Length = 191
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 63/100 (63%), Gaps = 3/100 (3%)
Query: 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKG 95
+ E+L+Y +I + + GIW+RD++ K NLP + K +K+L++K LIK V ++
Sbjct: 90 NQEKLVYQII-EDAGNKGIWSRDIR--FKSNLPLTEINKILKNLESKKLIKAVKSVAASK 146
Query: 96 KKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLK 135
KK M +P + ++GGAWYS+ ++EF++V+ QC K
Sbjct: 147 KKVYMLYNVQPDRSVTGGAWYSDQDFESEFVEVLNQQCFK 186
>gi|255732355|ref|XP_002551101.1| hypothetical protein CTRG_05399 [Candida tropicalis MYA-3404]
gi|240131387|gb|EER30947.1| hypothetical protein CTRG_05399 [Candida tropicalis MYA-3404]
Length = 331
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 89/188 (47%), Gaps = 32/188 (17%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
S+TD E +IY I ++ ++ GIWT+ +K K NL +IV K +KSL+N IK + ++
Sbjct: 79 SMTDDEAMIYSYIENSGRE-GIWTKTIKA--KTNLHQHIVQKCLKSLENNRYIKSIKSVK 135
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKV---------- 142
+ +K M +PS D++GG W+++ LDTEFI + C + I+ +
Sbjct: 136 HPTRKIYMLYNLQPSIDVTGGPWFTDSELDTEFIDTLVEVCWRFIVAKTIYIQNPESEDY 195
Query: 143 -----------------ATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185
L+ I D I S V+L I + ++ D++I EV
Sbjct: 196 DSSSNPLQTSHHNHHRGVDLDQIVDYINSSNITSVELGINDIRSLCDVLIYDDRIEEVGG 255
Query: 186 N--GSGEF 191
N SG F
Sbjct: 256 NQENSGIF 263
>gi|428176636|gb|EKX45520.1| DNA-directed RNA polymerase III subunit RPC34 [Guillardia theta
CCMP2712]
Length = 162
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 83/173 (47%), Gaps = 19/173 (10%)
Query: 82 KSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVK--SQCLKQIIK 139
+ LIK+ ++H KK + E EPS +++GG WY+ G LDTE ++ + C + +
Sbjct: 3 RKLIKDFTSVHTGKKKMYILNELEPSAELTGGNWYTSGELDTEMVESSAQIALCFFNMRQ 62
Query: 140 LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKV 199
K ++ + D +K K DLT +++ ++V ++ D Q+ V+S N+ G+
Sbjct: 63 RKGGSVAEVRDFLKAKDVIKCDLTMEEVFQLVETLLYDGQVERVRSE------NVSPGEA 116
Query: 200 CYKNVSKGGGGGEPKTG--SSASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
++ V++ PK +S+P +CP P P C Y WL
Sbjct: 117 TFRVVNR------PKVSLDHLSSIPTSICPTAQSSFPP---KPSDCPYVDYWL 160
>gi|328849993|gb|EGF99164.1| hypothetical protein MELLADRAFT_94867 [Melampsora larici-populina
98AG31]
Length = 511
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 73/117 (62%), Gaps = 11/117 (9%)
Query: 22 RKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQN 81
++R +SN +D E+L+YD I S+ + G+WT+ +K + N+ + + K +KSL+N
Sbjct: 104 QQRANSNMTAD-----EKLVYDSIASSG-NTGMWTKTLKA--RTNIHQSNINKFLKSLEN 155
Query: 82 KSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVK---SQCLK 135
K+LIK V ++ +K M E +PS ++SGG WY++ LDTEFI V+ QCL+
Sbjct: 156 KNLIKSVKSVKFPTRKIYMLSELQPSIELSGGPWYTDNELDTEFITVLLRSIHQCLQ 212
>gi|237844055|ref|XP_002371325.1| DNA-directed RNA polymerases III, 39 kDa polypeptide, putative
[Toxoplasma gondii ME49]
gi|211968989|gb|EEB04185.1| DNA-directed RNA polymerases III, 39 kDa polypeptide, putative
[Toxoplasma gondii ME49]
gi|221485540|gb|EEE23821.1| DNA-directed RNA polymerases III, 39 kDa polypeptide, putative
[Toxoplasma gondii GT1]
gi|221506390|gb|EEE32025.1| DNA-directed RNA polymerases III, 39 kDa polypeptide, putative
[Toxoplasma gondii VEG]
Length = 325
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 97/206 (47%), Gaps = 24/206 (11%)
Query: 53 GIWTRDMKRELKVNLPDNIVTKSIKSLQN-KSLIKEVVNIHNKGKKHLMAVEFEPSKDIS 111
G+WT D+++ L +I+ +S+K L + LIK V +IH K +K + EP+K+I+
Sbjct: 116 GVWTADLRK--STGLQTHIIQRSVKQLCDFLKLIKPVKSIHVKNRKMYILAHLEPAKEIA 173
Query: 112 GGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFK-VDLTKQQIEEI 170
GG++YS G + ++ ++ Q + A+ + ++ + SG + + +E++
Sbjct: 174 GGSFYSNGEFNEHLVEHLRDQTRTFLQNAGTASFQALAAYTRSSGERNGATFSDEDLEKV 233
Query: 171 VRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQIN 230
+ + + +I V + G F SK +P ++VPC CP +
Sbjct: 234 LNTLEFEQKICRVPTLGQPTFV-----------WSKFPALYDP-----SAVPCSTCPVKS 277
Query: 231 FC--TPDGVISPKTCVYYTKW--LDF 252
C + ISP C Y + W LDF
Sbjct: 278 SCYSREENKISPANCEYLSSWLGLDF 303
>gi|367053057|ref|XP_003656907.1| hypothetical protein THITE_2122199 [Thielavia terrestris NRRL 8126]
gi|347004172|gb|AEO70571.1| hypothetical protein THITE_2122199 [Thielavia terrestris NRRL 8126]
Length = 376
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 110/288 (38%), Gaps = 61/288 (21%)
Query: 22 RKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQN 81
R R ++ + D ++Y +I D GIW R +K L N+ + +V IK L++
Sbjct: 81 RSREEAKKYTSLPNDETVMVYSIIDEAGAD-GIWNRTIKNRL--NMHEAVVKSCIKFLES 137
Query: 82 KSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLK 141
K I + N+ + KK + +PS+ +GG W++EG LDT FI ++ + IK K
Sbjct: 138 KGYIASMKNVEHPNKKMYIKATLKPSERATGGPWFTEGELDTAFISELEGIVF-EYIKTK 196
Query: 142 VA--------------TLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIM----EV 183
A + G + KR + T + + + D+
Sbjct: 197 SAYRGSQPHPGGSAPSSSSGATKVPKRGAVLGGETTSRGTKRAATEISTDDGTPAPAGAA 256
Query: 184 KSNGSGE---------FTNIPVGKVCYKNVSKGG-------------------------- 208
S GSG F +P G Y V++
Sbjct: 257 TSRGSGSSGHTKTRAVFLPMPAGYKHYPTVAEIAKFIHDTGITNNTTLSEADIQQLVDVL 316
Query: 209 ---GGGEPKTGSSAS-VPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
G EP G+ + PCG CP + C +SP CVY+ +WL+
Sbjct: 317 TYDGLIEPPLGNGLTEAPCGRCPVFDLCEEGAPVSPSNCVYFLQWLEL 364
>gi|393244532|gb|EJD52044.1| hypothetical protein AURDEDRAFT_111548 [Auricularia delicata
TFB-10046 SS5]
Length = 464
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 63/100 (63%), Gaps = 3/100 (3%)
Query: 38 ERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKK 97
E L+ I++ K D GIWT+ +K K +L I+T+ +KSL+ K LIK + ++ ++
Sbjct: 82 ENLVLQAIQAAKND-GIWTKHLKS--KTDLHQTIITRCLKSLEQKGLIKPIKSVKYPTRR 138
Query: 98 HLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQI 137
+ EPS +++GG WY++ LDTEFI+++ + CL+ I
Sbjct: 139 LYILSHLEPSVEVTGGPWYTDHELDTEFIRMLLAACLRFI 178
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 219 ASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
A PC CPQ FC P G ++P+ C YYT+WL
Sbjct: 426 AQAPCAQCPQFEFCDPGGPVNPRGCEYYTQWL 457
>gi|302697035|ref|XP_003038196.1| hypothetical protein SCHCODRAFT_46068 [Schizophyllum commune H4-8]
gi|300111893|gb|EFJ03294.1| hypothetical protein SCHCODRAFT_46068 [Schizophyllum commune H4-8]
Length = 483
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 87/184 (47%), Gaps = 34/184 (18%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
LT E L+ I+++K + GIWT+ +K K NL ++ K +K L K LIK V ++ +
Sbjct: 79 LTAEEGLVLSHIKASKNE-GIWTKHLK--AKTNLAQALIDKCLKVLTQKKLIKRVQSVQH 135
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKL------------- 140
+K M EPS ++GG WY++ LD FI + CLK + +
Sbjct: 136 PTRKIYMLEGVEPSVALTGGPWYTDNELDVAFINTLIRACLKIVRDMSSPRQSADKQGAL 195
Query: 141 -------KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTN 193
+ T + I +++R+ DL+++ +E ++ ++LD GE
Sbjct: 196 FPIGYQPEYPTAQKIRSALQRAHLTDTDLSEEHVESLLNVLILD-----------GEIER 244
Query: 194 IPVG 197
IPVG
Sbjct: 245 IPVG 248
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 219 ASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
+ PC +CP FC G ++P CVYYT WL
Sbjct: 438 SQAPCSICPSFQFCKEGGPVNPTECVYYTDWL 469
>gi|448533304|ref|XP_003870604.1| Rpc34 protein [Candida orthopsilosis Co 90-125]
gi|380354959|emb|CCG24475.1| Rpc34 protein [Candida orthopsilosis]
Length = 322
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 65/97 (67%), Gaps = 3/97 (3%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
S++D ER+IY I +++++ GIWT+ +K K NL +IV+K +K+L+++ IK + ++
Sbjct: 78 SMSDDERMIYSYIEASQRE-GIWTKTLK--AKTNLHQHIVSKCLKNLEHQRYIKSIKSVK 134
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVV 129
+ +K M +PS D++GG W+++ LDTEFI +
Sbjct: 135 HPTRKIYMLYHLQPSIDVTGGPWFTDSELDTEFIDTI 171
>gi|401412778|ref|XP_003885836.1| putative DNA-directed RNA polymerases III, 39 kDa polypeptide
[Neospora caninum Liverpool]
gi|325120256|emb|CBZ55810.1| putative DNA-directed RNA polymerases III, 39 kDa polypeptide
[Neospora caninum Liverpool]
Length = 311
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 94/206 (45%), Gaps = 24/206 (11%)
Query: 53 GIWTRDMKRELKVNLPDNIVTKSIKSLQN-KSLIKEVVNIHNKGKKHLMAVEFEPSKDIS 111
G+WT D+++ L +I+ +S+K L + LIK V +IH K +K + EP+K+I+
Sbjct: 108 GVWTADLRK--STGLQTHIIQRSVKQLCDFLKLIKPVKSIHVKNRKMYILAHLEPAKEIA 165
Query: 112 GGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFK-VDLTKQQIEEI 170
GG++YS G + ++ ++ Q + A+ + ++ + SG + + +E++
Sbjct: 166 GGSFYSNGEFNEHLVEHLREQTRTFLQNAGTASFQALAAYTRSSGERNGATFSDEDLEKV 225
Query: 171 VRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQIN 230
+ ++ + +I V + G F P + +PC CP +
Sbjct: 226 LNSLEFEQKICRVPTLGQPTFV----------------WSKFPALYDPSGLPCSTCPVKS 269
Query: 231 FC--TPDGVISPKTCVYYTKW--LDF 252
C + ISP C Y + W LDF
Sbjct: 270 SCYSREENKISPANCEYLSSWLGLDF 295
>gi|402471876|gb|EJW05385.1| hypothetical protein EDEG_00049 [Edhazardia aedis USNM 41457]
Length = 234
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 101/202 (50%), Gaps = 21/202 (10%)
Query: 1 MKYSFTDLYLLGLAK-GSGMSKRKRPDSNAPSDSLT--------DHERLIYDVIRSNKQD 51
+K +F DL AK S + K K+ D SL D ER+IY +I +
Sbjct: 20 IKTNFPDLSKKETAKILSNLLKTKKIDIYGSGSSLVYKKPASSFDEERIIYQLI-AETNG 78
Query: 52 MGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDIS 111
G+W RD+K +K N+P N++ K ++ ++NK +IK + ++ N K +++ + + +D++
Sbjct: 79 KGLWLRDIK--MKSNIPQNLINKILQQMENKKIIKSIKSVKNNRKIYVLYSD-KVCEDVT 135
Query: 112 GGAWYSEGSLDTEF--------IKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLT 163
GG W+++G +D EF IK + +I + E I I+R V L
Sbjct: 136 GGVWFNDGEIDDEFFNCVVKLVIKYLNDNYANEIYYKNFPSAEEIHKHIERCKISSVQLN 195
Query: 164 KQQIEEIVRAVVLDNQIMEVKS 185
+E +++ +V D I E+++
Sbjct: 196 LSDVESLLKVMVYDEYIQELET 217
>gi|238883048|gb|EEQ46686.1| hypothetical protein CAWG_05049 [Candida albicans WO-1]
Length = 330
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 96/202 (47%), Gaps = 32/202 (15%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
S++D E +IY I ++ ++ GIWT+ +K K NL +IV K +K+L+N IK + ++
Sbjct: 80 SMSDDEAMIYSYIEASGRE-GIWTKTIKA--KTNLHQHIVQKCLKNLENNRYIKSIKSVK 136
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKV---------- 142
+ +K M +PS D++GG W+++ LDTEFI+ + C + I+ +
Sbjct: 137 HPTRKIYMLYNLQPSIDVTGGPWFTDSELDTEFIETLLEVCWRFIVGKTMYIKDEEADNE 196
Query: 143 ---------------ATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNG 187
L+ + + I S V+L I + ++ DN+I EV N
Sbjct: 197 DINPLQTTYHNHHPGVNLDQLVEFINNSNITSVELGINDIRSLCDVLIYDNRIEEVGGNQ 256
Query: 188 SGEFTNIPVGKVCYKNVSKGGG 209
N + KV ++++ G
Sbjct: 257 E----NSGIFKVTWQSIIDKGN 274
>gi|392560402|gb|EIW53585.1| hypothetical protein TRAVEDRAFT_134281 [Trametes versicolor
FP-101664 SS1]
Length = 498
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 88/180 (48%), Gaps = 28/180 (15%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
++ E +I I++ + GIWT+ +K K L ++ + +KSL K+LIK V ++
Sbjct: 79 MSGEESMILSYIQAAATE-GIWTKHLKA--KTELHQTVIDRCLKSLTQKALIKAVKSVKF 135
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDS-- 151
+K M EPS +++GG WY++ LDTEFIK++ S CL+ I+ K A + DS
Sbjct: 136 PTRKIYMLAHLEPSVEMTGGPWYTDNELDTEFIKLLCSACLR-FIRDKSAPKQKGGDSES 194
Query: 152 ----------------------IKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSG 189
+ +S + L+ + +E ++ +VLD + V + G+
Sbjct: 195 SNLLYPISASPSYPTAQQLLAFLSKSRITETQLSVEHVEMLLNVLVLDGDVERVPAFGAA 254
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 215 TGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
G + PC CP +FC P G ++P+ C YY WL
Sbjct: 455 AGGLSQTPCVRCPAADFCKPGGPVNPQECTYYDTWL 490
>gi|344232616|gb|EGV64489.1| RNA polymerase Rpc34 [Candida tenuis ATCC 10573]
Length = 321
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 105/221 (47%), Gaps = 35/221 (15%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
S+++ E +IY I ++ ++ GIWT+ +K K NL +IV + +K+L+N+ IK + ++
Sbjct: 82 SMSEDEAMIYSYIEASGRE-GIWTKTIKA--KTNLHQHIVVRCLKTLENQRYIKSIKSVK 138
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI--------KVVKSQCLKQIIKLKVAT 144
+ +K M +PS D++GG W+++ LD+EFI + V S+ + + A
Sbjct: 139 HPTRKIYMLYNLQPSIDVTGGPWFTDSELDSEFIDNLLMVIWRFVASRTYPTVFQPPAAN 198
Query: 145 -----------------LEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNG 187
L I D I +S +DL I + +V D++ +E+ N
Sbjct: 199 VNILQASYPYNYTGYVDLNSIMDFIIKSEITNIDLAIHDIRALCDVLVFDDR-LEMVYNT 257
Query: 188 SGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQ 228
++ KV ++++ G G + K + ++ V Q
Sbjct: 258 VDQY------KVTWQSILDAGYGIQYKEHMTPAIESVVNKQ 292
>gi|241956760|ref|XP_002421100.1| DNA-directed RNA polymerase III subunit, putative [Candida
dubliniensis CD36]
gi|223644443|emb|CAX41258.1| DNA-directed RNA polymerase III subunit, putative [Candida
dubliniensis CD36]
Length = 330
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 66/106 (62%), Gaps = 3/106 (2%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
S++D E +IY I ++ ++ GIWT+ +K K NL +IV K +K+L+N IK + ++
Sbjct: 80 SMSDDEAMIYSYIEASGRE-GIWTKTIKA--KTNLHQHIVQKCLKNLENNRYIKSIKSVK 136
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQII 138
+ +K M +PS D++GG W+++ LDTEFI+ + C + I+
Sbjct: 137 HPTRKIYMLYNLQPSIDVTGGPWFTDSELDTEFIETLLEVCWRFIV 182
>gi|68473450|ref|XP_719283.1| hypothetical protein CaO19.13051 [Candida albicans SC5314]
gi|68473689|ref|XP_719169.1| hypothetical protein CaO19.5608 [Candida albicans SC5314]
gi|46440974|gb|EAL00275.1| hypothetical protein CaO19.5608 [Candida albicans SC5314]
gi|46441094|gb|EAL00394.1| hypothetical protein CaO19.13051 [Candida albicans SC5314]
Length = 330
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 66/106 (62%), Gaps = 3/106 (2%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
S++D E +IY I ++ ++ GIWT+ +K K NL +IV K +K+L+N IK + ++
Sbjct: 80 SMSDDEAMIYSYIEASGRE-GIWTKTIKA--KTNLHQHIVQKCLKNLENNRYIKSIKSVK 136
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQII 138
+ +K M +PS D++GG W+++ LDTEFI+ + C + I+
Sbjct: 137 HPTRKIYMLYNLQPSIDVTGGPWFTDSELDTEFIETLLEVCWRFIV 182
>gi|357155005|ref|XP_003576976.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like
[Brachypodium distachyon]
Length = 296
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 95/213 (44%), Gaps = 15/213 (7%)
Query: 53 GIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKH------LMAVEFEP 106
G+ + D++ L +L VT+ +L ++K+V + + ++ M EP
Sbjct: 84 GMSSGDLQAAL--DLTPATVTRLTNALVVLGVLKKVPAVRSPRFRNRQAPVVFMDARVEP 141
Query: 107 SKDISGGA-WY-SEGSLDTEFIKVVKSQCLKQIIKL----KVATLEGISDSIKRSGAFKV 160
S +I+GG W+ +G +D + + + CL QI +L ++ + G
Sbjct: 142 SAEITGGGRWHHGDGKVDAPAVALARRACLDQIDRLPGPAATPSMVHAGLVGRGGGGPAG 201
Query: 161 DLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSAS 220
L+ + E++RA+ L + E ++N E G G+
Sbjct: 202 VLSVGHVAEVLRAMALGGVLEECRNNTGEEEGEFGGLGQGRCATGARRAGAPAWAGAMEE 261
Query: 221 VPCGVCPQINFCTPD-GVISPKTCVYYTKWLDF 252
PCGVCP I C+PD G++SP TCVY+ KWL+
Sbjct: 262 FPCGVCPVIGQCSPDGGLVSPATCVYFNKWLEM 294
>gi|146332185|gb|ABQ22598.1| DNA-directed RNA polymerase III subunit F-like protein [Callithrix
jacchus]
Length = 156
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 23/161 (14%)
Query: 110 ISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDS-IKRSGAF---------- 158
++GGAWYS+ ++EF++V+ QC K + A E + I+R+ +F
Sbjct: 1 VTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAEAARESKQNPMIQRNSSFASSHEVWKYI 60
Query: 159 ------KVDLTKQQIEEIVRAVVLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGG 211
KV+L+ + IE I+ ++ D ++ M + + G ++ Y+ V+
Sbjct: 61 CELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPII--- 117
Query: 212 EPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
P TG PCG+CP + C G ISP C+Y T+WL+F
Sbjct: 118 -PPTGL-VRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 156
>gi|258597706|ref|XP_001348381.2| RNA polymerase subunit, putative [Plasmodium falciparum 3D7]
gi|255528800|gb|AAN36820.2| RNA polymerase subunit, putative [Plasmodium falciparum 3D7]
Length = 311
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 103/221 (46%), Gaps = 20/221 (9%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
L+D + LI+ + N Q+ GIWT D++++ K+ + V K +K L LIK+V NIH
Sbjct: 83 LSDIDFLIFTKVE-NSQNNGIWTADLRKQTKLLIHQ--VQKGVKLLCENKLIKQVNNIHV 139
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIK 153
K +K + + E S+ + GG++Y++G + + + ++ + +++ + + IK
Sbjct: 140 KNRKMYILYDLEASEKVIGGSFYTDGEFNKKVVDYIRENICFYLYNNNNSSVPSVINYIK 199
Query: 154 RSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEP 213
+ ++ I +++ + + +I KSN E + Y N
Sbjct: 200 KLNNSVDYFSENDIYRVIKTLSYEERINIYKSNNDEEL-------IYYYN--------NE 244
Query: 214 KTGSSASVPCGVCPQINFCTPD--GVISPKTCVYYTKWLDF 252
K + PC C N C D I+P++C+Y +L+
Sbjct: 245 KKNFLYNFPCFSCNLFNKCNSDINTTINPRSCMYLNFYLNL 285
>gi|390605124|gb|EIN14515.1| RNA polymerase Rpc34 [Punctularia strigosozonata HHB-11173 SS5]
Length = 242
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Query: 53 GIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISG 112
GIWT+ +K K L ++ + +KSL K LIK + ++ + +K M EPS +++G
Sbjct: 102 GIWTKHIK--AKTELHQTVIDRCLKSLTQKQLIKSIKSVKHPTRKLYMLYHLEPSVELTG 159
Query: 113 GAWYSEGSLDTEFIKVVKSQCLKQI 137
G WY++ LDTEFIK++ S CL+ I
Sbjct: 160 GPWYTDNELDTEFIKLLSSACLRFI 184
>gi|119188853|ref|XP_001245033.1| hypothetical protein CIMG_04474 [Coccidioides immitis RS]
Length = 289
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 60/94 (63%), Gaps = 3/94 (3%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+L ERL+Y+VI S + G+WT+ +K + NL I+ + +KSL+ K+ IK V N+
Sbjct: 95 NLNAEERLVYNVIHSTGR-QGVWTKTIK--ARTNLHQTIMNRCLKSLEAKNYIKSVRNVK 151
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
+K M +PS++++GGAW+++G LD +FI
Sbjct: 152 YPQRKIYMLAGLQPSEEVTGGAWFTDGVLDADFI 185
>gi|118352502|ref|XP_001009522.1| RNA polymerase Rpc34 subunit family protein [Tetrahymena
thermophila]
gi|89291289|gb|EAR89277.1| RNA polymerase Rpc34 subunit family protein [Tetrahymena
thermophila SB210]
Length = 286
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 107/231 (46%), Gaps = 25/231 (10%)
Query: 28 NAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKE 87
N + L E +Y +I K + GI +D+ K + +TK + L+ K+ IK
Sbjct: 72 NVAASDLPQQEFQVYKIIFQAK-NKGIDRKDIGN--KTGIATGTLTKILNQLKKKNWIKS 128
Query: 88 VVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEG 147
V ++ GK E S+ ISGG WY +G L+ + I + S+ + + T E
Sbjct: 129 VKGANSTGK--------ELSESISGGIWYKDGVLNKDLIDELCSKIENHMNHNPIMTEEQ 180
Query: 148 ISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEF---------TNIPVGK 198
I ++ + + ++L ++ + +I+ ++ D++I +VK+ + + I +
Sbjct: 181 IIQLLRVNSS--INLEQRHVLQIINLLLFDDKIEKVKTITTSTNSSTAQKQGTSQIQKYR 238
Query: 199 VCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKW 249
+ N SK P + PCG CP IN C P G ISP+ C+Y+ W
Sbjct: 239 LSNWNKSKDHISTIP---ALTKTPCGHCPLINECVPGGKISPENCIYFNDW 286
>gi|66475946|ref|XP_627789.1| RNA polymerase III C34 subunit; rpc34p ortholog [Cryptosporidium
parvum Iowa II]
gi|32399034|emb|CAD98274.1| DNA-directed RNA polymerases iii 39 Kd polypeptide, possible
[Cryptosporidium parvum]
gi|46229200|gb|EAK90049.1| RNA polymerase III C34 subunit; rpc34p ortholog [Cryptosporidium
parvum Iowa II]
gi|323508939|dbj|BAJ77362.1| cgd6_4580 [Cryptosporidium parvum]
gi|323510447|dbj|BAJ78117.1| cgd6_4580 [Cryptosporidium parvum]
Length = 319
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 107/227 (47%), Gaps = 17/227 (7%)
Query: 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNK-SLIKEVVN 90
+ L++ E L++ I + + GIWT D+++ L ++V +++K L N +LI+ V +
Sbjct: 93 NKLSNEEYLVFCSIE-DAGNQGIWTADIRK--NTGLQTHVVQRAVKVLCNDWNLIRPVKS 149
Query: 91 IHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISD 150
IH K +K + EPSK++SGG +Y G D F+ +K + + I + TL+ I +
Sbjct: 150 IHVKNRKVYILASLEPSKELSGGTFYENGEFDMAFVDSIKEKIISFIDSKRKCTLQEILE 209
Query: 151 SIKR-----SGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVS 205
I S + + +++ ++ ++ ++++ +I+ VK S N +C K
Sbjct: 210 FINYDMNMDSSSARKNISLSDLQSVINMLIVELKIICVKGGNSNSNENF---FMCLK--- 263
Query: 206 KGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
T + VPC CP C+ C K++D+
Sbjct: 264 --WPESLSVTPEAEDVPCLACPVFETCSWSFESQILPCPQLCKYIDY 308
>gi|190345971|gb|EDK37952.2| hypothetical protein PGUG_02050 [Meyerozyma guilliermondii ATCC
6260]
Length = 306
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 61/94 (64%), Gaps = 3/94 (3%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
S++D E +IY I ++ ++ GIWT+ +K K NL +IV + +KSL+N+ IK + ++
Sbjct: 78 SMSDDEAMIYSYIEASGRE-GIWTKTIKA--KTNLHQHIVARCLKSLENQRYIKSIKSVK 134
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
+ +K M +PS +++GG W+++ LDTEFI
Sbjct: 135 HPTRKIYMLYNLQPSIEVTGGPWFTDSELDTEFI 168
>gi|392558473|gb|EIW51661.1| hypothetical protein TRAVEDRAFT_137014 [Trametes versicolor
FP-101664 SS1]
Length = 423
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 87/173 (50%), Gaps = 26/173 (15%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
L E L+ D IR+ + GIWT+ +K K L +V + +KSL + LIK V ++ +
Sbjct: 79 LDSEEGLVLDRIRTAGVE-GIWTKHIK--AKTQLHQTVVDRCLKSLTKRQLIKTVPDVRH 135
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQI-------IKLKVAT-- 144
+K + +P+ +++GG WY++ LDTEFIK++ CLK + +K + T
Sbjct: 136 PTRKTYILASLQPATELTGGPWYTDKELDTEFIKLLSDVCLKIVQDRSFPRVKERQETEH 195
Query: 145 --------------LEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEV 183
+ + +++S + LT + +E ++ +VLD +I ++
Sbjct: 196 RPLYPCSHTAYATSQQHVQTFLQKSRVTETALTVEHVEMLLDVLVLDGKIEKI 248
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 221 VPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
PC CP+ +FC+ G ++PK C YY WL
Sbjct: 384 TPCLRCPKFDFCSEQGSVNPKECAYYDPWL 413
>gi|146420852|ref|XP_001486379.1| hypothetical protein PGUG_02050 [Meyerozyma guilliermondii ATCC
6260]
Length = 306
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 61/94 (64%), Gaps = 3/94 (3%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
S++D E +IY I ++ ++ GIWT+ +K K NL +IV + +KSL+N+ IK + ++
Sbjct: 78 SMSDDEAMIYSYIEASGRE-GIWTKTIKA--KTNLHQHIVARCLKSLENQRYIKSIKSVK 134
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
+ +K M +PS +++GG W+++ LDTEFI
Sbjct: 135 HPTRKIYMLYNLQPSIEVTGGPWFTDSELDTEFI 168
>gi|71033063|ref|XP_766173.1| RNA polymerase subunit [Theileria parva strain Muguga]
gi|68353130|gb|EAN33890.1| RNA polymerase subunit, putative [Theileria parva]
Length = 295
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 100/202 (49%), Gaps = 16/202 (7%)
Query: 53 GIWTRDMKRELKVNLPDNIVTKSIKSL-QNKSLIKEVVNIHNKGKKHLMAVEFEPSKDIS 111
GIWT D+++ L +++ N V + +K L ++ LI+ + +++ K +K + EPS ++
Sbjct: 105 GIWTADIRKILGLHI--NQVQRGVKYLYESNRLIRPITDVNYKSRKLFILSTLEPSTQVT 162
Query: 112 GGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIV 171
GG++Y G + ++ ++ Q + + + ++ I+ +K + + +L + + I+
Sbjct: 163 GGSFYDNGEFNELLVEKLQEQICSFLSNNQGSNIQDITTFLKETNIIRGELLETDVNRII 222
Query: 172 RAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINF 231
+ ++L+N+I + +F I G K + +VPC C +
Sbjct: 223 KLLLLENKIFNSPLE-NNQFIYIWCGDNNLKFIE-----------DCFNVPCFGCNISDS 270
Query: 232 CT-PDGVISPKTCVYYTKWLDF 252
C D ++PK C Y T+WLD+
Sbjct: 271 CNFNDDHVNPKNCNYLTQWLDY 292
>gi|219115902|ref|XP_002178746.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409513|gb|EEC49444.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 330
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 80/142 (56%), Gaps = 6/142 (4%)
Query: 39 RLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKH 98
R++Y I +MGIWT+D++ ++ ++ + K K+L+++ LIK V +++ K KK
Sbjct: 131 RMVYQYI-ERAGNMGIWTKDLR--VQTSIQQQALNKIFKTLESRQLIKPVKSVNAKSKKL 187
Query: 99 LMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS---QCLKQIIKLKVATLEGISDSIKRS 155
M + PS +++GG WYS+ D EFI +++ C++++ TL + + + +
Sbjct: 188 YMLYDLTPSTELTGGVWYSDMEFDHEFISELRNFLLSCVRRMNGGNGVTLPEVREKMIQG 247
Query: 156 GAFKVDLTKQQIEEIVRAVVLD 177
+V L ++ ++++ +V D
Sbjct: 248 KVSRVQLAINELRQLMQTLVYD 269
>gi|448117225|ref|XP_004203204.1| Piso0_000805 [Millerozyma farinosa CBS 7064]
gi|359384072|emb|CCE78776.1| Piso0_000805 [Millerozyma farinosa CBS 7064]
Length = 322
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 113/255 (44%), Gaps = 48/255 (18%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
S+++ E +IY I ++ ++ GIWT+ +K K NL +IV + +KSL+ + IK + ++
Sbjct: 77 SMSEDEAMIYSYIEASGRE-GIWTKTLKA--KTNLHQHIVVRCLKSLEGQRYIKSIKSVK 133
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI--------KVVKSQCLKQIIKLK--- 141
+ +K M +PS +++GG W+++ LDTEFI + + S+ + +
Sbjct: 134 HPTRKIYMLYNLQPSIEVTGGPWFTDSELDTEFIDSLLKVVWRFIASKSYPTVFQAPSPN 193
Query: 142 --------------VATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNG 187
A+L I D I + VDL + + +V D++I ++
Sbjct: 194 VNIVQASFPTTHNGFASLSSIVDFIANANITTVDLAINDVRSLCEVLVYDDKIEPIEH-- 251
Query: 188 SGEFTNIPVGKVCYKNVSKGGGGGE-----------PKTGSSASVPCGVCPQINFCTPDG 236
I KV + ++ + G G + PK S A+ P ++ D
Sbjct: 252 -----MIDSYKVTWSSILEAGYGRDYENPSNEAFVSPKLKSLAA-PKHFSIFDSYSVIDS 305
Query: 237 VIS-PKTCVYYTKWL 250
++ K VY+ W+
Sbjct: 306 ALADDKDLVYFDSWI 320
>gi|385303565|gb|EIF47629.1| rna polymerase iii subunit c34 [Dekkera bruxellensis AWRI1499]
Length = 321
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 96/208 (46%), Gaps = 43/208 (20%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
+++ E ++Y I + ++ GIWT+ +K +K NL ++V + +KSL+++S IK V ++ +
Sbjct: 53 MSNDEAMVYSYIEAAGRE-GIWTKTLK--VKTNLHQHVVLRCLKSLESQSYIKAVKSVKH 109
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI--------KVVKSQCLKQIIKLK---- 141
+K M PS +++GG W+++ LDT+FI K V S+ K K
Sbjct: 110 PQRKIYMLYHLTPSIEVTGGPWFTDSELDTDFIDSLLIIVWKFVASKTFPMCFKGKGTIV 169
Query: 142 -------------------VATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIME 182
+ TL I I SG V+LT ++ + +V D ++
Sbjct: 170 GGHKQLSYPASMLSGMGGQLPTLARIGQFIASSGVTTVELTLDNVKSLCDVLVYDEKL-- 227
Query: 183 VKSNGSGEFTNIPVGKVCYKNVSKGGGG 210
E N K +++V + GGG
Sbjct: 228 -------EXVNAHCYKATWQSVLEAGGG 248
>gi|448119652|ref|XP_004203785.1| Piso0_000805 [Millerozyma farinosa CBS 7064]
gi|359384653|emb|CCE78188.1| Piso0_000805 [Millerozyma farinosa CBS 7064]
Length = 322
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 112/255 (43%), Gaps = 48/255 (18%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
S+++ E +IY I ++ ++ GIWT+ +K K NL +IV + +KSL+ + IK + ++
Sbjct: 77 SMSEDEAMIYSYIEASGRE-GIWTKTLKA--KTNLHQHIVVRCLKSLEGQRYIKSIKSVK 133
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI--------KVVKSQCLKQIIKLK--- 141
+ +K M +PS +++GG W+++ LDTEFI + + S+ + +
Sbjct: 134 HPTRKIYMLYNLQPSIEVTGGPWFTDSELDTEFIDSLLKVVWRFIASKSYPTVFQAPSSN 193
Query: 142 --------------VATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNG 187
A+L I D I + VDL + + +V D +I V+
Sbjct: 194 VNIVQASFPTTHNGFASLASIVDFIANANITTVDLAINDVRSLCEVLVYDEKIEPVEH-- 251
Query: 188 SGEFTNIPVGKVCYKNVSKGGGGGE-----------PKTGSSASVPCGVCPQINFCTPDG 236
I KV + ++ + G G + PK S A+ P ++ D
Sbjct: 252 -----MIDSYKVTWSSILEAGYGRDYENPSNEAFISPKLKSLAA-PKHFSIFDSYSVIDS 305
Query: 237 VIS-PKTCVYYTKWL 250
++ K VY+ W+
Sbjct: 306 ALADDKDLVYFDSWI 320
>gi|169595432|ref|XP_001791140.1| hypothetical protein SNOG_00455 [Phaeosphaeria nodorum SN15]
gi|111070830|gb|EAT91950.1| hypothetical protein SNOG_00455 [Phaeosphaeria nodorum SN15]
Length = 364
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 7/136 (5%)
Query: 5 FTDLYLLGLAKGSG---MSKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKR 61
D +LL L G R R D++ LT ERL+Y I Q GIW++ ++
Sbjct: 69 LCDRHLLKLMTLEGEPCWKLRSRTDADKLR-RLTPDERLLYHHI-DQVQAEGIWSKALR- 125
Query: 62 ELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSL 121
++ N+ ++TK +KSL++K L++ V+++ +K + +PS+DI+GG W SEG
Sbjct: 126 -MRTNVTQQVLTKCLKSLESKDLVQSVMSVKFPNRKMYLLKHLKPSEDIAGGPWQSEGDF 184
Query: 122 DTEFIKVVKSQCLKQI 137
DT I + S + I
Sbjct: 185 DTALIDAISSVIAQHI 200
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 221 VPCGVCPQINFCTPDGVISPKTCVYYTKWLD 251
PCG CP + C +G IS +TCVY+ +WL+
Sbjct: 328 APCGNCPVFDLCGDEGEISARTCVYFGQWLE 358
>gi|67623655|ref|XP_668110.1| DNA-directed RNA polymerases iii 39 Kd polypeptide [Cryptosporidium
hominis TU502]
gi|54659309|gb|EAL37892.1| DNA-directed RNA polymerases iii 39 Kd polypeptide [Cryptosporidium
hominis]
Length = 319
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 107/227 (47%), Gaps = 17/227 (7%)
Query: 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNK-SLIKEVVN 90
+ L++ E +++ I + + GIWT D+++ L ++V +++K L N +LI+ V +
Sbjct: 93 NKLSNEEYIVFCSIE-DAGNQGIWTADIRK--NTGLQTHVVQRAVKLLCNDWNLIRPVKS 149
Query: 91 IHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISD 150
IH K +K + EPSK++SGG +Y G D F+ +K + + I + TL+ I +
Sbjct: 150 IHVKNRKVYILASLEPSKELSGGTFYENGEFDMAFVDSIKEKIISFIDSKRKCTLQEILE 209
Query: 151 SIKR-----SGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVS 205
I S + + +++ ++ ++ ++++ +I+ VK S N +C K
Sbjct: 210 FINYDMNMDSSSARKNISLSDLQSVINMLIVELKIICVKGGNSNSNENF---FMCLK--- 263
Query: 206 KGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
T + VPC CP C+ C K++D+
Sbjct: 264 --WPESLSVTPEAEDVPCLACPVFETCSWSFESQILPCPQLCKYIDY 308
>gi|224012371|ref|XP_002294838.1| RPC6, dna-directed RNA polymerases III 39 kDa polypeptide
[Thalassiosira pseudonana CCMP1335]
gi|220969277|gb|EED87618.1| RPC6, dna-directed RNA polymerases III 39 kDa polypeptide
[Thalassiosira pseudonana CCMP1335]
Length = 237
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 88/171 (51%), Gaps = 14/171 (8%)
Query: 39 RLIYDVIRS--NKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGK 96
+++Y V+ NK GIWT D++ ++ N+ +TK K L+ + LIK + + K K
Sbjct: 35 KMVYQVVEGAGNK---GIWTVDVR--VQTNIQQATLTKIFKQLETRRLIKPIKAVTAKTK 89
Query: 97 KHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS---QCLKQI----IKLKVATLEGIS 149
K M + P+K+I+GG WY+E D EFI +++ C++++ TL+ I
Sbjct: 90 KLYMLYDLTPAKEITGGPWYTEYEFDHEFIAELRNFILMCVRRMNGGLGVGNGVTLKQIY 149
Query: 150 DSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVC 200
+ + ++ +V L+ +++++V+ + D I + GE + ++
Sbjct: 150 EKMVQANVSRVQLSLDEVQQLVQTLAFDYMIEQRGVTEDGEALFVAAKRIT 200
>gi|389746352|gb|EIM87532.1| hypothetical protein STEHIDRAFT_168250 [Stereum hirsutum FP-91666
SS1]
Length = 544
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 87/176 (49%), Gaps = 31/176 (17%)
Query: 43 DVIRSNKQ---DMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVN-IHNKGKKH 98
D++ S+ Q ++GIWT+ +K K L ++ + +KSL K +IK + +K
Sbjct: 86 DMVLSHIQAAGNLGIWTKHLK--AKTELHQTVIDRCLKSLTQKQIIKPFTGAVKYPTRKL 143
Query: 99 LMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQI-------------IKLKVATL 145
M EPS +++GG WY++G LDTEFIK++ S CL+ I + L
Sbjct: 144 YMMAHLEPSVELTGGPWYTDGELDTEFIKLLCSACLRFIRDRSFPKQKRSEDMPESSQPL 203
Query: 146 EGISDS------------IKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSG 189
IS+S +++S + LT+ +E ++ +VLD + ++ + G+
Sbjct: 204 FSISNSPSYPSSKHVLSFLEKSRITETQLTEAHVESLLNVLVLDGDVEKLPAFGAA 259
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 219 ASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
+ PCG CP FC G +P+ C YY +WL
Sbjct: 505 SQAPCGRCPVFEFCKDGGPTNPRDCAYYGEWL 536
>gi|336372678|gb|EGO01017.1| hypothetical protein SERLA73DRAFT_167202 [Serpula lacrymans var.
lacrymans S7.3]
Length = 481
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 60/104 (57%), Gaps = 3/104 (2%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
+T E ++ I+ + + GIWT+ +K K L ++ + +KSL K L+K + + +
Sbjct: 79 MTGEEAMVLSHIQVSANE-GIWTKHLK--AKTELHQTVIDRCLKSLVQKQLVKSIKAVRH 135
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQI 137
+K M EPS +++GG WY++ LDTEFIK++ + CL I
Sbjct: 136 PTRKIYMLAHLEPSVELTGGPWYTDNELDTEFIKLLSTACLHYI 179
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 219 ASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
+ PCG CP +FC G +P+ C YY +WL
Sbjct: 442 SQAPCGSCPVFDFCKEKGPTNPQECTYYEEWL 473
>gi|170592535|ref|XP_001901020.1| RNA polymerase Rpc34 subunit family protein [Brugia malayi]
gi|158591087|gb|EDP29700.1| RNA polymerase Rpc34 subunit family protein [Brugia malayi]
Length = 325
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 102/235 (43%), Gaps = 42/235 (17%)
Query: 35 TDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNK 94
T E+LIY +I + + GIW RD++ + L + K +K L+ + L+K + +
Sbjct: 112 THEEQLIYSLIEESGRK-GIWIRDIRD--RTGLSQTQMRKVLKVLEQRKLVKSIKAV-GT 167
Query: 95 GKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLK------------- 141
KK M + + ++GG +YS+ LD++F++ + C+ + +
Sbjct: 168 TKKCYMLYDMVADESLTGGTFYSDQQLDSQFVETLAHICVAMLQSKRKLSEDNHKNDPSA 227
Query: 142 ------VATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIP 195
V + E ++ I+ G +V L+ IE I+ +LD +E +++G
Sbjct: 228 AREFAFVRSTE-VAQFIREKGVCRVQLSVVDIESILSVALLDG-FIERRADGM------- 278
Query: 196 VGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
Y+ ++ P PC CP C P +ISP+ C Y+ WL
Sbjct: 279 -----YRALTAKMTRCAPSL-----CPCIHCPIQADCKPGHIISPQNCEYFVTWL 323
>gi|260940459|ref|XP_002614529.1| hypothetical protein CLUG_05307 [Clavispora lusitaniae ATCC 42720]
gi|238851715|gb|EEQ41179.1| hypothetical protein CLUG_05307 [Clavispora lusitaniae ATCC 42720]
Length = 322
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 93/205 (45%), Gaps = 35/205 (17%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
S+ D E+LIY I ++ ++ GIWT+ +K K N+ ++V + +K L+ + IK + ++
Sbjct: 77 SMNDDEQLIYSYIEASGRE-GIWTKTLKA--KTNMHQHVVMRCLKQLEGQRYIKSIKSVK 133
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS--------------------- 131
+ +K M +PS D++GG W+++ LDTEFI + +
Sbjct: 134 HPTRKIYMLYNLQPSIDVTGGPWFTDSELDTEFIDSLLTVVWRFIASKTFPAAFQDPTPN 193
Query: 132 ----QCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNG 187
Q + ATLE I + + +DL I + ++ ++++ VK
Sbjct: 194 TNILQSVYPATHTGFATLESIMEFLTEHKITNIDLAINDIRSLCEVLIFEDKVELVKDTT 253
Query: 188 SGEFTNIPVGKVCYKNVSKGGGGGE 212
V KV +++V G G +
Sbjct: 254 D-------VYKVSWQSVLDAGYGRQ 271
>gi|388582803|gb|EIM23107.1| hypothetical protein WALSEDRAFT_44075 [Wallemia sebi CBS 633.66]
Length = 528
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 81/161 (50%), Gaps = 21/161 (13%)
Query: 38 ERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKK 97
E+L Y I + + GIWT+ +K +K NL +V + +KSL+++ IK V ++ + +K
Sbjct: 87 EQLAYQYIDAAGNE-GIWTKTLK--MKTNLHQTVVNRVLKSLESRGSIKAVKSVKHPTRK 143
Query: 98 HLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLK------------------QIIK 139
M PS +++GG WY++ LDTEF+ +KS L I K
Sbjct: 144 IYMLASISPSVELTGGPWYTDNELDTEFVGQLKSAVLSYVRGCTYPKIKDNIKPIYAISK 203
Query: 140 LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQI 180
+ + + + +SG +V+L + I+ ++ ++ D ++
Sbjct: 204 VDYPNVRKVHKWLSKSGLTQVELGLEHIQSLLEVLMFDGEV 244
>gi|402590744|gb|EJW84674.1| RNA polymerase Rpc34 subunit family protein [Wuchereria bancrofti]
Length = 296
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 99/234 (42%), Gaps = 40/234 (17%)
Query: 35 TDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNK 94
T E+LIY +I + + GIW RD++ + L + K +K L+ + L+K + +
Sbjct: 83 THEEQLIYSLIEESGKK-GIWIRDIRD--RTGLSQTQMRKVLKVLEQRKLVKSIKAV-GT 138
Query: 95 GKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQII---------------- 138
KK M + + ++GG +YS+ LD++F++ + C+ +
Sbjct: 139 TKKCYMLYDMVADESLTGGTFYSDQQLDSQFVETLAHICVAMLQSKRKLSEDNHKNDPSA 198
Query: 139 --KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPV 196
+ ++ I+ G +V L+ IE I+ +LD +E +++G
Sbjct: 199 AREFAFVRSTEVAQFIREKGVCRVQLSVVDIESILSVALLDG-FIERRADGM-------- 249
Query: 197 GKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
Y+ ++ P PC CP C P +ISP+ C Y+ WL
Sbjct: 250 ----YRALTAKMTRCAPSL-----CPCIHCPIQADCKPGHIISPQNCEYFVNWL 294
>gi|195572836|ref|XP_002104401.1| GD18467 [Drosophila simulans]
gi|194200328|gb|EDX13904.1| GD18467 [Drosophila simulans]
Length = 280
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 70/126 (55%), Gaps = 7/126 (5%)
Query: 13 LAKGSGMSKR-KRPD--SNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPD 69
L KG + R K P+ S P D+ + E+++Y ++ + GIW RD++ +K NL
Sbjct: 53 LKKGEKLVYRAKDPEKKSALPKDA-DNEEKVVYGIVEEGG-NKGIWIRDIR--MKSNLNM 108
Query: 70 NIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVV 129
+ K +K+L+ K LIK V +++ KK M EP I+GGAWY + + EF+ V+
Sbjct: 109 IQLNKILKNLETKKLIKAVKSVNASKKKVYMLYNLEPDLSITGGAWYQDQDFEVEFVDVL 168
Query: 130 KSQCLK 135
QCL+
Sbjct: 169 NQQCLR 174
>gi|409046766|gb|EKM56245.1| hypothetical protein PHACADRAFT_117896 [Phanerochaete carnosa
HHB-10118-sp]
Length = 501
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 86/178 (48%), Gaps = 26/178 (14%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVV-NIH 92
L+ E L+ I++ + GIWT+ +K +K L ++ + +KSL K L+K + ++
Sbjct: 79 LSGEESLVLSHIQAAGNE-GIWTKHIK--VKTELHQTVIDRCLKSLTQKKLVKCISGSVQ 135
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQI--------------- 137
+ +K M EPS +++GG WY++ LDTEFIK++ + CLK I
Sbjct: 136 HPTRKIYMLFHLEPSTEMTGGPWYTDKELDTEFIKLLTAACLKFIRDRSFPRSKTGESSQ 195
Query: 138 -------IKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGS 188
T + + +S + LT + +E ++ +VLD + +V + G+
Sbjct: 196 RLLYPISAAPSYPTAAQVQGFLNKSRITETQLTVEHVETLLNVLVLDGDVEKVPALGA 253
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 219 ASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
A PCG CP +FC G ++P+ C++Y WL
Sbjct: 462 AQAPCGRCPVFDFCKVGGSVNPQECIHYADWL 493
>gi|115468826|ref|NP_001058012.1| Os06g0603400 [Oryza sativa Japonica Group]
gi|113596052|dbj|BAF19926.1| Os06g0603400 [Oryza sativa Japonica Group]
Length = 146
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 39/63 (61%), Gaps = 6/63 (9%)
Query: 190 EFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKW 249
++ G+VCY+ GG + G +PCGVCP+I+ C+PDGVISP TCVYY KW
Sbjct: 88 HLRDLRAGRVCYRR------GGPVQGGMMERIPCGVCPRIDECSPDGVISPSTCVYYKKW 141
Query: 250 LDF 252
L
Sbjct: 142 LQM 144
>gi|156054874|ref|XP_001593363.1| hypothetical protein SS1G_06285 [Sclerotinia sclerotiorum 1980]
gi|154704065|gb|EDO03804.1| hypothetical protein SS1G_06285 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 370
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 57/110 (51%), Gaps = 11/110 (10%)
Query: 144 TLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKN 203
TL ++ I+ SGA + LT Q I++++ ++ DN+I +V + G VCY+
Sbjct: 269 TLNELTSFIENSGATAMTLTAQDIQQLLEILIFDNKIEKVLAGPEG---------VCYRA 319
Query: 204 VSKGGGGGEPKTGSSA--SVPCGVCPQINFCTPDGVISPKTCVYYTKWLD 251
V KG + SSA VPCG CP + C G + P TC Y+ WL+
Sbjct: 320 VRKGFREDQEGGPSSALTDVPCGHCPVADLCEEGGPVGPSTCEYFQTWLN 369
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
SL+ + ++Y +I ++ GIWT+ +K + NL D + ++K L+ K LI E+ ++
Sbjct: 94 SLSSEQEIVYALIDEAAEE-GIWTKTIK--ARSNLHDAVFRTALKHLETKHLISEMKSVE 150
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQI 137
N+ +K + +PS +GGAWY++ LD EFI + I
Sbjct: 151 NRNRKMYIKSSLQPSDRATGGAWYTDNELDEEFITQISHILFDHI 195
>gi|395329460|gb|EJF61847.1| hypothetical protein DICSQDRAFT_105558 [Dichomitus squalens
LYAD-421 SS1]
Length = 517
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 86/184 (46%), Gaps = 31/184 (16%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEV--VNI 91
++ E +I I+++ + GIWT+ +K K L ++ + +KSL K LIK V V +
Sbjct: 81 MSGEEGMILSYIQASGNE-GIWTKHLK--AKTELHQTVIDRCLKSLVQKQLIKAVKSVQV 137
Query: 92 HNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDS 151
+K M EPS +++GG WY++ LDTEFIK++ S CL+ I +G S
Sbjct: 138 GYPTRKIYMLYHLEPSVEMTGGPWYTDNELDTEFIKLLCSACLRFIRDRSTPKPKGADPS 197
Query: 152 --------------------------IKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185
+ +S + L + +E+++ ++LD +I + +
Sbjct: 198 SSSANQPLHPISAAPAYPTAQQVLTFLSKSRITETQLATEHVEKLLNVLILDGEIERIPA 257
Query: 186 NGSG 189
G+
Sbjct: 258 FGAA 261
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 219 ASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
A PC CP FC G ++P+ C YY WL
Sbjct: 478 AQTPCVRCPVFEFCKDGGPVNPRECEYYGNWL 509
>gi|353238962|emb|CCA70891.1| related to RPC34-DNA-directed RNA polymerase III, 34 KD subunit
[Piriformospora indica DSM 11827]
Length = 468
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 22/148 (14%)
Query: 53 GIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISG 112
G+WT+ ++R + +LP +VT+S+K L+ + LIK + ++ +K M PS +++G
Sbjct: 100 GVWTKTLER--RTDLPQKVVTRSLKQLEKQGLIKPIKSVKYPTRKMYMLFHLTPSSEVTG 157
Query: 113 GAWYSEGSLDTEFIKVVKSQ----------------CLKQIIKLKVA----TLEGISDSI 152
G WY E D EF+ ++ Q C + + A +L I+D I
Sbjct: 158 GVWYHEQEFDQEFVNIMLEQIYGFIASKSLPKPTPRCARPLYPRSEAHRYPSLTRIADWI 217
Query: 153 KRSGAFKVDLTKQQIEEIVRAVVLDNQI 180
+++ V L + +E ++R + D I
Sbjct: 218 RKNPISDVKLKPEDVEPLLRVLEFDGLI 245
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 219 ASVPCGVCPQINFCTPDGVISPKTCVYYTKWLD 251
A PC CPQ++FC+ G ++ CVYYT WLD
Sbjct: 409 ADSPCTGCPQVDFCSETGPVNASECVYYTAWLD 441
>gi|68071909|ref|XP_677868.1| RNA polymerase subunit [Plasmodium berghei strain ANKA]
gi|56498146|emb|CAH99452.1| RNA polymerase subunit, putative [Plasmodium berghei]
Length = 280
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 102/220 (46%), Gaps = 20/220 (9%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
L+D + LI+ + N Q GIWT D++++ K+ + V K +K L LIK+V NIH
Sbjct: 76 LSDIDFLIFTKV-ENSQTNGIWTADLRKQTKLLIHQ--VQKGLKLLCECKLIKQVNNIHV 132
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIK 153
K +K + + E S+ + GG++Y +G + + + ++ + + + + + IK
Sbjct: 133 KNRKMYILYDIEASEKVIGGSFYKDGEFNKKVVDYIRENICFYLYNNNNSNVTSVINYIK 192
Query: 154 RSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEP 213
+ + I +++ ++ +++I K+N + E + Y N K +
Sbjct: 193 KLNNSVGYFSDNDIYRVIKTLLFEDRIKIYKNNDNEEL-------IYYYNNEKKKILNQ- 244
Query: 214 KTGSSASVPCGVCPQINFCTPD--GVISPKTCVYYTKWLD 251
PC C N C D I+PK+C+Y +L+
Sbjct: 245 -------FPCFSCDIFNKCNFDTKTTINPKSCLYLNVYLN 277
>gi|410080596|ref|XP_003957878.1| hypothetical protein KAFR_0F01470 [Kazachstania africana CBS 2517]
gi|372464465|emb|CCF58743.1| hypothetical protein KAFR_0F01470 [Kazachstania africana CBS 2517]
Length = 310
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 70/119 (58%), Gaps = 5/119 (4%)
Query: 10 LLGLAKGSGMSKRKRPDSNAPS--DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNL 67
L+ L K + K + D N S +++ E L+Y I ++ ++ GIW++ +K ++ NL
Sbjct: 60 LIKLIKQNNELKFQGVDFNEASKKSAMSSEEALVYSYIEASGRE-GIWSKTIK--MRTNL 116
Query: 68 PDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
++V K +KSL+++ +K V ++ +K M +PS D++GG W++EG LD EFI
Sbjct: 117 HQHVVLKCLKSLESQRYVKSVKSVKFPTRKIYMLYHLQPSVDVTGGPWFTEGELDVEFI 175
>gi|149236305|ref|XP_001524030.1| hypothetical protein LELG_04843 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452406|gb|EDK46662.1| hypothetical protein LELG_04843 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 326
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 90/181 (49%), Gaps = 26/181 (14%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
++T E +IY I + ++ GIWT+ +K K NL +IV K +K+L+N+ IK + ++
Sbjct: 78 NMTTDEAMIYAHIEALGRE-GIWTKTLKS--KTNLHQHIVAKCLKNLENQRYIKSIKSVK 134
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKV---------- 142
+K M +PS +++GG W+++ LDTEFI V S + + + K
Sbjct: 135 YPTRKIYMLYNLQPSLEVTGGPWFTDSELDTEFIDTV-SHIIWRFVVAKTFPKADMYDTN 193
Query: 143 ------------ATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGE 190
A ++ I + + S +V+L ++ + +V D++I ++ ++ GE
Sbjct: 194 PLQCNYTSSSPGANMDQIMEFLNTSNVSQVELELNDVQSLCNLLVYDDKIEQIGNDDKGE 253
Query: 191 F 191
Sbjct: 254 L 254
>gi|403221005|dbj|BAM39138.1| DNA-directed RNA polymerase III [Theileria orientalis strain
Shintoku]
Length = 260
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 104/220 (47%), Gaps = 19/220 (8%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSL-QNKSLIKEVVNIH 92
L D E ++ I + + GIWT D+++ L + V +++K+L + LIK + +IH
Sbjct: 56 LQDFEYSVFCTIET-AGNKGIWTADIRK--ITGLLIHQVQRAVKNLCEVARLIKPLTDIH 112
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSI 152
+K +K + EPS DI+GG++Y G + ++ ++ Q + K AT++ I +
Sbjct: 113 HKNRKLFILSTLEPSIDITGGSFYLNGEFNELLVEKLQEQIGLFLSKNIGATIDQILSYL 172
Query: 153 KRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGE 212
K S + +L ++ + +++ ++L+N++ N F C N K
Sbjct: 173 KSSKLIQGELVEKDVYSVIKLLILENKVYTSVKNEQKIFI------WCGNNYIKF----- 221
Query: 213 PKTGSSASVPCGVCPQINFCTPDGV--ISPKTCVYYTKWL 250
+ + VPC C I+ C V I P C Y T WL
Sbjct: 222 --SEEAFEVPCFSCNLIDSCNFGLVHKICPSKCKYMTAWL 259
>gi|344300161|gb|EGW30501.1| 34-kDa subunit of RNA polymerase III (C) [Spathaspora passalidarum
NRRL Y-27907]
Length = 317
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 59/93 (63%), Gaps = 3/93 (3%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
+TD E ++Y I ++ ++ GIWT+ +K + NL ++V K +KSL+ + IK + ++ +
Sbjct: 80 MTDEEAMVYSYIEASGRE-GIWTKTIKA--RTNLHQHVVAKCLKSLEGQRYIKSIKSVKH 136
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
+K M +PS +I+GG W+++ LDTEFI
Sbjct: 137 PTRKIYMLYNLQPSIEITGGPWFTDSELDTEFI 169
>gi|321451182|gb|EFX62917.1| hypothetical protein DAPPUDRAFT_130662 [Daphnia pulex]
Length = 298
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 98/218 (44%), Gaps = 25/218 (11%)
Query: 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKG 95
D E I I + GIW RD++ K +L + K +K+L+ K LIK V ++
Sbjct: 104 DSEEKIVMRIIEEAGNKGIWNRDIRT--KSSLNQTTLNKILKALEGKKLIKSVSSVSAAK 161
Query: 96 KKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDS--IK 153
KK M +P + ++GG+WYS+ ++E + ++ QC + + + A + D +
Sbjct: 162 KKVYMLFNLQPDRSVTGGSWYSDNEFESELVDILNQQCYRILQQKSEAAKQKSMDGPFVV 221
Query: 154 RSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEP 213
R+ +F L+ ++I +I+ + + VK N + E + + Y G P
Sbjct: 222 RNSSF---LSSKEICQIISDMKI------VKFNLTVEDIETILDTLIY----DGKIEMSP 268
Query: 214 KTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLD 251
V C C + + PK CVYY +WLD
Sbjct: 269 -------VLCWNCSN-PLRSLSSAVQPKNCVYYDQWLD 298
>gi|396459996|ref|XP_003834610.1| similar to DNA-directed RNA polymerase III subunit Rpc34
[Leptosphaeria maculans JN3]
gi|312211160|emb|CBX91245.1| similar to DNA-directed RNA polymerase III subunit Rpc34
[Leptosphaeria maculans JN3]
Length = 363
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 22 RKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQN 81
R R D++ LT ERL+Y I Q GIW++ ++ + N+ ++TK +KSL++
Sbjct: 86 RSRSDADKLR-RLTADERLLYHHI-DQVQAEGIWSKALRS--RTNVTQQVLTKCLKSLES 141
Query: 82 KSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVV 129
K L++ V+++ +K + +PS+DI+GG W SEG DT I V
Sbjct: 142 KDLVQSVMSVKYPNRKMYLLKHLQPSEDIAGGPWQSEGDFDTALIDTV 189
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 221 VPCGVCPQINFCTPDGVISPKTCVYYTKWLD 251
PCG CP + C +G IS +TCVY+ +WL+
Sbjct: 327 APCGNCPVFDLCGNEGEISARTCVYFGQWLE 357
>gi|150865268|ref|XP_001384413.2| 34-kDa subunit of RNA polymerase III (C) [Scheffersomyces stipitis
CBS 6054]
gi|149386524|gb|ABN66384.2| 34-kDa subunit of RNA polymerase III (C) [Scheffersomyces stipitis
CBS 6054]
Length = 322
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 60/93 (64%), Gaps = 3/93 (3%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
+TD E ++Y I ++ ++ GIWT+ +K K NL ++V + +K+L+N+ IK + ++ +
Sbjct: 79 MTDDEAMVYSYIEASGRE-GIWTKTIKA--KTNLHQHVVVRCLKALENQRYIKSIKSVKH 135
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
+K M +PS +++GG W+++ LDTEFI
Sbjct: 136 PTRKIYMLYNLQPSIEVTGGPWFTDSELDTEFI 168
>gi|392590466|gb|EIW79795.1| hypothetical protein CONPUDRAFT_144945 [Coniophora puteana
RWD-64-598 SS2]
Length = 562
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
++ E ++ I++ + GIWT+ +K K L ++ + +KSL K L+K + +
Sbjct: 79 MSGEEAMVLGHIKAAANE-GIWTKHLK--AKTELHQTVIDRCLKSLVQKQLVKSIKAVRF 135
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQI 137
+K M EPS +++GG WY++ LDTEFIK++ + CL I
Sbjct: 136 PTRKIYMLAHLEPSVELTGGPWYTDNELDTEFIKLLSAACLHYI 179
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 219 ASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
+ PCG CP +FC G +P C+YY +W
Sbjct: 509 SQAPCGACPVFDFCHEKGPTNPVECIYYDEWF 540
>gi|156102106|ref|XP_001616746.1| DNA-directed RNA polymerases III 39 kDa polypeptide [Plasmodium
vivax Sal-1]
gi|148805620|gb|EDL47019.1| DNA-directed RNA polymerases III 39 kDa polypeptide, putative
[Plasmodium vivax]
Length = 303
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 104/221 (47%), Gaps = 20/221 (9%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
L+D + LI+ + N Q+ GIWT D++++ K+ + V K +K L LIK+V NIH
Sbjct: 91 LSDIDFLIFTKV-ENSQNNGIWTADLRKQTKLLIHQ--VQKGVKLLCECKLIKQVNNIHV 147
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIK 153
K +K + + E S+ + GG++Y++G + + + ++ + + + + + IK
Sbjct: 148 KNRKMYILYDLEASEKVIGGSFYTDGEFNKKVVDYIRENICFYLYNNNNSNVLSVINYIK 207
Query: 154 RSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEP 213
+ + I +++ ++ + +I ++ NG+ E + Y N
Sbjct: 208 NLNSSIGYFSDNDIYRVIKTLLYEERI-KIYKNGNDEEI------IYYYN--------NE 252
Query: 214 KTGSSASVPCGVCPQINFCTPD--GVISPKTCVYYTKWLDF 252
K ++ PC C N C D I+PK CVY +L+
Sbjct: 253 KKSYFSNFPCFSCDIFNKCNSDTKTAINPKNCVYLNFYLNL 293
>gi|451850732|gb|EMD64033.1| hypothetical protein COCSADRAFT_116947 [Cochliobolus sativus
ND90Pr]
Length = 368
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
LT ERLIY I Q GIW++ ++ + N+ +TK +KSL++K L++ V+++ N
Sbjct: 100 LTPDERLIYSYI-DQVQTEGIWSKALRS--RTNVTQQTLTKCLKSLESKDLVQSVMSVKN 156
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVV 129
+K + +PS+DI+GG W SEG D I +
Sbjct: 157 PNRKMYLLKHLKPSEDIAGGPWQSEGDFDMALIDTI 192
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 221 VPCGVCPQINFCTPDGVISPKTCVYYTKWLD 251
PCG CP + C +G IS +TCVY+ +WL+
Sbjct: 332 APCGNCPVFDLCGDEGEISARTCVYFGQWLE 362
>gi|171695538|ref|XP_001912693.1| hypothetical protein [Podospora anserina S mat+]
gi|170948011|emb|CAP60175.1| unnamed protein product [Podospora anserina S mat+]
Length = 403
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 3/120 (2%)
Query: 18 GMSKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIK 77
G R R D+ + + RL+Y I QD G+W R +K L++N+ D + IK
Sbjct: 77 GWKWRSREDAKKYTSLPDEPTRLVYGEIDQAGQD-GVWIRHIK--LRINIQDATLKACIK 133
Query: 78 SLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQI 137
L++K I + N+ +K + + +PS+ +GG W+++G LD FIKV++ + I
Sbjct: 134 FLESKGFISSMTNVEMPNRKMYIRADLKPSERATGGPWFTDGELDEAFIKVIEGIIFEYI 193
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 210 GGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
G P + + PCG CP C G ++P TCVY+ +WL
Sbjct: 347 GPPPLSSAVTEAPCGKCPVFELCQEGGPVAPSTCVYFQEWL 387
>gi|451995926|gb|EMD88393.1| hypothetical protein COCHEDRAFT_1181344 [Cochliobolus
heterostrophus C5]
Length = 370
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
LT ERLIY I Q G+W++ ++ + N+ +TK +KSL++K L++ V+++ N
Sbjct: 102 LTPDERLIYSYI-DQAQTEGVWSKALRS--RANVTQQTLTKCLKSLESKDLVQSVMSVKN 158
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVV 129
+K + PS+DI+GG W SEG D I +
Sbjct: 159 PNRKMYLLKHLTPSEDIAGGPWQSEGDFDMALIDTI 194
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 221 VPCGVCPQINFCTPDGVISPKTCVYYTKWLD 251
PCG CP + C +G IS +TCVY+ +WL+
Sbjct: 334 APCGNCPVFDLCGDEGEISARTCVYFGQWLE 364
>gi|389585754|dbj|GAB68484.1| DNA-directed RNA polymerases III 39 kDa polypeptide, partial
[Plasmodium cynomolgi strain B]
Length = 286
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 104/222 (46%), Gaps = 20/222 (9%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
L+D + LI+ + N Q+ GIWT D++++ K+ + V K +K L LIK+V NIH
Sbjct: 82 ELSDIDFLIFTKV-ENSQNNGIWTADLRKQTKLLIHQ--VQKGVKLLCECKLIKQVNNIH 138
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSI 152
K +K + + E S+ + GG++Y++G + + + ++ + + + + + I
Sbjct: 139 VKNRKMYILYDLEASEKVIGGSFYTDGEFNKKVVDYIRENICFYLYNNNNSNVLSVINYI 198
Query: 153 KRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGE 212
K + + I +++ ++ + +I ++ NG+ E ++ Y
Sbjct: 199 KNLNSSIGYFSDNDIYRVIKTLLYEERI-KIYKNGNDE-------EIIY-------YYNN 243
Query: 213 PKTGSSASVPCGVCPQINFCTPD--GVISPKTCVYYTKWLDF 252
K ++ PC C N C D I+PK CVY +L+
Sbjct: 244 EKKNYFSNFPCFSCDIFNKCNSDTKTAINPKNCVYLNFYLNL 285
>gi|221060302|ref|XP_002260796.1| RNA polymerase subunit [Plasmodium knowlesi strain H]
gi|193810870|emb|CAQ42768.1| RNA polymerase subunit, putative [Plasmodium knowlesi strain H]
Length = 301
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 104/221 (47%), Gaps = 20/221 (9%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
L+D + LI+ + N Q+ GIWT D++++ K+ + V K +K L LIK+V NIH
Sbjct: 73 LSDIDFLIFTKV-ENSQNNGIWTADLRKQTKLLIHQ--VQKGVKLLCECKLIKQVNNIHV 129
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIK 153
K +K + + E S+ + GG++Y++G + + + ++ + + + + + IK
Sbjct: 130 KNRKMYILYDLEASEKVIGGSFYTDGEFNKKVVDYIRENICFYLYNNNNSNVLSVINYIK 189
Query: 154 RSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEP 213
+ + I +++ ++ + +I ++ NG+ E ++ Y
Sbjct: 190 NLNSSIGYFSDNDIYRVIKTLLYEERI-KIYKNGNDE-------EIIY-------YYNNE 234
Query: 214 KTGSSASVPCGVCPQINFCTPD--GVISPKTCVYYTKWLDF 252
K ++ PC C N C D I+PK CVY +L+
Sbjct: 235 KKNYFSNFPCFSCDIFNKCNSDTKTAINPKNCVYLNFYLNL 275
>gi|154320538|ref|XP_001559585.1| hypothetical protein BC1G_01741 [Botryotinia fuckeliana B05.10]
gi|347838876|emb|CCD53448.1| similar to DNA-directed RNA polymerase III subunit Rpc34
[Botryotinia fuckeliana]
Length = 370
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 11/110 (10%)
Query: 144 TLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKN 203
TL ++ I+ SGA + LT Q I++++ ++ DN+I V + G VCY+
Sbjct: 269 TLNELTSFIENSGATAMTLTAQDIQQLLDILIFDNKIERVLAGPEG---------VCYRA 319
Query: 204 VSKGGGGGEPKTGSSA--SVPCGVCPQINFCTPDGVISPKTCVYYTKWLD 251
V KG + SA VPCG CP ++ C G + P TC Y+ WL+
Sbjct: 320 VRKGFREEQEGGPFSALTDVPCGHCPVVDLCEEGGPVGPSTCEYFQTWLN 369
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
SL+ + ++Y +I Q+ GIWT+ +K + NL D + ++K L+ K LI E+ ++
Sbjct: 94 SLSSEQEIVYALIDEAGQE-GIWTKTIK--ARSNLHDAVFRTALKHLETKHLISEMKSVE 150
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQI 137
+ +K + +PS +GGAWY++ LD EFI + I
Sbjct: 151 ARNRKMYIKSSLQPSDRATGGAWYTDNELDEEFITQISHILFDHI 195
>gi|164660610|ref|XP_001731428.1| hypothetical protein MGL_1611 [Malassezia globosa CBS 7966]
gi|159105328|gb|EDP44214.1| hypothetical protein MGL_1611 [Malassezia globosa CBS 7966]
Length = 507
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 63/105 (60%), Gaps = 3/105 (2%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
S+ +E +IY+ I+ + + GIWT+ +K + NL I+T+ +++L+ K L+K V ++
Sbjct: 85 SMDSNELIIYNHIKDARNE-GIWTKLIK--ARTNLHQTIMTRCLRTLEQKQLVKSVKSVK 141
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQI 137
+K M + PS ++SGG WY++ LDT FI + CL+ I
Sbjct: 142 FPTRKIYMLYDLTPSIELSGGPWYTDNELDTGFIHELSMACLRFI 186
>gi|294654533|ref|XP_456595.2| DEHA2A06248p [Debaryomyces hansenii CBS767]
gi|199428958|emb|CAG84551.2| DEHA2A06248p [Debaryomyces hansenii CBS767]
Length = 323
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 61/94 (64%), Gaps = 3/94 (3%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
S+++ E +IY I ++ ++ GIWT+ +K K NL +IV + +K+L+N+ IK + ++
Sbjct: 78 SMSEDEAMIYSYIEASGRE-GIWTKTIKA--KTNLHQHIVVRCLKALENQRYIKSIKSVK 134
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
+ +K M +PS +++GG W+++ LDTEFI
Sbjct: 135 HPTRKIYMLYNLQPSIEVTGGPWFTDSELDTEFI 168
>gi|320591601|gb|EFX04040.1| DNA-directed RNA polymerase 3 subunit [Grosmannia clavigera kw1407]
Length = 453
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 76/142 (53%), Gaps = 5/142 (3%)
Query: 17 SGMSKRKRPDSNAPS-DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKS 75
+G+ R RP +A L + ++Y++I D GIW R +K L N+ D+++ +
Sbjct: 75 AGLCWRYRPAVDAAKYKQLNQDQIMVYELIDDAGAD-GIWARSLKHRL--NMHDSVLKQC 131
Query: 76 IKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLK 135
IK L+ K I+++ ++ N GKK + PS+ +GG WY++ + D FI ++ + +
Sbjct: 132 IKHLEVKGYIRDMKSVENIGKKMYIKATLRPSERATGGPWYTDDTFDEAFIDQLQ-RVVF 190
Query: 136 QIIKLKVATLEGISDSIKRSGA 157
+I+ + + L +I R GA
Sbjct: 191 DLIRDRSSYLSRHGGAISRGGA 212
Score = 43.5 bits (101), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 222 PCGVCPQINFCTPDGVISPKTCVYYTKWL 250
PCG+CP + C G +SP C Y+ +WL
Sbjct: 401 PCGLCPVFDLCEDGGPVSPANCEYFNRWL 429
>gi|254574058|ref|XP_002494138.1| RNA polymerase III subunit C34 [Komagataella pastoris GS115]
gi|238033937|emb|CAY71959.1| RNA polymerase III subunit C34 [Komagataella pastoris GS115]
gi|328354043|emb|CCA40440.1| DNA-directed RNA polymerase III subunit C34 [Komagataella pastoris
CBS 7435]
Length = 317
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 59/94 (62%), Gaps = 3/94 (3%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+++ E +IY I + ++ GIWT+ +K K NL +IV + +KSL+N+S IK V ++
Sbjct: 85 NMSQDEAMIYSYIEGSGRE-GIWTKTIKA--KTNLHQHIVLRCLKSLENQSFIKSVKSVK 141
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
+ +K M PS +++GG W+++ LDTEFI
Sbjct: 142 HPTRKIYMLYHLTPSIEVTGGPWFTDSELDTEFI 175
>gi|380480792|emb|CCF42228.1| RNA polymerase Rpc34 subunit [Colletotrichum higginsianum]
Length = 394
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 71/135 (52%), Gaps = 5/135 (3%)
Query: 7 DLYLLGLAKGSGMSKRKRPDSNAPSDSL--TDHERLIYDVIRSNKQDMGIWTRDMKRELK 64
D L+ ++ +G++ R R +A L TD +R++Y I D GIW++ ++ L
Sbjct: 72 DRLLIAVSSQTGLAWRWRSVEDAEKYKLCSTDEQRMVYGAIDEAGGD-GIWSKSIQNRL- 129
Query: 65 VNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTE 124
N+ D+++ ++K LQ K LI N+ + K+ + PS+ +GG W+++ +LD
Sbjct: 130 -NMHDSVLKTALKQLQGKGLIAPFKNVEHPNKRMFIKASMRPSERATGGPWFTDSALDEA 188
Query: 125 FIKVVKSQCLKQIIK 139
FI+ ++ I K
Sbjct: 189 FIEELQRVIFDYIKK 203
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 221 VPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
PCG CP + C G +S CVY+ +WL
Sbjct: 362 APCGRCPVFDLCEEGGPVSASNCVYFNRWL 391
>gi|410730683|ref|XP_003980162.1| hypothetical protein NDAI_0G05030 [Naumovozyma dairenensis CBS 421]
gi|401780339|emb|CCK73486.1| hypothetical protein NDAI_0G05030 [Naumovozyma dairenensis CBS 421]
Length = 330
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 69/119 (57%), Gaps = 5/119 (4%)
Query: 10 LLGLAKGSGMSKRKRPDSNAPS--DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNL 67
L+ L K + K + D N + S++ E L+Y I ++ ++ GIW++ +K + NL
Sbjct: 57 LIKLIKQNNELKFQAVDYNEANKKSSMSSEEALVYSYIEASGRE-GIWSKTIKA--RTNL 113
Query: 68 PDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
++V K +KSL+++ +K V ++ +K M +PS +++GG W++EG LD EFI
Sbjct: 114 HQHVVLKCLKSLESQRYVKSVKSVKFPTRKIYMLYNLQPSIEVTGGPWFTEGELDVEFI 172
>gi|346971954|gb|EGY15406.1| DNA-directed RNA polymerase III subunit RPC6 [Verticillium dahliae
VdLs.17]
Length = 393
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 67/123 (54%), Gaps = 5/123 (4%)
Query: 10 LLGLAKGSGMSKRKRPDSNAPSDSL--TDHERLIYDVIRSNKQDMGIWTRDMKRELKVNL 67
L +A SG++ R RP + A L TD +R++Y +I D GIW++ + L +N
Sbjct: 76 LNAVATQSGLAWRWRPKAEAAKYKLCTTDEQRMVYGMIDDAGGD-GIWSKTIINRLSMN- 133
Query: 68 PDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIK 127
D ++ +IK L K LI N+ + KK + +PS+ +GG W+++ +LD FI+
Sbjct: 134 -DTVMKAAIKQLHIKGLIVPFKNVEHPNKKMYIKASMQPSERATGGPWFTDQTLDEAFIE 192
Query: 128 VVK 130
++
Sbjct: 193 ELQ 195
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 9/116 (7%)
Query: 144 TLEGISDSIKRSG-AFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYK 202
T+ I+ I ++G + L I+++V +V D + ++ G K
Sbjct: 275 TVRDIARFISQAGITTETTLGVDDIQKLVDVLVFDGLVEPIRVGGKHGLRVRRAAKQSLG 334
Query: 203 NVSKGG--------GGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
N + G G EP PCG CP + C G +S CVYY +WL
Sbjct: 335 NWAGQGADESGIERGAPEPYANGYTEAPCGRCPVFDLCEEGGPVSASNCVYYQRWL 390
>gi|302404176|ref|XP_002999926.1| DNA-directed RNA polymerase III subunit RPC6 [Verticillium
albo-atrum VaMs.102]
gi|261361428|gb|EEY23856.1| DNA-directed RNA polymerase III subunit RPC6 [Verticillium
albo-atrum VaMs.102]
Length = 390
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 67/123 (54%), Gaps = 5/123 (4%)
Query: 10 LLGLAKGSGMSKRKRPDSNAPSDSL--TDHERLIYDVIRSNKQDMGIWTRDMKRELKVNL 67
L +A SG++ R RP + A L TD +R++Y +I D GIW++ + L +N
Sbjct: 76 LNAVATQSGLAWRWRPKAEAAKYKLCTTDEQRMVYGMIDDAGGD-GIWSKTIINRLSMN- 133
Query: 68 PDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIK 127
D ++ +IK L K LI N+ + KK + +PS+ +GG W+++ +LD FI+
Sbjct: 134 -DTVMKAAIKQLHIKGLIVPFKNVEHPNKKMYIKASMQPSERATGGPWFTDQTLDEAFIE 192
Query: 128 VVK 130
++
Sbjct: 193 ELQ 195
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 9/116 (7%)
Query: 144 TLEGISDSIKRSG-AFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYK 202
T+ I+ I ++G + L I+++V +V D + ++ G K
Sbjct: 272 TVRDIARFISQAGITTETTLGVDDIQKLVDVLVFDGLVEAIRVGGKHGLRVRRAAKQSLG 331
Query: 203 NVSKGG--------GGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
N + G G EP PCG CP + C G +S CVYY +WL
Sbjct: 332 NWAGQGADESGIERGAPEPYANGYTEAPCGRCPVFDLCEEGGPVSASNCVYYQRWL 387
>gi|403217351|emb|CCK71845.1| hypothetical protein KNAG_0I00540 [Kazachstania naganishii CBS
8797]
Length = 335
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 71/122 (58%), Gaps = 5/122 (4%)
Query: 7 DLYLLGLAKGSGMSKRKRPDSN--APSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELK 64
D L+ L K + K + D++ A +++ E L+Y I ++ ++ GIW++ +K +
Sbjct: 70 DHNLIKLVKQNNELKFQAVDASEAAKKTAMSSEESLVYSYIEASGRE-GIWSKTIKA--R 126
Query: 65 VNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTE 124
NL ++V K +KSL+++ +K V ++ +K M +PS +++GG W++EG LD E
Sbjct: 127 TNLHQHVVLKCLKSLESQRYVKSVKSVKYPTRKIYMLYNLQPSVEVTGGPWFTEGELDVE 186
Query: 125 FI 126
FI
Sbjct: 187 FI 188
>gi|443894276|dbj|GAC71625.1| RNA polymerase III, subunit C34 [Pseudozyma antarctica T-34]
Length = 516
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 27/183 (14%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
L + E ++Y I+ ++ + GIWT+ +K + L I+ + +KSL+ K L+K V ++
Sbjct: 89 LDETENMVYQHIKDSRNE-GIWTKQLK--ARSGLHQTIINRCLKSLEQKQLVKAVKSVKY 145
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDS-- 151
+K M PS ++SGG WY++ LDT FI + CL I+ K G S +
Sbjct: 146 PTRKIYMLYGLTPSIELSGGPWYTDNELDTGFINELSMACL-NFIRSKSFPKNGQSRALF 204
Query: 152 -----------------IKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVK----SNGSGE 190
++ SG + +L + + ++ +V D QI ++ + G G
Sbjct: 205 PTTHTSQLPSANTVHTYLRSSGLTETELELEHVVSLLDILVYDEQIEKIPVLPFAFGGGA 264
Query: 191 FTN 193
TN
Sbjct: 265 RTN 267
>gi|312083987|ref|XP_003144089.1| RNA polymerase Rpc34 subunit family protein [Loa loa]
gi|307760747|gb|EFO19981.1| RNA polymerase Rpc34 subunit family protein [Loa loa]
Length = 294
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 100/234 (42%), Gaps = 40/234 (17%)
Query: 35 TDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNK 94
T E+LIY +I + + GIW R+++ + L + K +K L+ + L+K + +
Sbjct: 81 THEEQLIYSLIEESGKK-GIWIREIRD--RTGLSQTQMRKVLKVLEQRKLVKSIKAV-GT 136
Query: 95 GKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLK-----------VA 143
KK M + ++GG +YS+ LD++F++ + C+ + + A
Sbjct: 137 TKKCYMLYGAVADESLTGGTFYSDQQLDSQFVETLAHICVAMLQSKRKFSEDNHKNDPAA 196
Query: 144 TLE-------GISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPV 196
E ++ I+ G +V L+ IE I+ +LD ++E +++G
Sbjct: 197 AREFAFVRSTEVAQFIREKGVCRVQLSVADIESILSVALLDG-LIERRADGM-------- 247
Query: 197 GKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
Y+ + P PC CP C P VISP+ C Y+ WL
Sbjct: 248 ----YRALISKITRCAPSL-----CPCIHCPIQADCKPGHVISPQNCEYFASWL 292
>gi|310790201|gb|EFQ25734.1| RNA polymerase Rpc34 subunit [Glomerella graminicola M1.001]
Length = 396
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 68/126 (53%), Gaps = 5/126 (3%)
Query: 7 DLYLLGLAKGSGMSKRKRPDSNAPSDSL--TDHERLIYDVIRSNKQDMGIWTRDMKRELK 64
D L+ ++ +G++ R R +A L TD +R++Y I D GIW++ ++ L
Sbjct: 72 DRLLIAVSSQTGLAWRWRSVEDAEKYKLCSTDEQRMVYGAIDEAGGD-GIWSKSIQNRL- 129
Query: 65 VNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTE 124
N+ D+++ ++K LQ K LI N+ + K+ + PS+ +GG W+++ + D
Sbjct: 130 -NMHDSVLKTALKQLQGKGLIAPFKNVEHPNKRMFIKASMRPSERATGGPWFTDSAFDEA 188
Query: 125 FIKVVK 130
FI+ ++
Sbjct: 189 FIEELQ 194
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 221 VPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
PCG CP + C G +S CVY+ +WL
Sbjct: 364 APCGRCPVFDLCEEGGPVSASNCVYFERWL 393
>gi|256273367|gb|EEU08305.1| Rpc34p [Saccharomyces cerevisiae JAY291]
Length = 317
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 98/216 (45%), Gaps = 45/216 (20%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+++ E L+Y I ++ ++ GIW++ +K + NL ++V K +KSL+++ +K V ++
Sbjct: 85 TMSAEEALVYSYIEASGRE-GIWSKTIKA--RTNLHQHVVLKCLKSLESQRYVKSVKSVK 141
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIK------------- 139
+K M +PS DI+GG W+++G LD EFI + + + I +
Sbjct: 142 FPTRKIYMLYSLQPSVDITGGPWFTDGELDIEFINSLLTIVWRFISENTFPNGFKNFENG 201
Query: 140 -----------LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGS 188
+T + I + I + V+LT I + +V D+++ +V +
Sbjct: 202 PKKNVFYAPNVKNYSTTQEILEFITAAQVANVELTPSNIRSLCEVLVYDDKLEKVTHD-- 259
Query: 189 GEFTNIPVGKVCYKN-----VSKGGGGGEPKTGSSA 219
CY+ + G GEP+ G+ A
Sbjct: 260 -----------CYRATLESILQMNQGEGEPEAGNKA 284
>gi|323303202|gb|EGA57001.1| Rpc34p [Saccharomyces cerevisiae FostersB]
Length = 241
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 59/94 (62%), Gaps = 3/94 (3%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+++ E L+Y I ++ ++ GIW++ +K + NL ++V K +KSL+++ +K V ++
Sbjct: 82 TMSAEEALVYSYIEASGRE-GIWSKTIKA--RTNLHQHVVLKCLKSLESQRYVKSVKSVK 138
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
+K M +PS DI+GG W+++G LD EFI
Sbjct: 139 FPTRKIYMLYSLQPSVDITGGPWFTDGELDIEFI 172
>gi|366988061|ref|XP_003673797.1| hypothetical protein NCAS_0A08580 [Naumovozyma castellii CBS 4309]
gi|342299660|emb|CCC67416.1| hypothetical protein NCAS_0A08580 [Naumovozyma castellii CBS 4309]
Length = 339
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 59/94 (62%), Gaps = 3/94 (3%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
S++ E L+Y I ++ ++ GIW++ +K + NL ++V K +KSL+++ +K V ++
Sbjct: 103 SMSAEEALVYSYIEASGRE-GIWSKTIKA--RTNLHQHVVLKCLKSLESQRYVKSVKSVK 159
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
+K M +PS +++GG W++EG LD EFI
Sbjct: 160 FPTRKIYMLYNLQPSIEVTGGPWFTEGELDVEFI 193
>gi|443918030|gb|ELU38618.1| RNA polymerase rpc34 subunit domain-containing protein [Rhizoctonia
solani AG-1 IA]
Length = 491
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 38 ERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKK 97
E ++Y I+ K + GIWT+ +K L +I+T+++KSL+ K L+K + ++ + +K
Sbjct: 73 ESIVYKKIQEAKNE-GIWTKHLK---STELHQSIITRALKSLEKKGLVKSIKSVKHPTRK 128
Query: 98 HLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQI 137
+ +PS ++SGG WY+ ++EF++ + CL I
Sbjct: 129 IYILANLQPSVEVSGGPWYNNSEFESEFVQTLCKACLNFI 168
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 219 ASVPCGVCPQINFCTPDGVISPKTCVYYTKWLD 251
A PC CPQ +FC DG ++ + C YY+ WL+
Sbjct: 452 AQSPCHTCPQFDFCHDDGPVNARECQYYSTWLN 484
>gi|323307394|gb|EGA60670.1| Rpc34p [Saccharomyces cerevisiae FostersO]
gi|323346740|gb|EGA81021.1| Rpc34p [Saccharomyces cerevisiae Lalvin QA23]
Length = 295
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 98/216 (45%), Gaps = 45/216 (20%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+++ E L+Y I ++ ++ GIW++ +K + NL ++V K +KSL+++ +K V ++
Sbjct: 63 TMSAEEALVYSYIEASGRE-GIWSKTIKA--RTNLHQHVVLKCLKSLESQRYVKSVKSVK 119
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIK------------- 139
+K M +PS DI+GG W+++G LD EFI + + + I +
Sbjct: 120 FPTRKIYMLYSLQPSVDITGGPWFTDGELDIEFINSLLTIVWRFISENTFPNGFKNFENG 179
Query: 140 -----------LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGS 188
+T + I + I + V+LT I + +V D+++ +V +
Sbjct: 180 PKKNVFYAPNVKNYSTTQEILEFITAAQVANVELTPSNIRSLCEVLVYDDKLEKVTHD-- 237
Query: 189 GEFTNIPVGKVCYKN-----VSKGGGGGEPKTGSSA 219
CY+ + G GEP+ G+ A
Sbjct: 238 -----------CYRVTLESILQMNQGEGEPEAGNKA 262
>gi|406606568|emb|CCH42067.1| DNA-directed RNA polymerase III subunit [Wickerhamomyces ciferrii]
Length = 300
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 87/175 (49%), Gaps = 26/175 (14%)
Query: 29 APSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEV 88
A ++T E +IY I ++ ++ GIWT+ +K + NL ++V + +KSL+ + IK V
Sbjct: 75 AKRANMTSDESIIYSYIEASGRE-GIWTKTIKA--RTNLHQHVVLRCLKSLEGQRFIKSV 131
Query: 89 VNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI--------KVVKSQCLKQII-- 138
++ +K M PS +++GG W+++G LD+EF+ + V ++ I
Sbjct: 132 KSVKFPTRKIYMLYHLTPSIEVTGGPWFTDGELDSEFVDSLLTIVWRFVTNKTFPNIFND 191
Query: 139 -------KLKVA------TLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQI 180
+L A TLE I + I RS +L + I + + +V D+++
Sbjct: 192 DANLKKNQLYAANYKNYSTLEEILEFITRSQVTSEELIENDIRSLCQVLVYDDKL 246
>gi|366999516|ref|XP_003684494.1| hypothetical protein TPHA_0B03880 [Tetrapisispora phaffii CBS 4417]
gi|357522790|emb|CCE62060.1| hypothetical protein TPHA_0B03880 [Tetrapisispora phaffii CBS 4417]
Length = 360
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 59/98 (60%), Gaps = 3/98 (3%)
Query: 29 APSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEV 88
A ++T E L+Y I ++ ++ GIWT+ +K + NL ++V K +KSL+++ +K V
Sbjct: 85 AKKSTMTAEESLVYSYIEASGRE-GIWTKTIKA--RTNLHQHVVLKCLKSLESQRYVKSV 141
Query: 89 VNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
++ +K M +PS DI+GG W+++ LD EFI
Sbjct: 142 KSVKYPTRKIYMLYNLQPSIDITGGPWFTDSELDVEFI 179
>gi|428672752|gb|EKX73665.1| DNA-directed RNA polymerase III, putative [Babesia equi]
Length = 295
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 97/203 (47%), Gaps = 22/203 (10%)
Query: 54 IWTRDMKR--ELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDIS 111
IW+ D+KR L V+L +TK++ + LIK V +I K ++ + EP+ +IS
Sbjct: 105 IWSADIKRITGLSVSLMVQRITKNLS--EGLRLIKPVRSIRYKNRRLYVLSHIEPADEIS 162
Query: 112 GGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIV 171
GGA+Y +G + ++ +K Q + K TL I+D +K S + DL ++ + +V
Sbjct: 163 GGAFYYDGEFNEVLVEGMKDQVAMYLSKNMGRTLTQITDYLKSSNTIQGDLLEENVLAVV 222
Query: 172 RAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSA-SVPCGVCPQIN 230
+VL+N++ SG N GK Y G +PK A S PC C +
Sbjct: 223 NLLVLENKVF------SGILEN---GKCIY----IWSGASDPKFAEDAFSTPCFSCNLAD 269
Query: 231 FCTPDGV---ISPKTCVYYTKWL 250
C GV P C + +KWL
Sbjct: 270 ECRL-GVQDKFCPSNCDFLSKWL 291
>gi|401623803|gb|EJS41887.1| rpc34p [Saccharomyces arboricola H-6]
Length = 317
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 59/94 (62%), Gaps = 3/94 (3%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+++ E L+Y I ++ ++ GIW++ +K + NL ++V K +KSL+++ +K V ++
Sbjct: 85 TMSAEEALVYSYIEASGRE-GIWSKTIKA--RTNLHQHVVLKCLKSLESQRYVKSVKSVK 141
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
+K M +PS DI+GG W+++G LD EFI
Sbjct: 142 FPTRKIYMLYSLQPSVDITGGPWFTDGELDIEFI 175
>gi|323352456|gb|EGA84957.1| Rpc34p [Saccharomyces cerevisiae VL3]
Length = 317
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 98/216 (45%), Gaps = 45/216 (20%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+++ E L+Y I ++ ++ GIW++ +K + NL ++V K +KSL+++ +K V ++
Sbjct: 85 TMSAEEALVYSYIEASGRE-GIWSKTIKA--RTNLHQHVVLKCLKSLESQRYVKSVKSVK 141
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIK------------- 139
+K M +PS DI+GG W+++G LD EFI + + + I +
Sbjct: 142 FPTRKIYMLYSLQPSVDITGGPWFTDGELDIEFINSLLTIVWRFISENTFPNGFKNFENG 201
Query: 140 -----------LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGS 188
+T + I + I + V+LT I + +V D+++ +V +
Sbjct: 202 PKKNVFYAPNVKNYSTTQEILEFITAAQVANVELTPSNIRSLCEVLVYDDKLEKVTHD-- 259
Query: 189 GEFTNIPVGKVCYKN-----VSKGGGGGEPKTGSSA 219
CY+ + G GEP+ G+ A
Sbjct: 260 -----------CYRVTLESILQMNQGEGEPEAGNKA 284
>gi|6324330|ref|NP_014400.1| Rpc34p [Saccharomyces cerevisiae S288c]
gi|417698|sp|P32910.1|RPC6_YEAST RecName: Full=DNA-directed RNA polymerase III subunit RPC6;
Short=RNA polymerase III subunit C6; AltName: Full=C34;
AltName: Full=DNA-directed RNA polymerase III 36 kDa
polypeptide
gi|4379|emb|CAA45278.1| DNA dependent RNA polymerase c(III) subunit c34 [Saccharomyces
cerevisiae]
gi|496721|emb|CAA54572.1| RNA polymerase III [Saccharomyces cerevisiae]
gi|1302473|emb|CAA96279.1| RPC34 [Saccharomyces cerevisiae]
gi|190408995|gb|EDV12260.1| RNA polymerase III 34 kDa subunit [Saccharomyces cerevisiae
RM11-1a]
gi|207341597|gb|EDZ69606.1| YNR003Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259148951|emb|CAY82195.1| Rpc34p [Saccharomyces cerevisiae EC1118]
gi|285814651|tpg|DAA10545.1| TPA: Rpc34p [Saccharomyces cerevisiae S288c]
gi|323331758|gb|EGA73171.1| Rpc34p [Saccharomyces cerevisiae AWRI796]
gi|323335724|gb|EGA77005.1| Rpc34p [Saccharomyces cerevisiae Vin13]
gi|349580938|dbj|GAA26097.1| K7_Rpc34p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365763395|gb|EHN04924.1| Rpc34p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392296990|gb|EIW08091.1| Rpc34p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 317
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 59/94 (62%), Gaps = 3/94 (3%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+++ E L+Y I ++ ++ GIW++ +K + NL ++V K +KSL+++ +K V ++
Sbjct: 85 TMSAEEALVYSYIEASGRE-GIWSKTIKA--RTNLHQHVVLKCLKSLESQRYVKSVKSVK 141
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
+K M +PS DI+GG W+++G LD EFI
Sbjct: 142 FPTRKIYMLYSLQPSVDITGGPWFTDGELDIEFI 175
>gi|388857894|emb|CCF48559.1| related to RPC34-DNA-directed RNA polymerase III, 34 KD subunit
[Ustilago hordei]
Length = 533
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 82/169 (48%), Gaps = 23/169 (13%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
L ++E ++Y I+ ++ + GIWT+ +K ++ L I+ + +KSL+ K L+K V ++
Sbjct: 91 LDENETMVYQHIKDSRNE-GIWTKQLK--VRTGLHQTIINRCLKSLEQKQLVKAVKSVKY 147
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLK------------ 141
+K M PS ++SGG WY++ LDT FI + S + I+ K
Sbjct: 148 PTRKIYMLYGLTPSIELSGGPWYTDNELDTGFINEL-SMAILNFIRSKSFPKNGQSRALF 206
Query: 142 -------VATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEV 183
+ + + ++ SG + L + + ++ +V D QI ++
Sbjct: 207 PTSHTSQLPSANAVHSYLRNSGLTETQLEVEHVVSLLDILVYDEQIEKI 255
>gi|402221227|gb|EJU01296.1| hypothetical protein DACRYDRAFT_52685 [Dacryopinax sp. DJM-731 SS1]
Length = 503
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 84/176 (47%), Gaps = 25/176 (14%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+L E ++Y IR N GIWT+ +K K NL ++ + +K L+ + L+K V N+
Sbjct: 85 ALQGDESMVYTHIR-NSGTEGIWTKSLK--AKTNLHATVINRCLKQLEQRQLVKSVKNVK 141
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISD-- 150
+K M +PS +++GG W+++ LD FI+ + Q + I+ KV T + D
Sbjct: 142 FPTRKTYMLFNLKPSVELTGGPWFNDNELDVGFIEGL-LQAVYTFIEKKVNTQTFVGDDY 200
Query: 151 ---------------SIKR----SGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNG 187
++R SG +V L + ++ ++ +V D +I + +G
Sbjct: 201 QVWPTSRTDKYPTLADVRRFVHGSGLTEVKLEDEHVKSLLDVLVYDGKIESLPGSG 256
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 219 ASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
+ +PCG+C +FC P G ++ + C YY WL
Sbjct: 405 SEIPCGLCEVFDFCAPKGPVNARDCQYYDDWL 436
>gi|320581571|gb|EFW95791.1| RNA polymerase III subunit C34 [Ogataea parapolymorpha DL-1]
Length = 326
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 98/203 (48%), Gaps = 37/203 (18%)
Query: 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNI 91
++++ E ++Y I + ++ GIWT+ +K K NL ++V + +KSL+++S IK V ++
Sbjct: 90 NNMSSDEAMVYSYIEAAGRE-GIWTKTIKA--KTNLHQHVVQRCLKSLESQSYIKSVKSV 146
Query: 92 HNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI--------KVVKSQCLKQIIK---- 139
+K M PS +++GG W+++ LD++FI + V S+ + K
Sbjct: 147 KYPQRKIYMLYHLTPSIEVTGGPWFTDSELDSDFIDSLLIVIWRFVASKSYPKCFKKGGM 206
Query: 140 ------------LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNG 187
+ +LE IS I SG V+L+ I + + + ++++V +
Sbjct: 207 DVEQYSYPVSNNHNLPSLEEISRFIGSSGVTSVELSLSDIRSLCSVLEYEEKLVQVDN-- 264
Query: 188 SGEFTNIPVGKVCYKNVSKGGGG 210
+ K +++V + GGG
Sbjct: 265 --------LYKATWQSVLEAGGG 279
>gi|401837479|gb|EJT41403.1| RPC34-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 317
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 59/94 (62%), Gaps = 3/94 (3%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+++ E L+Y I ++ ++ GIW++ +K + NL ++V K +KSL+++ +K V ++
Sbjct: 85 TMSAEESLVYSYIEASGRE-GIWSKTIKA--RTNLHQHVVLKCLKSLESQRYVKSVKSVK 141
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
+K M +PS DI+GG W+++G LD EFI
Sbjct: 142 FPTRKIYMLYSLQPSVDITGGPWFTDGELDIEFI 175
>gi|116181350|ref|XP_001220524.1| hypothetical protein CHGG_01303 [Chaetomium globosum CBS 148.51]
gi|88185600|gb|EAQ93068.1| hypothetical protein CHGG_01303 [Chaetomium globosum CBS 148.51]
Length = 430
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 6/134 (4%)
Query: 7 DLYLLGLA-KGSGMSKRKRPDSNAPS-DSLTDHER-LIYDVIRSNKQDMGIWTRDMKREL 63
D L+G+A +GM+ R R A SL + E ++Y +I D GIW R +K
Sbjct: 63 DKLLVGIANHHAGMAWRWRSREEAKKYTSLPNDEAVMVYSIIDEAGAD-GIWNRTIKN-- 119
Query: 64 KVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDT 123
K+N+ + +V IK L+ K I + N+ + KK + PS+ +GG W++EG LDT
Sbjct: 120 KLNMHEAVVKNCIKFLETKGYIASMKNVEHPNKKMYIKATLRPSERATGGPWFTEGELDT 179
Query: 124 EFIKVVKSQCLKQI 137
FI ++ + I
Sbjct: 180 AFISELEGIVFEYI 193
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%)
Query: 210 GGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
G EP PCG CP + C G +SP CVY+ +WLD
Sbjct: 361 GAEPLASGLTEAPCGRCPVFDLCEEGGPVSPSNCVYFLQWLDL 403
>gi|330927997|ref|XP_003302086.1| hypothetical protein PTT_13779 [Pyrenophora teres f. teres 0-1]
gi|311322744|gb|EFQ89810.1| hypothetical protein PTT_13779 [Pyrenophora teres f. teres 0-1]
Length = 400
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 3/104 (2%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
LT ERL+Y I + D GIW++ ++ K N+ +TK +KSL+ K L++ V+++
Sbjct: 123 LTPDERLLYHHIDQVQAD-GIWSKALRN--KTNVTQQTLTKCLKSLEAKDLVQSVMSVKY 179
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQI 137
+K + +PS+DI+GG W ++G D I+ + K I
Sbjct: 180 PNRKMYLLKHLKPSEDIAGGIWQTDGEYDAALIEAISGAVAKYI 223
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 201 YKNVSKGGGGGEPKTGSS-ASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
Y+ V + G E K + PCG CP + C +G I+ +TCVY+ +WL
Sbjct: 343 YRTVLRNGESTESKVYNGFVDAPCGTCPVFDQCGDEGEITARTCVYFAEWL 393
>gi|45190794|ref|NP_985048.1| AER191Wp [Ashbya gossypii ATCC 10895]
gi|44983836|gb|AAS52872.1| AER191Wp [Ashbya gossypii ATCC 10895]
gi|374108272|gb|AEY97179.1| FAER191Wp [Ashbya gossypii FDAG1]
Length = 314
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 57/93 (61%), Gaps = 3/93 (3%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
++ E L+Y I ++ ++ GIWT+ +K K NL ++V K +KSL+++ +K V ++
Sbjct: 86 MSSDEALVYSYIEASGRE-GIWTKTIKA--KTNLHQHVVLKCLKSLESQRYVKSVKSVKY 142
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
+K M +PS D++GG W+++ LD EFI
Sbjct: 143 PTRKIYMLYNLQPSIDVTGGPWFTDSELDVEFI 175
>gi|313224681|emb|CBY20472.1| unnamed protein product [Oikopleura dioica]
Length = 301
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 112/260 (43%), Gaps = 44/260 (16%)
Query: 11 LGLAKGSGMSKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDN 70
LG AK M+ + + PS +++ E +Y +I K +MG+ ++ ++ V D
Sbjct: 68 LGKAKNGSMTYSYKDEITIPS-TVSATEEPVYRLIAEGK-NMGVLKSEIMAQVDVKKRD- 124
Query: 71 IVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI---- 126
+T+++ + K LIK+V K+ + P ++GGA+Y D E +
Sbjct: 125 -LTRTLAEFERKKLIKKV----GSPKQKYFLYDVTPDHTVTGGAFYDNDRFDKELVDGIM 179
Query: 127 KVVKSQCLKQII--------------KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVR 172
++K L QI+ + T I+D + K LT+ +++
Sbjct: 180 HILKPH-LTQIMDAQKQSDTHPSLLFRAASVTPGQIADWLNEKRFVKFLLTETDCRQLLD 238
Query: 173 AVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFC 232
A+VL+ + ++ P+ V+ G + PCGVCP ++ C
Sbjct: 239 ALVLEGFADRRGDEYHAQLSDKPL-------VASG----------LSFTPCGVCPLVDQC 281
Query: 233 TPDGVISPKTCVYYTKWLDF 252
P G ISP+TCVY + L++
Sbjct: 282 RPGGQISPQTCVYLDELLEW 301
>gi|254582765|ref|XP_002499114.1| ZYRO0E04114p [Zygosaccharomyces rouxii]
gi|186703770|emb|CAQ43460.1| DNA-directed RNA polymerase III subunit RPC6 [Zygosaccharomyces
rouxii]
gi|238942688|emb|CAR30859.1| ZYRO0E04114p [Zygosaccharomyces rouxii]
Length = 312
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 104/243 (42%), Gaps = 41/243 (16%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+++ E L+Y I ++ ++ GIWT+ +K K NL ++V K +KSL+++ +K V ++
Sbjct: 85 AMSAEESLVYSYIEASGRE-GIWTKTIKA--KTNLHQHVVLKCLKSLESQRYVKSVKSVK 141
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVV----------------------- 129
+K M +PS D++GG W+++ LD EFI +
Sbjct: 142 YPTRKIYMLYNLQPSIDVTGGPWFTDSELDVEFINSLLTIVWRFASDRTFPNGFKNFSGN 201
Query: 130 -KSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGS 188
K + L +T++ I D I S V+LT I + +V D++ ME S+
Sbjct: 202 DKKELLYAPNVKNYSTIQDILDFIVASQVVNVELTPANIRSLCDVLVYDDK-MEKISHDC 260
Query: 189 GEFTNIPVGKVC-YKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYT 247
T V ++ Y + GE + N P + K VY+
Sbjct: 261 YRVTLESVRQMTQYGGLISNDDDGE----------FSIFDYFNLIAPSQ--NDKEAVYFD 308
Query: 248 KWL 250
+W+
Sbjct: 309 EWI 311
>gi|367010832|ref|XP_003679917.1| hypothetical protein TDEL_0B05770 [Torulaspora delbrueckii]
gi|359747575|emb|CCE90706.1| hypothetical protein TDEL_0B05770 [Torulaspora delbrueckii]
Length = 309
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 58/94 (61%), Gaps = 3/94 (3%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+++ E L+Y I ++ ++ GIWT+ +K K NL ++V K +KSL+++ +K V ++
Sbjct: 85 AMSAEEALVYSYIEASGRE-GIWTKTIKA--KTNLHQHVVLKCLKSLESQRYVKSVKSVK 141
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
+K M +PS D++GG W+++ LD EFI
Sbjct: 142 FPTRKIYMLYNLQPSIDVTGGPWFTDSELDVEFI 175
>gi|365758618|gb|EHN00452.1| Rpc34p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 232
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 58/93 (62%), Gaps = 3/93 (3%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
++ E L+Y I ++ ++ GIW++ +K + NL ++V K +KSL+++ +K V ++
Sbjct: 1 MSAEESLVYSYIEASGRE-GIWSKTIKA--RTNLHQHVVLKCLKSLESQRYVKSVKSVKF 57
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
+K M +PS DI+GG W+++G LD EFI
Sbjct: 58 PTRKIYMLYSLQPSVDITGGPWFTDGELDIEFI 90
>gi|50306581|ref|XP_453264.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642398|emb|CAH00360.1| KLLA0D04532p [Kluyveromyces lactis]
Length = 363
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 57/93 (61%), Gaps = 3/93 (3%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
++ E L+Y I ++ ++ GIWT+ +K K NL ++V K +KSL+++ +K V ++
Sbjct: 137 MSSDEALVYSYIEASGRE-GIWTKTIKA--KTNLHQHVVLKCLKSLESQRYVKSVKSVKY 193
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
+K M +PS D++GG W+++ LD EFI
Sbjct: 194 PTRKIYMLYNLQPSIDVTGGPWFTDSELDVEFI 226
>gi|71024497|ref|XP_762478.1| hypothetical protein UM06331.1 [Ustilago maydis 521]
gi|46097727|gb|EAK82960.1| hypothetical protein UM06331.1 [Ustilago maydis 521]
Length = 540
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
L ++E L+Y I+ ++ + GIWT+ +K + L I+ + +KSL+ K L+K V ++
Sbjct: 93 LDENETLVYSHIKDSRNE-GIWTKQLK--ARTGLHQTIINRCLKSLEQKQLVKAVKSVKY 149
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
+K M PS ++SGG WY++ LDT FI
Sbjct: 150 PTRKIFMLFGLTPSIELSGGPWYTDNELDTGFI 182
>gi|363750075|ref|XP_003645255.1| hypothetical protein Ecym_2738 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888888|gb|AET38438.1| Hypothetical protein Ecym_2738 [Eremothecium cymbalariae
DBVPG#7215]
Length = 315
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 57/93 (61%), Gaps = 3/93 (3%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
++ E L+Y I ++ ++ GIWT+ +K K NL ++V K +KSL+++ +K V ++
Sbjct: 86 MSSDESLVYSYIEASGRE-GIWTKTIKA--KTNLHQHVVLKCLKSLESQRYVKSVKSVKY 142
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
+K M +PS D++GG W+++ LD EFI
Sbjct: 143 PTRKIYMLYNLQPSIDVTGGPWFTDSELDVEFI 175
>gi|336463706|gb|EGO51946.1| hypothetical protein NEUTE1DRAFT_89784 [Neurospora tetrasperma FGSC
2508]
Length = 398
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 5/119 (4%)
Query: 10 LLGLAKGSGMSKRKRPDSNAPS-DSLTDHE-RLIYDVIRSNKQDMGIWTRDMKRELKVNL 67
+G SG+S R R +A SL + E ++Y ++ D GIW R +K K+N+
Sbjct: 60 FVGNTTASGLSWRWRSREDAKKYTSLPNSEIMMVYAMVDEAGAD-GIWNRTIKN--KLNM 116
Query: 68 PDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
D+++ IK L+ K I + N+ + KK + PS +GG W++EG LDT FI
Sbjct: 117 ADSLMKHCIKYLEQKGYIASMKNVEHPNKKMYIKANLRPSDRATGGPWFTEGELDTAFI 175
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 15/123 (12%)
Query: 144 TLEGISDSIKRSG-AFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEF--TNIPVG--K 198
T+ I+ I +G L++ I+++V + D + VK NG + T IP +
Sbjct: 265 TVSDIAKFIHHAGITNNTTLSEADIQQLVDVLYYDGLVEPVKVNGRKGYRVTRIPKQDPR 324
Query: 199 VCYK-----NVSKGG-----GGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTK 248
C + + +KGG G EP PCG CP + C G +SP CVY+ +
Sbjct: 325 TCNQRRLDHDPTKGGIVTSFMGVEPSASGLMEAPCGRCPVYDMCEEGGPVSPSNCVYFRR 384
Query: 249 WLD 251
WLD
Sbjct: 385 WLD 387
>gi|350295771|gb|EGZ76748.1| RNA polymerase Rpc34 [Neurospora tetrasperma FGSC 2509]
Length = 399
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 5/119 (4%)
Query: 10 LLGLAKGSGMSKRKRPDSNAPS-DSLTDHE-RLIYDVIRSNKQDMGIWTRDMKRELKVNL 67
+G SG+S R R +A SL + E ++Y ++ D GIW R +K K+N+
Sbjct: 60 FVGNTTASGLSWRWRSREDAKKYTSLPNSEIMMVYAMVDEAGAD-GIWNRTIKN--KLNM 116
Query: 68 PDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
D+++ IK L+ K I + N+ + KK + PS +GG W++EG LDT FI
Sbjct: 117 ADSLMKHCIKYLEQKGYIASMKNVEHPNKKMYIKANLRPSDRATGGPWFTEGELDTAFI 175
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 15/123 (12%)
Query: 144 TLEGISDSIKRSG-AFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEF--TNIPVG--K 198
T+ I+ I +G L++ I+++V + D + VK NG + T IP +
Sbjct: 266 TVSDIAKFIHHAGITNNTTLSEADIQQLVDVLYYDGLVEPVKVNGRKGYRVTRIPKQDPR 325
Query: 199 VCYK-----NVSKGG-----GGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTK 248
C + + +KGG G EP PCG CP + C G +SP CVY+ +
Sbjct: 326 TCNQRRLDHDPTKGGIVTSFMGVEPSASGLMEAPCGRCPVYDMCEEGGPVSPSNCVYFRR 385
Query: 249 WLD 251
WLD
Sbjct: 386 WLD 388
>gi|340924020|gb|EGS18923.1| DNA-directed RNA polymerase III-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 400
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
Query: 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKG 95
D ++Y +I D GIW R +K K+N+ +++V IK L++K I + N+ +
Sbjct: 95 DETMMVYSIIDEAGAD-GIWNRTIKN--KLNMHESVVKNCIKYLESKGYITAMKNVEHPN 151
Query: 96 KKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQI 137
KK + PS+ +GG W++EG LDT FI+ ++ + I
Sbjct: 152 KKMYIKASLRPSERATGGPWFTEGELDTAFIQELEGIVFEYI 193
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%)
Query: 210 GGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
G EP + + PCG CP + C G +SP CVY+TKWLD
Sbjct: 343 GAEPLSNALTEAPCGRCPVFDLCEEGGPVSPSNCVYFTKWLDL 385
>gi|85112653|ref|XP_964380.1| hypothetical protein NCU00727 [Neurospora crassa OR74A]
gi|28926160|gb|EAA35144.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 410
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 5/119 (4%)
Query: 10 LLGLAKGSGMSKRKRPDSNAPS-DSLTDHE-RLIYDVIRSNKQDMGIWTRDMKRELKVNL 67
+G SG+S R R +A SL + E ++Y ++ D GIW R +K K+N+
Sbjct: 60 FVGNTTASGLSWRWRSREDAKKYTSLPNSEIMMVYAMVDEAGAD-GIWNRTIKN--KLNM 116
Query: 68 PDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
D+++ IK L+ K I + N+ + KK + PS +GG W++EG LDT FI
Sbjct: 117 ADSLMKHCIKYLEQKGYIASMKNVEHPNKKMYIKANLRPSDRATGGPWFTEGELDTAFI 175
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 15/123 (12%)
Query: 144 TLEGISDSIKRSG-AFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEF--TNIPVG--K 198
T+ I+ I +G L++ I+++V + D + VK NG + T IP +
Sbjct: 277 TVSDIAKFIHHAGITNNTTLSEADIQQLVDVLYYDGLVEPVKVNGRKGYRVTRIPKQDPR 336
Query: 199 VCYK-----NVSKGG-----GGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTK 248
C + + +KGG G EP PCG CP + C G +SP CVY+ +
Sbjct: 337 TCNQRRLDHDPTKGGIVTSFMGVEPSASGLMEAPCGRCPVYDMCEEGGPVSPSNCVYFRR 396
Query: 249 WLD 251
WLD
Sbjct: 397 WLD 399
>gi|151944532|gb|EDN62810.1| RNA polymerase C [Saccharomyces cerevisiae YJM789]
Length = 317
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 59/94 (62%), Gaps = 3/94 (3%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+++ E L+Y I ++ ++ GIW++ +K + NL ++V K +KSL+++ +K V ++
Sbjct: 85 TMSAEEALVYSYIEASGRE-GIWSKTIKA--RTNLHQHVVLKCLKSLESQRYVKSVKSVK 141
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
+K M +PS +I+GG W+++G LD EFI
Sbjct: 142 FPTRKIYMLYSLQPSVEITGGPWFTDGELDIEFI 175
>gi|358381396|gb|EHK19071.1| hypothetical protein TRIVIDRAFT_181834 [Trichoderma virens Gv29-8]
Length = 400
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 35 TDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNK 94
TD + ++Y +I + D GIWT+ +++ L N+ D+++ +IK LQ K LI N+ +
Sbjct: 101 TDEQVMVYSLIDDSGGD-GIWTQTLQKRL--NMHDSVLKNAIKQLQAKGLIAPFKNVEHP 157
Query: 95 GKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIK 127
KK + PS +GG WY++ LD FI+
Sbjct: 158 NKKMYIKASIRPSDRATGGPWYTDQDLDEAFIE 190
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 162 LTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSA-- 219
L++ ++++V +V DN + +K G + V +V ++V G +P S
Sbjct: 301 LSEGDVKKLVDVLVWDNLVEPIKVAGKVGYR---VSRVAKQSVESWAGREDPSGRSGGPE 357
Query: 220 -------SVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
PCG CP + C G + P C Y+ KWL
Sbjct: 358 LYVSPLTEAPCGRCPVFDLCEEGGPVGPSNCEYFKKWL 395
>gi|322707597|gb|EFY99175.1| DNA-directed RNA polymerase III subunit RPC6 [Metarhizium
anisopliae ARSEF 23]
Length = 397
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 35 TDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNK 94
TD + ++Y +I + D GIW++ +++ L N+ D+++ +IK LQ K LI N+ +
Sbjct: 101 TDEQVMVYSLIDDSGGD-GIWSQTLQKRL--NMHDSVLKNAIKQLQTKGLIAPFKNVEHP 157
Query: 95 GKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVK 130
KK + PS +GG WY++ +LD FI+ ++
Sbjct: 158 NKKMYIKASIRPSDRATGGPWYTDQNLDEAFIEELQ 193
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 162 LTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKN------VSKGGGGGEPKT 215
L+++ ++++V +V DN I +K G + V K +N + GG EP
Sbjct: 298 LSEEDVKKLVDVLVWDNLIEPIKIAGRMGYRVSRVAKQSPQNWAGREDPTGRGGDPEPYL 357
Query: 216 GSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
PCG CP C G + P C Y+ +WL
Sbjct: 358 SPYTEAPCGKCPVFELCEEGGPVGPSNCEYFKRWL 392
>gi|50294173|ref|XP_449498.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528812|emb|CAG62474.1| unnamed protein product [Candida glabrata]
Length = 317
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 59/94 (62%), Gaps = 3/94 (3%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+++ E L+Y I S+ ++ GIW++ +K + NL ++V K +KSL+++ +K V ++
Sbjct: 85 TMSAEEALVYSYIESSGRE-GIWSKTIKA--RTNLHQHVVLKCLKSLESQRYVKSVKSVK 141
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
+ +K M +PS +++GG W+++ LD EFI
Sbjct: 142 HPTRKIYMLYHLQPSIEVTGGPWFTDSELDVEFI 175
>gi|340052857|emb|CCC47143.1| conserved hypothetical protein [Trypanosoma vivax Y486]
Length = 368
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 113/281 (40%), Gaps = 66/281 (23%)
Query: 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNI 91
+S+ + L+ D IR++ + GI + K+ LP + V KSI+ L + IKE
Sbjct: 93 NSIPEGPSLVLDAIRASG-NSGIDQAALC--AKIRLPKSEVIKSIQMLLAQKRIKERRCF 149
Query: 92 HNKGKKHLMAVEFEPSKDISGGAWYS---EGSLDTEFIKVVKSQCLKQIIKLKVATLEGI 148
N+ K+ + EFEPS +++GG +Y +D F+ ++ L + + + +LE I
Sbjct: 150 SNRAKRIYLLFEFEPSDEVTGGTFYGGEDSREMDVWFVDEMRRLILAFVAQRRSVSLEEI 209
Query: 149 SDSI-KRSGAFKVD---------------------------------LTKQQIEEIVRAV 174
+ + + + A D ++ + + +V+ +
Sbjct: 210 TRYLCEPTSALASDTAPSDSSIVVVTVSTDGSSATSVGGNNRGTAKRISPRDAQLLVQTL 269
Query: 175 VLDNQI--------------MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSAS 220
VLD + + N FT + G + G G P S AS
Sbjct: 270 VLDGILDCVTLSDTAPAQYQLAFGRNAMRHFTAVSAGSGV--GTASDGAGRVPAHISRAS 327
Query: 221 --------VPCGVCPQINFC--TPDGVISPKTCVYYTKWLD 251
+PC CPQ+ C T GVI+P+ C Y +WL+
Sbjct: 328 AWAMPAVGLPCVGCPQLQVCSATGTGVINPRNCAYLNEWLN 368
>gi|358390496|gb|EHK39901.1| hypothetical protein TRIATDRAFT_295978 [Trichoderma atroviride IMI
206040]
Length = 407
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 35 TDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNK 94
TD + ++Y +I + D GIWT+ +++ L N+ D+++ +IK LQ K LI N+ +
Sbjct: 101 TDEQVMVYSLIDDSGGD-GIWTQTLQKRL--NMHDSVLKNAIKQLQAKGLIAPFKNVEHP 157
Query: 95 GKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIK 127
KK + PS +GG WY++ LD FI+
Sbjct: 158 NKKMYIKASIRPSDRATGGPWYTDQDLDEAFIE 190
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 162 LTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGK------VCYKNVSKGGGGGEPKT 215
L++ ++++V +V DN I V+ G + + K ++ S GG E
Sbjct: 307 LSEGDVKKLVDVLVWDNLIEPVRIAGKVGYRVSRIAKQSVESWAGREDPSGRDGGPELYI 366
Query: 216 GSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
A VPCG CP + C G + P C Y+ KWL
Sbjct: 367 SPLAEVPCGRCPVFDLCEDGGPVGPSNCEYFKKWL 401
>gi|342321651|gb|EGU13583.1| Hypothetical Protein RTG_00013 [Rhodotorula glutinis ATCC 204091]
Length = 581
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
S+ E+L+ D I+ +MGIW+R + K LP V K++K L+ + IK V ++
Sbjct: 98 SMDSEEKLVLDHIK-EAGNMGIWSRTLN--AKTGLPRATVEKALKVLEGRKTIKRVKSVK 154
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVK 130
+K M +PS +++GG W+++ LDTE ++ +K
Sbjct: 155 APTRKIYMLAGIQPSVELTGGPWFTDNELDTELVEQLK 192
>gi|269860596|ref|XP_002650018.1| DNA-directed RNA polymerase III, subunit 14 [Enterocytozoon
bieneusi H348]
gi|220066569|gb|EED44046.1| DNA-directed RNA polymerase III, subunit 14 [Enterocytozoon
bieneusi H348]
Length = 240
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 80/153 (52%), Gaps = 17/153 (11%)
Query: 53 GIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISG 112
G+W +D++ +K N+P N + K +K L+ + LIK V I N KK + + EP K+++G
Sbjct: 83 GLWIKDIR--IKANIPYNFLVKILKKLEQEQLIKSVKGI-NTNKKTYILYDIEPDKEVTG 139
Query: 113 GAWYSEGSLDTEFIK---------VVKSQCLKQ----IIKLK-VATLEGISDSIKRSGAF 158
G W++ +D F+ ++K Q L II L +AT++ I + I S
Sbjct: 140 GIWFTNNDVDLSFVNNLMEIIYQYILKHQALNNNKTDIICLSDLATIDTIYNFIITSNIL 199
Query: 159 KVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEF 191
+V ++K +++ ++ + D +I + N ++
Sbjct: 200 EVKISKNEVKILLETLEYDGRIETINYNTEEKY 232
>gi|422293632|gb|EKU20932.1| DNA-directed RNA polymerase III subunit RPC6 [Nannochloropsis
gaditana CCMP526]
Length = 268
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 94/174 (54%), Gaps = 13/174 (7%)
Query: 25 PDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSL 84
P+ +L + L+Y V+ + GIW +D++ + + P + K +K+L+++ L
Sbjct: 84 PNLAEKMRNLGAEQLLVYQVV-EKAGNKGIWHKDIRSQTSLQQP--ALKKILKNLESRQL 140
Query: 85 IKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIK--LKV 142
+K +I +K +K + + EP+K+I+GG WY+E D EFI+ + S+ + IK K
Sbjct: 141 VKSTSSISSKTRKLYLLYDLEPAKEITGGPWYTEHEFDHEFIEEL-SRAIYHFIKQQRKP 199
Query: 143 ATLEGISDSIKRSGAFK-------VDLTKQQIEEIVRAVVLDNQIMEVKSNGSG 189
+L I+D ++ SG K V+L +++ I+ ++ D +I V+++ G
Sbjct: 200 PSLGIIADYVRNSGVSKVKSEIKNVELAPGEVQLIINSLAYDMKIEPVQNSLVG 253
>gi|367019296|ref|XP_003658933.1| hypothetical protein MYCTH_2295366 [Myceliophthora thermophila ATCC
42464]
gi|347006200|gb|AEO53688.1| hypothetical protein MYCTH_2295366 [Myceliophthora thermophila ATCC
42464]
Length = 425
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 7 DLYLLGLA-KGSGMSKRKRPDSNAPSDSL--TDHERLIYDVIRSNKQDMGIWTRDMKREL 63
D L+G+ +GM+ R R A + D ++Y +I D GIW R +K
Sbjct: 63 DKLLVGITNHHAGMAWRWRSREEAKKYTTLPNDETVMVYSIIDEAGAD-GIWNRTIKN-- 119
Query: 64 KVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDT 123
K+N+ + +V IK L++K I + N+ + KK + PS+ +GG W++EG LDT
Sbjct: 120 KLNMHEAVVKNCIKFLESKGYIASMKNVEHPNKKMYIKANLRPSERATGGPWFTEGELDT 179
Query: 124 EFI 126
FI
Sbjct: 180 AFI 182
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 210 GGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
G EP + PCG CP + C G +SP CVY+ +WL+
Sbjct: 367 GAEPLSNGLTEAPCGRCPVFDLCEEGGPVSPSNCVYFLQWLEL 409
>gi|336275631|ref|XP_003352569.1| hypothetical protein SMAC_01403 [Sordaria macrospora k-hell]
gi|380094459|emb|CCC07838.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 411
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 13/123 (10%)
Query: 10 LLGLAKGSGMSKRKRPDSNA------PSDSLTDHERLIYDVIRSNKQDMGIWTRDMKREL 63
+G SG+S R R +A P+ L ++Y ++ D GIW R +K
Sbjct: 60 FVGNTTASGLSWRWRSREDAKKYTSLPNSDLM----MVYAMVDEAGAD-GIWNRTIKN-- 112
Query: 64 KVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDT 123
K+N+ D+++ + IK L+ K I + N+ + KK + PS +GG W++EG LDT
Sbjct: 113 KLNMADSLMKQCIKYLEQKGYIASMKNVEHPNKKMYIKANLRPSDRATGGPWFTEGELDT 172
Query: 124 EFI 126
FI
Sbjct: 173 AFI 175
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 15/123 (12%)
Query: 144 TLEGISDSIKRSG-AFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEF--TNIPV--GK 198
T+ I+ I +G L++ I+++V + D + VK NG + T IP +
Sbjct: 278 TVSDIAKFIHHAGITNNTTLSEADIQQLVDVLYYDGLVEPVKVNGRKGYRVTRIPKQDTR 337
Query: 199 VCYK-----NVSKGG-----GGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTK 248
C + + SKGG G EP PCG CP + C G +SP CVY+ +
Sbjct: 338 TCNQRRLDHDPSKGGIITSFMGVEPSASGLMEAPCGRCPVYDMCEEGGPVSPSNCVYFRQ 397
Query: 249 WLD 251
WLD
Sbjct: 398 WLD 400
>gi|444317567|ref|XP_004179441.1| hypothetical protein TBLA_0C01070 [Tetrapisispora blattae CBS 6284]
gi|387512482|emb|CCH59922.1| hypothetical protein TBLA_0C01070 [Tetrapisispora blattae CBS 6284]
Length = 334
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 58/94 (61%), Gaps = 3/94 (3%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+++ E L+Y I ++ ++ GIW++ +K + NL +IV K +KSL+++ +K V ++
Sbjct: 84 TMSAEESLVYSYIEASGRE-GIWSKTIKA--RTNLHQHIVLKCLKSLESQRYVKSVKSVK 140
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
+K M +PS D++GG W+++ LD EFI
Sbjct: 141 FPTRKIYMLYNLQPSTDVTGGPWFTDSELDVEFI 174
>gi|322696633|gb|EFY88422.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Metarhizium acridum CQMa 102]
Length = 395
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 35 TDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNK 94
TD + ++Y +I + D GIW++ +++ L N+ D+++ +IK LQ K LI N+ +
Sbjct: 101 TDEQVMVYSLIDDSGGD-GIWSQTLQKRL--NMHDSVLKNAIKQLQAKGLIAPFKNVEHP 157
Query: 95 GKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVK 130
KK + PS +GG WY++ +LD FI+ ++
Sbjct: 158 NKKMYIKASIRPSDRATGGPWYTDQNLDEAFIEELQ 193
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 162 LTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKN------VSKGGGGGEPKT 215
L+++ ++++V +V DN I +K G + V K +N + GG EP
Sbjct: 296 LSEEDVKKLVDVLVWDNLIEPIKIAGRMGYRVCRVAKQSPQNWAGREDPTGRGGDPEPYL 355
Query: 216 GSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
PCG CP C G + P C Y+ +WL
Sbjct: 356 SPYTEAPCGKCPVFELCEEGGPVGPSNCEYFKRWL 390
>gi|156841355|ref|XP_001644051.1| hypothetical protein Kpol_1014p11 [Vanderwaltozyma polyspora DSM
70294]
gi|156114685|gb|EDO16193.1| hypothetical protein Kpol_1014p11 [Vanderwaltozyma polyspora DSM
70294]
Length = 321
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 58/94 (61%), Gaps = 3/94 (3%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+++ E L+Y I ++ ++ GIWT+ +K + NL ++V K +KSL+++ +K V ++
Sbjct: 87 TMSAEEALVYSHIEASGRE-GIWTKTIKA--RTNLHQHVVLKCLKSLESQRYVKSVKSVK 143
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
+K M +PS D++GG W+++ LD EFI
Sbjct: 144 YPTRKIYMLYNLQPSIDVTGGPWFTDSELDVEFI 177
>gi|82793544|ref|XP_728084.1| DNA-directed RNA polymerase III 34 kDa polypeptide [Plasmodium
yoelii yoelii 17XNL]
gi|23484251|gb|EAA19649.1| probable DNA-directed RNA polymerase iii 34 kDa polypeptide
[Plasmodium yoelii yoelii]
Length = 299
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 106/247 (42%), Gaps = 32/247 (12%)
Query: 19 MSKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELK--------VNLPDN 70
++K + + L+D + LI+ + N Q GIWT D++++ K ++ P
Sbjct: 68 ITKMRTEEVTKKLKELSDIDFLIFTKV-ENSQSNGIWTADLRKQTKLLVSKKKYISXPPR 126
Query: 71 IVTKSIKSLQNKS----LIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
I T I S+ NK +V NIH K +K + + E S+ + GG++Y +G + + +
Sbjct: 127 IYT--IFSIANKCCMFFFFFQVNNIHVKNRKMYILYDIEASEKVIGGSFYKDGEFNKKVV 184
Query: 127 KVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSN 186
++ + + + + + IK+ + I +++ ++ + +I K+N
Sbjct: 185 DYIRENICFYLYNNNNSNVTSVINYIKKLNNSVGYFSDNDIYRVIKTLLFEERIKIYKNN 244
Query: 187 GSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPD--GVISPKTCV 244
+ E + Y N K + PC C N C D I+PKTC+
Sbjct: 245 DNEEL-------IYYYNNEKKKILNQ--------FPCFSCDIFNKCNFDTKTTINPKTCL 289
Query: 245 YYTKWLD 251
Y +L+
Sbjct: 290 YLNVYLN 296
>gi|358058137|dbj|GAA96023.1| hypothetical protein E5Q_02683 [Mixia osmundae IAM 14324]
Length = 595
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 56/97 (57%), Gaps = 3/97 (3%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
S+ +L+YD IR+ ++GIWT+ +K K NL ++++ +K L+ +K V ++
Sbjct: 142 SMPVENKLVYDTIRA-AGNVGIWTKTLK--TKTNLHQTVISRVLKQLEKDKQVKCVKSVK 198
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVV 129
++ M E PS ++SGG W+ + LD +FI ++
Sbjct: 199 TPTRRIYMLAELTPSAELSGGPWFHDNELDLDFINML 235
>gi|300708286|ref|XP_002996325.1| hypothetical protein NCER_100585 [Nosema ceranae BRL01]
gi|239605618|gb|EEQ82654.1| hypothetical protein NCER_100585 [Nosema ceranae BRL01]
Length = 233
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 73/124 (58%), Gaps = 7/124 (5%)
Query: 9 YLLGLAKGSGMSKRKRPDS---NAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKV 65
YL GL K + ++ K ++ A ++ D+E LI ++I + + G+W ++++ K
Sbjct: 35 YLNGLIKSNNITVYKNGNTIFYKAVVNASDDYETLIINLIAQSGTE-GMWIKEIRE--KT 91
Query: 66 NLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEF 125
N+P N++ K + S++N+ +IK + NI N K +++ + PS I+GG W+++ +D E
Sbjct: 92 NMPQNLILKILSSMENRRVIKSIKNIKNNRKVYVLY-DIIPSDAITGGFWFNDNEVDVEC 150
Query: 126 IKVV 129
+K V
Sbjct: 151 VKNV 154
>gi|46107790|ref|XP_380954.1| hypothetical protein FG00778.1 [Gibberella zeae PH-1]
Length = 383
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 35 TDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNK 94
TD + ++Y +I + D GIW++ +++ L N+ D+++ ++K LQ K LI N+ +
Sbjct: 95 TDEQVMVYSLIDDSGGD-GIWSQTLQKRL--NMHDSVLKNALKQLQTKGLIAPFKNVEHP 151
Query: 95 GKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
KK + PS +GG WY++ +LD FI
Sbjct: 152 NKKMFIKASIRPSDRATGGPWYTDQNLDEAFI 183
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 162 LTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVS----KGGGGGEPKTGS 217
L++ ++++V +V DN + VK G + V K ++ + G G P++
Sbjct: 286 LSEHDVQKLVDVLVWDNLVESVKVAGKIGYRVSRVAKQSLESWAGRDDPTGREGGPESFV 345
Query: 218 SA--SVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
SA PCG CP C G + P C Y+ +WL
Sbjct: 346 SAFTEAPCGRCPVFEICEEGGPVGPSNCEYFKRWL 380
>gi|302927723|ref|XP_003054557.1| hypothetical protein NECHADRAFT_75405 [Nectria haematococca mpVI
77-13-4]
gi|256735498|gb|EEU48844.1| hypothetical protein NECHADRAFT_75405 [Nectria haematococca mpVI
77-13-4]
Length = 352
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 35 TDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNK 94
TD + ++Y +I + D GIW++ +++ L N+ D+++ ++K LQ K LI N+ +
Sbjct: 92 TDEQVMVYSLIDDSGGD-GIWSQTLQKRL--NMHDSVLKNALKQLQTKGLIAPFKNVEHP 148
Query: 95 GKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVK 130
KK + PS +GG WY++ +LD FI+ ++
Sbjct: 149 NKKMFIKASIRPSDRATGGPWYTDQNLDEAFIEELQ 184
>gi|255720276|ref|XP_002556418.1| KLTH0H12738p [Lachancea thermotolerans]
gi|238942384|emb|CAR30556.1| KLTH0H12738p [Lachancea thermotolerans CBS 6340]
Length = 310
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 58/94 (61%), Gaps = 3/94 (3%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
++T E L+Y I ++ ++ GIWT+ +K + NL +V+K +KSL+++ +K V ++
Sbjct: 85 AMTADEALVYSYIEASGRE-GIWTKTIKA--RTNLHTVVVSKCLKSLESQRYVKSVKSVK 141
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
+K M +PS +++GG W+++ LD EFI
Sbjct: 142 FPTRKIYMLYNLQPSIEVTGGPWFTDSELDVEFI 175
>gi|408391211|gb|EKJ70592.1| hypothetical protein FPSE_09237 [Fusarium pseudograminearum CS3096]
Length = 383
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 35 TDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNK 94
TD + ++Y +I + D GIW++ +++ L N+ D+++ ++K LQ K LI N+ +
Sbjct: 95 TDEQVMVYSLIDDSGGD-GIWSQTLQKRL--NMHDSVLKNALKQLQAKGLIAPFKNVEHP 151
Query: 95 GKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
KK + PS +GG WY++ +LD FI
Sbjct: 152 NKKMFIKASIRPSDRATGGPWYTDQNLDEAFI 183
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 162 LTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVS----KGGGGGEPKTGS 217
L++ ++++V +V DN + VK G F V K ++ + G G P++
Sbjct: 286 LSEHDVQKLVDVLVWDNLVESVKVAGKIGFRVSRVAKQSLESWAGRDDPTGREGGPESFV 345
Query: 218 SA--SVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
SA PCG CP C G + P C Y+ +WL
Sbjct: 346 SAFTEAPCGRCPVFEICEEGGPVGPSNCEYFKRWL 380
>gi|361124834|gb|EHK96901.1| putative DNA-directed RNA polymerase III subunit rpc6 [Glarea
lozoyensis 74030]
Length = 393
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 62/113 (54%), Gaps = 4/113 (3%)
Query: 18 GMSKRKRPDSNAPS-DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSI 76
G+ R R + A L+ + L+Y +I ++ + GIW + +K L NL + +T +
Sbjct: 102 GLGFRVRSEDEAKVFRGLSADQELVYGLIDESEAE-GIWHKTIKARL--NLHETALTLCL 158
Query: 77 KSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVV 129
K LQ K L+ E+ ++ N +K + PS+ +GG+WY++G LD FI+ +
Sbjct: 159 KQLQQKGLVGEMKSVQNPSRKMWIKAHLRPSERATGGSWYTDGELDEVFIQQI 211
>gi|324511218|gb|ADY44675.1| DNA-directed RNA polymerase III subunit RPC6 [Ascaris suum]
Length = 183
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 59/102 (57%), Gaps = 6/102 (5%)
Query: 37 HERLIYDVIR-SNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKG 95
E+LIY +I SNK MGIW R+++ + LP V K++K L+ + L+K V +
Sbjct: 83 EEQLIYSLIEESNK--MGIWIREIRS--RTGLPQAQVRKALKVLEQRKLVKSVKAV-GTS 137
Query: 96 KKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQI 137
KK M E + ++GGA+YSE LD++F++ + C+ +
Sbjct: 138 KKCYMLYSVEADESLTGGAFYSEQQLDSQFVQTLVHLCVSML 179
>gi|403418720|emb|CCM05420.1| predicted protein [Fibroporia radiculosa]
Length = 494
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 64 KVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDT 123
K L ++ + +KSL K LIK V ++ +K M +PS +++GG WY++ LDT
Sbjct: 105 KTELHQTVIDRCLKSLVQKQLIKAVKSVKYPTRKIYMLYHLDPSVEMTGGPWYTDNELDT 164
Query: 124 EFIKVVKSQCLKQI 137
EFIK++ S CL+ I
Sbjct: 165 EFIKLLCSACLRFI 178
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 219 ASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
+ PC CP +FC + ++PK CVYY +WL
Sbjct: 455 SQAPCTRCPTFDFCKSNAPVNPKECVYYGEWL 486
>gi|299749618|ref|XP_001836233.2| hypothetical protein CC1G_06318 [Coprinopsis cinerea okayama7#130]
gi|298408519|gb|EAU85605.2| hypothetical protein CC1G_06318 [Coprinopsis cinerea okayama7#130]
Length = 207
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 51 DMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVV-NIHNKGKKHLMAVEFEPSKD 109
D G+ +R ++ L + KS+K+L N+ LIK + ++HN ++ + + EP +
Sbjct: 96 DQGMSSRKLRTS--TGLHKAAMEKSVKTLVNRKLIKVIKGSLHNTRQRTFILYDLEPGVE 153
Query: 110 ISGGAWYSEGSLDTEFIKVVKSQCLKQII 138
I+GG+WY++ +D EFI VKS CL+ I+
Sbjct: 154 ITGGSWYTDKKIDVEFIDQVKSFCLRYIV 182
>gi|342883338|gb|EGU83852.1| hypothetical protein FOXB_05634 [Fusarium oxysporum Fo5176]
Length = 383
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 35 TDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNK 94
TD + ++Y +I + D GIW++ +++ L N+ D+++ ++K LQ K LI N+ +
Sbjct: 95 TDEQVMVYSLIDDSGGD-GIWSQTLQKRL--NMHDSVLKNALKQLQTKGLIAPFKNVEHP 151
Query: 95 GKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIK 127
KK + PS +GG WY++ + D FI+
Sbjct: 152 NKKMFIKASIRPSDRATGGPWYTDQNFDEAFIE 184
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 162 LTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYK------NVSKGGGGGEPKT 215
L++ ++++V +V DN I VK G + + K + + + GG EP
Sbjct: 286 LSEHDVQKLVDVLVWDNLIESVKVAGKIGYRVSRIAKQSLESWAGRDDPTGREGGPEPIV 345
Query: 216 GSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
+ PCG CP C G + P C Y+ +WL
Sbjct: 346 SAFTEAPCGRCPVFEICEEGGPVGPNNCEYFKRWL 380
>gi|452845009|gb|EME46943.1| hypothetical protein DOTSEDRAFT_70771 [Dothistroma septosporum
NZE10]
Length = 378
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 18 GMSKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIK 77
G S R R D+ L E+ +Y+ I + D G+W RD+K+ K N+ D+ + K+I
Sbjct: 72 GWSVRPR-DAARQIKGLDRDEKAVYEEIEAAHTD-GVWVRDIKK--KTNIGDSGMKKAIS 127
Query: 78 SLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEF 125
L+ +LIK + NI +K +K + +PS+ ++G ++Y G LD F
Sbjct: 128 KLEGTNLIKSITNIRSKAQKTYILSHLKPSESVTGNSFYDAGDLDESF 175
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 162 LTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSAS- 220
LT Q+I+ + + D ++ +V + GE+ V + +K G + G++ +
Sbjct: 286 LTVQEIQGCIDVLCWDEKLEKVPTR-DGEWGYRTVRGITFKPPGSQYGDFDDNAGTALTQ 344
Query: 221 VPCGVCPQINFCTPDGVISPKTCVYYTKWLD 251
PCG CP + C G ++P+ CVY+T+WLD
Sbjct: 345 APCGKCPVFDLCHEGGPVNPQECVYFTQWLD 375
>gi|440632371|gb|ELR02290.1| hypothetical protein GMDG_05359 [Geomyces destructans 20631-21]
Length = 333
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 100/243 (41%), Gaps = 51/243 (20%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
LT + ++Y +I + + GIW++ +K K L ++++ ++K+L+ K LI ++ ++ +
Sbjct: 89 LTHEQEMVYSLIDESSTE-GIWSKTIKN--KTALHESLMRSALKALETKRLISDMKSVEH 145
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI-----------------KVVKSQCLKQ 136
+K + PS+ +GGAWY++ LD FI + + LK+
Sbjct: 146 PTRKMYIKSTLRPSEKATGGAWYTDNELDEAFIEGLTGVLYKYIEARSFYRSTSRRPLKR 205
Query: 137 I--------------IKL--------KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAV 174
I I L +L ++ I+ S L+ I ++ +
Sbjct: 206 IAGRPTPKPAQGGDTITLLPLPPTYRGYPSLAELTLFIESSPITSTTLSADDISALLDVL 265
Query: 175 VLDNQIMEVKSNGSG-EFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCT 233
V D +I +V + G F + V + V +G G E PCG CP C
Sbjct: 266 VYDRRIEQVVAGPEGVAFKAVRKAIVGEEAVERGNGLTE--------APCGRCPVFELCE 317
Query: 234 PDG 236
G
Sbjct: 318 EGG 320
>gi|346325877|gb|EGX95473.1| DNA-directed RNA polymerase III subunit Rpc34 [Cordyceps militaris
CM01]
Length = 383
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 35 TDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNK 94
TD + L+Y ++ D GIW++ +++ L N+ D+++ ++K LQ K LI N+ +
Sbjct: 95 TDEQVLVYSLVDDAGGD-GIWSQTLQKRL--NMHDSVLKNALKQLQTKGLIAPFKNVEHP 151
Query: 95 GKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVK 130
KK + PS +GG WY++ + D FI+ ++
Sbjct: 152 NKKMYIKASIRPSDRATGGPWYTDQNFDDAFIEELQ 187
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 162 LTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGG-----GGEPKTG 216
L++ + +++ +V DN I V+ G + V +V ++ G G EP T
Sbjct: 288 LSEDDVRKLIDVLVWDNLIEPVRVAGKIGYR---VARVVKQSTEPWAGREEPGGPEPYTS 344
Query: 217 SSASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
PCG CP + C G + P C Y+ WL
Sbjct: 345 PYTEAPCGRCPVFDLCEDGGPVGPSNCEYFKTWL 378
>gi|400602056|gb|EJP69681.1| RNA polymerase Rpc34 subunit [Beauveria bassiana ARSEF 2860]
Length = 383
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 35 TDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNK 94
TD + L+Y ++ D GIW++ +++ L N+ D+++ ++K LQ K LI N+ +
Sbjct: 95 TDEQVLVYSLVDDAGGD-GIWSQTLQKRL--NMHDSVLKNALKQLQTKGLIAPFKNVEHP 151
Query: 95 GKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVK 130
KK + PS +GG WY++ + D FI+ ++
Sbjct: 152 NKKMYIKASIRPSDRATGGPWYTDQNFDDAFIEELQ 187
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 162 LTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGG-----GGEPKTG 216
L+++ + +++ +V DN I V+ G + V +V ++ G G EP T
Sbjct: 288 LSEEDVRKLIDVLVWDNLIEPVRVAGKVGYR---VARVARQSTEPWAGREDPTGPEPYTS 344
Query: 217 SSASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
PCG CP + C G + P C Y+ WL
Sbjct: 345 PYTEAPCGRCPVFDICEDGGPVGPSNCEYFKTWL 378
>gi|167533399|ref|XP_001748379.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773191|gb|EDQ86834.1| predicted protein [Monosiga brevicollis MX1]
Length = 412
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 94/211 (44%), Gaps = 40/211 (18%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
L+ E+LIY +I + G++ +D+K K +L + K IK L+++ IKE +I +
Sbjct: 125 LSTQEQLIYGII-EDAGTKGVFHQDLKP--KSHLDPRTINKIIKRLKSEKYIKEASSIKS 181
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQI--------------IK 139
K+ + E E + SGG WY+ D +F+ +++ C+KQ+ +
Sbjct: 182 GKKRLYILAELEVDTEHSGGPWYAGQDFDGQFVDIMRRICIKQLQERLNRPYDSPLHKYQ 241
Query: 140 LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSG----EFTNIP 195
T + I D I S + DL+ +E+++ +V D M ++ +G T IP
Sbjct: 242 SSWLTAQEILDFIANSKIAQQDLSVGDMEKLLETLVYDR--MAIRGTRAGRRAYRLTKIP 299
Query: 196 VGKVCYKNVSKGGGGGEPKTGSSASVPCGVC 226
+ P++ + PCG C
Sbjct: 300 L----------------PRSAVH-TAPCGHC 313
>gi|303390946|ref|XP_003073703.1| DNA-directed RNA polymerase III subunit C34 [Encephalitozoon
intestinalis ATCC 50506]
gi|303302851|gb|ADM12343.1| DNA-directed RNA polymerase III subunit C34 [Encephalitozoon
intestinalis ATCC 50506]
Length = 235
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 93/178 (52%), Gaps = 16/178 (8%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
++ D+E +IY+++ + + G+W + +K K N+P N+V K +++++ K +IK V +
Sbjct: 62 NVDDYELMIYNLVNQSGSE-GVWLKVIKD--KTNMPHNLVGKVLRNMETKRIIKSVKCLK 118
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIK-----LKVAT--- 144
N K +++ + PS++I+GG W+ + +D E + + L + K L++
Sbjct: 119 NNRKVYVLYDQV-PSEEITGGMWFQDNDVDVECVTKILEIILLFLEKRLGDRLELPEYEE 177
Query: 145 ---LEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNI-PVGK 198
LE I + +K G V L + +E +V +V D ++ ++ S + + P GK
Sbjct: 178 NPKLEEIMNYVKDLGILSVPLRLEDLETLVDILVFDGRVEKLHSGPIVRYRALRPYGK 235
>gi|396082216|gb|AFN83826.1| DNA-directed RNA polymerase III subunit C34 [Encephalitozoon
romaleae SJ-2008]
Length = 235
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 89/181 (49%), Gaps = 25/181 (13%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
++ D+E IY+++ S + G+W + +K K N+P N++ K ++S+++K +IK V +
Sbjct: 62 NIDDYELTIYNLV-SQSGNEGVWLKVIKD--KTNMPHNLIGKVLRSMESKRIIKSVKCLK 118
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVA--------- 143
N K +++ E PS++I+GG W+ + +D E + V +II+L +
Sbjct: 119 NNRKVYVLYDEV-PSEEITGGIWFQDNDVDAECVTRV-----LEIIQLFLEKRLNGNLEL 172
Query: 144 -------TLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPV 196
LE I +K V L + +E +V +V D ++ ++ S + +
Sbjct: 173 PEYEDNPALEEIMSYVKNLNILSVPLRAEDLETLVDILVFDGKVEKLHSGSVTRYRALRQ 232
Query: 197 G 197
G
Sbjct: 233 G 233
>gi|378730779|gb|EHY57238.1| DNA-directed RNA polymerase III subunit C34 [Exophiala dermatitidis
NIH/UT8656]
Length = 453
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
LT E+++ ++ + G+WT+ +K + +L ++ + KSL+ K LIK + ++ N
Sbjct: 99 LTRDEKIVLFIVDAAGT-AGVWTKTIK--FRSSLHGRVLDRVYKSLETKGLIKPMKHVKN 155
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVV 129
G+K + EPS++ SGGAW+S+G LD + +
Sbjct: 156 PGRKMYILSGLEPSEEASGGAWFSDGRLDIGLVDTI 191
>gi|453086184|gb|EMF14226.1| RNA polymerase Rpc34 [Mycosphaerella populorum SO2202]
Length = 396
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 15 KGSGMSKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTK 74
+G G S R R + A +L ER++Y+VI ++ GIW + +K +L + +V K
Sbjct: 76 RGLGWSVRPREAAKA-IKALDKDERMVYEVIEAS-HTTGIWLKSIKNKLN-GIAQPVVAK 132
Query: 75 SIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEF 125
K+L+++ LIK V +I ++ M PS+D++G +++ G LD F
Sbjct: 133 ITKTLESQRLIKPVKSIKAPAQRVFMLFHLVPSEDVTGNSFFDAGDLDESF 183
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 149 SDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGG 208
SD+IK + + LT Q+++ + +V D+++ +V + G + V ++ +
Sbjct: 294 SDAIKATKS--ASLTVQEVQGCLDVLVWDDKLEKVWNVEDGNWGYRTRRGVTFRQPGQTF 351
Query: 209 GGGEPKTGSSAS-VPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
E G+ + PCG CP + C G ++P+TCVY+ WL
Sbjct: 352 DIEEDAVGTGLTQAPCGRCPVFDVCRDGGPVNPQTCVYFDAWL 394
>gi|389631391|ref|XP_003713348.1| DNA-directed RNA polymerase III subunit RPC6 [Magnaporthe oryzae
70-15]
gi|351645681|gb|EHA53541.1| DNA-directed RNA polymerase III subunit RPC6 [Magnaporthe oryzae
70-15]
gi|440474129|gb|ELQ42893.1| DNA-directed RNA polymerase III subunit RPC6 [Magnaporthe oryzae
Y34]
gi|440487009|gb|ELQ66821.1| DNA-directed RNA polymerase III subunit RPC6 [Magnaporthe oryzae
P131]
Length = 415
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 67/130 (51%), Gaps = 4/130 (3%)
Query: 22 RKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQN 81
R R D+ + + L+Y +I D GIW+R + R L ++ D + +++K L++
Sbjct: 86 RTREDAAKYATLPSSEAMLVYTLIDEAGAD-GIWSRAILRRLGMH--DATLKQALKQLES 142
Query: 82 KSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLK 141
K I E+ ++ + KK + PS+ +GG WY++ +LD FI ++ + + I+K +
Sbjct: 143 KGFISEMKSVEHPNKKMYIKANLRPSEKATGGPWYNDSTLDEAFIDELE-RVVFDIVKAR 201
Query: 142 VATLEGISDS 151
SDS
Sbjct: 202 STYRSHASDS 211
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 221 VPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
PCG CP C G +SP+TC+YY KWL
Sbjct: 368 APCGRCPVFELCEEGGPVSPRTCIYYNKWL 397
>gi|429856918|gb|ELA31807.1| DNA-directed RNA polymerase iii subunit rpc6 [Colletotrichum
gloeosporioides Nara gc5]
Length = 389
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 64/131 (48%), Gaps = 13/131 (9%)
Query: 7 DLYLLGLAKGSGMSKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVN 66
D L+ ++ +G++ R R S+ D E + RS KQ R K + ++N
Sbjct: 71 DRLLIAVSSQTGLAWRWR--------SVEDAEN-AWSTARSTKQA----ARPKKTQHRLN 117
Query: 67 LPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
+ D+++ ++K LQ K LI N+ + K+ + PS+ +GG W+++ + D FI
Sbjct: 118 MHDSVLKTALKQLQGKGLIAPFKNVEHPNKRMFIKASMRPSERATGGPWFTDSAFDEAFI 177
Query: 127 KVVKSQCLKQI 137
+ ++ QI
Sbjct: 178 EDLQRVIFDQI 188
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 18/101 (17%)
Query: 162 LTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVC---------YKNVSKGG---G 209
L ++ +++++ +V D + V+ G + +VC + +GG G
Sbjct: 292 LGEEDVQKLIDVLVFDGLVEPVRVAGRTGY------RVCRAPRQSLQGWAGRQEGGADEG 345
Query: 210 GGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
G EP PCG CP C G +S CVY+ +WL
Sbjct: 346 GPEPHVNGFTEAPCGRCPVFELCEEGGPVSASNCVYFQRWL 386
>gi|402083524|gb|EJT78542.1| DNA-directed RNA polymerase III subunit RPC6 [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 413
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 15 KGSGMSKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTK 74
KG R R D+ + + L+Y +I D GIW+R + R L ++ D + +
Sbjct: 78 KGLCWKYRTREDAQKYINLPSSDAVLVYSIIDEAGAD-GIWSRAVLRRLGMH--DATLKQ 134
Query: 75 SIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
++K L++K I E+ ++ + KK + +PS+ +GG WY++ +LD FI
Sbjct: 135 ALKQLESKGFISEMKSVEHPNKKMYIKANLKPSEKATGGPWYNDSTLDEAFI 186
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 221 VPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
PCG CP C G +SP+TC+YY +WL
Sbjct: 371 APCGNCPVFELCEEGGPVSPRTCIYYNRWL 400
>gi|406865342|gb|EKD18384.1| DNA-directed RNA polymerase III subunit RPC6 [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 358
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93
LT + ++Y I D G W++ +K + NL D++ +IK L+ ++LI E+ ++ +
Sbjct: 91 LTAEQEIVYMQIDEAAAD-GAWSKIIKN--RSNLHDSLFQSAIKHLRARNLITEMKSVEH 147
Query: 94 KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQI 137
+K + PS+ +GG WY++ LD EFI V + I
Sbjct: 148 PTRKMFILSSLRPSERTTGGPWYTDSELDEEFINTVMRVLFEHI 191
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 10/107 (9%)
Query: 144 TLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKN 203
TL ++ ++ AF L I++++ + D++I V S G G V YK
Sbjct: 260 TLAELTLWVENMNAFSQTLAANDIQQLLDIMCFDDRITRVIS-GEG---------VSYKA 309
Query: 204 VSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
+ + E T VPCG CP + C G + P C Y+ WL
Sbjct: 310 LRRSLRDEEECTSRLTEVPCGRCPVFDLCEEGGPVGPSNCEYFNDWL 356
>gi|72387117|ref|XP_843983.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62175983|gb|AAX70106.1| hypothetical protein, conserved [Trypanosoma brucei]
gi|70800515|gb|AAZ10424.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|261327110|emb|CBH10086.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 355
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/290 (20%), Positives = 113/290 (38%), Gaps = 78/290 (26%)
Query: 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNI 91
+S+ + L+ D IR++ GI + L+ LP + KS++ L ++ IKE
Sbjct: 72 NSMPEGPSLVLDAIRASGNS-GIDQAALCSSLR--LPKGEIIKSLQMLLSQKRIKERRCF 128
Query: 92 HNKGKKHLMAVEFEPSKDISGGAWYS---EGSLDTEFIKVVKSQCLKQIIKLKVATLEGI 148
N+ K+ + EFEPS +++GG +Y +D F+ ++ + + + + +LE I
Sbjct: 129 SNRAKRIYLLFEFEPSDEVTGGTFYGGEDSREMDIGFVDEMRRRIMLLVAQRHSVSLEQI 188
Query: 149 SDSIK--RSGAFKVD-------------------------------------------LT 163
+ ++ R G+ D ++
Sbjct: 189 TQHLQEARGGSSSADVNATAGGTVVMTTSPNGTVATLLGDSTGSCSGGGSVGAGCVKRIS 248
Query: 164 KQQIEEIVRAVVLDNQI--------------MEVKSNGSGEFTNIPVG-------KVCYK 202
++ + +V+ +VLD + + N F+ +P K
Sbjct: 249 QRDAQLLVQTLVLDGLLDCVTPSPAVPAQYQLATGRNVMRHFSAVPTAAGAGSGTKWVPA 308
Query: 203 NVSKGGGGGEPKTGSSASVPCGVCPQINFCTP--DGVISPKTCVYYTKWL 250
VS+ P G +PC C Q++ CT +GV++P+ C Y +W+
Sbjct: 309 PVSQPSAWAMPAVG----LPCMGCAQLHVCTASGNGVVNPRNCAYLKEWM 354
>gi|429961896|gb|ELA41440.1| hypothetical protein VICG_01545 [Vittaforma corneae ATCC 50505]
Length = 236
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 81/163 (49%), Gaps = 14/163 (8%)
Query: 35 TDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNK 94
+ +E L+ ++I + G+W +D+K K N+P N++ K ++ L+ IK + ++ N
Sbjct: 64 SSYEALVLNLIAQSGSS-GLWLKDIKN--KTNIPHNLILKILRVLEETRRIKSIKSVKNN 120
Query: 95 GKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLK----------VAT 144
K +++ + +P +DISGG W+S +D F+ + + + K + +
Sbjct: 121 RKIYVL-FDIKPDEDISGGVWFSNNDVDLVFVNKLMEIIYQYVRKPEGPFVLNKVDNLVK 179
Query: 145 LEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNG 187
L + + I SG +V LT + ++ +V D +I ++ G
Sbjct: 180 LRMVREFISTSGISEVVLTVDDVNTLIDCLVYDGKIERIEVGG 222
>gi|300123760|emb|CBK25032.2| unnamed protein product [Blastocystis hominis]
Length = 170
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNI 91
+ L + + ++Y I + D GIW RD+K ++ +L + + ++I+ + + LIK +I
Sbjct: 56 EKLGEQDMIVYQCIEAAG-DQGIWIRDIK--VQTSLHASAINRAIEKMVKRKLIKSFKSI 112
Query: 92 HNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+K K + + E KDI+GG WY E D EFI V+ +
Sbjct: 113 ASKMKIMYILYDKELPKDITGGPWYVEQEFDLEFINVMST 152
>gi|19074630|ref|NP_586136.1| DNA-DIRECTED RNA POLYMERASE III 34kDa SUBUNIT [Encephalitozoon
cuniculi GB-M1]
gi|19069272|emb|CAD25740.1| DNA-DIRECTED RNA POLYMERASE III 34kDa SUBUNIT [Encephalitozoon
cuniculi GB-M1]
gi|449330226|gb|AGE96487.1| DNA-directed RNA polymerase III 34kDa subunit [Encephalitozoon
cuniculi]
Length = 236
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 86/165 (52%), Gaps = 17/165 (10%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
++ D+E IY+++ S G+W + +K K N+P N+V K ++S+++K +IK V +
Sbjct: 63 NVDDYELTIYNLV-SQSGGEGVWLKVIKD--KTNMPHNLVGKVLRSMESKRIIKSVKCLK 119
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVA--------- 143
N K +++ + PS++I+GG W+ + +D E + + + ++ ++ +A
Sbjct: 120 NNRKVYVLYDQV-PSEEITGGTWFHDNDVDVECVARI-LEIIELFLEKNLAGREELPKYE 177
Query: 144 ---TLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185
TLE I + ++ + L +E + +V D ++ ++ S
Sbjct: 178 DNPTLEDIMNYVRNVNILSIPLRLDDLETLADILVFDGKVEKLHS 222
>gi|401827607|ref|XP_003888096.1| DNA-directed RNA polymerase III subunit C34 [Encephalitozoon hellem
ATCC 50504]
gi|392999296|gb|AFM99115.1| DNA-directed RNA polymerase III subunit C34 [Encephalitozoon hellem
ATCC 50504]
Length = 236
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 92/176 (52%), Gaps = 27/176 (15%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
++ ++E IY+++ S + G+W + +K K N+P N++ K ++++++K +IK V +
Sbjct: 63 NVDNYELTIYNLV-SQSGNEGVWLKVIKD--KTNMPHNLIGKVLRTMESKRIIKSVKCLK 119
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTE-FIKVVKSQCLKQIIKLKVA-------- 143
N K +++ + PS++I+GG W+ + +D E I+V+ +II+L +
Sbjct: 120 NNRKVYVLYDQV-PSEEITGGMWFQDNDVDAECVIRVL------EIIQLFLQKSLSGKPG 172
Query: 144 --------TLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEF 191
TLE I + +K V L + ++ +V +V D ++ ++ S + +
Sbjct: 173 LPEYEDNPTLEEIMNYVKNLNILSVPLRIEDLKTLVDILVFDGKVEKLHSGATTRY 228
>gi|387592799|gb|EIJ87823.1| hypothetical protein NEQG_01895 [Nematocida parisii ERTm3]
gi|387595420|gb|EIJ93044.1| hypothetical protein NEPG_02000 [Nematocida parisii ERTm1]
Length = 230
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 62/110 (56%), Gaps = 5/110 (4%)
Query: 30 PSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVV 89
P T E++IY +I+ + GIW +D++ K L N+VTK +K+L+ + LIK V
Sbjct: 62 PQSFSTPEEKIIYLLIKEVGVE-GIWIKDIRT--KSGLHQNLVTKLLKTLEQRLLIKSVK 118
Query: 90 NIHNKGKKHLMAVEFEPSKDISGGAWYS-EGSLDTEFIKVVKSQCLKQII 138
+I + +K M + PS D+ G W++ E LDT F+ +K+ + I+
Sbjct: 119 SI-KQNRKVYMLYDAIPSDDLGDGPWFTQEAELDTGFVDAIKNVAYEWIL 167
>gi|378754947|gb|EHY64975.1| hypothetical protein NERG_02031 [Nematocida sp. 1 ERTm2]
Length = 231
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 64/115 (55%), Gaps = 8/115 (6%)
Query: 17 SGMSKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSI 76
SG+ R+ + P E++IY +I+ + D GIW +D++ K L N+VTK +
Sbjct: 52 SGIVYRR---NTEPQSFSAPEEKIIYLLIKESGVD-GIWIKDIRS--KSGLHQNLVTKIL 105
Query: 77 KSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSE-GSLDTEFIKVVK 130
K+L+ + LIK V +I + +K M + PS D+ G W+++ LD F++ +K
Sbjct: 106 KTLEQRVLIKAVKSI-KQNRKVYMLYDAVPSDDLGDGPWFTQDAELDVGFVEAIK 159
>gi|440297421|gb|ELP90115.1| hypothetical protein EIN_405290 [Entamoeba invadens IP1]
Length = 169
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 66/140 (47%), Gaps = 11/140 (7%)
Query: 115 WYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAV 174
+Y++ LD +F+ + C ++ A++ + + ++ SG VD+ K++I ++ +
Sbjct: 26 FYTKTGLDGDFVDTISDHCYMFLLNKGGASVNDVYEYVRESGISTVDIKKEEILSLLNRL 85
Query: 175 VLDNQIMEVKSNGSGEFTNI-PVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCT 233
V NGS E + + Y + +T + VPCG CP ++ C+
Sbjct: 86 VF---------NGSAECSVVKSTNGSLYTSKIFKPSKMVAQTNPLSLVPCGNCPFLSICS 136
Query: 234 PDGV-ISPKTCVYYTKWLDF 252
P V +P+ C Y+++ L F
Sbjct: 137 PQNVSCNPRNCKYFSELLTF 156
>gi|253745965|gb|EET01547.1| Hypothetical protein GL50581_1196 [Giardia intestinalis ATCC 50581]
Length = 233
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 82/182 (45%), Gaps = 14/182 (7%)
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
V S+K L+ + LI V++ K ++ + E + D + + S D E K+ S
Sbjct: 61 VADSLKKLETRQLI---VSVQEKQARYYLPKELSRASDATSSSLAGRFSED-ELAKL--S 114
Query: 132 QCLKQIIKLKVATLEGISDSIKRS--GAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSG 189
+ + I + I +++++ GA LT +++ I+ A++ D +ME+ +N
Sbjct: 115 ALVYKAIGRAPVVFDDICKTVQKNEIGA----LTPEEVRVIIGALMADGAVMEMVTNMGT 170
Query: 190 EFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKW 249
+ ++ Y G + S+ PC CP + C P ISP+ C+Y +W
Sbjct: 171 AYRSVSSDFYSYCPSYDYVPGHQGMHVSA--TPCCKCPHLYVCGPGSAISPEQCIYINQW 228
Query: 250 LD 251
L+
Sbjct: 229 LN 230
>gi|407410700|gb|EKF33038.1| hypothetical protein MOQ_003101 [Trypanosoma cruzi marinkellei]
Length = 363
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 6/130 (4%)
Query: 29 APSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEV 88
A S+S+ + L+ D IRS+ + GI + KV LP N V KS++ L + IKE
Sbjct: 67 ALSNSMPEGPSLVLDAIRSSG-NSGIDQATLCS--KVRLPKNEVIKSLQLLVAQKRIKER 123
Query: 89 VNIHNKGKKHLMAVEFEPSKDISGGAWYS---EGSLDTEFIKVVKSQCLKQIIKLKVATL 145
N+ K+ + EFEPS +I+GG +Y +D F+ ++ + + + +L
Sbjct: 124 RCFSNRAKRIYLLFEFEPSDEITGGTFYGGEDSREMDVWFVDGMRRLIVALVAQRHSVSL 183
Query: 146 EGISDSIKRS 155
E I+ + S
Sbjct: 184 EQITQHLHES 193
>gi|71403489|ref|XP_804539.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70867566|gb|EAN82688.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 363
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 6/130 (4%)
Query: 29 APSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEV 88
A S+S+ + L+ D IRS+ + GI + +V LP N V KS++ L + IKE
Sbjct: 67 ALSNSMPEGPSLVLDAIRSSG-NSGIDQATLCS--RVRLPKNEVIKSLQLLVAQKRIKER 123
Query: 89 VNIHNKGKKHLMAVEFEPSKDISGGAWYS---EGSLDTEFIKVVKSQCLKQIIKLKVATL 145
N+ K+ + EFEPS +I+GG +Y +D F+ ++ + + + +L
Sbjct: 124 RCFSNRAKRIYLLFEFEPSDEITGGTFYGGEDSREMDVWFVDGMRRLIVALVAQRHSVSL 183
Query: 146 EGISDSIKRS 155
E I+ + S
Sbjct: 184 EQITQHLHES 193
>gi|449303850|gb|EMC99857.1| hypothetical protein BAUCODRAFT_63420 [Baudoinia compniacensis UAMH
10762]
Length = 377
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+L +R++Y+ + + GIW RD+++ + + V K++ L+N L+K + N+
Sbjct: 72 ALGHPDRMLYEYV-EDAHRKGIWLRDLRK--RSGIQGQSVDKAMNRLENARLVKVIRNVK 128
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ +K + P+ D++GG+++ G LD I +K+
Sbjct: 129 SPMQKTYLLSHLMPTDDVTGGSFFDSGDLDESLIDEIKN 167
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 221 VPCGVCPQINFCTPDGVISPKTCVYYTKWLD 251
PCG CP + C G I+ +CVY+ W++
Sbjct: 344 APCGRCPVFDLCEEGGPINASSCVYWAAWIE 374
>gi|440491159|gb|ELQ73828.1| RNA polymerase III, subunit C34 [Trachipleistophora hominis]
Length = 235
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 81/161 (50%), Gaps = 20/161 (12%)
Query: 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKG 95
D E+ + DV++ +K G RD++ L L N++TK ++ +Q+ ++K V KG
Sbjct: 64 DDEKSVLDVLKKSK-GQGCTIRDIR--LTTKLSQNLITKILRKMQDMKMVKAV-----KG 115
Query: 96 KKH----LMAVEFEPSKDISGGAWYSEGSLDTEF----IKV----VKSQCLKQIIKLKVA 143
+K+ M E P +++GG W++ G +D EF IK+ V+++ I
Sbjct: 116 QKNRQNIFMVFEETPDDEVTGGIWFNNGDVDVEFTNQLIKLIYTFVRNKTRDLISYDHNP 175
Query: 144 TLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVK 184
T+E I I S ++++ + +I+ +V ++E++
Sbjct: 176 TIEDIKSFITESNVLSINISMADLRKIIDVMVYGQILLELR 216
>gi|71652514|ref|XP_814912.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70879926|gb|EAN93061.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 363
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 6/130 (4%)
Query: 29 APSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEV 88
A S+S+ + L+ D IRS+ + GI + KV LP + V KS++ L + IKE
Sbjct: 67 ALSNSMPEGPSLVLDAIRSSG-NSGIDQATLCS--KVRLPKSEVIKSLQLLVAQKRIKER 123
Query: 89 VNIHNKGKKHLMAVEFEPSKDISGGAWYS---EGSLDTEFIKVVKSQCLKQIIKLKVATL 145
N+ K+ + EFEPS +I+GG +Y +D F+ ++ + + + +L
Sbjct: 124 RCFSNRAKRIYLLFEFEPSDEITGGTFYGGEDSREMDVWFVDGMRRLIVALVAQRHSVSL 183
Query: 146 EGISDSIKRS 155
E I+ + S
Sbjct: 184 EQITQHLHES 193
>gi|407850126|gb|EKG04637.1| hypothetical protein TCSYLVIO_004301 [Trypanosoma cruzi]
Length = 363
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 6/130 (4%)
Query: 29 APSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEV 88
A S+S+ + L+ D IRS+ + GI + KV LP + V KS++ L + IKE
Sbjct: 67 ALSNSMPEGPSLVLDAIRSSG-NSGIDQATLCS--KVRLPKSEVIKSLQLLVAQKRIKER 123
Query: 89 VNIHNKGKKHLMAVEFEPSKDISGGAWYS---EGSLDTEFIKVVKSQCLKQIIKLKVATL 145
N+ K+ + EFEPS +I+GG +Y +D F+ ++ + + + +L
Sbjct: 124 RCFSNRAKRIYLLFEFEPSDEITGGTFYGGEDSREMDVWFVDGMRRLIVALVAQRHSVSL 183
Query: 146 EGISDSIKRS 155
E I+ + S
Sbjct: 184 EQITQHLHES 193
>gi|429966147|gb|ELA48144.1| hypothetical protein VCUG_00382 [Vavraia culicis 'floridensis']
Length = 229
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 80/165 (48%), Gaps = 22/165 (13%)
Query: 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKG 95
D ER + + ++ + G RD++ L LP N+V+K ++ +Q+ ++K KG
Sbjct: 58 DDERSVLEQLKK-ATNQGCTIRDIR--LATKLPQNLVSKILRKMQDMKVVKAF-----KG 109
Query: 96 KKH----LMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVA-------- 143
+K+ M E P +++GG W++ G +D EF+ + ++ + I+ K
Sbjct: 110 QKNRQNIFMIFEETPDDEVTGGIWFNNGDVDAEFVNQL-TKLIYTFIRNKTRELIPYELN 168
Query: 144 -TLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNG 187
T+E I I S + ++ +++I+ +V ++E++ G
Sbjct: 169 PTIEDIKSFITESNVLSIHISTADLKKIINVMVYGQILLELQDGG 213
>gi|452983857|gb|EME83615.1| hypothetical protein MYCFIDRAFT_203692 [Pseudocercospora fijiensis
CIRAD86]
Length = 327
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Query: 24 RPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKS 83
RP A + D + VI D GIW +++K++ + V K++ ++ +
Sbjct: 27 RPQDAARQITALDRDEKAVYVIVEEAHDRGIWVKEIKKKA-TGVAQQTVQKAVNKMEKAN 85
Query: 84 LIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEF 125
LIK V ++ + +K M PS+D+ G +++ G LD F
Sbjct: 86 LIKSVKSVRHPTQKTYMLSHLVPSEDVIGNSFFDAGDLDESF 127
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 6/112 (5%)
Query: 144 TLEGISDSIKRSGAFK----VDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKV 199
T E I + + S A K LT +I+ + + D ++ ++ NG G + V V
Sbjct: 214 TAEEIHNFLVTSNAIKPTKAASLTVHEIQGCIDVLCWDEKLEKI-MNGEGTWGYRTVRGV 272
Query: 200 CYKNVSKGGGGGEPKTGSSAS-VPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
+K E G+ + PCG CP ++ C G ++P+ C+Y+ +WL
Sbjct: 273 TFKPPGANYDDYEEVVGTGLTQAPCGRCPVLDLCHEGGPVNPQDCIYFEQWL 324
>gi|426238798|ref|XP_004013331.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Ovis
aries]
Length = 185
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 156 GAFKVDLTKQQIEEIVRAVVLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPK 214
G KV+L+ + IE I+ ++ D ++ M + + G ++ Y+ VS P
Sbjct: 93 GISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVSPII----PP 148
Query: 215 TGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
TG P G+CP + C G ISP C+Y T+WL+F
Sbjct: 149 TGL-VRAPRGLCPVFDDCHEGGEISPSNCIYMTEWLEF 185
>gi|308158898|gb|EFO61458.1| RNA polymerase III subunit C34 [Giardia lamblia P15]
Length = 233
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 76/181 (41%), Gaps = 14/181 (7%)
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
V S+K L+ + LI V++ K ++ E + D + S D E K+ S
Sbjct: 61 VADSLKKLETRQLI---VSVQEKQARYYFPKELSRASDAVSSSLAGRFS-DDELSKL--S 114
Query: 132 QCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEF 191
+ + + + I +I+++ LT +++ IV A++ D ++E+ +N +
Sbjct: 115 ALVYKAVGRAPVVFDDICKAIQKNEIGT--LTPEEVRVIVGALIADGAVVEMLTNMGPAY 172
Query: 192 --TNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKW 249
N C G G A+ PC CP + C P ISP+ C+Y +W
Sbjct: 173 RSVNSDFYSYCPSYDQVPGHQGM----HVAATPCCKCPHLYVCGPGSAISPEQCIYINQW 228
Query: 250 L 250
L
Sbjct: 229 L 229
>gi|159109521|ref|XP_001705025.1| RNA polymerase III subunit C34 [Giardia lamblia ATCC 50803]
gi|159114554|ref|XP_001707501.1| Hypothetical protein GL50803_121061 [Giardia lamblia ATCC 50803]
gi|157433102|gb|EDO77351.1| RNA polymerase III subunit C34 [Giardia lamblia ATCC 50803]
gi|157435607|gb|EDO79827.1| hypothetical protein GL50803_121061 [Giardia lamblia ATCC 50803]
Length = 233
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 77/179 (43%), Gaps = 10/179 (5%)
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
V S+K L+ + LI V++ K ++ E + D + S D E K+ S
Sbjct: 61 VADSLKKLETRQLI---VSVQEKQARYYFPKELSRASDAVSSSLAGRFS-DDELSKL--S 114
Query: 132 QCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEF 191
+ + + + I +I+++ LT +++ IV A++ D ++E+ +N +
Sbjct: 115 ALVYKAVGRAPVVFDDICKAIQKNEVGT--LTPEEVRVIVGALIADGAVVEMLTNMGPAY 172
Query: 192 TNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
++ Y G + A+ PC CP + C P ISP+ C+Y +WL
Sbjct: 173 RSVNSDFYSYCPSYDQVPGHQGM--HVAATPCCKCPHLYVCGPGSAISPEQCLYINQWL 229
>gi|84998828|ref|XP_954135.1| DNA-directed RNA polymerase III (-specific) subunit (RPC34 )
[Theileria annulata]
gi|65305133|emb|CAI73458.1| DNA-directed RNA polymerase III (-specific) subunit (RPC34
homologue), putative [Theileria annulata]
Length = 476
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 82/163 (50%), Gaps = 20/163 (12%)
Query: 51 DMGIWTRDMKRELKVNLPDNIVTKSIKSL-QNKSLIKEVVNIHNKGKKHLMAVEFEPSKD 109
D G+WT D+++ L +++ N V + +K L ++ LI+ + +++ K +K + EPS
Sbjct: 103 DKGLWTADIRKILGLHI--NQVQRGVKYLYESNRLIRPITDVNYKSRKLFILSSLEPSTQ 160
Query: 110 ISGGAWYSEGSLDTEFIKVVKSQC-----------LKQIIKLKVAT--LEGISDSI--KR 154
I+GG++Y+ G + ++ ++ Q L+QII T + G+ I R
Sbjct: 161 ITGGSFYNNGEFNELLVEKLQEQICSFLSNNQGSNLQQIITFLKETNIIRGLYIHIYWNR 220
Query: 155 SGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVG 197
+ +L + + I++ ++L+N+I S + +F I G
Sbjct: 221 DKILQ-ELLETDVNRIIKLLILENKIFNA-SLQNNQFIYIWCG 261
>gi|401888712|gb|EJT52664.1| DNA-directed RNA polymerase iii 34 kda polypeptide [Trichosporon
asahii var. asahii CBS 2479]
gi|406696770|gb|EKD00046.1| DNA-directed RNA polymerase iii 34 kda polypeptide [Trichosporon
asahii var. asahii CBS 8904]
Length = 568
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 221 VPCGVCPQINFCTPDGVISPKTCVYYTKWLD 251
PCG CPQ NFC G ++ C Y+T WLD
Sbjct: 467 TPCGPCPQFNFCQEGGPVNATDCKYFTSWLD 497
Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 22/143 (15%)
Query: 67 LPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEG-SLDTEF 125
+P + V K++++L+ L+K +++ + +P +D++GG W+ E D+ F
Sbjct: 100 MPRSQVNKALEALEKNMLVKTFKSVNAPTMPLYILHHLQPPEDLAGGIWFDESKEYDSMF 159
Query: 126 IK-----VVKSQCLKQ----IIKL---------KVATLEGISD---SIKRSGAFKVDLTK 164
+ V + C K+ I KL K L +D I+ S LT
Sbjct: 160 VDSLRRVVYRYVCAKKGKDSINKLCSNPIYPVSKTGALPTPADVLRHIQNSKVTTAQLTI 219
Query: 165 QQIEEIVRAVVLDNQIMEVKSNG 187
+ + EI RA+ LD I +K G
Sbjct: 220 KNVMEIARALELDGLIEAIKPIG 242
>gi|58268956|ref|XP_571634.1| DNA-directed RNA polymerase iii 34 kda polypeptide [Cryptococcus
neoformans var. neoformans JEC21]
gi|134112798|ref|XP_774942.1| hypothetical protein CNBF1070 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257590|gb|EAL20295.1| hypothetical protein CNBF1070 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57227869|gb|AAW44327.1| DNA-directed RNA polymerase iii 34 kda polypeptide, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 559
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 221 VPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
PCG CP +FC DG ++P C YY +WL
Sbjct: 483 APCGKCPVFHFCEEDGPVNPTGCEYYGEWL 512
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 73/144 (50%), Gaps = 11/144 (7%)
Query: 8 LYLLGLAKGSGMSKR-----KRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRE 62
L LL KG G K + P+ +LT + +I +IRS + GI + + R
Sbjct: 50 LRLLSQVKGKGDDKAMVYHAQTPEEAKQKATLTQEQSIILSIIRS-AGNRGIASAQITRT 108
Query: 63 LKVN-LPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSL 121
+ + +P +++ K +K+L+++ IK+ ++ + + + ++ISGG W+ +
Sbjct: 109 IGTDTMPISMLRKVLKTLESEGHIKQFKPVNAPTSVYYILAHLKLPEEISGGVWFDD--- 165
Query: 122 DTEFIK-VVKSQCLKQIIKLKVAT 144
+ E+ + +V++ C + +++ AT
Sbjct: 166 NKEYDQGLVETICAVLLNRVRTAT 189
>gi|398018787|ref|XP_003862558.1| hypothetical protein, conserved [Leishmania donovani]
gi|322500788|emb|CBZ35865.1| hypothetical protein, conserved [Leishmania donovani]
Length = 448
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 9/124 (7%)
Query: 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKREL-KVNLPDNIVTKSIKSLQNKSLIKEVVN 90
+++ ++ L+ D +R++ GI D + L KV +P + K++ +L K+LIKE +
Sbjct: 72 NNINENLSLVLDAVRASGSS-GI---DQTQLLSKVRMPKTELGKALAALTAKNLIKEHRS 127
Query: 91 IHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISD 150
N+ K+ +PS I+GGA Y LD F+ + + + + ++ + D
Sbjct: 128 FTNRAKRIYTLFNIDPSTHITGGAMYCGEELDVAFVDEWRRELTRFVSTRRMVSF----D 183
Query: 151 SIKR 154
IKR
Sbjct: 184 QIKR 187
>gi|146093093|ref|XP_001466658.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134071021|emb|CAM69700.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 448
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 9/124 (7%)
Query: 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKREL-KVNLPDNIVTKSIKSLQNKSLIKEVVN 90
+++ ++ L+ D +R++ GI D + L KV +P + K++ +L K+LIKE +
Sbjct: 72 NNINENLSLVLDAVRASGSS-GI---DQTQLLSKVRMPKTELGKALAALTAKNLIKEHRS 127
Query: 91 IHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISD 150
N+ K+ +PS I+GGA Y LD F+ + + + + ++ + D
Sbjct: 128 FTNRAKRIYTLFNIDPSTHITGGAMYCGEELDVAFVDEWRRELTRFVSTRRMVSF----D 183
Query: 151 SIKR 154
IKR
Sbjct: 184 QIKR 187
>gi|321259858|ref|XP_003194649.1| DNA-directed RNA polymerase iii 34 kDa polypeptide [Cryptococcus
gattii WM276]
gi|317461121|gb|ADV22862.1| DNA-directed RNA polymerase iii 34 kDa polypeptide, putative
[Cryptococcus gattii WM276]
Length = 557
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 221 VPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
PCG CP +FC DG ++P C YY +WL
Sbjct: 482 APCGKCPVFHFCEEDGPVNPTGCEYYGEWL 511
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 74/144 (51%), Gaps = 11/144 (7%)
Query: 8 LYLLGLAKGSGMSKRKRPDSNAPSDS-----LTDHERLIYDVIRSNKQDMGIWTRDMKRE 62
L LL KG G K ++ P ++ LT + +I +IRS + GI + + R
Sbjct: 50 LRLLSQVKGKGDDKAMVYHAHTPEEAKQKATLTQEQSIILSIIRS-AGNRGIASAQITRT 108
Query: 63 LKVN-LPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSL 121
+ + +P +++ K +K+L+++ IK+ ++ + + + ++ISGG W+ +
Sbjct: 109 IGTDTMPISMLRKVLKTLESEGHIKQFKPVNAPTSVYYILAHLKLPEEISGGVWFDD--- 165
Query: 122 DTEFIK-VVKSQCLKQIIKLKVAT 144
+ E+ + +V++ C + +++ AT
Sbjct: 166 NKEYDQGLVETICAVLLNRVRTAT 189
>gi|357511403|ref|XP_003625990.1| hypothetical protein MTR_7g109760 [Medicago truncatula]
gi|355501005|gb|AES82208.1| hypothetical protein MTR_7g109760 [Medicago truncatula]
Length = 111
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 60/165 (36%)
Query: 17 SGMSKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSI 76
S +RK+ S SLT+ E ++Y NL + +V K
Sbjct: 7 SAFRQRKQQK---VSKSLTNEEHILY-----------------------NLMNALVEKY- 39
Query: 77 KSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQ 136
S++KEV NI NKG K+ + +K+ LK
Sbjct: 40 ------SMVKEVPNIQNKGIKN---------------------------VYTLKNVYLKC 66
Query: 137 IIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIM 181
I KV+T G + IK+SG F ++T +QIEEI++ +VLD++I+
Sbjct: 67 IFMQKVSTCNGCLEWIKKSGIFNSEVTGKQIEEILQTLVLDDEIL 111
>gi|358332161|dbj|GAA50865.1| DNA-directed RNA polymerase III subunit RPC6 [Clonorchis sinensis]
Length = 1081
Score = 45.4 bits (106), Expect = 0.019, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 64/121 (52%), Gaps = 8/121 (6%)
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYS-EGSLDTEFIKVVK 130
+ + +KSL K LIKE+ + +K + ++ +PS+ ++ ++ E +D EF+ +++
Sbjct: 836 IPRILKSLIAKKLIKELPMSTGQKQKVYLLIDLQPSEKLAANTLFAGESGVDGEFVAILR 895
Query: 131 SQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGE 190
+ CLK ++ K I+D ++R A V +EEI R + + +I + NG E
Sbjct: 896 TACLK-YLQDKTNIAANIADPLERRNASYV-----SVEEIHR-FISNARICNKQPNGDVE 948
Query: 191 F 191
+
Sbjct: 949 Y 949
Score = 39.3 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 213 PKTGSSASV---PCGVCPQINFCTPDGVISPKTCVYYTKWLDF 252
P+T S+A + PC VC C P G ISP+ C + +LDF
Sbjct: 1039 PQTASTAGLAHLPCTVCMCRKDCRPGGSISPENCKLFNAFLDF 1081
>gi|401415860|ref|XP_003872425.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322488649|emb|CBZ23896.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 448
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 9/124 (7%)
Query: 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKREL-KVNLPDNIVTKSIKSLQNKSLIKEVVN 90
+++ ++ L+ D +R++ GI D + L KV +P + K++ +L K+LIKE +
Sbjct: 72 NNINENLSLVLDAVRASGSS-GI---DQTQLLSKVRMPKTELGKALAALTAKNLIKEHRS 127
Query: 91 IHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISD 150
N+ K+ +PS I+GGA Y LD F+ + + + + ++ + D
Sbjct: 128 FTNRAKRIYTLFNIDPSTHITGGAMYCGEELDVAFVDEWRRELTRFVSTRRMVSF----D 183
Query: 151 SIKR 154
IKR
Sbjct: 184 QIKR 187
>gi|392573780|gb|EIW66918.1| hypothetical protein TREMEDRAFT_74612 [Tremella mesenterica DSM
1558]
Length = 583
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 221 VPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
VPCG CPQ C DG ++ + C YY WL
Sbjct: 504 VPCGNCPQFALCEDDGPVNARECEYYDDWL 533
>gi|154341062|ref|XP_001566484.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134063807|emb|CAM39996.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 447
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 9/116 (7%)
Query: 40 LIYDVIRSNKQDMGIWTRDMKREL-KVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKH 98
L+ D +R++ G D + L KV +P + K++ +L K+LIKE + N+ K+
Sbjct: 80 LVLDAVRAS----GAGGIDQTQLLSKVRMPKTELGKALTALTAKNLIKEHRSFTNRAKRI 135
Query: 99 LMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKR 154
+PS I+GGA Y LD F+ + + + + ++ + D IKR
Sbjct: 136 YTLFNIDPSSHITGGAMYCGEELDVAFVDEWRRELTRFVSTRRMVSF----DQIKR 187
>gi|389593925|ref|XP_003722211.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|321438709|emb|CBZ12469.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 448
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 64 KVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDT 123
KV +P + K++ +L K+LIKE + N+ K+ +PS I+GGA Y LD
Sbjct: 101 KVRMPKTELGKALAALTAKNLIKEHRSFTNRAKRIYTLFNIDPSTHITGGAMYCGEELDV 160
Query: 124 EFIKVVKSQCLKQIIKLKVATLEGISDSIKR 154
F+ + + + + ++ + D IKR
Sbjct: 161 AFVDEWRRELTRFVSTRRMVSF----DQIKR 187
>gi|405121157|gb|AFR95926.1| DNA-directed RNA polymerase III 34 kda polypeptide [Cryptococcus
neoformans var. grubii H99]
Length = 561
Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 221 VPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
PCG CP +FC G ++P C YY +WL
Sbjct: 485 APCGKCPVFHFCEESGPVNPAGCEYYGEWL 514
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 73/144 (50%), Gaps = 11/144 (7%)
Query: 8 LYLLGLAKGSGMSKR-----KRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRE 62
L LL KG G K + P+ +LT + +I +IRS + GI + + R
Sbjct: 50 LRLLSQVKGKGDDKAMVYHAQTPEEAKQKATLTQEQSIILSIIRS-AGNRGIASAQITRT 108
Query: 63 LKVN-LPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSL 121
+ + +P +++ K +K+L+++ IK+ ++ + + + ++ISGG W+ +
Sbjct: 109 IGTDTMPISMLRKVLKTLESEGHIKQFKPVNAPTSVYYILAHLKLPEEISGGVWFDD--- 165
Query: 122 DTEFIK-VVKSQCLKQIIKLKVAT 144
+ E+ + +V++ C + +++ AT
Sbjct: 166 NKEYDQGLVETICAVLLNRVRTAT 189
>gi|407039037|gb|EKE39429.1| hypothetical protein ENU1_128820 [Entamoeba nuttalli P19]
Length = 151
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 11/139 (7%)
Query: 114 AWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIV-R 172
++++ LD +F+ + ++ AT+ D ++ SG VD+ K++I ++ R
Sbjct: 16 VFFTKTGLDADFVTTLSDHIFMFLLNKGGATVIETYDYVRESGISNVDIKKEEILSLLER 75
Query: 173 AVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFC 232
V L N + V NG+ G +K V K G P + VPC CP + C
Sbjct: 76 LVYLGNAEVSVAKNGNSSL----YGSKVFKPV-KFMVGRCP----LSEVPCYNCPYSSIC 126
Query: 233 TPDGV-ISPKTCVYYTKWL 250
+P V +P+ C + L
Sbjct: 127 SPTNVSCNPRNCKAFVDLL 145
>gi|167393313|ref|XP_001740524.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165895355|gb|EDR23068.1| hypothetical protein EDI_143800 [Entamoeba dispar SAW760]
Length = 151
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 11/139 (7%)
Query: 114 AWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIV-R 172
++++ LD +F+ + ++ AT+ D ++ SG VD+ K++I ++ R
Sbjct: 16 VFFTKTGLDADFVTTLSDHIFMFLLNKGGATVIETYDYVRESGISNVDIKKEEILSLLER 75
Query: 173 AVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFC 232
V L N + V NG+ G +K V K G P + VPC CP + C
Sbjct: 76 LVYLGNAEVSVAKNGNSSL----YGSKIFKPV-KFMVGRCP----LSEVPCYNCPYSSIC 126
Query: 233 TPDGV-ISPKTCVYYTKWL 250
+P V +P+ C + L
Sbjct: 127 SPTNVSCNPRNCKAFVDLL 145
>gi|167044323|gb|ABZ09002.1| putative Late embryogenesis abundant protein [uncultured marine
crenarchaeote HF4000_APKG6B14]
Length = 406
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 215 TGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
T S PC CP + C+ DG ISPKTC + W+
Sbjct: 365 TKSIEGAPCLTCPVQSKCSIDGEISPKTCQWIEDWV 400
>gi|342180343|emb|CCC89820.1| conserved hypothetical protein [Trypanosoma congolense IL3000]
Length = 192
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Query: 218 SASVPCGVCPQINFCTPD--GVISPKTCVYYTKWL 250
+ +PC C Q++ CTPD GV++P++C Y +WL
Sbjct: 157 AVGLPCVGCAQLHVCTPDGNGVVNPRSCAYLKEWL 191
>gi|167042176|gb|ABZ06909.1| putative Late embryogenesis abundant protein [uncultured marine
crenarchaeote HF4000_ANIW93H17]
Length = 387
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 215 TGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
T S PC CP + C+ DG ISPKTC + W+
Sbjct: 346 TKSIEGAPCLTCPVQSKCSIDGEISPKTCQWIEDWV 381
>gi|67467108|ref|XP_649674.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
gi|56466173|gb|EAL44299.1| hypothetical protein EHI_147230 [Entamoeba histolytica HM-1:IMSS]
gi|449706461|gb|EMD46301.1| Hypothetical protein EHI5A_156760 [Entamoeba histolytica KU27]
Length = 151
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 11/139 (7%)
Query: 114 AWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIV-R 172
++++ LD +F+ + ++ AT+ D ++ SG VD+ K++I ++ R
Sbjct: 16 VFFTKTGLDADFVTTLSDHIFMFLLNKGGATVIETYDYVRESGISNVDIKKEEILSLLER 75
Query: 173 AVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFC 232
V L N + V N + G +K V K G P + VPC CP + C
Sbjct: 76 LVYLGNAEVSVAKNSNSSL----YGSKVFKPV-KFMVGRCPL----SEVPCYNCPYSSIC 126
Query: 233 TPDGV-ISPKTCVYYTKWL 250
+P V +P+ C + L
Sbjct: 127 SPTNVSCNPRNCKAFVDLL 145
>gi|156937008|ref|YP_001434804.1| hypothetical protein Igni_0213 [Ignicoccus hospitalis KIN4/I]
gi|156565992|gb|ABU81397.1| hypothetical protein Igni_0213 [Ignicoccus hospitalis KIN4/I]
Length = 161
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 214 KTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLD 251
+ G A +PC CP N C P P TC +WL+
Sbjct: 107 RMGLVAKIPCTSCPHANRCGPGNFFDPATCTKLGQWLE 144
>gi|159164165|pdb|2DK5|A Chain A, Solution Structure Of Winged-Helix Domain In Rna
Polymerase Iii 39kda Polypeptide
Length = 91
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKG 95
+ E+L+Y +I + + GIW+RD++ K NLP + K +K+L++K LIK V ++
Sbjct: 20 NQEKLVYQIIE-DAGNKGIWSRDVR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASK 76
Query: 96 KKHLM 100
KK M
Sbjct: 77 KKVYM 81
>gi|444520451|gb|ELV13003.1| Protein transport protein Sec23B [Tupaia chinensis]
Length = 630
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNI 91
+ E+L+Y +I + + GIW+RD++ K NLP + K +K+L++K LIK V ++
Sbjct: 69 NQEKLVYQII-EDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSV 121
>gi|159164846|pdb|2YU3|A Chain A, Solution Structure Of The Domain Swapped Wingedhelix In
Dna- Directed Rna Polymerase Iii 39 Kda Polypeptide
Length = 95
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTDH-ERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D+ E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 13 LRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIE-DAGNKGIWSRDVR--YKSNLPLTE 69
Query: 72 VTKSIKSLQNKSLIKEV 88
+ K +K+L++K LIK V
Sbjct: 70 INKILKNLESKKLIKAV 86
>gi|47197137|emb|CAF88729.1| unnamed protein product [Tetraodon nigroviridis]
Length = 123
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEV 88
+ E+L+Y +I + + GIW+RD++ K NLP + K +K+L+ K LIK V
Sbjct: 70 NQEKLVYQII-EDAGNKGIWSRDIR--FKSNLPLTEINKILKNLEGKKLIKAV 119
>gi|118575757|ref|YP_875500.1| transcriptional regulator [Cenarchaeum symbiosum A]
gi|118194278|gb|ABK77196.1| transcriptional regulator [Cenarchaeum symbiosum A]
Length = 362
Score = 37.4 bits (85), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 215 TGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
T S + PC +CP C+ DG I+P+TC + W+
Sbjct: 316 TASIENSPCLICPVEQQCSADGEINPRTCQWILDWV 351
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,024,736,136
Number of Sequences: 23463169
Number of extensions: 166074392
Number of successful extensions: 344520
Number of sequences better than 100.0: 416
Number of HSP's better than 100.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 343615
Number of HSP's gapped (non-prelim): 576
length of query: 252
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 113
effective length of database: 9,097,814,876
effective search space: 1028053080988
effective search space used: 1028053080988
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 75 (33.5 bits)