BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025493
(252 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2T9S3|RPC6_BOVIN DNA-directed RNA polymerase III subunit RPC6 OS=Bos taurus
GN=POLR3F PE=2 SV=1
Length = 316
Score = 117 bits (293), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 132/259 (50%), Gaps = 27/259 (10%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 66 LRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 122
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 123 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 182
Query: 132 QCLKQII-KLKVATLEGISDSIKRSGAF----------------KVDLTKQQIEEIVRAV 174
QC K + K + A + I+R+ +F KV+L+ + IE I+ +
Sbjct: 183 QCFKFLQNKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTL 242
Query: 175 VLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCT 233
+ D ++ M + + G ++ Y+ VS P TG PCG+CP + C
Sbjct: 243 IYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVSPII----PPTG-LVRAPCGLCPVFDDCH 297
Query: 234 PDGVISPKTCVYYTKWLDF 252
G ISP C+Y T+WL+F
Sbjct: 298 EGGEISPSNCIYMTEWLEF 316
>sp|Q9H1D9|RPC6_HUMAN DNA-directed RNA polymerase III subunit RPC6 OS=Homo sapiens
GN=POLR3F PE=1 SV=1
Length = 316
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 132/259 (50%), Gaps = 27/259 (10%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 66 LRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 122
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 123 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 182
Query: 132 QCLKQI-IKLKVATLEGISDSIKRSGAF----------------KVDLTKQQIEEIVRAV 174
QC K + K + A + I+R+ +F KV+L+ + IE I+ +
Sbjct: 183 QCFKFLQSKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTL 242
Query: 175 VLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCT 233
+ D ++ M + + G ++ Y+ V+ P TG PCG+CP + C
Sbjct: 243 IYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPII----PPTG-LVRAPCGLCPVFDDCH 297
Query: 234 PDGVISPKTCVYYTKWLDF 252
G ISP C+Y T+WL+F
Sbjct: 298 EGGEISPSNCIYMTEWLEF 316
>sp|Q921X6|RPC6_MOUSE DNA-directed RNA polymerase III subunit RPC6 OS=Mus musculus
GN=Polr3f PE=1 SV=1
Length = 316
Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 131/259 (50%), Gaps = 27/259 (10%)
Query: 13 LAKGSGMSKRKRPDSNAPSDSLTD-HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ R + NA +D E+L+Y +I + + GIW+RD++ K NLP
Sbjct: 66 LRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIE-DAGNKGIWSRDIR--YKSNLPLTE 122
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
+ K +K+L++K LIK V ++ KK M +P + ++GGAWYS+ ++EF++V+
Sbjct: 123 INKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQ 182
Query: 132 QCLKQI-IKLKVATLEGISDSIKRSGAF----------------KVDLTKQQIEEIVRAV 174
QC K + K + A + I+R+ +F KV+L+ + IE I+ +
Sbjct: 183 QCFKFLQSKAETARESKQNPVIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTL 242
Query: 175 VLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCT 233
+ D ++ M + + G ++ Y+ V+ P TG PCG+CP C
Sbjct: 243 IYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPIL----PPTG-VVRAPCGLCPVFEDCH 297
Query: 234 PDGVISPKTCVYYTKWLDF 252
G ISP C+Y T+WL+F
Sbjct: 298 EGGEISPSNCIYMTEWLEF 316
>sp|Q9VD25|RPC6_DROME Probable DNA-directed RNA polymerase III subunit RPC6 OS=Drosophila
melanogaster GN=CG5380 PE=2 SV=1
Length = 293
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 120/259 (46%), Gaps = 38/259 (14%)
Query: 13 LAKGSGMSKR-KRPD--SNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPD 69
L KG + R K P+ S P D+ + E+++Y ++ + GIW RD++ +K NL
Sbjct: 53 LKKGEKLVYRAKDPEKKSALPKDA-DNEEKVVYGIVEEGG-NKGIWIRDIR--MKSNLNM 108
Query: 70 NIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVV 129
+ K +K+L+ K LIK V +++ KK M EP I+GGAWY + + EF+ V+
Sbjct: 109 IQLNKILKNLETKKLIKAVKSVNASKKKVYMLYNLEPDLSITGGAWYQDQDFEVEFVDVL 168
Query: 130 KSQCLK-----------------QIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVR 172
QCL+ ++ T+ + I G KV+L + +E I++
Sbjct: 169 NQQCLRFLQMKRDSAEKKREGPLAFKQMSCCTVNEVQKFISDLGISKVNLAEADLETILK 228
Query: 173 AVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFC 232
VV D G+ E G Y+ V+ P TG +PCG+CP I C
Sbjct: 229 TVVYD---------GNAERVRQQDGSFVYRAVN----APLPPTG-LVQMPCGICPVIKNC 274
Query: 233 TPDGVISPKTCVYYTKWLD 251
+ G ++ TC Y WLD
Sbjct: 275 SNCGDVTAITCEYMRDWLD 293
>sp|Q86JM3|RPC6_DICDI DNA-directed RNA polymerase III subunit rpc6 OS=Dictyostelium
discoideum GN=polr3f PE=3 SV=1
Length = 293
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 117/247 (47%), Gaps = 39/247 (15%)
Query: 21 KRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQ 80
K P+ A L + LIY +I ++ + G WTR++K +TK +K+L+
Sbjct: 62 KEVNPEDQAKFRGLGVEDFLIYQLIEASS-NTGAWTRELKNSSGYQQVQ--ITKILKTLE 118
Query: 81 NKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKL 140
++ LIK V +I + KK M EPS++I+GG YS+ S D ++I+++K +K +
Sbjct: 119 SRKLIKSVKSIQSGRKKVYMLYNMEPSREITGGQLYSDQSYDHQYIQIMKMH-IKTFVDN 177
Query: 141 KVAT-LEGISDSIKRSG--AFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEF------ 191
K A L I +++ A L + I+ +V V+ D I E++ G
Sbjct: 178 KGAVDLADIITYLRKVAEEATSQSLGPEDIQALVNTVIYDGDIEEMRDTRMGAMLGRRSG 237
Query: 192 -------TNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCV 244
T IPV C ++PCG CP + C+ +G++SPK CV
Sbjct: 238 ILYKPTKTPIPVNNFC-------------------NMPCGNCPVFDICSDNGLVSPKRCV 278
Query: 245 YYTKWLD 251
Y+ ++L+
Sbjct: 279 YFKQYLE 285
>sp|O94553|RPC6_SCHPO Probable DNA-directed RNA polymerase III subunit rpc6
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpc6 PE=2 SV=1
Length = 301
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 121/260 (46%), Gaps = 40/260 (15%)
Query: 13 LAKGSGMSKRK-RPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI 71
L +G+ + R R D ++ E+++Y I+ N + GIW + + L+ NL ++
Sbjct: 61 LRQGNVLVYRAVRLDEAKTVSTMEGDEQIVYSFIK-NSGNEGIWRKTLT--LRTNLHVSV 117
Query: 72 VTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKS 131
V + +KSL++K+L+K + ++ N +K M + PS +++GG W+++ LD EFI+ +K
Sbjct: 118 VDRCLKSLESKNLVKSIKSVKNPTRKIYMLYDLVPSTELTGGPWFTDQELDVEFIENLKK 177
Query: 132 QCLKQIIKLKVA--------------------TLEGISDSIKRSGAFKVDLTKQQIEEIV 171
+ + T I + ++ + KVDL+ + +V
Sbjct: 178 VIYRYVHSKSFPPKKAAMGPDLVWGPEYNGYPTALQIHNWLRSTNITKVDLSLANVISLV 237
Query: 172 RAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINF 231
++ D ++ E +S+G+ Y+ + + T S PCG CP +
Sbjct: 238 DVLIYDGKV-EKRSDGAS-----------YRAIRVNNENIDAFTES----PCGNCPVSDI 281
Query: 232 CTPDGVISPKTCVYYTKWLD 251
C + ++P TC Y KWL+
Sbjct: 282 CDANSRVNPITCEYLDKWLN 301
>sp|P91529|RPC6_CAEEL Probable DNA-directed RNA polymerase III subunit RPC6
OS=Caenorhabditis elegans GN=W09C3.4 PE=3 SV=1
Length = 296
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 44/236 (18%)
Query: 35 TDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNK 94
T+ E++IY +I +K GIW ++++ +N + K++KSL+ K LIK + +
Sbjct: 82 TEEEQVIYSLIEESK-TRGIWIKELREGSGLNQLQ--LRKTLKSLETKKLIKTIKAVGTT 138
Query: 95 GKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQC------------------LKQ 136
K +++ EP ++GG +YS+ LD+E I + S C ++
Sbjct: 139 RKCYIL-FSIEPDMSLTGGTFYSDQQLDSELINTLISVCGSYAASRRKHAIDENPNNIQM 197
Query: 137 IIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPV 196
+ + I+ I V L+ + +E I+ VLD I + G+ P
Sbjct: 198 QREASYIRPQEIAQFITEKRVLNVPLSLEDLERILEVAVLDGTI---ERRADGKIRACP- 253
Query: 197 GKVCYKNVSKGGGGGEPKTGSS--ASVPCGVCPQINFCTPDGVISPKTCVYYTKWL 250
P++ S SVPC +CP + C P VISP++C Y WL
Sbjct: 254 ----------------PRSSISPLVSVPCAICPVVEDCRPGYVISPQSCDYMKNWL 293
>sp|P32910|RPC6_YEAST DNA-directed RNA polymerase III subunit RPC6 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPC34 PE=1
SV=1
Length = 317
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 59/94 (62%), Gaps = 3/94 (3%)
Query: 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92
+++ E L+Y I ++ ++ GIW++ +K + NL ++V K +KSL+++ +K V ++
Sbjct: 85 TMSAEEALVYSYIEASGRE-GIWSKTIKA--RTNLHQHVVLKCLKSLESQRYVKSVKSVK 141
Query: 93 NKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFI 126
+K M +PS DI+GG W+++G LD EFI
Sbjct: 142 FPTRKIYMLYSLQPSVDITGGPWFTDGELDIEFI 175
>sp|Q9PLC6|SYG_CHLMU Glycine--tRNA ligase OS=Chlamydia muridarum (strain MoPn / Nigg)
GN=glyQS PE=3 SV=1
Length = 1003
Score = 34.3 bits (77), Expect = 0.86, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 29 APSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVT-----KSIKSLQNKS 83
+P D L ++ +++ +G + L N P N +T +SI+ LQN
Sbjct: 835 SPEDVLNKLCSFVWGRLKTILSSLGFAKEVIAAVLTENCPKNPLTIINSARSIQELQNTQ 894
Query: 84 LIKEVVNIHNKGKKHLMAVEFEPSKDI 110
++ + + HN+ KK L ++ F ++ I
Sbjct: 895 TLETIASTHNRLKKILASLSFSVTEQI 921
>sp|B0B923|SYG_CHLT2 Glycine--tRNA ligase OS=Chlamydia trachomatis serovar L2 (strain
434/Bu / ATCC VR-902B) GN=glyQS PE=3 SV=1
Length = 1003
Score = 33.5 bits (75), Expect = 1.6, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 29 APSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVT-----KSIKSLQNKS 83
+P + L+ ++ +R+ +G + L N P N +T +SI+ L+N
Sbjct: 835 SPEEVLSKLNTFVWGRLRTILSSLGFDKEIIATVLTDNCPKNPLTIIQSAQSIQELKNTQ 894
Query: 84 LIKEVVNIHNKGKKHLMAVEFEPSKDI 110
++K + HN+ KK L ++ F ++ +
Sbjct: 895 ILKTIAATHNRLKKILASLSFSVTEQM 921
>sp|Q8CAA5|F163A_MOUSE Protein FAM163A OS=Mus musculus GN=Fam163a PE=2 SV=1
Length = 168
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 194 IPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTP 234
+P C +V G GG P T S S PCGV C+P
Sbjct: 61 VPACNACSSHVLDGRGGLAPLTSESCSQPCGVASHCTTCSP 101
>sp|Q5UNT6|YR680_MIMIV Uncharacterized protein R680 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R680 PE=4 SV=1
Length = 111
Score = 31.6 bits (70), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 21/119 (17%)
Query: 80 QNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIK 139
QN L+K I K +++++ KD+ G WY + + F+ ++ + +K+II
Sbjct: 13 QNNCLLKT---IFTNSKINILSI-----KDVYGNCWYMLSDISSTFL--IRQRKIKKIIT 62
Query: 140 LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGK 198
D++ ++LTK Q + + N+ + V N G FT IP K
Sbjct: 63 ---------KDNLDNFKHLCINLTKNQKKYYQTKYYIKNKTLFV--NNKGIFTLIPFSK 110
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,807,219
Number of Sequences: 539616
Number of extensions: 4078636
Number of successful extensions: 9145
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 9124
Number of HSP's gapped (non-prelim): 26
length of query: 252
length of database: 191,569,459
effective HSP length: 115
effective length of query: 137
effective length of database: 129,513,619
effective search space: 17743365803
effective search space used: 17743365803
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)