Query 025493
Match_columns 252
No_of_seqs 131 out of 234
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 11:26:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025493.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025493hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dk5_A DNA-directed RNA polyme 99.9 7.7E-25 2.6E-29 168.8 9.8 84 23-109 7-90 (91)
2 2yu3_A DNA-directed RNA polyme 99.9 1.2E-23 4.2E-28 163.6 9.0 74 20-96 21-94 (95)
3 1sd4_A Penicillinase repressor 98.1 8.7E-05 3E-09 57.3 13.4 65 31-101 5-71 (126)
4 3eco_A MEPR; mutlidrug efflux 98.1 5.7E-05 1.9E-09 58.8 12.1 65 32-99 27-91 (139)
5 1p4x_A Staphylococcal accessor 97.9 6.2E-05 2.1E-09 66.7 10.4 147 32-187 30-211 (250)
6 3bro_A Transcriptional regulat 97.8 9.7E-05 3.3E-09 57.3 9.3 60 32-94 30-89 (141)
7 2g9w_A Conserved hypothetical 97.8 0.00021 7.1E-09 56.9 11.2 56 31-90 4-63 (138)
8 3k0l_A Repressor protein; heli 97.8 0.00025 8.7E-09 56.9 11.8 65 32-101 42-106 (162)
9 2nnn_A Probable transcriptiona 97.8 0.00027 9.4E-09 54.5 10.7 56 33-93 35-90 (140)
10 3cjn_A Transcriptional regulat 97.8 0.00042 1.4E-08 55.3 12.1 65 32-101 48-112 (162)
11 2rdp_A Putative transcriptiona 97.8 0.00041 1.4E-08 54.4 11.9 57 32-93 38-94 (150)
12 3bj6_A Transcriptional regulat 97.7 0.00039 1.3E-08 54.6 11.8 63 32-99 36-98 (152)
13 1okr_A MECI, methicillin resis 97.7 0.00073 2.5E-08 51.8 12.9 62 31-100 5-70 (123)
14 3bja_A Transcriptional regulat 97.7 0.00036 1.2E-08 53.8 11.1 63 32-99 29-91 (139)
15 3jw4_A Transcriptional regulat 97.7 9.3E-05 3.2E-09 58.4 7.8 59 32-93 37-95 (148)
16 3oop_A LIN2960 protein; protei 97.7 0.00037 1.3E-08 54.4 11.2 65 32-101 33-97 (143)
17 3r0a_A Putative transcriptiona 97.7 0.00036 1.2E-08 54.9 11.1 62 32-96 22-83 (123)
18 3ech_A MEXR, multidrug resista 97.7 0.0002 7E-09 56.0 9.4 58 32-94 33-90 (142)
19 3e6m_A MARR family transcripti 97.7 0.00032 1.1E-08 56.2 10.7 63 32-99 49-111 (161)
20 2eth_A Transcriptional regulat 97.7 0.00034 1.2E-08 55.6 10.7 63 32-99 40-102 (154)
21 2nyx_A Probable transcriptiona 97.7 0.00048 1.6E-08 55.8 11.5 57 33-94 42-98 (168)
22 3hsr_A HTH-type transcriptiona 97.7 0.00028 9.6E-09 55.3 9.7 64 32-100 32-95 (140)
23 4aik_A Transcriptional regulat 97.7 0.0011 3.7E-08 53.4 13.4 59 32-94 27-85 (151)
24 2fbh_A Transcriptional regulat 97.7 0.00074 2.5E-08 52.4 12.0 57 32-93 33-90 (146)
25 2vn2_A DNAD, chromosome replic 97.6 7.2E-05 2.5E-09 59.6 5.9 72 32-107 28-102 (128)
26 4hbl_A Transcriptional regulat 97.6 0.0002 6.8E-09 56.7 8.3 63 32-99 37-99 (149)
27 3deu_A Transcriptional regulat 97.6 0.00084 2.9E-08 54.5 12.2 66 32-101 49-114 (166)
28 1s3j_A YUSO protein; structura 97.6 0.00072 2.5E-08 53.2 11.4 61 32-97 33-93 (155)
29 2a61_A Transcriptional regulat 97.6 0.0005 1.7E-08 53.4 10.3 56 33-93 30-85 (145)
30 3s2w_A Transcriptional regulat 97.6 0.00064 2.2E-08 54.2 11.1 63 32-99 46-108 (159)
31 2frh_A SARA, staphylococcal ac 97.6 0.00017 5.7E-09 56.4 7.2 59 32-93 33-91 (127)
32 2fa5_A Transcriptional regulat 97.6 0.00053 1.8E-08 54.5 10.3 58 32-94 45-102 (162)
33 2bv6_A MGRA, HTH-type transcri 97.6 0.0007 2.4E-08 52.6 10.7 61 33-98 34-94 (142)
34 3u2r_A Regulatory protein MARR 97.6 0.00014 4.9E-09 58.7 6.6 59 32-93 42-100 (168)
35 1lj9_A Transcriptional regulat 97.5 0.00036 1.2E-08 54.3 8.5 63 32-99 25-87 (144)
36 3fm5_A Transcriptional regulat 97.5 0.0007 2.4E-08 53.4 10.1 59 32-94 35-93 (150)
37 3bdd_A Regulatory protein MARR 97.5 0.00043 1.5E-08 53.5 8.6 64 33-101 28-91 (142)
38 4b8x_A SCO5413, possible MARR- 97.5 0.0011 3.9E-08 52.9 11.2 60 32-94 31-90 (147)
39 1jgs_A Multiple antibiotic res 97.5 0.00048 1.6E-08 53.2 8.6 58 32-94 30-87 (138)
40 1sfx_A Conserved hypothetical 97.5 0.00064 2.2E-08 50.1 8.9 61 33-100 17-77 (109)
41 2gxg_A 146AA long hypothetical 97.5 0.0017 6E-08 50.3 11.7 61 32-98 33-93 (146)
42 3nrv_A Putative transcriptiona 97.5 0.00029 9.8E-09 55.3 7.2 63 32-99 36-98 (148)
43 3boq_A Transcriptional regulat 97.4 0.00069 2.4E-08 53.7 9.2 57 33-93 44-100 (160)
44 2v79_A DNA replication protein 97.4 0.00027 9.1E-09 57.3 6.5 72 33-107 29-102 (135)
45 1p6r_A Penicillinase repressor 97.4 0.00091 3.1E-08 48.4 8.7 57 31-90 4-62 (82)
46 3g3z_A NMB1585, transcriptiona 97.4 0.00045 1.6E-08 54.0 7.4 65 32-101 27-91 (145)
47 3nqo_A MARR-family transcripti 97.4 0.00068 2.3E-08 56.3 8.8 60 33-95 38-97 (189)
48 2fbi_A Probable transcriptiona 97.4 0.00052 1.8E-08 53.0 7.4 57 32-93 32-88 (142)
49 2qww_A Transcriptional regulat 97.3 0.00071 2.4E-08 53.3 8.2 62 33-99 38-101 (154)
50 1z91_A Organic hydroperoxide r 97.3 0.00042 1.4E-08 54.1 6.8 64 32-100 36-99 (147)
51 3kp7_A Transcriptional regulat 97.3 0.0014 4.7E-08 51.7 9.7 55 33-93 35-91 (151)
52 3bpv_A Transcriptional regulat 97.3 0.00078 2.7E-08 51.9 8.0 57 32-93 25-81 (138)
53 3f3x_A Transcriptional regulat 97.3 0.00071 2.4E-08 52.9 7.4 55 33-93 34-88 (144)
54 3tgn_A ADC operon repressor AD 97.3 0.00054 1.8E-08 53.4 6.6 63 31-99 33-95 (146)
55 3cdh_A Transcriptional regulat 97.3 0.00055 1.9E-08 54.1 6.8 63 32-99 39-101 (155)
56 2pex_A Transcriptional regulat 97.3 0.00095 3.3E-08 52.6 8.1 58 32-94 43-100 (153)
57 3lmm_A Uncharacterized protein 97.2 0.00048 1.6E-08 67.9 7.2 124 33-183 427-563 (583)
58 1qgp_A Protein (double strande 97.2 0.00096 3.3E-08 48.9 6.8 60 36-101 14-73 (77)
59 1ku9_A Hypothetical protein MJ 97.2 0.0016 5.4E-08 50.5 8.1 63 33-100 23-85 (152)
60 1hsj_A Fusion protein consisti 97.1 0.00067 2.3E-08 63.5 6.8 65 32-100 400-464 (487)
61 1p4x_A Staphylococcal accessor 97.1 0.0011 3.6E-08 58.7 7.7 65 32-100 154-218 (250)
62 2hr3_A Probable transcriptiona 97.1 0.00081 2.8E-08 52.5 6.2 61 32-96 31-91 (147)
63 1ub9_A Hypothetical protein PH 97.1 0.002 7E-08 47.2 8.0 62 35-101 15-76 (100)
64 2d1h_A ST1889, 109AA long hypo 97.1 0.0041 1.4E-07 45.7 9.5 57 32-92 17-73 (109)
65 1tbx_A ORF F-93, hypothetical 97.1 0.0013 4.5E-08 48.8 6.5 55 32-91 4-62 (99)
66 1fx7_A Iron-dependent represso 97.0 0.0029 1E-07 54.4 9.6 118 32-175 2-121 (230)
67 1qbj_A Protein (double-strande 97.0 0.0022 7.5E-08 47.7 7.5 61 36-102 10-70 (81)
68 2k4b_A Transcriptional regulat 97.0 0.0011 3.6E-08 51.1 5.5 57 31-90 30-88 (99)
69 2fxa_A Protease production reg 97.0 0.0018 6.1E-08 54.9 7.3 57 32-93 44-100 (207)
70 2fbk_A Transcriptional regulat 96.9 0.00072 2.5E-08 55.4 4.0 59 32-93 65-124 (181)
71 2x4h_A Hypothetical protein SS 96.8 0.026 9E-07 43.8 12.6 56 32-89 9-65 (139)
72 2qvo_A Uncharacterized protein 96.8 0.0023 7.8E-08 47.6 6.0 51 33-85 9-60 (95)
73 2w25_A Probable transcriptiona 96.7 0.0087 3E-07 47.8 9.0 58 33-95 4-61 (150)
74 1xn7_A Hypothetical protein YH 96.6 0.0074 2.5E-07 44.5 7.6 68 131-234 5-72 (78)
75 3cuo_A Uncharacterized HTH-typ 96.6 0.0095 3.3E-07 43.5 8.1 58 36-101 24-81 (99)
76 2cfx_A HTH-type transcriptiona 96.6 0.01 3.6E-07 47.2 8.9 56 33-93 2-57 (144)
77 2xvc_A ESCRT-III, SSO0910; cel 96.6 0.0056 1.9E-07 43.1 6.0 45 38-86 12-56 (59)
78 2htj_A P fimbrial regulatory p 96.5 0.016 5.6E-07 41.7 8.8 71 39-118 3-73 (81)
79 2ia0_A Putative HTH-type trans 96.5 0.012 4.1E-07 48.7 8.9 72 30-106 11-86 (171)
80 2pjp_A Selenocysteine-specific 96.4 0.096 3.3E-06 40.8 13.2 113 34-183 1-113 (121)
81 2p5v_A Transcriptional regulat 96.4 0.019 6.5E-07 46.4 9.3 58 32-94 6-63 (162)
82 4fx0_A Probable transcriptiona 96.3 0.0059 2E-07 48.9 5.7 70 32-107 29-100 (148)
83 2heo_A Z-DNA binding protein 1 96.3 0.012 4E-07 41.7 6.6 51 33-87 7-57 (67)
84 2fsw_A PG_0823 protein; alpha- 96.3 0.013 4.6E-07 44.3 7.3 51 51-103 36-87 (107)
85 2f2e_A PA1607; transcription f 96.3 0.0093 3.2E-07 48.1 6.7 49 52-103 36-84 (146)
86 2qq9_A Diphtheria toxin repres 96.2 0.0094 3.2E-07 51.3 7.0 119 32-176 2-122 (226)
87 2oqg_A Possible transcriptiona 96.2 0.021 7.1E-07 42.9 8.1 49 36-90 21-69 (114)
88 2pn6_A ST1022, 150AA long hypo 96.2 0.0083 2.8E-07 47.7 5.9 56 34-94 1-56 (150)
89 2hzt_A Putative HTH-type trans 96.1 0.019 6.6E-07 43.5 7.6 51 51-102 25-75 (107)
90 2obp_A Putative DNA-binding pr 96.1 0.033 1.1E-06 42.7 8.8 67 32-106 12-82 (96)
91 2dbb_A Putative HTH-type trans 96.1 0.015 5.3E-07 46.3 7.2 57 33-94 6-62 (151)
92 2pg4_A Uncharacterized protein 96.0 0.014 4.8E-07 43.0 6.2 43 40-86 19-62 (95)
93 3k2z_A LEXA repressor; winged 96.0 0.0067 2.3E-07 50.9 4.9 54 33-88 2-57 (196)
94 2jt1_A PEFI protein; solution 96.0 0.03 1E-06 41.1 7.7 52 38-93 6-62 (77)
95 2wte_A CSA3; antiviral protein 96.0 0.02 6.8E-07 50.4 7.9 51 33-88 149-199 (244)
96 1xmk_A Double-stranded RNA-spe 95.9 0.027 9.3E-07 41.7 7.4 59 36-103 11-70 (79)
97 2k02_A Ferrous iron transport 95.9 0.015 5.1E-07 43.9 5.9 46 131-184 5-50 (87)
98 2cyy_A Putative HTH-type trans 95.9 0.015 5.3E-07 46.4 6.4 56 33-93 4-59 (151)
99 2cg4_A Regulatory protein ASNC 95.9 0.036 1.2E-06 44.2 8.4 55 33-92 5-59 (152)
100 2qlz_A Transcription factor PF 95.7 0.041 1.4E-06 48.2 8.8 46 37-88 13-58 (232)
101 1z7u_A Hypothetical protein EF 95.5 0.022 7.6E-07 43.5 5.7 60 38-102 24-83 (112)
102 2lnb_A Z-DNA-binding protein 1 95.5 0.024 8.1E-07 42.2 5.5 61 33-103 16-76 (80)
103 2e1c_A Putative HTH-type trans 95.4 0.053 1.8E-06 44.8 8.1 69 33-106 24-97 (171)
104 1i1g_A Transcriptional regulat 95.4 0.024 8.2E-07 44.3 5.5 57 34-95 2-58 (141)
105 3i4p_A Transcriptional regulat 95.3 0.056 1.9E-06 43.9 7.7 69 34-107 1-74 (162)
106 1sfu_A 34L protein; protein/Z- 95.3 0.065 2.2E-06 39.5 7.1 51 37-90 13-64 (75)
107 1r1u_A CZRA, repressor protein 95.2 0.11 3.6E-06 39.1 8.5 47 37-89 27-73 (106)
108 3pqk_A Biofilm growth-associat 95.1 0.097 3.3E-06 38.8 8.0 47 37-89 24-70 (102)
109 1yyv_A Putative transcriptiona 95.1 0.05 1.7E-06 43.1 6.6 50 51-102 46-96 (131)
110 3jth_A Transcription activator 95.0 0.093 3.2E-06 38.5 7.6 36 52-89 35-70 (98)
111 2kko_A Possible transcriptiona 95.0 0.07 2.4E-06 40.5 6.9 45 39-89 28-72 (108)
112 2fu4_A Ferric uptake regulatio 94.9 0.07 2.4E-06 38.2 6.5 59 33-92 14-75 (83)
113 1q1h_A TFE, transcription fact 94.9 0.052 1.8E-06 40.9 6.0 51 36-90 18-68 (110)
114 1u2w_A CADC repressor, cadmium 94.9 0.1 3.5E-06 40.4 7.8 47 38-89 44-90 (122)
115 1on2_A Transcriptional regulat 94.8 0.053 1.8E-06 42.3 6.1 36 52-89 21-56 (142)
116 1xma_A Predicted transcription 94.7 0.073 2.5E-06 43.1 6.8 62 37-102 42-111 (145)
117 4a5n_A Uncharacterized HTH-typ 94.6 0.11 3.8E-06 41.5 7.6 51 51-102 37-87 (131)
118 1y0u_A Arsenical resistance op 94.5 0.18 6.2E-06 37.0 8.1 47 36-89 31-77 (96)
119 2lkp_A Transcriptional regulat 94.5 0.17 5.9E-06 38.3 8.2 49 35-89 31-79 (119)
120 1r7j_A Conserved hypothetical 94.5 0.085 2.9E-06 39.7 6.2 45 40-88 9-53 (95)
121 2esh_A Conserved hypothetical 94.4 0.083 2.8E-06 40.8 6.2 62 37-102 14-83 (118)
122 1oyi_A Double-stranded RNA-bin 94.2 0.053 1.8E-06 40.5 4.5 44 39-88 20-63 (82)
123 3l7w_A Putative uncharacterize 94.1 0.06 2.1E-06 41.0 4.7 62 37-101 10-73 (108)
124 1uly_A Hypothetical protein PH 94.1 0.11 3.8E-06 43.8 6.8 50 34-89 18-67 (192)
125 2co5_A Viral protein F93; vira 94.0 0.091 3.1E-06 40.1 5.5 67 32-102 5-74 (99)
126 2fu4_A Ferric uptake regulatio 94.0 0.17 5.7E-06 36.1 6.7 53 130-185 19-73 (83)
127 3df8_A Possible HXLR family tr 93.9 0.13 4.5E-06 39.3 6.4 47 50-101 39-85 (111)
128 2jsc_A Transcriptional regulat 93.9 0.15 5E-06 39.2 6.8 47 37-89 22-68 (118)
129 3hrs_A Metalloregulator SCAR; 93.9 0.45 1.5E-05 40.3 10.4 110 39-176 9-118 (214)
130 3f6o_A Probable transcriptiona 93.8 0.2 6.9E-06 38.3 7.3 56 37-101 19-74 (118)
131 2p4w_A Transcriptional regulat 93.7 0.27 9.4E-06 41.8 8.7 61 36-102 15-77 (202)
132 4esb_A Transcriptional regulat 93.7 0.19 6.7E-06 38.9 7.0 62 37-102 10-77 (115)
133 1z6r_A MLC protein; transcript 93.6 0.098 3.3E-06 48.0 6.1 50 37-91 17-66 (406)
134 3cta_A Riboflavin kinase; stru 93.5 0.17 5.7E-06 43.2 7.0 54 34-90 5-62 (230)
135 3hhh_A Transcriptional regulat 93.3 0.11 3.8E-06 40.4 5.1 62 37-102 14-81 (116)
136 2dql_A PEX protein; circadian 93.3 0.16 5.6E-06 39.3 6.0 62 41-103 27-93 (115)
137 2h09_A Transcriptional regulat 93.3 0.16 5.4E-06 40.2 6.0 45 40-89 44-88 (155)
138 1xmk_A Double-stranded RNA-spe 93.2 0.21 7.3E-06 36.8 6.2 49 127-183 10-59 (79)
139 1r1t_A Transcriptional repress 93.1 0.34 1.2E-05 37.6 7.6 36 52-89 58-93 (122)
140 4esf_A PADR-like transcription 93.1 0.32 1.1E-05 37.8 7.4 61 38-102 13-79 (117)
141 1bja_A Transcription regulator 93.1 0.21 7E-06 38.3 6.1 50 32-86 12-62 (95)
142 3b73_A PHIH1 repressor-like pr 93.1 0.19 6.5E-06 39.2 6.0 53 33-88 10-62 (111)
143 3t8r_A Staphylococcus aureus C 92.9 0.24 8.1E-06 39.7 6.6 64 40-111 15-78 (143)
144 4g6q_A Putative uncharacterize 92.8 0.45 1.6E-05 39.5 8.5 50 51-102 34-86 (182)
145 1lva_A Selenocysteine-specific 92.8 2.1 7E-05 37.4 13.0 114 32-183 133-249 (258)
146 2zcw_A TTHA1359, transcription 92.6 0.39 1.3E-05 38.8 7.7 60 33-101 116-186 (202)
147 1lva_A Selenocysteine-specific 92.5 0.9 3.1E-05 39.7 10.4 106 50-184 84-191 (258)
148 3f8b_A Transcriptional regulat 92.5 0.41 1.4E-05 36.9 7.3 64 38-102 14-82 (116)
149 3lwf_A LIN1550 protein, putati 92.5 0.61 2.1E-05 38.3 8.7 60 44-111 35-94 (159)
150 2e1n_A PEX, period extender; c 92.4 0.17 5.9E-06 40.7 5.1 69 33-102 31-104 (138)
151 3elk_A Putative transcriptiona 92.4 0.3 1E-05 38.0 6.4 64 38-102 16-82 (117)
152 2y75_A HTH-type transcriptiona 92.4 0.3 1E-05 37.8 6.4 48 40-89 13-60 (129)
153 3ryp_A Catabolite gene activat 92.2 0.52 1.8E-05 37.9 7.9 52 33-87 137-199 (210)
154 3iwz_A CAP-like, catabolite ac 92.2 0.52 1.8E-05 38.5 8.0 60 33-101 157-227 (230)
155 1xn7_A Hypothetical protein YH 92.1 0.38 1.3E-05 35.2 6.2 44 40-88 6-49 (78)
156 1xd7_A YWNA; structural genomi 92.1 0.38 1.3E-05 38.4 6.8 58 42-111 15-72 (145)
157 2k02_A Ferrous iron transport 92.0 0.36 1.2E-05 36.2 6.2 45 40-89 6-50 (87)
158 3f6v_A Possible transcriptiona 92.0 0.26 8.8E-06 40.0 5.8 46 38-89 60-105 (151)
159 3neu_A LIN1836 protein; struct 92.0 0.84 2.9E-05 35.5 8.6 40 55-101 39-78 (125)
160 3b02_A Transcriptional regulat 91.9 0.41 1.4E-05 38.5 7.0 61 32-101 108-179 (195)
161 1z05_A Transcriptional regulat 91.8 0.28 9.4E-06 45.5 6.5 48 37-89 40-87 (429)
162 3ri2_A Transcriptional regulat 91.8 0.17 5.7E-06 40.0 4.3 37 66-102 49-86 (123)
163 3u1d_A Uncharacterized protein 91.7 0.97 3.3E-05 37.2 9.0 63 36-101 29-97 (151)
164 1zyb_A Transcription regulator 91.6 0.56 1.9E-05 38.9 7.6 55 30-87 158-218 (232)
165 2oz6_A Virulence factor regula 91.6 0.69 2.4E-05 37.1 7.9 52 33-87 134-196 (207)
166 2zkz_A Transcriptional repress 91.5 0.73 2.5E-05 34.1 7.4 47 37-89 28-74 (99)
167 4ham_A LMO2241 protein; struct 91.5 2.5 8.6E-05 32.9 10.9 40 55-101 40-79 (134)
168 2zfw_A PEX; five alpha-helices 91.4 0.3 1E-05 39.9 5.5 63 40-103 48-115 (148)
169 1mzb_A Ferric uptake regulatio 91.1 0.91 3.1E-05 35.7 8.0 54 129-185 19-74 (136)
170 3kcc_A Catabolite gene activat 91.1 0.75 2.6E-05 39.0 8.0 60 33-101 187-257 (260)
171 2xzm_8 RPS25E,; ribosome, tran 91.0 0.32 1.1E-05 39.9 5.3 68 31-102 39-108 (143)
172 1ylf_A RRF2 family protein; st 90.9 0.62 2.1E-05 37.3 6.9 61 43-113 21-81 (149)
173 1ft9_A Carbon monoxide oxidati 90.7 0.44 1.5E-05 39.1 6.0 52 33-87 132-195 (222)
174 1yg2_A Gene activator APHA; vi 90.7 0.65 2.2E-05 38.1 7.0 62 38-103 4-73 (179)
175 1jhf_A LEXA repressor; LEXA SO 90.6 0.3 1E-05 40.5 5.0 55 32-88 2-59 (202)
176 3eyy_A Putative iron uptake re 90.4 0.5 1.7E-05 37.8 5.9 55 129-186 20-74 (145)
177 2o03_A Probable zinc uptake re 90.0 0.91 3.1E-05 35.4 7.0 56 128-186 11-67 (131)
178 3mwm_A ZUR, putative metal upt 89.8 0.9 3.1E-05 36.0 7.0 56 128-186 14-70 (139)
179 1mzb_A Ferric uptake regulatio 89.8 1.3 4.5E-05 34.8 7.9 66 33-101 15-83 (136)
180 2vxz_A Pyrsv_GP04; viral prote 89.8 1.1 3.7E-05 37.3 7.4 113 40-177 15-137 (165)
181 3u5c_Z RP45, S31, YS23, 40S ri 89.8 0.33 1.1E-05 38.1 4.2 58 39-100 44-102 (108)
182 2xrn_A HTH-type transcriptiona 89.3 0.56 1.9E-05 40.3 5.8 45 40-88 10-54 (241)
183 3k69_A Putative transcription 89.2 0.83 2.8E-05 37.4 6.5 61 42-111 18-78 (162)
184 1mkm_A ICLR transcriptional re 88.9 0.7 2.4E-05 39.7 6.1 45 40-88 12-56 (249)
185 2v9v_A Selenocysteine-specific 88.8 6.5 0.00022 30.0 14.4 112 38-183 4-122 (135)
186 1k78_A Paired box protein PAX5 88.7 7 0.00024 30.2 11.7 109 32-173 31-141 (149)
187 3iz6_V 40S ribosomal protein S 88.6 0.23 7.9E-06 38.9 2.5 48 50-101 57-104 (108)
188 2htj_A P fimbrial regulatory p 88.6 1.9 6.4E-05 30.5 7.3 47 130-184 2-48 (81)
189 3rkx_A Biotin-[acetyl-COA-carb 88.4 1.1 3.6E-05 40.8 7.2 60 34-102 1-61 (323)
190 2gau_A Transcriptional regulat 88.4 1.3 4.4E-05 36.3 7.2 52 33-87 150-212 (232)
191 2xig_A Ferric uptake regulatio 88.3 1.4 4.8E-05 35.3 7.2 57 128-187 27-84 (150)
192 2pi2_A Replication protein A 3 88.2 0.093 3.2E-06 46.6 0.0 54 33-87 204-257 (270)
193 3dv8_A Transcriptional regulat 88.1 0.71 2.4E-05 37.4 5.3 60 33-101 145-209 (220)
194 3e6c_C CPRK, cyclic nucleotide 88.0 0.93 3.2E-05 37.9 6.2 62 32-101 145-217 (250)
195 2jt1_A PEFI protein; solution 87.9 0.78 2.7E-05 33.4 4.9 47 130-184 6-58 (77)
196 2fe3_A Peroxide operon regulat 87.7 2.7 9.4E-05 33.3 8.5 65 33-101 19-86 (145)
197 3d0s_A Transcriptional regulat 87.6 0.71 2.4E-05 37.7 5.1 52 33-87 146-209 (227)
198 3la7_A Global nitrogen regulat 87.4 0.74 2.5E-05 38.5 5.2 60 33-101 162-233 (243)
199 1p6r_A Penicillinase repressor 87.4 2.2 7.4E-05 30.1 7.0 53 129-185 10-62 (82)
200 2fmy_A COOA, carbon monoxide o 87.3 0.73 2.5E-05 37.6 5.0 51 34-87 137-199 (220)
201 2fe3_A Peroxide operon regulat 87.3 1.6 5.6E-05 34.6 7.0 55 129-186 23-78 (145)
202 1qbj_A Protein (double-strande 86.9 1.6 5.5E-05 32.0 6.1 51 126-184 8-61 (81)
203 2dk8_A DNA-directed RNA polyme 86.9 3.8 0.00013 30.4 8.1 67 35-107 13-79 (81)
204 4ev0_A Transcription regulator 86.8 1 3.5E-05 36.3 5.6 58 35-101 141-203 (216)
205 3e97_A Transcriptional regulat 86.4 0.9 3.1E-05 37.2 5.1 40 54-101 176-215 (231)
206 3fx3_A Cyclic nucleotide-bindi 86.3 2 7E-05 35.2 7.2 61 31-101 149-217 (237)
207 3dkw_A DNR protein; CRP-FNR, H 86.2 1.4 4.7E-05 35.8 6.1 58 35-101 152-218 (227)
208 2hoe_A N-acetylglucosamine kin 86.1 0.69 2.4E-05 42.1 4.6 48 37-90 21-68 (380)
209 2w57_A Ferric uptake regulatio 86.1 1.9 6.3E-05 34.6 6.7 66 33-101 14-82 (150)
210 1tc3_C Protein (TC3 transposas 85.8 1.5 5.1E-05 26.8 4.8 45 32-83 4-49 (51)
211 2o03_A Probable zinc uptake re 85.4 2 7E-05 33.4 6.4 57 34-92 9-68 (131)
212 1oyi_A Double-stranded RNA-bin 85.3 0.58 2E-05 34.8 3.0 48 127-183 16-63 (82)
213 2w57_A Ferric uptake regulatio 85.0 1.6 5.5E-05 35.0 5.8 54 129-185 18-73 (150)
214 2w48_A Sorbitol operon regulat 84.5 1.5 5.1E-05 39.1 5.9 50 37-89 6-56 (315)
215 3eyy_A Putative iron uptake re 84.4 3.1 0.00011 33.0 7.2 65 32-101 15-82 (145)
216 2xig_A Ferric uptake regulatio 84.4 2.5 8.6E-05 33.8 6.7 65 33-101 24-91 (150)
217 1fse_A GERE; helix-turn-helix 83.7 2.6 8.9E-05 28.6 5.7 45 30-81 8-52 (74)
218 4ets_A Ferric uptake regulatio 83.5 4 0.00014 33.2 7.7 58 32-91 29-91 (162)
219 3mq0_A Transcriptional repress 83.4 1.4 4.6E-05 38.8 5.1 45 40-88 34-78 (275)
220 1je8_A Nitrate/nitrite respons 83.3 1.7 5.9E-05 31.1 4.8 52 23-81 11-62 (82)
221 2k27_A Paired box protein PAX- 83.1 5.1 0.00017 31.6 8.0 114 32-178 24-139 (159)
222 2p8t_A Hypothetical protein PH 82.8 2.5 8.7E-05 36.2 6.4 52 34-89 13-64 (200)
223 4ets_A Ferric uptake regulatio 82.8 2.4 8.2E-05 34.5 6.0 53 130-185 35-90 (162)
224 3mwm_A ZUR, putative metal upt 82.7 2.2 7.5E-05 33.7 5.6 65 33-101 11-78 (139)
225 1ldj_A Cullin homolog 1, CUL-1 82.7 2.4 8.3E-05 42.7 7.2 148 30-184 583-750 (760)
226 2g7u_A Transcriptional regulat 82.6 1.1 3.7E-05 38.8 4.1 47 40-88 15-62 (257)
227 3ulq_B Transcriptional regulat 82.2 3 0.0001 30.6 5.8 47 29-82 25-71 (90)
228 2b0l_A GTP-sensing transcripti 81.8 2 6.7E-05 32.5 4.8 33 55-89 45-77 (102)
229 3cuq_B Vacuolar protein-sortin 81.8 15 0.0005 31.6 11.0 106 45-183 89-201 (218)
230 2o0m_A Transcriptional regulat 81.3 0.3 1E-05 44.4 0.0 49 33-86 17-65 (345)
231 3by6_A Predicted transcription 81.3 3.2 0.00011 32.2 6.0 55 39-101 14-76 (126)
232 3t5x_A PCI domain-containing p 80.7 1.6 5.4E-05 37.0 4.4 68 114-185 107-182 (203)
233 1qgp_A Protein (double strande 80.6 2.4 8.4E-05 30.4 4.8 49 128-184 14-65 (77)
234 1ldd_A APC2WHB, anaphase promo 80.6 4.7 0.00016 29.3 6.2 55 129-183 9-66 (74)
235 1ku3_A Sigma factor SIGA; heli 80.2 7.6 0.00026 26.6 7.1 51 28-80 5-59 (73)
236 3f8b_A Transcriptional regulat 80.0 12 0.0004 28.5 8.8 79 121-205 4-83 (116)
237 2ia2_A Putative transcriptiona 80.0 1.2 4.2E-05 38.7 3.5 46 40-87 22-68 (265)
238 2p5k_A Arginine repressor; DNA 79.8 10 0.00036 24.9 8.0 48 132-186 9-56 (64)
239 1o5l_A Transcriptional regulat 79.8 0.38 1.3E-05 39.4 0.2 52 33-87 140-196 (213)
240 3c57_A Two component transcrip 79.4 4.2 0.00014 29.8 5.8 46 28-80 22-67 (95)
241 3r4k_A Transcriptional regulat 78.8 2.8 9.6E-05 36.3 5.5 46 41-88 8-54 (260)
242 1pdn_C Protein (PRD paired); p 78.8 16 0.00056 26.5 11.5 107 33-172 17-125 (128)
243 1v4r_A Transcriptional repress 78.8 1.6 5.3E-05 32.3 3.3 32 55-88 37-68 (102)
244 3dpl_C Cullin-5; ubiquitin, NE 78.6 25 0.00084 32.4 12.1 147 33-184 196-372 (382)
245 2ek5_A Predicted transcription 78.5 2.8 9.5E-05 32.8 4.8 32 55-88 30-61 (129)
246 2heo_A Z-DNA binding protein 1 78.4 3.2 0.00011 28.8 4.6 47 128-182 10-57 (67)
247 1p4w_A RCSB; solution structur 78.1 6.5 0.00022 29.4 6.7 44 31-81 32-75 (99)
248 3eyi_A Z-DNA-binding protein 1 77.4 4.8 0.00016 29.2 5.3 61 33-103 6-68 (72)
249 2o0y_A Transcriptional regulat 77.4 2.8 9.7E-05 36.2 5.0 47 40-88 24-71 (260)
250 3lmm_A Uncharacterized protein 77.2 0.48 1.6E-05 46.5 0.0 63 36-106 516-578 (583)
251 2bgc_A PRFA; bacterial infecti 76.9 3.5 0.00012 34.0 5.3 61 33-101 137-210 (238)
252 1sfx_A Conserved hypothetical 76.4 6.8 0.00023 27.8 6.2 48 130-185 22-69 (109)
253 3tqn_A Transcriptional regulat 76.4 3.3 0.00011 31.4 4.6 32 55-88 35-66 (113)
254 2qby_A CDC6 homolog 1, cell di 76.3 6.2 0.00021 34.3 7.0 71 31-104 281-363 (386)
255 2p7v_B Sigma-70, RNA polymeras 76.3 9.5 0.00033 25.7 6.6 47 31-79 3-49 (68)
256 2z99_A Putative uncharacterize 75.4 9.1 0.00031 33.2 7.6 60 32-99 96-155 (219)
257 3qph_A TRMB, A global transcri 75.1 0.074 2.5E-06 48.8 -6.1 60 33-101 15-74 (342)
258 3nw0_A Non-structural maintena 75.0 3.4 0.00011 36.0 4.8 138 34-182 3-153 (238)
259 2xvc_A ESCRT-III, SSO0910; cel 75.0 3.8 0.00013 28.7 4.1 42 140-181 7-56 (59)
260 1bm9_A RTP, TER, replication t 74.8 16 0.00053 29.0 8.3 66 36-102 18-91 (122)
261 1j5y_A Transcriptional regulat 74.0 6.5 0.00022 32.2 6.2 46 38-87 23-69 (187)
262 1yg2_A Gene activator APHA; vi 74.0 6.4 0.00022 32.0 6.1 72 129-206 3-74 (179)
263 3l9f_A Putative uncharacterize 73.4 2.5 8.4E-05 36.0 3.5 38 66-103 68-107 (204)
264 2esh_A Conserved hypothetical 73.2 11 0.00036 28.6 6.8 72 127-205 12-84 (118)
265 3u0k_A Rcamp; fluorescent prot 73.0 13 0.00046 35.4 8.8 129 12-178 274-424 (440)
266 2rnj_A Response regulator prot 72.9 4.2 0.00014 29.3 4.3 47 28-81 24-70 (91)
267 3k69_A Putative transcription 72.5 5.8 0.0002 32.2 5.4 57 120-184 6-62 (162)
268 3ri2_A Transcriptional regulat 72.3 12 0.00043 29.0 7.1 66 129-205 22-87 (123)
269 2k4b_A Transcriptional regulat 71.5 3.1 0.00011 31.4 3.3 50 132-185 39-88 (99)
270 1qb5_D Protein (heat labIle en 71.3 2.9 0.0001 31.3 3.0 37 82-125 21-59 (99)
271 4fp5_D LT-IIB, heat-labIle ent 71.0 2.8 9.6E-05 31.3 2.8 36 83-125 22-59 (98)
272 1ub9_A Hypothetical protein PH 70.5 11 0.00036 26.7 5.9 53 125-185 13-65 (100)
273 4esf_A PADR-like transcription 70.4 25 0.00087 26.7 8.5 75 123-205 5-80 (117)
274 4asn_A TUBR; transcription, tu 70.4 16 0.00055 27.4 6.9 65 31-100 9-77 (101)
275 2f2e_A PA1607; transcription f 70.2 23 0.0008 27.7 8.5 96 132-245 28-143 (146)
276 2o8x_A Probable RNA polymerase 69.8 15 0.00052 24.2 6.3 44 30-79 12-55 (70)
277 2ovk_B RLC, myosin regulatory 69.6 32 0.0011 25.5 9.7 117 29-174 5-130 (153)
278 3cuo_A Uncharacterized HTH-typ 69.4 12 0.00041 26.4 6.0 49 128-184 24-72 (99)
279 1t6s_A Conserved hypothetical 68.7 3.3 0.00011 34.3 3.1 55 34-96 92-146 (162)
280 1okr_A MECI, methicillin resis 68.5 8.8 0.0003 28.4 5.3 52 130-185 12-63 (123)
281 3maj_A DNA processing chain A; 66.9 5.8 0.0002 37.1 4.8 51 32-88 324-374 (382)
282 2x8x_X TLR1789 protein, OMP85; 66.9 16 0.00056 29.7 7.1 95 49-143 13-129 (235)
283 1sd4_A Penicillinase repressor 66.4 15 0.00051 27.3 6.3 52 130-185 12-63 (126)
284 1xma_A Predicted transcription 66.2 13 0.00045 29.5 6.2 71 129-205 42-112 (145)
285 2v7f_A RPS19, RPS19E SSU ribos 66.1 7.2 0.00025 31.7 4.7 35 50-88 66-114 (150)
286 2dk5_A DNA-directed RNA polyme 66.1 15 0.00052 27.1 6.1 60 131-205 23-84 (91)
287 3bpv_A Transcriptional regulat 65.6 16 0.00056 27.0 6.4 49 130-186 31-79 (138)
288 3l9f_A Putative uncharacterize 64.6 15 0.00053 31.0 6.7 72 129-206 37-108 (204)
289 2oqg_A Possible transcriptiona 64.6 14 0.00046 27.0 5.6 48 129-185 22-69 (114)
290 2cfx_A HTH-type transcriptiona 64.3 17 0.00059 28.1 6.5 49 128-184 5-53 (144)
291 1xb4_A VPS25, hypothetical 23. 64.1 13 0.00044 31.9 6.0 70 30-100 124-201 (202)
292 1p2f_A Response regulator; DRR 64.0 15 0.00052 29.4 6.3 46 32-80 144-192 (220)
293 2hgc_A YJCQ protein; SR346, st 63.9 8.1 0.00028 29.7 4.3 56 40-107 9-64 (102)
294 2lhi_A Calmodulin, serine/thre 63.7 52 0.0018 25.9 9.6 120 32-175 3-130 (176)
295 2dql_A PEX protein; circadian 63.7 45 0.0015 25.2 9.3 72 129-206 22-94 (115)
296 1w5s_A Origin recognition comp 63.5 20 0.00069 31.5 7.5 76 29-105 301-387 (412)
297 1x3u_A Transcriptional regulat 62.9 9.9 0.00034 26.0 4.3 44 31-81 14-57 (79)
298 2w25_A Probable transcriptiona 62.2 22 0.00074 27.6 6.7 51 127-185 6-56 (150)
299 3edp_A LIN2111 protein; APC883 62.1 11 0.00037 32.2 5.2 40 55-101 35-74 (236)
300 1tty_A Sigma-A, RNA polymerase 61.9 24 0.00082 25.0 6.4 47 30-78 15-61 (87)
301 1stz_A Heat-inducible transcri 60.9 18 0.00063 32.8 6.8 53 34-89 15-72 (338)
302 1xd7_A YWNA; structural genomi 60.7 8.7 0.0003 30.2 4.1 33 144-184 25-57 (145)
303 3b73_A PHIH1 repressor-like pr 60.6 6.5 0.00022 30.3 3.2 53 125-183 10-62 (111)
304 1y0u_A Arsenical resistance op 60.6 17 0.00059 26.0 5.5 46 129-184 32-77 (96)
305 3oop_A LIN2960 protein; protei 60.5 12 0.00041 28.2 4.8 47 132-186 41-87 (143)
306 2p5v_A Transcriptional regulat 60.5 21 0.00073 28.0 6.5 51 127-185 9-59 (162)
307 1tbx_A ORF F-93, hypothetical 60.5 26 0.00088 24.9 6.4 51 131-185 11-61 (99)
308 2jsc_A Transcriptional regulat 60.1 5.8 0.0002 30.0 2.9 49 127-184 20-68 (118)
309 3k0l_A Repressor protein; heli 60.0 19 0.00064 27.9 6.0 47 132-186 50-96 (162)
310 3u1d_A Uncharacterized protein 60.0 31 0.0011 28.1 7.4 67 129-205 30-99 (151)
311 3szt_A QCSR, quorum-sensing co 59.9 16 0.00055 30.8 5.9 45 31-82 173-217 (237)
312 3jth_A Transcription activator 59.1 24 0.00084 25.1 6.1 46 130-184 25-70 (98)
313 3htu_A Vacuolar protein-sortin 58.9 11 0.00036 27.8 3.9 52 38-90 11-70 (79)
314 2qlz_A Transcription factor PF 58.7 10 0.00034 32.8 4.5 37 51-89 176-212 (232)
315 2rdp_A Putative transcriptiona 58.7 21 0.00072 26.8 5.9 46 132-185 46-91 (150)
316 4esb_A Transcriptional regulat 58.6 27 0.00094 26.4 6.5 70 128-205 9-78 (115)
317 3bro_A Transcriptional regulat 58.5 35 0.0012 25.2 7.1 47 132-186 38-86 (141)
318 3eqx_A FIC domain containing t 58.5 14 0.00047 34.1 5.6 55 40-102 301-355 (373)
319 2g9w_A Conserved hypothetical 58.5 17 0.00058 27.9 5.4 53 129-185 10-63 (138)
320 2ovk_B RLC, myosin regulatory 58.1 21 0.00072 26.6 5.8 58 119-181 8-66 (153)
321 2vxz_A Pyrsv_GP04; viral prote 57.8 21 0.0007 29.7 5.9 53 125-186 8-60 (165)
322 3k2z_A LEXA repressor; winged 57.7 17 0.00057 29.8 5.5 47 129-183 10-57 (196)
323 3tgn_A ADC operon repressor AD 57.7 20 0.00068 26.8 5.6 48 129-185 39-86 (146)
324 1h8b_A ACT-EF34, alpha-actinin 57.4 15 0.00052 26.0 4.6 42 127-178 10-52 (75)
325 1hw1_A FADR, fatty acid metabo 57.4 18 0.00061 30.1 5.7 40 55-101 33-72 (239)
326 3eet_A Putative GNTR-family tr 57.3 10 0.00034 33.2 4.3 33 55-89 55-87 (272)
327 3ech_A MEXR, multidrug resista 56.9 15 0.0005 27.7 4.7 47 131-185 40-86 (142)
328 3q9s_A DNA-binding response re 56.9 14 0.00048 30.9 5.0 54 33-89 182-247 (249)
329 3r0a_A Putative transcriptiona 56.8 21 0.00071 27.2 5.6 50 128-185 26-77 (123)
330 2dbb_A Putative HTH-type trans 56.6 20 0.00068 27.8 5.6 51 127-185 8-58 (151)
331 2kn2_A Calmodulin; S MAPK phos 56.2 28 0.00094 23.8 5.8 55 120-177 2-57 (92)
332 2fbh_A Transcriptional regulat 56.1 31 0.0011 25.5 6.5 46 132-185 41-87 (146)
333 1on2_A Transcriptional regulat 55.9 31 0.0011 26.1 6.5 50 127-184 7-56 (142)
334 3s2w_A Transcriptional regulat 55.9 21 0.00073 27.4 5.6 47 132-186 54-100 (159)
335 2igp_A Retinoblastoma-associat 55.7 30 0.001 26.9 6.4 60 121-180 11-88 (120)
336 3bdd_A Regulatory protein MARR 55.7 32 0.0011 25.3 6.5 48 131-186 34-81 (142)
337 3g3z_A NMB1585, transcriptiona 55.6 18 0.00061 27.2 5.0 47 131-185 34-80 (145)
338 3eco_A MEPR; mutlidrug efflux 55.1 23 0.00079 26.3 5.6 47 132-186 35-83 (139)
339 4hbl_A Transcriptional regulat 55.1 12 0.00042 28.5 4.1 47 131-185 44-90 (149)
340 3bwg_A Uncharacterized HTH-typ 55.0 12 0.00042 31.8 4.4 39 55-100 31-69 (239)
341 1lj9_A Transcriptional regulat 54.9 32 0.0011 25.6 6.4 47 132-186 33-79 (144)
342 1jgs_A Multiple antibiotic res 54.8 34 0.0012 25.2 6.5 46 133-186 39-84 (138)
343 2l02_A Uncharacterized protein 54.8 59 0.002 24.0 7.4 52 40-100 12-63 (82)
344 2pex_A Transcriptional regulat 54.6 22 0.00074 27.0 5.4 45 133-185 52-96 (153)
345 2wv0_A YVOA, HTH-type transcri 54.6 12 0.0004 32.0 4.2 40 55-101 36-75 (243)
346 2nyx_A Probable transcriptiona 54.3 21 0.00072 27.9 5.4 47 132-186 49-95 (168)
347 3bj6_A Transcriptional regulat 54.2 30 0.001 26.0 6.1 47 131-185 43-89 (152)
348 2lv7_A Calcium-binding protein 54.1 13 0.00045 27.2 3.9 56 120-178 29-85 (100)
349 2jpc_A SSRB; DNA binding prote 54.1 20 0.00069 23.1 4.5 38 37-81 2-39 (61)
350 2qww_A Transcriptional regulat 54.0 26 0.00087 26.5 5.7 46 132-185 45-92 (154)
351 1ylf_A RRF2 family protein; st 54.0 38 0.0013 26.5 6.9 37 141-185 29-65 (149)
352 2a61_A Transcriptional regulat 53.9 27 0.00093 25.9 5.8 47 131-185 36-82 (145)
353 2ia0_A Putative HTH-type trans 53.6 31 0.0011 27.7 6.5 51 127-185 16-66 (171)
354 2nnn_A Probable transcriptiona 53.4 25 0.00086 25.9 5.5 47 132-186 42-88 (140)
355 3p9c_A Caffeic acid O-methyltr 53.0 20 0.00067 32.2 5.6 50 37-89 41-95 (364)
356 2cg4_A Regulatory protein ASNC 53.0 32 0.0011 26.6 6.3 49 128-184 8-56 (152)
357 2d1h_A ST1889, 109AA long hypo 53.0 32 0.0011 24.2 5.8 42 136-185 30-71 (109)
358 2qc0_A Uncharacterized protein 52.9 12 0.00041 34.3 4.2 55 39-101 300-354 (373)
359 2q0o_A Probable transcriptiona 52.6 24 0.00082 29.4 5.8 44 31-81 173-216 (236)
360 2y75_A HTH-type transcriptiona 52.3 30 0.001 26.1 5.8 44 133-184 14-60 (129)
361 3d5l_A Regulatory protein RECX 52.3 46 0.0016 28.1 7.6 59 117-181 42-109 (221)
362 3nrv_A Putative transcriptiona 52.1 21 0.00073 26.8 5.0 48 130-185 42-89 (148)
363 3bdn_A Lambda repressor; repre 52.1 16 0.00056 30.2 4.6 45 31-77 4-52 (236)
364 2xub_A DNA-directed RNA polyme 52.0 47 0.0016 31.8 8.4 113 52-186 32-163 (534)
365 2gxg_A 146AA long hypothetical 51.8 34 0.0012 25.4 6.1 47 131-186 40-86 (146)
366 3pfi_A Holliday junction ATP-d 51.7 32 0.0011 29.7 6.7 56 31-89 258-314 (338)
367 3cdh_A Transcriptional regulat 51.4 20 0.00069 27.2 4.8 46 132-185 47-92 (155)
368 2hr3_A Probable transcriptiona 51.4 42 0.0014 25.0 6.6 50 128-185 35-85 (147)
369 2hye_C Cullin-4A, CUL-4A; beta 51.1 19 0.00067 36.1 5.7 143 32-184 589-749 (759)
370 2eth_A Transcriptional regulat 51.1 33 0.0011 26.1 6.0 49 130-186 46-94 (154)
371 3l7w_A Putative uncharacterize 51.0 33 0.0011 25.4 5.8 67 128-205 9-75 (108)
372 3lwf_A LIN1550 protein, putati 50.9 91 0.0031 25.0 8.8 62 115-184 16-78 (159)
373 1a04_A Nitrate/nitrite respons 50.7 27 0.00093 27.7 5.6 45 31-82 152-196 (215)
374 3cuq_B Vacuolar protein-sortin 50.5 33 0.0011 29.3 6.4 67 117-184 69-136 (218)
375 3hhh_A Transcriptional regulat 50.5 46 0.0016 25.2 6.7 70 128-205 13-82 (116)
376 3qrx_A Centrin; calcium-bindin 50.4 53 0.0018 24.5 7.1 110 30-177 18-149 (169)
377 1kgs_A DRRD, DNA binding respo 50.3 25 0.00087 28.0 5.4 45 32-79 150-199 (225)
378 2dk8_A DNA-directed RNA polyme 50.1 45 0.0015 24.5 6.2 63 127-206 13-76 (81)
379 3hsr_A HTH-type transcriptiona 49.9 17 0.00057 27.4 4.0 48 131-186 39-86 (140)
380 1u2w_A CADC repressor, cadmium 49.9 54 0.0018 24.6 7.0 47 130-184 44-90 (122)
381 3cjn_A Transcriptional regulat 49.8 38 0.0013 25.9 6.2 46 132-185 56-101 (162)
382 2h09_A Transcriptional regulat 49.5 50 0.0017 25.3 6.9 53 124-184 36-88 (155)
383 1xb4_A VPS25, hypothetical 23. 49.5 89 0.0031 26.6 8.9 99 66-185 84-191 (202)
384 3ic7_A Putative transcriptiona 49.5 5.2 0.00018 30.9 1.0 39 55-100 37-75 (126)
385 2zfw_A PEX; five alpha-helices 49.2 61 0.0021 25.9 7.4 69 133-207 49-117 (148)
386 3hh0_A Transcriptional regulat 49.1 85 0.0029 24.7 8.3 40 53-99 4-43 (146)
387 1s3j_A YUSO protein; structura 49.0 25 0.00084 26.6 4.9 45 133-185 42-86 (155)
388 3c3w_A Two component transcrip 48.9 37 0.0013 27.4 6.3 45 31-82 147-191 (225)
389 2pmy_A RAS and EF-hand domain- 48.9 31 0.001 24.0 5.1 54 119-177 19-73 (91)
390 1l3l_A Transcriptional activat 48.8 25 0.00086 29.3 5.3 44 31-81 171-214 (234)
391 1u78_A TC3 transposase, transp 48.3 80 0.0027 23.3 11.3 98 32-174 5-103 (141)
392 3ox6_A Calcium-binding protein 48.0 75 0.0026 22.9 8.1 56 119-177 3-59 (153)
393 1r1u_A CZRA, repressor protein 47.9 54 0.0018 23.8 6.5 47 130-185 28-74 (106)
394 3hug_A RNA polymerase sigma fa 47.7 44 0.0015 23.6 5.9 42 31-78 35-76 (92)
395 2opo_A Polcalcin CHE A 3; calc 47.7 39 0.0013 22.7 5.4 54 120-177 4-58 (86)
396 3f8m_A GNTR-family protein tra 47.1 19 0.00066 30.8 4.4 33 55-90 38-70 (248)
397 2gqq_A Leucine-responsive regu 47.0 4.8 0.00016 32.1 0.5 50 33-87 10-59 (163)
398 3c7j_A Transcriptional regulat 47.0 21 0.00073 30.1 4.6 47 40-88 30-82 (237)
399 3fwb_A Cell division control p 47.0 57 0.0019 24.0 6.7 56 119-177 15-71 (161)
400 2hzt_A Putative HTH-type trans 46.7 79 0.0027 23.0 7.3 60 132-206 18-77 (107)
401 3pqk_A Biofilm growth-associat 46.5 69 0.0024 22.8 6.9 46 130-184 25-70 (102)
402 1avs_A Troponin C; muscle cont 46.0 58 0.002 22.1 6.1 54 121-177 14-68 (90)
403 2hs5_A Putative transcriptiona 45.6 32 0.0011 29.0 5.5 47 40-88 32-84 (239)
404 2fbi_A Probable transcriptiona 45.6 30 0.001 25.5 4.8 47 131-185 39-85 (142)
405 2pn6_A ST1022, 150AA long hypo 45.6 24 0.00081 27.2 4.3 49 128-184 3-51 (150)
406 2v1u_A Cell division control p 45.6 62 0.0021 27.8 7.5 60 31-90 285-353 (387)
407 1ucr_A Protein DSVD; dissimila 45.3 17 0.00057 26.8 3.1 51 128-185 3-57 (78)
408 3bja_A Transcriptional regulat 45.0 26 0.00088 25.8 4.3 48 131-186 36-83 (139)
409 1exr_A Calmodulin; high resolu 44.9 78 0.0027 23.3 7.1 36 139-177 96-131 (148)
410 1bia_A BIRA bifunctional prote 44.9 39 0.0013 30.0 6.2 47 36-87 5-51 (321)
411 2fa5_A Transcriptional regulat 44.9 41 0.0014 25.6 5.6 46 132-185 53-98 (162)
412 4gyi_A RIO2 kinase; protein ki 44.6 38 0.0013 31.6 6.3 63 28-92 6-71 (397)
413 1jhg_A Trp operon repressor; c 44.5 54 0.0018 24.9 6.0 44 33-80 35-83 (101)
414 2ktg_A Calmodulin, putative; e 44.4 47 0.0016 22.1 5.3 55 120-177 7-62 (85)
415 1z7u_A Hypothetical protein EF 44.3 51 0.0017 24.3 5.9 47 132-186 26-72 (112)
416 3dtp_E RLC, myosin regulatory 44.2 20 0.00069 28.5 3.8 58 119-181 49-107 (196)
417 1k2h_A S100A1, S-100 protein, 44.1 71 0.0024 21.6 6.4 51 125-178 7-65 (93)
418 1ufm_A COP9 complex subunit 4; 43.9 23 0.00079 25.8 3.8 54 119-183 10-63 (84)
419 3dp7_A SAM-dependent methyltra 43.8 36 0.0012 30.3 5.8 43 41-87 40-82 (363)
420 1eh2_A EPS15; calcium binding, 43.6 38 0.0013 25.2 5.1 58 111-177 3-60 (106)
421 3ke2_A Uncharacterized protein 43.6 1.2E+02 0.004 23.8 8.8 72 55-146 35-108 (117)
422 2p4w_A Transcriptional regulat 43.5 22 0.00074 29.8 4.1 79 128-227 15-93 (202)
423 2vn2_A DNAD, chromosome replic 43.5 31 0.0011 26.4 4.7 38 140-185 49-86 (128)
424 2fsw_A PG_0823 protein; alpha- 43.4 59 0.002 23.6 6.1 60 132-206 29-88 (107)
425 3i5g_C Myosin catalytic light 43.3 39 0.0013 26.3 5.3 34 139-175 98-131 (159)
426 2vz4_A Tipal, HTH-type transcr 43.2 97 0.0033 22.8 8.3 70 54-155 2-71 (108)
427 1w7p_D VPS36P, YLR417W; ESCRT- 43.1 60 0.0021 31.9 7.6 94 66-183 454-548 (566)
428 1wlz_A DJBP, CAP-binding prote 42.9 41 0.0014 23.6 5.0 34 139-175 37-70 (105)
429 2x4h_A Hypothetical protein SS 42.9 61 0.0021 24.2 6.3 45 132-184 21-65 (139)
430 3rm1_A Protein S100-B; alpha-h 42.7 84 0.0029 21.9 7.0 51 125-178 7-65 (92)
431 3t8r_A Staphylococcus aureus C 42.7 28 0.00096 27.3 4.4 36 141-184 27-62 (143)
432 3qp6_A CVIR transcriptional re 42.5 62 0.0021 27.8 7.0 45 31-82 195-239 (265)
433 1fp1_D Isoliquiritigenin 2'-O- 42.4 22 0.00075 31.7 4.1 45 41-88 49-101 (372)
434 2e1n_A PEX, period extender; c 42.4 1.2E+02 0.0041 23.7 8.9 69 133-207 39-107 (138)
435 3klo_A Transcriptional regulat 42.2 37 0.0013 27.3 5.3 44 32-82 158-201 (225)
436 1top_A Troponin C; contractIle 41.6 87 0.003 23.0 7.0 36 139-177 109-144 (162)
437 1ys7_A Transcriptional regulat 41.5 35 0.0012 27.3 4.9 45 32-79 158-207 (233)
438 4ds7_A Calmodulin, CAM; protei 41.5 60 0.002 23.4 5.9 105 33-175 4-130 (147)
439 3ihu_A Transcriptional regulat 41.4 27 0.00093 28.8 4.3 46 40-88 20-72 (222)
440 3sxy_A Transcriptional regulat 41.2 25 0.00086 28.9 4.1 53 40-100 16-75 (218)
441 3t72_q RNA polymerase sigma fa 40.9 45 0.0015 24.8 5.1 45 30-76 16-60 (99)
442 1c07_A Protein (epidermal grow 40.9 60 0.0021 22.9 5.7 48 125-177 8-56 (95)
443 3fm5_A Transcriptional regulat 40.8 35 0.0012 25.7 4.6 45 133-185 44-89 (150)
444 2f62_A Nucleoside 2-deoxyribos 40.7 18 0.00062 29.5 3.0 33 92-136 6-39 (161)
445 2yuf_A NGFI-A-binding protein 40.6 74 0.0025 25.7 6.4 45 112-156 1-45 (142)
446 3e6m_A MARR family transcripti 40.5 23 0.00079 27.3 3.5 45 133-185 58-102 (161)
447 2bv6_A MGRA, HTH-type transcri 40.4 30 0.001 25.7 4.1 46 132-185 41-86 (142)
448 1tw3_A COMT, carminomycin 4-O- 40.3 53 0.0018 28.6 6.3 43 40-88 43-85 (360)
449 3f3x_A Transcriptional regulat 40.3 58 0.002 24.2 5.8 46 132-186 41-86 (144)
450 2cyy_A Putative HTH-type trans 40.1 34 0.0012 26.5 4.5 49 128-184 7-55 (151)
451 2o3f_A Putative HTH-type trans 40.0 24 0.00083 26.6 3.5 49 32-83 17-67 (111)
452 3r0j_A Possible two component 40.0 87 0.003 25.5 7.3 58 33-91 176-242 (250)
453 1fnn_A CDC6P, cell division co 40.0 81 0.0028 27.2 7.4 59 31-90 283-353 (389)
454 2obh_A Centrin-2; DNA repair c 39.9 1E+02 0.0035 22.6 7.1 36 139-177 92-127 (143)
455 1s7o_A Hypothetical UPF0122 pr 39.4 55 0.0019 24.7 5.5 43 32-80 21-63 (113)
456 3nqo_A MARR-family transcripti 39.4 72 0.0025 25.4 6.5 49 130-186 43-93 (189)
457 3ayh_A DNA-directed RNA polyme 39.1 69 0.0024 25.2 6.2 46 126-173 52-100 (136)
458 3deu_A Transcriptional regulat 38.9 40 0.0014 26.3 4.8 37 141-185 67-103 (166)
459 3elk_A Putative transcriptiona 38.9 74 0.0025 24.0 6.2 70 127-205 13-83 (117)
460 3akb_A Putative calcium bindin 38.9 67 0.0023 23.7 5.9 34 139-177 111-144 (166)
461 2fok_A R.FOKI, FOKI restrictio 38.9 25 0.00087 34.2 4.1 140 37-183 196-360 (579)
462 1zar_A RIO2 kinase; serine kin 38.8 1.1E+02 0.0039 25.9 8.1 54 31-87 7-62 (282)
463 2ip6_A PAPB, PEDB; immunity pr 38.4 19 0.00065 28.0 2.6 23 33-55 75-97 (112)
464 2joj_A Centrin protein; N-term 38.3 53 0.0018 21.3 4.7 51 124-177 4-55 (77)
465 1ixc_A CBNR, LYSR-type regulat 38.3 55 0.0019 26.7 5.7 46 35-87 2-50 (294)
466 3cuq_A Vacuolar-sorting protei 38.1 55 0.0019 28.5 5.9 52 31-87 149-200 (234)
467 1i1g_A Transcriptional regulat 38.0 31 0.0011 26.1 3.9 48 129-184 5-52 (141)
468 3cuq_A Vacuolar-sorting protei 38.0 1.5E+02 0.0052 25.7 8.7 87 66-182 114-200 (234)
469 2esn_A Probable transcriptiona 37.8 57 0.002 27.0 5.8 50 31-87 7-59 (310)
470 1yio_A Response regulatory pro 37.5 51 0.0017 25.8 5.2 43 32-81 141-183 (208)
471 1hst_A Histone H5; chromosomal 37.5 88 0.003 23.0 6.2 58 34-91 7-69 (90)
472 3dtp_E RLC, myosin regulatory 37.3 1.5E+02 0.005 23.2 10.9 113 22-177 39-173 (196)
473 2x48_A CAG38821; archeal virus 37.1 35 0.0012 21.6 3.5 35 36-77 19-53 (55)
474 4ds7_A Calmodulin, CAM; protei 37.1 80 0.0027 22.7 6.0 55 120-177 4-59 (147)
475 2pi2_A Replication protein A 3 36.9 7.2 0.00025 34.2 0.0 52 126-184 205-259 (270)
476 3u5c_T 40S ribosomal protein S 36.7 26 0.00088 28.6 3.3 46 41-89 61-118 (144)
477 2w84_A Peroxisomal membrane pr 36.7 88 0.003 22.4 5.7 41 128-173 16-58 (70)
478 2e1c_A Putative HTH-type trans 36.5 40 0.0014 27.1 4.5 50 127-184 26-75 (171)
479 2kko_A Possible transcriptiona 36.4 66 0.0023 23.5 5.4 43 133-184 30-72 (108)
480 2di3_A Bacterial regulatory pr 36.4 26 0.00089 29.3 3.5 31 55-87 30-60 (239)
481 1jko_C HIN recombinase, DNA-in 36.3 25 0.00084 21.4 2.6 41 33-80 5-46 (52)
482 4aan_A Cytochrome C551 peroxid 36.3 32 0.0011 31.5 4.2 33 141-174 281-313 (341)
483 3lsg_A Two-component response 36.2 86 0.003 22.3 6.0 42 38-81 4-45 (103)
484 1wwu_A Hypothetical protein FL 36.1 32 0.0011 26.3 3.5 31 142-172 23-67 (99)
485 3l4g_A Phenylalanyl-tRNA synth 36.1 7.6 0.00026 37.7 0.0 48 37-88 6-54 (508)
486 4a6d_A Hydroxyindole O-methylt 35.8 74 0.0025 28.2 6.6 59 37-102 29-87 (353)
487 1xsv_A Hypothetical UPF0122 pr 35.5 66 0.0022 24.1 5.3 41 32-78 24-64 (113)
488 2mys_B Myosin; muscle protein, 35.5 1E+02 0.0035 22.9 6.6 57 120-180 18-75 (166)
489 3clo_A Transcriptional regulat 35.5 67 0.0023 27.1 6.0 42 31-79 195-236 (258)
490 3i4p_A Transcriptional regulat 35.1 42 0.0014 26.5 4.3 50 127-184 2-51 (162)
491 1ust_A Histone H1; DNA binding 35.1 70 0.0024 23.7 5.3 58 33-90 6-71 (93)
492 1fp2_A Isoflavone O-methyltran 35.1 58 0.002 28.6 5.7 47 38-88 38-87 (352)
493 1uly_A Hypothetical protein PH 34.8 91 0.0031 25.6 6.6 50 125-183 17-66 (192)
494 1qzz_A RDMB, aclacinomycin-10- 34.8 59 0.002 28.5 5.7 45 38-88 38-82 (374)
495 3i53_A O-methyltransferase; CO 34.6 65 0.0022 27.8 5.9 46 37-88 26-71 (332)
496 2hqr_A Putative transcriptiona 34.5 31 0.001 27.6 3.5 44 33-79 143-191 (223)
497 2kz2_A Calmodulin, CAM; TR2C, 34.5 1.1E+02 0.0038 21.2 6.3 36 139-177 42-77 (94)
498 3kz3_A Repressor protein CI; f 34.4 32 0.0011 23.5 3.1 35 41-77 13-47 (80)
499 2ra5_A Putative transcriptiona 34.4 11 0.00036 32.4 0.6 32 55-88 42-73 (247)
500 2v9v_A Selenocysteine-specific 34.4 51 0.0017 24.8 4.6 41 50-90 84-124 (135)
No 1
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=99.91 E-value=7.7e-25 Score=168.81 Aligned_cols=84 Identities=27% Similarity=0.488 Sum_probs=81.2
Q ss_pred cCCCCCCCCCCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEec
Q 025493 23 KRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAV 102 (252)
Q Consensus 23 ~~~~~~~~~~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~ 102 (252)
++++.+.+..+||++|.+||++|++ +|++|||+++|++++ ||++++++++|+.||+|||||+++++++++||+||||
T Consensus 7 ~~~~~~~k~~~Lt~~q~~Vl~~I~~-~g~~gi~qkeLa~~~--~l~~~tvt~iLk~LE~kglIkr~~~~~~~~rKvy~Ly 83 (91)
T 2dk5_A 7 GDSQNAGKMKGSDNQEKLVYQIIED-AGNKGIWSRDVRYKS--NLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLY 83 (91)
T ss_dssp CCCCCCCCCCCSCSSHHHHHHHHHH-HCTTCEEHHHHHHHT--TCCHHHHHHHHHHHHHTTSEEEECCSSCSSCCEEEES
T ss_pred cCHHHHhhhcCCCHHHHHHHHHHHH-cCCCCcCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEEecCCCCCCcEEEEEe
Confidence 4678888999999999999999999 999999999999999 9999999999999999999999999999999999999
Q ss_pred ccccCCC
Q 025493 103 EFEPSKD 109 (252)
Q Consensus 103 ~lePs~e 109 (252)
+|+||+|
T Consensus 84 ~l~Ps~e 90 (91)
T 2dk5_A 84 NLSGPSS 90 (91)
T ss_dssp SSCCCCC
T ss_pred ccCcCCC
Confidence 9999987
No 2
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=1.2e-23 Score=163.64 Aligned_cols=74 Identities=28% Similarity=0.535 Sum_probs=70.5
Q ss_pred ccccCCCCCCCCCCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCe
Q 025493 20 SKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGK 96 (252)
Q Consensus 20 ~~~~~~~~~~~~~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~r 96 (252)
.++++++.+.+.++||++|++||++|++ |||+|||++||++++ |||+++|+|+||.||+++|||+|+||++|+|
T Consensus 21 ~~~~~~~~a~k~~~Lt~~E~lVy~~I~~-aGn~GIw~kdL~~~t--nL~~~~vtkiLK~LE~k~lIK~Vksv~~~~~ 94 (95)
T 2yu3_A 21 YRIKDSQNAGKMKGSDNQEKLVYQIIED-AGNKGIWSRDVRYKS--NLPLTEINKILKNLESKKLIKAVKSVSGPSS 94 (95)
T ss_dssp EEECCSSSCCCCCSCSHHHHHHHHHHHH-HTTSCEEHHHHHHHH--TCCHHHHHHHHHHHHHHTSEEEECCSCSSSC
T ss_pred EEEeCHHHHhhhcCCCHHHHHHHHHHHH-hCCCCCCHHHHHHHh--CCCHHHHHHHHHHHHhCCCEEEecCccCCCC
Confidence 4457888899999999999999999999 999999999999999 9999999999999999999999999999886
No 3
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=98.09 E-value=8.7e-05 Score=57.34 Aligned_cols=65 Identities=15% Similarity=0.235 Sum_probs=54.0
Q ss_pred CCCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhc--CCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEe
Q 025493 31 SDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKV--NLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMA 101 (252)
Q Consensus 31 ~~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~--~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL 101 (252)
..+||+.|..|+.+|-+ .| |+.+++|..+++. ++..+.++++|+.||+||+|...++ ..+++|.+
T Consensus 5 ~~~Lt~~q~~vL~~L~~-~~--~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~~---~r~~~~~~ 71 (126)
T 1sd4_A 5 QVEISMAEWDVMNIIWD-KK--SVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKS---ENIYFYSS 71 (126)
T ss_dssp CCCCCHHHHHHHHHHHH-SS--SEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEE---TTEEEEEE
T ss_pred CCCCCHHHHHHHHHHHh-cC--CCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEeC---CCeEEEEE
Confidence 45799999999999999 65 7999999999932 2689999999999999999999875 34555543
No 4
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=98.08 E-value=5.7e-05 Score=58.76 Aligned_cols=65 Identities=18% Similarity=0.325 Sum_probs=56.8
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeE
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHL 99 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~Y 99 (252)
.+||..|..|+..|.. .|+.|+..++|...+ +++...++++|+.||++|||...++-..+..+.+
T Consensus 27 ~~lt~~~~~vL~~l~~-~~~~~~t~~ela~~l--~~~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~ 91 (139)
T 3eco_A 27 FDITNEQGHTLGYLYA-HQQDGLTQNDIAKAL--QRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNI 91 (139)
T ss_dssp GTCCHHHHHHHHHHHH-STTTCEEHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEE
T ss_pred cCCCHHHHHHHHHHHh-cCCCCcCHHHHHHHh--CCCcccHHHHHHHHHHCCCEeecCCCCCCCeeee
Confidence 4799999999999999 998999999999999 9999999999999999999999887765333333
No 5
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=97.90 E-value=6.2e-05 Score=66.66 Aligned_cols=147 Identities=12% Similarity=0.093 Sum_probs=98.8
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEecccccC----
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPS---- 107 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~~lePs---- 107 (252)
-+||..|..|+..|.+ .|+.|+.+++|..++ ++....++++|+.||++|||....+-+. .|.+++- |+|.
T Consensus 30 ~~lt~~q~~vL~~L~~-~~~~~~~~~el~~~l--~~~~~t~t~~l~rLe~~G~i~R~~~~~D-rR~~~i~--LT~~G~~~ 103 (250)
T 1p4x_A 30 VDMTIKEFILLTYLFH-QQENTLPFKKIVSDL--CYKQSDLVQHIKVLVKHSYISKVRSKID-ERNTYIS--ISEEQREK 103 (250)
T ss_dssp CSSCHHHHHHHHHHHS-CSCSEEEHHHHHHHS--SSCGGGTHHHHHHHHHTTSCEEEECSSS-TTSEEEE--CCHHHHHH
T ss_pred cCCCHHHHHHHHHHHh-cCCCCcCHHHHHHHH--CCCHhhHHHHHHHHHHCCCEEecCCCCC-CCeEEEE--ECHHHHHH
Confidence 3799999999999999 999999999999999 9999999999999999999999998876 3444432 1111
Q ss_pred --------CCccCCccccCCcCC---------HHHH---HHHHHHHHHHhhhCCCCCHHH--HHHHHHHcC---Ccc---
Q 025493 108 --------KDISGGAWYSEGSLD---------TEFI---KVVKSQCLKQIIKLKVATLEG--ISDSIKRSG---AFK--- 159 (252)
Q Consensus 108 --------~eiTGG~wy~d~e~D---------~efV---~~l~~~~~~~i~~~~~~T~~~--I~~~i~~~~---i~~--- 159 (252)
.+.- -.|+.+ ++| ..|. ..+.+..-.++.. ...|..+ |+.+|...+ ++.
T Consensus 104 ~~~~~~~~~~~~-eq~s~E-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~gLt~~q~~vL~~L~~~~~~~~t~~eL 180 (250)
T 1p4x_A 104 IAERVTLFDQII-KQFNLA-DQSESQMIPKDSKEFLNLMMYTMYFKNIIKKH-LTLSFVEFTILAIITSQNKNIVLLKDL 180 (250)
T ss_dssp HHHHHHHHHHHH-HHHHHH-TTCCSSCSCCSHHHHHHHHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHTTTTCCEEHHHH
T ss_pred HHHHHHHHHHHH-HHHhcc-cccccccchHHHHHHHHHHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHhCCCCCcCHHHH
Confidence 0011 222222 332 1111 1111111122222 2345444 566666553 332
Q ss_pred ---eecCHHHHHHHHHHHhhcCeeEEEeeCC
Q 025493 160 ---VDLTKQQIEEIVRAVVLDNQIMEVKSNG 187 (252)
Q Consensus 160 ---~~Ls~~di~~IL~tLVyDgkIE~v~~~g 187 (252)
..++...+-.+|+.|+-.|.|++.+...
T Consensus 181 a~~l~i~~~tvt~~v~rLe~~GlV~R~~~~~ 211 (250)
T 1p4x_A 181 IETIHHKYPQTVRALNNLKKQGYLIKERSTE 211 (250)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHTSSEEEECSS
T ss_pred HHHHCCChhhHHHHHHHHHHCCCEEeeCCCC
Confidence 4567889999999999999999988543
No 6
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=97.83 E-value=9.7e-05 Score=57.31 Aligned_cols=60 Identities=18% Similarity=0.298 Sum_probs=55.0
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccC
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNK 94 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~ 94 (252)
.+|+..|..|+..|.. .|+.|+..++|...+ +++...++++|+.||++|||...++-..+
T Consensus 30 ~~lt~~~~~iL~~l~~-~~~~~~~~~ela~~l--~~~~~tvs~~l~~Le~~Gli~r~~~~~d~ 89 (141)
T 3bro_A 30 YDLTGTQMTIIDYLSR-NKNKEVLQRDLESEF--SIKSSTATVLLQRMEIKKLLYRKVSGKDS 89 (141)
T ss_dssp TTCCHHHHHHHHHHHH-TTTSCCBHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred cCCCHHHHHHHHHHHH-CCCCCcCHHHHHHHH--CCCcchHHHHHHHHHHCCCEEeeCCCcCC
Confidence 3699999999999999 888899999999999 99999999999999999999998776553
No 7
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=97.81 E-value=0.00021 Score=56.93 Aligned_cols=56 Identities=23% Similarity=0.310 Sum_probs=50.2
Q ss_pred CCCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcC----CChHHHHHHHHHHHhcCCeeeeec
Q 025493 31 SDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVN----LPDNIVTKSIKSLQNKSLIKEVVN 90 (252)
Q Consensus 31 ~~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~----l~~~~l~k~lK~Le~k~lIK~vks 90 (252)
+.+||..|..|+.+|-+ . +.++..++|...+ + +..+.|++.|+.||.+|+|...++
T Consensus 4 ~~~lt~~e~~vL~~L~~-~-~~~~t~~el~~~l--~~~~~~~~~Tvt~~l~rLe~kGlv~r~~~ 63 (138)
T 2g9w_A 4 LTRLGDLERAVMDHLWS-R-TEPQTVRQVHEAL--SARRDLAYTTVMAVLQRLAKKNLVLQIRD 63 (138)
T ss_dssp GGGCCHHHHHHHHHHHT-C-SSCEEHHHHHHHH--TTTCCCCHHHHHHHHHHHHHTTSEEEEC-
T ss_pred cccCCHHHHHHHHHHHh-c-CCCCCHHHHHHHH--hccCCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 45799999999999988 6 4589999999999 6 899999999999999999999874
No 8
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=97.81 E-value=0.00025 Score=56.89 Aligned_cols=65 Identities=8% Similarity=0.070 Sum_probs=56.5
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEe
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMA 101 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL 101 (252)
.+|+..|..|+..|.. .| |+..++|...+ +++...++++|+.||++|||...++-..+..+.+-|
T Consensus 42 ~glt~~q~~iL~~l~~-~~--~~t~~eLa~~l--~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~L 106 (162)
T 3k0l_A 42 LEISLPQFTALSVLAA-KP--NLSNAKLAERS--FIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTV 106 (162)
T ss_dssp TTCCHHHHHHHHHHHH-CT--TCCHHHHHHHH--TSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEE
T ss_pred cCCCHHHHHHHHHHHH-CC--CCCHHHHHHHH--CCCHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEE
Confidence 4799999999999998 66 89999999999 999999999999999999999998877644444433
No 9
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=97.75 E-value=0.00027 Score=54.49 Aligned_cols=56 Identities=11% Similarity=0.132 Sum_probs=51.5
Q ss_pred CCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeecccc
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~ 93 (252)
+|+..|..|+..|.+ .| ++-.++|...+ ++++..++++|+.||++|+|....+-..
T Consensus 35 ~l~~~~~~iL~~l~~-~~--~~t~~ela~~l--~~~~~tvs~~l~~L~~~glv~r~~~~~d 90 (140)
T 2nnn_A 35 GLTPTQWAALVRLGE-TG--PCPQNQLGRLT--AMDAATIKGVVERLDKRGLIQRSADPDD 90 (140)
T ss_dssp CCCHHHHHHHHHHHH-HS--SBCHHHHHHHT--TCCHHHHHHHHHHHHHTTCEEEEEETTE
T ss_pred CCCHHHHHHHHHHHH-cC--CCCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEeeCCCCC
Confidence 899999999999988 66 89999999999 9999999999999999999998776554
No 10
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=97.75 E-value=0.00042 Score=55.27 Aligned_cols=65 Identities=11% Similarity=0.207 Sum_probs=54.1
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEe
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMA 101 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL 101 (252)
.+|+..|..|+..|.+ .| |+..++|...+ +++...++++|+.||++|+|...++-..+..+.|-|
T Consensus 48 ~~lt~~~~~iL~~l~~-~~--~~t~~ela~~l--~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~l 112 (162)
T 3cjn_A 48 LGLSTAKMRALAILSA-KD--GLPIGTLGIFA--VVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYL 112 (162)
T ss_dssp HTCCHHHHHHHHHHHH-SC--SEEHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEE
T ss_pred cCCCHHHHHHHHHHHH-CC--CCCHHHHHHHH--CCChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEE
Confidence 3699999999999988 65 79999999999 999999999999999999999987765544444333
No 11
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=97.75 E-value=0.00041 Score=54.39 Aligned_cols=57 Identities=11% Similarity=0.205 Sum_probs=51.5
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeecccc
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~ 93 (252)
.+|+..|..|+..|.. .| ++-.++|...+ ++++..++++|+.||++|||...++-..
T Consensus 38 ~~l~~~~~~iL~~l~~-~~--~~t~~ela~~l--~~~~~tvs~~l~~Le~~Glv~r~~~~~d 94 (150)
T 2rdp_A 38 YPITPPQFVALQWLLE-EG--DLTVGELSNKM--YLACSTTTDLVDRMERNGLVARVRDEHD 94 (150)
T ss_dssp SSSCHHHHHHHHHHHH-HC--SBCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEECCC-
T ss_pred CCCCHHHHHHHHHHHH-cC--CCCHHHHHHHH--CCCchhHHHHHHHHHHCCCeeecCCCCC
Confidence 4799999999999998 65 79999999999 9999999999999999999999876654
No 12
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=97.75 E-value=0.00039 Score=54.58 Aligned_cols=63 Identities=14% Similarity=0.255 Sum_probs=54.7
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeE
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHL 99 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~Y 99 (252)
.+|+..|..|+..|.. .| |+-.++|...+ +++...++++|+.||++|+|...++-..+..+.+
T Consensus 36 ~~lt~~~~~iL~~l~~-~~--~~t~~ela~~l--~~~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~ 98 (152)
T 3bj6_A 36 EGVTVGQRAILEGLSL-TP--GATAPQLGAAL--QMKRQYISRILQEVQRAGLIERRTNPEHARSHRY 98 (152)
T ss_dssp TTCCHHHHHHHHHHHH-ST--TEEHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEE
T ss_pred cCCCHHHHHHHHHHHh-CC--CCCHHHHHHHH--CCCHHHHHHHHHHHHHCCCeeecCCcccccceee
Confidence 3699999999999998 66 89999999999 9999999999999999999999877655433333
No 13
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=97.74 E-value=0.00073 Score=51.80 Aligned_cols=62 Identities=13% Similarity=0.151 Sum_probs=53.4
Q ss_pred CCCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcC----CChHHHHHHHHHHHhcCCeeeeeccccCCeeeEE
Q 025493 31 SDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVN----LPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLM 100 (252)
Q Consensus 31 ~~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~----l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~Ym 100 (252)
..+|+..|..|+.+|.+ . .++..++|...+ + ++.+.++++|+.||++|||...++ ..+.+|+
T Consensus 5 ~~~lt~~~~~vL~~l~~-~--~~~t~~ela~~l--~~~~~~s~~tv~~~l~~L~~~Glv~r~~~---~rr~~~~ 70 (123)
T 1okr_A 5 TYEISSAEWEVMNIIWM-K--KYASANNIIEEI--QMQKDWSPKTIRTLITRLYKKGFIDRKKD---NKIFQYY 70 (123)
T ss_dssp CCCCCHHHHHHHHHHHH-H--SSEEHHHHHHHH--HHHCCCCHHHHHHHHHHHHHHTSEEEEEE---TTEEEEE
T ss_pred cccCCHHHHHHHHHHHh-C--CCcCHHHHHHHH--hccCCCcHhhHHHHHHHHHHCCCeEEEec---CCeEEEE
Confidence 56899999999999988 4 479999999999 6 889999999999999999999876 3455553
No 14
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=97.73 E-value=0.00036 Score=53.78 Aligned_cols=63 Identities=6% Similarity=0.082 Sum_probs=54.4
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeE
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHL 99 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~Y 99 (252)
.+|+..|..|+..|.+ .| ++-.++|...+ ++++..++++|+.||++|+|...++-..+..+.|
T Consensus 29 ~~l~~~~~~iL~~l~~-~~--~~~~~ela~~l--~~~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~ 91 (139)
T 3bja_A 29 YDISYVQFGVIQVLAK-SG--KVSMSKLIENM--GCVPSNMTTMIQRMKRDGYVMTEKNPNDQRETLV 91 (139)
T ss_dssp GTCCHHHHHHHHHHHH-SC--SEEHHHHHHHC--SSCCTTHHHHHHHHHHTTSEEEEECSSCTTCEEE
T ss_pred cCCCHHHHHHHHHHHH-cC--CcCHHHHHHHH--CCChhHHHHHHHHHHHCCCeeeccCCCCCceeEE
Confidence 3699999999999988 55 79999999999 9999999999999999999999877665434333
No 15
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=97.73 E-value=9.3e-05 Score=58.38 Aligned_cols=59 Identities=19% Similarity=0.283 Sum_probs=45.8
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeecccc
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~ 93 (252)
.+|+..|..|+..|.. .++.|+..++|...+ +++...++++|+.||++|||...++-..
T Consensus 37 ~glt~~q~~vL~~l~~-~~~~~~t~~eLa~~l--~~~~~~vs~~l~~L~~~Glv~r~~~~~D 95 (148)
T 3jw4_A 37 LGLNSQQGRMIGYIYE-NQESGIIQKDLAQFF--GRRGASITSMLQGLEKKGYIERRIPENN 95 (148)
T ss_dssp TTCCHHHHHHHHHHHH-HTTTCCCHHHHHHC--------CHHHHHHHHHHTTSBCCC-----
T ss_pred CCCCHHHHHHHHHHHh-CCCCCCCHHHHHHHH--CCChhHHHHHHHHHHHCCCEEeeCCCCC
Confidence 4799999999999999 888899999999999 9999999999999999999999877655
No 16
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=97.72 E-value=0.00037 Score=54.42 Aligned_cols=65 Identities=14% Similarity=0.132 Sum_probs=53.4
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEe
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMA 101 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL 101 (252)
.+|+..|..|+..|.. . .|+..++|...+ +++...++++|+.||++|||...++-..+..+.+-|
T Consensus 33 ~~lt~~~~~iL~~l~~-~--~~~t~~eLa~~l--~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~L 97 (143)
T 3oop_A 33 YDVTPEQWSVLEGIEA-N--EPISQKEIALWT--KKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSL 97 (143)
T ss_dssp SSSCHHHHHHHHHHHH-H--SSEEHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEE
T ss_pred CCCCHHHHHHHHHHHH-c--CCcCHHHHHHHH--CCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeE
Confidence 4799999999999998 5 689999999999 999999999999999999999988776644444433
No 17
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=97.72 E-value=0.00036 Score=54.90 Aligned_cols=62 Identities=21% Similarity=0.252 Sum_probs=53.9
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCe
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGK 96 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~r 96 (252)
-+|++.|..||.++.+ .+...+...+|..++ +++.+++.|.|+.|+++|+|...+....++.
T Consensus 22 ~gLt~~e~~il~~L~~-~~~~~~t~~eLa~~l--~~s~sTV~r~L~~L~~~GlV~r~~~~~d~~~ 83 (123)
T 3r0a_A 22 LNLTKADLNVMKSFLN-EPDRWIDTDALSKSL--KLDVSTVQRSVKKLHEKEILQRSQQNLDGGG 83 (123)
T ss_dssp HTCCHHHHHHHHHHHH-STTCCEEHHHHHHHH--TSCHHHHHHHHHHHHHTTSEEEEEEECTTSC
T ss_pred cCCCHHHHHHHHHHHH-CCCCCcCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEeeCCccCCCc
Confidence 4799999999999998 765449999999999 9999999999999999999999876554443
No 18
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=97.70 E-value=0.0002 Score=55.99 Aligned_cols=58 Identities=19% Similarity=0.393 Sum_probs=45.6
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccC
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNK 94 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~ 94 (252)
-+|+..|..|+..|.. .| |+..++|...+ +++...++++|+.||++|||...++-..+
T Consensus 33 ~~lt~~~~~vL~~l~~-~~--~~t~~eLa~~l--~~~~~tvs~~l~~L~~~Glv~r~~~~~Dr 90 (142)
T 3ech_A 33 LDLTPPDVHVLKLIDE-QR--GLNLQDLGRQM--CRDKALITRKIRELEGRNLVRRERNPSDQ 90 (142)
T ss_dssp CCCCHHHHHHHHHHHH-TT--TCCHHHHHHHH--C---CHHHHHHHHHHHTTSEEC-------
T ss_pred CCCCHHHHHHHHHHHh-CC--CcCHHHHHHHh--CCCHHHHHHHHHHHHHCCCEeeccCCCCC
Confidence 4799999999999999 66 89999999999 99999999999999999999998776653
No 19
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=97.70 E-value=0.00032 Score=56.23 Aligned_cols=63 Identities=6% Similarity=0.149 Sum_probs=53.0
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeE
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHL 99 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~Y 99 (252)
.+|+..|..|+..|.. .| |+..++|...+ +++...++++|+.||++|||...++-..+..+.+
T Consensus 49 ~glt~~q~~vL~~l~~-~~--~~t~~eLa~~l--~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~ 111 (161)
T 3e6m_A 49 EKLPTPKLRLLSSLSA-YG--ELTVGQLATLG--VMEQSTTSRTVDQLVDEGLAARSISDADQRKRTV 111 (161)
T ss_dssp HTCCHHHHHHHHHHHH-HS--EEEHHHHHHHT--TCCHHHHHHHHHHHHHTTSEEECC---CCCSCEE
T ss_pred cCCCHHHHHHHHHHHh-CC--CCCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEe
Confidence 3689999999999998 76 89999999999 9999999999999999999999887665433333
No 20
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=97.70 E-value=0.00034 Score=55.55 Aligned_cols=63 Identities=11% Similarity=0.146 Sum_probs=54.6
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeE
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHL 99 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~Y 99 (252)
.+|+..|..|+..|.+ .| ++..++|...+ ++++..++++|+.||++|+|...++-..+..+.|
T Consensus 40 ~~lt~~~~~iL~~l~~-~~--~~t~~ela~~l--~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~ 102 (154)
T 2eth_A 40 SDMKTTELYAFLYVAL-FG--PKKMKEIAEFL--STTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRV 102 (154)
T ss_dssp HHSBHHHHHHHHHHHH-HC--CBCHHHHHHHT--TSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEE
T ss_pred cCCCHHHHHHHHHHHH-cC--CCCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEeeCCCCCcceeEE
Confidence 3689999999999998 66 79999999999 9999999999999999999999877665434333
No 21
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=97.68 E-value=0.00048 Score=55.79 Aligned_cols=57 Identities=11% Similarity=0.114 Sum_probs=52.1
Q ss_pred CCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccC
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNK 94 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~ 94 (252)
+|+..|..|+..|.+ .| |+-.++|...+ +++...++++|+.||++|||...++-..+
T Consensus 42 ~lt~~~~~iL~~L~~-~~--~~t~~eLa~~l--~is~~tvs~~l~~Le~~GlV~r~~~~~Dr 98 (168)
T 2nyx_A 42 NITIPQFRTLVILSN-HG--PINLATLATLL--GVQPSATGRMVDRLVGAELIDRLPHPTSR 98 (168)
T ss_dssp SCCHHHHHHHHHHHH-HC--SEEHHHHHHHH--TSCHHHHHHHHHHHHHTTSEEEEECSSCS
T ss_pred CCCHHHHHHHHHHHH-cC--CCCHHHHHHHh--CCCHHHHHHHHHHHHHCCCEEeccCCCCC
Confidence 799999999999988 65 79999999999 99999999999999999999998776553
No 22
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=97.67 E-value=0.00028 Score=55.28 Aligned_cols=64 Identities=13% Similarity=0.163 Sum_probs=50.5
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEE
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLM 100 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~Ym 100 (252)
.+|+..|..|+..|.+ . .|+..++|...+ +++...++++|+.||++|||...++-..+..+.+-
T Consensus 32 ~glt~~q~~vL~~l~~-~--~~~t~~eLa~~l--~~~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~ 95 (140)
T 3hsr_A 32 YDLTYTGYIVLMAIEN-D--EKLNIKKLGERV--FLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQIS 95 (140)
T ss_dssp GTCCHHHHHHHHHSCT-T--CEEEHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEC-------CEEE
T ss_pred cCCCHHHHHHHHHHHH-c--CCcCHHHHHHHH--CCChhhHHHHHHHHHHCCCeEecCCCCCcceeeee
Confidence 3799999999988876 4 489999999999 99999999999999999999998887664444443
No 23
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=97.67 E-value=0.0011 Score=53.42 Aligned_cols=59 Identities=12% Similarity=0.189 Sum_probs=53.0
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccC
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNK 94 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~ 94 (252)
-+||..|..|+..|.. +|. |+-+++|...+ ++....++++|+.||++|||...++-..+
T Consensus 27 ~gLt~~q~~vL~~L~~-~~~-~~~~~eLa~~l--~~~~~tvs~~v~~Le~~GlV~R~~~~~Dr 85 (151)
T 4aik_A 27 LELTQTHWVTLYNINR-LPP-EQSQIQLAKAI--GIEQPSLVRTLDQLEEKGLITRHTSANDR 85 (151)
T ss_dssp GCCCHHHHHHHHHHHH-SCT-TSCHHHHHHHH--TSCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred cCCCHHHHHHHHHHHH-cCC-CCcHHHHHHHH--CcCHHHHHHHHHHHHhCCCeEeecCCCCC
Confidence 4799999999999987 654 78889999999 99999999999999999999999887763
No 24
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=97.66 E-value=0.00074 Score=52.39 Aligned_cols=57 Identities=11% Similarity=0.240 Sum_probs=50.4
Q ss_pred CCCChHHHHHHHHH-HhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeecccc
Q 025493 32 DSLTDHERLIYDVI-RSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93 (252)
Q Consensus 32 ~~l~~~e~~vy~~I-~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~ 93 (252)
.+|+..|..|+..| .. +.++..++|...+ +++++.++++|+.||++|||...++-..
T Consensus 33 ~~l~~~~~~iL~~l~~~---~~~~t~~~la~~l--~~s~~~vs~~l~~L~~~glv~r~~~~~d 90 (146)
T 2fbh_A 33 LGLSQARWLVLLHLARH---RDSPTQRELAQSV--GVEGPTLARLLDGLESQGLVRRLAVAED 90 (146)
T ss_dssp GCCTTTHHHHHHHHHHC---SSCCBHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEECCBTT
T ss_pred CCCCHHHHHHHHHHHHc---CCCCCHHHHHHHh--CCChhhHHHHHHHHHHCCCeeecCCCcc
Confidence 36899999999999 44 3579999999999 9999999999999999999999876654
No 25
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=97.64 E-value=7.2e-05 Score=59.59 Aligned_cols=72 Identities=11% Similarity=0.074 Sum_probs=55.3
Q ss_pred CCCChHHHHHHHHHHhhc---CCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEecccccC
Q 025493 32 DSLTDHERLIYDVIRSNK---QDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPS 107 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~a---g~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~~lePs 107 (252)
-+|++.|..||-.|.. . |+.++...+|..++ ++..++|+++|+.||++|+|....+-... .++.-.|+|.|-
T Consensus 28 lgLt~~e~~vll~L~~-~~~~~~~~ps~~~LA~~l--~~s~~~V~~~l~~Le~kGlI~~~~~~~~~-g~~~~~Ydl~pl 102 (128)
T 2vn2_A 28 LGLGEGELVLLLHMQS-FFEEGVLFPTPAELAERM--TVSAAECMEMVRRLLQKGMIAIEEHTDEQ-GIRNEKYTLEPL 102 (128)
T ss_dssp TTCCHHHHHHHHHHHH-HHTTTCSSCCHHHHHHTS--SSCHHHHHHHHHHHHHTTSSEECC-----------CEECHHH
T ss_pred cCCCHHHHHHHHHHHH-HHhcCCCCCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEEeEECCC-CcEEEEEehHHH
Confidence 3799999999999986 4 67779999999999 99999999999999999999997665543 455567787664
No 26
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=97.62 E-value=0.0002 Score=56.73 Aligned_cols=63 Identities=17% Similarity=0.186 Sum_probs=49.2
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeE
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHL 99 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~Y 99 (252)
.+|+..|..|+..|.. . .|+..++|...+ +++...++++|+.||++|||...++-..+..+.+
T Consensus 37 ~~lt~~q~~iL~~l~~-~--~~~~~~eLa~~l--~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~ 99 (149)
T 4hbl_A 37 FGITYSQYLVMLTLWE-E--NPQTLNSIGRHL--DLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLII 99 (149)
T ss_dssp TTCCHHHHHHHHHHHH-S--SSEEHHHHHHHH--TCCHHHHHHHHHHHHHHTSEEC---------CEE
T ss_pred cCCCHHHHHHHHHHHH-C--CCCCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeee
Confidence 4799999999999988 5 689999999999 9999999999999999999999887765433333
No 27
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=97.62 E-value=0.00084 Score=54.54 Aligned_cols=66 Identities=12% Similarity=0.186 Sum_probs=51.0
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEe
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMA 101 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL 101 (252)
.+|+..|..|+..|.+ ++ .|+..++|...+ +++...++++|+.||++|||...++-..+..+.+-|
T Consensus 49 ~glt~~q~~vL~~L~~-~~-~~~t~~eLa~~l--~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~L 114 (166)
T 3deu_A 49 LELTQTHWVTLHNIHQ-LP-PDQSQIQLAKAI--GIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKL 114 (166)
T ss_dssp TTCCHHHHHHHHHHHH-SC-SSEEHHHHHHHH--TSCHHHHHHHHHHHHHTTSEEEC--------CEEEE
T ss_pred cCCCHHHHHHHHHHHH-cC-CCCCHHHHHHHH--CCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEE
Confidence 4799999999999987 54 579999999999 999999999999999999999988776543333333
No 28
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=97.61 E-value=0.00072 Score=53.21 Aligned_cols=61 Identities=13% Similarity=0.244 Sum_probs=53.2
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCee
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKK 97 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK 97 (252)
.+|+..|..|+..|.. .| |+-.++|...+ ++++..++++|+.||++|||....+-..+..+
T Consensus 33 ~~l~~~~~~iL~~l~~-~~--~~t~~ela~~l--~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~ 93 (155)
T 1s3j_A 33 QGVTPAQLFVLASLKK-HG--SLKVSEIAERM--EVKPSAVTLMADRLEQKNLIARTHNTKDRRVI 93 (155)
T ss_dssp TTCCHHHHHHHHHHHH-HS--EEEHHHHHHHH--TSCHHHHHHHHHHHHHTTSEEEEECSSCTTSE
T ss_pred cCCCHHHHHHHHHHHH-cC--CCCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEeecCCCCCCceE
Confidence 4799999999999988 55 79999999999 99999999999999999999998776553333
No 29
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=97.61 E-value=0.0005 Score=53.43 Aligned_cols=56 Identities=14% Similarity=0.127 Sum_probs=51.2
Q ss_pred CCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeecccc
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~ 93 (252)
+|+..|..|+..|.. .| |+-.++|...+ +++...++++|+.||++|+|...++-..
T Consensus 30 ~l~~~~~~iL~~l~~-~~--~~~~~~la~~l--~~s~~tvs~~l~~L~~~glv~r~~~~~d 85 (145)
T 2a61_A 30 GITPAQFDILQKIYF-EG--PKRPGELSVLL--GVAKSTVTGLVKRLEADGYLTRTPDPAD 85 (145)
T ss_dssp TCCHHHHHHHHHHHH-HC--CBCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEEETTE
T ss_pred CCCHHHHHHHHHHHH-cC--CCCHHHHHHHH--CCCchhHHHHHHHHHHCCCeeecCCCCC
Confidence 699999999999988 55 79999999999 9999999999999999999999876554
No 30
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=97.60 E-value=0.00064 Score=54.24 Aligned_cols=63 Identities=8% Similarity=0.119 Sum_probs=52.9
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeE
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHL 99 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~Y 99 (252)
.+|+..|..|+..|.. . .|+..++|...+ +++...++++|+.||++|||...++-..+..+.+
T Consensus 46 ~~lt~~q~~vL~~l~~-~--~~~t~~eLa~~l--~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l 108 (159)
T 3s2w_A 46 YGIGSGQFPFLMRLYR-E--DGINQESLSDYL--KIDKGTTARAIQKLVDEGYVFRQRDEKDRRSYRV 108 (159)
T ss_dssp GTCCTTTHHHHHHHHH-S--CSEEHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEECC---CCEEE
T ss_pred cCCCHHHHHHHHHHHH-C--CCCCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEEecCCCCCCeeEE
Confidence 4789999999999988 5 579999999999 9999999999999999999999888766433333
No 31
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=97.58 E-value=0.00017 Score=56.44 Aligned_cols=59 Identities=20% Similarity=0.278 Sum_probs=54.7
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeecccc
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~ 93 (252)
-+|+..|..|+..|.. .+..|+-.++|...+ +++...++++|+.||++|||...++-..
T Consensus 33 ~~lt~~q~~vL~~l~~-~~~~~~t~~eLa~~l--~~~~~tvs~~l~~Le~~Glv~r~~~~~D 91 (127)
T 2frh_A 33 FSISFEEFAVLTYISE-NKEKEYYLKDIINHL--NYKQPQVVKAVKILSQEDYFDKKRNEHD 91 (127)
T ss_dssp TCCCHHHHHHHHHHHH-TCCSEEEHHHHHHHS--SSHHHHHHHHHHHHHHTTSSCCBCCSSS
T ss_pred cCCCHHHHHHHHHHHh-ccCCCcCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEecCCCCC
Confidence 4799999999999999 877899999999999 9999999999999999999999877665
No 32
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=97.58 E-value=0.00053 Score=54.52 Aligned_cols=58 Identities=9% Similarity=0.177 Sum_probs=47.6
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccC
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNK 94 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~ 94 (252)
-+|+..|..|+..|.. .| |+-.++|...+ +++...++++|+.||++|||...++-..+
T Consensus 45 ~~lt~~~~~iL~~l~~-~~--~~t~~ela~~l--~is~~tvs~~l~~Le~~glv~r~~~~~d~ 102 (162)
T 2fa5_A 45 YGMAIPEWRVITILAL-YP--GSSASEVSDRT--AMDKVAVSRAVARLLERGFIRRETHGDDR 102 (162)
T ss_dssp HCCCHHHHHHHHHHHH-ST--TCCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEC-------
T ss_pred cCCCHHHHHHHHHHHh-CC--CCCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEeeecCCCCC
Confidence 3699999999999988 54 89999999999 99999999999999999999987765543
No 33
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=97.57 E-value=0.0007 Score=52.64 Aligned_cols=61 Identities=18% Similarity=0.245 Sum_probs=53.0
Q ss_pred CCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeee
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKH 98 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~ 98 (252)
+|+..|..|+..|.. .| ++-.++|...+ +++++.++++|+.||++|+|...++-..+..+.
T Consensus 34 ~l~~~~~~iL~~l~~-~~--~~~~~ela~~l--~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~ 94 (142)
T 2bv6_A 34 NLTYPQFLVLTILWD-ES--PVNVKKVVTEL--ALDTGTVSPLLKRMEQVDLIKRERSEVDQREVF 94 (142)
T ss_dssp TCCHHHHHHHHHHHH-SS--EEEHHHHHHHT--TCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEE
T ss_pred CCCHHHHHHHHHHHH-cC--CcCHHHHHHHH--CCChhhHHHHHHHHHHCCCEEeecCCCCcceEE
Confidence 689999999999988 65 79999999999 999999999999999999999987655433333
No 34
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=97.55 E-value=0.00014 Score=58.74 Aligned_cols=59 Identities=19% Similarity=0.200 Sum_probs=52.4
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeecccc
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~ 93 (252)
.+|+..|..|+.+|.. .|+.|+..++|...+ ++....++++|+.||++|||....+-..
T Consensus 42 ~glt~~q~~vL~~l~~-~~~~~~t~~eLa~~l--~~~~~tvs~~l~~Le~~Glv~r~~~~~D 100 (168)
T 3u2r_A 42 FELSAQQYNTLRLLRS-VHPEGMATLQIADRL--ISRAPDITRLIDRLDDRGLVLRTRKPEN 100 (168)
T ss_dssp TTCCHHHHHHHHHHHH-HTTSCEEHHHHHHHC-----CTHHHHHHHHHHHTTSEEEEEETTE
T ss_pred cCCCHHHHHHHHHHHh-cCCCCcCHHHHHHHH--CCChhhHHHHHHHHHHCCCEeecCCCCC
Confidence 4799999999999999 999999999999999 9999999999999999999999877665
No 35
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=97.53 E-value=0.00036 Score=54.30 Aligned_cols=63 Identities=21% Similarity=0.262 Sum_probs=54.6
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeE
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHL 99 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~Y 99 (252)
.+|+..|..|+..|.. .| |+..++|...+ +++++.++++|+.||++|+|...++-..+..+.+
T Consensus 25 ~~lt~~~~~iL~~l~~-~~--~~t~~~la~~l--~~s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~ 87 (144)
T 1lj9_A 25 LSLTRGQYLYLVRVCE-NP--GIIQEKIAELI--KVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRI 87 (144)
T ss_dssp GTCTTTHHHHHHHHHH-ST--TEEHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEE
T ss_pred cCCCHHHHHHHHHHHH-Cc--CcCHHHHHHHH--CCCHhHHHHHHHHHHHCCCEEeecCCCCCceeee
Confidence 3689999999999998 65 89999999999 9999999999999999999999887665444333
No 36
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=97.51 E-value=0.0007 Score=53.35 Aligned_cols=59 Identities=10% Similarity=0.218 Sum_probs=47.5
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccC
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNK 94 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~ 94 (252)
.+|+..|..|+.+|.. .+ .++..++|...+ +++...++++|+.||++|||...++-..+
T Consensus 35 ~glt~~q~~vL~~l~~-~~-~~~t~~eLa~~l--~i~~~tvs~~l~~Le~~Glv~r~~~~~D~ 93 (150)
T 3fm5_A 35 TGLRVRSYSVLVLACE-QA-EGVNQRGVAATM--GLDPSQIVGLVDELEERGLVVRTLDPSDR 93 (150)
T ss_dssp GTCCHHHHHHHHHHHH-ST-TCCCSHHHHHHH--TCCHHHHHHHHHHHHTTTSEEC-------
T ss_pred cCCCHHHHHHHHHHHh-CC-CCcCHHHHHHHH--CCCHhHHHHHHHHHHHCCCEEeeCCcccc
Confidence 4789999999999977 44 459999999999 99999999999999999999998776653
No 37
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=97.51 E-value=0.00043 Score=53.49 Aligned_cols=64 Identities=14% Similarity=0.178 Sum_probs=55.5
Q ss_pred CCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEe
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMA 101 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL 101 (252)
+|+..|..|+..|.+ .| ++-.++|...+ ++++..+++.|+.||++|+|...++-..+..+.|-|
T Consensus 28 ~l~~~~~~iL~~l~~-~~--~~~~~ela~~l--~is~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~l 91 (142)
T 3bdd_A 28 GISLTRYSILQTLLK-DA--PLHQLALQERL--QIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWP 91 (142)
T ss_dssp SSCHHHHHHHHHHHH-HC--SBCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEE
T ss_pred CCCHHHHHHHHHHHh-CC--CCCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEE
Confidence 799999999999988 65 69999999999 999999999999999999999988776554444433
No 38
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=97.49 E-value=0.0011 Score=52.86 Aligned_cols=60 Identities=13% Similarity=0.075 Sum_probs=53.6
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccC
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNK 94 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~ 94 (252)
-+||..|..|+.+|.. +.+.++-.++|...+ +++...++++|+.||++|||...++-..+
T Consensus 31 ~gLt~~q~~vL~~L~~-~~~~~~t~~eLa~~l--~~~~~tvs~~v~~Le~~Glv~r~~~~~Dr 90 (147)
T 4b8x_A 31 YGLTFARYEALVLLTF-SKSGELPMSKIGERL--MVHPTSVTNTVDRLVRSGLVAKRPNPNDG 90 (147)
T ss_dssp GTCCHHHHHHHHHHHT-SGGGEEEHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEECC---
T ss_pred cCCCHHHHHHHHHHHH-CCCCCcCHHHHHHHH--CCCHHHHHHHHHHHHhCCCEEEeecCCcC
Confidence 4799999999999988 878889999999999 99999999999999999999999887653
No 39
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=97.48 E-value=0.00048 Score=53.20 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=52.0
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccC
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNK 94 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~ 94 (252)
.+|+..|..|+..|.+ .| |+-.++|...+ +++++.++++|+.||++|+|....+-..+
T Consensus 30 ~~lt~~~~~iL~~l~~-~~--~~~~~~la~~l--~~~~~tvs~~l~~L~~~gli~r~~~~~d~ 87 (138)
T 1jgs_A 30 LDITAAQFKVLCSIRC-AA--CITPVELKKVL--SVDLGALTRMLDRLVCKGWVERLPNPNDK 87 (138)
T ss_dssp TTSCHHHHHHHHHHHH-HS--SBCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEECTTCS
T ss_pred cCCCHHHHHHHHHHHh-cC--CCCHHHHHHHH--CCChHHHHHHHHHHHHCCCEEecCCcccC
Confidence 4799999999999988 55 78999999999 99999999999999999999998766553
No 40
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=97.48 E-value=0.00064 Score=50.12 Aligned_cols=61 Identities=21% Similarity=0.414 Sum_probs=52.4
Q ss_pred CCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEE
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLM 100 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~Ym 100 (252)
+|++.+..|+.+|.. .| ++-.++|...+ +++...++++|+.|+++|+|...+.. .+|..|.
T Consensus 17 ~l~~~~~~il~~l~~-~~--~~s~~ela~~l--~is~~tv~~~l~~L~~~glv~~~~~~--~~r~~~~ 77 (109)
T 1sfx_A 17 SFKPSDVRIYSLLLE-RG--GMRVSEIAREL--DLSARFVRDRLKVLLKRGFVRREIVE--KGWVGYI 77 (109)
T ss_dssp CCCHHHHHHHHHHHH-HC--CBCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEEEE--SSSEEEE
T ss_pred CCCHHHHHHHHHHHH-cC--CCCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEEEeec--CCceEEE
Confidence 689999999999987 54 58999999999 99999999999999999999998766 3444443
No 41
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=97.47 E-value=0.0017 Score=50.35 Aligned_cols=61 Identities=15% Similarity=0.130 Sum_probs=51.9
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeee
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKH 98 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~ 98 (252)
.+|+..|..|+..|. +.|+-.++|...+ +++...++++|+.||++|+|...++-..+..+.
T Consensus 33 ~~l~~~~~~iL~~l~----~~~~~~~ela~~l--~~s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~ 93 (146)
T 2gxg_A 33 LNLSYLDFLVLRATS----DGPKTMAYLANRY--FVTQSAITASVDKLEEMGLVVRVRDREDRRKIL 93 (146)
T ss_dssp TTCCHHHHHHHHHHT----TSCBCHHHHHHHT--TCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEE
T ss_pred cCCCHHHHHHHHHHh----cCCcCHHHHHHHh--CCCchhHHHHHHHHHHCCCEEeecCCCCCceEE
Confidence 368999988888875 5689999999999 999999999999999999999987765533333
No 42
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=97.47 E-value=0.00029 Score=55.28 Aligned_cols=63 Identities=19% Similarity=0.201 Sum_probs=49.9
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeE
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHL 99 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~Y 99 (252)
-+|+..|..|+..|.. .| |+..++|...+ ++++..++++|+.||++|||...++-..+..+.+
T Consensus 36 ~~l~~~~~~iL~~l~~-~~--~~t~~ela~~l--~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~ 98 (148)
T 3nrv_A 36 FGIGMTEWRIISVLSS-AS--DCSVQKISDIL--GLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAI 98 (148)
T ss_dssp GTCCHHHHHHHHHHHH-SS--SBCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEC---------CCB
T ss_pred cCCCHHHHHHHHHHHc-CC--CCCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEeecCCCCcceeEe
Confidence 3799999999999999 77 99999999999 9999999999999999999999877665434333
No 43
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=97.44 E-value=0.00069 Score=53.72 Aligned_cols=57 Identities=9% Similarity=0.141 Sum_probs=47.4
Q ss_pred CCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeecccc
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~ 93 (252)
+|+..|..|+..|.. . +.|+..++|...+ +++...+++.|+.||++|||...++-..
T Consensus 44 ~l~~~~~~iL~~L~~-~-~~~~~~~ela~~l--~i~~~tvs~~l~~Le~~Gli~r~~~~~d 100 (160)
T 3boq_A 44 GLSLAKFDAMAQLAR-N-PDGLSMGKLSGAL--KVTNGNVSGLVNRLIKDGMVVKAMSADD 100 (160)
T ss_dssp SCCHHHHHHHHHHHH-C-TTCEEHHHHHHHC--SSCCSCHHHHHHHHHHHTSEEEC-----
T ss_pred CCCHHHHHHHHHHHH-c-CCCCCHHHHHHHH--CCChhhHHHHHHHHHHCCCEEeecCCCC
Confidence 689999999999954 3 3489999999999 9999999999999999999999876655
No 44
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=97.41 E-value=0.00027 Score=57.32 Aligned_cols=72 Identities=10% Similarity=0.105 Sum_probs=58.3
Q ss_pred CCChHHHHHHHHHHh--hcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEecccccC
Q 025493 33 SLTDHERLIYDVIRS--NKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPS 107 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~--~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~~lePs 107 (252)
+||+.|.+|+-.|.. ..|+.++...+|..++ ++..++|.++|.+|++||+|.-...... +-+..-.|+|+|-
T Consensus 29 gLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~--~~s~~~v~~~L~~L~~KGlI~i~~~~d~-~g~~~~~ydL~pL 102 (135)
T 2v79_A 29 GLNETELILLLKIKMHLEKGSYFPTPNQLQEGM--SISVEECTNRLRMFIQKGFLFIEECEDQ-NGIKFEKYSLQPL 102 (135)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTS--SSCHHHHHHHHHHHHHHTSCEEEEEECT-TCCEEEEEECHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEEeEecC-CCceEEEeeHHHH
Confidence 699999998877776 1378889999999999 9999999999999999999997443333 3445567788664
No 45
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=97.40 E-value=0.00091 Score=48.39 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=49.6
Q ss_pred CCCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhc--CCChHHHHHHHHHHHhcCCeeeeec
Q 025493 31 SDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKV--NLPDNIVTKSIKSLQNKSLIKEVVN 90 (252)
Q Consensus 31 ~~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~--~l~~~~l~k~lK~Le~k~lIK~vks 90 (252)
..+||+.|..|+.+|.+ . .++..++|...++. ++..+.+++.|+.||.+|+|...++
T Consensus 4 ~~~lt~~e~~vL~~L~~-~--~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~~ 62 (82)
T 1p6r_A 4 IPQISDAELEVMKVIWK-H--SSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKE 62 (82)
T ss_dssp CCCCCHHHHHHHHHHHT-S--SSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCCCHHHHHHHHHHHc-C--CCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEec
Confidence 45799999999999987 4 48999999999832 3789999999999999999999864
No 46
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=97.38 E-value=0.00045 Score=54.04 Aligned_cols=65 Identities=15% Similarity=0.189 Sum_probs=55.4
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEe
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMA 101 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL 101 (252)
.+|+..|..|+..|.. .| |+..++|...+ +++...++++|+.||++|||....+-..+..+.+-|
T Consensus 27 ~~lt~~q~~iL~~l~~-~~--~~t~~eLa~~l--~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~L 91 (145)
T 3g3z_A 27 QDLNYNLFAVLYTLAT-EG--SRTQKHIGEKW--SLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSL 91 (145)
T ss_dssp TTCCHHHHHHHHHHHH-HC--SBCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEE
T ss_pred cCCCHHHHHHHHHHHH-CC--CCCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeE
Confidence 4799999999999988 66 59999999999 999999999999999999999987766543444433
No 47
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=97.37 E-value=0.00068 Score=56.31 Aligned_cols=60 Identities=12% Similarity=0.193 Sum_probs=55.5
Q ss_pred CCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCC
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKG 95 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~ 95 (252)
+||..|..|+..|.. ..+.|+-.++|...+ +++...++++|+.||++|||...++-..+.
T Consensus 38 ~lt~~q~~vL~~L~~-~~~~~~t~~eLa~~l--~is~~tvs~~l~~Le~~GlV~r~~~~~DrR 97 (189)
T 3nqo_A 38 ILTSRQYMTILSILH-LPEEETTLNNIARKM--GTSKQNINRLVANLEKNGYVDVIPSPHDKR 97 (189)
T ss_dssp SSCHHHHHHHHHHHH-SCGGGCCHHHHHHHH--TSCHHHHHHHHHHHHHTTSEEEEECSSCSS
T ss_pred cCCHHHHHHHHHHHh-ccCCCcCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEeccCCCCCC
Confidence 599999999999999 888899999999999 999999999999999999999988876643
No 48
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=97.37 E-value=0.00052 Score=53.04 Aligned_cols=57 Identities=9% Similarity=0.207 Sum_probs=51.5
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeecccc
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~ 93 (252)
.+|+..|..|+..|.. .| ++-.++|...+ ++++..++++|+.||++|+|....+-..
T Consensus 32 ~~lt~~~~~iL~~l~~-~~--~~t~~ela~~l--~~s~~~vs~~l~~Le~~glv~r~~~~~d 88 (142)
T 2fbi_A 32 HGLTEQQWRVIRILRQ-QG--EMESYQLANQA--CILRPSMTGVLARLERDGIVRRWKAPKD 88 (142)
T ss_dssp HTCCHHHHHHHHHHHH-HC--SEEHHHHHHHT--TCCHHHHHHHHHHHHHTTSEEEEEETTE
T ss_pred cCCCHHHHHHHHHHHH-cC--CCCHHHHHHHH--CCCHhHHHHHHHHHHHCCCEEeecCCCC
Confidence 3689999999999988 65 69999999999 9999999999999999999999876554
No 49
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=97.35 E-value=0.00071 Score=53.33 Aligned_cols=62 Identities=19% Similarity=0.233 Sum_probs=52.1
Q ss_pred CCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeee--eeccccCCeeeE
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKE--VVNIHNKGKKHL 99 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~--vksv~~~~rK~Y 99 (252)
+|+..|..|+..|.. .| |+-.++|...+ ++++..++++|+.||++|||.. .++-..+..+.+
T Consensus 38 ~lt~~~~~iL~~l~~-~~--~~t~~eLa~~l--~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~ 101 (154)
T 2qww_A 38 GLTIQQLAMINVIYS-TP--GISVADLTKRL--IITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTL 101 (154)
T ss_dssp TCCHHHHHHHHHHHH-ST--TEEHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEE
T ss_pred CCCHHHHHHHHHHHH-CC--CCCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEe
Confidence 689999999999998 64 69999999999 9999999999999999999998 776655433333
No 50
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=97.35 E-value=0.00042 Score=54.14 Aligned_cols=64 Identities=14% Similarity=0.183 Sum_probs=55.0
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEE
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLM 100 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~Ym 100 (252)
.+|+..|..|+..|.. .| ++-.++|...+ ++++..++++|+.||++|||...++-..+..+.+.
T Consensus 36 ~~l~~~~~~iL~~l~~-~~--~~~~~~la~~l--~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~ 99 (147)
T 1z91_A 36 LNITYPQYLALLLLWE-HE--TLTVKKMGEQL--YLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLIS 99 (147)
T ss_dssp TCCCHHHHHHHHHHHH-HS--EEEHHHHHHTT--TCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEE
T ss_pred cCCCHHHHHHHHHHHH-CC--CCCHHHHHHHH--CCCcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEE
Confidence 4799999999999998 76 89999999999 99999999999999999999998766554344333
No 51
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=97.33 E-value=0.0014 Score=51.68 Aligned_cols=55 Identities=13% Similarity=0.238 Sum_probs=46.0
Q ss_pred CCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeee--cccc
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVV--NIHN 93 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vk--sv~~ 93 (252)
+||..|..|+..| . . .|+..++|...+ ++++..++++|+.||++|||...+ +-..
T Consensus 35 ~lt~~q~~iL~~l-~-~--~~~t~~eLa~~l--~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D 91 (151)
T 3kp7_A 35 GISAEQSHVLNML-S-I--EALTVGQITEKQ--GVNKAAVSRRVKKLLNAELVKLEKPDSNTD 91 (151)
T ss_dssp TCCHHHHHHHHHH-H-H--SCBCHHHHHHHH--CSCSSHHHHHHHHHHHTTSEEC--------
T ss_pred CCCHHHHHHHHHH-H-c--CCcCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEeeCCCCCCC
Confidence 7899999999999 6 3 579999999999 999999999999999999999865 5444
No 52
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=97.33 E-value=0.00078 Score=51.88 Aligned_cols=57 Identities=16% Similarity=0.251 Sum_probs=51.6
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeecccc
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~ 93 (252)
.+|+..|..|+..|.. . .|+..++|...+ +++++.++++|+.||++|+|...++-..
T Consensus 25 ~~l~~~~~~iL~~l~~-~--~~~~~~ela~~l--~~s~~tvs~~l~~L~~~glv~~~~~~~d 81 (138)
T 3bpv_A 25 LNLTDAQVACLLRIHR-E--PGIKQDELATFF--HVDKGTIARTLRRLEESGFIEREQDPEN 81 (138)
T ss_dssp GTCCHHHHHHHHHHHH-S--TTCBHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEEETTE
T ss_pred cCCCHHHHHHHHHHHH-c--CCCCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEeecCCCC
Confidence 3789999999999988 5 579999999999 9999999999999999999999876554
No 53
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=97.28 E-value=0.00071 Score=52.85 Aligned_cols=55 Identities=11% Similarity=0.193 Sum_probs=50.7
Q ss_pred CCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeecccc
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~ 93 (252)
+|+..|..|+..|.. .|. ..++|...+ ++++..+++.|+.||++|+|...++-..
T Consensus 34 ~lt~~~~~iL~~l~~-~~~---~~~~la~~l--~~~~~tvs~~l~~Le~~Glv~r~~~~~D 88 (144)
T 3f3x_A 34 NLSYLDFSILKATSE-EPR---SMVYLANRY--FVTQSAITAAVDKLEAKGLVRRIRDSKD 88 (144)
T ss_dssp SCCHHHHHHHHHHHH-SCE---EHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEEETTE
T ss_pred CCCHHHHHHHHHHHH-CCC---CHHHHHHHH--CCChhHHHHHHHHHHHCCCEEeccCCCC
Confidence 689999999999998 664 999999999 9999999999999999999999877665
No 54
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=97.27 E-value=0.00054 Score=53.43 Aligned_cols=63 Identities=21% Similarity=0.319 Sum_probs=48.5
Q ss_pred CCCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeE
Q 025493 31 SDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHL 99 (252)
Q Consensus 31 ~~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~Y 99 (252)
.-+||..|..|+..|.. .| +-.++|...+ +++.+.++++|+.||++|||...++-..+..+.|
T Consensus 33 ~~~lt~~~~~iL~~l~~-~~---~t~~eLa~~l--~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~ 95 (146)
T 3tgn_A 33 EVALTNTQEHILMLLSE-ES---LTNSELARRL--NVSQAAVTKAIKSLVKEGMLETSKDSKDARVIFY 95 (146)
T ss_dssp SSCCCHHHHHHHHHHTT-CC---CCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEC----------CC
T ss_pred ccCCCHHHHHHHHHHHh-CC---CCHHHHHHHH--CCCHHHHHHHHHHHHHCCCeEeccCCCCCceeEE
Confidence 35799999999999988 65 9999999999 9999999999999999999999877655433333
No 55
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=97.27 E-value=0.00055 Score=54.14 Aligned_cols=63 Identities=10% Similarity=0.228 Sum_probs=50.3
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeE
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHL 99 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~Y 99 (252)
.+|+..|..|+.+|.. .| |+..++|...+ +++...++++|+.||++|+|....+-..+..+.+
T Consensus 39 ~~lt~~~~~iL~~l~~-~~--~~t~~ela~~l--~i~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~ 101 (155)
T 3cdh_A 39 QGLRVPEWRVLACLVD-ND--AMMITRLAKLS--LMEQSRMTRIVDQMDARGLVTRVADAKDKRRVRV 101 (155)
T ss_dssp TTCCHHHHHHHHHHSS-CS--CBCHHHHHHHT--TCCHHHHHHHHHHHHHTTSEEECC------CCCE
T ss_pred cCCCHHHHHHHHHHHH-CC--CcCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEeccCCCcCCeeEe
Confidence 3789999999999977 54 79999999999 9999999999999999999998776655333333
No 56
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=97.27 E-value=0.00095 Score=52.63 Aligned_cols=58 Identities=19% Similarity=0.191 Sum_probs=49.3
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccC
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNK 94 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~ 94 (252)
.+|+..|..|+..|.. .| ++-.++|...+ +++...++++|+.||++|||...++-..+
T Consensus 43 ~~l~~~~~~iL~~l~~-~~--~~t~~ela~~l--~~s~~tvs~~l~~Le~~glv~r~~~~~d~ 100 (153)
T 2pex_A 43 LDLTYPQYLVMLVLWE-TD--ERSVSEIGERL--YLDSATLTPLLKRLQAAGLVTRTRAASDE 100 (153)
T ss_dssp TTCCHHHHHHHHHHHH-SC--SEEHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEC-----
T ss_pred CCCCHHHHHHHHHHHh-CC--CcCHHHHHHHh--CCCcccHHHHHHHHHHCCCEeecCCcccC
Confidence 4799999999999988 54 79999999999 99999999999999999999998765543
No 57
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=97.22 E-value=0.00048 Score=67.92 Aligned_cols=124 Identities=9% Similarity=0.078 Sum_probs=51.7
Q ss_pred CCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHh-----cCCeeeeeccccCCeeeEEecccccC
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQN-----KSLIKEVVNIHNKGKKHLMAVEFEPS 107 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~-----k~lIK~vksv~~~~rK~YmL~~lePs 107 (252)
.++..+.+|+.+|.+ .+ -|..++|+..+ +++..++.+.|+.|.+ +|||.... ..|+|..- .
T Consensus 427 ~~~~~~~~iL~~l~~-~~--~it~~~la~~l--~~s~~~~~~~L~~L~~~~~~~~glie~~g-------~~y~L~~~--~ 492 (583)
T 3lmm_A 427 QDDYRIAIVLYLLFQ-RP--FITIDVVARGL--QSGKEAARNALEAARQTTVAGAPLIIAHD-------GVWLLGNA--C 492 (583)
T ss_dssp TTCHHHHHHHHHHHH-SS--SBCHHHHHHHH--TSCHHHHHHHHHHHHTCEETTEESEEEET-------TEEEECHH--H
T ss_pred ccchhHHHHHHHHHH-CC--CcCHHHHHHHh--CcCHHHHHHHHHHHHhhhccccceEEEeC-------CEEEECHH--H
Confidence 456788999999998 44 59999999999 9999999999999988 88999963 35887541 0
Q ss_pred CCccCC--------ccccCCcCCHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCe
Q 025493 108 KDISGG--------AWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQ 179 (252)
Q Consensus 108 ~eiTGG--------~wy~d~e~D~efV~~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgk 179 (252)
.+.+|. .+|.. +|. +.+.+.++.||+.++..|..||.+-+. ++..++..+|+.|+-+|+
T Consensus 493 ~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~I~~~l~~~g~it~~di~~l~~--------ls~~qa~~~L~~Lv~~G~ 559 (583)
T 3lmm_A 493 REILRKVEPSPFSPVRYLS--TDQ---AELTNAAMLWLSEVGDLATSDLMAMCG--------VSRGTAKACVDGLVDEER 559 (583)
T ss_dssp HHHHTSCC------------------------------------------------------------------------
T ss_pred HHHhccccccccccccccc--CCh---hHHHHHHHHHHHHcCCcCHHHHHHHHC--------CCHHHHHHHHHHHHHCCc
Confidence 111221 12321 221 356678999999998888888887654 678889999999999999
Q ss_pred eEEE
Q 025493 180 IMEV 183 (252)
Q Consensus 180 IE~v 183 (252)
|+++
T Consensus 560 l~~~ 563 (583)
T 3lmm_A 560 VVAV 563 (583)
T ss_dssp ----
T ss_pred EEEe
Confidence 9875
No 58
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=97.19 E-value=0.00096 Score=48.91 Aligned_cols=60 Identities=15% Similarity=0.209 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEe
Q 025493 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMA 101 (252)
Q Consensus 36 ~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL 101 (252)
+.|+.|+.++.+|+-.+++..++|.+++ +++.+.|++.|+.||++|+|+.+- . ++-.|.+
T Consensus 14 ~~~~~IL~~L~~~~~~~~~t~~eLA~~L--gvs~~tV~~~L~~L~~~G~I~~~g--~--~~~~W~i 73 (77)
T 1qgp_A 14 DQEQRILKFLEELGEGKATTAHDLSGKL--GTPKKEINRVLYSLAKKGKLQKEA--G--TPPLWKI 73 (77)
T ss_dssp HHHHHHHHHHHHHCSSSCEEHHHHHHHH--CCCHHHHHHHHHHHHHHTSEEEEC--S--SSCEEEE
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEecC--C--CCCceEe
Confidence 3468899999994448899999999999 999999999999999999999874 1 2345655
No 59
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=97.15 E-value=0.0016 Score=50.47 Aligned_cols=63 Identities=19% Similarity=0.265 Sum_probs=52.3
Q ss_pred CCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEE
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLM 100 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~Ym 100 (252)
+++..+..|+.++.. + +.++..++|..++ +++.+.++++|+.||++|+|...++-.. .|.+|+
T Consensus 23 gl~~~~~~il~~L~~-~-~~~~t~~ela~~l--~~~~stvs~~l~~L~~~G~v~r~~~~~d-~r~~~~ 85 (152)
T 1ku9_A 23 GLNKSVGAVYAILYL-S-DKPLTISDIMEEL--KISKGNVSMSLKKLEELGFVRKVWIKGE-RKNYYE 85 (152)
T ss_dssp TCCHHHHHHHHHHHH-C-SSCEEHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEECCTTC-SSCEEE
T ss_pred CCChhHHHHHHHHHH-c-CCCCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEEecCCC-ceEEEe
Confidence 689999999999954 3 3689999999999 9999999999999999999998765433 344444
No 60
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=97.13 E-value=0.00067 Score=63.46 Aligned_cols=65 Identities=14% Similarity=0.239 Sum_probs=58.1
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEE
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLM 100 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~Ym 100 (252)
-+||..|..|+..|.+ ....|+.+++|..++ ++....++++|+.||++|||.+.++-+- .|.+++
T Consensus 400 ~~lt~~q~~vl~~l~~-~~~~~~~~~~l~~~~--~~~~~~~t~~~~~le~~g~v~r~~~~~D-~R~~~i 464 (487)
T 1hsj_A 400 FNLNYEEIYILNHILR-SESNEISSKEIAKCS--EFKPYYLTKALQKLKDLKLLSKKRSLQD-ERTVIV 464 (487)
T ss_dssp CCCCHHHHHHHHHHHT-CSCSEEEHHHHHHSS--CCCHHHHHHHHHHHHTTTTSCCEECCSS-SSCCEE
T ss_pred cCCCHHHHHHHHHHHh-CCCCCcCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEeecCCCCC-CCeEEE
Confidence 4799999999999999 766899999999999 9999999999999999999999998776 455544
No 61
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=97.13 E-value=0.0011 Score=58.67 Aligned_cols=65 Identities=14% Similarity=0.190 Sum_probs=57.8
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEE
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLM 100 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~Ym 100 (252)
-+||..|..|+..|.. .++.++.+++|...+ ++.+..++++|+.||++|||....+-.- .|.+++
T Consensus 154 ~gLt~~q~~vL~~L~~-~~~~~~t~~eLa~~l--~i~~~tvt~~v~rLe~~GlV~R~~~~~D-rR~~~i 218 (250)
T 1p4x_A 154 LTLSFVEFTILAIITS-QNKNIVLLKDLIETI--HHKYPQTVRALNNLKKQGYLIKERSTED-ERKILI 218 (250)
T ss_dssp CSSCHHHHHHHHHHHT-TTTCCEEHHHHHHHS--SSCHHHHHHHHHHHHHHTSSEEEECSSS-TTCEEE
T ss_pred CCCCHHHHHHHHHHHh-CCCCCcCHHHHHHHH--CCChhhHHHHHHHHHHCCCEEeeCCCCC-CCeEEE
Confidence 4799999999999999 887789999999999 9999999999999999999999988775 344443
No 62
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=97.12 E-value=0.00081 Score=52.45 Aligned_cols=61 Identities=8% Similarity=0.145 Sum_probs=50.0
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCe
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGK 96 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~r 96 (252)
.+|+..|..|+..|.. + +.|+..++|...+ ++++..++++|+.||++|||....+-..+..
T Consensus 31 ~~l~~~~~~iL~~l~~-~-~~~~~~~~la~~l--~i~~~~vs~~l~~Le~~glv~r~~~~~d~R~ 91 (147)
T 2hr3_A 31 DPVQFSQLVVLGAIDR-L-GGDVTPSELAAAE--RMRSSNLAALLRELERGGLIVRHADPQDGRR 91 (147)
T ss_dssp CHHHHHHHHHHHHHHH-T-TSCBCHHHHHHHT--TCCHHHHHHHHHHHHHTTSEEEEC------C
T ss_pred cCCCHHHHHHHHHHHH-c-CCCCCHHHHHHHh--CCChhhHHHHHHHHHHCCCEeeCCCCCCCCc
Confidence 4789999999999987 5 5689999999999 9999999999999999999999877655333
No 63
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=97.11 E-value=0.002 Score=47.16 Aligned_cols=62 Identities=13% Similarity=0.145 Sum_probs=48.8
Q ss_pred ChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEe
Q 025493 35 TDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMA 101 (252)
Q Consensus 35 ~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL 101 (252)
++-...|+..+.+ .| ++...+|...+ ++++..+++.|+.||++|+|...+....+.++.|-|
T Consensus 15 ~~~~~~iL~~L~~-~~--~~~~~ela~~l--~is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~l 76 (100)
T 1ub9_A 15 NPVRLGIMIFLLP-RR--KAPFSQIQKVL--DLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEI 76 (100)
T ss_dssp SHHHHHHHHHHHH-HS--EEEHHHHHHHT--TCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEE
T ss_pred ChHHHHHHHHHHh-cC--CcCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEE
Confidence 3456677887866 44 68999999999 999999999999999999999877664434444444
No 64
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=97.09 E-value=0.0041 Score=45.75 Aligned_cols=57 Identities=16% Similarity=0.169 Sum_probs=46.3
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccc
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~ 92 (252)
.+|++.+..++..+.. . +.++-..+|...+ +++.+.++++|+.|+++|+|...+.-.
T Consensus 17 ~~l~~~~~~~l~~l~~-~-~~~~t~~ela~~l--~is~~tv~~~l~~L~~~g~v~~~~~~~ 73 (109)
T 2d1h_A 17 YKITDTDVAVLLKMVE-I-EKPITSEELADIF--KLSKTTVENSLKKLIELGLVVRTKTEG 73 (109)
T ss_dssp HTCCHHHHHHHHHHHH-H-CSCEEHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEEC--
T ss_pred hcCCHHHHHHHHHHHH-c-CCCCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCeEeecccc
Confidence 4688887766655544 3 4579999999999 999999999999999999999987543
No 65
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=97.05 E-value=0.0013 Score=48.82 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=48.1
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHH----HHHhhcCCChHHHHHHHHHHHhcCCeeeeecc
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDM----KRELKVNLPDNIVTKSIKSLQNKSLIKEVVNI 91 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~di----k~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv 91 (252)
.+|+..|..|+..|.+ . .|+..++| ...+ ++++..++++|+.||++|||....+-
T Consensus 4 ~~lt~~q~~iL~~l~~-~--~~~~~~el~~~la~~l--~is~~tvs~~l~~Le~~gli~r~~~~ 62 (99)
T 1tbx_A 4 TPFFYPEAIVLAYLYD-N--EGIATYDLYKKVNAEF--PMSTATFYDAKKFLIQEGFVKERQER 62 (99)
T ss_dssp CSSBCHHHHHHHHHTT-C--TTCBHHHHHHHHHTTS--CCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCCCHHHHHHHHHHHH-c--CCcCHHHHHHHHHHHc--CCCHHHHHHHHHHHHHCCCEEEEecC
Confidence 3688899999998876 4 57899999 8889 99999999999999999999987653
No 66
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=97.04 E-value=0.0029 Score=54.44 Aligned_cols=118 Identities=11% Similarity=0.179 Sum_probs=81.9
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccH--HHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEecccccCCC
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWT--RDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKD 109 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~--~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~~lePs~e 109 (252)
+.||+-+..++..|.. .+..|+.. ++|..++ ++..+.++++|+.||++|||...++ + .+.| +|.
T Consensus 2 ~~lt~~~e~~L~~L~~-l~~~~~~~~~~~La~~l--~vs~~tvs~~l~~Le~~GlV~r~~~-----~-~v~L---T~~-- 67 (230)
T 1fx7_A 2 NELVDTTEMYLRTIYD-LEEEGVTPLRARIAERL--DQSGPTVSQTVSRMERDGLLRVAGD-----R-HLEL---TEK-- 67 (230)
T ss_dssp CTTSSHHHHHHHHHHH-HHHHTSCCCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEECTT-----S-CEEE---CHH--
T ss_pred CCCCHHHHHHHHHHHH-HhhcCCCCcHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEeCC-----c-cEEE---CHH--
Confidence 4688877788888877 55568888 9999999 9999999999999999999998653 2 2222 221
Q ss_pred ccCCccccCCcCCHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHh
Q 025493 110 ISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVV 175 (252)
Q Consensus 110 iTGG~wy~d~e~D~efV~~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLV 175 (252)
|.=-.+-+....+....|+...-..+.+++++...... -.+|++++++|.+.|-
T Consensus 68 ---------G~~~~~~~~~~~~~~e~~l~~~lg~~~~~~~~~a~~le---~~ls~e~~~~L~~~L~ 121 (230)
T 1fx7_A 68 ---------GRALAIAVMRKHRLAERLLVDVIGLPWEEVHAEACRWE---HVMSEDVERRLVKVLN 121 (230)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHT---TTCCHHHHHHHHHHTT
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHhC
Confidence 11111122233344567777666778888877654322 2478999999988774
No 67
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=97.04 E-value=0.0022 Score=47.70 Aligned_cols=61 Identities=15% Similarity=0.208 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEec
Q 025493 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAV 102 (252)
Q Consensus 36 ~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~ 102 (252)
+-++.|+.+|.+|+-.+++-.++|.+++ +++.+.|++.|+.||+.|+|+.+. .++-.|.+.
T Consensus 10 ~~~~~IL~~L~~~~pg~~~t~~eLA~~L--gvsr~tV~~~L~~Le~~G~I~~~g----~~~~~W~i~ 70 (81)
T 1qbj_A 10 DQEQRILKFLEELGEGKATTAHDLSGKL--GTPKKEINRVLYSLAKKGKLQKEA----GTPPLWKIA 70 (81)
T ss_dssp HHHHHHHHHHHHHCTTCCBCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEES----SSSCEEEEC
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEecC----CCCCeeEEe
Confidence 4577899999994437899999999999 999999999999999999998873 233567664
No 68
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=96.98 E-value=0.0011 Score=51.05 Aligned_cols=57 Identities=12% Similarity=0.135 Sum_probs=48.8
Q ss_pred CCCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhc--CCChHHHHHHHHHHHhcCCeeeeec
Q 025493 31 SDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKV--NLPDNIVTKSIKSLQNKSLIKEVVN 90 (252)
Q Consensus 31 ~~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~--~l~~~~l~k~lK~Le~k~lIK~vks 90 (252)
..+|++.|..|+.+|-+ .| ++..++|..+++. ++..+.|+++|+.||+||+|+..++
T Consensus 30 ~~~LT~~e~~VL~~L~~-~~--~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~~ 88 (99)
T 2k4b_A 30 EFNVSNAELIVMRVIWS-LG--EARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEKE 88 (99)
T ss_dssp -CCCCCSCSHHHHHHHH-HS--CEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEEE
T ss_pred CCCCCHHHHHHHHHHHh-CC--CCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEeC
Confidence 44799999999999998 65 8999999999822 3678999999999999999999764
No 69
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=96.95 E-value=0.0018 Score=54.93 Aligned_cols=57 Identities=11% Similarity=0.063 Sum_probs=50.7
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeecccc
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~ 93 (252)
.+|+..|..|+.+|.. .| |+-.++|...+ +++...++++|+.||++|||...++-..
T Consensus 44 ~gLt~~q~~iL~~L~~-~~--~~t~~eLa~~l--~i~~stvs~~l~~Le~~GlV~r~~~~~D 100 (207)
T 2fxa_A 44 YDLNINEHHILWIAYQ-LN--GASISEIAKFG--VMHVSTAFNFSKKLEERGYLRFSKRLND 100 (207)
T ss_dssp GTCCHHHHHHHHHHHH-HT--SEEHHHHHHHT--TCCHHHHHHHHHHHHHHTSEEEECC---
T ss_pred cCCCHHHHHHHHHHHH-CC--CcCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEEecCCCC
Confidence 4799999999999988 65 89999999999 9999999999999999999999887665
No 70
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=96.88 E-value=0.00072 Score=55.39 Aligned_cols=59 Identities=12% Similarity=0.131 Sum_probs=51.1
Q ss_pred CCCChHHHHHHHHHHhhcCC-CcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeecccc
Q 025493 32 DSLTDHERLIYDVIRSNKQD-MGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~-~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~ 93 (252)
.+|+..|..|+..|.. .|. .|+-.++|...+ ++++..+++.|+.||++|||...++-..
T Consensus 65 ~glt~~~~~iL~~L~~-~~~~~~~t~~eLa~~l--~is~~tvs~~l~~Le~~GlV~r~~~~~D 124 (181)
T 2fbk_A 65 SGLNAAGWDLLLTLYR-SAPPEGLRPTELSALA--AISGPSTSNRIVRLLEKGLIERREDERD 124 (181)
T ss_dssp TTCCHHHHHHHHHHHH-HCCSSCBCHHHHHHHC--SCCSGGGSSHHHHHHHHTSEECCC----
T ss_pred cCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHH--CCCHHHHHHHHHHHHHCcCEEecCCCCC
Confidence 4799999999999999 765 589999999999 9999999999999999999999776554
No 71
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=96.82 E-value=0.026 Score=43.82 Aligned_cols=56 Identities=18% Similarity=0.265 Sum_probs=45.1
Q ss_pred CCCChHHHHHHHHHHhhc-CCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeee
Q 025493 32 DSLTDHERLIYDVIRSNK-QDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVV 89 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~a-g~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vk 89 (252)
.+|+..+..++..|...+ .+.++..++|..++ ++++..++++|+.||++|||...+
T Consensus 9 ~~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l--~is~~tv~~~l~~Le~~Gli~r~~ 65 (139)
T 2x4h_A 9 SNLSRREFSYLLTIKRYNDSGEGAKINRIAKDL--KIAPSSVFEEVSHLEEKGLVKKKE 65 (139)
T ss_dssp --CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEET
T ss_pred hhcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHh--CCChHHHHHHHHHHHHCCCEEecC
Confidence 467887776766665412 35689999999999 999999999999999999999854
No 72
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=96.80 E-value=0.0023 Score=47.58 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=41.5
Q ss_pred CCChHHHHHHHHHHh-hcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCe
Q 025493 33 SLTDHERLIYDVIRS-NKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLI 85 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~-~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lI 85 (252)
.|+.-+..|+..|.. ..|+..+..++|...+ +++...++++|+.||++|||
T Consensus 9 ~l~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l--~i~~~tvs~~l~~Le~~Glv 60 (95)
T 2qvo_A 9 LFKEKALEILMTIYYESLGGNDVYIQYIASKV--NSPHSYVWLIIKKFEEAKMV 60 (95)
T ss_dssp HSCHHHHHHHHHHHHHHHTTCCEEHHHHHHHS--SSCHHHHHHHHHHHHHTTSE
T ss_pred CCchhHHHHHHHHHHccCCCCCcCHHHHHHHH--CcCHHHHHHHHHHHHHCcCc
Confidence 567767666666644 1234459999999999 99999999999999999999
No 73
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=96.68 E-value=0.0087 Score=47.78 Aligned_cols=58 Identities=12% Similarity=0.226 Sum_probs=50.9
Q ss_pred CCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCC
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKG 95 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~ 95 (252)
.|++-+..|+.++.+ .| .+..++|..++ |++...+.+.|+.||++|+|+.+...-.+.
T Consensus 4 ~ld~~~~~iL~~L~~-~~--~~s~~ela~~l--g~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (150)
T 2w25_A 4 ALDDIDRILVRELAA-DG--RATLSELATRA--GLSVSAVQSRVRRLESRGVVQGYSARINPE 61 (150)
T ss_dssp CCCHHHHHHHHHHHH-CT--TCCHHHHHHHH--TSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred ccCHHHHHHHHHHHH-cC--CCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEEEeccChh
Confidence 388889999999988 54 58999999999 999999999999999999999888765543
No 74
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=96.64 E-value=0.0074 Score=44.52 Aligned_cols=68 Identities=13% Similarity=0.232 Sum_probs=50.9
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeCCCCCcccccCCcceeecccCCCCC
Q 025493 131 SQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGG 210 (252)
Q Consensus 131 ~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~g~~~f~~~~~g~~~YR~~~~~~~~ 210 (252)
+.|+++|+.++.+|++|+++.+ .+|+.-|+.-|+.|+-.|+|++++..|.
T Consensus 5 ~~Il~~L~~~g~vsv~eLa~~l--------~VS~~TIRrdL~~Le~~G~l~R~~~~Gg---------------------- 54 (78)
T 1xn7_A 5 IQVRDLLALRGRMEAAQISQTL--------NTPQPMINAMLQQLESMGKAVRIQEEPD---------------------- 54 (78)
T ss_dssp HHHHHHHHHSCSBCHHHHHHHT--------TCCHHHHHHHHHHHHHHTSEEEECCCCC----------------------
T ss_pred HHHHHHHHHcCCCcHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEecCcCC----------------------
Confidence 4677777777888888877754 4788999999999999999999853221
Q ss_pred CCCCCCCcccCCCCCCCccccCCC
Q 025493 211 GEPKTGSSASVPCGVCPQINFCTP 234 (252)
Q Consensus 211 ~~~~~~~l~~vPCg~CPv~~~C~~ 234 (252)
+-..-.|+.||--..|.+
T Consensus 55 ------aC~~g~C~~C~~~~~c~~ 72 (78)
T 1xn7_A 55 ------GCLSGSCKSCPEGKACLR 72 (78)
T ss_dssp ------CCCCSSCCCCCCCCCCCC
T ss_pred ------CCCCCCCCCCCCCCCCCc
Confidence 111126999999888864
No 75
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=96.60 E-value=0.0095 Score=43.48 Aligned_cols=58 Identities=12% Similarity=0.200 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEe
Q 025493 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMA 101 (252)
Q Consensus 36 ~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL 101 (252)
+.+..|+.+|.+ +.++...+|...+ ++++..+++.|+.|++.|+|...+. ..++.|-+
T Consensus 24 ~~~~~il~~l~~---~~~~s~~ela~~l--~is~~tvs~~l~~L~~~glv~~~~~---~r~~~y~l 81 (99)
T 3cuo_A 24 PKRLLILCMLSG---SPGTSAGELTRIT--GLSASATSQHLARMRDEGLIDSQRD---AQRILYSI 81 (99)
T ss_dssp HHHHHHHHHHTT---CCSEEHHHHHHHH--CCCHHHHHHHHHHHHHTTSEEEEEC---SSCEEEEE
T ss_pred hHHHHHHHHHHh---CCCcCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEEec---CCEEEEEE
Confidence 456667777744 3478999999999 9999999999999999999998752 33444544
No 76
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=96.59 E-value=0.01 Score=47.15 Aligned_cols=56 Identities=18% Similarity=0.299 Sum_probs=49.3
Q ss_pred CCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeecccc
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~ 93 (252)
.|++-++.|+.++.+ .| .+..++|..++ |++...+.+.|+.||++|+|+.....-+
T Consensus 2 ~ld~~d~~il~~L~~-~~--~~s~~ela~~l--g~s~~tv~~~l~~L~~~G~i~~~~~~~d 57 (144)
T 2cfx_A 2 KLDQIDLNIIEELKK-DS--RLSMRELGRKI--KLSPPSVTERVRQLESFGIIKQYTLEVD 57 (144)
T ss_dssp CCCHHHHHHHHHHHH-CS--CCCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEEEEEC
T ss_pred CCCHHHHHHHHHHHH-cC--CCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCeEEEecccC
Confidence 388889999999988 44 58999999999 9999999999999999999998765443
No 77
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=96.56 E-value=0.0056 Score=43.06 Aligned_cols=45 Identities=24% Similarity=0.299 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCee
Q 025493 38 ERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIK 86 (252)
Q Consensus 38 e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK 86 (252)
|..||+.|++ +|. =|-.++..++. +.....|-++|++||+||||+
T Consensus 12 e~~lL~yIr~-sGG-ildI~~~a~ky--gV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 12 ERELLDYIVN-NGG-FLDIEHFSKVY--GVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHHHHH-TTS-EEEHHHHHHHH--CCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHH-cCC-EEeHHHHHHHh--CCCHHHHHHHHHHHHHCCCee
Confidence 5689999999 552 25678888999 999999999999999999997
No 78
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=96.53 E-value=0.016 Score=41.74 Aligned_cols=71 Identities=10% Similarity=0.070 Sum_probs=50.5
Q ss_pred HHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEecccccCCCccCCccccC
Q 025493 39 RLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSE 118 (252)
Q Consensus 39 ~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~~lePs~eiTGG~wy~d 118 (252)
..|+.++.+ .| ++..++|...+ +++.+.+.+.|+.|++.|+|..... .......|.+. +.....=.++|+.
T Consensus 3 ~~Il~~L~~-~~--~~s~~eLa~~l--gvs~~tv~r~L~~L~~~GlI~~~~~-~~gr~~~y~l~---~~~~~~~~~~~~~ 73 (81)
T 2htj_A 3 NEILEFLNR-HN--GGKTAEIAEAL--AVTDYQARYYLLLLEKAGMVQRSPL-RRGMATYWFLK---GEKQAGQSCSSTT 73 (81)
T ss_dssp HHHHHHHHH-SC--CCCHHHHHHHH--TSCHHHHHHHHHHHHHHTSEEEECC-SSSSSCEEEES---SCSSSSCGGGGCS
T ss_pred HHHHHHHHH-cC--CCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEecc-CCCCcEEEEEC---hhhhccHHHHHhH
Confidence 467888888 54 58999999999 9999999999999999999986543 22223344442 2222222566754
No 79
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=96.50 E-value=0.012 Score=48.66 Aligned_cols=72 Identities=19% Similarity=0.311 Sum_probs=56.3
Q ss_pred CCCCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCe----eeEEecccc
Q 025493 30 PSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGK----KHLMAVEFE 105 (252)
Q Consensus 30 ~~~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~r----K~YmL~~le 105 (252)
....|++-++.|+.++.+ .| .+..++|.+++ |++...+.+.|+.||++|+|+.+..+-++.+ ..|+...++
T Consensus 11 ~~~~ld~~d~~IL~~L~~-~~--~~s~~eLA~~l--glS~~tv~~~l~~L~~~G~I~~~~~~~d~~~lG~~~a~v~v~~~ 85 (171)
T 2ia0_A 11 SEIHLDDLDRNILRLLKK-DA--RLTISELSEQL--KKPESTIHFRIKKLQERGVIERYTIILGEQLKPKHLALIVLEVG 85 (171)
T ss_dssp ---CCCHHHHHHHHHHHH-CT--TCCHHHHHHHH--TSCHHHHHHHHHHHHHTTSEEEEEEEECTTTSCSEEEEEEEEES
T ss_pred CcCCCCHHHHHHHHHHHH-cC--CCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEeecccCCHHHhhcceEEEEEEEC
Confidence 345689999999999988 54 58999999999 9999999999999999999998776544332 345554554
Q ss_pred c
Q 025493 106 P 106 (252)
Q Consensus 106 P 106 (252)
|
T Consensus 86 ~ 86 (171)
T 2ia0_A 86 K 86 (171)
T ss_dssp C
T ss_pred C
Confidence 4
No 80
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=96.40 E-value=0.096 Score=40.77 Aligned_cols=113 Identities=12% Similarity=0.170 Sum_probs=89.7
Q ss_pred CChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEecccccCCCccCC
Q 025493 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGG 113 (252)
Q Consensus 34 l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~~lePs~eiTGG 113 (252)
++++|..+.+.|.+.-+..|.|.+|+-... +++...+.+.|+.|...|.|..+. .-+|
T Consensus 1 ~~~~~~~l~~~i~~~~~~~p~~~~~la~~~--~~~~~~~~~~l~~l~~~G~l~~i~------~~~~-------------- 58 (121)
T 2pjp_A 1 FSEEQQAIWQKAEPLFGDEPWWVRDLAKET--GTDEQAMRLTLRQAAQQGIITAIV------KDRY-------------- 58 (121)
T ss_dssp CCHHHHHHHHHHGGGCSSSCEEHHHHHHHT--TCCHHHHHHHHHHHHHTTSEEEEE------TTEE--------------
T ss_pred CCHHHHHHHHHHHHHHHhCCCCHHHHHHHh--CCCHHHHHHHHHHHHHCCCEEEec------CCce--------------
Confidence 456666667766663556899999999999 999999999999999999988874 2233
Q ss_pred ccccCCcCCHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEE
Q 025493 114 AWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEV 183 (252)
Q Consensus 114 ~wy~d~e~D~efV~~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v 183 (252)
|..+.++.+.+.+..++..++..|+.+..+.+ | +|-.=.-.||+-|=-.|...++
T Consensus 59 -------~~~~~~~~~~~~l~~~~~~~~~it~ae~Rd~l---g-----~sRK~ai~lLE~~Dr~g~TrR~ 113 (121)
T 2pjp_A 59 -------YRNDRIVEFANMIRDLDQECGSTCAADFRDRL---G-----VGRKLAIQILEYFDRIGFTRRR 113 (121)
T ss_dssp -------EEHHHHHHHHHHHHHHHHHHSSEEHHHHHHHH---T-----SCHHHHHHHHHHHHHHTSEEEE
T ss_pred -------ECHHHHHHHHHHHHHHHHHCCCccHHHHHHHH---C-----CcHHHHHHHHHHHhhcCCeEee
Confidence 45788999999999999999999999999988 3 5566666777777666655543
No 81
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=96.38 E-value=0.019 Score=46.42 Aligned_cols=58 Identities=10% Similarity=0.263 Sum_probs=50.7
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccC
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNK 94 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~ 94 (252)
..|++-++.|+.++.+ .|. +..++|..++ |++...+.+.|+.||++|+|+....+-++
T Consensus 6 ~~ld~~~~~il~~L~~-~~~--~s~~ela~~l--g~s~~tv~~~l~~L~~~G~i~~~~~~~d~ 63 (162)
T 2p5v_A 6 LTLDKTDIKILQVLQE-NGR--LTNVELSERV--ALSPSPCLRRLKQLEDAGIVRQYAALLSP 63 (162)
T ss_dssp CCCCHHHHHHHHHHHH-CTT--CCHHHHHHHH--TSCHHHHHHHHHHHHHTTSEEEEEEEECT
T ss_pred cCCCHHHHHHHHHHHH-cCC--CCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEeeecccCCh
Confidence 3589999999999988 554 8999999999 99999999999999999999987765443
No 82
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=96.31 E-value=0.0059 Score=48.86 Aligned_cols=70 Identities=11% Similarity=0.258 Sum_probs=46.7
Q ss_pred CCCChHHHHHHHHHHhhcC--CCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEecccccC
Q 025493 32 DSLTDHERLIYDVIRSNKQ--DMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPS 107 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag--~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~~lePs 107 (252)
.+||..|..|+..|..+-| +.++.+++|...+ +++...++++|+.||++||| ...+-.. +| ... ..|+|.
T Consensus 29 ~gLt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l--~~~~~tvsr~v~~Le~~glV-r~~~~~D-rR-~~~-v~LT~~ 100 (148)
T 4fx0_A 29 SGLTNTQFSTLAVISLSEGSAGIDLTMSELAARI--GVERTTLTRNLEVMRRDGLV-RVMAGAD-AR-CKR-IELTAK 100 (148)
T ss_dssp GTCCHHHHHHHHHHHC---------CHHHHHHHH--TCCHHHHHHHHHHHHHTTSB-C--------------CCBCHH
T ss_pred cCCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHH--CCChhhHHHHHHHHHHCCCE-EeeCCCC-CC-eeE-EEECHH
Confidence 4799999999999987223 3569999999999 99999999999999999999 4455332 33 332 246665
No 83
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=96.29 E-value=0.012 Score=41.67 Aligned_cols=51 Identities=10% Similarity=0.195 Sum_probs=43.3
Q ss_pred CCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeee
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKE 87 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~ 87 (252)
.|++-+..|+.++.+ .| ..+...+|..++ +++...|.|+|+.|+..|+|.+
T Consensus 7 ~m~~~~~~IL~~L~~-~~-~~~s~~eLA~~l--glsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 7 TGDNLEQKILQVLSD-DG-GPVAIFQLVKKC--QVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp --CHHHHHHHHHHHH-HC-SCEEHHHHHHHH--CSCHHHHHHHHHHHHHTTSEEE
T ss_pred cccHHHHHHHHHHHH-cC-CCcCHHHHHHHH--CcCHHHHHHHHHHHHHCCcEec
Confidence 577667789999987 54 459999999999 9999999999999999999865
No 84
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=96.26 E-value=0.013 Score=44.33 Aligned_cols=51 Identities=18% Similarity=0.183 Sum_probs=42.8
Q ss_pred CCcccHHHHHHHhhcC-CChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEecc
Q 025493 51 DMGIWTRDMKRELKVN-LPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVE 103 (252)
Q Consensus 51 ~~GIw~~dik~~~~~~-l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~~ 103 (252)
+.++-..+|...+ + +.+..+++.|+.||++|||.....-..+.+..|-|.+
T Consensus 36 ~~~~~~~eL~~~l--~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~ 87 (107)
T 2fsw_A 36 RRIIRYGELKRAI--PGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTP 87 (107)
T ss_dssp TSCEEHHHHHHHS--TTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECH
T ss_pred hCCcCHHHHHHHc--ccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECc
Confidence 4568999999999 7 9999999999999999999998776665566666643
No 85
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=96.25 E-value=0.0093 Score=48.10 Aligned_cols=49 Identities=12% Similarity=0.198 Sum_probs=42.6
Q ss_pred CcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEecc
Q 025493 52 MGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVE 103 (252)
Q Consensus 52 ~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~~ 103 (252)
.++-..+|.+.+ ++.++.+++.|+.||++|||.....-..+ +..|-|.+
T Consensus 36 g~~~~~eLa~~l--gis~~tls~~L~~Le~~GlI~r~~~~~d~-~~~y~LT~ 84 (146)
T 2f2e_A 36 GLTRFGEFQKSL--GLAKNILAARLRNLVEHGVMVAVPAESGS-HQEYRLTD 84 (146)
T ss_dssp TCCSHHHHHHHH--CCCHHHHHHHHHHHHHTTSEEEEECSSSS-CEEEEECH
T ss_pred CCCCHHHHHHHh--CCCHHHHHHHHHHHHHCCCEEEEecCCCC-eEEEEECc
Confidence 368899999999 99999999999999999999998877666 77776643
No 86
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=96.23 E-value=0.0094 Score=51.26 Aligned_cols=119 Identities=9% Similarity=0.166 Sum_probs=76.7
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccH--HHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEecccccCCC
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWT--RDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKD 109 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~--~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~~lePs~e 109 (252)
.+||+.+..++..|.. .+..|+.. ++|..++ ++.+..++++|+.||++|||...++ +.++ |++.
T Consensus 2 ~~lt~~~e~yL~~i~~-l~~~~~~~~~~~la~~l--~vs~~tvs~~l~~Le~~GlV~r~~~-----~~v~----LT~~-- 67 (226)
T 2qq9_A 2 KDLVATTEMYLRTIYE-LEEEGVTPLRARIAERL--EQSGPTVSQTVARMERDGLVVVASD-----RSLQ----MTPT-- 67 (226)
T ss_dssp -CHHHHHHHHHHHHHH-HHHHTCCCBHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEECTT-----SBEE----ECHH--
T ss_pred CCCCHHHHHHHHHHHH-HhhcCCCccHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEEeCC-----CCeE----ECHH--
Confidence 3567766667777766 55557776 9999999 9999999999999999999988543 1111 2222
Q ss_pred ccCCccccCCcCCHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhh
Q 025493 110 ISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVL 176 (252)
Q Consensus 110 iTGG~wy~d~e~D~efV~~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVy 176 (252)
|.--.+-+....+....|+...-..+.+++++...... -.+|.+-+++|.+.|-+
T Consensus 68 ---------G~~~~~~~~~~~~~~e~~l~~~lgl~~ee~~~~a~~le---h~~s~~~~~~l~~~l~~ 122 (226)
T 2qq9_A 68 ---------GRTLATAVMRKHRLAERLLTDIIGLDINKVHDEADRWE---HVMSDEVERRLVKVLKD 122 (226)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHT---TTCCHHHHHHHHHHSSC
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH---hhCCHHHHHHHHHHhCC
Confidence 21111222222345556666544578888887766554 23566667777666643
No 87
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=96.20 E-value=0.021 Score=42.89 Aligned_cols=49 Identities=14% Similarity=0.226 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeec
Q 025493 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVN 90 (252)
Q Consensus 36 ~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vks 90 (252)
+-...|+.++ . .| ++..++|...+ +++++.+++.|+.|+.+|+|...+.
T Consensus 21 ~~r~~IL~~L-~-~~--~~~~~ela~~l--~is~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 21 ETRWEILTEL-G-RA--DQSASSLATRL--PVSRQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp HHHHHHHHHH-H-HS--CBCHHHHHHHS--SSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred hHHHHHHHHH-H-cC--CCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCeeEEec
Confidence 3456677788 5 44 48999999999 9999999999999999999998764
No 88
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=96.17 E-value=0.0083 Score=47.74 Aligned_cols=56 Identities=18% Similarity=0.319 Sum_probs=47.9
Q ss_pred CChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccC
Q 025493 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNK 94 (252)
Q Consensus 34 l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~ 94 (252)
|++-+..|+.++.+ .| ++..++|..++ |++...+.+.|+.||++|+|+.+..+-++
T Consensus 1 ld~~~~~il~~L~~-~~--~~~~~ela~~l--g~s~~tv~~~l~~L~~~G~i~~~~~~~d~ 56 (150)
T 2pn6_A 1 MDEIDLRILKILQY-NA--KYSLDEIAREI--RIPKATLSYRIKKLEKDGVIKGYYAYINP 56 (150)
T ss_dssp CCHHHHHHHHHHTT-CT--TSCHHHHHHHH--TSCHHHHHHHHHHHHHTTSSCCCCCCCCG
T ss_pred CChHHHHHHHHHHH-cC--CCCHHHHHHHH--CcCHHHHHHHHHHHHHCCcEEEEEeecCH
Confidence 56778888888877 44 69999999999 99999999999999999999987655443
No 89
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=96.13 E-value=0.019 Score=43.50 Aligned_cols=51 Identities=18% Similarity=0.262 Sum_probs=42.2
Q ss_pred CCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEec
Q 025493 51 DMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAV 102 (252)
Q Consensus 51 ~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~ 102 (252)
+.++-..+|.+.++ ++.+..+++.|+.||++|||.....-..+.+..|-|.
T Consensus 25 ~~~~~~~eLa~~l~-~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT 75 (107)
T 2hzt_A 25 HGKKRTSELKRLMP-NITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELS 75 (107)
T ss_dssp TCCBCHHHHHHHCT-TSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEEC
T ss_pred hCCCCHHHHHHHhc-CCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEEC
Confidence 44688999999864 8999999999999999999999877666556666553
No 90
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=96.12 E-value=0.033 Score=42.68 Aligned_cols=67 Identities=16% Similarity=0.250 Sum_probs=55.0
Q ss_pred CCCChHHHHHHHHHHhhc----CCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEeccccc
Q 025493 32 DSLTDHERLIYDVIRSNK----QDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEP 106 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~a----g~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~~leP 106 (252)
.+|+.-+..||..+.+ + ....+-..+|.+.+ .|++..++|.|+.||.+|||....+ .-+|.. ..|+|
T Consensus 12 ~gl~~~q~~vL~~L~~-~~~~~~g~~~s~~eLa~~l--~l~~stLsR~l~rLe~~GLV~r~~~--~D~R~~---v~LT~ 82 (96)
T 2obp_A 12 DGIDPAIVEVLLVLRE-AGIENGATPWSLPKIAKRA--QLPMSVLRRVLTQLQAAGLADVSVE--ADGRGH---ASLTQ 82 (96)
T ss_dssp -CCCHHHHHHHHHHHH-HTSSTTCCCCBHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEEC--TTSCEE---EEECH
T ss_pred cCCCHHHHHHHHHHHH-HHhhCCCCCcCHHHHHHHh--CCchhhHHHHHHHHHHCCCEEeecC--CCCcee---EEECH
Confidence 5799999999997876 5 55668999999999 9999999999999999999998666 345653 25555
No 91
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=96.10 E-value=0.015 Score=46.26 Aligned_cols=57 Identities=14% Similarity=0.253 Sum_probs=49.9
Q ss_pred CCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccC
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNK 94 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~ 94 (252)
.|++-++.|+.++.+ . ..+..++|..++ |++...+.+.|+.|+++|+|+.+..+-++
T Consensus 6 ~ld~~d~~il~~L~~-~--~~~s~~ela~~l--g~s~~tv~~~l~~L~~~G~i~~~~~~~~~ 62 (151)
T 2dbb_A 6 KLDRVDMQLVKILSE-N--SRLTYRELADIL--NTTRQRIARRIDKLKKLGIIRKFTIIPDI 62 (151)
T ss_dssp CCCHHHHHHHHHHHH-C--TTCCHHHHHHHT--TSCHHHHHHHHHHHHHHTSEEEEEEEECT
T ss_pred hCCHHHHHHHHHHHH-c--CCCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEEEecCCh
Confidence 488889999999988 4 459999999999 99999999999999999999987765443
No 92
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=96.02 E-value=0.014 Score=43.03 Aligned_cols=43 Identities=9% Similarity=0.025 Sum_probs=36.5
Q ss_pred HHHHHHHhhcCCCcccHHHHHHHhhcCCChHH-HHHHHHHHHhcCCee
Q 025493 40 LIYDVIRSNKQDMGIWTRDMKRELKVNLPDNI-VTKSIKSLQNKSLIK 86 (252)
Q Consensus 40 ~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~-l~k~lK~Le~k~lIK 86 (252)
.++..+.+ .| .|+-.++|.+.+ ++++.. +++.|+.||++|+|+
T Consensus 19 ~~L~~l~~-~~-~~~t~~eLa~~l--~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 19 PTLLEFEK-KG-YEPSLAEIVKAS--GVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp HHHHHHHH-TT-CCCCHHHHHHHH--CCCHHHHHTTHHHHHHHTTSEE
T ss_pred HHHHHHHh-cC-CCCCHHHHHHHH--CCCchHHHHHHHHHHHHCCCee
Confidence 34445555 43 379999999999 999999 999999999999999
No 93
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=96.02 E-value=0.0067 Score=50.93 Aligned_cols=54 Identities=17% Similarity=0.215 Sum_probs=47.1
Q ss_pred CCChHHHHHHHHHHhhcC--CCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeee
Q 025493 33 SLTDHERLIYDVIRSNKQ--DMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEV 88 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag--~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~v 88 (252)
.||+-|+.|+..|.+... ......++|...+ +|++..+.+.|+.||++|+|..-
T Consensus 2 ~lt~~q~~il~~I~~~~~~~g~~~s~~eia~~l--gl~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 2 DLTERQRKVLLFIEEFIEKNGYPPSVREIARRF--RITPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHH--TSCHHHHHHHHHHHHHTTSEECC
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCHHHHHHHc--CCCcHHHHHHHHHHHHCCCEEec
Confidence 589999999999987322 3458999999999 99999999999999999999875
No 94
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=95.98 E-value=0.03 Score=41.12 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhc-----CCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeecccc
Q 025493 38 ERLIYDVIRSNK-----QDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93 (252)
Q Consensus 38 e~~vy~~I~~~a-----g~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~ 93 (252)
...|+++|.+ . |. -+..++|...+ ++....+.+-|+.||++|+|+.+..-..
T Consensus 6 ~~~IL~~I~~-~i~~~~g~-~psv~EIa~~l--gvS~~TVrr~L~~Le~kG~I~R~~ggr~ 62 (77)
T 2jt1_A 6 VTKIISIVQE-RQNMDDGA-PVKTRDIADAA--GLSIYQVRLYLEQLHDVGVLEKVNAGKG 62 (77)
T ss_dssp HHHHHHHHHH-HHHHHTTS-CEEHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEESCSSS
T ss_pred HHHHHHHHHH-HHhhccCC-CcCHHHHHHHH--CCCHHHHHHHHHHHHHCCcEEecCCCCC
Confidence 4578899988 6 33 48999999999 9999999999999999999999875443
No 95
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=95.97 E-value=0.02 Score=50.41 Aligned_cols=51 Identities=12% Similarity=0.279 Sum_probs=47.3
Q ss_pred CCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeee
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEV 88 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~v 88 (252)
+|++.+..|+..|.+ .| |+..++|.+++ ++++++++|.|+.||++|+|...
T Consensus 149 ~L~~~~~~IL~~L~~-~~--~~s~~eLA~~l--glsksTv~r~L~~Le~~GlV~r~ 199 (244)
T 2wte_A 149 DYSREEMKLLNVLYE-TK--GTGITELAKML--DKSEKTLINKIAELKKFGILTQK 199 (244)
T ss_dssp CCCHHHHHHHHHHHH-HT--CBCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHH-cC--CCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEe
Confidence 799999999999977 44 69999999999 99999999999999999999986
No 96
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=95.94 E-value=0.027 Score=41.71 Aligned_cols=59 Identities=5% Similarity=0.075 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChH-HHHHHHHHHHhcCCeeeeeccccCCeeeEEecc
Q 025493 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDN-IVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVE 103 (252)
Q Consensus 36 ~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~-~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~~ 103 (252)
+-...|+.++.. .| +.-.++|.+.+ ++... .|++.|..||+.|||... ..+|.+|-|++
T Consensus 11 ~~~~~IL~~Lk~-~g--~~ta~eiA~~L--git~~~aVr~hL~~Le~eGlV~~~----~~gRP~w~LT~ 70 (79)
T 1xmk_A 11 EIKEKICDYLFN-VS--DSSALNLAKNI--GLTKARDINAVLIDMERQGDVYRQ----GTTPPIWHLTD 70 (79)
T ss_dssp HHHHHHHHHHHH-TC--CEEHHHHHHHH--CGGGHHHHHHHHHHHHHTTSEEEE----CSSSCEEEECH
T ss_pred hHHHHHHHHHHH-cC--CcCHHHHHHHc--CCCcHHHHHHHHHHHHHCCCEEec----CCCCCCeEeCH
Confidence 446688899999 76 68899999999 99999 999999999999999854 23566776653
No 97
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=95.92 E-value=0.015 Score=43.93 Aligned_cols=46 Identities=4% Similarity=0.105 Sum_probs=36.8
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEe
Q 025493 131 SQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVK 184 (252)
Q Consensus 131 ~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~ 184 (252)
+.|+++|+.++.+|++|+++.+ .+|+.-|+.-|+.|+-.|+|++++
T Consensus 5 ~~Il~~L~~~g~vsv~eLA~~l--------~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 5 MEVRDMLALQGRMEAKQLSARL--------QTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHT--------TCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEEe
Confidence 4566677777777777776654 478899999999999999999986
No 98
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=95.90 E-value=0.015 Score=46.44 Aligned_cols=56 Identities=16% Similarity=0.356 Sum_probs=49.6
Q ss_pred CCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeecccc
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHN 93 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~ 93 (252)
.|++.++.|+.++.+ .| .+..++|..++ |++...+.+.|+.|+++|+|+.+..+-+
T Consensus 4 ~ld~~~~~il~~L~~-~~--~~s~~ela~~l--g~s~~tv~~~l~~L~~~G~i~~~~~~~d 59 (151)
T 2cyy_A 4 PLDEIDKKIIKILQN-DG--KAPLREISKIT--GLAESTIHERIRKLRESGVIKKFTAIID 59 (151)
T ss_dssp CCCHHHHHHHHHHHH-CT--TCCHHHHHHHH--CSCHHHHHHHHHHHHHHTSSCCCCCCCC
T ss_pred CcCHHHHHHHHHHHH-cC--CCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCeEEEEEEEC
Confidence 588989999999988 54 68999999999 9999999999999999999998765433
No 99
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=95.87 E-value=0.036 Score=44.23 Aligned_cols=55 Identities=5% Similarity=0.152 Sum_probs=48.9
Q ss_pred CCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccc
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH 92 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~ 92 (252)
.|++-++.|+.++.+ .| .+..++|..++ |++...+.+.|+.||++|+|+....+-
T Consensus 5 ~ld~~d~~il~~L~~-~~--~~s~~ela~~l--g~s~~tv~~~l~~L~~~G~i~~~~~~~ 59 (152)
T 2cg4_A 5 LIDNLDRGILEALMG-NA--RTAYAELAKQF--GVSPETIHVRVEKMKQAGIITGARIDV 59 (152)
T ss_dssp CCCHHHHHHHHHHHH-CT--TSCHHHHHHHH--TSCHHHHHHHHHHHHHHTSEEEEEEEE
T ss_pred ccCHHHHHHHHHHHH-cC--CCCHHHHHHHH--CcCHHHHHHHHHHHHHcCCcceEEEec
Confidence 488888999999988 44 68999999999 999999999999999999999877543
No 100
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=95.70 E-value=0.041 Score=48.17 Aligned_cols=46 Identities=11% Similarity=0.255 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeee
Q 025493 37 HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEV 88 (252)
Q Consensus 37 ~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~v 88 (252)
-...|+.+|.. ..+...+|...+ ++++..|+++|+.|+..|||...
T Consensus 13 ~R~~IL~~L~~----g~~s~~ELa~~l--glS~stVs~hL~~Le~aGLV~~~ 58 (232)
T 2qlz_A 13 VRRDLLSHLTC----MECYFSLLSSKV--SVSSTAVAKHLKIMEREGVLQSY 58 (232)
T ss_dssp HHHHHHHHHTT----TTTCSSSSCTTC--CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHh----CCCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEe
Confidence 45567777753 357778999999 99999999999999999999984
No 101
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=95.54 E-value=0.022 Score=43.53 Aligned_cols=60 Identities=8% Similarity=0.140 Sum_probs=47.9
Q ss_pred HHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEec
Q 025493 38 ERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAV 102 (252)
Q Consensus 38 e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~ 102 (252)
...|+..+.+ .++-..+|...++ ++++..+++.|+.||++|||....+-..+.++.|-|.
T Consensus 24 ~~~IL~~L~~----~~~~~~eLa~~l~-~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT 83 (112)
T 1z7u_A 24 KLSLMDELFQ----GTKRNGELMRALD-GITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLT 83 (112)
T ss_dssp HHHHHHHHHH----SCBCHHHHHHHST-TCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEEC
T ss_pred HHHHHHHHHh----CCCCHHHHHHHhc-cCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEEC
Confidence 3456666654 3688999999884 7999999999999999999999887766666666663
No 102
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=95.51 E-value=0.024 Score=42.24 Aligned_cols=61 Identities=8% Similarity=0.077 Sum_probs=51.6
Q ss_pred CCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEecc
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVE 103 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~~ 103 (252)
.+++-+..|++.+++ ||. =+-..+|-.++ +++...|+|+|+.|-+.+.|-+ |.|=.|-+.+
T Consensus 16 ~~~d~eekVLe~Lke-aG~-PlkageIae~~--GvdKKeVdKaik~LKkEgkI~S------PkRCyw~~~~ 76 (80)
T 2lnb_A 16 REGHLEQRILQVLTE-AGS-PVKLAQLVKEC--QAPKRELNQVLYRMKKELKVSL------TSPATWCLGG 76 (80)
T ss_dssp HHHHHHHHHHHHHHH-HTS-CEEHHHHHHHH--TSCHHHHHHHHHHHHHTTSEEE------EETTEEEESS
T ss_pred ccchHHHHHHHHHHH-cCC-CCCHHHHHHHH--CCCHHHHHHHHHHHHHcCCccC------CCCceeeCCC
Confidence 345568899999999 987 89999999999 9999999999999999999877 4566665543
No 103
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=95.42 E-value=0.053 Score=44.79 Aligned_cols=69 Identities=16% Similarity=0.350 Sum_probs=55.3
Q ss_pred CCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccC---Cee--eEEeccccc
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNK---GKK--HLMAVEFEP 106 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~---~rK--~YmL~~leP 106 (252)
.|++.++.|+.++.+ .| .+..++|..++ |+....+.+.|+.||++|+|+.+..+-++ +.. .|+...++|
T Consensus 24 ~ld~~d~~IL~~L~~-~~--~~s~~eLA~~l--glS~~tv~~rl~~L~~~G~I~~~~a~vd~~~~G~~~~a~v~v~~~~ 97 (171)
T 2e1c_A 24 PLDEIDKKIIKILQN-DG--KAPLREISKIT--GLAESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVKA 97 (171)
T ss_dssp CCCHHHHHHHHHHHH-CT--TCCHHHHHHHH--TSCHHHHHHHHHHHHHTTSSCCCCCCCCGGGGTCCEEEEEEEEECT
T ss_pred CCCHHHHHHHHHHHH-cC--CCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCeEeeeEEECHHHcCCCEEEEEEEEECc
Confidence 589999999999998 55 58999999999 99999999999999999999987654333 233 444445544
No 104
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=95.35 E-value=0.024 Score=44.33 Aligned_cols=57 Identities=16% Similarity=0.366 Sum_probs=48.0
Q ss_pred CChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCC
Q 025493 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKG 95 (252)
Q Consensus 34 l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~ 95 (252)
|++.+..|+..+.+ .| .+..++|.+++ +++.+.+.+.|+.||+.|+|+.....-.+.
T Consensus 2 ld~~~~~il~~L~~-~~--~~~~~ela~~l--g~s~~tv~~~l~~L~~~G~i~~~~~~~~~~ 58 (141)
T 1i1g_A 2 IDERDKIILEILEK-DA--RTPFTEIAKKL--GISETAVRKRVKALEEKGIIEGYTIKINPK 58 (141)
T ss_dssp CCSHHHHHHHHHHH-CT--TCCHHHHHHHH--TSCHHHHHHHHHHHHHHTSSCCCCCCCCSG
T ss_pred CCHHHHHHHHHHHH-cC--CCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEeccccccChH
Confidence 67778888888887 44 57899999999 999999999999999999998776544443
No 105
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=95.28 E-value=0.056 Score=43.88 Aligned_cols=69 Identities=12% Similarity=0.284 Sum_probs=54.4
Q ss_pred CChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCe-----eeEEecccccC
Q 025493 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGK-----KHLMAVEFEPS 107 (252)
Q Consensus 34 l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~r-----K~YmL~~lePs 107 (252)
||+.++.|+.++.+ .| .+..++|.+++ |+....+.+.|+.||+.|+|+.+..+-++.+ ..|+...+.|.
T Consensus 1 lD~~d~~il~~L~~-~~--~~s~~~la~~l--g~s~~tv~~rl~~L~~~g~i~~~~a~~~~~~lG~~~~a~v~v~v~~~ 74 (162)
T 3i4p_A 1 MDRLDRKILRILQE-DS--TLAVADLAKKV--GLSTTPCWRRIQKMEEDGVIRRRVALLDPVKVNTKVTVFVSIRTASH 74 (162)
T ss_dssp CCHHHHHHHHHHTT-CS--CSCHHHHHHHH--TCCHHHHHHHHHHHHHTTSSCCCCCCCCTTTTTCCEEEEEEEECCSC
T ss_pred CCHHHHHHHHHHHH-CC--CCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCeeeceeeeCHHHhcCcEEEEEEEEEcCC
Confidence 57788899999888 44 47999999999 9999999999999999999998776544332 34555555543
No 106
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=95.26 E-value=0.065 Score=39.51 Aligned_cols=51 Identities=14% Similarity=0.145 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhcCCCc-ccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeec
Q 025493 37 HERLIYDVIRSNKQDMG-IWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVN 90 (252)
Q Consensus 37 ~e~~vy~~I~~~ag~~G-Iw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vks 90 (252)
...+|.++|.. -+..+ +-..+|.+++ |++.+.++|+|=+|+++|+|..+.+
T Consensus 13 ~~~~v~~~i~~-L~~~~~~Ta~~IAkkL--g~sK~~vNr~LY~L~kkG~V~~~~~ 64 (75)
T 1sfu_A 13 IFSLVKKEVLS-LNTNDYTTAISLSNRL--KINKKKINQQLYKLQKEDTVKMVPS 64 (75)
T ss_dssp HHHHHHHHHHT-SCTTCEECHHHHHHHT--TCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHHHHHh-CCCCcchHHHHHHHHH--CCCHHHHHHHHHHHHHCCCEecCCC
Confidence 34477788888 77777 9999999999 9999999999999999999999865
No 107
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=95.21 E-value=0.11 Score=39.10 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeee
Q 025493 37 HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVV 89 (252)
Q Consensus 37 ~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vk 89 (252)
-...|+.++.+ .++-..+|...+ +++++.+++.|+.|+..|+|...+
T Consensus 27 ~r~~IL~~L~~----~~~~~~ela~~l--~is~stvs~~L~~L~~~Glv~~~~ 73 (106)
T 1r1u_A 27 NRIRIMELLSV----SEASVGHISHQL--NLSQSNVSHQLKLLKSVHLVKAKR 73 (106)
T ss_dssp HHHHHHHHHHH----CCBCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHh----CCCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCeEEEE
Confidence 34567777654 357899999999 999999999999999999999876
No 108
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=95.11 E-value=0.097 Score=38.80 Aligned_cols=47 Identities=2% Similarity=0.163 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeee
Q 025493 37 HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVV 89 (252)
Q Consensus 37 ~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vk 89 (252)
--..|+.++.+ | .....+|...+ +++++.+++.|+.|+..|+|...+
T Consensus 24 ~r~~Il~~L~~--~--~~~~~ela~~l--~is~~tvs~~L~~L~~~Glv~~~~ 70 (102)
T 3pqk_A 24 VRLMLVCTLVE--G--EFSVGELEQQI--GIGQPTLSQQLGVLRESGIVETRR 70 (102)
T ss_dssp HHHHHHHHHHT--C--CBCHHHHHHHH--TCCTTHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHh--C--CCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCeEEEE
Confidence 34456667643 3 38899999999 999999999999999999999864
No 109
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=95.05 E-value=0.05 Score=43.10 Aligned_cols=50 Identities=12% Similarity=0.223 Sum_probs=42.0
Q ss_pred CCcccHHHHHHHhhcC-CChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEec
Q 025493 51 DMGIWTRDMKRELKVN-LPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAV 102 (252)
Q Consensus 51 ~~GIw~~dik~~~~~~-l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~ 102 (252)
+.++-..+|...+ . +.+..|++.|+.||++|||.....-..+.++.|-|.
T Consensus 46 ~g~~~~~eLa~~l--~gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT 96 (131)
T 1yyv_A 46 DGTHRFSDLRRXM--GGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLT 96 (131)
T ss_dssp GCCEEHHHHHHHS--TTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEEC
T ss_pred cCCCCHHHHHHHh--ccCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEEC
Confidence 4568999999998 5 999999999999999999999877655556666553
No 110
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=95.03 E-value=0.093 Score=38.55 Aligned_cols=36 Identities=11% Similarity=0.223 Sum_probs=33.7
Q ss_pred CcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeee
Q 025493 52 MGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVV 89 (252)
Q Consensus 52 ~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vk 89 (252)
.++-..+|...+ +++++.+++.|+.|+..|+|...+
T Consensus 35 ~~~~~~ela~~l--~is~~tvs~~L~~L~~~Glv~~~~ 70 (98)
T 3jth_A 35 QELSVGELCAKL--QLSQSALSQHLAWLRRDGLVTTRK 70 (98)
T ss_dssp SCEEHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCeEEEE
Confidence 578999999999 999999999999999999998863
No 111
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=94.97 E-value=0.07 Score=40.48 Aligned_cols=45 Identities=9% Similarity=0.115 Sum_probs=38.1
Q ss_pred HHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeee
Q 025493 39 RLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVV 89 (252)
Q Consensus 39 ~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vk 89 (252)
..|+.++.+ .++-.++|...+ +++++.+++.|+.|++.|+|...+
T Consensus 28 ~~IL~~L~~----~~~s~~eLa~~l--gis~stvs~~L~~L~~~GlV~~~~ 72 (108)
T 2kko_A 28 LQILDLLAQ----GERAVEAIATAT--GMNLTTASANLQALKSGGLVEARR 72 (108)
T ss_dssp HHHHHHHTT----CCEEHHHHHHHH--TCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHc----CCcCHHHHHHHH--CcCHHHHHHHHHHHHHCCCeEEEE
Confidence 345555532 468999999999 999999999999999999999875
No 112
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=94.93 E-value=0.07 Score=38.18 Aligned_cols=59 Identities=10% Similarity=0.134 Sum_probs=49.2
Q ss_pred CCChHHHHHHHHHHhhcCCCcccHHHHHHHhh---cCCChHHHHHHHHHHHhcCCeeeeeccc
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELK---VNLPDNIVTKSIKSLQNKSLIKEVVNIH 92 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~---~~l~~~~l~k~lK~Le~k~lIK~vksv~ 92 (252)
.+|+....|++++.+ .+...+...+|-..++ ++++..+|.|.|+.|+++|+|..+..-.
T Consensus 14 ~~t~~r~~IL~~l~~-~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~~~~ 75 (83)
T 2fu4_A 14 KVTLPRLKILEVLQE-PDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEG 75 (83)
T ss_dssp CCCHHHHHHHHHHTS-GGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEECGG
T ss_pred CcCHHHHHHHHHHHh-CCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEeeCC
Confidence 478888999999988 6435789999988773 3799999999999999999999876543
No 113
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=94.90 E-value=0.052 Score=40.89 Aligned_cols=51 Identities=16% Similarity=0.218 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeec
Q 025493 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVN 90 (252)
Q Consensus 36 ~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vks 90 (252)
+....|+..+.. .|.. +...+|...+ |++++.|.++|+.|++.|+|...+.
T Consensus 18 ~~~l~Il~~l~~-~g~~-~s~~eLa~~l--gvs~~tV~~~L~~L~~~GlV~~~~~ 68 (110)
T 1q1h_A 18 DDVIDVLRILLD-KGTE-MTDEEIANQL--NIKVNDVRKKLNLLEEQGFVSYRKT 68 (110)
T ss_dssp STTHHHHHHHHH-HCSC-BCHHHHHHTT--TSCHHHHHHHHHHHHHHTSCEEEEE
T ss_pred hHHHHHHHHHHH-cCCC-CCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEEec
Confidence 344556666655 5644 8999999999 9999999999999999999988643
No 114
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=94.87 E-value=0.1 Score=40.41 Aligned_cols=47 Identities=9% Similarity=0.107 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeee
Q 025493 38 ERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVV 89 (252)
Q Consensus 38 e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vk 89 (252)
...|+.++.+ .| ++-..+|...+ +++++.+++.|+.|+..|+|...+
T Consensus 44 rl~IL~~L~~-~~--~~s~~eLa~~l--~is~stvs~~L~~L~~~Glv~~~~ 90 (122)
T 1u2w_A 44 RAKITYALCQ-DE--ELCVCDIANIL--GVTIANASHHLRTLYKQGVVNFRK 90 (122)
T ss_dssp HHHHHHHHHH-SS--CEEHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEC-
T ss_pred HHHHHHHHHH-CC--CcCHHHHHHHH--CcCHHHHHHHHHHHHHCCCeEEEE
Confidence 4457777765 43 58899999999 999999999999999999998854
No 115
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=94.82 E-value=0.053 Score=42.28 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=33.6
Q ss_pred CcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeee
Q 025493 52 MGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVV 89 (252)
Q Consensus 52 ~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vk 89 (252)
.++-.++|...+ +++...++++|+.||.+|+|...+
T Consensus 21 ~~~~~~ela~~l--~vs~~tvs~~l~~Le~~Glv~r~~ 56 (142)
T 1on2_A 21 GYARVSDIAEAL--AVHPSSVTKMVQKLDKDEYLIYEK 56 (142)
T ss_dssp SSCCHHHHHHHH--TSCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCCHHHHHHHh--CCCHHHHHHHHHHHHHCCCEEEee
Confidence 469999999999 999999999999999999998863
No 116
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=94.73 E-value=0.073 Score=43.08 Aligned_cols=62 Identities=8% Similarity=0.209 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhcCCCcccHHHHHHHhh------cCCChHHHHHHHHHHHhcCCeeeeecc--ccCCeeeEEec
Q 025493 37 HERLIYDVIRSNKQDMGIWTRDMKRELK------VNLPDNIVTKSIKSLQNKSLIKEVVNI--HNKGKKHLMAV 102 (252)
Q Consensus 37 ~e~~vy~~I~~~ag~~GIw~~dik~~~~------~~l~~~~l~k~lK~Le~k~lIK~vksv--~~~~rK~YmL~ 102 (252)
-+..|+.++.+ . ...-.+|.+++. .++...+|..+|+.||++|||.+.... ..+.||+|-|.
T Consensus 42 ~~~~IL~~L~~-~---~~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT 111 (145)
T 1xma_A 42 VDTIILSLLIE-G---DSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRIT 111 (145)
T ss_dssp HHHHHHHHHHH-C---CEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEEC
T ss_pred HHHHHHHHHHh-C---CCCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEEC
Confidence 57788888865 3 355556655541 149999999999999999999998764 45678888663
No 117
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=94.64 E-value=0.11 Score=41.51 Aligned_cols=51 Identities=12% Similarity=0.160 Sum_probs=42.0
Q ss_pred CCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEec
Q 025493 51 DMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAV 102 (252)
Q Consensus 51 ~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~ 102 (252)
+...-..+|.+.++ ++.++.|++.|+.||..|||.....-..+.+..|-|.
T Consensus 37 ~g~~rf~eL~~~l~-gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT 87 (131)
T 4a5n_A 37 DGKKRFNEFRRICP-SITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLT 87 (131)
T ss_dssp TSCBCHHHHHHHCT-TSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEEC
T ss_pred cCCcCHHHHHHHhc-ccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEEC
Confidence 44678899999985 8999999999999999999998876666556666663
No 118
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=94.54 E-value=0.18 Score=37.02 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeee
Q 025493 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVV 89 (252)
Q Consensus 36 ~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vk 89 (252)
+-...|+.+| . .++-..+|..++ ++++..+++.|+.|+..|+|...+
T Consensus 31 ~~r~~Il~~L-~----~~~~~~eLa~~l--~is~~tv~~~L~~L~~~Glv~~~~ 77 (96)
T 1y0u_A 31 PVRRKILRML-D----KGRSEEEIMQTL--SLSKKQLDYHLKVLEAGFCIERVG 77 (96)
T ss_dssp HHHHHHHHHH-H----TTCCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHH-c----CCCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEEC
Confidence 3455677777 4 358899999999 999999999999999999999865
No 119
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=94.52 E-value=0.17 Score=38.31 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=41.6
Q ss_pred ChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeee
Q 025493 35 TDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVV 89 (252)
Q Consensus 35 ~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vk 89 (252)
+..+..|+..+.+ .++-..+|...+ ++++..+++.|+.||+.|+|...+
T Consensus 31 ~~~~~~il~~L~~----~~~s~~ela~~l--~is~stvsr~l~~Le~~Glv~~~~ 79 (119)
T 2lkp_A 31 TPSRLMILTQLRN----GPLPVTDLAEAI--GMEQSAVSHQLRVLRNLGLVVGDR 79 (119)
T ss_dssp CHHHHHHHHHHHH----CCCCHHHHHHHH--SSCHHHHHHHHHHHHHHCSEEEEE
T ss_pred CHHHHHHHHHHHH----CCCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEEe
Confidence 4456667777765 368899999999 999999999999999999998765
No 120
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=94.45 E-value=0.085 Score=39.73 Aligned_cols=45 Identities=18% Similarity=0.254 Sum_probs=41.2
Q ss_pred HHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeee
Q 025493 40 LIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEV 88 (252)
Q Consensus 40 ~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~v 88 (252)
+||.++.. -.+ |+-.++|...+ ||+.+.+++.|..|+++|||...
T Consensus 9 Ii~~IL~~-i~~-~~~~t~La~~~--~ls~~~~~~~l~~L~~~GLI~~~ 53 (95)
T 1r7j_A 9 IIQAILEA-CKS-GSPKTRIMYGA--NLSYALTGRYIKMLMDLEIIRQE 53 (95)
T ss_dssp HHHHHHHH-HTT-CBCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHH-HHc-CCCHHHHHHHh--CcCHHHHHHHHHHHHHCCCeEEE
Confidence 78999988 654 49999999999 99999999999999999999986
No 121
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=94.39 E-value=0.083 Score=40.82 Aligned_cols=62 Identities=8% Similarity=0.094 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhcCCCcccHHHHHHHhhc------CCCh-HHHHHHHHHHHhcCCeeeeecc-ccCCeeeEEec
Q 025493 37 HERLIYDVIRSNKQDMGIWTRDMKRELKV------NLPD-NIVTKSIKSLQNKSLIKEVVNI-HNKGKKHLMAV 102 (252)
Q Consensus 37 ~e~~vy~~I~~~ag~~GIw~~dik~~~~~------~l~~-~~l~k~lK~Le~k~lIK~vksv-~~~~rK~YmL~ 102 (252)
-+..|+.++.+ . ...-.+|.+.... ++.+ .+|..+|+.||++|||.+...- ..+.||+|-|.
T Consensus 14 ~~~~IL~~L~~-~---~~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT 83 (118)
T 2esh_A 14 LASTILLLVAE-K---PSHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRIT 83 (118)
T ss_dssp HHHHHHHHHHH-S---CBCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEEC
T ss_pred HHHHHHHHHHc-C---CCCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEC
Confidence 45667777755 3 2445566655510 2888 9999999999999999998754 44678888663
No 122
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=94.24 E-value=0.053 Score=40.53 Aligned_cols=44 Identities=18% Similarity=0.230 Sum_probs=37.8
Q ss_pred HHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeee
Q 025493 39 RLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEV 88 (252)
Q Consensus 39 ~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~v 88 (252)
+.|+.++.+ .| +..++|.+++ +++...+++.|+.||..|+|+..
T Consensus 20 ~~IL~lL~~-~g---~sa~eLAk~L--giSk~aVr~~L~~Le~eG~I~~~ 63 (82)
T 1oyi_A 20 CEAIKTIGI-EG---ATAAQLTRQL--NMEKREVNKALYDLQRSAMVYSS 63 (82)
T ss_dssp HHHHHHHSS-ST---EEHHHHHHHS--SSCHHHHHHHHHHHHHHTSSEEC
T ss_pred HHHHHHHHH-cC---CCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEeC
Confidence 345566665 44 9999999999 99999999999999999999985
No 123
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=94.10 E-value=0.06 Score=41.04 Aligned_cols=62 Identities=15% Similarity=0.237 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhcCCCccc-HHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccc-cCCeeeEEe
Q 025493 37 HERLIYDVIRSNKQDMGIW-TRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIH-NKGKKHLMA 101 (252)
Q Consensus 37 ~e~~vy~~I~~~ag~~GIw-~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~-~~~rK~YmL 101 (252)
-+..|+.++.+ ....|-- .++|.... ++...+|..+|+.||++|||.+..... .+.|++|-|
T Consensus 10 l~~~IL~~L~~-~~~~gyel~~~l~~~~--~i~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~L 73 (108)
T 3l7w_A 10 IEYLILAIVSK-HDSYGYDISQTIKLIA--SIKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHL 73 (108)
T ss_dssp HHHHHHHHHHH-SCEEHHHHHHHHTTTC--CCCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHHc-CCCcHHHHHHHHHHHh--CCCcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEE
Confidence 35677777766 4333321 12333336 899999999999999999999987543 344677765
No 124
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=94.10 E-value=0.11 Score=43.83 Aligned_cols=50 Identities=18% Similarity=0.277 Sum_probs=43.7
Q ss_pred CChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeee
Q 025493 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVV 89 (252)
Q Consensus 34 l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vk 89 (252)
+++-+..|+.++.+ .++..++|..++ ++++..+++.|+.||+.|+|+...
T Consensus 18 ~d~~~~~IL~~L~~----~~~s~~eLA~~l--glS~stv~~~l~~Le~~GlI~~~~ 67 (192)
T 1uly_A 18 LEDTRRKILKLLRN----KEMTISQLSEIL--GKTPQTIYHHIEKLKEAGLVEVKR 67 (192)
T ss_dssp HSHHHHHHHHHHTT----CCBCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHHHHc----CCCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEEe
Confidence 46667788888863 369999999999 999999999999999999999984
No 125
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=94.00 E-value=0.091 Score=40.11 Aligned_cols=67 Identities=13% Similarity=0.218 Sum_probs=49.0
Q ss_pred CCCChHHHHHHHHHHhhcCC--Cc-ccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEec
Q 025493 32 DSLTDHERLIYDVIRSNKQD--MG-IWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAV 102 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~--~G-Iw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~ 102 (252)
+-|+.-...|+.++.. .+. .| =-.++|..+.+.++...+|..+|+.||++|+|.+.. .+.||+|-+.
T Consensus 5 ~~~~~~~~~IL~lL~~-~~~~~~g~~i~~ei~~~~~~~is~GtlYp~L~rLe~~GlI~~~~---~~~rk~Y~iT 74 (99)
T 2co5_A 5 KYMRINYYIILKVLVI-NGSRLEKKRLRSEILKRFDIDISDGVLYPLIDSLIDDKILREEE---APDGKVLFLT 74 (99)
T ss_dssp CCCHHHHHHHHHHHHH-TTTEEEGGGHHHHHHHHHCCBCCHHHHHHHHHHHHHTTSEEEEC---CTTSCEEEEC
T ss_pred HhhcccHHHHHHHHHh-cCCCCcHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHCCCEEEee---CCCcEEEEEC
Confidence 3466667788888865 321 22 234566666633689999999999999999999986 6789998773
No 126
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=93.97 E-value=0.17 Score=36.12 Aligned_cols=53 Identities=6% Similarity=0.067 Sum_probs=45.7
Q ss_pred HHHHHHHhhhC--CCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 130 KSQCLKQIIKL--KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 130 ~~~~~~~i~~~--~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
+..|+.+|... +.+|++||++.+++.+ ..++..-|.+.|+.|+-.|.|.++..
T Consensus 19 r~~IL~~l~~~~~~~~s~~el~~~l~~~~---~~is~~TVyR~L~~L~~~Glv~~~~~ 73 (83)
T 2fu4_A 19 RLKILEVLQEPDNHHVSAEDLYKRLIDMG---EEIGLATVYRVLNQFDDAGIVTRHNF 73 (83)
T ss_dssp HHHHHHHHTSGGGSSBCHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHhC---CCCCHhhHHHHHHHHHHCCCeEEEee
Confidence 55788888765 6899999999998876 36789999999999999999998864
No 127
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=93.94 E-value=0.13 Score=39.28 Aligned_cols=47 Identities=13% Similarity=0.217 Sum_probs=37.3
Q ss_pred CCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEe
Q 025493 50 QDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMA 101 (252)
Q Consensus 50 g~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL 101 (252)
|...+-..+|.+.++ ++.++.|++.|+.||+.|||..... .+..|-|
T Consensus 39 g~~~~~~~eL~~~l~-gis~~~ls~~L~~Le~~GlV~r~~~----r~~~y~L 85 (111)
T 3df8_A 39 GSTRQNFNDIRSSIP-GISSTILSRRIKDLIDSGLVERRSG----QITTYAL 85 (111)
T ss_dssp SSSCBCHHHHHHTST-TCCHHHHHHHHHHHHHTTSEEEEES----SSEEEEE
T ss_pred CCCCCCHHHHHHHcc-CCCHHHHHHHHHHHHHCCCEEEeec----CcEEEEE
Confidence 444344899999983 6999999999999999999998765 3455555
No 128
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=93.94 E-value=0.15 Score=39.25 Aligned_cols=47 Identities=13% Similarity=0.154 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeee
Q 025493 37 HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVV 89 (252)
Q Consensus 37 ~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vk 89 (252)
-...|+.++.+ | +....+|...+ +++++.+++.|+.|+..|||...+
T Consensus 22 ~r~~IL~~L~~--~--~~~~~eLa~~l--gis~stvs~~L~~L~~~GlV~~~~ 68 (118)
T 2jsc_A 22 TRCRILVALLD--G--VCYPGQLAAHL--GLTRSNVSNHLSCLRGCGLVVATY 68 (118)
T ss_dssp HHHHHHHHHHT--T--CCSTTTHHHHH--SSCHHHHHHHHHHHTTTTSEEEEE
T ss_pred HHHHHHHHHHc--C--CCCHHHHHHHH--CcCHHHHHHHHHHHHHCCceEEEE
Confidence 34567777654 2 46778999999 999999999999999999998865
No 129
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=93.93 E-value=0.45 Score=40.35 Aligned_cols=110 Identities=11% Similarity=0.075 Sum_probs=70.7
Q ss_pred HHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEecccccCCCccCCccccC
Q 025493 39 RLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSE 118 (252)
Q Consensus 39 ~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~~lePs~eiTGG~wy~d 118 (252)
+.||.+.+ .+.++-+++|...+ ++.+..++++|+.||++|||...++ +. + .|+|.
T Consensus 9 ~~I~~l~~---~~~~~~~~~lA~~l--~vs~~tvs~~l~~Le~~GlV~r~~~-----~~-i---~LT~~----------- 63 (214)
T 3hrs_A 9 KCLYELGT---RHNKITNKEIAQLM--QVSPPAVTEMMKKLLAEELLIKDKK-----AG-Y---LLTDL----------- 63 (214)
T ss_dssp HHHHHTTS---SCSCCCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEETT-----TE-E---EECHH-----------
T ss_pred HHHHHHHh---cCCCcCHHHHHHHH--CCChhHHHHHHHHHHHCCCEEEecC-----CC-e---EECHH-----------
Confidence 34555433 35689999999999 9999999999999999999998653 11 1 12222
Q ss_pred CcCCHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhh
Q 025493 119 GSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVL 176 (252)
Q Consensus 119 ~e~D~efV~~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVy 176 (252)
|.=-.+.+-...+....|+...-..+.+++++.-.... -.+|++-+++|-..|-+
T Consensus 64 G~~~~~~~~~~h~~~e~~l~~~lg~~~~e~~~~a~~lE---h~~s~~~~~~l~~~l~~ 118 (214)
T 3hrs_A 64 GLKLVSDLYRKHRLIEVFLVHHLGYTTEEIHEEAEVLE---HTVSDHFVERLDQLLDY 118 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH---TTSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHh---ccCCHHHHHHHHHHhCC
Confidence 21112222233346667776654566777766655443 34677777777776644
No 130
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=93.82 E-value=0.2 Score=38.31 Aligned_cols=56 Identities=9% Similarity=0.102 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEe
Q 025493 37 HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMA 101 (252)
Q Consensus 37 ~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL 101 (252)
--..|+.++.+ .++-..+|...+ ++++..+++.|+.|+..|||...+. ..++.|-|
T Consensus 19 ~R~~Il~~L~~----~~~~~~eLa~~l--~is~~tvs~hL~~L~~~GlV~~~~~---gr~~~y~l 74 (118)
T 3f6o_A 19 TRRAVLGRLSR----GPATVSELAKPF--DMALPSFMKHIHFLEDSGWIRTHKQ---GRVRTCAI 74 (118)
T ss_dssp HHHHHHHHHHT----CCEEHHHHHTTC--CSCHHHHHHHHHHHHHTTSEEEEEE---TTEEEEEE
T ss_pred HHHHHHHHHHh----CCCCHHHHHHHh--CcCHHHHHHHHHHHHHCCCeEEEec---CCEEEEEE
Confidence 34556666653 457899999999 9999999999999999999998665 23444544
No 131
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=93.75 E-value=0.27 Score=41.79 Aligned_cols=61 Identities=20% Similarity=0.322 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeecc--ccCCeeeEEec
Q 025493 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNI--HNKGKKHLMAV 102 (252)
Q Consensus 36 ~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv--~~~~rK~YmL~ 102 (252)
+....|+.++.. .++...+|...+ +++++.|+++|+.|+..|||...+.. ..+.+++|-+.
T Consensus 15 ~~rl~IL~~L~~----~~~s~~eLa~~l--~is~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt 77 (202)
T 2p4w_A 15 ETRRRILFLLTK----RPYFVSELSREL--GVGQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIK 77 (202)
T ss_dssp HHHHHHHHHHHH----SCEEHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEEC
T ss_pred HHHHHHHHHHHh----CCCCHHHHHHHH--CcCHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEC
Confidence 345667777744 358999999999 99999999999999999999997653 22445666553
No 132
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=93.68 E-value=0.19 Score=38.86 Aligned_cols=62 Identities=13% Similarity=0.184 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhhcCCCcccHHHHHHHh---hc-CCChHHHHHHHHHHHhcCCeeeeecc--ccCCeeeEEec
Q 025493 37 HERLIYDVIRSNKQDMGIWTRDMKREL---KV-NLPDNIVTKSIKSLQNKSLIKEVVNI--HNKGKKHLMAV 102 (252)
Q Consensus 37 ~e~~vy~~I~~~ag~~GIw~~dik~~~---~~-~l~~~~l~k~lK~Le~k~lIK~vksv--~~~~rK~YmL~ 102 (252)
-+.+|+.++.+ .-. .--+|.++. +. ++...+|..+|+.||++|||.+.... ..+.||+|-|.
T Consensus 10 l~~~IL~~L~~-~~~---~Gyei~~~l~~~~~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT 77 (115)
T 4esb_A 10 LEGCILYIISQ-EEV---YGYELSTKLNKHGFTFVSEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHIT 77 (115)
T ss_dssp HHHHHHHHHHH-SCE---EHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEEC
T ss_pred HHHHHHHHHHc-CCC---CHHHHHHHHHHcCCCCCCcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEEC
Confidence 35677777766 433 334455544 11 58999999999999999999987643 34678888763
No 133
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=93.63 E-value=0.098 Score=48.04 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeecc
Q 025493 37 HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNI 91 (252)
Q Consensus 37 ~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv 91 (252)
.++.|+++|.+ .| .+.+.+|.+++ +|...+++++++.|++.|+|++....
T Consensus 17 n~~~il~~l~~-~~--~~sr~~la~~~--~ls~~tv~~~v~~L~~~g~i~~~~~~ 66 (406)
T 1z6r_A 17 NAGAVYRLIDQ-LG--PVSRIDLSRLA--QLAPASITKIVHEMLEAHLVQELEIK 66 (406)
T ss_dssp HHHHHHHHHHS-SC--SCCHHHHHHHT--TCCHHHHHHHHHHHHHHTSEEEC---
T ss_pred HHHHHHHHHHH-cC--CcCHHHHHHHH--CCCHHHHHHHHHHHHHCCcEEeeccc
Confidence 46789999998 55 59999999999 99999999999999999999997543
No 134
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=93.52 E-value=0.17 Score=43.18 Aligned_cols=54 Identities=13% Similarity=0.182 Sum_probs=45.5
Q ss_pred CChHHHHHHHHHHhhcCC----CcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeec
Q 025493 34 LTDHERLIYDVIRSNKQD----MGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVN 90 (252)
Q Consensus 34 l~~~e~~vy~~I~~~ag~----~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vks 90 (252)
+++.+..++..|.. .|. .|+...++..++ ++.+..|++.|+.||+++||...++
T Consensus 5 ~~~~~l~~l~~l~~-~~~l~~~~~~s~s~aA~~L--~isq~avSr~I~~LE~~~L~~R~~~ 62 (230)
T 3cta_A 5 TDDQYYRAIKKIKE-AAEASNRAYLTSSKLADML--GISQQSASRIIIDLEKNGYITRTVT 62 (230)
T ss_dssp --CHHHHHHHHHHH-HTTTSSEEECCHHHHHHHH--TSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cHHHHHHHHHHHHH-hcccccCCCcCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEEEEc
Confidence 45577788888877 654 788899999999 9999999999999999999998754
No 135
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=93.32 E-value=0.11 Score=40.43 Aligned_cols=62 Identities=15% Similarity=0.226 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhhcCCCcccHHHHHHHh---hc-CCChHHHHHHHHHHHhcCCeeeeecc--ccCCeeeEEec
Q 025493 37 HERLIYDVIRSNKQDMGIWTRDMKREL---KV-NLPDNIVTKSIKSLQNKSLIKEVVNI--HNKGKKHLMAV 102 (252)
Q Consensus 37 ~e~~vy~~I~~~ag~~GIw~~dik~~~---~~-~l~~~~l~k~lK~Le~k~lIK~vksv--~~~~rK~YmL~ 102 (252)
-+.+|+.++.+ .-..|- +|.++. +. ++...+|..+|+.||++|||.+.... ..|.||+|-|.
T Consensus 14 l~~~IL~lL~~-~p~~Gy---ei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT 81 (116)
T 3hhh_A 14 LEGLVLAIIQR-KETYGY---EITKILNDQGFTEIVEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLT 81 (116)
T ss_dssp HHHHHHHHHHH-SCBCHH---HHHHHHHTTSCSSCCHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEEC
T ss_pred HHHHHHHHHhc-CCCCHH---HHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEEC
Confidence 35667777766 443343 444443 11 68999999999999999999987642 45678888663
No 136
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=93.28 E-value=0.16 Score=39.32 Aligned_cols=62 Identities=16% Similarity=0.227 Sum_probs=44.1
Q ss_pred HHHHHHhhcCCCcccH-HHHHHHhhc-CCChHHHHHHHHHHHhcCCeeeeecc---ccCCeeeEEecc
Q 025493 41 IYDVIRSNKQDMGIWT-RDMKRELKV-NLPDNIVTKSIKSLQNKSLIKEVVNI---HNKGKKHLMAVE 103 (252)
Q Consensus 41 vy~~I~~~ag~~GIw~-~dik~~~~~-~l~~~~l~k~lK~Le~k~lIK~vksv---~~~~rK~YmL~~ 103 (252)
|+.++.+ .-..|--. +.|...++. ++...+|..+|+.||++|+|.+.... ..+.||+|-|.+
T Consensus 27 IL~lL~~-~~~~Gyei~~~l~~~~~~~~is~gtLY~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~ 93 (115)
T 2dql_A 27 ILYVLLQ-GESYGTELIQQLETEHPTYRLSDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSP 93 (115)
T ss_dssp HHHHHTT-SCBCHHHHHHHHHHHCTTEECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECG
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHCCCEEEEeeecCCCCCCcEEEEECH
Confidence 7777766 54455443 344443321 69999999999999999999987654 356789987743
No 137
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=93.28 E-value=0.16 Score=40.19 Aligned_cols=45 Identities=31% Similarity=0.382 Sum_probs=37.4
Q ss_pred HHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeee
Q 025493 40 LIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVV 89 (252)
Q Consensus 40 ~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vk 89 (252)
.|+.+|.. .| ++..++|...+ ++.+..|+++|+.||.+|||...+
T Consensus 44 ~i~~~l~~-~~--~~~~~~la~~l--~vs~~tvs~~l~~Le~~Glv~r~~ 88 (155)
T 2h09_A 44 LISDLIRE-VG--EARQVDMAARL--GVSQPTVAKMLKRLATMGLIEMIP 88 (155)
T ss_dssp HHHHHHHH-HS--CCCHHHHHHHH--TSCHHHHHHHHHHHHHTTCEEEET
T ss_pred HHHHHHHh-CC--CcCHHHHHHHh--CcCHHHHHHHHHHHHHCCCEEEec
Confidence 34446666 44 57889999999 999999999999999999998763
No 138
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=93.21 E-value=0.21 Score=36.80 Aligned_cols=49 Identities=12% Similarity=0.217 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHH-HHHHHHHHHhhcCeeEEE
Q 025493 127 KVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQ-QIEEIVRAVVLDNQIMEV 183 (252)
Q Consensus 127 ~~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~-di~~IL~tLVyDgkIE~v 183 (252)
...++.|+.||.+++..|+.+|++.+. ++.. .|.+.|..|.-||.|++.
T Consensus 10 ~~~~~~IL~~Lk~~g~~ta~eiA~~Lg--------it~~~aVr~hL~~Le~eGlV~~~ 59 (79)
T 1xmk_A 10 AEIKEKICDYLFNVSDSSALNLAKNIG--------LTKARDINAVLIDMERQGDVYRQ 59 (79)
T ss_dssp HHHHHHHHHHHHHTCCEEHHHHHHHHC--------GGGHHHHHHHHHHHHHTTSEEEE
T ss_pred hhHHHHHHHHHHHcCCcCHHHHHHHcC--------CCcHHHHHHHHHHHHHCCCEEec
Confidence 477899999999999999999998764 6777 999999999999999964
No 139
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=93.09 E-value=0.34 Score=37.60 Aligned_cols=36 Identities=17% Similarity=0.340 Sum_probs=33.4
Q ss_pred CcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeee
Q 025493 52 MGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVV 89 (252)
Q Consensus 52 ~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vk 89 (252)
.+.-..+|...+ ++++..+++.|+.||+.|+|...+
T Consensus 58 ~~~s~~ela~~l--gis~stvs~~L~~Le~~Glv~~~~ 93 (122)
T 1r1t_A 58 SELCVGDLAQAI--GVSESAVSHQLRSLRNLRLVSYRK 93 (122)
T ss_dssp CCBCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCeEEEE
Confidence 468899999999 999999999999999999999865
No 140
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=93.08 E-value=0.32 Score=37.78 Aligned_cols=61 Identities=16% Similarity=0.268 Sum_probs=40.4
Q ss_pred HHHHHHHHHhhcCCCcccHHHHHHHh---hc-CCChHHHHHHHHHHHhcCCeeeeecc--ccCCeeeEEec
Q 025493 38 ERLIYDVIRSNKQDMGIWTRDMKREL---KV-NLPDNIVTKSIKSLQNKSLIKEVVNI--HNKGKKHLMAV 102 (252)
Q Consensus 38 e~~vy~~I~~~ag~~GIw~~dik~~~---~~-~l~~~~l~k~lK~Le~k~lIK~vksv--~~~~rK~YmL~ 102 (252)
+.+|+.++.+ .-..|- +|.++. +. ++...+|..+|+.||++|||.+.... ..+.||+|-|.
T Consensus 13 ~~~IL~lL~~-~p~~Gy---ei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT 79 (117)
T 4esf_A 13 EGCVLEIISR-RETYGY---EITRHLNDLGFTEVVEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLN 79 (117)
T ss_dssp HHHHHHHHHH-SCBCHH---HHHHHHHHHTCTTCCHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEEC
T ss_pred HHHHHHHHHc-CCCCHH---HHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEEC
Confidence 4566666665 433343 333332 22 68999999999999999999997642 45678888763
No 141
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=93.07 E-value=0.21 Score=38.28 Aligned_cols=50 Identities=24% Similarity=0.330 Sum_probs=47.2
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHH-HhhcCCChHHHHHHHHHHHhcCCee
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKR-ELKVNLPDNIVTKSIKSLQNKSLIK 86 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~-~~~~~l~~~~l~k~lK~Le~k~lIK 86 (252)
.+|+.-|.-|+-.|.. .| .+..++|.. .. .|..+.|+|.|+.|+++|||.
T Consensus 12 ~~L~~~QfsiL~~L~~-~~--~~t~~~Lae~~l--~~drstvsrnl~~L~r~GlVe 62 (95)
T 1bja_A 12 DVLNEKTATILITIAK-KD--FITAAEVREVHP--DLGNAVVNSNIGVLIKKGLVE 62 (95)
T ss_dssp TSSCHHHHHHHHHHHH-ST--TBCHHHHHHTCT--TSCHHHHHHHHHHHHTTTSEE
T ss_pred cCCCHHHHHHHHHHHH-CC--CCCHHHHHHHHh--cccHHHHHHHHHHHHHCCCee
Confidence 5899999999999988 66 999999999 99 999999999999999999998
No 142
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=93.07 E-value=0.19 Score=39.21 Aligned_cols=53 Identities=13% Similarity=0.305 Sum_probs=45.5
Q ss_pred CCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeee
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEV 88 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~v 88 (252)
-|++-++.|+.++.+ .| .+...+|...+..+++...|++.|+.|+..|||...
T Consensus 10 ~md~~d~~IL~~L~~-~g--~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~ 62 (111)
T 3b73_A 10 WMTIWDDRILEIIHE-EG--NGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPL 62 (111)
T ss_dssp TCCHHHHHHHHHHHH-HS--CBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEEC
T ss_pred hcCHHHHHHHHHHHH-cC--CCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEec
Confidence 378888999999988 66 688999999773357999999999999999999984
No 143
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=92.94 E-value=0.24 Score=39.72 Aligned_cols=64 Identities=20% Similarity=0.247 Sum_probs=47.3
Q ss_pred HHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEecccccCCCcc
Q 025493 40 LIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDIS 111 (252)
Q Consensus 40 ~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~~lePs~eiT 111 (252)
.++-.+..+.++.-+..++|..+. +++.+.|.|+|..|.+.|+|++++..+. =|.|. .|.++||
T Consensus 15 ~~L~~La~~~~~~~~s~~~IA~~~--~i~~~~l~kil~~L~~aGlv~s~rG~~G----Gy~La--r~p~~It 78 (143)
T 3t8r_A 15 TLMISLAKKEGQGCISLKSIAEEN--NLSDLYLEQLVGPLRNAGLIRSVRGAKG----GYQLR--VPAEEIS 78 (143)
T ss_dssp HHHHHHHTTTTSCCEEHHHHHHHT--TCCHHHHHHHHHHHHHTTSEEECSSSSS----EEEES--SCGGGCB
T ss_pred HHHHHHHhCCCCCCcCHHHHHHHH--CcCHHHHHHHHHHHHHCCEEEecCCCCC----Ceeec--CCcccCC
Confidence 344445552344568999999999 9999999999999999999998754432 37774 4555555
No 144
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=92.83 E-value=0.45 Score=39.50 Aligned_cols=50 Identities=8% Similarity=0.147 Sum_probs=41.1
Q ss_pred CCcccHHHHHHHhhcC-CChHHHHHHHHHHHhcCCeeeeec--cccCCeeeEEec
Q 025493 51 DMGIWTRDMKRELKVN-LPDNIVTKSIKSLQNKSLIKEVVN--IHNKGKKHLMAV 102 (252)
Q Consensus 51 ~~GIw~~dik~~~~~~-l~~~~l~k~lK~Le~k~lIK~vks--v~~~~rK~YmL~ 102 (252)
+.+....+|...+ + +++..+++.|+.|++-|||+.++- +.....|.|-+.
T Consensus 34 ~~~~~~~~l~~~l--~~~~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~ 86 (182)
T 4g6q_A 34 GRSLTTRELAELL--PDVATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLN 86 (182)
T ss_dssp TSCEEHHHHHHHC--TTBCHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEEC
T ss_pred hCCCCHHHHHHHh--cCCCHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEec
Confidence 4578899999998 6 999999999999999999998874 344346788653
No 145
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=92.76 E-value=2.1 Score=37.36 Aligned_cols=114 Identities=6% Similarity=0.067 Sum_probs=86.9
Q ss_pred CCCChHHHHHHHHHHhh---cCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEecccccCC
Q 025493 32 DSLTDHERLIYDVIRSN---KQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSK 108 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~---ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~~lePs~ 108 (252)
..+++++..+.+.|... +|=.--|.+||-..+ +++...+..+|+.|...|.|-.|. .-+|
T Consensus 133 ~~~~~~~~~~~~~i~~~~~~~g~~pp~~~dl~~~l--~~~~~~~~~~l~~l~~~g~lv~l~------~~~~--------- 195 (258)
T 1lva_A 133 PSFSETQKKLLKDLEDKYRVSRWQPPSFKEVAGSF--NLDPSELEELLHYLVREGVLVKIN------DEFY--------- 195 (258)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSCCBHHHHHHHT--TCCHHHHHHHHHHHHHTTSEEESS------SSBE---------
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHhHh--CCCHHHHHHHHHHHHHCCCEEEec------CCeE---------
Confidence 35777666655555432 444445999999999 999999999999999999988862 3344
Q ss_pred CccCCccccCCcCCHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEE
Q 025493 109 DISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEV 183 (252)
Q Consensus 109 eiTGG~wy~d~e~D~efV~~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v 183 (252)
|..+.++.+.+.+..++ .++..|+.+..+-+. +|-.=.-.||+-|=-.|...++
T Consensus 196 ------------~~~~~~~~~~~~l~~~~-~~~~it~a~~Rd~lg--------~SRK~aIplLE~~Dr~g~TrR~ 249 (258)
T 1lva_A 196 ------------WHRQALGEAREVIKNLA-STGPFGLAEARDALG--------SSRKYVLPLLEYLDQVKFTRRV 249 (258)
T ss_dssp ------------EEHHHHHHHHHHHHHHH-TTSCBCHHHHHHHHT--------CCHHHHHHHHHHHHHTTSEEEE
T ss_pred ------------EcHHHHHHHHHHHHHHH-hcCCcCHHHHHHHhC--------CcHHHHHHHHHHHhhcCceeee
Confidence 34778999999999999 999999999888764 3455566778877777766654
No 146
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=92.64 E-value=0.39 Score=38.78 Aligned_cols=60 Identities=13% Similarity=0.078 Sum_probs=47.5
Q ss_pred CCChHHHHHHHHHHhhcCCCc-----------ccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEe
Q 025493 33 SLTDHERLIYDVIRSNKQDMG-----------IWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMA 101 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~G-----------Iw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL 101 (252)
..+.++++..-+++- +...| +.+.+|..-+ |++...|+|+|+.|+++|+|+.- ++++.++
T Consensus 116 ~~~~~~Rl~~~L~~l-~~~~~~~~~~~~~~~~~t~~~lA~~l--g~sr~tvsR~l~~L~~~g~I~~~------~~~i~i~ 186 (202)
T 2zcw_A 116 TQRLKNRMAAALLEL-SETPLAHEEEGKVVLKATHDELAAAV--GSVRETVTKVIGELAREGYIRSG------YGKIQLL 186 (202)
T ss_dssp HCCHHHHHHHHHHHH-TTSTTEEEETTEEEEECCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEE------TTEEEES
T ss_pred cCCHHHHHHHHHHHH-HHhcCCCCCCcEEccCCCHHHHHHHh--CCCHHHHHHHHHHHHHCCCEEeC------CCEEEEe
Confidence 457788887777765 65444 6789999999 99999999999999999999852 3556654
No 147
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=92.54 E-value=0.9 Score=39.69 Aligned_cols=106 Identities=12% Similarity=0.260 Sum_probs=78.1
Q ss_pred CCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEecccccCCCccCCccccCCcCCHHHHHHH
Q 025493 50 QDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVV 129 (252)
Q Consensus 50 g~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~~lePs~eiTGG~wy~d~e~D~efV~~l 129 (252)
=..|+-...|+.+..+.++...+..+|..|+..|.|+.... .+-+.+.+| .|+.+ .+.+
T Consensus 84 ~~~G~~~~~L~~~~~~~~~~~l~~~ll~~l~~~g~l~~~~~-------~v~l~~h~~-------------~~~~~-~~~~ 142 (258)
T 1lva_A 84 LRPGLAREELRSRYFSRLPARVYQALLEEWSREGRLQLAAN-------TVALAGFTP-------------SFSET-QKKL 142 (258)
T ss_dssp TSSCEEHHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEETT-------EEEETTCCC-------------CCCHH-HHHH
T ss_pred CccCCCHHHHHHhccccCCHHHHHHHHHHHHHCCCEEecCC-------EEeCCCCcc-------------CCCHH-HHHH
Confidence 45899999999997335899999999999999999887432 222322222 34443 4566
Q ss_pred HHHHHHHhhhCC--CCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEe
Q 025493 130 KSQCLKQIIKLK--VATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVK 184 (252)
Q Consensus 130 ~~~~~~~i~~~~--~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~ 184 (252)
.+.+...+...+ .|++.|+.+-+ .++.++++++|..|+-.|.|.++.
T Consensus 143 ~~~i~~~~~~~g~~pp~~~dl~~~l--------~~~~~~~~~~l~~l~~~g~lv~l~ 191 (258)
T 1lva_A 143 LKDLEDKYRVSRWQPPSFKEVAGSF--------NLDPSELEELLHYLVREGVLVKIN 191 (258)
T ss_dssp HHHHHHHHHHHTTSCCBHHHHHHHT--------TCCHHHHHHHHHHHHHTTSEEESS
T ss_pred HHHHHHHHHHCCCCCCCHHHHHhHh--------CCCHHHHHHHHHHHHHCCCEEEec
Confidence 677777776655 67888876532 367889999999999999999875
No 148
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=92.50 E-value=0.41 Score=36.94 Aligned_cols=64 Identities=11% Similarity=0.163 Sum_probs=42.0
Q ss_pred HHHHHHHHHhhcCCCcccH-HHHHHHhhc--CCChHHHHHHHHHHHhcCCeeeeec--cccCCeeeEEec
Q 025493 38 ERLIYDVIRSNKQDMGIWT-RDMKRELKV--NLPDNIVTKSIKSLQNKSLIKEVVN--IHNKGKKHLMAV 102 (252)
Q Consensus 38 e~~vy~~I~~~ag~~GIw~-~dik~~~~~--~l~~~~l~k~lK~Le~k~lIK~vks--v~~~~rK~YmL~ 102 (252)
+..|+.++.+ .-..|--. +.|...++. ++...+|..+|+.||++|||.+... ...+.||+|-|.
T Consensus 14 ~~~IL~~L~~-~~~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT 82 (116)
T 3f8b_A 14 NVILLNVLKQ-GDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLT 82 (116)
T ss_dssp HHHHHHHHHH-CCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEEC
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEEC
Confidence 5567777766 44444322 223333211 6899999999999999999998753 355778888663
No 149
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=92.46 E-value=0.61 Score=38.26 Aligned_cols=60 Identities=18% Similarity=0.282 Sum_probs=46.0
Q ss_pred HHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEecccccCCCcc
Q 025493 44 VIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDIS 111 (252)
Q Consensus 44 ~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~~lePs~eiT 111 (252)
.+..+.++.-+..++|..+. +++.+.|.|+|..|.+.|||.+++..+. =|.|. .|.++||
T Consensus 35 ~LA~~~~~~~~s~~eIA~~~--~i~~~~l~kil~~L~~aGlv~s~rG~~G----Gy~La--r~p~eIt 94 (159)
T 3lwf_A 35 ELAKRIGDGPISLRSIAQDK--NLSEHYLEQLIGPLRNAGIVKSIRGAHG----GYVLN--GDPEKIT 94 (159)
T ss_dssp HHHHTTTSCCBCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEECSTTC----EEEEC--SCTTTCB
T ss_pred HHHhcCCCCCcCHHHHHHHH--CcCHHHHHHHHHHHHHCCeEEEecCCCC----ceEec--CCHHHCC
Confidence 34442345568999999999 9999999999999999999999865432 37774 4666655
No 150
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=92.41 E-value=0.17 Score=40.72 Aligned_cols=69 Identities=13% Similarity=0.204 Sum_probs=48.8
Q ss_pred CCChHHHHHHHHHHhhcCCCcccH-HHHHHHhhc-CCChHHHHHHHHHHHhcCCeeeeecc---ccCCeeeEEec
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIWT-RDMKRELKV-NLPDNIVTKSIKSLQNKSLIKEVVNI---HNKGKKHLMAV 102 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw~-~dik~~~~~-~l~~~~l~k~lK~Le~k~lIK~vksv---~~~~rK~YmL~ 102 (252)
.++..+.+|+.++.+ .-..|-.. +.|...++. ++...+|..+|+.||++|||.+.... ..+.||+|-|.
T Consensus 31 ~~~~~~~~IL~lL~~-~~~~Gyei~k~l~~~~~~~~is~gtLYp~L~rLe~~GlI~~~~~~~~~~g~~rk~Y~LT 104 (138)
T 2e1n_A 31 SKELAVCYVLAVLRH-EDSYGTELIQHLETHWPNYRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLA 104 (138)
T ss_dssp CHHHHHHHHHHHHTT-SCEEHHHHHHHHHHHSTTEECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEES
T ss_pred cchHHHHHHHHHHHh-CCCcHHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeecccCCCCCcEEEEEC
Confidence 455667778888876 44445443 345543321 69999999999999999999997654 35678888763
No 151
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=92.39 E-value=0.3 Score=37.97 Aligned_cols=64 Identities=9% Similarity=0.095 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhcCCCcccH-HHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeec--cccCCeeeEEec
Q 025493 38 ERLIYDVIRSNKQDMGIWT-RDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVN--IHNKGKKHLMAV 102 (252)
Q Consensus 38 e~~vy~~I~~~ag~~GIw~-~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vks--v~~~~rK~YmL~ 102 (252)
+..|+.++.+ .-..|--. +.|...++..+++.+|..+|+.||..|||.+... -..+.||+|-|.
T Consensus 16 ~~~IL~lL~~-~p~~gyel~~~l~~~~~~~i~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT 82 (117)
T 3elk_A 16 TLYILKELVK-RPMHGYELQKSMFETTGQALPQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHIT 82 (117)
T ss_dssp HHHHHHHHHH-SCEEHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEEC
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEEC
Confidence 4567777765 33333322 2233333113889999999999999999998764 245678888663
No 152
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=92.39 E-value=0.3 Score=37.75 Aligned_cols=48 Identities=15% Similarity=0.228 Sum_probs=38.7
Q ss_pred HHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeee
Q 025493 40 LIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVV 89 (252)
Q Consensus 40 ~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vk 89 (252)
.|+.++..+.++..+..++|..++ +++.+.+.|+|+.|++.|+|.+.+
T Consensus 13 ~iL~~la~~~~~~~~s~~ela~~~--~i~~~~v~~il~~L~~~Glv~~~~ 60 (129)
T 2y75_A 13 TIMIELAKKHGEGPTSLKSIAQTN--NLSEHYLEQLVSPLRNAGLVKSIR 60 (129)
T ss_dssp HHHHHHHHTTTSCCBCHHHHHHHT--TSCHHHHHHHHHHHHHTTSEEEC-
T ss_pred HHHHHHHhCCCCCcCCHHHHHHHH--CcCHHHHHHHHHHHHHCCceEecC
Confidence 344455551345678999999999 999999999999999999998764
No 153
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=92.25 E-value=0.52 Score=37.91 Aligned_cols=52 Identities=15% Similarity=0.237 Sum_probs=42.5
Q ss_pred CCChHHHHHHHHHHhhcCCCc-----------ccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeee
Q 025493 33 SLTDHERLIYDVIRSNKQDMG-----------IWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKE 87 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~G-----------Iw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~ 87 (252)
..+.++++..-+++- +...| +.+.+|..-+ |++...++|+|+.|+++|+|+.
T Consensus 137 ~~~~~~Rl~~~L~~l-~~~~~~~~~~~~~~~~~t~~~iA~~l--g~sr~tvsR~l~~L~~~g~I~~ 199 (210)
T 3ryp_A 137 FLDVTGRIAQTLLNL-AKQPDAMTHPDGMQIKITRQEIGQIV--GCSRETVGRILKMLEDQNLISA 199 (210)
T ss_dssp HSCHHHHHHHHHHHH-TTSTTCEEETTEEEEECCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEE
T ss_pred hCCHHHHHHHHHHHH-HHhcCcCCCCCceEeccCHHHHHHHh--CCcHHHHHHHHHHHHHCCcEEe
Confidence 356788877766665 54432 5689999999 9999999999999999999986
No 154
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=92.20 E-value=0.52 Score=38.46 Aligned_cols=60 Identities=15% Similarity=0.279 Sum_probs=46.8
Q ss_pred CCChHHHHHHHHHHhhcCCCc-----------ccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEe
Q 025493 33 SLTDHERLIYDVIRSNKQDMG-----------IWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMA 101 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~G-----------Iw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL 101 (252)
..+.++++..-+++- +...| +.+.+|..-+ |++...|+|+|+.|+++|+|+.- ++++.++
T Consensus 157 ~~~~~~Rl~~~L~~l-~~~~~~~~~~~~~~~~lt~~~lA~~l--g~sr~tvsR~l~~L~~~g~I~~~------~~~i~i~ 227 (230)
T 3iwz_A 157 FLDVTDRIVRTLHDL-SKEPEAMSHPQGTQLRVSRQELARLV--GCSREMAGRVLKKLQADGLLHAR------GKTVVLY 227 (230)
T ss_dssp HCCHHHHHHHHHHHH-TTSTTCEEETTEEEEECCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEE------TTEEEEE
T ss_pred cCCHHHHHHHHHHHH-HHhhCCCCCCCceecCCCHHHHHHHh--CCcHHHHHHHHHHHHHCCCEEEC------CCEEEEe
Confidence 457788877766665 54433 5789999999 99999999999999999999862 4555554
No 155
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=92.09 E-value=0.38 Score=35.20 Aligned_cols=44 Identities=11% Similarity=0.267 Sum_probs=39.5
Q ss_pred HHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeee
Q 025493 40 LIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEV 88 (252)
Q Consensus 40 ~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~v 88 (252)
.|.++|.+ . .-+...+|..++ ++...+|.+-|..||++|+|+++
T Consensus 6 ~Il~~L~~-~--g~vsv~eLa~~l--~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 6 QVRDLLAL-R--GRMEAAQISQTL--NTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHH-S--CSBCHHHHHHHT--TCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHH-c--CCCcHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEe
Confidence 56777777 4 458899999999 99999999999999999999998
No 156
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=92.08 E-value=0.38 Score=38.36 Aligned_cols=58 Identities=14% Similarity=0.149 Sum_probs=44.3
Q ss_pred HHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEecccccCCCcc
Q 025493 42 YDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDIS 111 (252)
Q Consensus 42 y~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~~lePs~eiT 111 (252)
.-.|.. ..+ + ..++|..+. ++|.+.|.|+|..|.+.|||.+++. +. =|.|. .|.++||
T Consensus 15 L~~La~-~~~-~-s~~~IA~~~--~i~~~~l~kIl~~L~~aGlv~s~rG-~G----Gy~La--r~p~~It 72 (145)
T 1xd7_A 15 LSLISM-DEK-T-SSEIIADSV--NTNPVVVRRMISLLKKADILTSRAG-VP----GASLK--KDPADIS 72 (145)
T ss_dssp HHHHHT-CSC-C-CHHHHHHHH--TSCHHHHHHHHHHHHHTTSEECCSS-SS----SCEES--SCGGGCB
T ss_pred HHHHHh-CCC-C-CHHHHHHHH--CcCHHHHHHHHHHHHHCCceEeecC-CC----Cceec--CCHHHCC
Confidence 334444 333 4 999999999 9999999999999999999999875 32 36663 4566665
No 157
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=92.03 E-value=0.36 Score=36.21 Aligned_cols=45 Identities=7% Similarity=0.231 Sum_probs=40.5
Q ss_pred HHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeee
Q 025493 40 LIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVV 89 (252)
Q Consensus 40 ~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vk 89 (252)
.|.++|.+ . .-+..++|..++ ++...+|.+-|..||++|+|+++.
T Consensus 6 ~Il~~L~~-~--g~vsv~eLA~~l--~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 6 EVRDMLAL-Q--GRMEAKQLSARL--QTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHH-S--CSEEHHHHHHHT--TCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHH-c--CCCcHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEEe
Confidence 57778877 4 468999999999 999999999999999999999985
No 158
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=92.03 E-value=0.26 Score=39.97 Aligned_cols=46 Identities=7% Similarity=0.174 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeee
Q 025493 38 ERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVV 89 (252)
Q Consensus 38 e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vk 89 (252)
-..|+.++. +.++...+|...+ ++++..|++.|+.|+..|||...+
T Consensus 60 R~~IL~~L~----~~~~t~~eLa~~l--gls~stvs~hL~~L~~aGlV~~~~ 105 (151)
T 3f6v_A 60 RRRLVQLLT----SGEQTVNNLAAHF--PASRSAISQHLRVLTEAGLVTPRK 105 (151)
T ss_dssp HHHHHHHGG----GCCEEHHHHHTTS--SSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHH----hCCCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEEe
Confidence 344555553 3568999999999 999999999999999999999865
No 159
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=91.98 E-value=0.84 Score=35.48 Aligned_cols=40 Identities=20% Similarity=0.337 Sum_probs=34.1
Q ss_pred cHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEe
Q 025493 55 WTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMA 101 (252)
Q Consensus 55 w~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL 101 (252)
..++|..+. ++..+.|.++|+.|+..|+|... +++-.|+.
T Consensus 39 s~~~La~~~--~vSr~tvr~Al~~L~~~G~i~~~-----~g~G~~V~ 78 (125)
T 3neu_A 39 SVREMGVKL--AVNPNTVSRAYQELERAGYIYAK-----RGMGSFVT 78 (125)
T ss_dssp CHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEE-----TTTEEEEC
T ss_pred CHHHHHHHH--CcCHHHHHHHHHHHHHCCeEEEe-----cCCEEEEe
Confidence 489999999 99999999999999999999886 34555543
No 160
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=91.92 E-value=0.41 Score=38.51 Aligned_cols=61 Identities=10% Similarity=0.071 Sum_probs=47.7
Q ss_pred CCCChHHHHHHHHHHhhcCCCc-----------ccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEE
Q 025493 32 DSLTDHERLIYDVIRSNKQDMG-----------IWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLM 100 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~G-----------Iw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~Ym 100 (252)
...+.++++..-+++- +...| +.+.+|..-+ |++...|+|+|+.|+++|+|+.- ++++.+
T Consensus 108 ~~~~~~~Rl~~~L~~l-~~~~~~~~~~~~~~~~~t~~~lA~~l--g~sr~tvsR~l~~L~~~g~I~~~------~~~i~i 178 (195)
T 3b02_A 108 QTGELRARIARYLLFL-ADTPLSARDRQGIYVTVSHEEIADAT--ASIRESVSKVLADLRREGLIATA------YRRVYL 178 (195)
T ss_dssp TSSCHHHHHHHHHHHH-TTSTTEEEETTEEEEECCHHHHHHTT--TSCHHHHHHHHHHHHHHTSEEEE------TTEEEE
T ss_pred hcCCHHHHHHHHHHHH-HHHcCCCCCCCeeeccCCHHHHHHHh--CCCHHHHHHHHHHHHHCCCEEec------CCEEEE
Confidence 4567788887777665 54433 5789999999 99999999999999999999752 355555
Q ss_pred e
Q 025493 101 A 101 (252)
Q Consensus 101 L 101 (252)
+
T Consensus 179 ~ 179 (195)
T 3b02_A 179 L 179 (195)
T ss_dssp C
T ss_pred e
Confidence 4
No 161
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=91.77 E-value=0.28 Score=45.55 Aligned_cols=48 Identities=27% Similarity=0.371 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeee
Q 025493 37 HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVV 89 (252)
Q Consensus 37 ~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vk 89 (252)
.++.|+++|.+ .| .+.+.+|.+++ +|...+++++++.|++.|+|++..
T Consensus 40 n~~~il~~l~~-~~--~~sr~ela~~~--gls~~tv~~~v~~L~~~gli~~~~ 87 (429)
T 1z05_A 40 NAGRVYKLIDQ-KG--PISRIDLSKES--ELAPASITKITRELIDAHLIHETT 87 (429)
T ss_dssp HHHHHHHHHHH-HC--SBCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHH-cC--CcCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEecc
Confidence 46789999999 55 69999999999 999999999999999999999985
No 162
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=91.77 E-value=0.17 Score=39.97 Aligned_cols=37 Identities=14% Similarity=0.184 Sum_probs=31.4
Q ss_pred CCChHHHHHHHHHHHhcCCeeeeecc-ccCCeeeEEec
Q 025493 66 NLPDNIVTKSIKSLQNKSLIKEVVNI-HNKGKKHLMAV 102 (252)
Q Consensus 66 ~l~~~~l~k~lK~Le~k~lIK~vksv-~~~~rK~YmL~ 102 (252)
++.+.+|..+|+.||++|||.+.... ..+.||+|-|.
T Consensus 49 ~is~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~LT 86 (123)
T 3ri2_A 49 PIEANTLYPLMRRLESQGLLASEWDNGGSKPRKYYRTT 86 (123)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEEC
T ss_pred CCCcchHHHHHHHHHHCCCEEEEeccCCCCCceEEEEC
Confidence 89999999999999999999987643 34788888763
No 163
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=91.72 E-value=0.97 Score=37.21 Aligned_cols=63 Identities=5% Similarity=0.062 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHhhcCCCcccHHHHHHHhhcC-CChHHHHHHHHHHHhcCCeeeeecc-----ccCCeeeEEe
Q 025493 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVN-LPDNIVTKSIKSLQNKSLIKEVVNI-----HNKGKKHLMA 101 (252)
Q Consensus 36 ~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~-l~~~~l~k~lK~Le~k~lIK~vksv-----~~~~rK~YmL 101 (252)
+....|++.+.. ....-.-..+|.... . |.+..|.+.|+.|+..|||+.+..- ..+-+|.|.|
T Consensus 29 ~tR~~IL~~Ll~-~p~~~~ta~eL~~~l--~~lS~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~L 97 (151)
T 3u1d_A 29 ETRLDVLHQILA-QPDGVLSVEELLYRN--PDETEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAV 97 (151)
T ss_dssp HHHHHHHHHHHH-STTSCBCHHHHHHHC--TTSCHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEE
T ss_pred hHHHHHHHHHHc-CCCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEE
Confidence 355678888888 644447788998888 5 9999999999999999999987532 2334567766
No 164
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=91.58 E-value=0.56 Score=38.89 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=45.7
Q ss_pred CCCCCChHHHHHHHHHHhhcCCCc------ccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeee
Q 025493 30 PSDSLTDHERLIYDVIRSNKQDMG------IWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKE 87 (252)
Q Consensus 30 ~~~~l~~~e~~vy~~I~~~ag~~G------Iw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~ 87 (252)
.....+.++++..-+++- +...| +.+.+|..-+ |++...|+|+|+.|+++|+|+.
T Consensus 158 ~l~~~~~~~Rl~~~L~~l-~~~~~~~~~~~~t~~~lA~~l--G~sr~tvsR~l~~l~~~glI~~ 218 (232)
T 1zyb_A 158 DEPTLDLKSKIIRFFLSH-CEKPQGEKTFKVKMDDLARCL--DDTRLNISKTLNELQDNGLIEL 218 (232)
T ss_dssp SCCCCSHHHHHHHHHHTT-CSSSSSCEEEECCHHHHHHHH--TSCHHHHHHHHHHHHHTTSCEE
T ss_pred HHhhcCHHHHHHHHHHHH-HhhcCCeEEecCCHHHHHHHh--CCChhHHHHHHHHHHHCCCEEe
Confidence 355678888888766665 65544 7899999999 9999999999999999999975
No 165
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=91.58 E-value=0.69 Score=37.06 Aligned_cols=52 Identities=19% Similarity=0.249 Sum_probs=40.8
Q ss_pred CCChHHHHHHHHHHhhcCC-------C----cccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeee
Q 025493 33 SLTDHERLIYDVIRSNKQD-------M----GIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKE 87 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~-------~----GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~ 87 (252)
..+.++++..-+.+- +.. . -+.+++|..-+ |++...|+|+|+.|+++|+|+.
T Consensus 134 ~~~~~~Rl~~~L~~l-~~~~~~~~~~~~~~~~~t~~~lA~~l--g~sr~tvsR~l~~l~~~g~I~~ 196 (207)
T 2oz6_A 134 FLDVTGRVARTLLDL-CQQPDAMTHPDGMQIKITRQEIGRIV--GCSREMVGRVLKSLEEQGLVHV 196 (207)
T ss_dssp HCCHHHHHHHHHHHH-TTSTTCEEETTEEEEECCHHHHHHHH--TSCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCHHHHHHHHHHHH-HHhcCCCCCCCceecccCHHHHHHHh--CCCHHHHHHHHHHHHHCCCEEe
Confidence 456778776555543 332 2 26789999999 9999999999999999999976
No 166
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=91.48 E-value=0.73 Score=34.12 Aligned_cols=47 Identities=15% Similarity=0.261 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeee
Q 025493 37 HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVV 89 (252)
Q Consensus 37 ~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vk 89 (252)
....|+..+.. .| +....+|...+ ++++..+++.|+.|++. +|..-+
T Consensus 28 ~Rl~IL~~l~~-~~--~~~~~ela~~l--~is~stvs~hL~~L~~~-lv~~~~ 74 (99)
T 2zkz_A 28 MRLKIVNELYK-HK--ALNVTQIIQIL--KLPQSTVSQHLCKMRGK-VLKRNR 74 (99)
T ss_dssp HHHHHHHHHHH-HS--CEEHHHHHHHH--TCCHHHHHHHHHHHBTT-TBEEEE
T ss_pred HHHHHHHHHHH-CC--CcCHHHHHHHH--CcCHHHHHHHHHHHHHH-hhhheE
Confidence 34456655555 33 58899999999 99999999999999999 998765
No 167
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=91.47 E-value=2.5 Score=32.92 Aligned_cols=40 Identities=28% Similarity=0.458 Sum_probs=34.6
Q ss_pred cHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEe
Q 025493 55 WTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMA 101 (252)
Q Consensus 55 w~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL 101 (252)
..++|..+. ++..+.|.++|+.|+..|||... +++-.|+.
T Consensus 40 ser~La~~~--gVSr~tVReAl~~L~~eGlv~~~-----~g~G~~V~ 79 (134)
T 4ham_A 40 SIREFASRI--GVNPNTVSKAYQELERQEVIITV-----KGKGTFIA 79 (134)
T ss_dssp CHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEE-----TTTEEEEC
T ss_pred cHHHHHHHH--CCCHHHHHHHHHHHHHCCcEEEE-----cCcEEEEe
Confidence 678999999 99999999999999999999886 45556653
No 168
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=91.42 E-value=0.3 Score=39.89 Aligned_cols=63 Identities=13% Similarity=0.279 Sum_probs=43.5
Q ss_pred HHHHHHHhhcCCCcccH-HHHHHHhhc-CCChHHHHHHHHHHHhcCCeeeeecc---ccCCeeeEEecc
Q 025493 40 LIYDVIRSNKQDMGIWT-RDMKRELKV-NLPDNIVTKSIKSLQNKSLIKEVVNI---HNKGKKHLMAVE 103 (252)
Q Consensus 40 ~vy~~I~~~ag~~GIw~-~dik~~~~~-~l~~~~l~k~lK~Le~k~lIK~vksv---~~~~rK~YmL~~ 103 (252)
+|+.++.+ .-..|--. +.|...++. ++...+|..+|+.||++|||.+.... ..+.||+|-|.+
T Consensus 48 ~IL~lL~~-~p~~GYeI~k~l~~~~~~~~is~gtLYp~L~rLE~~GlI~~~~~~~~~~g~~rk~Y~LT~ 115 (148)
T 2zfw_A 48 YVLAVLRH-EDSYGTELIQHLETHWPNYRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQ 115 (148)
T ss_dssp HHHHHHTT-CCEEHHHHHHHHHHHCTTEECCSHHHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEEESS
T ss_pred HHHHHHHh-CCCcHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHCCCEEEEeeccCCCCCCcEEEEECH
Confidence 47777765 44444433 344443311 59999999999999999999987643 256789987743
No 169
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=91.10 E-value=0.91 Score=35.67 Aligned_cols=54 Identities=7% Similarity=0.139 Sum_probs=46.8
Q ss_pred HHHHHHHHhhhC--CCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 129 VKSQCLKQIIKL--KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 129 l~~~~~~~i~~~--~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
-|..|+.+|... ..+|++||.+.+++.+ -.++..-|-+.|+.|+-.|.|.++..
T Consensus 19 qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~---~~is~aTVYR~L~~L~e~Glv~~~~~ 74 (136)
T 1mzb_A 19 PRVKILQMLDSAEQRHMSAEDVYKALMEAG---EDVGLATVYRVLTQFEAAGLVVRHNF 74 (136)
T ss_dssp HHHHHHHHHHCC-CCSBCHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHHTSEEEECS
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHhhC---CCCCHHHHHHHHHHHHHCCcEEEEEe
Confidence 467888888754 5899999999999876 35789999999999999999999874
No 170
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=91.06 E-value=0.75 Score=39.01 Aligned_cols=60 Identities=17% Similarity=0.245 Sum_probs=45.8
Q ss_pred CCChHHHHHHHHHHhhcCCC-----------cccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEe
Q 025493 33 SLTDHERLIYDVIRSNKQDM-----------GIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMA 101 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~-----------GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL 101 (252)
..+.++++..-+++- +... -+.+.+|..-+ |+....|+|+|+.|+++|+|+. .++++.++
T Consensus 187 ~~~~~~Rla~~Ll~l-~~~~~~~~~~~~~~l~lt~~~lA~~l--G~sr~tvsR~l~~L~~~GlI~~------~~~~i~I~ 257 (260)
T 3kcc_A 187 FLLVTGRIAQTLLNL-AKQPDAMTHPDGMQIKITRQEIGQIV--GCSRETVGRILKMLEDQNLISA------HGKTIVVY 257 (260)
T ss_dssp HCCHHHHHHHHHHHH-HTSTTCEEETTEEEEECCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEE------CSSEEEEC
T ss_pred cCCHHHHHHHHHHHH-HHhcCCCCCCCceeecCCHHHHHHHh--CCCHHHHHHHHHHHHHCCCEEE------cCCEEEEE
Confidence 356788877666654 4332 24689999999 9999999999999999999985 24566654
No 171
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=91.02 E-value=0.32 Score=39.85 Aligned_cols=68 Identities=10% Similarity=0.169 Sum_probs=51.9
Q ss_pred CCCCChHHHHHHHHHHhhcCC--CcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEec
Q 025493 31 SDSLTDHERLIYDVIRSNKQD--MGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAV 102 (252)
Q Consensus 31 ~~~l~~~e~~vy~~I~~~ag~--~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~ 102 (252)
.+++---+.-.|+-|...--+ +=|....|-.++ ++.-+.-.++|+.||++|+||.| +++....||.-.
T Consensus 39 ~nn~VlfDk~tydKL~KEVpk~gKlITpsvlseRl--kI~gSLARkaLreL~~kGlIk~V--~kh~~q~IYTra 108 (143)
T 2xzm_8 39 VNHAVFIEKKNVESIINNPSKVGKVLTVSTVVEKL--KVNGSLARQLMRTMADRKLVEKV--AKNGNQWVYSVI 108 (143)
T ss_dssp CCCBSCCCHHHHHHHHTCCTTSCSEECHHHHHHHH--CBCHHHHHHHHHHHHHTTSEEEE--EEETTEEEEEET
T ss_pred HhcceeecHHHHHHHHHHhcccceeecHHHHHHHh--cchHHHHHHHHHHHHHCCCEEEE--ecCCCeEEEecC
Confidence 344433445667666532444 579999999999 99999999999999999999999 455578888654
No 172
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=90.87 E-value=0.62 Score=37.25 Aligned_cols=61 Identities=8% Similarity=0.037 Sum_probs=44.7
Q ss_pred HHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEecccccCCCccCC
Q 025493 43 DVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGG 113 (252)
Q Consensus 43 ~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~~lePs~eiTGG 113 (252)
-.+.. .++.-+..++|..+. +++.+.|.|+|..|.+.|||.+++. + --|.|. .|.++||=|
T Consensus 21 ~~La~-~~~~~~~~~~iA~~~--~i~~~~l~kil~~L~~~Glv~s~rG-~----GGy~L~--~~p~~Itl~ 81 (149)
T 1ylf_A 21 SILKN-NPSSLCTSDYMAESV--NTNPVVIRKIMSYLKQAGFVYVNRG-P----GGAGLL--KDLHEITLL 81 (149)
T ss_dssp HHHHH-SCGGGCCHHHHHHHH--TSCHHHHHHHHHHHHHTTSEEEC--------CCEEES--SCGGGCBHH
T ss_pred HHHHh-CCCCCcCHHHHHHHH--CcCHHHHHHHHHHHHHCCcEEEccC-C----CceEeC--CChhhCcHH
Confidence 33444 344568899999999 9999999999999999999998765 2 247663 555666633
No 173
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=90.71 E-value=0.44 Score=39.07 Aligned_cols=52 Identities=12% Similarity=0.136 Sum_probs=42.3
Q ss_pred CCChHHHHHHHHHHhhcCCCc------------ccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeee
Q 025493 33 SLTDHERLIYDVIRSNKQDMG------------IWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKE 87 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~G------------Iw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~ 87 (252)
..+.++++..-+.+- +...| +.+.+|..-+ |++...|+|+|+.|++.|+|+.
T Consensus 132 ~~~~~~Rl~~~L~~l-~~~~~~~~~~~~~~~~~~t~~~lA~~l--G~sr~tvsR~l~~L~~~g~I~~ 195 (222)
T 1ft9_A 132 FHDIKQRIAGFFIDH-ANTTGRQTQGGVIVSVDFTVEEIANLI--GSSRQTTSTALNSLIKEGYISR 195 (222)
T ss_dssp THHHHHHHHHHHHHT-CBCCCSCC--CCCCEECCCHHHHHHHH--CSCHHHHHHHHHHHHHTTSSEE
T ss_pred cCCHHHHHHHHHHHH-HHHhCCCCCCcEEEeccCCHHHHHHHh--CCcHHHHHHHHHHHHHCCcEEE
Confidence 345677777666665 64433 6899999999 9999999999999999999976
No 174
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=90.66 E-value=0.65 Score=38.15 Aligned_cols=62 Identities=13% Similarity=0.260 Sum_probs=39.3
Q ss_pred HHHHHHHHHhhcCCCcccHHHHHHHhh----c--CCChHHHHHHHHHHHhcCCeeeeeccc--cCCeeeEEecc
Q 025493 38 ERLIYDVIRSNKQDMGIWTRDMKRELK----V--NLPDNIVTKSIKSLQNKSLIKEVVNIH--NKGKKHLMAVE 103 (252)
Q Consensus 38 e~~vy~~I~~~ag~~GIw~~dik~~~~----~--~l~~~~l~k~lK~Le~k~lIK~vksv~--~~~rK~YmL~~ 103 (252)
+..|+.++.+ . ...--+|++... . ++...+|.++|+.||++|||.+..... .+.||+|-|.+
T Consensus 4 ~~~iL~lL~~-~---~~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~ 73 (179)
T 1yg2_A 4 PHVILTVLST-R---DATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQ 73 (179)
T ss_dssp HHHHHHHHHH-C---CBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECCC---------CEEECH
T ss_pred HHHHHHHHhc-C---CCCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeCh
Confidence 3456666655 3 244455555541 1 588999999999999999999865542 36799998765
No 175
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=90.65 E-value=0.3 Score=40.46 Aligned_cols=55 Identities=24% Similarity=0.456 Sum_probs=48.2
Q ss_pred CCCChHHHHHHHHHHhhcCCCcc--cHHHHHHHhhcCCC-hHHHHHHHHHHHhcCCeeee
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGI--WTRDMKRELKVNLP-DNIVTKSIKSLQNKSLIKEV 88 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GI--w~~dik~~~~~~l~-~~~l~k~lK~Le~k~lIK~v 88 (252)
..||+.|..+++.|++.-...|+ .+++|.+++ |+. ++.+++.++.|+++++|..-
T Consensus 2 ~~lt~~q~~i~~~i~~~~~~~g~~ps~~elA~~l--giss~~tv~~~~~~l~~~~~l~~~ 59 (202)
T 1jhf_A 2 KALTARQQEVFDLIRDHISQTGMPPTRAEIAQRL--GFRSPNAAEEHLKALARKGVIEIV 59 (202)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHT--TCSSHHHHHHHHHHHHHTTSEEEC
T ss_pred CccCHHHHHHHHHHHHHHHHhCCCccHHHHHHHh--CCCChHHHHHHHHHHHHCCCceeC
Confidence 36999999999999884466788 999999999 999 89999999999999988753
No 176
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=90.37 E-value=0.5 Score=37.82 Aligned_cols=55 Identities=9% Similarity=0.125 Sum_probs=47.3
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeC
Q 025493 129 VKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSN 186 (252)
Q Consensus 129 l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~ 186 (252)
-|..|+.+|...+.+|++||++.+++.+ -.++..-|.+.|+.|+-.|.|.++...
T Consensus 20 qR~~Il~~l~~~~h~ta~ei~~~l~~~~---~~is~~TVYR~L~~L~e~Glv~~i~~~ 74 (145)
T 3eyy_A 20 QRQLVLEAVDTLEHATPDDILGEVRKTA---SGINISTVYRTLELLEELGLVSHAHLG 74 (145)
T ss_dssp HHHHHHHHHHHHSSBCHHHHHHHHHTTC---TTCCHHHHHHHHHHHHHHTSEEEEECG
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHhhC---CCCCHhHHHHHHHHHHHCCcEEEEEeC
Confidence 4677888887666999999999999876 357899999999999999999998753
No 177
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=89.96 E-value=0.91 Score=35.44 Aligned_cols=56 Identities=7% Similarity=0.207 Sum_probs=47.7
Q ss_pred HHHHHHHHHhhhC-CCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeC
Q 025493 128 VVKSQCLKQIIKL-KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSN 186 (252)
Q Consensus 128 ~l~~~~~~~i~~~-~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~ 186 (252)
.-|..|+.+|... +.+|++||++.+++.+ -.++..-|-+.|+.|+-.|.|.++...
T Consensus 11 ~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~---~~is~~TVYR~L~~L~e~Glv~~~~~~ 67 (131)
T 2o03_A 11 RQRAAISTLLETLDDFRSAQELHDELRRRG---ENIGLTTVYRTLQSMASSGLVDTLHTD 67 (131)
T ss_dssp HHHHHHHHHHHHCCSCEEHHHHHHHHHHTT---CCCCHHHHHHHHHHHHTTTSEEEEECT
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhC---CCCCHhhHHHHHHHHHHCCCEEEEEeC
Confidence 4577888888754 5899999999999876 367899999999999999999998754
No 178
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=89.82 E-value=0.9 Score=36.00 Aligned_cols=56 Identities=5% Similarity=0.130 Sum_probs=48.0
Q ss_pred HHHHHHHHHhhh-CCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeC
Q 025493 128 VVKSQCLKQIIK-LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSN 186 (252)
Q Consensus 128 ~l~~~~~~~i~~-~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~ 186 (252)
.-|..|+++|.. .+.+|++||++.+++.+ -.++..-|.+.|+.|+-.|.|.++...
T Consensus 14 ~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~---~~is~aTVYR~L~~L~e~Glv~~~~~~ 70 (139)
T 3mwm_A 14 RQRAAVSAALQEVEEFRSAQELHDMLKHKG---DAVGLTTVYRTLQSLADAGEVDVLRTA 70 (139)
T ss_dssp HHHHHHHHHHTTCSSCEEHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHTTSSEEEECT
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhC---CCCCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 457788998876 46899999999999876 358899999999999999999998753
No 179
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=89.79 E-value=1.3 Score=34.75 Aligned_cols=66 Identities=12% Similarity=0.092 Sum_probs=51.8
Q ss_pred CCChHHHHHHHHHHhhcCCCcccHHHHHHHhh---cCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEe
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELK---VNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMA 101 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~---~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL 101 (252)
.+|+.-..|++++.+ ++..-+...+|-.+++ +++...+|-|.|+.|++.|+|.++..-. +...|-+
T Consensus 15 r~T~qR~~Il~~L~~-~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~--~~~~Y~~ 83 (136)
T 1mzb_A 15 KVTLPRVKILQMLDS-AEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHNFDG--GHAVFEL 83 (136)
T ss_dssp CCCHHHHHHHHHHHC-C-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEECSSS--SSCEEEE
T ss_pred CCCHHHHHHHHHHHh-CCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEEeCC--CceEEEe
Confidence 578899999999998 7645688888877652 3799999999999999999999986543 3445644
No 180
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=89.79 E-value=1.1 Score=37.34 Aligned_cols=113 Identities=11% Similarity=0.060 Sum_probs=84.7
Q ss_pred HHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEecccccCCCccCCccccCC
Q 025493 40 LIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEG 119 (252)
Q Consensus 40 ~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~~lePs~eiTGG~wy~d~ 119 (252)
.|+.++. .-...+..|-+++ ||.-.++.=+|+.||..|+|++|+. .++.+++|.+- .|-.
T Consensus 15 ~ILE~Lk----~G~~~t~~Iak~L--GlShg~aq~~Ly~LeREG~V~~Vk~---GK~ayw~L~~s---------~y~~-- 74 (165)
T 2vxz_A 15 DILALLA----DGCKTTSLIQQRL--GLSHGRAKALIYVLEKEGRVTRVAF---GNVALVCLSMD---------QYRQ-- 74 (165)
T ss_dssp HHHHHHT----TCCEEHHHHHHHH--TCCHHHHHHHHHHHHHTTSCEEEEE---TTEEEEESCHH---------HHHH--
T ss_pred HHHHHHH----hCCccHHHHHHHh--CCcHHHHHHHHHHHHhcCceEEEEE---ccEEEEEecHH---------HHHH--
Confidence 4455544 3457888999999 9999999999999999999999864 35677777211 2211
Q ss_pred cCCHHHHHHHHHHHHHHhhhC--CCCCHHHHHHHHHHc--------CCcceecCHHHHHHHHHHHhhc
Q 025493 120 SLDTEFIKVVKSQCLKQIIKL--KVATLEGISDSIKRS--------GAFKVDLTKQQIEEIVRAVVLD 177 (252)
Q Consensus 120 e~D~efV~~l~~~~~~~i~~~--~~~T~~~I~~~i~~~--------~i~~~~Ls~~di~~IL~tLVyD 177 (252)
.|+.+.+-+..+|... .++|+.++++.|.+- .+..+.-+...+-..|+-+.-|
T Consensus 75 -----kV~dilrel~~~l~s~gvk~i~p~~l~~li~~d~~~~~~~a~~v~v~~~~~~~l~fl~~~l~~ 137 (165)
T 2vxz_A 75 -----LVDGMIREVERLVTTNKLKFISPPRLHDLIIKDPQARKFFSSIIPIAHRTAIILSFLNHLLKM 137 (165)
T ss_dssp -----HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSHHHHHHHHTTSCCSSCCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHcCCeeeCcHHHHHHHHhCHHHHHHHHHhcCcccchhHHHHHHHHHHHH
Confidence 6777777777888754 589999999999864 3556777888888888776554
No 181
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=89.78 E-value=0.33 Score=38.08 Aligned_cols=58 Identities=12% Similarity=0.194 Sum_probs=46.6
Q ss_pred HHHHHHH-HhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEE
Q 025493 39 RLIYDVI-RSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLM 100 (252)
Q Consensus 39 ~~vy~~I-~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~Ym 100 (252)
...|+-| .+.-.-+=|....|-.++ ++.-+.-.++|+.|+++|+|+.|- ++....+|-
T Consensus 44 k~t~dkl~KEVpk~KlITpsvlseRl--kI~gSLAR~aLreL~~kGlIk~V~--kh~~q~IYT 102 (108)
T 3u5c_Z 44 QEKYDRILKEVPTYRYVSVSVLVDRL--KIGGSLARIALRHLEKEGIIKPIS--KHSKQAIYT 102 (108)
T ss_dssp THHHHHHHHHCSSCSSBSHHHHHHTT--CCCTTHHHHHHHHHSSSSSCEEEE--CCSSCCEEE
T ss_pred HHHHHHHHHHccCCeEEeHHHhhhhh--hhhHHHHHHHHHHHHHCCCEEEEe--cCCCEEEEe
Confidence 4455544 343556778889999999 999999999999999999999993 666778884
No 182
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=89.33 E-value=0.56 Score=40.31 Aligned_cols=45 Identities=20% Similarity=0.360 Sum_probs=38.3
Q ss_pred HHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeee
Q 025493 40 LIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEV 88 (252)
Q Consensus 40 ~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~v 88 (252)
.|+.++.+ .+ .++...+|-.++ +|+.+.+.|.|++|+..|+|...
T Consensus 10 ~iL~~l~~-~~-~~~s~~ela~~~--gl~~stv~r~l~~L~~~G~v~~~ 54 (241)
T 2xrn_A 10 SIMRALGS-HP-HGLSLAAIAQLV--GLPRSTVQRIINALEEEFLVEAL 54 (241)
T ss_dssp HHHHHHHT-CT-TCEEHHHHHHHT--TSCHHHHHHHHHHHHTTTSEEEC
T ss_pred HHHHHHHh-CC-CCCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEe
Confidence 35556655 43 479999999999 99999999999999999999874
No 183
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=89.21 E-value=0.83 Score=37.37 Aligned_cols=61 Identities=11% Similarity=0.195 Sum_probs=44.8
Q ss_pred HHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEecccccCCCcc
Q 025493 42 YDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDIS 111 (252)
Q Consensus 42 y~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~~lePs~eiT 111 (252)
+-++.. ..+.-+..++|..+. +++.+.|.|+|+.|.+.|+|.+++..+- =|.|. .|.++||
T Consensus 18 l~~La~-~~~~~~s~~~IA~~~--~is~~~l~kil~~L~~aGlv~s~rG~~G----Gy~La--r~p~~It 78 (162)
T 3k69_A 18 ILYLDA-HRDSKVASRELAQSL--HLNPVMIRNILSVLHKHGYLTGTVGKNG----GYQLD--LALADMN 78 (162)
T ss_dssp HHHHHT-TTTSCBCHHHHHHHH--TSCGGGTHHHHHHHHHTTSSEEECSTTC----EEECC--SCGGGSB
T ss_pred HHHHHh-CCCCCcCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEeecCCCC----CeEec--CChhhCc
Confidence 334444 444558999999999 9999999999999999999988755432 26664 3444443
No 184
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=88.91 E-value=0.7 Score=39.75 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=38.8
Q ss_pred HHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeee
Q 025493 40 LIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEV 88 (252)
Q Consensus 40 ~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~v 88 (252)
.|+.++.+ .+ .++...+|-.++ +|+.+.+.|.|++|+..|+|...
T Consensus 12 ~iL~~l~~-~~-~~~~~~ela~~~--gl~~stv~r~l~~L~~~G~v~~~ 56 (249)
T 1mkm_A 12 EILDFIVK-NP-GDVSVSEIAEKF--NMSVSNAYKYMVVLEEKGFVLRK 56 (249)
T ss_dssp HHHHHHHH-CS-SCBCHHHHHHHT--TCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHh-CC-CCCCHHHHHHHH--CcCHHHHHHHHHHHHHCCcEEEC
Confidence 46666766 43 479999999999 99999999999999999999874
No 185
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=88.80 E-value=6.5 Score=30.02 Aligned_cols=112 Identities=8% Similarity=0.067 Sum_probs=83.1
Q ss_pred HHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEecccccCCCccCCcccc
Q 025493 38 ERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYS 117 (252)
Q Consensus 38 e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~~lePs~eiTGG~wy~ 117 (252)
+..|-.++.. +|.. +-..+|...+ +++..++...|..|...+-|..+.. .+...|
T Consensus 4 ~~~l~~~L~~-~~~~-~~~~~l~~~~--~l~~~~l~~~l~~l~~~~~~~~~~~---~~~~~~------------------ 58 (135)
T 2v9v_A 4 EKILAQIIQE-HREG-LDWQEAATRA--SLSLEETRKLLQSMAAAGQVTLLRV---ENDLYA------------------ 58 (135)
T ss_dssp HHHHHHHHHH-CSSC-EEHHHHHHHH--TCCHHHHHHHHHHHHHTTCEEEEEE---TTEEEE------------------
T ss_pred HHHHHHHHHH-cCcC-CCHHHHHHHh--CCCHHHHHHHHHHHHhCCcEEEEec---CCCeEE------------------
Confidence 3467777888 7766 4449999999 9999999999999988777666532 111112
Q ss_pred CCcCCHHHHHHHHHHHHHHhhh-------CCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEE
Q 025493 118 EGSLDTEFIKVVKSQCLKQIIK-------LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEV 183 (252)
Q Consensus 118 d~e~D~efV~~l~~~~~~~i~~-------~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v 183 (252)
+..+..+.+++.+...|.. +..+.-+++.+.+- -.++..-+..+|+.|+-+|.|...
T Consensus 59 ---~~~~~~~~l~~~l~~~L~~yH~~~P~~~G~~keeLr~~~~------~~~~~~~~~~ll~~l~~~g~l~~~ 122 (135)
T 2v9v_A 59 ---ISTERYQAWWQAVTRALEEFHSRYPLRPGLAREELRSRYF------SRLPARVYQALLEEWSREGRLQLA 122 (135)
T ss_dssp ---EEHHHHHHHHHHHHHHHHHHHHHCTTSSCEEHHHHHHHHC------TTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred ---ecHHHHHHHHHHHHHHHHHHHHhCCCccCCCHHHHHHHhc------ccCCHHHHHHHHHHHHHCCCEEec
Confidence 4566788888888888873 35677788776652 124688899999999999999753
No 186
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=88.71 E-value=7 Score=30.24 Aligned_cols=109 Identities=17% Similarity=0.204 Sum_probs=70.3
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEecccccCCCcc
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDIS 111 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~~lePs~eiT 111 (252)
+.++.+++. .++.. . ..|...++|.+.+ +++.++|.+.++..+..|.... .| .
T Consensus 31 ~~~s~e~r~--~iv~~-~-~~G~s~~~iA~~l--gis~~TV~rw~~~~~~~G~~~~-----------------~~----r 83 (149)
T 1k78_A 31 RPLPDVVRQ--RIVEL-A-HQGVRPCDISRQL--RVSHGCVSKILGRYYETGSIKP-----------------GV----I 83 (149)
T ss_dssp SCCCHHHHH--HHHHH-H-HTTCCHHHHHHHH--TCCHHHHHHHHHHHHHHSCCCC-----------------CC----C
T ss_pred CCCCHHHHH--HHHHH-H-HcCCCHHHHHHHH--CcCHHHHHHHHHHHHHcCCCCc-----------------cC----C
Confidence 357777653 34444 3 2478899999999 9999999999999987775321 01 0
Q ss_pred CCccccCCcCCHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCc--ceecCHHHHHHHHHH
Q 025493 112 GGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAF--KVDLTKQQIEEIVRA 173 (252)
Q Consensus 112 GG~wy~d~e~D~efV~~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~--~~~Ls~~di~~IL~t 173 (252)
+|. ....++.++.+.|. .++......|+.+|+..+...++. .+.+|..-|..+|..
T Consensus 84 ~gr--~~~~~~~~~~~~I~----~~~~~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~ 141 (149)
T 1k78_A 84 GGS--KPKVATPKVVEKIA----EYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRT 141 (149)
T ss_dssp CCC--CCSSSCHHHHHHHH----HHHHHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHC
T ss_pred CCC--CCCCCCHHHHHHHH----HHHHhCcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHH
Confidence 110 01235555555444 444555678999999999776421 245777878777753
No 187
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=88.64 E-value=0.23 Score=38.94 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=40.7
Q ss_pred CCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEe
Q 025493 50 QDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMA 101 (252)
Q Consensus 50 g~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL 101 (252)
.-+=|....|-.++ ++.-+.-.++|+.|+++|+|+.| +++....+|--
T Consensus 57 k~KlITpsvlseRl--kI~gSLAR~aLreL~~kGlIk~V--~kh~~q~IYTr 104 (108)
T 3iz6_V 57 KYKQITPSVLSERL--RINGSLARQAIKDLESRGAIRVV--SVHSSQLIYTR 104 (108)
T ss_dssp HHSSEEEHHHHHHH--HTCCHHHHHHHHHHHHHHTSCEE--CCCTTSCCEEE
T ss_pred CCeEEeHHHHHhhh--cccHHHHHHHHHHHHHCCCEEEE--ecCCCEEEEec
Confidence 34677788888999 99999999999999999999999 46667788853
No 188
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=88.63 E-value=1.9 Score=30.55 Aligned_cols=47 Identities=11% Similarity=0.099 Sum_probs=40.4
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEe
Q 025493 130 KSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVK 184 (252)
Q Consensus 130 ~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~ 184 (252)
+..++.+|...+.+|..||++.+ .+|..-|.+.|+.|+-.|.|++..
T Consensus 2 r~~Il~~L~~~~~~s~~eLa~~l--------gvs~~tv~r~L~~L~~~GlI~~~~ 48 (81)
T 2htj_A 2 KNEILEFLNRHNGGKTAEIAEAL--------AVTDYQARYYLLLLEKAGMVQRSP 48 (81)
T ss_dssp HHHHHHHHHHSCCCCHHHHHHHH--------TSCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEec
Confidence 56788889888889999999876 367889999999999999998754
No 189
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=88.42 E-value=1.1 Score=40.78 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=48.5
Q ss_pred CChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCC-eeeeeccccCCeeeEEec
Q 025493 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSL-IKEVVNIHNKGKKHLMAV 102 (252)
Q Consensus 34 l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~l-IK~vksv~~~~rK~YmL~ 102 (252)
|++-.+.|++++.+ +.+.-+.-.+|..++ ++..+.|.|.|+.|++.|+ |.++ ..|-|.|.
T Consensus 1 M~~~~~~iL~~L~~-~~g~~~Sg~eLa~~l--gvSr~aV~k~i~~L~~~G~~i~~~------~~~GY~L~ 61 (323)
T 3rkx_A 1 MSKYSQDVLQLLYK-NKPNYISGQSIAESL--NISRTAVKKVIDQLKLEGCKIDSV------NHKGHLLQ 61 (323)
T ss_dssp --CHHHHHHHHHHH-HTTSCBCHHHHHHHH--TSCHHHHHHHHHHHHHTTCEEEEE------TTTEEEEE
T ss_pred CchHHHHHHHHHHh-CCCCccCHHHHHHHH--CCCHHHHHHHHHHHHhcCCeEEEe------CCCeEEEe
Confidence 45566789999988 877889999999999 9999999999999999999 4444 23467664
No 190
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=88.41 E-value=1.3 Score=36.28 Aligned_cols=52 Identities=6% Similarity=0.080 Sum_probs=41.6
Q ss_pred CCChHHHHHHHHHH---hhcC--------CCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeee
Q 025493 33 SLTDHERLIYDVIR---SNKQ--------DMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKE 87 (252)
Q Consensus 33 ~l~~~e~~vy~~I~---~~ag--------~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~ 87 (252)
..+.++++..-+++ . .| .--+.+++|..-+ |++...|+|+|+.|+++|+|+.
T Consensus 150 ~~~~~~Rl~~~L~~l~~~-~~~~~~~~~~~~~~t~~~lA~~l--g~sr~tvsR~l~~l~~~g~I~~ 212 (232)
T 2gau_A 150 QKHVRGRLAETLLILKEN-FGFENDGATLSIYLSREELATLS--NMTVSNAIRTLSTFVSERMLAL 212 (232)
T ss_dssp HSCHHHHHHHHHHHHHHH-HCBCTTSSBBSCCCCHHHHHHHT--TSCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCHHHHHHHHHHHHHHH-cCCCCCCcEEEcccCHHHHHHHh--CCCHHHHHHHHHHHHHCCCEee
Confidence 35677877665554 4 33 1346889999999 9999999999999999999976
No 191
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=88.34 E-value=1.4 Score=35.34 Aligned_cols=57 Identities=12% Similarity=0.165 Sum_probs=47.7
Q ss_pred HHHHHHHHHhhh-CCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeCC
Q 025493 128 VVKSQCLKQIIK-LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNG 187 (252)
Q Consensus 128 ~l~~~~~~~i~~-~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~g 187 (252)
.-|..|+.+|.. ...+|++||++.+++.+ -.++..-|-+.|+.|+-.|.|.++...+
T Consensus 27 ~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~---~~is~aTVYR~L~~L~e~Glv~~~~~~~ 84 (150)
T 2xig_A 27 KQREEVVSVLYRSGTHLSPEEITHSIRQKD---KNTSISSVYRILNFLEKENFISVLETSK 84 (150)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHHHHS---TTCCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhC---CCCCHhhHHHHHHHHHHCCcEEEEEeCC
Confidence 346678888875 46899999999999876 2578999999999999999999987543
No 192
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=88.20 E-value=0.093 Score=46.61 Aligned_cols=54 Identities=20% Similarity=0.353 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeee
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKE 87 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~ 87 (252)
+|++-+..||++|++++.++||-..+|.++++ +++..+|.++|..|.+.|+|=+
T Consensus 204 ~~~~~~~~Vl~~i~~~~~~~Gi~~~~I~~~l~-~~~~~~v~~al~~L~~eG~IYs 257 (270)
T 2pi2_A 204 GLTVAQNQVLNLIKACPRPEGLNFQDLKNQLK-HMSVSSIKQAVDFLSNEGHIYS 257 (270)
T ss_dssp -------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHhCCCccCCCHHHHHHHhc-CCCHHHHHHHHHHHHhCCEEec
Confidence 57788899999999966789999999999983 4999999999999999999854
No 193
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=88.06 E-value=0.71 Score=37.37 Aligned_cols=60 Identities=13% Similarity=0.145 Sum_probs=45.5
Q ss_pred CCChHHHHHHHHHHhhcCC-----CcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEe
Q 025493 33 SLTDHERLIYDVIRSNKQD-----MGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMA 101 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~-----~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL 101 (252)
..+.++++..-+.+. +.. --+.+.+|..-+ |++...++|+|+.|+++|+|+. .++++.++
T Consensus 145 ~~~~~~Rl~~~L~~~-~~~~~~~~~~~t~~~lA~~l--g~sr~tvsR~l~~L~~~g~I~~------~~~~i~i~ 209 (220)
T 3dv8_A 145 WKSLDKRVASFLLEE-TSIEGTNELKITHETIANHL--GSHREVITRMLRYFQVEGLVKL------SRGKITIL 209 (220)
T ss_dssp HSCHHHHHHHHHHHH-HHHHTSSEECCCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEE------ETTEEEES
T ss_pred cCCHHHHHHHHHHHh-hhhcCCceecCCHHHHHHHh--CCCHHHHHHHHHHHHHCCCEEe------CCCEEEEe
Confidence 356677776666554 432 257899999999 9999999999999999999975 14556554
No 194
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=88.04 E-value=0.93 Score=37.85 Aligned_cols=62 Identities=11% Similarity=0.209 Sum_probs=46.8
Q ss_pred CCCChHHHHHHHHHHh--hcC---------CCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEE
Q 025493 32 DSLTDHERLIYDVIRS--NKQ---------DMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLM 100 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~--~ag---------~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~Ym 100 (252)
...+.++++..-+.+- ..| .--+.+.+|..-+ |++...|+|+|+.|+++|+|+. .++++.+
T Consensus 145 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~l--G~sr~tvsR~l~~L~~~g~I~~------~~~~i~i 216 (250)
T 3e6c_C 145 NTYNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEIT--GVHHVTVSRVLASLKRENILDK------KKNKIIV 216 (250)
T ss_dssp TTSCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEE------CSSEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHh--CCcHHHHHHHHHHHHHCCCeEe------CCCEEEE
Confidence 3467788776655543 033 1246899999999 9999999999999999999986 2466766
Q ss_pred e
Q 025493 101 A 101 (252)
Q Consensus 101 L 101 (252)
+
T Consensus 217 ~ 217 (250)
T 3e6c_C 217 Y 217 (250)
T ss_dssp S
T ss_pred e
Confidence 6
No 195
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=87.91 E-value=0.78 Score=33.43 Aligned_cols=47 Identities=11% Similarity=0.087 Sum_probs=37.4
Q ss_pred HHHHHHHhhhC------CCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEe
Q 025493 130 KSQCLKQIIKL------KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVK 184 (252)
Q Consensus 130 ~~~~~~~i~~~------~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~ 184 (252)
.+.|+.||+.. ..||+.||++.+. +|..-|+.-|+.|+-.|.|.++.
T Consensus 6 ~~~IL~~I~~~i~~~~g~~psv~EIa~~lg--------vS~~TVrr~L~~Le~kG~I~R~~ 58 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGAPVKTRDIADAAG--------LSIYQVRLYLEQLHDVGVLEKVN 58 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEHHHHHHHHT--------CCHHHHHHHHHHHHHTTSEEEES
T ss_pred HHHHHHHHHHHHhhccCCCcCHHHHHHHHC--------CCHHHHHHHHHHHHHCCcEEecC
Confidence 34566666554 7889999998763 46777999999999999999986
No 196
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=87.68 E-value=2.7 Score=33.26 Aligned_cols=65 Identities=14% Similarity=0.202 Sum_probs=51.9
Q ss_pred CCChHHHHHHHHHHhhcCCCcccHHHHHHHhh---cCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEe
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELK---VNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMA 101 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~---~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL 101 (252)
.+|+.-..|++++.+ ++ .-+...+|-..++ +++...+|-|.|+.|++.|||.++..-. +...|-+
T Consensus 19 r~T~qR~~Il~~L~~-~~-~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~--~~~~Y~~ 86 (145)
T 2fe3_A 19 RITPQRHAILEYLVN-SM-AHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTYGD--ASSRFDF 86 (145)
T ss_dssp CCCHHHHHHHHHHHH-CS-SCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECCTT--SCCEEEE
T ss_pred CCCHHHHHHHHHHHh-CC-CCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEeeCC--CceEEEC
Confidence 589999999999998 64 4688888877763 3799999999999999999999987643 3445543
No 197
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=87.60 E-value=0.71 Score=37.74 Aligned_cols=52 Identities=8% Similarity=0.129 Sum_probs=40.5
Q ss_pred CCChHHHHHHHHHHhhc---CC---C------cccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeee
Q 025493 33 SLTDHERLIYDVIRSNK---QD---M------GIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKE 87 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~a---g~---~------GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~ 87 (252)
..+.++++..-+.+- + |. . -+.+.+|..-+ |++...|+|+|+.|+++|+|+.
T Consensus 146 ~~~~~~Rl~~~L~~l-~~~~~~~~~~~~~i~~~~t~~~lA~~l--g~sr~tvsR~l~~l~~~g~I~~ 209 (227)
T 3d0s_A 146 FTDVPGRVAKQLLQL-AQRFGTQEGGALRVTHDLTQEEIAQLV--GASRETVNKALADFAHRGWIRL 209 (227)
T ss_dssp HSCHHHHHHHHHHHH-HHHHEEEETTEEEEECCCCHHHHHHHH--TSCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCHHHHHHHHHHHH-HHHhCCcCCCceEEcCCCCHHHHHHHh--CCcHHHHHHHHHHHHHCCCEEe
Confidence 456777776555443 3 21 1 26789999999 9999999999999999999976
No 198
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=87.38 E-value=0.74 Score=38.48 Aligned_cols=60 Identities=15% Similarity=0.131 Sum_probs=45.3
Q ss_pred CCChHHHHHHHHHHhhcC------C------CcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEE
Q 025493 33 SLTDHERLIYDVIRSNKQ------D------MGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLM 100 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag------~------~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~Ym 100 (252)
..+.++++..-+++- +. . --+-+.+|..-+ |+....|+|+|+.|+++|+|+.- ++++.+
T Consensus 162 ~~~~~~Rla~~L~~l-~~~~g~~~~~~~~i~~~lt~~~lA~~l--G~sr~tvsR~l~~L~~~GlI~~~------~~~i~I 232 (243)
T 3la7_A 162 HRDMGSRLVSFLLIL-CRDFGVPCADGITIDLKLSHQAIAEAI--GSTRVTVTRLLGDLREKKMISIH------KKKITV 232 (243)
T ss_dssp CSSHHHHHHHHHHHH-HHHHEEECSSSEEECSCCCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEE------TTEEEE
T ss_pred cCCHHHHHHHHHHHH-HHHhCCCCCCCeEEeccCCHHHHHHHH--CCcHHHHHHHHHHHHHCCCEEEc------CCEEEE
Confidence 456778776655543 32 2 236789999999 99999999999999999999852 456665
Q ss_pred e
Q 025493 101 A 101 (252)
Q Consensus 101 L 101 (252)
+
T Consensus 233 ~ 233 (243)
T 3la7_A 233 H 233 (243)
T ss_dssp C
T ss_pred C
Confidence 5
No 199
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=87.38 E-value=2.2 Score=30.09 Aligned_cols=53 Identities=9% Similarity=0.186 Sum_probs=45.0
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 129 VKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 129 l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
.+..++.+|...+.+|..||++.+... ..++..-|..+|+.|+-.|.|++.+.
T Consensus 10 ~e~~vL~~L~~~~~~t~~ei~~~l~~~----~~~s~~Tv~~~l~rL~~kGlv~r~~~ 62 (82)
T 1p6r_A 10 AELEVMKVIWKHSSINTNEVIKELSKT----STWSPKTIQTMLLRLIKKGALNHHKE 62 (82)
T ss_dssp HHHHHHHHHHTSSSEEHHHHHHHHHHH----SCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhhc----CCccHHHHHHHHHHHHHCCCeEEEec
Confidence 356788888888899999999999853 24788999999999999999998864
No 200
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=87.34 E-value=0.73 Score=37.55 Aligned_cols=51 Identities=12% Similarity=0.191 Sum_probs=40.3
Q ss_pred CChHHHHHHHHHHhhc---CC---------CcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeee
Q 025493 34 LTDHERLIYDVIRSNK---QD---------MGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKE 87 (252)
Q Consensus 34 l~~~e~~vy~~I~~~a---g~---------~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~ 87 (252)
.+.++++..-+.+- + |. -.+.+.+|..-+ |++...++|+|+.|+++|+|+.
T Consensus 137 ~~~~~Rl~~~L~~l-~~~~g~~~~~~~~~~~~~t~~~lA~~l--g~sr~tvsR~l~~l~~~g~I~~ 199 (220)
T 2fmy_A 137 KDARLRLAEFLVQA-AMDTGLKVPQGIKLELGLNTEEIALML--GTTRQTVSVLLNDFKKMGILER 199 (220)
T ss_dssp HHHHHHHHHHHHHH-HHHHCEEETTEEEEECSSCHHHHHHHH--TSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHH-HHHhCCCCCCcEEEeccCCHHHHHHHh--CCcHHHHHHHHHHHHHCCCEEE
Confidence 45667766655443 3 32 247899999999 9999999999999999999976
No 201
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=87.31 E-value=1.6 Score=34.61 Aligned_cols=55 Identities=9% Similarity=0.151 Sum_probs=46.7
Q ss_pred HHHHHHHHhhh-CCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeC
Q 025493 129 VKSQCLKQIIK-LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSN 186 (252)
Q Consensus 129 l~~~~~~~i~~-~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~ 186 (252)
-|..|+.+|.. ...+|++||++.+++.+ -.++..-|-+.|+.|+-.|.|.++...
T Consensus 23 qR~~Il~~L~~~~~~~sa~ei~~~l~~~~---~~is~aTVYR~L~~L~e~Glv~~~~~~ 78 (145)
T 2fe3_A 23 QRHAILEYLVNSMAHPTADDIYKALEGKF---PNMSVATVYNNLRVFRESGLVKELTYG 78 (145)
T ss_dssp HHHHHHHHHHHCSSCCCHHHHHHHHGGGC---TTCCHHHHHHHHHHHHHTTSEEEECCT
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhC---CCCChhhHHHHHHHHHHCCCEEEEeeC
Confidence 46678888875 46899999999999876 357899999999999999999998754
No 202
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=86.92 E-value=1.6 Score=31.95 Aligned_cols=51 Identities=14% Similarity=0.224 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhhCC---CCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEe
Q 025493 126 IKVVKSQCLKQIIKLK---VATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVK 184 (252)
Q Consensus 126 V~~l~~~~~~~i~~~~---~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~ 184 (252)
-+.+.+.++.+|...+ ..|+.+|++-+. ++...|++.|..|.-+|.|+.+.
T Consensus 8 ~~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lg--------vsr~tV~~~L~~Le~~G~I~~~g 61 (81)
T 1qbj_A 8 YQDQEQRILKFLEELGEGKATTAHDLSGKLG--------TPKKEINRVLYSLAKKGKLQKEA 61 (81)
T ss_dssp HHHHHHHHHHHHHHHCTTCCBCHHHHHHHHT--------CCHHHHHHHHHHHHHTTSEEEES
T ss_pred chHHHHHHHHHHHHcCCCCCcCHHHHHHHHC--------cCHHHHHHHHHHHHHCCCEEecC
Confidence 3566788999999888 899999998765 66789999999999999998863
No 203
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=86.91 E-value=3.8 Score=30.36 Aligned_cols=67 Identities=13% Similarity=0.131 Sum_probs=55.7
Q ss_pred ChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEecccccC
Q 025493 35 TDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPS 107 (252)
Q Consensus 35 ~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~~lePs 107 (252)
.+-|..|+.++++ . -+||-..+|...++ +|+..+.-.+|..|-+.+-|.-.| .++.-+|-+-+-.||
T Consensus 13 ~~ie~~IL~l~~~-~-P~GItd~~L~~~~p-~~~~~~r~~aIN~LL~~gkiel~K---~~~~liYr~k~~~~~ 79 (81)
T 2dk8_A 13 VEIENRIIELCHQ-F-PHGITDQVIQNEMP-HIEAQQRAVAINRLLSMGQLDLLR---SNTGLLYRIKDSGPS 79 (81)
T ss_dssp HHHHHHHHHHHHH-C-SSCEEHHHHHHHCT-TSCHHHHHHHHHHHHHHTSEEEEE---CSSSEEEEECCCCCC
T ss_pred HHHHHHHHHHHHh-C-CCCCCHHHHHHHCC-CCCHHHHHHHHHHHHHcCCeEEEe---cCCeEEEEecccccC
Confidence 3447779999988 6 69999999999995 899999999999999999998664 457778888776554
No 204
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=86.84 E-value=1 Score=36.26 Aligned_cols=58 Identities=9% Similarity=0.164 Sum_probs=43.5
Q ss_pred ChHHHHHHHHHHhhc--C---CCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEe
Q 025493 35 TDHERLIYDVIRSNK--Q---DMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMA 101 (252)
Q Consensus 35 ~~~e~~vy~~I~~~a--g---~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL 101 (252)
+.++++..-+.+- + | .--+.+++|..-+ |++...|+|+|+.|+++|+|+.- ++++.++
T Consensus 141 ~~~~Rl~~~L~~~-~~~~~~~~~~~t~~~lA~~l--g~sr~tvsR~l~~l~~~g~I~~~------~~~i~i~ 203 (216)
T 4ev0_A 141 EARNRVAYALLKL-LRQGLGPLFQIRHHELAALA--GTSRETVSRVLHALAEEGVVRLG------PGTVEVR 203 (216)
T ss_dssp HHHHHHHHHHHHH-HHTTCCSEEECCHHHHHHHH--TSCHHHHHHHHHHHHHTTSEEEE------TTEEEES
T ss_pred CHHHHHHHHHHHH-hhcCCccCCCCCHHHHHHHh--CCCHHHHHHHHHHHHHCCCEEec------CCEEEEe
Confidence 4566666655543 3 3 2346799999999 99999999999999999999752 3556554
No 205
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=86.38 E-value=0.9 Score=37.21 Aligned_cols=40 Identities=13% Similarity=0.252 Sum_probs=34.4
Q ss_pred ccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEe
Q 025493 54 IWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMA 101 (252)
Q Consensus 54 Iw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL 101 (252)
+.+++|..-+ |++...|+|+|+.|+++|+|+. .++++.++
T Consensus 176 ~t~~~iA~~l--g~sr~tvsR~l~~L~~~g~I~~------~~~~i~i~ 215 (231)
T 3e97_A 176 LGTQDIMART--SSSRETVSRVLKRLEAHNILEV------SPRSVTLL 215 (231)
T ss_dssp CCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEE------CSSCEEES
T ss_pred CCHHHHHHHh--CCcHHHHHHHHHHHHHCCcEEe------cCCEEEEe
Confidence 5789999999 9999999999999999999985 24566654
No 206
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=86.28 E-value=2 Score=35.17 Aligned_cols=61 Identities=10% Similarity=0.061 Sum_probs=46.1
Q ss_pred CCCCChHHHHHHHHHHhhcCCCc--------ccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEe
Q 025493 31 SDSLTDHERLIYDVIRSNKQDMG--------IWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMA 101 (252)
Q Consensus 31 ~~~l~~~e~~vy~~I~~~ag~~G--------Iw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL 101 (252)
....+.++++..-+.+- +...| +.+++|..-+ |++...|+|+|+.|+++| | .+ .++++.++
T Consensus 149 l~~~~~~~Rl~~~L~~~-~~~~~~~~~~~l~~t~~~iA~~l--g~sr~tvsR~l~~L~~~g-i-~~-----~~~~i~I~ 217 (237)
T 3fx3_A 149 LKAQTGAQRVAEFLLEL-CDCDTGACEVTLPYDKMLIAGRL--GMKPESLSRAFSRLKAAG-V-TV-----KRNHAEIE 217 (237)
T ss_dssp CCCCCHHHHHHHHHHHH-CCC-----EEECCSCTHHHHHHT--TCCHHHHHHHHHHHGGGT-E-EC-----CTTEEEES
T ss_pred HhcCCHHHHHHHHHHHH-hhhcCCCeEEEecCCHHHHHHHh--CCCHHHHHHHHHHHHHCC-e-Ee-----eCCEEEEc
Confidence 35678889888877776 65433 3488999999 999999999999999999 4 22 24667665
No 207
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=86.18 E-value=1.4 Score=35.80 Aligned_cols=58 Identities=9% Similarity=0.220 Sum_probs=43.6
Q ss_pred ChHHHHHHHHHHhhcCC---------CcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEe
Q 025493 35 TDHERLIYDVIRSNKQD---------MGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMA 101 (252)
Q Consensus 35 ~~~e~~vy~~I~~~ag~---------~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL 101 (252)
+.++++..-+++. +.. --+.+++|..-+ |++...|+|+|+.|+++|+|+. .++++.++
T Consensus 152 ~~~~Rl~~~L~~~-~~~~~~~~~~~~~~~t~~~lA~~l--g~sr~tvsR~l~~l~~~g~I~~------~~~~i~i~ 218 (227)
T 3dkw_A 152 NATHRVVRYLLTL-AAHAPGENCRVEIPVAKQLVAGHL--SIQPETFSRIMHRLGDEGIIHL------DGREISIL 218 (227)
T ss_dssp HHHHHHHHHHHHH-HCSSSSSCCCCCCCSCTHHHHHHT--TSCHHHHHHHHHHHHHHTSEEE------SSSCEEES
T ss_pred CHHHHHHHHHHHh-hhhcCCCCeEEEecCCHHHHHHHh--CCCHHHHHHHHHHHHHCCcEEe------cCCEEEEe
Confidence 4567766555554 432 236789999999 9999999999999999999975 24556554
No 208
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=86.15 E-value=0.69 Score=42.13 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeec
Q 025493 37 HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVN 90 (252)
Q Consensus 37 ~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vks 90 (252)
.++.|+++|. + ..+.+.+|.+++ +|...+++++++.|++.|+|++...
T Consensus 21 ~~~~il~~l~-~---~~~sr~~la~~~--gls~~tv~~~v~~L~~~gli~~~~~ 68 (380)
T 2hoe_A 21 NISRILKRIM-K---SPVSRVELAEEL--GLTKTTVGEIAKIFLEKGIVVEEKD 68 (380)
T ss_dssp -CCCSHHHHH-H---SCBCHHHHHHHH--TCCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred HHHHHHHHHH-c---CCcCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEeecC
Confidence 3456888887 3 469999999999 9999999999999999999999764
No 209
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=86.14 E-value=1.9 Score=34.59 Aligned_cols=66 Identities=12% Similarity=0.132 Sum_probs=52.0
Q ss_pred CCChHHHHHHHHHHhhcCCCcccHHHHHHHhh---cCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEe
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELK---VNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMA 101 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~---~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL 101 (252)
.+|..-..|++++.+ ++..-+...+|-..+. +++...+|-|.|+.|++.|+|.++..-. +...|-+
T Consensus 14 r~T~qR~~Il~~L~~-~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~--~~~~Y~~ 82 (150)
T 2w57_A 14 KVTLPRLKILEVLQQ-PECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHHFEG--GKSVFEL 82 (150)
T ss_dssp CCCHHHHHHHHHHTS-GGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEECGG--GCEEEEE
T ss_pred CCCHHHHHHHHHHHh-CCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEEEeCC--CceEEEe
Confidence 578898999999988 6535678888877652 3799999999999999999999986543 3445644
No 210
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=85.76 E-value=1.5 Score=26.83 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=33.9
Q ss_pred CCCChHHH-HHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcC
Q 025493 32 DSLTDHER-LIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKS 83 (252)
Q Consensus 32 ~~l~~~e~-~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~ 83 (252)
..|+++++ .|..+. . .|+..++|.+.+ +++..+|.+.++..+..|
T Consensus 4 ~~l~~~~~~~i~~~~-~----~g~s~~~IA~~l--gis~~Tv~~~~~~~~~~g 49 (51)
T 1tc3_C 4 SALSDTERAQLDVMK-L----LNVSLHEMSRKI--SRSRHCIRVYLKDPVSYG 49 (51)
T ss_dssp CCCCHHHHHHHHHHH-H----TTCCHHHHHHHH--TCCHHHHHHHHHCSTTTT
T ss_pred CCCCHHHHHHHHHHH-H----cCCCHHHHHHHH--CcCHHHHHHHHhhHHhcC
Confidence 35777776 444443 2 378899999999 999999999998766543
No 211
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=85.36 E-value=2 Score=33.39 Aligned_cols=57 Identities=16% Similarity=0.202 Sum_probs=46.7
Q ss_pred CChHHHHHHHHHHhhcCCCcccHHHHHHHhh---cCCChHHHHHHHHHHHhcCCeeeeeccc
Q 025493 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELK---VNLPDNIVTKSIKSLQNKSLIKEVVNIH 92 (252)
Q Consensus 34 l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~---~~l~~~~l~k~lK~Le~k~lIK~vksv~ 92 (252)
+|..-..|++++.+ + +.-+...+|-.+++ +++...+|-|.|+.|++.|+|.++..-.
T Consensus 9 ~T~qR~~Il~~l~~-~-~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~~~ 68 (131)
T 2o03_A 9 STRQRAAISTLLET-L-DDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHTDT 68 (131)
T ss_dssp HHHHHHHHHHHHHH-C-CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEECTT
T ss_pred CCHHHHHHHHHHHh-C-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEeCC
Confidence 57777889999988 6 34677888877652 3899999999999999999999987654
No 212
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=85.31 E-value=0.58 Score=34.84 Aligned_cols=48 Identities=10% Similarity=0.178 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEE
Q 025493 127 KVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEV 183 (252)
Q Consensus 127 ~~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v 183 (252)
..+++.++.+|+..+ .|+.||++-+ .+|...|.+.|..|+-+|.|...
T Consensus 16 ~~~~~~IL~lL~~~g-~sa~eLAk~L--------giSk~aVr~~L~~Le~eG~I~~~ 63 (82)
T 1oyi_A 16 AEIVCEAIKTIGIEG-ATAAQLTRQL--------NMEKREVNKALYDLQRSAMVYSS 63 (82)
T ss_dssp HHHHHHHHHHHSSST-EEHHHHHHHS--------SSCHHHHHHHHHHHHHHTSSEEC
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEeC
Confidence 577888889999776 9999998754 47889999999999999999875
No 213
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=84.97 E-value=1.6 Score=34.98 Aligned_cols=54 Identities=6% Similarity=0.047 Sum_probs=46.4
Q ss_pred HHHHHHHHhhhC--CCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 129 VKSQCLKQIIKL--KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 129 l~~~~~~~i~~~--~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
-|..|+.+|... ..+|++||++.+++.+ -.++..-|.+.|+.|+-.|.|.++..
T Consensus 18 qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~---~~is~aTVYR~L~~L~e~Glv~~~~~ 73 (150)
T 2w57_A 18 PRLKILEVLQQPECQHISAEELYKKLIDLG---EEIGLATVYRVLNQFDDAGIVTRHHF 73 (150)
T ss_dssp HHHHHHHHHTSGGGSSEEHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhC---CCCCHHHHHHHHHHHHHCCcEEEEEe
Confidence 467788888754 6899999999999876 35789999999999999999999874
No 214
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=84.54 E-value=1.5 Score=39.06 Aligned_cols=50 Identities=14% Similarity=0.273 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCee-eee
Q 025493 37 HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIK-EVV 89 (252)
Q Consensus 37 ~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK-~vk 89 (252)
+++++..+..- --..|+-+++|.+++ ++...+|.|-|+.|+++|+|+ ++.
T Consensus 6 ~~~~~~~ia~l-~~~~~~~~~ela~~l--~vS~~tIrRdL~~l~~~G~v~iri~ 56 (315)
T 2w48_A 6 DIRLIVKIAQL-YYEQDMTQAQIAREL--GIYRTTISRLLKRGREQGIVTIAIN 56 (315)
T ss_dssp HHHHHHHHHHH-HHTSCCCHHHHHHHT--TCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHH-HHcCCCCHHHHHHHH--CcCHHHHHHHHHHHHHCCcEEEEec
Confidence 45566555555 667889999999999 999999999999999999998 763
No 215
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=84.40 E-value=3.1 Score=33.04 Aligned_cols=65 Identities=14% Similarity=0.192 Sum_probs=51.2
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhh---cCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEe
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELK---VNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMA 101 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~---~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL 101 (252)
-.+|..-+.|++++.+ ++ -+...+|-.+.. +++...+|-|.|+.|++.|+|.++..-.. ...|-+
T Consensus 15 ~r~T~qR~~Il~~l~~-~~--h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~~~~~--~~~Y~~ 82 (145)
T 3eyy_A 15 YRLTPQRQLVLEAVDT-LE--HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAHLGHG--APTYHL 82 (145)
T ss_dssp CCCCHHHHHHHHHHHH-HS--SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEECGGG--CEEEEE
T ss_pred CCcCHHHHHHHHHHHh-cC--CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEEeCCC--ceEEEe
Confidence 3578898999999999 76 688878766542 37899999999999999999999876433 344543
No 216
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=84.38 E-value=2.5 Score=33.81 Aligned_cols=65 Identities=8% Similarity=0.134 Sum_probs=51.1
Q ss_pred CCChHHHHHHHHHHhhcCCCcccHHHHHHHhh---cCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEe
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELK---VNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMA 101 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~---~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL 101 (252)
.+|..-..|++++.+ ++. -+...+|-..++ +++...+|-|.|+.|++.|+|.++..-. +...|-+
T Consensus 24 r~T~qR~~IL~~l~~-~~~-~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~--~~~~Y~~ 91 (150)
T 2xig_A 24 KNSKQREEVVSVLYR-SGT-HLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVLETSK--SGRRYEI 91 (150)
T ss_dssp -CHHHHHHHHHHHHH-CSS-CBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEETT--TEEEEEE
T ss_pred CCCHHHHHHHHHHHh-CCC-CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEEEeCC--CceEEEe
Confidence 578888899999998 743 678888876652 3799999999999999999999987654 3455543
No 217
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=83.68 E-value=2.6 Score=28.56 Aligned_cols=45 Identities=20% Similarity=0.346 Sum_probs=38.3
Q ss_pred CCCCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHh
Q 025493 30 PSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQN 81 (252)
Q Consensus 30 ~~~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~ 81 (252)
....|++.|+.|+.++ . .|...++|...+ |++.+.|.+.++.+..
T Consensus 8 ~~~~L~~~e~~il~~~-~----~g~s~~eIA~~l--~is~~tV~~~~~~~~~ 52 (74)
T 1fse_A 8 SKPLLTKREREVFELL-V----QDKTTKEIASEL--FISEKTVRNHISNAMQ 52 (74)
T ss_dssp CCCCCCHHHHHHHHHH-T----TTCCHHHHHHHH--TSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH-H----cCCCHHHHHHHH--CCCHHHHHHHHHHHHH
Confidence 4678999999999886 3 367999999999 9999999999888653
No 218
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=83.54 E-value=4 Score=33.18 Aligned_cols=58 Identities=9% Similarity=0.141 Sum_probs=47.1
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHh-----hcCCChHHHHHHHHHHHhcCCeeeeecc
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKREL-----KVNLPDNIVTKSIKSLQNKSLIKEVVNI 91 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~-----~~~l~~~~l~k~lK~Le~k~lIK~vksv 91 (252)
-.+|..-+.|++++.+ ++ .-+...+|-.+. ++++...+|-|.|+.|++.|+|.++..-
T Consensus 29 ~r~T~qR~~IL~~L~~-~~-~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i~~~ 91 (162)
T 4ets_A 29 LKYTKQREVLLKTLYH-SD-THYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFG 91 (162)
T ss_dssp CCCCHHHHHHHHHHHS-CC-SCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEECC--
T ss_pred CCCCHHHHHHHHHHHh-CC-CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 3578888999999998 75 678888776543 3489999999999999999999998653
No 219
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=83.39 E-value=1.4 Score=38.80 Aligned_cols=45 Identities=16% Similarity=0.287 Sum_probs=37.2
Q ss_pred HHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeee
Q 025493 40 LIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEV 88 (252)
Q Consensus 40 ~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~v 88 (252)
.|+.++.+ ++ .++-..+|-.++ +||.+++.|+|++|+..|++...
T Consensus 34 ~IL~~l~~-~~-~~ltl~eia~~l--gl~ksTv~RlL~tL~~~G~v~~~ 78 (275)
T 3mq0_A 34 RILDLVAG-SP-RDLTAAELTRFL--DLPKSSAHGLLAVMTELDLLARS 78 (275)
T ss_dssp HHHHHHHH-CS-SCEEHHHHHHHH--TCC--CHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHhh-CC-CCCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEC
Confidence 36666666 54 689999999999 99999999999999999999874
No 220
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=83.33 E-value=1.7 Score=31.08 Aligned_cols=52 Identities=21% Similarity=0.362 Sum_probs=39.4
Q ss_pred cCCCCCCCCCCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHh
Q 025493 23 KRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQN 81 (252)
Q Consensus 23 ~~~~~~~~~~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~ 81 (252)
...........|++.|+.|+.++ . .|...++|..++ ++..++|.+.++.+-+
T Consensus 11 ~~~~~~~~~~~Lt~~e~~vl~l~-~----~g~s~~eIA~~l--~is~~tV~~~l~r~~~ 62 (82)
T 1je8_A 11 GSATTERDVNQLTPRERDILKLI-A----QGLPNKMIARRL--DITESTVKVHVKHMLK 62 (82)
T ss_dssp ------CCGGGSCHHHHHHHHHH-T----TTCCHHHHHHHH--TSCHHHHHHHHHHHHH
T ss_pred CchHHHHHHccCCHHHHHHHHHH-H----cCCCHHHHHHHH--CcCHHHHHHHHHHHHH
Confidence 34445556788999999999986 3 478999999999 9999999988877644
No 221
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=83.13 E-value=5.1 Score=31.55 Aligned_cols=114 Identities=16% Similarity=0.182 Sum_probs=72.3
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEecccccCCCcc
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDIS 111 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~~lePs~eiT 111 (252)
+.++.+++. .++.. . ..|...++|.+.+ +++.++|.+.++..+..|.... .| .
T Consensus 24 ~~~s~e~r~--~ii~l-~-~~G~s~~~IA~~l--gis~~TV~rwl~r~~~~G~~~~-----------------~~----r 76 (159)
T 2k27_A 24 RPLPEVVRQ--RIVDL-A-HQGVRPCDISRQL--RVSHGCVSKILGRYYETGSIRP-----------------GV----I 76 (159)
T ss_dssp CSSCHHHHH--HHHHH-H-HHTCCHHHHHHHH--TCCSHHHHHHHCCSSTTSCCCC-----------------CC----C
T ss_pred CCCCHHHHH--HHHHH-H-HcCCCHHHHHHHH--CcCHHHHHHHHHHHHhcCCccC-----------------CC----C
Confidence 357777653 23333 2 2478999999999 9999999999998766554321 00 0
Q ss_pred CCccccCCcCCHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCc--ceecCHHHHHHHHHHHhhcC
Q 025493 112 GGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAF--KVDLTKQQIEEIVRAVVLDN 178 (252)
Q Consensus 112 GG~wy~d~e~D~efV~~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~--~~~Ls~~di~~IL~tLVyDg 178 (252)
+|. ....++.++.+. +..++......|+.+|.+.+...++. .+.+|..-|..+|....-.|
T Consensus 77 ~gr--~~~~~~~~~~~~----I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~~~ 139 (159)
T 2k27_A 77 GGS--KPKVATPKVVEK----IGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQP 139 (159)
T ss_dssp CCC--CCCCCCTTHHHH----HHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSCCC
T ss_pred CCC--CCCCCCHHHHHH----HHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhCCC
Confidence 110 011233334333 33444555678999999999877642 24688899999988765444
No 222
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=82.84 E-value=2.5 Score=36.22 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=40.3
Q ss_pred CChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeee
Q 025493 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVV 89 (252)
Q Consensus 34 l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vk 89 (252)
++....-.+.+|.. . +..+-+++|..++ ++....|+..+|.|+++|||..-+
T Consensus 13 ls~s~EdYLk~I~~-L-~~~V~~~~LA~~L--gvS~~SV~~~lkkL~e~GLV~~~~ 64 (200)
T 2p8t_A 13 PEYTVEDVLAVIFL-L-KEPLGRKQISERL--ELGEGSVRTLLRKLSHLDIIRSKQ 64 (200)
T ss_dssp -CCCHHHHHHHHHH-T-TSCBCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEC-
T ss_pred CCCCHHHHHHHHHH-H-cCCccHHHHHHHh--CCCHHHHHHHHHHHHHCCCEEEeC
Confidence 33333334456666 5 4679999999999 999999999999999999997743
No 223
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=82.84 E-value=2.4 Score=34.53 Aligned_cols=53 Identities=11% Similarity=0.122 Sum_probs=44.5
Q ss_pred HHHHHHHhhhC-CCCCHHHHHHHHHHc--CCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 130 KSQCLKQIIKL-KVATLEGISDSIKRS--GAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 130 ~~~~~~~i~~~-~~~T~~~I~~~i~~~--~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
|..|+++|... ..+|++||++.+++. + -.++..-|-+.|+.|+-.|.|.++..
T Consensus 35 R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~---~~is~aTVYRtL~~L~e~Glv~~i~~ 90 (162)
T 4ets_A 35 REVLLKTLYHSDTHYTPESLYMEIKQAEPD---LNVGIATVYRTLNLLEEAEMVTSISF 90 (162)
T ss_dssp HHHHHHHHHSCCSCBCHHHHHHHHHHHCGG---GCCCHHHHHHHHHHHHHTTSEEECC-
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhhcCC---CCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 56778887654 789999999999987 4 35789999999999999999998864
No 224
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=82.66 E-value=2.2 Score=33.70 Aligned_cols=65 Identities=11% Similarity=0.128 Sum_probs=50.8
Q ss_pred CCChHHHHHHHHHHhhcCCCcccHHHHHHHhh---cCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEe
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELK---VNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMA 101 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~---~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL 101 (252)
.+|..-+.|++++.+ ++. -+...+|-.+++ +++...+|-|.|+.|++.|+|.++..-. +...|-+
T Consensus 11 r~T~qR~~Il~~L~~-~~~-h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~--g~~~Y~~ 78 (139)
T 3mwm_A 11 RATRQRAAVSAALQE-VEE-FRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTAE--GESVYRR 78 (139)
T ss_dssp HHHHHHHHHHHHHTT-CSS-CEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECTT--SCEEEEC
T ss_pred ccCHHHHHHHHHHHh-CCC-CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcCC--CceEEEE
Confidence 467788889999988 653 788888877653 3799999999999999999999987643 3445644
No 225
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=82.65 E-value=2.4 Score=42.70 Aligned_cols=148 Identities=7% Similarity=0.076 Sum_probs=95.2
Q ss_pred CCCCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeee--------ccccCCeeeEEe
Q 025493 30 PSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVV--------NIHNKGKKHLMA 101 (252)
Q Consensus 30 ~~~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vk--------sv~~~~rK~YmL 101 (252)
+.-..|..+..|+-+..+ . ..+.-.+|...| +|+...+.++|..|...+++..-+ .|. ++-...+=
T Consensus 583 ~~l~vs~~Qa~iLllFn~-~--~~~t~~ei~~~t--~i~~~~l~r~L~~l~k~~iL~~~~~~~~~~~~~~~-~~~~f~lN 656 (760)
T 1ldj_A 583 YTLQASTFQMAILLQYNT-E--DAYTVQQLTDST--QIKMDILAQVLQILLKSKLLVLEDENANVDEVELK-PDTLIKLY 656 (760)
T ss_dssp CEEECCHHHHHHHHGGGS-S--SEEEHHHHHHHT--CCCHHHHHHHHHHHHHTTTEECSCTTCCTTTCCCC-TTCEEEEC
T ss_pred EEEEEcHHHHHHHHHhcC-C--CCcCHHHHHHHH--CcCHHHHHHHHHHHHHCCcceeCCCccccccCCCC-CCCEEEee
Confidence 344678889888876655 3 567889999999 999999999999999999887321 011 01111111
Q ss_pred cccccCC---CccCCcccc---------CCcCCHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHH
Q 025493 102 VEFEPSK---DISGGAWYS---------EGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEE 169 (252)
Q Consensus 102 ~~lePs~---eiTGG~wy~---------d~e~D~efV~~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~ 169 (252)
.++.... .|.. +-=. ..+.+.+=...|..+|.+.+..+...+-+++..-+.+.=-.+...+..+|.+
T Consensus 657 ~~F~~k~~ri~i~~-~~~~e~~~e~~~~~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk 735 (760)
T 1ldj_A 657 LGYKNKKLRVNINV-PMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKK 735 (760)
T ss_dssp SSCCCSSSSBCCCC-CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHHTTTCCCCHHHHHH
T ss_pred ccccCCceEEEecC-ccccccchhhhhHHHHHHHHHHhHheeeehhhhhccCCCcHHHHHHHHHHHHhccCCCCHHHHHH
Confidence 1111100 0000 0000 0112222223677888888888888888888776554321356789999999
Q ss_pred HHHHHhhcCeeEEEe
Q 025493 170 IVRAVVLDNQIMEVK 184 (252)
Q Consensus 170 IL~tLVyDgkIE~v~ 184 (252)
-|+.|+--+-|++..
T Consensus 736 ~Ie~LIereYl~R~~ 750 (760)
T 1ldj_A 736 CIDILIEKEYLERVD 750 (760)
T ss_dssp HHHHHHHTTSEEECS
T ss_pred HHHHHhhccceeeCC
Confidence 999999999999864
No 226
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=82.58 E-value=1.1 Score=38.78 Aligned_cols=47 Identities=15% Similarity=0.116 Sum_probs=38.6
Q ss_pred HHHHHHHhhc-CCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeee
Q 025493 40 LIYDVIRSNK-QDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEV 88 (252)
Q Consensus 40 ~vy~~I~~~a-g~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~v 88 (252)
..+.+++..+ .+.++-..+|-+++ +++.+.+.|+|++|+..|+|..-
T Consensus 15 r~l~iL~~l~~~~~~~~~~eia~~~--gl~~stv~r~l~~L~~~G~v~~~ 62 (257)
T 2g7u_A 15 RGFAVLLAFDAQRPNPTLAELATEA--GLSRPAVRRILLTLQKLGYVAGS 62 (257)
T ss_dssp HHHHHHHTCSSSCSSCBHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEeC
Confidence 3445555523 24689999999999 99999999999999999999873
No 227
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=82.20 E-value=3 Score=30.65 Aligned_cols=47 Identities=28% Similarity=0.398 Sum_probs=38.5
Q ss_pred CCCCCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhc
Q 025493 29 APSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNK 82 (252)
Q Consensus 29 ~~~~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k 82 (252)
.....||+.|+.|+.++.+ |...++|...+ ++..++|...++.+-.|
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~~-----G~s~~eIA~~L--~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVEK-----GFTNQEIADAL--HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp ----CCCHHHHHHHHHHHT-----TCCHHHHHHHH--TCCHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHc-----CCCHHHHHHHH--CcCHHHHHHHHHHHHHH
Confidence 3467899999999999865 89999999999 99999999988887443
No 228
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=81.85 E-value=2 Score=32.50 Aligned_cols=33 Identities=6% Similarity=0.312 Sum_probs=31.1
Q ss_pred cHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeee
Q 025493 55 WTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVV 89 (252)
Q Consensus 55 w~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vk 89 (252)
..++|..+. ++..+.|.++|+.|++.|+|...+
T Consensus 45 s~~eLa~~l--gVSr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 45 VASKIADRV--GITRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp CHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEEe
Confidence 899999999 999999999999999999998863
No 229
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=81.82 E-value=15 Score=31.57 Aligned_cols=106 Identities=8% Similarity=0.050 Sum_probs=72.6
Q ss_pred HHhhcCCCcccHHHHHHHhhcC-------CChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEecccccCCCccCCcccc
Q 025493 45 IRSNKQDMGIWTRDMKRELKVN-------LPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYS 117 (252)
Q Consensus 45 I~~~ag~~GIw~~dik~~~~~~-------l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~~lePs~eiTGG~wy~ 117 (252)
... +|.. |--.|++... | +.+..+.|+++.|+..|+==++..+. +.++++- . .|
T Consensus 89 ~~~-~GG~-I~L~dl~~~~--nraRG~~lVSp~Dl~~A~~~l~~Lg~~~~l~~~~--sg~~vvq-s-~~----------- 149 (218)
T 3cuq_B 89 LEE-RGGI-MSLTEVYCLV--NRARGMELLSPEDLVNACKMLEALKLPLRLRVFD--SGVMVIE-L-QS----------- 149 (218)
T ss_dssp HHH-TTSE-EEHHHHHHHH--HHTCSSSCCCHHHHHHHHHTTTTTTCSEEEEECT--TSBEEEE-E-TT-----------
T ss_pred HHh-CCCe-EEHHHHHHHH--HHHcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEC--CCcEEEE-c-CC-----------
Confidence 444 4544 7777887766 4 89999999999999988754555554 2333332 1 11
Q ss_pred CCcCCHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEE
Q 025493 118 EGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEV 183 (252)
Q Consensus 118 d~e~D~efV~~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v 183 (252)
.++ +.....++.+++..+++|+.++.+-+ ..+..=.++.|+.++-+|.+-+=
T Consensus 150 -~~~-----~~~~~~il~~~~~~g~vt~~~la~~l--------~ws~~~a~e~L~~~e~~G~l~~D 201 (218)
T 3cuq_B 150 -HKE-----EEMVASALETVSEKGSLTSEEFAKLV--------GMSVLLAKERLLLAEKMGHLCRD 201 (218)
T ss_dssp -CCG-----GGGHHHHHHHHHHTSCBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred -Cch-----HHHHHHHHHHHHHCCCcCHHHHHHHh--------CCCHHHHHHHHHHHHHcCCEEEE
Confidence 121 12334455566678999999999766 36677888999999999999764
No 230
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=81.33 E-value=0.3 Score=44.37 Aligned_cols=49 Identities=14% Similarity=0.193 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCee
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIK 86 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK 86 (252)
.+++.+..|+..|.. +.|+.+++|..++ ++...+|+|.|+.||++|+|+
T Consensus 17 ~~~~r~~~iL~~l~~---~~~~t~~eLa~~l--~vs~~Tv~r~l~~Le~~Glv~ 65 (345)
T 2o0m_A 17 DVLQERFQILRNIYW---MQPIGRRSLSETM--GITERVLRTETDVLKQLNLIE 65 (345)
T ss_dssp ------------------------------------------------------
T ss_pred HhhHHHHHHHHHHHH---cCCCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEE
Confidence 355666677777776 3589999999999 999999999999999999997
No 231
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=81.29 E-value=3.2 Score=32.25 Aligned_cols=55 Identities=20% Similarity=0.349 Sum_probs=41.0
Q ss_pred HHHHHHHHhhcCCCc-------c-cHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEe
Q 025493 39 RLIYDVIRSNKQDMG-------I-WTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMA 101 (252)
Q Consensus 39 ~~vy~~I~~~ag~~G-------I-w~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL 101 (252)
..||+.|.+ .=..| + ..++|..+. ++..+.|.++|+.|+..|+|... +++-.|+.
T Consensus 14 ~~i~~~l~~-~I~~g~~~~G~~lPse~~La~~~--~vSr~tvr~Al~~L~~~Gli~~~-----~g~G~~V~ 76 (126)
T 3by6_A 14 LQLVDRIKN-EVATDVLSANDQLPSVRETALQE--KINPNTVAKAYKELEAQKVIRTI-----PGKGTFIT 76 (126)
T ss_dssp HHHHHHHHH-HHHTTSSCTTCEECCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEE-----TTTEEEEC
T ss_pred HHHHHHHHH-HHHhCCCCCCCcCcCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEe-----cCCeEEEc
Confidence 356666655 32222 3 689999999 99999999999999999999875 34545543
No 232
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=80.75 E-value=1.6 Score=36.97 Aligned_cols=68 Identities=13% Similarity=0.220 Sum_probs=51.5
Q ss_pred ccc-cCCcCCHHHHHHHHHHHHHHhhh-------CCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 114 AWY-SEGSLDTEFIKVVKSQCLKQIIK-------LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 114 ~wy-~d~e~D~efV~~l~~~~~~~i~~-------~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
.|| .++-+ ..++.++..|++-+-+ ..-.++++|+.-++-+|. -.++.+|+|.||-.|++||.|+-.-+
T Consensus 107 ~~f~~~~~~--lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~--~~~~~~evE~ila~lI~~G~Ikg~I~ 182 (203)
T 3t5x_A 107 AFFIRCGIF--LILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQV--EDVDIDEVQCILANLIYMGHVKGYIS 182 (203)
T ss_dssp HHHHHHTCH--HHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTC--TTCCHHHHHHHHHHHHHHTSSCEEEE
T ss_pred HHHHHCChH--HHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHHcCceEEEEc
Confidence 355 45554 4578888888766643 456789999999987763 34689999999999999999985443
No 233
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=80.64 E-value=2.4 Score=30.39 Aligned_cols=49 Identities=14% Similarity=0.228 Sum_probs=42.0
Q ss_pred HHHHHHHHHhhhCC---CCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEe
Q 025493 128 VVKSQCLKQIIKLK---VATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVK 184 (252)
Q Consensus 128 ~l~~~~~~~i~~~~---~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~ 184 (252)
.+.+.++.+|...+ ..|+.||++-+. ++...|.+.|..|.-+|.|+++.
T Consensus 14 ~~~~~IL~~L~~~~~~~~~t~~eLA~~Lg--------vs~~tV~~~L~~L~~~G~I~~~g 65 (77)
T 1qgp_A 14 DQEQRILKFLEELGEGKATTAHDLSGKLG--------TPKKEINRVLYSLAKKGKLQKEA 65 (77)
T ss_dssp HHHHHHHHHHHHHCSSSCEEHHHHHHHHC--------CCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHC--------cCHHHHHHHHHHHHHCCCEEecC
Confidence 44678889999888 899999998764 66788999999999999999874
No 234
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=80.59 E-value=4.7 Score=29.34 Aligned_cols=55 Identities=15% Similarity=0.098 Sum_probs=41.9
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCcce---ecCHHHHHHHHHHHhhcCeeEEE
Q 025493 129 VKSQCLKQIIKLKVATLEGISDSIKRSGAFKV---DLTKQQIEEIVRAVVLDNQIMEV 183 (252)
Q Consensus 129 l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~---~Ls~~di~~IL~tLVyDgkIE~v 183 (252)
.-..|.-.|.+.+...++.||..++=--.... ..|.+++++.|+.||-+|+++.+
T Consensus 9 ~w~yI~GMLtN~~slpl~RIh~mLkmf~~~~~~~~~it~~eL~~fL~~~v~e~kL~~~ 66 (74)
T 1ldd_A 9 SLPFIEGMLTNLGAMKLHKIHSFLKITVPKDWGYNRITLQQLEGYLNTLADEGRLKYI 66 (74)
T ss_dssp HHHHHHHHHHHHCSEEHHHHHHHHHHHSCGGGCCTTCCHHHHHHHHHHHHHTTSEECC
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCCcCCHHHHHHHHHHHHhCCeEEEe
Confidence 33444555568899999999999996543322 35779999999999999999853
No 235
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=80.17 E-value=7.6 Score=26.63 Aligned_cols=51 Identities=6% Similarity=0.169 Sum_probs=41.0
Q ss_pred CCCCCCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHH----HHHHHH
Q 025493 28 NAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTK----SIKSLQ 80 (252)
Q Consensus 28 ~~~~~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k----~lK~Le 80 (252)
...+..|++.|+.|+.+..-..|..|...++|...+ |++...|.+ +++.|.
T Consensus 5 ~~~l~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l--~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 5 EKALSKLSEREAMVLKMRKGLIDGREHTLEEVGAYF--GVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SSSTTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHH--TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHhcccCCCCCHHHHHHHH--CCCHHHHHHHHHHHHHHHH
Confidence 345778999999999888742667899999999999 999888766 555554
No 236
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=80.03 E-value=12 Score=28.52 Aligned_cols=79 Identities=14% Similarity=0.174 Sum_probs=55.3
Q ss_pred CCHHHHHH-HHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeCCCCCcccccCCcc
Q 025493 121 LDTEFIKV-VKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKV 199 (252)
Q Consensus 121 ~D~efV~~-l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~g~~~f~~~~~g~~ 199 (252)
.+.+|+.- +.-.++..|.. +..+--+|.+.|.+..-....++..-|-.+|+.|+-+|.|+....... ....++
T Consensus 4 ~~~~~~~g~l~~~IL~~L~~-~~~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~~~~~~-----~~~~rk 77 (116)
T 3f8b_A 4 IPKEMLRAQTNVILLNVLKQ-GDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSYWGDES-----QGGRRK 77 (116)
T ss_dssp -CHHHHHHHHHHHHHHHHHH-CCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEEEEC---------CCEE
T ss_pred cHHHHHhchHHHHHHHHHHh-CCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEEeeccC-----CCCCce
Confidence 34556544 44456666664 678899999999987655568999999999999999999998653110 012457
Q ss_pred eeeccc
Q 025493 200 CYKNVS 205 (252)
Q Consensus 200 ~YR~~~ 205 (252)
.|+++.
T Consensus 78 ~Y~LT~ 83 (116)
T 3f8b_A 78 YYRLTE 83 (116)
T ss_dssp EEEECH
T ss_pred EEEECH
Confidence 787764
No 237
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=79.96 E-value=1.2 Score=38.70 Aligned_cols=46 Identities=15% Similarity=0.130 Sum_probs=38.7
Q ss_pred HHHHHHHhhc-CCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeee
Q 025493 40 LIYDVIRSNK-QDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKE 87 (252)
Q Consensus 40 ~vy~~I~~~a-g~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~ 87 (252)
..+.+++..+ ...++-..+|..++ +|+.+.+.|+|++|+..|+|..
T Consensus 22 r~l~iL~~l~~~~~~~~~~eia~~~--gl~~stv~r~l~tL~~~G~v~~ 68 (265)
T 2ia2_A 22 RGLAVIRCFDHRNQRRTLSDVARAT--DLTRATARRFLLTLVELGYVAT 68 (265)
T ss_dssp HHHHHHHTCCSSCSSEEHHHHHHHH--TCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEe
Confidence 3555666533 35789999999999 9999999999999999999987
No 238
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=79.82 E-value=10 Score=24.86 Aligned_cols=48 Identities=17% Similarity=0.344 Sum_probs=36.9
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeC
Q 025493 132 QCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSN 186 (252)
Q Consensus 132 ~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~ 186 (252)
.+..++...+.+|++||++.+++.+ ..+|..-|.+-|+.| |.| ++...
T Consensus 9 ~i~~ll~~~~~~t~~el~~~l~~~~---~~vs~~Tv~R~L~~l---g~v-~~~~~ 56 (64)
T 2p5k_A 9 KIREIITSNEIETQDELVDMLKQDG---YKVTQATVSRDIKEL---HLV-KVPTN 56 (64)
T ss_dssp HHHHHHHHSCCCSHHHHHHHHHHTT---CCCCHHHHHHHHHHH---TCE-EEEET
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhC---CCcCHHHHHHHHHHc---CCE-EEecC
Confidence 3556777888999999999999886 357888888888844 677 76643
No 239
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=79.80 E-value=0.38 Score=39.36 Aligned_cols=52 Identities=13% Similarity=0.268 Sum_probs=0.9
Q ss_pred CCChHHHHHHHHHHhhcCCCc-----ccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeee
Q 025493 33 SLTDHERLIYDVIRSNKQDMG-----IWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKE 87 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~G-----Iw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~ 87 (252)
..+.+|++..-+.+. +...| +.+.+|..-+ |++...|+|+|+.|+++|+|+.
T Consensus 140 ~~~~~~Rl~~~L~~~-~~~~g~~~~~~t~~~lA~~l--g~sr~tvsR~l~~L~~~G~I~~ 196 (213)
T 1o5l_A 140 TKTLREKLMNFLVRH-MNEKRELTLPVTLEELSRLF--GCARPALSRVFQELEREGYIEK 196 (213)
T ss_dssp CC----------------------------------------------------------
T ss_pred hCCHHHHHHHHHHHH-hccCCcccCCCCHHHHHHHh--CCCHHHHHHHHHHHHHCCeEEE
Confidence 345566666655555 64444 6788999999 9999999999999999999975
No 240
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=79.39 E-value=4.2 Score=29.80 Aligned_cols=46 Identities=22% Similarity=0.440 Sum_probs=35.1
Q ss_pred CCCCCCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHH
Q 025493 28 NAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQ 80 (252)
Q Consensus 28 ~~~~~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le 80 (252)
...+..|++.|+.|+.++.+ |...++|...+ +++.++|.+.++..-
T Consensus 22 ~~~l~~Lt~~e~~vl~l~~~-----g~s~~eIA~~l--~is~~tV~~~l~r~~ 67 (95)
T 3c57_A 22 QDPLSGLTDQERTLLGLLSE-----GLTNKQIADRM--FLAEKTVKNYVSRLL 67 (95)
T ss_dssp -----CCCHHHHHHHHHHHT-----TCCHHHHHHHH--TCCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHc-----CCCHHHHHHHH--CcCHHHHHHHHHHHH
Confidence 34577899999999999844 88999999999 999998877766554
No 241
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=78.83 E-value=2.8 Score=36.30 Aligned_cols=46 Identities=15% Similarity=0.248 Sum_probs=38.1
Q ss_pred HHHHHHhhcC-CCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeee
Q 025493 41 IYDVIRSNKQ-DMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEV 88 (252)
Q Consensus 41 vy~~I~~~ag-~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~v 88 (252)
.+++++..+. +.++-..+|-.++ +|+.+++.|.|++|+..|+|...
T Consensus 8 al~IL~~l~~~~~~lsl~eia~~l--gl~ksT~~RlL~tL~~~G~v~~~ 54 (260)
T 3r4k_A 8 ALTLLTYFNHGRLEIGLSDLTRLS--GMNKATVYRLMSELQEAGFVEQV 54 (260)
T ss_dssp HHHHHTTCBTTBSEEEHHHHHHHH--CSCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHhhCCCCCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEc
Confidence 3445555333 5789999999999 99999999999999999999863
No 242
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=78.80 E-value=16 Score=26.51 Aligned_cols=107 Identities=19% Similarity=0.209 Sum_probs=66.5
Q ss_pred CCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEecccccCCCccC
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISG 112 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~~lePs~eiTG 112 (252)
.++.+++. .+|.. . ..|...++|.+.+ +++.++|.+.++.....|....- | .+
T Consensus 17 ~~s~~~r~--~i~~~-~-~~g~s~~~ia~~l--gis~~Tv~~w~~~~~~~g~~~~~-----------------~----~~ 69 (128)
T 1pdn_C 17 PLPNNIRL--KIVEM-A-ADGIRPCVISRQL--RVSHGCVSKILNRYQETGSIRPG-----------------V----IG 69 (128)
T ss_dssp CCCHHHHH--HHHHH-H-HTTCCHHHHHHHH--TCCHHHHHHHHHHHHHHCCSSCC-----------------C----CS
T ss_pred cCCHHHHH--HHHHH-H-HcCCCHHHHHHHH--CcCHHHHHHHHHHHHhhCCcccc-----------------c----CC
Confidence 46776653 23333 2 2578899999999 99999999999999876643210 0 01
Q ss_pred CccccCCcCCHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCc--ceecCHHHHHHHHH
Q 025493 113 GAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAF--KVDLTKQQIEEIVR 172 (252)
Q Consensus 113 G~wy~d~e~D~efV~~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~--~~~Ls~~di~~IL~ 172 (252)
|. ....++.++. ..+..++......|+.+|+..+.+.|+. ...+|..-|..+|.
T Consensus 70 g~--~~~~l~~~~~----~~i~~~~~~~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~ 125 (128)
T 1pdn_C 70 GS--KPRIATPEIE----NRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVR 125 (128)
T ss_dssp CC--CCCSSCSTHH----HHHHHTTTTCTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC-
T ss_pred CC--CCCcCCHHHH----HHHHHHHHhCcchHHHHHHHHHHHcCCccccCCcCHHHHHHHHH
Confidence 10 0112333333 3444555666678999999999877652 11467777777664
No 243
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=78.76 E-value=1.6 Score=32.31 Aligned_cols=32 Identities=13% Similarity=0.366 Sum_probs=30.3
Q ss_pred cHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeee
Q 025493 55 WTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEV 88 (252)
Q Consensus 55 w~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~v 88 (252)
..++|..+. ++..+.|.++|+.|+..|+|...
T Consensus 37 s~~eLa~~~--~vSr~tvr~al~~L~~~Gli~~~ 68 (102)
T 1v4r_A 37 SVADIRAQF--GVAAKTVSRALAVLKSEGLVSSR 68 (102)
T ss_dssp CHHHHHHHS--SSCTTHHHHHTTTTTTSSCCEEE
T ss_pred CHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEe
Confidence 689999999 99999999999999999999875
No 244
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=78.62 E-value=25 Score=32.36 Aligned_cols=147 Identities=13% Similarity=0.072 Sum_probs=93.2
Q ss_pred CCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHh----c-CC-eeeee-----cccc--------
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQN----K-SL-IKEVV-----NIHN-------- 93 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~----k-~l-IK~vk-----sv~~-------- 93 (252)
..|..+..|+-+..+ .++..+.-.+|...| +|+...|.|+|.+|-. | ++ +|.=+ .|..
T Consensus 196 ~vs~~Qa~ILllFn~-~~~~~lt~~ei~~~t--~i~~~~L~r~L~sL~~~~k~k~~iL~~~~~~~~~~~~~~~d~f~~N~ 272 (382)
T 3dpl_C 196 EVTTFQLAVLFAWNQ-RPREKISFENLKLAT--ELPDAELRRTLWSLVAFPKLKRQVLLYEPQVNSPKDFTEGTLFSVNQ 272 (382)
T ss_dssp EEEHHHHHHHGGGTT-CTTCCEEHHHHHHHH--CCCHHHHHHHHHHHHCCTTCSSCSEEESSCCSSGGGCCTTCEEEECT
T ss_pred EEcHHHHHHHHHhcc-CCCCcCcHHHHHHHH--CcCHHHHHHHHHHHhcccchhcceeeecCCccccCcCCCCCEEEEcC
Confidence 467788888877766 666788899999999 9999999999999964 2 34 44311 1110
Q ss_pred -----CC----e--eeEEecccccCCCccCCccccCCcCCHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceec
Q 025493 94 -----KG----K--KHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDL 162 (252)
Q Consensus 94 -----~~----r--K~YmL~~lePs~eiTGG~wy~d~e~D~efV~~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~L 162 (252)
++ + |+-+...++...+...- =+..+.+.+=...|..+|.+.+..+...+-+++..-+.+.=-.+...
T Consensus 273 ~F~~~k~~k~~~r~ki~~~~~~q~~~~~e~~--~~~~~v~edR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p 350 (382)
T 3dpl_C 273 EFSLIKNAKVQKRGKINLIGRLQLTTERMRE--EENEGIVQLRILRTQEAIIQIMKMRKKISNAQLQTELVEILKNMFLP 350 (382)
T ss_dssp TCCEESSSSEESEEEEECCTTTTSCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSSEECHHHHHHHHHHHTTTTCCC
T ss_pred CCcCCcccccceeEEEecccccccccchhhh--hhHHHHHHHhhheeeEEEehhhhccCcccHHHHHHHHHHHHHhcCCC
Confidence 00 1 22222111000000000 00111222233456667788888888888888877776553346778
Q ss_pred CHHHHHHHHHHHhhcCeeEEEe
Q 025493 163 TKQQIEEIVRAVVLDNQIMEVK 184 (252)
Q Consensus 163 s~~di~~IL~tLVyDgkIE~v~ 184 (252)
+..+|.+-|+.|+--+-|++..
T Consensus 351 ~~~~IKk~Ie~LIereYleR~~ 372 (382)
T 3dpl_C 351 QKKMIKEQIEWLIEHKYIRRDE 372 (382)
T ss_dssp CHHHHHHHHHHHHHTTSEEEET
T ss_pred CHHHHHHHHHHHHhhhhhccCC
Confidence 8999999999999999999864
No 245
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=78.46 E-value=2.8 Score=32.84 Aligned_cols=32 Identities=6% Similarity=0.076 Sum_probs=30.2
Q ss_pred cHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeee
Q 025493 55 WTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEV 88 (252)
Q Consensus 55 w~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~v 88 (252)
..++|..+. ++..+.|.++|+.|+..|+|...
T Consensus 30 se~~La~~~--gvSr~tVr~Al~~L~~~Gli~~~ 61 (129)
T 2ek5_A 30 STNELAAFH--RINPATARNGLTLLVEAGILYKK 61 (129)
T ss_dssp CHHHHHHHT--TCCHHHHHHHHHHHHTTTSEEEE
T ss_pred CHHHHHHHH--CcCHHHHHHHHHHHHHCCcEEEe
Confidence 688999999 99999999999999999999875
No 246
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=78.39 E-value=3.2 Score=28.79 Aligned_cols=47 Identities=4% Similarity=0.155 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhhC-CCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEE
Q 025493 128 VVKSQCLKQIIKL-KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIME 182 (252)
Q Consensus 128 ~l~~~~~~~i~~~-~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~ 182 (252)
..++.++.+|... ...|..||++.+ .++...|.++|++|.-+|.|+.
T Consensus 10 ~~~~~IL~~L~~~~~~~s~~eLA~~l--------glsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 10 NLEQKILQVLSDDGGPVAIFQLVKKC--------QVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp HHHHHHHHHHHHHCSCEEHHHHHHHH--------CSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCcEec
Confidence 4577788888765 578999998765 3678999999999999999876
No 247
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=78.12 E-value=6.5 Score=29.39 Aligned_cols=44 Identities=16% Similarity=0.256 Sum_probs=37.7
Q ss_pred CCCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHh
Q 025493 31 SDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQN 81 (252)
Q Consensus 31 ~~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~ 81 (252)
...||+.|+.|+.++.+ |...++|...+ ++..++|...++.+..
T Consensus 32 ~~~Lt~re~~Vl~l~~~-----G~s~~EIA~~L--~iS~~TV~~~l~ri~~ 75 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAE-----GFLVTEIAKKL--NRSIKTISSQKKSAMM 75 (99)
T ss_dssp SSSCCHHHHHHHHHHHH-----TCCHHHHHHHH--TSCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHc-----CCCHHHHHHHH--CcCHHHHHHHHHHHHH
Confidence 56799999999999765 88999999999 9999998887776644
No 248
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=77.43 E-value=4.8 Score=29.21 Aligned_cols=61 Identities=11% Similarity=0.237 Sum_probs=46.7
Q ss_pred CCChH-HHHHHHHHHhhcCCCcccHHHHHHHhhcCCChH-HHHHHHHHHHhcCCeeeeeccccCCeeeEEecc
Q 025493 33 SLTDH-ERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDN-IVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVE 103 (252)
Q Consensus 33 ~l~~~-e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~-~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~~ 103 (252)
.|++. |..||+++++ +|.... -.|.+.+ +|-.. +|+..|=+|++++|+.- ..+.++|.+|.
T Consensus 6 qls~~~ee~I~~fL~~-~Gp~~A--L~IAK~L--GlktAK~VNp~LY~m~~~~lL~~-----Dek~~~W~iy~ 68 (72)
T 3eyi_A 6 QFSQQREEDIYRFLKD-NGPQRA--LVIAQAL--GMRTAKDVNRDLYRMKSRHLLDM-----DEQSKAWTIYR 68 (72)
T ss_dssp CCSSHHHHHHHHHHHH-HCSEEH--HHHHHHT--TCCSGGGTHHHHHHHHHTTSEEE-----CTTTCEEEEC-
T ss_pred hhhhhhHHHHHHHHHH-cCCchH--HHHHHHh--CcchhhhcCHHHHHHHHccCcCC-----CCCCCceeEEE
Confidence 46654 7899999999 776653 4688889 88766 59999999999999933 33567777765
No 249
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=77.42 E-value=2.8 Score=36.23 Aligned_cols=47 Identities=11% Similarity=0.205 Sum_probs=39.1
Q ss_pred HHHHHHHhhc-CCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeee
Q 025493 40 LIYDVIRSNK-QDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEV 88 (252)
Q Consensus 40 ~vy~~I~~~a-g~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~v 88 (252)
..+++++..+ .+.++-..+|-.++ +|+...+.|+|++|+..|+|...
T Consensus 24 r~l~iL~~l~~~~~~~~~~eia~~~--gl~kstv~r~l~tL~~~G~v~~~ 71 (260)
T 2o0y_A 24 RVIDLLELFDAAHPTRSLKELVEGT--KLPKTTVVRLVATMCARSVLTSR 71 (260)
T ss_dssp HHHHHHTTCBTTBSSBCHHHHHHHH--CCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHhhCCCCcCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEC
Confidence 3455665533 25689999999999 99999999999999999999874
No 250
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=77.21 E-value=0.48 Score=46.54 Aligned_cols=63 Identities=11% Similarity=0.095 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEeccccc
Q 025493 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEP 106 (252)
Q Consensus 36 ~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~~leP 106 (252)
..+.+|+.++++ -| .|.++||..-+ ++...++.++|+.|+.+|+|+.+- ...--.|.+.+||-
T Consensus 516 ~~~~~I~~~l~~-~g--~it~~di~~l~--~ls~~qa~~~L~~Lv~~G~l~~~G---~gr~t~Y~~~~~~~ 578 (583)
T 3lmm_A 516 ELTNAAMLWLSE-VG--DLATSDLMAMC--GVSRGTAKACVDGLVDEERVVAVG---GGRSRRYRLVELEH 578 (583)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHH-cC--CcCHHHHHHHH--CCCHHHHHHHHHHHHHCCcEEEeC---CCCceEEEEeeccc
Confidence 346789999998 44 49999999999 999999999999999999998753 33445677777763
No 251
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=76.88 E-value=3.5 Score=34.05 Aligned_cols=61 Identities=7% Similarity=0.061 Sum_probs=44.1
Q ss_pred CCChHHHHHHHHHHh--hcC---C------C-cccHHHHHHHhhcCCCh-HHHHHHHHHHHhcCCeeeeeccccCCeeeE
Q 025493 33 SLTDHERLIYDVIRS--NKQ---D------M-GIWTRDMKRELKVNLPD-NIVTKSIKSLQNKSLIKEVVNIHNKGKKHL 99 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~--~ag---~------~-GIw~~dik~~~~~~l~~-~~l~k~lK~Le~k~lIK~vksv~~~~rK~Y 99 (252)
..+.++++..-+++- ..| . - .+.+++|..-+ |++. ..|+|+|+.|+++|+|+.- ++++.
T Consensus 137 ~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~~~t~~~lA~~l--G~sr~etvsR~l~~l~~~glI~~~------~~~i~ 208 (238)
T 2bgc_A 137 INGKLGSICSQLLILTYVYGKETPDGIKITLDNLTMQELGYSS--GIAHSSAVSRIISKLKQEKVIVYK------NSCFY 208 (238)
T ss_dssp TTHHHHHHHHHHHHHHHHHEEEETTEEEECCSCCCHHHHHHHT--TCCCHHHHHHHHHHHHHTTSEEEE------TTEEE
T ss_pred ccCHHHHHHHHHHHHHHHhCCCCCCceEEEeccCCHHHHHHHh--CCChHHHHHHHHHHHHHCCCEEec------CCEEE
Confidence 345677666655442 022 1 2 57789999999 9999 6999999999999999863 45666
Q ss_pred Ee
Q 025493 100 MA 101 (252)
Q Consensus 100 mL 101 (252)
++
T Consensus 209 I~ 210 (238)
T 2bgc_A 209 VQ 210 (238)
T ss_dssp ES
T ss_pred Ee
Confidence 65
No 252
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=76.38 E-value=6.8 Score=27.82 Aligned_cols=48 Identities=6% Similarity=0.138 Sum_probs=40.2
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 130 KSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 130 ~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
+..++.+|...+..|..+|++.+ .++..-|..+|+.|+-.|.|++...
T Consensus 22 ~~~il~~l~~~~~~s~~ela~~l--------~is~~tv~~~l~~L~~~glv~~~~~ 69 (109)
T 1sfx_A 22 DVRIYSLLLERGGMRVSEIAREL--------DLSARFVRDRLKVLLKRGFVRREIV 69 (109)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEEEee
Confidence 45577777777789999999887 3688999999999999999998764
No 253
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=76.38 E-value=3.3 Score=31.39 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=30.1
Q ss_pred cHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeee
Q 025493 55 WTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEV 88 (252)
Q Consensus 55 w~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~v 88 (252)
..++|..+. ++..+.|.++|+.|+..|+|...
T Consensus 35 s~~~La~~~--~vSr~tvr~al~~L~~~Gli~~~ 66 (113)
T 3tqn_A 35 SIRKISTEY--QINPLTVSKAYQSLLDDNVIEKR 66 (113)
T ss_dssp CHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEe
Confidence 678999999 99999999999999999999875
No 254
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=76.28 E-value=6.2 Score=34.27 Aligned_cols=71 Identities=14% Similarity=0.149 Sum_probs=45.0
Q ss_pred CCCCChHHHHHHHHHHhh--cCCCcccH-------HHHHHHhhcCCC---hHHHHHHHHHHHhcCCeeeeeccccCCeee
Q 025493 31 SDSLTDHERLIYDVIRSN--KQDMGIWT-------RDMKRELKVNLP---DNIVTKSIKSLQNKSLIKEVVNIHNKGKKH 98 (252)
Q Consensus 31 ~~~l~~~e~~vy~~I~~~--ag~~GIw~-------~dik~~~~~~l~---~~~l~k~lK~Le~k~lIK~vksv~~~~rK~ 98 (252)
+.+|+..++.|+..|... .|+..+-. +++...+ +.. .+.+.+.|+.|+..|+|..... ....+..
T Consensus 281 ~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~--g~~~~~~~~~~~~l~~L~~~gli~~~~~-~~~~~g~ 357 (386)
T 2qby_A 281 ILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKL--GVEAVTQRRVSDIINELDMVGILTAKVV-NRGRYGK 357 (386)
T ss_dssp HHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHH--TCCCCCHHHHHHHHHHHHHHTSEEEEEC-CCTTSCC
T ss_pred HHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhc--CCCCCCHHHHHHHHHHHHhCCCEEEEee-cCCCCCC
Confidence 357888999998888741 24443446 4556666 544 4899999999999999987543 1112334
Q ss_pred EEeccc
Q 025493 99 LMAVEF 104 (252)
Q Consensus 99 YmL~~l 104 (252)
|..+.|
T Consensus 358 y~~~~l 363 (386)
T 2qby_A 358 TKEIGL 363 (386)
T ss_dssp CEEEEE
T ss_pred eEEEEe
Confidence 555444
No 255
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=76.27 E-value=9.5 Score=25.71 Aligned_cols=47 Identities=6% Similarity=0.063 Sum_probs=38.5
Q ss_pred CCCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHH
Q 025493 31 SDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSL 79 (252)
Q Consensus 31 ~~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~L 79 (252)
+..|++.|+.|+.+..-..|-.|...++|...+ |++...|.+.+...
T Consensus 3 l~~L~~~er~il~l~~~l~~~~g~s~~eIA~~l--gis~~tV~~~~~ra 49 (68)
T 2p7v_B 3 LAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQF--DVTRERIRQIEAKA 49 (68)
T ss_dssp SCCCCHHHHHHHHHHTTTTSSSCCCHHHHHHHH--TCCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHccCCCCCCCHHHHHHHH--CcCHHHHHHHHHHH
Confidence 567999999999887632446899999999999 99999888776654
No 256
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=75.39 E-value=9.1 Score=33.22 Aligned_cols=60 Identities=15% Similarity=0.120 Sum_probs=48.3
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeE
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHL 99 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~Y 99 (252)
..|+.-...++.+|.- +..|.+.+|.+.. |+.. +++++.|..+|||+++..-..++..+|
T Consensus 96 ~~Ls~aaLEtLaiIAy---~QPITR~eI~~ir--Gv~~---~~~v~~Lle~gLI~e~Gr~~~~Gp~ly 155 (219)
T 2z99_A 96 TKLTRAALETLAVVAY---RQPVTRARVSAVR--GVNV---DAVMRTLLARGLITEVGTDADTGAVTF 155 (219)
T ss_dssp CCCCHHHHHHHHHHHH---HCSEEHHHHHHHH--TSCC---HHHHHHHHHTTSEEEEEECTTTCCEEE
T ss_pred CccCHHHHHHHHHHHH---cCCcCHHHHHHHH--CCCH---HHHHHHHHHCCCEEEccccCCCCCeEE
Confidence 4688888889999988 4799999999999 7765 789999999999999864444443333
No 257
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=75.10 E-value=0.074 Score=48.81 Aligned_cols=60 Identities=22% Similarity=0.246 Sum_probs=48.9
Q ss_pred CCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEe
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMA 101 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL 101 (252)
+|++.|..+|..+-+ .| ..-..+|.+.+ +++++.+.++|+.|+++|||...++ ..+.|..
T Consensus 15 Gls~~ea~vY~~Ll~-~g--~~t~~eia~~~--gv~~~~Vy~~L~~L~~~GlV~~~~g----~p~~y~a 74 (342)
T 3qph_A 15 GFTKYEILTYWTLLV-YG--PSTAKEISTKS--GIPYNRVYDTISSLKLRGFVTEIEG----TPKVYAA 74 (342)
T ss_dssp HHHHHTTSCSHHHHH-HH--HHHHSCCSSST--TSSSCSCCHHHHHHHHHTSEEEECC----TTCEEEE
T ss_pred CCCHHHHHHHHHHHH-cC--CCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEEcC----ceeEEEE
Confidence 678888899988877 55 35568899999 9999999999999999999998632 3455665
No 258
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=75.02 E-value=3.4 Score=36.03 Aligned_cols=138 Identities=15% Similarity=0.188 Sum_probs=79.6
Q ss_pred CChHHHHHHHHHHhhcCCCcccHHHHHHHh-------hcCCC----hHHHHHHHHHHHhcCC-eeeeeccccCCeeeEEe
Q 025493 34 LTDHERLIYDVIRSNKQDMGIWTRDMKREL-------KVNLP----DNIVTKSIKSLQNKSL-IKEVVNIHNKGKKHLMA 101 (252)
Q Consensus 34 l~~~e~~vy~~I~~~ag~~GIw~~dik~~~-------~~~l~----~~~l~k~lK~Le~k~l-IK~vksv~~~~rK~YmL 101 (252)
+++-.|..+|.|-+ -|- +--.++++-. ++... ...|+.+=++|..-++ |+.+++ ...++.+|.+
T Consensus 3 y~d~hR~fLQa~ms-rg~--l~~~~~~~l~~~~~~~~~~~~~~~~l~~~I~~IN~~L~~l~~~Ir~~~~-q~~g~~~y~l 78 (238)
T 3nw0_A 3 MTDVHRRFLQLLMT-HGV--LEEWDVKRLQTHCYKVHDRNATVDKLEDFINNINSVLESLYIEIKRGVT-EDDGRPIYAL 78 (238)
T ss_dssp CCHHHHHHHHHHHH-SSE--EEHHHHHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHGGGTEEEEEEEC-TTTCCEEEEE
T ss_pred cchHHHHHHHHHHc-CCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHhhhcCcEEEEeec-CCCCCEEEEE
Confidence 56666777777766 444 2223332211 00111 1233334344444333 444443 3367999999
Q ss_pred cccccCCCccCCccccCCcCCHHHHHHHHHHHHHHhhh-CCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCee
Q 025493 102 VEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIK-LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQI 180 (252)
Q Consensus 102 ~~lePs~eiTGG~wy~d~e~D~efV~~l~~~~~~~i~~-~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkI 180 (252)
.++.+++..-=++=|+.. -|+-++..+-..+.. .+..+.-++.+-.. .+....|+..+.+++|+.||-||=+
T Consensus 79 VN~~~d~~~klaT~yt~~-----Ei~~fk~lle~i~~s~~~~~s~~~~lnl~~--~~~~k~l~~~eae~lL~~lv~~gWl 151 (238)
T 3nw0_A 79 VNLATTSISKMATDFAEN-----ELDLFRKALELIIDSETGFASSTNILNLVD--QLKGKKMRKKEAEQVLQKFVQNKWL 151 (238)
T ss_dssp EESSSCTTHHHHTTSCHH-----HHHHHHHHHHHHHHSSSSCEEHHHHHGGGT--TCSSSCCCHHHHHHHHHHHHHTTSE
T ss_pred EeCCCCHHHhhccCCCHH-----HHHHHHHHHHHHHhCCCCceeHHHHHHHHh--hcccCCCCHHHHHHHHHHHHHhcch
Confidence 999998776555545444 445555555555543 44555545443322 2233679999999999999999999
Q ss_pred EE
Q 025493 181 ME 182 (252)
Q Consensus 181 E~ 182 (252)
.+
T Consensus 152 ~~ 153 (238)
T 3nw0_A 152 IE 153 (238)
T ss_dssp EE
T ss_pred hh
Confidence 86
No 259
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=75.00 E-value=3.8 Score=28.67 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=34.4
Q ss_pred CCCCCHHHHHHHHHHcC-Cc-------ceecCHHHHHHHHHHHhhcCeeE
Q 025493 140 LKVATLEGISDSIKRSG-AF-------KVDLTKQQIEEIVRAVVLDNQIM 181 (252)
Q Consensus 140 ~~~~T~~~I~~~i~~~~-i~-------~~~Ls~~di~~IL~tLVyDgkIE 181 (252)
+...|-+++.+||+++| |. +-..+.++|..+|+.|.--|.|.
T Consensus 7 ~~~~~e~~lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 7 HHMITERELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp SCCCCHHHHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred hhhccHHHHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 35688999999999987 22 24578999999999999999874
No 260
>1bm9_A RTP, TER, replication terminator protein; DNA-binding protein, contrahelicase; 2.00A {Bacillus subtilis} SCOP: a.4.5.7 PDB: 1f4k_A 1j0r_A 2dpd_A 2dpu_A 2efw_A* 2dqr_A
Probab=74.84 E-value=16 Score=28.97 Aligned_cols=66 Identities=9% Similarity=0.094 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHhhcCCCcccHHH-HHHH---hhcCCChHHHHHHHHHHHhcCCeeeeecc-ccCC---eeeEEec
Q 025493 36 DHERLIYDVIRSNKQDMGIWTRD-MKRE---LKVNLPDNIVTKSIKSLQNKSLIKEVVNI-HNKG---KKHLMAV 102 (252)
Q Consensus 36 ~~e~~vy~~I~~~ag~~GIw~~d-ik~~---~~~~l~~~~l~k~lK~Le~k~lIK~vksv-~~~~---rK~YmL~ 102 (252)
--...|+.++.+ ----|-|..+ |+.+ -+.++++..|=.+|..||.+|++++.... ..+. ||+|-+.
T Consensus 18 fl~l~IL~ll~~-~p~YGYeI~~~L~e~~~~~~~~is~gtlYp~L~rLe~~Gll~~~~~~~~g~~r~~rkyY~lT 91 (122)
T 1bm9_A 18 FLKLYMITMTEQ-ERLYGLKLLEVLRSEFKEIGFKPNHTEVYRSLHELLDDGILKQIKVKKEGAKLQEVVLYQFK 91 (122)
T ss_dssp HHHHHHHHHHHT-TCCBSTTHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHTTSEEEEEEECTTSTTCEEEEEEES
T ss_pred HHHHHHHHHHcc-CCchHHHHHHHHHHhhccCcccCCcccHHHHHHHHHHCCCeEEEEeecCCCCCCceeEEEEC
Confidence 346677888877 7777888654 4433 22289999999999999999999998874 2333 3887663
No 261
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=74.02 E-value=6.5 Score=32.22 Aligned_cols=46 Identities=13% Similarity=0.250 Sum_probs=39.3
Q ss_pred HHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCC-eee
Q 025493 38 ERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSL-IKE 87 (252)
Q Consensus 38 e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~l-IK~ 87 (252)
...|+.++.+ .+ ..+..++|..++ ++..++|.+-|+.|+..|+ |..
T Consensus 23 ~~~Il~~L~~-~~-~~~s~~eLa~~l--~vS~~Ti~rdi~~L~~~G~~I~~ 69 (187)
T 1j5y_A 23 LKSIVRILER-SK-EPVSGAQLAEEL--SVSRQVIVQDIAYLRSLGYNIVA 69 (187)
T ss_dssp HHHHHHHHHH-CS-SCBCHHHHHHHH--TSCHHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHHHHHHH-cC-CCcCHHHHHHHH--CcCHHHHHHHHHHHHHCCCeEEE
Confidence 4567777776 43 359999999999 9999999999999999999 866
No 262
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=73.99 E-value=6.4 Score=32.04 Aligned_cols=72 Identities=13% Similarity=0.021 Sum_probs=49.9
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeCCCCCcccccCCcceeecccC
Q 025493 129 VKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSK 206 (252)
Q Consensus 129 l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~g~~~f~~~~~g~~~YR~~~~ 206 (252)
|+..++..|.. +..+.-||.+.+....-....++...|...|+.|+-+|.|+....... .++.++.|+++..
T Consensus 3 l~~~iL~lL~~-~~~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~GlI~~~~~~~~-----~~~~r~~Y~lT~~ 74 (179)
T 1yg2_A 3 LPHVILTVLST-RDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVLEPQE-----GKPDRKVYSITQA 74 (179)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECCC--------------CEEECHH
T ss_pred hHHHHHHHHhc-CCCCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCCCeEEEeecCC-----CCCCceEEEeChH
Confidence 55677888875 689999999999765333357999999999999999999997643211 1234677877643
No 263
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=73.42 E-value=2.5 Score=36.01 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=31.8
Q ss_pred CCChHHHHHHHHHHHhcCCeeeeecc--ccCCeeeEEecc
Q 025493 66 NLPDNIVTKSIKSLQNKSLIKEVVNI--HNKGKKHLMAVE 103 (252)
Q Consensus 66 ~l~~~~l~k~lK~Le~k~lIK~vksv--~~~~rK~YmL~~ 103 (252)
++...+|-.+|+.||+.|||.+.... ..|.||+|-+.+
T Consensus 68 ~~s~g~lY~~L~rLe~~GlI~~~~~~~~~~p~rk~Y~iT~ 107 (204)
T 3l9f_A 68 DGTYGMIYPTLRKLEKDGKITKEVVIQDGRPNKNIYAITE 107 (204)
T ss_dssp ECCTTCHHHHHHHHHHTTSEEEEEECCTTSCCEEEEEECH
T ss_pred CCCcchHHHHHHHHHHCCCeEEEeeccCCCCCceEEEECh
Confidence 58899999999999999999986543 345799999876
No 264
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=73.17 E-value=11 Score=28.61 Aligned_cols=72 Identities=8% Similarity=0.011 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCH-HHHHHHHHHHhhcCeeEEEeeCCCCCcccccCCcceeeccc
Q 025493 127 KVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTK-QQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVS 205 (252)
Q Consensus 127 ~~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~-~di~~IL~tLVyDgkIE~v~~~g~~~f~~~~~g~~~YR~~~ 205 (252)
..++-.++..|.. +..+.-+|.+.|.+.|.....++. ..+-.+|+.|+-+|.|++...... ...+..|+++.
T Consensus 12 ~~~~~~IL~~L~~-~~~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~GlI~~~~~~~~------~~~r~~Y~LT~ 84 (118)
T 2esh_A 12 WWLASTILLLVAE-KPSHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTEWDTTV------SPPRKIYRITP 84 (118)
T ss_dssp HHHHHHHHHHHHH-SCBCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEEEECSS------SSCEEEEEECH
T ss_pred chHHHHHHHHHHc-CCCCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCCCeEEEeecCC------CCCceEEEECh
Confidence 3456667777865 678999999999886643334788 899999999999999998764211 12356787664
No 265
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=73.03 E-value=13 Score=35.40 Aligned_cols=129 Identities=16% Similarity=0.299 Sum_probs=0.0
Q ss_pred hhccCCCcccccCCCCCCCCCCCChHH----HHHHHHHHhhcCCCcccHHHHHH---HhhcCCChHHHHHHHHHHHhcCC
Q 025493 12 GLAKGSGMSKRKRPDSNAPSDSLTDHE----RLIYDVIRSNKQDMGIWTRDMKR---ELKVNLPDNIVTKSIKSLQNKSL 84 (252)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~l~~~e----~~vy~~I~~~ag~~GIw~~dik~---~~~~~l~~~~l~k~lK~Le~k~l 84 (252)
+...++...+.+...-......|++|| +.+++.++. -|+-=|...+|+. .++.+++..++.++++.+-..+
T Consensus 274 nFp~~GPVMKKKTl~wePs~E~Lt~EEI~ELREaF~~fDk-DgdG~IS~eELk~aLrsLG~~~TeeEI~~Lf~~~D~Dg- 351 (440)
T 3u0k_A 274 NFPSNGAVMQKKTKGWEPTRDQLTEEQIAEFKEAFSLFDK-DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG- 351 (440)
T ss_dssp CCCTTSTTTTTCEEEECCBCBCCCHHHHHHHHHHHHHHCT-TCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSC-
T ss_pred CCCCCCCccchhhhhhHhhHhhhhHHHHHHHHHHHHHHcC-CCCCEECHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCC-
Q ss_pred eeeeeccccCCeeeEEecccccCCCccCCccccCCcCC-HHHHHHHHHHHHHHhh--------------hCCCCCHHHHH
Q 025493 85 IKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLD-TEFIKVVKSQCLKQII--------------KLKVATLEGIS 149 (252)
Q Consensus 85 IK~vksv~~~~rK~YmL~~lePs~eiTGG~wy~d~e~D-~efV~~l~~~~~~~i~--------------~~~~~T~~~I~ 149 (252)
|+.+| .||+..+.......-. ..++.|.+|+.
T Consensus 352 ---------------------------------DG~IdFeEFl~lms~~lk~~d~eeeLreAFk~fDkDgdG~IS~eELr 398 (440)
T 3u0k_A 352 ---------------------------------DGTIDFPEFLIMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELR 398 (440)
T ss_dssp ---------------------------------SSSEEHHHHHHHHHTC------CHHHHHHHHHHCTTCSSEECHHHHH
T ss_pred ---------------------------------CCcCcHHHHHHHHHHHhcCCChHHHHHHHHHHHCCCCcCcCCHHHHH
Q ss_pred HHHHHcCCcceecCHHHHHHHHHHHhhcC
Q 025493 150 DSIKRSGAFKVDLTKQQIEEIVRAVVLDN 178 (252)
Q Consensus 150 ~~i~~~~i~~~~Ls~~di~~IL~tLVyDg 178 (252)
+.+++.| ..|+.++++.+++.+=.|+
T Consensus 399 ~vL~~lG---e~LSdeEIdeLfke~D~Dg 424 (440)
T 3u0k_A 399 HVMTNLG---EKLTDEEVDEMIREADIDG 424 (440)
T ss_dssp HHHHHHT---CCCCHHHHHHHHHHHCTTC
T ss_pred HHHHHhC---CCCCHHHHHHHHHHhCCCC
No 266
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=72.93 E-value=4.2 Score=29.29 Aligned_cols=47 Identities=15% Similarity=0.202 Sum_probs=39.0
Q ss_pred CCCCCCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHh
Q 025493 28 NAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQN 81 (252)
Q Consensus 28 ~~~~~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~ 81 (252)
...+..|++.|+.|+.++.+ |...++|...+ +++.++|.+.++.+-.
T Consensus 24 ~~~l~~Lt~~e~~vl~l~~~-----g~s~~eIA~~l--~is~~tV~~~l~r~~~ 70 (91)
T 2rnj_A 24 AELYEMLTEREMEILLLIAK-----GYSNQEIASAS--HITIKTVKTHVSNILS 70 (91)
T ss_dssp -CTGGGCCSHHHHHHHHHHT-----TCCTTHHHHHH--TCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHc-----CCCHHHHHHHH--CcCHHHHHHHHHHHHH
Confidence 44567899999999999643 89999999999 9999999888877644
No 267
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=72.47 E-value=5.8 Score=32.23 Aligned_cols=57 Identities=12% Similarity=0.133 Sum_probs=39.4
Q ss_pred cCCHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEe
Q 025493 120 SLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVK 184 (252)
Q Consensus 120 e~D~efV~~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~ 184 (252)
.+.+.|--.|+-.++--......+|.++|++.+. ++..-+++|+..|.-.|.|+.++
T Consensus 6 kis~k~~yAlr~l~~La~~~~~~~s~~~IA~~~~--------is~~~l~kil~~L~~aGlv~s~r 62 (162)
T 3k69_A 6 NMKLDFSVAVHSILYLDAHRDSKVASRELAQSLH--------LNPVMIRNILSVLHKHGYLTGTV 62 (162)
T ss_dssp -CTHHHHHHHHHHHHHHTTTTSCBCHHHHHHHHT--------SCGGGTHHHHHHHHHTTSSEEEC
T ss_pred cccHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHC--------cCHHHHHHHHHHHHHCCCEEeec
Confidence 4455555555543332222345789999998653 66788999999999999998776
No 268
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=72.34 E-value=12 Score=28.96 Aligned_cols=66 Identities=14% Similarity=0.198 Sum_probs=50.1
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeCCCCCcccccCCcceeeccc
Q 025493 129 VKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVS 205 (252)
Q Consensus 129 l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~g~~~f~~~~~g~~~YR~~~ 205 (252)
+.-.++..|. +..+--+|.+.|.+.+ ..++...|-.+|+.|+-+|.|+....... .+.++.|+++.
T Consensus 22 l~~~IL~lL~--~p~~GYei~~~l~~~~---~~is~gtlY~~L~rLe~~GlI~~~~~~~~------~~~rk~Y~LT~ 87 (123)
T 3ri2_A 22 LVMLVLSQLR--EPAYGYALVKSLADHG---IPIEANTLYPLMRRLESQGLLASEWDNGG------SKPRKYYRTTD 87 (123)
T ss_dssp HHHHHHHHTT--SCEEHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHTTSEEEEEEECS------SCEEEEEEECH
T ss_pred HHHHHHHHHc--CCCCHHHHHHHHHHhC---CCCCcchHHHHHHHHHHCCCEEEEeccCC------CCCceEEEECH
Confidence 3444556665 6788899999999886 78999999999999999999997653211 13467788764
No 269
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=71.53 E-value=3.1 Score=31.37 Aligned_cols=50 Identities=14% Similarity=0.234 Sum_probs=41.6
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 132 QCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 132 ~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
.++.+|...+.+|..||++.+... ..++..-|..+|+.|+-.|.|++.+.
T Consensus 39 ~VL~~L~~~~~~t~~eL~~~l~~~----~~~s~sTVt~~L~rLe~KGlV~R~~~ 88 (99)
T 2k4b_A 39 IVMRVIWSLGEARVDEIYAQIPQE----LEWSLATVKTLLGRLVKKEMLSTEKE 88 (99)
T ss_dssp HHHHHHHHHSCEEHHHHHHTCCGG----GCCCHHHHHHHHHHHHHTTSCEEEEE
T ss_pred HHHHHHHhCCCCCHHHHHHHHhcc----cCCCHhhHHHHHHHHHHCCCEEEEeC
Confidence 466777777889999999988642 35788999999999999999999864
No 270
>1qb5_D Protein (heat labIle enterotoxin type IIB B- pentamer); 1.90A {Escherichia coli} SCOP: b.40.2.1 PDB: 1qcb_D 1tii_D
Probab=71.31 E-value=2.9 Score=31.25 Aligned_cols=37 Identities=19% Similarity=0.342 Sum_probs=27.1
Q ss_pred cCCeeeeeccccCCeeeEEecccccCCCccCCccccCC--cCCHHH
Q 025493 82 KSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEG--SLDTEF 125 (252)
Q Consensus 82 k~lIK~vksv~~~~rK~YmL~~lePs~eiTGG~wy~d~--e~D~ef 125 (252)
-.|-|-+..|++.++-+|... -|||.||-.+ ++-..|
T Consensus 21 v~l~kyi~din~nt~g~yvvs-------~tggvw~i~~~~dypdn~ 59 (99)
T 1qb5_D 21 VELTKYISDINNNTDGMYVVS-------STGGVWRISRAKDYPDNV 59 (99)
T ss_dssp ECEEEEEEECSTTTCEEEEEE-------TTSCEEEECCCSSTTHHH
T ss_pred hhhhhhhhhccCCCccEEEEe-------cCCcEEEecCCCCCChhh
Confidence 345677778999999999874 4899999543 454444
No 271
>4fp5_D LT-IIB, heat-labIle enterotoxin IIB, B chain; B pentamer LT-IIB S74A mutant; 1.40A {Escherichia coli} PDB: 1qb5_D 1qcb_D 1tii_D 4fnf_D 4fo2_D
Probab=71.04 E-value=2.8 Score=31.29 Aligned_cols=36 Identities=19% Similarity=0.367 Sum_probs=26.4
Q ss_pred CCeeeeeccccCCeeeEEecccccCCCccCCccccCC--cCCHHH
Q 025493 83 SLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEG--SLDTEF 125 (252)
Q Consensus 83 ~lIK~vksv~~~~rK~YmL~~lePs~eiTGG~wy~d~--e~D~ef 125 (252)
.|-|-+..|++.++-+|... -|||.||-.+ ++-..|
T Consensus 22 ~l~kyi~din~nt~g~yvvs-------~tggvw~i~~~~dypdn~ 59 (98)
T 4fp5_D 22 ELTKYISDINNNTDGMYVVS-------STGGVWRISRAKDYPDNV 59 (98)
T ss_dssp EEEEEEEECSTTTCEEEEEE-------TTCCEEEECCCSSTTHHH
T ss_pred hhhhhhhhccCCCccEEEEe-------cCCcEEEecCCCCCChhh
Confidence 45566778899999999874 4999999543 444444
No 272
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=70.46 E-value=11 Score=26.66 Aligned_cols=53 Identities=15% Similarity=0.213 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 125 FIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 125 fV~~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
+-+..+-.++.+|...+..|..+|++.+ .++..-|...|+.|+-.|.|++...
T Consensus 13 l~~~~~~~iL~~L~~~~~~~~~ela~~l--------~is~~tvs~~l~~L~~~gli~~~~~ 65 (100)
T 1ub9_A 13 LGNPVRLGIMIFLLPRRKAPFSQIQKVL--------DLTPGNLDSHIRVLERNGLVKTYKV 65 (100)
T ss_dssp HHSHHHHHHHHHHHHHSEEEHHHHHHHT--------TCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCChHHHHHHHHHHhcCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEEec
Confidence 3345566788888777788999999876 3678889999999999999997663
No 273
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=70.43 E-value=25 Score=26.72 Aligned_cols=75 Identities=13% Similarity=0.135 Sum_probs=52.7
Q ss_pred HHHHH-HHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeCCCCCcccccCCccee
Q 025493 123 TEFIK-VVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCY 201 (252)
Q Consensus 123 ~efV~-~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~g~~~f~~~~~g~~~Y 201 (252)
.++.. .|.-.++..|.. +..+--+|.+.|.+.|. ..++..-|-.+|+.|+-+|.|+....... ..+.++.|
T Consensus 5 ~~l~~g~l~~~IL~lL~~-~p~~Gyei~~~l~~~g~--~~is~gtlY~~L~rLe~~GlI~~~~~~~~-----~g~~rk~Y 76 (117)
T 4esf_A 5 TEMLKGSLEGCVLEIISR-RETYGYEITRHLNDLGF--TEVVEGTVYTILVRLEKKKLVNIEKKPSD-----MGPPRKFY 76 (117)
T ss_dssp HHHHHHHHHHHHHHHHHH-SCBCHHHHHHHHHHHTC--TTCCHHHHHHHHHHHHHTTCEEEEEEC----------CEEEE
T ss_pred HHHHHChHHHHHHHHHHc-CCCCHHHHHHHHHHcCC--CCCCccHHHHHHHHHHHCCCEEEEeecCC-----CCCCceEE
Confidence 34443 345556666664 67889999999998863 46899999999999999999998653210 01346778
Q ss_pred eccc
Q 025493 202 KNVS 205 (252)
Q Consensus 202 R~~~ 205 (252)
+++.
T Consensus 77 ~LT~ 80 (117)
T 4esf_A 77 SLNE 80 (117)
T ss_dssp EECH
T ss_pred EECH
Confidence 8764
No 274
>4asn_A TUBR; transcription, tubulin, FTSZ, segregation, partition; 3.50A {Bacillus megaterium}
Probab=70.38 E-value=16 Score=27.40 Aligned_cols=65 Identities=17% Similarity=0.162 Sum_probs=54.5
Q ss_pred CCCCChHHHHHHHHHHhhcCC----CcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEE
Q 025493 31 SDSLTDHERLIYDVIRSNKQD----MGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLM 100 (252)
Q Consensus 31 ~~~l~~~e~~vy~~I~~~ag~----~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~Ym 100 (252)
+++|+-++.-|+..+.+ .|. +.|....|+... ......+.|.|-.||.-.+||-|..-+ .-|+|+
T Consensus 9 ~~~L~~~D~SIL~~L~~-~~A~~~~KAI~K~~I~D~i--E~~TA~~RKsL~rLEAi~FI~~V~G~r--~HK~~L 77 (101)
T 4asn_A 9 MRKLTIEDVSILGWLFQ-NEANAVFKAIKKSSIADEL--EYSTANFRKTLNKLEAIHFIGTVTGGK--EHKLYL 77 (101)
T ss_dssp HHTCCHHHHHHHHHHHH-TTCCSGGGCEEHHHHHTTS--CCCSHHHHHHHHHHHHTTCEEEECSSS--SCEEEE
T ss_pred HHhCChhHHHHHHHHHh-cCccceeeeecHhhHHHHH--HHhHHHHHHHHHHHHHHHHhhhcccCc--cceeeh
Confidence 45788899999999988 554 578889999988 888899999999999999999997654 467764
No 275
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=70.21 E-value=23 Score=27.72 Aligned_cols=96 Identities=13% Similarity=0.154 Sum_probs=62.0
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeCCCCCcccccCCcceeecccCCC---
Q 025493 132 QCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGG--- 208 (252)
Q Consensus 132 ~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~g~~~f~~~~~g~~~YR~~~~~~--- 208 (252)
.++..|. .+..+..||.+.+ | ++..-+-+.|+.|+-+|.|++..... .. +..|+++....
T Consensus 28 ~IL~~L~-~g~~~~~eLa~~l---g-----is~~tls~~L~~Le~~GlI~r~~~~~-------d~-~~~y~LT~~G~~l~ 90 (146)
T 2f2e_A 28 LIVRDAF-EGLTRFGEFQKSL---G-----LAKNILAARLRNLVEHGVMVAVPAES-------GS-HQEYRLTDKGRALF 90 (146)
T ss_dssp HHHHHHH-TTCCSHHHHHHHH---C-----CCHHHHHHHHHHHHHTTSEEEEECSS-------SS-CEEEEECHHHHTTH
T ss_pred HHHHHHH-hCCCCHHHHHHHh---C-----CCHHHHHHHHHHHHHCCCEEEEecCC-------CC-eEEEEECchHHHHH
Confidence 3555664 5778999998876 4 56778889999999999999876432 12 45677654311
Q ss_pred --------------CCCCCCCCCcccCCCCCCCcc--ccCCC-CCccCcccccc
Q 025493 209 --------------GGGEPKTGSSASVPCGVCPQI--NFCTP-DGVISPKTCVY 245 (252)
Q Consensus 209 --------------~~~~~~~~~l~~vPCg~CPv~--~~C~~-gG~IsP~tC~Y 245 (252)
.........+...+||. |+- -.|.. |.+|+|....+
T Consensus 91 ~~l~~l~~w~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~g~~~~~~~~~~ 143 (146)
T 2f2e_A 91 PLLVAIRQWGEDYFFAPDESHVRLVERDSGQ-PVPRLQVRAGDGSPLAAEDTRV 143 (146)
T ss_dssp HHHHHHHHHHHHHSSCTTCCCCEEEETTTCC-BCCCCCCBCTTSCBCCGGGEEE
T ss_pred HHHHHHHHHHHHhhccccCCcceeeeCCCCC-CCCceEEECCCcCCCCHHHeee
Confidence 00111133478889984 443 44654 56788887554
No 276
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=69.83 E-value=15 Score=24.23 Aligned_cols=44 Identities=14% Similarity=0.122 Sum_probs=36.3
Q ss_pred CCCCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHH
Q 025493 30 PSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSL 79 (252)
Q Consensus 30 ~~~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~L 79 (252)
.+..|++.|+.|+.+..- .|...++|...+ |++.+.|.+.++..
T Consensus 12 ~l~~L~~~~r~il~l~~~----~g~s~~eIA~~l--gis~~tv~~~~~ra 55 (70)
T 2o8x_A 12 MIADLTTDQREALLLTQL----LGLSYADAAAVC--GCPVGTIRSRVARA 55 (70)
T ss_dssp TTTSSCHHHHHHHHHHHT----SCCCHHHHHHHH--TSCHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHH----cCCCHHHHHHHH--CcCHHHHHHHHHHH
Confidence 467899999999987655 468999999999 99999887766654
No 277
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=69.59 E-value=32 Score=25.54 Aligned_cols=117 Identities=12% Similarity=0.158 Sum_probs=65.6
Q ss_pred CCCCCCChHH----HHHHHHHHhhcCCCcccHHHHHHHh---hcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEe
Q 025493 29 APSDSLTDHE----RLIYDVIRSNKQDMGIWTRDMKREL---KVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMA 101 (252)
Q Consensus 29 ~~~~~l~~~e----~~vy~~I~~~ag~~GIw~~dik~~~---~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL 101 (252)
.....|++++ +.+++.+.. .|+.-|...+++.-. |.+++...+...++.. .|.|---.=+. ++
T Consensus 5 ~~~~~l~~~~~~~l~~~F~~~D~-d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~--~g~i~~~eF~~-------~~ 74 (153)
T 2ovk_B 5 PRRVKLSQRQMQELKEAFTMIDQ-DRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKEC--PGQLNFTAFLT-------LF 74 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCC-STTTCCCHHHHHHHTTTTTSCCCHHHHHHHHHHS--SSCCCSHHHHH-------TT
T ss_pred cccCCCCHHHHHHHHHHHHHhCC-CCCCeECHHHHHHHHHHhCCCCCHHHHHHHHHHc--CCCCCHHHHHH-------HH
Confidence 3455678765 345566666 777789999998864 2246667777776654 11110000000 00
Q ss_pred cccccCCCccCCccccCCcCCHHHHHHHHHHHHHHhh--hCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHH
Q 025493 102 VEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQII--KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAV 174 (252)
Q Consensus 102 ~~lePs~eiTGG~wy~d~e~D~efV~~l~~~~~~~i~--~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tL 174 (252)
....+ ...-. +.++. +++.+. ..|++|.+|+...++..| ..++.++++.+++.+
T Consensus 75 ~~~~~-----------~~~~~----~~l~~-~F~~~D~d~~G~I~~~el~~~l~~~g---~~~~~~~~~~~~~~~ 130 (153)
T 2ovk_B 75 GEKVS-----------GTDPE----DALRN-AFSMFDEDGQGFIPEDYLKDLLENMG---DNFSKEEIKNVWKDA 130 (153)
T ss_dssp TTTTT-----------TCCCT----THHHH-HHHTTCSSCSSCCCHHHHHHHHHHSS---SCCCHHHHHHHHHHC
T ss_pred HHHhc-----------cCChH----HHHHH-HHHHHCCCCCCeEcHHHHHHHHHHcC---CCCCHHHHHHHHHHc
Confidence 00000 00000 11222 223332 468999999999999987 468999999998865
No 278
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=69.40 E-value=12 Score=26.39 Aligned_cols=49 Identities=8% Similarity=0.005 Sum_probs=39.9
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEe
Q 025493 128 VVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVK 184 (252)
Q Consensus 128 ~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~ 184 (252)
..+..++.+|...+..|..||++.+ | ++..-|...|+.|+-.|.|++.+
T Consensus 24 ~~~~~il~~l~~~~~~s~~ela~~l---~-----is~~tvs~~l~~L~~~glv~~~~ 72 (99)
T 3cuo_A 24 PKRLLILCMLSGSPGTSAGELTRIT---G-----LSASATSQHLARMRDEGLIDSQR 72 (99)
T ss_dssp HHHHHHHHHHTTCCSEEHHHHHHHH---C-----CCHHHHHHHHHHHHHTTSEEEEE
T ss_pred hHHHHHHHHHHhCCCcCHHHHHHHH---C-----cCHHHHHHHHHHHHHCCCEEEEe
Confidence 3455677778777788999998876 2 67889999999999999999875
No 279
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=68.67 E-value=3.3 Score=34.29 Aligned_cols=55 Identities=15% Similarity=0.136 Sum_probs=45.8
Q ss_pred CChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCe
Q 025493 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGK 96 (252)
Q Consensus 34 l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~r 96 (252)
||.-...++.+|.- +..|.+.+|.+.. |+. ++++++.|..+|||+++..-..++|
T Consensus 92 LS~aaLEtLaiIay---~qPiTR~eI~~ir--Gv~---~~~~v~~L~e~glI~e~g~~~~~GR 146 (162)
T 1t6s_A 92 LSRSMLEVLAVVAW---HQPVTKGEIQQIR--GAS---PDYSIDRLLARGLIEVRGRADSPGR 146 (162)
T ss_dssp HHHHHHHHHHHHHH---HCSEEHHHHHHHH--TCC---CCSHHHHHHHTTSEEEEEECSSTTC
T ss_pred cCHHHHHHHHHHHH---cCCcCHHHHHHHH--CCC---HHHHHHHHHHCCCEEEccccCCCCC
Confidence 55555669999987 5799999999999 777 7889999999999999876555676
No 280
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=68.54 E-value=8.8 Score=28.43 Aligned_cols=52 Identities=17% Similarity=0.192 Sum_probs=43.3
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 130 KSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 130 ~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
...++.+|...+.+|..+|++.+... ..++..-|..+|+.|+-.|.|++...
T Consensus 12 ~~~vL~~l~~~~~~t~~ela~~l~~~----~~~s~~tv~~~l~~L~~~Glv~r~~~ 63 (123)
T 1okr_A 12 EWEVMNIIWMKKYASANNIIEEIQMQ----KDWSPKTIRTLITRLYKKGFIDRKKD 63 (123)
T ss_dssp HHHHHHHHHHHSSEEHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHTSEEEEEE
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHhcc----CCCcHhhHHHHHHHHHHCCCeEEEec
Confidence 34577777777899999999999753 23788999999999999999999865
No 281
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=66.91 E-value=5.8 Score=37.15 Aligned_cols=51 Identities=12% Similarity=0.120 Sum_probs=45.2
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeee
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEV 88 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~v 88 (252)
..|+++|..||+.+. ...+-..+|-.++ +++..++..+|-.||=+|+|+++
T Consensus 324 ~~l~~~~~~vl~~l~----~~~~~~D~l~~~~--gl~~~~v~~~L~~LEl~G~v~~~ 374 (382)
T 3maj_A 324 EPDTGDRTRILALLG----PSPVGIDDLIRLS--GISPAVVRTILLELELAGRLERH 374 (382)
T ss_dssp CCCTTHHHHHHHHCC----SSCEEHHHHHHHH--CCCHHHHHHHHHHHHHTTCCEEC
T ss_pred CCCChHHHHHHHhhC----CCCCCHHHHHHHH--CcCHHHHHHHHHHHHhCCcEEeC
Confidence 358889999998763 3578899999999 99999999999999999999986
No 282
>2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus}
Probab=66.87 E-value=16 Score=29.73 Aligned_cols=95 Identities=4% Similarity=-0.033 Sum_probs=56.5
Q ss_pred cCCCcccHHHHHHHhhc----CCChHHHHHHHHHHHhcCCeeeeec-cccCCeeeEEecccccCCC-----ccCCcc---
Q 025493 49 KQDMGIWTRDMKRELKV----NLPDNIVTKSIKSLQNKSLIKEVVN-IHNKGKKHLMAVEFEPSKD-----ISGGAW--- 115 (252)
Q Consensus 49 ag~~GIw~~dik~~~~~----~l~~~~l~k~lK~Le~k~lIK~vks-v~~~~rK~YmL~~lePs~e-----iTGG~w--- 115 (252)
.||+++....|+..++. .+....+...++.|.+.|+-..++- .....+++.+.+.++|-.. ++|..=
T Consensus 13 ~G~~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~L~~~Gyf~~~~v~~~~~~~~~~l~~~v~eg~~i~~i~~~G~~~~~~ 92 (235)
T 2x8x_X 13 EGATPELEQLVYQVISTRPGSTTTRTQLQQDTNAIFATGFFADVNAVPRDTPLGVRITFVVRPYPVLRAVQVAGNQVLTQ 92 (235)
T ss_dssp ESCCHHHHHHHHHHCCCCTTCEECHHHHHHHHHHHHTTSCEEEEEEEEEEETTEEEEEEEEEECCBCCEEEEESCSSSCH
T ss_pred ECCCccCHHHHHHhhccCCCCccCHHHHHHHHHHHHHCCCcEEEEEEEecCCCcEEEEEEEEecceEEEEEEECCccCCH
Confidence 57777777777766522 2577899999999999998332221 1111345677777777542 333321
Q ss_pred ---------ccCCcCCHHHHHHHHHHHHHHhhhCCCC
Q 025493 116 ---------YSEGSLDTEFIKVVKSQCLKQIIKLKVA 143 (252)
Q Consensus 116 ---------y~d~e~D~efV~~l~~~~~~~i~~~~~~ 143 (252)
+....|+...++..++.+.+++.++||+
T Consensus 93 ~~l~~~~~~~~G~~~~~~~l~~~~~~i~~~y~~~GY~ 129 (235)
T 2x8x_X 93 EKVNEIFAPQIGRTLNLRELQAGIEKINTFYRDNGYI 129 (235)
T ss_dssp HHHHHHHGGGTTSBCCHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHhCccCCCCcCHHHHHHHHHHHHHHHHhCCCe
Confidence 1233555555666665565555555554
No 283
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=66.43 E-value=15 Score=27.26 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=43.8
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 130 KSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 130 ~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
.-.++.+|..++..|..||++.+... -.++..-|-.+|+.|+-.|.|++.+.
T Consensus 12 q~~vL~~L~~~~~~t~~el~~~l~~~----~~~~~~Tvt~~l~rLe~kGlv~R~~~ 63 (126)
T 1sd4_A 12 EWDVMNIIWDKKSVSANEIVVEIQKY----KEVSDKTIRTLITRLYKKEIIKRYKS 63 (126)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHTT----SCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHhhc----CCCChhhHHHHHHHHHHCCceEEEeC
Confidence 45678888888899999999999743 24678899999999999999999874
No 284
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=66.24 E-value=13 Score=29.52 Aligned_cols=71 Identities=11% Similarity=0.039 Sum_probs=51.6
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeCCCCCcccccCCcceeeccc
Q 025493 129 VKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVS 205 (252)
Q Consensus 129 l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~g~~~f~~~~~g~~~YR~~~ 205 (252)
++-.++..|.. +..+.-||.+.|.+.......++..-|-.+|+.|+-+|.|++...... ....++.|+++.
T Consensus 42 ~~~~IL~~L~~-~~~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~~~~~~-----~~~~rk~Y~LT~ 112 (145)
T 1xma_A 42 VDTIILSLLIE-GDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYYGEET-----QGKRRTYYRITP 112 (145)
T ss_dssp HHHHHHHHHHH-CCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEEEEEC-------CEEEEEEECH
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEEEeccC-----CCCCeEEEEECH
Confidence 45677777765 678899999999876433457899999999999999999998753210 012356787664
No 285
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=66.13 E-value=7.2 Score=31.70 Aligned_cols=35 Identities=17% Similarity=0.418 Sum_probs=31.9
Q ss_pred CCCcccHHHHHHHhhcC--------------CChHHHHHHHHHHHhcCCeeee
Q 025493 50 QDMGIWTRDMKRELKVN--------------LPDNIVTKSIKSLQNKSLIKEV 88 (252)
Q Consensus 50 g~~GIw~~dik~~~~~~--------------l~~~~l~k~lK~Le~k~lIK~v 88 (252)
|.-|. ++|.... + ...+.|.++|+.||..|||...
T Consensus 66 g~~G~--~~La~~~--gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~ 114 (150)
T 2v7f_A 66 GPVGI--ERLRTYY--GGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKV 114 (150)
T ss_dssp CSBCH--HHHHHHH--CC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCH--HHHHHHH--CCCccCCcCCccccccchHHHHHHHHHHHHCCCEEEe
Confidence 56776 9999999 8 9999999999999999999875
No 286
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=66.12 E-value=15 Score=27.08 Aligned_cols=60 Identities=18% Similarity=0.116 Sum_probs=44.6
Q ss_pred HHHHHHhhh--CCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeCCCCCcccccCCcceeeccc
Q 025493 131 SQCLKQIIK--LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVS 205 (252)
Q Consensus 131 ~~~~~~i~~--~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~g~~~f~~~~~g~~~YR~~~ 205 (252)
..++.+|.. ...+|..||.+.+ .|+...|-.+|+.|+-.|.|.++++... ..++.|.+..
T Consensus 23 ~~Vl~~I~~~g~~gi~qkeLa~~~--------~l~~~tvt~iLk~LE~kglIkr~~~~~~-------~~rKvy~Ly~ 84 (91)
T 2dk5_A 23 KLVYQIIEDAGNKGIWSRDVRYKS--------NLPLTEINKILKNLESKKLIKAVKSVAA-------SKKKVYMLYN 84 (91)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHT--------TCCHHHHHHHHHHHHHTTSEEEECCSSC-------SSCCEEEESS
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEEecCCCC-------CCcEEEEEec
Confidence 467777776 3477777777643 4788899999999999999999986541 3467777643
No 287
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=65.64 E-value=16 Score=26.98 Aligned_cols=49 Identities=14% Similarity=0.177 Sum_probs=39.9
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeC
Q 025493 130 KSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSN 186 (252)
Q Consensus 130 ~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~ 186 (252)
.-.++.+|..++..|..+|++.+ .++..-|..+|+.|+-.|.|++....
T Consensus 31 ~~~iL~~l~~~~~~~~~ela~~l--------~~s~~tvs~~l~~L~~~glv~~~~~~ 79 (138)
T 3bpv_A 31 QVACLLRIHREPGIKQDELATFF--------HVDKGTIARTLRRLEESGFIEREQDP 79 (138)
T ss_dssp HHHHHHHHHHSTTCBHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEeecCC
Confidence 34566777777888999999887 36788999999999999999987643
No 288
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=64.62 E-value=15 Score=30.97 Aligned_cols=72 Identities=19% Similarity=0.080 Sum_probs=54.0
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeCCCCCcccccCCcceeecccC
Q 025493 129 VKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSK 206 (252)
Q Consensus 129 l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~g~~~f~~~~~g~~~YR~~~~ 206 (252)
++..|+..|. .+..+--||.+.|.+..-.-..++...|...|+.|+-+|.|+.......+ ++.++.|+++..
T Consensus 37 ~r~~IL~lL~-~~p~~GYeL~~~l~~~~~~~~~~s~g~lY~~L~rLe~~GlI~~~~~~~~~-----~p~rk~Y~iT~~ 108 (204)
T 3l9f_A 37 GKDIILGILS-KKERSGYEINDILQNQLSYFYDGTYGMIYPTLRKLEKDGKITKEVVIQDG-----RPNKNIYAITES 108 (204)
T ss_dssp HHHHHHHHTS-SCCEEHHHHHHHHHHTSTTTEECCTTCHHHHHHHHHHTTSEEEEEECCTT-----SCCEEEEEECHH
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHHHHhCCccCCCcchHHHHHHHHHHCCCeEEEeeccCC-----CCCceEEEEChH
Confidence 4567788776 56789999999999874334678999999999999999999876532111 234678987753
No 289
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=64.60 E-value=14 Score=26.97 Aligned_cols=48 Identities=13% Similarity=0.183 Sum_probs=38.0
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 129 VKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 129 l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
.+..++.+| ..+..|+.||++.+ .++..-|...|+.|+-.|.|++.+.
T Consensus 22 ~r~~IL~~L-~~~~~~~~ela~~l--------~is~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 22 TRWEILTEL-GRADQSASSLATRL--------PVSRQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp HHHHHHHHH-HHSCBCHHHHHHHS--------SSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHH-HcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeeEEec
Confidence 345577777 55668888888765 4788999999999999999998654
No 290
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=64.29 E-value=17 Score=28.07 Aligned_cols=49 Identities=16% Similarity=0.194 Sum_probs=42.6
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEe
Q 025493 128 VVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVK 184 (252)
Q Consensus 128 ~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~ 184 (252)
.+...++..|+..+..|..||++.+. +|..-+.+.|+.|+-.|.|.+..
T Consensus 5 ~~d~~il~~L~~~~~~s~~ela~~lg--------~s~~tv~~~l~~L~~~G~i~~~~ 53 (144)
T 2cfx_A 5 QIDLNIIEELKKDSRLSMRELGRKIK--------LSPPSVTERVRQLESFGIIKQYT 53 (144)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHT--------CCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC--------cCHHHHHHHHHHHHHCCCeEEEe
Confidence 45668888999889999999998763 78999999999999999999765
No 291
>1xb4_A VPS25, hypothetical 23.6 kDa protein in YUH1-URA8 intergenic region; winged helix, unknown function; 3.10A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_B 1u5t_C
Probab=64.07 E-value=13 Score=31.87 Aligned_cols=70 Identities=13% Similarity=0.158 Sum_probs=49.0
Q ss_pred CCCCCChHHHHHHHHHHhhcCCCc--ccHHHHHHHh---h--c-CCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEE
Q 025493 30 PSDSLTDHERLIYDVIRSNKQDMG--IWTRDMKREL---K--V-NLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLM 100 (252)
Q Consensus 30 ~~~~l~~~e~~vy~~I~~~ag~~G--Iw~~dik~~~---~--~-~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~Ym 100 (252)
.-+.+.+=-.+||+-|++ .|..| +..-+|..-- + - ||+...+.|+|+.|+++|-..-+++=.+.+-|.++
T Consensus 124 ~Wrtp~EWa~~I~~Wv~~-tG~~~sV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~GKaqi~~~~~~~GVKF~~ 201 (202)
T 1xb4_A 124 LWKSLDSWASLILQWFED-SGKLNQVITLYELSEGDETVNWEFHRMPESLLYYCLKPLCDRNRATMLKDENDKVIAIKV 201 (202)
T ss_dssp CSSCHHHHHHHHHHHHHT-TSCTTSCEEHHHHC--CCSCCSTTTTCCHHHHHHHHHHHHGGGCCEEEECTTSCEEEEEC
T ss_pred EeCCHHHHHHHHHHHHHh-cCCcCcEEEeehcccCCCCCCccccCCCHHHHHHHHHHHHHcCCEEEeecCCCCeEEEEe
Confidence 344556667899999999 88664 3344666631 0 0 79999999999999999987777654445666654
No 292
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=64.03 E-value=15 Score=29.37 Aligned_cols=46 Identities=13% Similarity=0.116 Sum_probs=39.8
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcC---CChHHHHHHHHHHH
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVN---LPDNIVTKSIKSLQ 80 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~---l~~~~l~k~lK~Le 80 (252)
..||+-|+.|+.++.+ ..++++..++|-.++ + +..++|...++.|-
T Consensus 144 ~~Lt~rE~~vl~~l~~-~~~~~~s~~~Ia~~l--~~~~~s~~tv~~~i~~l~ 192 (220)
T 1p2f_A 144 IHLPKKEFEILLFLAE-NAGKVVTREKLLETF--WEDPVSPRVVDTVIKRIR 192 (220)
T ss_dssp CCCCHHHHHHHHHHHH-TTTSCEEHHHHHHHH--CSSCCCTHHHHHHHHHHH
T ss_pred EecCHHHHHHHHHHHH-CCCceEcHHHHHHHH--hCCCCCcchHHHHHHHHH
Confidence 4599999999999999 778899999999999 8 88888877766663
No 293
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=63.87 E-value=8.1 Score=29.73 Aligned_cols=56 Identities=11% Similarity=0.179 Sum_probs=40.3
Q ss_pred HHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEecccccC
Q 025493 40 LIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPS 107 (252)
Q Consensus 40 ~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~~lePs 107 (252)
.|+..+++ .|.. |+ .... ++++.....+|+.|...|+|+-|.-... -+.++++.|.
T Consensus 9 kIL~~L~~-~~~~--is---~e~l--~Ise~~~~~il~~L~d~GyI~Gv~~~~~----~~~i~~~~~~ 64 (102)
T 2hgc_A 9 AILKEIFE-GNTP--LS---ENDI--GVTEDQFDDAVNFLKREGYIIGVHYSDD----RPHLYKLGPE 64 (102)
T ss_dssp HHHHHHHH-HCSC--CC---HHHH--TSCHHHHHHHHHHHHHHTSEECCEESSS----SEECCSSCCE
T ss_pred HHHHHHHh-CCCc--CC---HHhc--CCCHHHHHHHHHHHHHCCCccceEEEeC----cceeeccCce
Confidence 34555666 5543 43 2556 8999999999999999999999865544 4677766644
No 294
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=63.75 E-value=52 Score=25.90 Aligned_cols=120 Identities=12% Similarity=0.182 Sum_probs=66.6
Q ss_pred CCCChHH----HHHHHHHHhhcCCCcccHHHHHHH---hhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEeccc
Q 025493 32 DSLTDHE----RLIYDVIRSNKQDMGIWTRDMKRE---LKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEF 104 (252)
Q Consensus 32 ~~l~~~e----~~vy~~I~~~ag~~GIw~~dik~~---~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~~l 104 (252)
.+||++| +.+++.+.. -|+--|-..+++.- +|.+++...+.+.++.+-..+ .+.--|- ++
T Consensus 3 ~~Lt~eqi~elk~~F~~~D~-d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~~~~d~d~----------~~~i~~~--ef 69 (176)
T 2lhi_A 3 SNLTEEQIAEFKEAFALFDK-DNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDG----------NHQIEFS--EF 69 (176)
T ss_dssp CCCCTTGGGHHHHHHHTTCS-SCSSCBCHHHHHHHHHHHTCCCCHHHHHHHHTTTCSSC----------SSSBCTT--HH
T ss_pred CcCCHHHHHHHHHHHHHHCC-CCCCCCCHHHHHHHHHHcCCChhHHHHHHHHHHhCcCC----------CccchHH--HH
Confidence 4677766 457778888 78888888888764 333555566665554332111 0000000 00
Q ss_pred ccCCCccCCccccCCcCCHHHHHHHHHHHHHH-hhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHh
Q 025493 105 EPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQ-IIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVV 175 (252)
Q Consensus 105 ePs~eiTGG~wy~d~e~D~efV~~l~~~~~~~-i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLV 175 (252)
+ .++....-...--+.|+++.-.| ....|+.|.+|+...+...| ..++.++++.+++..-
T Consensus 70 -----~---~~~~~~~~~~~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g---~~~~~~ei~~l~~~~d 130 (176)
T 2lhi_A 70 -----L---ALMSRQLKSNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIG---EKLTDAEVDDMLREVS 130 (176)
T ss_dssp -----H---HHHTSSCCSSHHHHHHHHHHHHHCSSCSSSBCHHHHHHHHHTTT---CCCCHHHHHHHHHHHH
T ss_pred -----H---HHHHHhcccCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcC---cccchHHHHHHHHhhc
Confidence 0 00000000111113343333323 13568999999999999887 4789999999998764
No 295
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=63.72 E-value=45 Score=25.16 Aligned_cols=72 Identities=8% Similarity=0.015 Sum_probs=51.3
Q ss_pred HHHH-HHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeCCCCCcccccCCcceeecccC
Q 025493 129 VKSQ-CLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSK 206 (252)
Q Consensus 129 l~~~-~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~g~~~f~~~~~g~~~YR~~~~ 206 (252)
+.-. |+..|.. +..+--+|.+.|.+.. ....++...|-.+|+.|+-+|.|+.......+ ....++.|+++..
T Consensus 22 l~~~~IL~lL~~-~~~~Gyei~~~l~~~~-~~~~is~gtLY~~L~rLe~~GlI~~~~~~~~~----~~~~rk~Y~LT~~ 94 (115)
T 2dql_A 22 VAICYILYVLLQ-GESYGTELIQQLETEH-PTYRLSDTVLYSAIKFLEDNRAITGYWKKLEG----RGRPRRMYQVSPE 94 (115)
T ss_dssp HHHHHHHHHHTT-SCBCHHHHHHHHHHHC-TTEECCHHHHHHHHHHHHHTTSEEEEEECCTT----CSSCEEEEEECGG
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHc-CCCCCCcchHHHHHHHHHHCCCEEEEeeecCC----CCCCcEEEEECHH
Confidence 3434 5666654 5778899999998764 35689999999999999999999976532100 0134678887654
No 296
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=63.52 E-value=20 Score=31.54 Aligned_cols=76 Identities=13% Similarity=0.021 Sum_probs=47.0
Q ss_pred CCCCCCChHHHHHHHHHHhhc--CCCcccHHH-------HH-HHhhc-CCChHHHHHHHHHHHhcCCeeeeeccccCCee
Q 025493 29 APSDSLTDHERLIYDVIRSNK--QDMGIWTRD-------MK-RELKV-NLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKK 97 (252)
Q Consensus 29 ~~~~~l~~~e~~vy~~I~~~a--g~~GIw~~d-------ik-~~~~~-~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK 97 (252)
..+..|++.++.++..|.... |+..+-..+ +. ..++. .+....+.+.|..|+..|||..... ....+.
T Consensus 301 ~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~-~~~~~g 379 (412)
T 1w5s_A 301 HELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAKPS-GRGMRG 379 (412)
T ss_dssp CSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEECC-------
T ss_pred HHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEeecc-cCCCCC
Confidence 345789999999998876512 455554443 44 55511 2567899999999999999987532 111234
Q ss_pred eEEecccc
Q 025493 98 HLMAVEFE 105 (252)
Q Consensus 98 ~YmL~~le 105 (252)
.|.++.|.
T Consensus 380 ~~~~~~l~ 387 (412)
T 1w5s_A 380 RTTLFRLA 387 (412)
T ss_dssp -CCEEEEC
T ss_pred ceeEEEeC
Confidence 46565554
No 297
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=62.87 E-value=9.9 Score=25.99 Aligned_cols=44 Identities=14% Similarity=0.308 Sum_probs=36.7
Q ss_pred CCCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHh
Q 025493 31 SDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQN 81 (252)
Q Consensus 31 ~~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~ 81 (252)
+..|++.|+.|+.++ . .|...++|...+ |++...|.+.++..-.
T Consensus 14 l~~L~~~e~~vl~l~-~----~g~s~~eIA~~l--~is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 14 LQTLSERERQVLSAV-V----AGLPNKSIAYDL--DISPRTVEVHRANVMA 57 (79)
T ss_dssp HHHHCHHHHHHHHHH-T----TTCCHHHHHHHT--TSCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHH-H----cCCCHHHHHHHH--CcCHHHHHHHHHHHHH
Confidence 346899999999886 3 588999999999 9999999988877644
No 298
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=62.20 E-value=22 Score=27.57 Aligned_cols=51 Identities=12% Similarity=0.141 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 127 KVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 127 ~~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
+.....++..|+..+..|..||++.+ .+|..-+.+.|+.|+-.|.|++...
T Consensus 6 d~~~~~iL~~L~~~~~~s~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~~~ 56 (150)
T 2w25_A 6 DDIDRILVRELAADGRATLSELATRA--------GLSVSAVQSRVRRLESRGVVQGYSA 56 (150)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEEEe
Confidence 34567888899988999999999876 3788999999999999999988764
No 299
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=62.12 E-value=11 Score=32.16 Aligned_cols=40 Identities=8% Similarity=0.152 Sum_probs=34.2
Q ss_pred cHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEe
Q 025493 55 WTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMA 101 (252)
Q Consensus 55 w~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL 101 (252)
.-++|..+. |+...+|.++|+.|++.|+|... +++-.|+.
T Consensus 35 se~~La~~~--~vSr~tvr~Al~~L~~~G~i~~~-----~g~G~~V~ 74 (236)
T 3edp_A 35 NETALQEIY--SSSRTTIRRAVDLLVEEGLVVRK-----NGVGLYVQ 74 (236)
T ss_dssp CHHHHHHHT--TCCHHHHHHHHHHHHHTTSEEEE-----TTTEEEEC
T ss_pred CHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEE-----CCceEEEc
Confidence 578999999 99999999999999999999886 34555554
No 300
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=61.88 E-value=24 Score=25.00 Aligned_cols=47 Identities=6% Similarity=0.020 Sum_probs=38.2
Q ss_pred CCCCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHH
Q 025493 30 PSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKS 78 (252)
Q Consensus 30 ~~~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~ 78 (252)
.+..|++.|+.|+.+..-..|+.|...++|...+ |++...|.+.+..
T Consensus 15 ~l~~L~~~er~vl~l~~~l~~~~~~s~~EIA~~l--gis~~tV~~~~~r 61 (87)
T 1tty_A 15 VLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYF--NVTRERIRQIEVK 61 (87)
T ss_dssp HHTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHH--TCCHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHccCCCCCCCHHHHHHHH--CCCHHHHHHHHHH
Confidence 4567999999999887732677899999999999 9998877665543
No 301
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=60.87 E-value=18 Score=32.78 Aligned_cols=53 Identities=15% Similarity=0.249 Sum_probs=44.2
Q ss_pred CChHHHHHHH-----HHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeee
Q 025493 34 LTDHERLIYD-----VIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVV 89 (252)
Q Consensus 34 l~~~e~~vy~-----~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vk 89 (252)
+++-++.|++ +|+. .| -+-.++|.++.+.++...+|.+-|+.||+.|+|+++-
T Consensus 15 l~eR~~~IL~~i~~~yl~~-~~--pV~s~~La~~~~l~VS~aTIRrDL~~LE~~GlL~r~H 72 (338)
T 1stz_A 15 LNDRQRKVLYCIVREYIEN-KK--PVSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIYQPH 72 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHH-CS--CBCHHHHHHHSCCCSCHHHHHHHHHHHHHTTSEECCS
T ss_pred HHHHHHHHHHHHHHHHHHc-CC--CccHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEcc
Confidence 6888889999 6777 55 4778999998744678999999999999999999853
No 302
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=60.68 E-value=8.7 Score=30.21 Aligned_cols=33 Identities=12% Similarity=0.179 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEe
Q 025493 144 TLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVK 184 (252)
Q Consensus 144 T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~ 184 (252)
|.++|++.+ .++..-+++||..|.--|.|+.++
T Consensus 25 s~~~IA~~~--------~i~~~~l~kIl~~L~~aGlv~s~r 57 (145)
T 1xd7_A 25 SSEIIADSV--------NTNPVVVRRMISLLKKADILTSRA 57 (145)
T ss_dssp CHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEECCS
T ss_pred CHHHHHHHH--------CcCHHHHHHHHHHHHHCCceEeec
Confidence 888888754 478999999999999999998765
No 303
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=60.64 E-value=6.5 Score=30.32 Aligned_cols=53 Identities=8% Similarity=0.199 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEE
Q 025493 125 FIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEV 183 (252)
Q Consensus 125 fV~~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v 183 (252)
+.+...+.|+.+|...+..|+.+|++.+ .+.+|..-|.+-|+.|+-.|.|+..
T Consensus 10 ~md~~d~~IL~~L~~~g~~s~~eLA~~l------~~giS~~aVs~rL~~Le~~GLV~~~ 62 (111)
T 3b73_A 10 WMTIWDDRILEIIHEEGNGSPKELEDRD------EIRISKSSVSRRLKKLADHDLLQPL 62 (111)
T ss_dssp TCCHHHHHHHHHHHHHSCBCHHHHHTST------TCCSCHHHHHHHHHHHHHTTSEEEC
T ss_pred hcCHHHHHHHHHHHHcCCCCHHHHHHHH------hcCCCHHHHHHHHHHHHHCCCEEec
Confidence 3456678899999988899999998733 2367899999999999999999974
No 304
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=60.63 E-value=17 Score=26.03 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=37.2
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEe
Q 025493 129 VKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVK 184 (252)
Q Consensus 129 l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~ 184 (252)
.+..++.+| .+..|+.||++.+ .++..-|.+.|+.|+-.|.|++..
T Consensus 32 ~r~~Il~~L--~~~~~~~eLa~~l--------~is~~tv~~~L~~L~~~Glv~~~~ 77 (96)
T 1y0u_A 32 VRRKILRML--DKGRSEEEIMQTL--------SLSKKQLDYHLKVLEAGFCIERVG 77 (96)
T ss_dssp HHHHHHHHH--HTTCCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHH--cCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEEC
Confidence 355677777 4668999988876 467888999999999999999764
No 305
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=60.52 E-value=12 Score=28.17 Aligned_cols=47 Identities=15% Similarity=0.103 Sum_probs=36.4
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeC
Q 025493 132 QCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSN 186 (252)
Q Consensus 132 ~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~ 186 (252)
.++.+|..++..|..+|++.+ .++..-+-.+|+.|+-.|.|++.+..
T Consensus 41 ~iL~~l~~~~~~t~~eLa~~l--------~~~~~~vs~~l~~L~~~Glv~r~~~~ 87 (143)
T 3oop_A 41 SVLEGIEANEPISQKEIALWT--------KKDTPTVNRIVDVLLRKELIVREIST 87 (143)
T ss_dssp HHHHHHHHHSSEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEC--
T ss_pred HHHHHHHHcCCcCHHHHHHHH--------CCCHhhHHHHHHHHHHCCCeeccCCC
Confidence 456666666778888888776 36788999999999999999987643
No 306
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=60.50 E-value=21 Score=28.04 Aligned_cols=51 Identities=8% Similarity=0.028 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 127 KVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 127 ~~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
+.....++..|+..+..|..||++.+ .+|..-+.+.|+.|+-.|.|++...
T Consensus 9 d~~~~~il~~L~~~~~~s~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~~~ 59 (162)
T 2p5v_A 9 DKTDIKILQVLQENGRLTNVELSERV--------ALSPSPCLRRLKQLEDAGIVRQYAA 59 (162)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEeeecc
Confidence 34566888899999999999999876 3788999999999999999997653
No 307
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=60.49 E-value=26 Score=24.94 Aligned_cols=51 Identities=4% Similarity=0.079 Sum_probs=40.5
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 131 SQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 131 ~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
-.++.+|...+..|..+|.+.+.+ ...++..-|-.+|+.|+-.|.|++...
T Consensus 11 ~~iL~~l~~~~~~~~~el~~~la~----~l~is~~tvs~~l~~Le~~gli~r~~~ 61 (99)
T 1tbx_A 11 AIVLAYLYDNEGIATYDLYKKVNA----EFPMSTATFYDAKKFLIQEGFVKERQE 61 (99)
T ss_dssp HHHHHHHTTCTTCBHHHHHHHHHT----TSCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHcCCcCHHHHHHHHHH----HcCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 357777888888999999766632 234678899999999999999998764
No 308
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=60.07 E-value=5.8 Score=30.01 Aligned_cols=49 Identities=8% Similarity=0.114 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEe
Q 025493 127 KVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVK 184 (252)
Q Consensus 127 ~~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~ 184 (252)
+..+..++.+|. .+..|+.||++.+ .++..-|.+.|+.|+-.|.|++.+
T Consensus 20 ~~~r~~IL~~L~-~~~~~~~eLa~~l--------gis~stvs~~L~~L~~~GlV~~~~ 68 (118)
T 2jsc_A 20 DPTRCRILVALL-DGVCYPGQLAAHL--------GLTRSNVSNHLSCLRGCGLVVATY 68 (118)
T ss_dssp SHHHHHHHHHHH-TTCCSTTTHHHHH--------SSCHHHHHHHHHHHTTTTSEEEEE
T ss_pred CHHHHHHHHHHH-cCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCceEEEE
Confidence 344566777776 4557777777654 367889999999999999998765
No 309
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=60.00 E-value=19 Score=27.87 Aligned_cols=47 Identities=9% Similarity=0.111 Sum_probs=37.1
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeC
Q 025493 132 QCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSN 186 (252)
Q Consensus 132 ~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~ 186 (252)
.++.+|..++..|..+|++.+. ++..-|-.+|+.|+-.|.|++....
T Consensus 50 ~iL~~l~~~~~~t~~eLa~~l~--------~~~~tvs~~l~~Le~~Glv~r~~~~ 96 (162)
T 3k0l_A 50 TALSVLAAKPNLSNAKLAERSF--------IKPQSANKILQDLLANGWIEKAPDP 96 (162)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHT--------SCGGGHHHHHHHHHHTTSEEEEECC
T ss_pred HHHHHHHHCCCCCHHHHHHHHC--------CCHHHHHHHHHHHHHCcCeEecCCC
Confidence 4556666677788888887763 5677889999999999999998753
No 310
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=60.00 E-value=31 Score=28.10 Aligned_cols=67 Identities=13% Similarity=0.071 Sum_probs=46.5
Q ss_pred HHHHHHHHhhhC--CCCCHHHHHHHHHHcCCccee-cCHHHHHHHHHHHhhcCeeEEEeeCCCCCcccccCCcceeeccc
Q 025493 129 VKSQCLKQIIKL--KVATLEGISDSIKRSGAFKVD-LTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVS 205 (252)
Q Consensus 129 l~~~~~~~i~~~--~~~T~~~I~~~i~~~~i~~~~-Ls~~di~~IL~tLVyDgkIE~v~~~g~~~f~~~~~g~~~YR~~~ 205 (252)
-+..++.+|..+ +.+|+++|.+- .. ||..-|.+-|+.|+-.|.|+++...+. .......+..|+++.
T Consensus 30 tR~~IL~~Ll~~p~~~~ta~eL~~~--------l~~lS~aTVyrhL~~L~eaGLV~~~~~~~~--~~~rGrP~k~Y~LT~ 99 (151)
T 3u1d_A 30 TRLDVLHQILAQPDGVLSVEELLYR--------NPDETEANLRYHVDELVDRGIVEKIPVPRA--KSVDDPPTTFYAVTG 99 (151)
T ss_dssp HHHHHHHHHHHSTTSCBCHHHHHHH--------CTTSCHHHHHHHHHHHHHTTSEEEEECCCC--TTSSSCCCEEEEECH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHh--------cCCCCHHHHHHHHHHHHHCCCeEEeecCcC--cccCCCCceEEEECH
Confidence 456677777665 45899999753 34 889999999999999999998864321 111122346777654
No 311
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=59.86 E-value=16 Score=30.80 Aligned_cols=45 Identities=18% Similarity=0.097 Sum_probs=39.9
Q ss_pred CCCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhc
Q 025493 31 SDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNK 82 (252)
Q Consensus 31 ~~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k 82 (252)
...||+.|+.|+.++.+ |...++|..++ ++..++|...++.+-.|
T Consensus 173 ~~~Lt~re~~vl~~~~~-----G~s~~eIa~~l--~is~~tV~~~~~~~~~k 217 (237)
T 3szt_A 173 NVRLTARETEMLKWTAV-----GKTYGEIGLIL--SIDQRTVKFHIVNAMRK 217 (237)
T ss_dssp GCCCCHHHHHHHHHHHT-----TCCHHHHHHHH--TSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc-----CCCHHHHHHHH--CCCHHHHHHHHHHHHHH
Confidence 45799999999999865 89999999999 99999999999988554
No 312
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=59.13 E-value=24 Score=25.08 Aligned_cols=46 Identities=11% Similarity=0.148 Sum_probs=37.5
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEe
Q 025493 130 KSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVK 184 (252)
Q Consensus 130 ~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~ 184 (252)
+..++.+|.. +..|+.||++.+ | ++..-|..-|+.|+-.|.|++.+
T Consensus 25 r~~Il~~L~~-~~~~~~ela~~l---~-----is~~tvs~~L~~L~~~Glv~~~~ 70 (98)
T 3jth_A 25 RLQILCMLHN-QELSVGELCAKL---Q-----LSQSALSQHLAWLRRDGLVTTRK 70 (98)
T ss_dssp HHHHHHHTTT-SCEEHHHHHHHH---T-----CCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHhc-CCCCHHHHHHHH---C-----cCHHHHHHHHHHHHHCCCeEEEE
Confidence 4457777766 788999999887 3 56788999999999999999865
No 313
>3htu_A Vacuolar protein-sorting-associated protein 25; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=58.91 E-value=11 Score=27.79 Aligned_cols=52 Identities=12% Similarity=0.254 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhcCCCc--ccHHHHHH--Hh-h--c-CCChHHHHHHHHHHHhcCCeeeeec
Q 025493 38 ERLIYDVIRSNKQDMG--IWTRDMKR--EL-K--V-NLPDNIVTKSIKSLQNKSLIKEVVN 90 (252)
Q Consensus 38 e~~vy~~I~~~ag~~G--Iw~~dik~--~~-~--~-~l~~~~l~k~lK~Le~k~lIK~vks 90 (252)
-.+||+-+++ .|..| ...-+|.. .+ + - ||+...+.|+|+.||++|-..-+++
T Consensus 11 a~~Iy~Wv~~-~G~~~sV~TlyEL~~Gd~t~~~ef~gmd~~~L~kaL~~L~k~gkA~i~~~ 70 (79)
T 3htu_A 11 GKLIYQWVSR-SGQNNSVFTLYELTNGEDTEDEEFHGLDEATLLRALQALQQEHKAEIITV 70 (79)
T ss_dssp HHHHHHHHHT-TCCSCSEECHHHHHHSSTTTTSTTTTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHHHHH-cCCCCceEEEeeeccCCCCCCCcccCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 4689999999 77765 34455655 11 1 1 8999999999999999997666654
No 314
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=58.69 E-value=10 Score=32.83 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=33.5
Q ss_pred CCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeee
Q 025493 51 DMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVV 89 (252)
Q Consensus 51 ~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vk 89 (252)
+.+.-..+|..++ |++..+|...|+.|...++|+..+
T Consensus 176 ~~~~t~~~la~~~--~l~~~~V~~~l~~L~~~~~v~~~~ 212 (232)
T 2qlz_A 176 NGRATVEELSDRL--NLKEREVREKISEMARFVPVKIIN 212 (232)
T ss_dssp SSEEEHHHHHHHH--TCCHHHHHHHHHHHTTTSCEEEET
T ss_pred cCCCCHHHHHHHh--CcCHHHHHHHHHHHHhcCCeEEec
Confidence 3577889999999 999999999999999999998654
No 315
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=58.65 E-value=21 Score=26.83 Aligned_cols=46 Identities=13% Similarity=0.201 Sum_probs=36.7
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 132 QCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 132 ~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
.++.+|...+..|..+|++.+ .++..-|..+|+.|+-.|.|++...
T Consensus 46 ~iL~~l~~~~~~t~~ela~~l--------~~~~~tvs~~l~~Le~~Glv~r~~~ 91 (150)
T 2rdp_A 46 VALQWLLEEGDLTVGELSNKM--------YLACSTTTDLVDRMERNGLVARVRD 91 (150)
T ss_dssp HHHHHHHHHCSBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHcCCCCHHHHHHHH--------CCCchhHHHHHHHHHHCCCeeecCC
Confidence 455666666778888888766 3678899999999999999998764
No 316
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=58.60 E-value=27 Score=26.41 Aligned_cols=70 Identities=13% Similarity=0.060 Sum_probs=51.4
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeCCCCCcccccCCcceeeccc
Q 025493 128 VVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVS 205 (252)
Q Consensus 128 ~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~g~~~f~~~~~g~~~YR~~~ 205 (252)
.|.-.|+..|.. +..+--+|.+.|.+.| -..++..-|-.+|+.|+-+|.|+.......+ ...++.|+++.
T Consensus 9 ~l~~~IL~~L~~-~~~~Gyei~~~l~~~~--~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~-----g~~rk~Y~LT~ 78 (115)
T 4esb_A 9 VLEGCILYIISQ-EEVYGYELSTKLNKHG--FTFVSEGSIYPLLLRMQKEKLIEGTLKASSL-----GPKRKYYHITD 78 (115)
T ss_dssp THHHHHHHHHHH-SCEEHHHHHHHHHHTT--CTTCCHHHHHHHHHHHHHTTSEEEEEEECTT-----SCEEEEEEECH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHHHcC--CCCCCcChHHHHHHHHHHCCCeEEEeeecCC-----CCCcEEEEECH
Confidence 355667777774 5678899999999854 3468999999999999999999976532110 12457788764
No 317
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=58.51 E-value=35 Score=25.16 Aligned_cols=47 Identities=4% Similarity=0.114 Sum_probs=36.5
Q ss_pred HHHHHhhhCC--CCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeC
Q 025493 132 QCLKQIIKLK--VATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSN 186 (252)
Q Consensus 132 ~~~~~i~~~~--~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~ 186 (252)
.++.+|...+ ..|..+|++.+ .++...|..+|+.|+-.|.|++.+..
T Consensus 38 ~iL~~l~~~~~~~~~~~ela~~l--------~~~~~tvs~~l~~Le~~Gli~r~~~~ 86 (141)
T 3bro_A 38 TIIDYLSRNKNKEVLQRDLESEF--------SIKSSTATVLLQRMEIKKLLYRKVSG 86 (141)
T ss_dssp HHHHHHHHTTTSCCBHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred HHHHHHHHCCCCCcCHHHHHHHH--------CCCcchHHHHHHHHHHCCCEEeeCCC
Confidence 4556666665 67888888766 36788999999999999999987643
No 318
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=58.47 E-value=14 Score=34.07 Aligned_cols=55 Identities=13% Similarity=0.087 Sum_probs=41.6
Q ss_pred HHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEec
Q 025493 40 LIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAV 102 (252)
Q Consensus 40 ~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~ 102 (252)
.+.+++.+ .+ .+-.+++...+ ++...+.+|.|+.|+.+|+|+++++ ...++|+..
T Consensus 301 ~ll~~l~~-~p--~~t~~~~~~~~--~~S~~TA~r~L~~L~e~GiL~~~~~---gR~~~y~~~ 355 (373)
T 3eqx_A 301 ELVQVIFE-QP--YCRIQNLVESG--LAKRQTASVYLKQLCDIGVLEEVQS---GKEKLFVHP 355 (373)
T ss_dssp HHHHHHHH-CS--EEEHHHHHHTS--SSCHHHHHHHHHHHHHTTSCEEC-----CCSCEEECH
T ss_pred HHHHHHHH-CC--CccHHHHHHHh--CcCHHHHHHHHHHHHHCCcEEEeCC---CCceEeehH
Confidence 45666666 33 46778888888 9999999999999999999999864 234678653
No 319
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=58.46 E-value=17 Score=27.94 Aligned_cols=53 Identities=8% Similarity=0.298 Sum_probs=43.5
Q ss_pred HHHHHHHHhhh-CCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 129 VKSQCLKQIIK-LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 129 l~~~~~~~i~~-~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
....++.+|.. .+.+|..||++.+... -.++..-|-.+|+.|+-.|.|++.+.
T Consensus 10 ~e~~vL~~L~~~~~~~t~~el~~~l~~~----~~~~~~Tvt~~l~rLe~kGlv~r~~~ 63 (138)
T 2g9w_A 10 LERAVMDHLWSRTEPQTVRQVHEALSAR----RDLAYTTVMAVLQRLAKKNLVLQIRD 63 (138)
T ss_dssp HHHHHHHHHHTCSSCEEHHHHHHHHTTT----CCCCHHHHHHHHHHHHHTTSEEEEC-
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhcc----CCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 35568888887 5899999999999743 24678899999999999999999763
No 320
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=58.12 E-value=21 Score=26.57 Aligned_cols=58 Identities=10% Similarity=0.118 Sum_probs=45.6
Q ss_pred CcCCHHHHHHHHHHHHHH-hhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeE
Q 025493 119 GSLDTEFIKVVKSQCLKQ-IIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIM 181 (252)
Q Consensus 119 ~e~D~efV~~l~~~~~~~-i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE 181 (252)
..|..+-++.|++....| ....+..|.+|+...++..|. .++.++++.++... ||.|.
T Consensus 8 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~---~~~~~~~~~~~~~~--~g~i~ 66 (153)
T 2ovk_B 8 VKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGR---VPPDDELNAMLKEC--PGQLN 66 (153)
T ss_dssp TTCCHHHHHHHHHHHHHHCCSTTTCCCHHHHHHHTTTTTS---CCCHHHHHHHHHHS--SSCCC
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHhCC---CCCHHHHHHHHHHc--CCCCC
Confidence 356777788887766655 235689999999999999885 68999999999987 77653
No 321
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=57.80 E-value=21 Score=29.66 Aligned_cols=53 Identities=11% Similarity=0.105 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeC
Q 025493 125 FIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSN 186 (252)
Q Consensus 125 fV~~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~ 186 (252)
=|-.-+..++.||. .|..|..+|++-+ .||-..++=+|.+|.-||.|++++.+
T Consensus 8 ~v~erk~~ILE~Lk-~G~~~t~~Iak~L--------GlShg~aq~~Ly~LeREG~V~~Vk~G 60 (165)
T 2vxz_A 8 EVLVRLRDILALLA-DGCKTTSLIQQRL--------GLSHGRAKALIYVLEKEGRVTRVAFG 60 (165)
T ss_dssp HHHHHHHHHHHHHT-TCCEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSCEEEEET
T ss_pred HHHHHHHHHHHHHH-hCCccHHHHHHHh--------CCcHHHHHHHHHHHHhcCceEEEEEc
Confidence 34566788999999 8888888887644 37889999999999999999998753
No 322
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=57.74 E-value=17 Score=29.80 Aligned_cols=47 Identities=15% Similarity=-0.015 Sum_probs=34.9
Q ss_pred HHHHHHHHhhhCC-CCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEE
Q 025493 129 VKSQCLKQIIKLK-VATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEV 183 (252)
Q Consensus 129 l~~~~~~~i~~~~-~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v 183 (252)
+.+.+..++..++ .||..||++.+. ++..-+.+.|+.|+-+|.|++.
T Consensus 10 il~~I~~~~~~~g~~~s~~eia~~lg--------l~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 10 VLLFIEEFIEKNGYPPSVREIARRFR--------ITPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHT--------SCHHHHHHHHHHHHHTTSEECC
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHcC--------CCcHHHHHHHHHHHHCCCEEec
Confidence 3444555555555 689999998774 3344699999999999999864
No 323
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=57.70 E-value=20 Score=26.83 Aligned_cols=48 Identities=8% Similarity=0.212 Sum_probs=38.7
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 129 VKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 129 l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
-+-.++.+|...+ .|..+|++.+. ++..-|..+|+.|+-.|.|++.+.
T Consensus 39 ~~~~iL~~l~~~~-~t~~eLa~~l~--------~s~~tvs~~l~~L~~~Glv~r~~~ 86 (146)
T 3tgn_A 39 TQEHILMLLSEES-LTNSELARRLN--------VSQAAVTKAIKSLVKEGMLETSKD 86 (146)
T ss_dssp HHHHHHHHHTTCC-CCHHHHHHHHT--------CCHHHHHHHHHHHHHTTSEEC---
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHC--------CCHHHHHHHHHHHHHCCCeEeccC
Confidence 3556778888888 99999999883 678899999999999999998764
No 324
>1h8b_A ACT-EF34, alpha-actinin 2, skeletal muscle isoform; structural protein, Z-DISK structural complex; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=57.42 E-value=15 Score=26.01 Aligned_cols=42 Identities=10% Similarity=0.037 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHh-hcC
Q 025493 127 KVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVV-LDN 178 (252)
Q Consensus 127 ~~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLV-yDg 178 (252)
+.|+++..-|-...+++|.+++.. .|+.++|+.+++.+- +||
T Consensus 10 eel~eAFr~f~dg~G~It~~eLr~----------~lt~eevd~~i~~~d~~dg 52 (75)
T 1h8b_A 10 EQVIASFRILASDKPYILAEELRR----------ELPPDQAQYCIKRMPAYSG 52 (75)
T ss_dssp HHHHHHHHHHTTSCSSBCHHHHHH----------HSCHHHHHHHHHHSCSCCC
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHh----------cCCHHHHHHHHHhcCcccC
Confidence 566666666634578999999998 499999999999987 664
No 325
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=57.36 E-value=18 Score=30.07 Aligned_cols=40 Identities=10% Similarity=0.223 Sum_probs=34.7
Q ss_pred cHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEe
Q 025493 55 WTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMA 101 (252)
Q Consensus 55 w~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL 101 (252)
.-++|..+. |+..+.|..+|+.|+..|||... +++-.|+.
T Consensus 33 sE~eLa~~~--gVSR~tVReAL~~L~~eGlv~~~-----~g~G~~V~ 72 (239)
T 1hw1_A 33 AERELSELI--GVTRTTLREVLQRLARDGWLTIQ-----HGKPTKVN 72 (239)
T ss_dssp CHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEE-----TTEEEEEC
T ss_pred CHHHHHHHH--CCCHHHHHHHHHHHHHCCcEEEe-----cCCCcEee
Confidence 579999999 99999999999999999999986 45556654
No 326
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=57.29 E-value=10 Score=33.18 Aligned_cols=33 Identities=15% Similarity=0.260 Sum_probs=30.7
Q ss_pred cHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeee
Q 025493 55 WTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVV 89 (252)
Q Consensus 55 w~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vk 89 (252)
..++|..+. ++...+|.++|..|++.|+|...+
T Consensus 55 se~~La~~~--~vSr~tvr~Al~~L~~~G~i~~~~ 87 (272)
T 3eet_A 55 SQARIREEY--GVSDTVALEARKVLMAEGLVEGRS 87 (272)
T ss_dssp CHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEECC
T ss_pred CHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEEec
Confidence 589999999 999999999999999999998863
No 327
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=56.87 E-value=15 Score=27.68 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=33.4
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 131 SQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 131 ~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
-.++.+|..++..|..+|++.+ .++..-|-.+|+.|+-.|.|++...
T Consensus 40 ~~vL~~l~~~~~~t~~eLa~~l--------~~~~~tvs~~l~~L~~~Glv~r~~~ 86 (142)
T 3ech_A 40 VHVLKLIDEQRGLNLQDLGRQM--------CRDKALITRKIRELEGRNLVRRERN 86 (142)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHH--------C---CHHHHHHHHHHHTTSEEC---
T ss_pred HHHHHHHHhCCCcCHHHHHHHh--------CCCHHHHHHHHHHHHHCCCEeeccC
Confidence 3466667777788888888776 3567788999999999999998764
No 328
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=56.86 E-value=14 Score=30.88 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=40.0
Q ss_pred CCChHHHHHHHHHHhhcCCCcccHHHHHHH-----hhcCCChHHHH----HHHHHHHhc---CCeeeee
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRE-----LKVNLPDNIVT----KSIKSLQNK---SLIKEVV 89 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw~~dik~~-----~~~~l~~~~l~----k~lK~Le~k---~lIK~vk 89 (252)
.||+-|+.|+.++-+ ..+++...++|-.+ . ++..++|. ++.++|+.. .+|+.|.
T Consensus 182 ~LT~rE~evL~ll~~-g~~~~~s~~eIa~~l~~~~l--~~s~~TV~~hi~~lr~KL~~~~~~~~I~tvr 247 (249)
T 3q9s_A 182 RLSPKEFDILALLIR-QPGRVYSRQEIGQEIWQGRL--PEGSNVVDVHMANLRAKLRDLDGYGLLRTVR 247 (249)
T ss_dssp CCCHHHHHHHHHHHH-STTCCCCHHHHHHHHHTTCS--CTTCSHHHHHHHHHHHHHCCCSCCCSSCCC-
T ss_pred ecCHHHHHHHHHHHH-CCCceEcHHHHHHHhcCCCC--CCCccCHHHHHHHHHHHhhcCCCCCeEEecc
Confidence 599999999999999 88899999999995 5 56656654 555666543 3555554
No 329
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=56.84 E-value=21 Score=27.16 Aligned_cols=50 Identities=12% Similarity=0.187 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhhCCC--CCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 128 VVKSQCLKQIIKLKV--ATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 128 ~l~~~~~~~i~~~~~--~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
.....++..|...+. +|+.||++.+. ++..-|.+.|+.|+-.|.|++...
T Consensus 26 ~~e~~il~~L~~~~~~~~t~~eLa~~l~--------~s~sTV~r~L~~L~~~GlV~r~~~ 77 (123)
T 3r0a_A 26 KADLNVMKSFLNEPDRWIDTDALSKSLK--------LDVSTVQRSVKKLHEKEILQRSQQ 77 (123)
T ss_dssp HHHHHHHHHHHHSTTCCEEHHHHHHHHT--------SCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHHC--------cCHHHHHHHHHHHHHCCCEEeeCC
Confidence 345668888887766 79999999874 688999999999999999998753
No 330
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=56.63 E-value=20 Score=27.75 Aligned_cols=51 Identities=18% Similarity=0.147 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 127 KVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 127 ~~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
+.+...++..|+..+..|..+|++.+ .+|..-+.+.|+.|.-.|.|.+...
T Consensus 8 d~~d~~il~~L~~~~~~s~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~~~ 58 (151)
T 2dbb_A 8 DRVDMQLVKILSENSRLTYRELADIL--------NTTRQRIARRIDKLKKLGIIRKFTI 58 (151)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHT--------TSCHHHHHHHHHHHHHHTSEEEEEE
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEEEe
Confidence 35567888899999999999999865 3788999999999999999987653
No 331
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=56.23 E-value=28 Score=23.82 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=40.4
Q ss_pred cCCHHHHHHHHHHHHHHh-hhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhc
Q 025493 120 SLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLD 177 (252)
Q Consensus 120 e~D~efV~~l~~~~~~~i-~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyD 177 (252)
..+.+-.+.|++....|= ...+..+.+|+...++..| ..++.++++.++..+-.|
T Consensus 2 ~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g---~~~~~~~~~~l~~~~d~~ 57 (92)
T 2kn2_A 2 HMDTDAEEELKEAFKVFDKDQNGYISASELRHVMINLG---EKLTDEEVEQMIKEADLD 57 (92)
T ss_dssp CCCCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTT---CCCCHHHHHHHHHHHCSS
T ss_pred CCCccHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHhC---CCCCHHHHHHHHHHhCCC
Confidence 345555666666555442 2457899999999999987 468899999999887544
No 332
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=56.11 E-value=31 Score=25.55 Aligned_cols=46 Identities=7% Similarity=0.139 Sum_probs=36.7
Q ss_pred HHHHHh-hhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 132 QCLKQI-IKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 132 ~~~~~i-~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
.++.+| ...+..|..+|++.+ .++..-|..+|+.|+-.|.|++...
T Consensus 41 ~iL~~l~~~~~~~t~~~la~~l--------~~s~~~vs~~l~~L~~~glv~r~~~ 87 (146)
T 2fbh_A 41 LVLLHLARHRDSPTQRELAQSV--------GVEGPTLARLLDGLESQGLVRRLAV 87 (146)
T ss_dssp HHHHHHHHCSSCCBHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHHHcCCCCCHHHHHHHh--------CCChhhHHHHHHHHHHCCCeeecCC
Confidence 455666 566778888888776 3678899999999999999998764
No 333
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=55.95 E-value=31 Score=26.08 Aligned_cols=50 Identities=14% Similarity=0.198 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEe
Q 025493 127 KVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVK 184 (252)
Q Consensus 127 ~~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~ 184 (252)
+.....++.++...+.+|..+|++.+ .++..-|..+|+.|+-.|.|++.+
T Consensus 7 ~~~L~~i~~l~~~~~~~~~~ela~~l--------~vs~~tvs~~l~~Le~~Glv~r~~ 56 (142)
T 1on2_A 7 EMYIEQIYMLIEEKGYARVSDIAEAL--------AVHPSSVTKMVQKLDKDEYLIYEK 56 (142)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHh--------CCCHHHHHHHHHHHHHCCCEEEee
Confidence 34455566667677889999999866 367889999999999999999864
No 334
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=55.87 E-value=21 Score=27.36 Aligned_cols=47 Identities=13% Similarity=0.243 Sum_probs=37.1
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeC
Q 025493 132 QCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSN 186 (252)
Q Consensus 132 ~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~ 186 (252)
.++.+|..++..|..+|++.+ .++..-+-.+|+.|+-.|.|++....
T Consensus 54 ~vL~~l~~~~~~t~~eLa~~l--------~~~~~tvs~~l~~Le~~Glv~r~~~~ 100 (159)
T 3s2w_A 54 PFLMRLYREDGINQESLSDYL--------KIDKGTTARAIQKLVDEGYVFRQRDE 100 (159)
T ss_dssp HHHHHHHHSCSEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEECC
T ss_pred HHHHHHHHCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEEecCC
Confidence 355566666777888888766 36788999999999999999988643
No 335
>2igp_A Retinoblastoma-associated protein HEC; calponin homology (CH) domain, alpha helices, cell cycle; 1.80A {Homo sapiens}
Probab=55.71 E-value=30 Score=26.91 Aligned_cols=60 Identities=12% Similarity=0.102 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHHHhhhCC-----------CCCHHH---HHHHHHHcCCcceecC----HHHHHHHHHHHhhcCee
Q 025493 121 LDTEFIKVVKSQCLKQIIKLK-----------VATLEG---ISDSIKRSGAFKVDLT----KQQIEEIVRAVVLDNQI 180 (252)
Q Consensus 121 ~D~efV~~l~~~~~~~i~~~~-----------~~T~~~---I~~~i~~~~i~~~~Ls----~~di~~IL~tLVyDgkI 180 (252)
=|.+|+....+.+..||..++ .||..| |.+||=+.=-.+..+. +|||-.+++.|-|=..|
T Consensus 11 ~Dk~~q~~~~~~i~~fL~~~~~~~~is~k~L~~Pt~kdF~~if~fL~~~idp~~~~~~~~~eeev~~~lK~L~YP~~i 88 (120)
T 2igp_A 11 NDKAFIQQCIRQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFLCPSYELPDTKFEEEVPRIFKDLGYPFAL 88 (120)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCSSCCCTTTTSSCCHHHHHHHHHHHHTTTCTTCCCCCTTHHHHHHHHHHHTTCCSCC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCCCccccCCCCHHHHHHHHHHHHHhcCCCCccCCCChHHHHHHHHHHcCCCcee
Confidence 388999999999999998654 455444 4455544211123342 67888888888887754
No 336
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=55.69 E-value=32 Score=25.35 Aligned_cols=48 Identities=6% Similarity=0.161 Sum_probs=38.9
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeC
Q 025493 131 SQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSN 186 (252)
Q Consensus 131 ~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~ 186 (252)
-.++.+|..++..|..+|++.+ .++..-|..+|+.|+-.|.|++....
T Consensus 34 ~~iL~~l~~~~~~~~~ela~~l--------~is~~~vs~~l~~L~~~gli~~~~~~ 81 (142)
T 3bdd_A 34 YSILQTLLKDAPLHQLALQERL--------QIDRAAVTRHLKLLEESGYIIRKRNP 81 (142)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred HHHHHHHHhCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEecCCC
Confidence 3466677777788999998876 36788999999999999999987643
No 337
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=55.59 E-value=18 Score=27.24 Aligned_cols=47 Identities=15% Similarity=0.116 Sum_probs=37.0
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 131 SQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 131 ~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
-.++.+|..++..|..+|++.+ .++..-+-.+|+.|+-.|.|++...
T Consensus 34 ~~iL~~l~~~~~~t~~eLa~~l--------~~~~~tvs~~l~~Le~~Glv~r~~~ 80 (145)
T 3g3z_A 34 FAVLYTLATEGSRTQKHIGEKW--------SLPKQTVSGVCKTLAGQGLIEWQEG 80 (145)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEECCC
T ss_pred HHHHHHHHHCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEeeccC
Confidence 3455666666778888888765 3678899999999999999998764
No 338
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=55.14 E-value=23 Score=26.30 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=36.5
Q ss_pred HHHHHhhhCC--CCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeC
Q 025493 132 QCLKQIIKLK--VATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSN 186 (252)
Q Consensus 132 ~~~~~i~~~~--~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~ 186 (252)
.++.+|..++ ..|..+|++.+ .++..-|-.+|+.|+-.|.|++....
T Consensus 35 ~vL~~l~~~~~~~~t~~ela~~l--------~~~~~tvs~~l~~Le~~Gli~r~~~~ 83 (139)
T 3eco_A 35 HTLGYLYAHQQDGLTQNDIAKAL--------QRTGPTVSNLLRNLERKKLIYRYVDA 83 (139)
T ss_dssp HHHHHHHHSTTTCEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEECC
T ss_pred HHHHHHHhcCCCCcCHHHHHHHh--------CCCcccHHHHHHHHHHCCCEeecCCC
Confidence 4555666554 77888887776 36788999999999999999998643
No 339
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=55.12 E-value=12 Score=28.50 Aligned_cols=47 Identities=11% Similarity=0.208 Sum_probs=36.5
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 131 SQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 131 ~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
-.++.+|..++..|..+|++.+ .++..-|-.+|+.|+-.|.|++.+.
T Consensus 44 ~~iL~~l~~~~~~~~~eLa~~l--------~~~~~~vs~~l~~L~~~Glv~r~~~ 90 (149)
T 4hbl_A 44 YLVMLTLWEENPQTLNSIGRHL--------DLSSNTLTPMLKRLEQSGWVKRERQ 90 (149)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHH--------TCCHHHHHHHHHHHHHHTSEEC---
T ss_pred HHHHHHHHHCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEeeCCC
Confidence 3466667777888888888887 3678899999999999999998764
No 340
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=54.96 E-value=12 Score=31.76 Aligned_cols=39 Identities=21% Similarity=0.361 Sum_probs=33.6
Q ss_pred cHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEE
Q 025493 55 WTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLM 100 (252)
Q Consensus 55 w~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~Ym 100 (252)
.-++|..+. ++...+|.++|+.|++.|+|... +++-.|+
T Consensus 31 se~~La~~~--~vSr~tvr~Al~~L~~~g~i~~~-----~g~G~~V 69 (239)
T 3bwg_A 31 VLETLMAQF--EVSKSTITKSLELLEQKGAIFQV-----RGSGIFV 69 (239)
T ss_dssp CHHHHHHHT--TCCHHHHHHHHHHHHHTTSEEEE-----TTTEEEE
T ss_pred CHHHHHHHH--CCCHHHHHHHHHHHHHCCcEEEe-----CCceEEE
Confidence 578999999 99999999999999999999876 3445555
No 341
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=54.92 E-value=32 Score=25.58 Aligned_cols=47 Identities=11% Similarity=0.116 Sum_probs=37.2
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeC
Q 025493 132 QCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSN 186 (252)
Q Consensus 132 ~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~ 186 (252)
.++.+|...+..|..+|++.+ .++..-|..+|+.|+-.|.|++....
T Consensus 33 ~iL~~l~~~~~~t~~~la~~l--------~~s~~~vs~~l~~Le~~gli~r~~~~ 79 (144)
T 1lj9_A 33 LYLVRVCENPGIIQEKIAELI--------KVDRTTAARAIKRLEEQGFIYRQEDA 79 (144)
T ss_dssp HHHHHHHHSTTEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred HHHHHHHHCcCcCHHHHHHHH--------CCCHhHHHHHHHHHHHCCCEEeecCC
Confidence 455666666777888888776 36788999999999999999987643
No 342
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=54.82 E-value=34 Score=25.24 Aligned_cols=46 Identities=9% Similarity=0.079 Sum_probs=34.6
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeC
Q 025493 133 CLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSN 186 (252)
Q Consensus 133 ~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~ 186 (252)
++.+|..++.+|..+|++.+ .++...|-.+|+.|+-.|.|++....
T Consensus 39 iL~~l~~~~~~~~~~la~~l--------~~~~~tvs~~l~~L~~~gli~r~~~~ 84 (138)
T 1jgs_A 39 VLCSIRCAACITPVELKKVL--------SVDLGALTRMLDRLVCKGWVERLPNP 84 (138)
T ss_dssp HHHHHHHHSSBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEECT
T ss_pred HHHHHHhcCCCCHHHHHHHH--------CCChHHHHHHHHHHHHCCCEEecCCc
Confidence 44555555667777777544 46788999999999999999987643
No 343
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=54.78 E-value=59 Score=23.99 Aligned_cols=52 Identities=12% Similarity=0.163 Sum_probs=42.8
Q ss_pred HHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEE
Q 025493 40 LIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLM 100 (252)
Q Consensus 40 ~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~Ym 100 (252)
.||+++.+ .| .+..++|++++ ++.+..+.-+|==|-..+-|.-.+. ++.+|+
T Consensus 12 ~VW~~L~~-~~--~~s~~el~k~t--~l~d~el~lAIGWLaREdKI~~~~~----~~~l~v 63 (82)
T 2l02_A 12 KVWHALNE-AD--GISIPELARKV--NLSVESTALAVGWLARENKVVIERK----NGLIEI 63 (82)
T ss_dssp HHHHHHHH-CC--SBCHHHHHHHH--TCCHHHHHHHHHHHHTTTSEEEEEE----TTEEEE
T ss_pred HHHHHHhc-cC--CCCHHHHHHHh--CCCHHHHHHHHHHHhccCceeEEee----CCEEEE
Confidence 69999999 65 88899999999 9999999999999988777766542 455554
No 344
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=54.62 E-value=22 Score=27.02 Aligned_cols=45 Identities=4% Similarity=0.191 Sum_probs=33.7
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 133 CLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 133 ~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
++.+|...+..|..+|++.+. ++..-|.++|+.|+-.|.|++...
T Consensus 52 iL~~l~~~~~~t~~ela~~l~--------~s~~tvs~~l~~Le~~glv~r~~~ 96 (153)
T 2pex_A 52 VMLVLWETDERSVSEIGERLY--------LDSATLTPLLKRLQAAGLVTRTRA 96 (153)
T ss_dssp HHHHHHHSCSEEHHHHHHHHT--------CCHHHHHHHHHHHHHTTSEEEEC-
T ss_pred HHHHHHhCCCcCHHHHHHHhC--------CCcccHHHHHHHHHHCCCEeecCC
Confidence 445555556667777776553 778899999999999999998764
No 345
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=54.62 E-value=12 Score=31.99 Aligned_cols=40 Identities=18% Similarity=0.403 Sum_probs=33.8
Q ss_pred cHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEe
Q 025493 55 WTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMA 101 (252)
Q Consensus 55 w~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL 101 (252)
..++|..+. ++...+|.++|+.|++.|+|... +++-.|+.
T Consensus 36 se~~La~~~--~vSr~tvr~Al~~L~~~G~i~~~-----~g~G~~V~ 75 (243)
T 2wv0_A 36 SEREYAEQF--GISRMTVRQALSNLVNEGLLYRL-----KGRGTFVS 75 (243)
T ss_dssp CHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEC-----TTSCEEEC
T ss_pred CHHHHHHHH--CcCHHHHHHHHHHHHHCCcEEEe-----CCCeEEEe
Confidence 579999999 99999999999999999999875 34445553
No 346
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=54.25 E-value=21 Score=27.89 Aligned_cols=47 Identities=11% Similarity=0.089 Sum_probs=36.6
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeC
Q 025493 132 QCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSN 186 (252)
Q Consensus 132 ~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~ 186 (252)
.++.+|...+..|..+|.+.+ .++..-|-.+|+.|+-.|.|++....
T Consensus 49 ~iL~~L~~~~~~t~~eLa~~l--------~is~~tvs~~l~~Le~~GlV~r~~~~ 95 (168)
T 2nyx_A 49 RTLVILSNHGPINLATLATLL--------GVQPSATGRMVDRLVGAELIDRLPHP 95 (168)
T ss_dssp HHHHHHHHHCSEEHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred HHHHHHHHcCCCCHHHHHHHh--------CCCHHHHHHHHHHHHHCCCEEeccCC
Confidence 455566666677788877766 46788999999999999999987643
No 347
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=54.15 E-value=30 Score=26.01 Aligned_cols=47 Identities=17% Similarity=0.175 Sum_probs=36.8
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 131 SQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 131 ~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
-.++.+|...+..|..+|++.+ .++..-|..+|+.|+-.|.|++...
T Consensus 43 ~~iL~~l~~~~~~t~~ela~~l--------~~~~~~vs~~l~~Le~~Glv~r~~~ 89 (152)
T 3bj6_A 43 RAILEGLSLTPGATAPQLGAAL--------QMKRQYISRILQEVQRAGLIERRTN 89 (152)
T ss_dssp HHHHHHHHHSTTEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHHHhCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCeeecCC
Confidence 3455666666777888888766 3678899999999999999998764
No 348
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=54.14 E-value=13 Score=27.25 Aligned_cols=56 Identities=7% Similarity=0.108 Sum_probs=42.6
Q ss_pred cCCHHHHHHHHHHHHHH-hhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcC
Q 025493 120 SLDTEFIKVVKSQCLKQ-IIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDN 178 (252)
Q Consensus 120 e~D~efV~~l~~~~~~~-i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDg 178 (252)
++..+-++.|+++-..| ....|+.|.+|+...++..|. .++.++++++++.+=.||
T Consensus 29 ~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~---~~~~~ei~~l~~~~D~d~ 85 (100)
T 2lv7_A 29 DIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGY---MPNEVELEVIIQRLDMDG 85 (100)
T ss_dssp CCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTC---CCCTTTHHHHHHHHCSSC
T ss_pred cCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCC---CCCHHHHHHHHHHHCCCC
Confidence 55666677777764444 235689999999999999984 689999999999765443
No 349
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=54.08 E-value=20 Score=23.14 Aligned_cols=38 Identities=16% Similarity=0.279 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHh
Q 025493 37 HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQN 81 (252)
Q Consensus 37 ~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~ 81 (252)
.|+.|+.++.+ |...++|...+ +++.+.|...++.+-.
T Consensus 2 re~~vl~l~~~-----g~s~~eIA~~l--~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 2 RERQVLKLIDE-----GYTNHGISEKL--HISIKTVETHRMNMMR 39 (61)
T ss_dssp HHHHHHHHHHT-----SCCSHHHHHHT--CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-----CCCHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 46677777544 78999999999 9999999888877654
No 350
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=54.04 E-value=26 Score=26.55 Aligned_cols=46 Identities=7% Similarity=0.075 Sum_probs=35.0
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEE--Eee
Q 025493 132 QCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIME--VKS 185 (252)
Q Consensus 132 ~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~--v~~ 185 (252)
.++.+|..++..|..+|++.+ .++..-|-.+|+.|+-.|.|++ ...
T Consensus 45 ~iL~~l~~~~~~t~~eLa~~l--------~~~~~tvs~~l~~Le~~Glv~r~~~~~ 92 (154)
T 2qww_A 45 AMINVIYSTPGISVADLTKRL--------IITGSSAAANVDGLISLGLVVKLNKTI 92 (154)
T ss_dssp HHHHHHHHSTTEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEESCC--
T ss_pred HHHHHHHHCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEecCcCC
Confidence 455566666677888888776 3578899999999999999998 654
No 351
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=54.00 E-value=38 Score=26.51 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 141 KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 141 ~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
+.+|.++|++.+ .++..-+++|+..|.-.|.|+.++.
T Consensus 29 ~~~~~~~iA~~~--------~i~~~~l~kil~~L~~~Glv~s~rG 65 (149)
T 1ylf_A 29 SLCTSDYMAESV--------NTNPVVIRKIMSYLKQAGFVYVNRG 65 (149)
T ss_dssp GGCCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEC--
T ss_pred CCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCcEEEccC
Confidence 478999999865 4778999999999999999997763
No 352
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=53.91 E-value=27 Score=25.94 Aligned_cols=47 Identities=13% Similarity=0.127 Sum_probs=36.8
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 131 SQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 131 ~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
-.++.+|...+..|..+|++.+ .++..-|..+|+.|+-.|.|++...
T Consensus 36 ~~iL~~l~~~~~~~~~~la~~l--------~~s~~tvs~~l~~L~~~glv~r~~~ 82 (145)
T 2a61_A 36 FDILQKIYFEGPKRPGELSVLL--------GVAKSTVTGLVKRLEADGYLTRTPD 82 (145)
T ss_dssp HHHHHHHHHHCCBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHH--------CCCchhHHHHHHHHHHCCCeeecCC
Confidence 3455556566678888888766 3678899999999999999998764
No 353
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=53.57 E-value=31 Score=27.72 Aligned_cols=51 Identities=14% Similarity=0.119 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 127 KVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 127 ~~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
+.+...++..|+..+..|..||++-+. +|..-|.+.|+.|.-.|.|++...
T Consensus 16 d~~d~~IL~~L~~~~~~s~~eLA~~lg--------lS~~tv~~~l~~L~~~G~I~~~~~ 66 (171)
T 2ia0_A 16 DDLDRNILRLLKKDARLTISELSEQLK--------KPESTIHFRIKKLQERGVIERYTI 66 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHT--------SCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHC--------cCHHHHHHHHHHHHHCCCEEeecc
Confidence 345667888899888999999998763 789999999999999999987653
No 354
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=53.37 E-value=25 Score=25.91 Aligned_cols=47 Identities=9% Similarity=0.059 Sum_probs=34.9
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeC
Q 025493 132 QCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSN 186 (252)
Q Consensus 132 ~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~ 186 (252)
.++.+|..++..|..+|++.+ .++..-|..+|+.|+-.|.|++....
T Consensus 42 ~iL~~l~~~~~~t~~ela~~l--------~~~~~tvs~~l~~L~~~glv~r~~~~ 88 (140)
T 2nnn_A 42 AALVRLGETGPCPQNQLGRLT--------AMDAATIKGVVERLDKRGLIQRSADP 88 (140)
T ss_dssp HHHHHHHHHSSBCHHHHHHHT--------TCCHHHHHHHHHHHHHTTCEEEEEET
T ss_pred HHHHHHHHcCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEeeCCC
Confidence 355555555566777776654 46788999999999999999987643
No 355
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=53.05 E-value=20 Score=32.19 Aligned_cols=50 Identities=10% Similarity=0.188 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhcCCCcccHHHHHHHhhcCC--ChH---HHHHHHHHHHhcCCeeeee
Q 025493 37 HERLIYDVIRSNKQDMGIWTRDMKRELKVNL--PDN---IVTKSIKSLQNKSLIKEVV 89 (252)
Q Consensus 37 ~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l--~~~---~l~k~lK~Le~k~lIK~vk 89 (252)
-|.-|+++|.+ +|+..+...+|..++ ++ +.. .+.|.|+.|...|++.+..
T Consensus 41 ~~Lgifd~L~~-~g~~~~t~~eLA~~~--g~~~~~~~~~~l~rlLr~L~~~g~l~~~~ 95 (364)
T 3p9c_A 41 IELGLLEILVA-AGGKSLTPTEVAAKL--PSAANPEAPDMVDRILRLLASYNVVTCLV 95 (364)
T ss_dssp HHHTHHHHHHH-TTTCCBCHHHHHHTT--TCTTCTTHHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHCChHHHHhh-cCCCCCCHHHHHHhc--CCCCCccchhhHHHHHHHHHhCCCEEEec
Confidence 35558899999 886789999999999 87 666 8999999999999999864
No 356
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=52.99 E-value=32 Score=26.58 Aligned_cols=49 Identities=8% Similarity=0.121 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEe
Q 025493 128 VVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVK 184 (252)
Q Consensus 128 ~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~ 184 (252)
.+...++..|+..+..|..||++-+ .+|..-+.+.|+.|.-.|.|.+..
T Consensus 8 ~~d~~il~~L~~~~~~s~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~~ 56 (152)
T 2cg4_A 8 NLDRGILEALMGNARTAYAELAKQF--------GVSPETIHVRVEKMKQAGIITGAR 56 (152)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHH--------TSCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHcCCcceEE
Confidence 4566788899998999999999876 378999999999999999999765
No 357
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=52.95 E-value=32 Score=24.17 Aligned_cols=42 Identities=19% Similarity=0.255 Sum_probs=34.5
Q ss_pred HhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 136 QIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 136 ~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
.+...+.+|..||++.+ .++..-|.++|+.|+-.|.|++...
T Consensus 30 l~~~~~~~t~~ela~~l--------~is~~tv~~~l~~L~~~g~v~~~~~ 71 (109)
T 2d1h_A 30 MVEIEKPITSEELADIF--------KLSKTTVENSLKKLIELGLVVRTKT 71 (109)
T ss_dssp HHHHCSCEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHcCCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeEeecc
Confidence 33447789999999866 3678899999999999999998764
No 358
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=52.90 E-value=12 Score=34.28 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=40.3
Q ss_pred HHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEe
Q 025493 39 RLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMA 101 (252)
Q Consensus 39 ~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL 101 (252)
..|.+.+.+ . .-+-..++...+ +++.++++|.|+.|+..|+|++++. . ..++|+-
T Consensus 300 ~~ll~~l~~-~--p~~t~~~~~~~~--gvS~~Ta~r~L~~L~e~GiL~~~~~--g-R~~~y~~ 354 (373)
T 2qc0_A 300 HELVQVIFE-Q--PYCRIQNLVESG--LAKRQTASVYLKQLCDIGVLEEVQS--G-KEKLFVH 354 (373)
T ss_dssp HHHHHHHHH-C--SEEEHHHHHHTS--SSCHHHHHHHHHHHHHTTSCEEC----C-CSCEEEC
T ss_pred HHHHHHHHh-C--CcccHHHHHHHh--CCCHHHHHHHHHHHHHCCcEEEecC--C-CceEEeh
Confidence 345556655 2 345667788888 9999999999999999999999853 2 2367764
No 359
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=52.63 E-value=24 Score=29.42 Aligned_cols=44 Identities=11% Similarity=0.035 Sum_probs=38.1
Q ss_pred CCCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHh
Q 025493 31 SDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQN 81 (252)
Q Consensus 31 ~~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~ 81 (252)
...||+.|+.|+.++.+ |...++|...+ ++..++|...++.+-+
T Consensus 173 ~~~Lt~~e~~vl~~~~~-----g~s~~eIa~~l--~is~~tV~~~~~~~~~ 216 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASK-----GKTASVTANLT--GINARTVQHYLDKARA 216 (236)
T ss_dssp GGSCCHHHHHHHHHHHT-----TCCHHHHHHHH--CCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHc-----CCCHHHHHHHH--CcCHHHHHHHHHHHHH
Confidence 45799999999999754 88999999999 9999999988887644
No 360
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=52.33 E-value=30 Score=26.13 Aligned_cols=44 Identities=14% Similarity=0.297 Sum_probs=34.0
Q ss_pred HHHHhhh---CCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEe
Q 025493 133 CLKQIIK---LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVK 184 (252)
Q Consensus 133 ~~~~i~~---~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~ 184 (252)
++.+|.. .+.+|.++|++.+ .++..-++++|+.|+-.|.|+..+
T Consensus 14 iL~~la~~~~~~~~s~~ela~~~--------~i~~~~v~~il~~L~~~Glv~~~~ 60 (129)
T 2y75_A 14 IMIELAKKHGEGPTSLKSIAQTN--------NLSEHYLEQLVSPLRNAGLVKSIR 60 (129)
T ss_dssp HHHHHHHTTTSCCBCHHHHHHHT--------TSCHHHHHHHHHHHHHTTSEEEC-
T ss_pred HHHHHHhCCCCCcCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCceEecC
Confidence 3445544 3578999998754 478899999999999999998765
No 361
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=52.29 E-value=46 Score=28.15 Aligned_cols=59 Identities=19% Similarity=0.194 Sum_probs=47.7
Q ss_pred cCCcCCHHHHHHHH---------HHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeE
Q 025493 117 SEGSLDTEFIKVVK---------SQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIM 181 (252)
Q Consensus 117 ~d~e~D~efV~~l~---------~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE 181 (252)
-+.++|.+.++.|. ..++.||.++ .-|..|+.+.+.+.| ++++.|+.+|+.|.-.|.|-
T Consensus 42 kg~el~~e~~~~i~~~~~~~~a~~~Al~~Ls~r-~~S~~EL~~KL~~kg-----~~~e~i~~vl~~L~~~g~ld 109 (221)
T 3d5l_A 42 KGTELDEKQIAAIATADQQAKAYSRMLDYLSYQ-MRTESDIVKKLKEID-----TPEEFVEPILKKLRGQQLID 109 (221)
T ss_dssp TTCEECHHHHHHHHHHHHHHHHHHHHHHHHTTS-CCCHHHHHHHHHHTT-----CCHHHHHHHHHHHHHTTCCC
T ss_pred CCCCCCHHHHHHHHHhHHHHHHHHHHHHHhccc-cccHHHHHHHHHhcC-----CCHHHHHHHHHHHHHcCCCC
Confidence 45789988887765 4456666665 668999999999988 47899999999999999874
No 362
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=52.14 E-value=21 Score=26.81 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=37.9
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 130 KSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 130 ~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
.-.++.+|...+..|..+|++.+. ++..-|-.+|+.|+-.|.|++.+.
T Consensus 42 ~~~iL~~l~~~~~~t~~ela~~l~--------~~~~tvs~~l~~Le~~Glv~r~~~ 89 (148)
T 3nrv_A 42 EWRIISVLSSASDCSVQKISDILG--------LDKAAVSRTVKKLEEKKYIEVNGH 89 (148)
T ss_dssp HHHHHHHHHHSSSBCHHHHHHHHT--------CCHHHHHHHHHHHHHTTSEEC---
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHC--------CCHHHHHHHHHHHHHCCCEEeecC
Confidence 345777777888889999988763 678899999999999999998754
No 363
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=52.10 E-value=16 Score=30.18 Aligned_cols=45 Identities=11% Similarity=0.239 Sum_probs=37.9
Q ss_pred CCCCChHHH----HHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHH
Q 025493 31 SDSLTDHER----LIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIK 77 (252)
Q Consensus 31 ~~~l~~~e~----~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK 77 (252)
.+.||+.++ .+.+.|++.-...|+.+++|.+++ +++++.|++.++
T Consensus 4 ~~~lt~~~~~~~~~~~~~l~~~r~~~g~t~~~lA~~~--gis~~~i~~~~~ 52 (236)
T 3bdn_A 4 KKPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKM--GMGQSGVGALFN 52 (236)
T ss_dssp SCCCCSHHHHHHHHHHHHHHHHTTTTTCCSHHHHHHH--TSCHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH--CcCHHHHHHHHc
Confidence 456888777 688888886778899999999999 999999988765
No 364
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=51.98 E-value=47 Score=31.83 Aligned_cols=113 Identities=11% Similarity=0.086 Sum_probs=75.6
Q ss_pred CcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEecccccCCCccCCccccCCcCC--------H
Q 025493 52 MGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLD--------T 123 (252)
Q Consensus 52 ~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~~lePs~eiTGG~wy~d~e~D--------~ 123 (252)
.....++|...| +|+..+|..+|-.|.+.++|.-... .. |-+.|.=+ +| .
T Consensus 32 G~ltL~~I~~~t--~L~~~~Vk~~L~vLIQh~lV~~~~~--~~-----------------~~~~Y~~~-~~~il~~lR~p 89 (534)
T 2xub_A 32 GSQPLRVIAHDT--GTSLDQVKKALCVLVQHNLVSYQVH--KR-----------------GVVEYEAQ-CSRVLRMLRYP 89 (534)
T ss_dssp CSEEHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEEE--TT-----------------TEEEEEEC-HHHHHGGGGHH
T ss_pred CCcCHHHHHHHh--CCCHHHHHHHHHHHHhcCCeeEEeC--CC-----------------CcEEEEEC-hhhHHHHHhhH
Confidence 346778999999 9999999999999999999953211 11 22333211 01 1
Q ss_pred HHHHHHH-------HHHHHHhhhCCCCCHHHHHHHHHHcC----CcceecCHHHHHHHHHHHhhcCeeEEEeeC
Q 025493 124 EFIKVVK-------SQCLKQIIKLKVATLEGISDSIKRSG----AFKVDLTKQQIEEIVRAVVLDNQIMEVKSN 186 (252)
Q Consensus 124 efV~~l~-------~~~~~~i~~~~~~T~~~I~~~i~~~~----i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~ 186 (252)
-|+..++ ..++..|-.+|..|++++..-+.... -....-+.++++..+..|+.+|-|++++..
T Consensus 90 k~l~~i~~~~G~~a~~I~~~ll~~G~~t~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fI~rv~~~ 163 (534)
T 2xub_A 90 RYIYTTKTLYSDTGELIVEELLLNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPSV 163 (534)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTSSSSCCCCHHHHHHHHHHHHHTTSEEECCCC
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHcCCccHHHHHHHHHhhcccccccccccCHHHHHHHHHHHHhCCCEEeCCCC
Confidence 1222222 33444455688999999988776431 011224788999999999999999998754
No 365
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=51.83 E-value=34 Score=25.40 Aligned_cols=47 Identities=13% Similarity=0.072 Sum_probs=36.8
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeC
Q 025493 131 SQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSN 186 (252)
Q Consensus 131 ~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~ 186 (252)
-.++.+|. .+..|..+|++.+ .++..-|..+|+.|+-.|.|++.+..
T Consensus 40 ~~iL~~l~-~~~~~~~ela~~l--------~~s~~tvs~~l~~Le~~glv~r~~~~ 86 (146)
T 2gxg_A 40 FLVLRATS-DGPKTMAYLANRY--------FVTQSAITASVDKLEEMGLVVRVRDR 86 (146)
T ss_dssp HHHHHHHT-TSCBCHHHHHHHT--------TCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred HHHHHHHh-cCCcCHHHHHHHh--------CCCchhHHHHHHHHHHCCCEEeecCC
Confidence 34556666 6778888888765 36788999999999999999987643
No 366
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=51.74 E-value=32 Score=29.65 Aligned_cols=56 Identities=11% Similarity=0.145 Sum_probs=47.7
Q ss_pred CCCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHH-HHHhcCCeeeee
Q 025493 31 SDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIK-SLQNKSLIKEVV 89 (252)
Q Consensus 31 ~~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK-~Le~k~lIK~vk 89 (252)
...++..|+.+...+.+ .+...+-..++...+ +++.+.+.+.|+ .|.+.++|....
T Consensus 258 ~~~l~~~e~~~l~~l~~-~~~~~~~~~~~a~~l--g~~~~tl~~~l~~~l~~~gli~~~~ 314 (338)
T 3pfi_A 258 ELGFDAMDLRYLELLTA-AKQKPIGLASIAAAL--SEDENTIEDVIEPYLLANGYIERTA 314 (338)
T ss_dssp TTCCCHHHHHHHHHHHH-SCSCCBCHHHHHHHT--TCCHHHHHHTTHHHHHHTTSEEEET
T ss_pred ccCCCHHHHHHHHHHHH-hcCCCchHHHHHHHh--CCCHHHHHHHHhHHHHHcCceecCC
Confidence 34677777888888888 677778899999999 999999999999 899999998764
No 367
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=51.44 E-value=20 Score=27.24 Aligned_cols=46 Identities=9% Similarity=0.159 Sum_probs=36.3
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 132 QCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 132 ~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
.++.+|..++..|..+|++.+ .++..-|-.+|+.|+-.|.|++...
T Consensus 47 ~iL~~l~~~~~~t~~ela~~l--------~i~~~tvs~~l~~Le~~Glv~r~~~ 92 (155)
T 3cdh_A 47 RVLACLVDNDAMMITRLAKLS--------LMEQSRMTRIVDQMDARGLVTRVAD 92 (155)
T ss_dssp HHHHHHSSCSCBCHHHHHHHT--------TCCHHHHHHHHHHHHHTTSEEECC-
T ss_pred HHHHHHHHCCCcCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEeccC
Confidence 455666666778888888765 3678899999999999999998653
No 368
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=51.43 E-value=42 Score=24.99 Aligned_cols=50 Identities=10% Similarity=0.082 Sum_probs=40.3
Q ss_pred HHHHHHHHHhhh-CCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 128 VVKSQCLKQIIK-LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 128 ~l~~~~~~~i~~-~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
.-.-.++.+|.. .+..|..+|++.+ .++..-|-.+|+.|+-.|.|++...
T Consensus 35 ~~~~~iL~~l~~~~~~~~~~~la~~l--------~i~~~~vs~~l~~Le~~glv~r~~~ 85 (147)
T 2hr3_A 35 FSQLVVLGAIDRLGGDVTPSELAAAE--------RMRSSNLAALLRELERGGLIVRHAD 85 (147)
T ss_dssp HHHHHHHHHHHHTTSCBCHHHHHHHT--------TCCHHHHHHHHHHHHHTTSEEEEC-
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHh--------CCChhhHHHHHHHHHHCCCEeeCCC
Confidence 334567777877 7889999999875 3678899999999999999998754
No 369
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=51.12 E-value=19 Score=36.07 Aligned_cols=143 Identities=9% Similarity=0.118 Sum_probs=88.5
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHH--hcCCeeeee---ccccCCeeeEEeccccc
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQ--NKSLIKEVV---NIHNKGKKHLMAVEFEP 106 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le--~k~lIK~vk---sv~~~~rK~YmL~~leP 106 (252)
-..|..+..|+-+..+ ...+.-.+|...| +|+...+.|+|..|. ..+++...+ .|.. +-...+-.+++.
T Consensus 589 l~vs~~Qa~iLllFn~---~~~lt~~ei~~~t--~i~~~~l~r~L~sL~~~k~~vL~~~p~~~~v~~-~d~f~lN~~f~~ 662 (759)
T 2hye_C 589 FQVSLFQTLVLLMFNE---GDGFSFEEIKMAT--GIEDSELRRTLQSLACGKARVLIKSPKGKEVED-GDKFIFNGEFKH 662 (759)
T ss_dssp EEEEHHHHHHHHHTTS---CCCEEHHHHHHHT--CCCHHHHHHHHHTTTTTTTCSEEETTCSSSCCS-SCEEEECCCCCC
T ss_pred EEEcHHHHHHHHHhcC---CCCcCHHHHHHHH--CcCHHHHHHHHHHHHccCCceeecCCCCCCCCC-CCEEEeeccccC
Confidence 3567788888866544 4578889999999 999999999999997 445554321 1111 111111112211
Q ss_pred CC-Cc----cCCccccC-------CcCCHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHH-cCCcceecCHHHHHHHHHH
Q 025493 107 SK-DI----SGGAWYSE-------GSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKR-SGAFKVDLTKQQIEEIVRA 173 (252)
Q Consensus 107 s~-ei----TGG~wy~d-------~e~D~efV~~l~~~~~~~i~~~~~~T~~~I~~~i~~-~~i~~~~Ls~~di~~IL~t 173 (252)
.. .+ .... -+. .+.+.+=...|..+|.+.+..+...+-+++..-+.+ .. ...+..+|.+-|+.
T Consensus 663 ~~~riki~~i~~~-e~~~e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~---F~p~~~~IKk~Ie~ 738 (759)
T 2hye_C 663 KLFRIKINQIQMK-ETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLK---FPVKPGDLKKRIES 738 (759)
T ss_dssp SCSSEECGGGGGC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEETHHHHHHHHHHSS---SCCCHHHHHHHHHH
T ss_pred CceEEEecccccc-ccchhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC---CCCCHHHHHHHHHH
Confidence 10 00 0000 000 111122222577778888888888887776555443 33 56889999999999
Q ss_pred HhhcCeeEEEe
Q 025493 174 VVLDNQIMEVK 184 (252)
Q Consensus 174 LVyDgkIE~v~ 184 (252)
|+-.+-|++..
T Consensus 739 LIereYleR~~ 749 (759)
T 2hye_C 739 LIDRDYMERDK 749 (759)
T ss_dssp HHHTTSCBCCS
T ss_pred HhcccceecCC
Confidence 99999999754
No 370
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=51.05 E-value=33 Score=26.06 Aligned_cols=49 Identities=8% Similarity=0.144 Sum_probs=37.5
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeC
Q 025493 130 KSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSN 186 (252)
Q Consensus 130 ~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~ 186 (252)
.-.++.+|...+..|..+|++.+ .++..-|-.+|+.|+-.|.|++....
T Consensus 46 ~~~iL~~l~~~~~~t~~ela~~l--------~is~~tvs~~l~~Le~~Gli~r~~~~ 94 (154)
T 2eth_A 46 ELYAFLYVALFGPKKMKEIAEFL--------STTKSNVTNVVDSLEKRGLVVREMDP 94 (154)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHT--------TSCHHHHHHHHHHHHHTTSEEEEECT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEeeCCC
Confidence 33455666666677888887765 36788999999999999999987643
No 371
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=51.00 E-value=33 Score=25.37 Aligned_cols=67 Identities=12% Similarity=0.101 Sum_probs=47.9
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeCCCCCcccccCCcceeeccc
Q 025493 128 VVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVS 205 (252)
Q Consensus 128 ~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~g~~~f~~~~~g~~~YR~~~ 205 (252)
.+.-.++..|.. +..+--+|.+.|.+ ...++...|-.+|+.|+-+|.|++...... ...+..|+++.
T Consensus 9 ~l~~~IL~~L~~-~~~~gyel~~~l~~----~~~i~~~tly~~L~~Le~~GlI~~~~~~~~------~r~r~~y~LT~ 75 (108)
T 3l7w_A 9 LIEYLILAIVSK-HDSYGYDISQTIKL----IASIKESTLYPILKKLEKAGYLSTYTQEHQ------GRRRKYYHLTD 75 (108)
T ss_dssp HHHHHHHHHHHH-SCEEHHHHHHHHTT----TCCCCHHHHHHHHHHHHHTTSEEEEEEEET------TEEEEEEEECH
T ss_pred HHHHHHHHHHHc-CCCcHHHHHHHHHH----HhCCCcChHHHHHHHHHHCCCeEEEeecCC------CCcceEEEECH
Confidence 345567777765 46677888888876 256899999999999999999998753211 11245677654
No 372
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=50.87 E-value=91 Score=25.00 Aligned_cols=62 Identities=8% Similarity=0.072 Sum_probs=45.4
Q ss_pred cccCCcCCHHHHHHHHHHHHHHhhh-CCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEe
Q 025493 115 WYSEGSLDTEFIKVVKSQCLKQIIK-LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVK 184 (252)
Q Consensus 115 wy~d~e~D~efV~~l~~~~~~~i~~-~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~ 184 (252)
+|..-.+-+.+--.|+-.++--... .+.+|.++|++.+ .++..-+++|+..|.-.|.|+..+
T Consensus 16 ~~~~M~lS~~~~yAlr~L~~LA~~~~~~~~s~~eIA~~~--------~i~~~~l~kil~~L~~aGlv~s~r 78 (159)
T 3lwf_A 16 YFQGMKITTKGRYGLTITLELAKRIGDGPISLRSIAQDK--------NLSEHYLEQLIGPLRNAGIVKSIR 78 (159)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHHTTTSCCBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred eeeeeeCchHHHHHHHHHHHHHhcCCCCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCeEEEec
Confidence 4455567777666666554433332 3478999999865 477899999999999999999876
No 373
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=50.71 E-value=27 Score=27.72 Aligned_cols=45 Identities=27% Similarity=0.437 Sum_probs=37.9
Q ss_pred CCCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhc
Q 025493 31 SDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNK 82 (252)
Q Consensus 31 ~~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k 82 (252)
...||+-|+.|+.++.+ |...++|-.++ ++..++|...++.|-+|
T Consensus 152 ~~~Lt~rE~~vl~~l~~-----g~s~~~Ia~~l--~is~~TV~~hi~~i~~K 196 (215)
T 1a04_A 152 VNQLTPRERDILKLIAQ-----GLPNKMIARRL--DITESTVKVHVKHMLKK 196 (215)
T ss_dssp GGGSCHHHHHHHHHHHT-----TCCHHHHHHHH--TCCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHc-----CCCHHHHHHHH--CCCHHHHHHHHHHHHHH
Confidence 34699999999999987 45789999999 99999998888877544
No 374
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=50.50 E-value=33 Score=29.35 Aligned_cols=67 Identities=7% Similarity=0.066 Sum_probs=51.1
Q ss_pred cCCcCCHHHHHHHHHHHHHHhhh-CCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEe
Q 025493 117 SEGSLDTEFIKVVKSQCLKQIIK-LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVK 184 (252)
Q Consensus 117 ~d~e~D~efV~~l~~~~~~~i~~-~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~ 184 (252)
+.+.|-.|+--+|-+.|...+.+ .+..|+.|+...+++..-. ..+|++|+.+-++.|.-=|.=.+++
T Consensus 69 s~~~f~~ELa~qi~e~c~~~~~~~GG~I~L~dl~~~~nraRG~-~lVSp~Dl~~A~~~l~~Lg~~~~l~ 136 (218)
T 3cuq_B 69 SGTQYHMQLAKQLAGILQVPLEERGGIMSLTEVYCLVNRARGM-ELLSPEDLVNACKMLEALKLPLRLR 136 (218)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHTTSEEEHHHHHHHHHHTCSS-SCCCHHHHHHHHHTTTTTTCSEEEE
T ss_pred cccHHHHHHHHHHHHHHHHHHHhCCCeEEHHHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 46677777777777788877764 4689999999999987633 5599999999999998655434443
No 375
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=50.46 E-value=46 Score=25.21 Aligned_cols=70 Identities=13% Similarity=0.141 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeCCCCCcccccCCcceeeccc
Q 025493 128 VVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVS 205 (252)
Q Consensus 128 ~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~g~~~f~~~~~g~~~YR~~~ 205 (252)
.|.-.++..|.. +..+--+|.+.|.+.| -..++...+-.+|+.|+-+|.|+....... ..+.++.|+++.
T Consensus 13 ~l~~~IL~lL~~-~p~~Gyei~~~l~~~g--~~~is~gtlY~~L~rLe~~GlI~~~~~~~~-----~g~~rk~Y~lT~ 82 (116)
T 3hhh_A 13 ILEGLVLAIIQR-KETYGYEITKILNDQG--FTEIVEGTVYTILLRLEKNQWVIAEKKPSE-----KGPMRKFYRLTS 82 (116)
T ss_dssp HHHHHHHHHHHH-SCBCHHHHHHHHHTTS--CSSCCHHHHHHHHHHHHHTTSEEEEEEECC-------CEEEEEEECH
T ss_pred hHHHHHHHHHhc-CCCCHHHHHHHHHHcC--CCCCCccHHHHHHHHHHHCCCEEEEeeecC-----CCCCceEEEECH
Confidence 355566777764 5678889999999855 346899999999999999999997653211 013467788764
No 376
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=50.41 E-value=53 Score=24.54 Aligned_cols=110 Identities=15% Similarity=0.321 Sum_probs=69.0
Q ss_pred CCCCCChHHH----HHHHHHHhhcCCCcccHHHHHHHh---hcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEec
Q 025493 30 PSDSLTDHER----LIYDVIRSNKQDMGIWTRDMKREL---KVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAV 102 (252)
Q Consensus 30 ~~~~l~~~e~----~vy~~I~~~ag~~GIw~~dik~~~---~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~ 102 (252)
....|++++. .++..+.. .|+.-|-..+++.-. +.+++...+..+++.+-..
T Consensus 18 ~~~~l~~~~~~~l~~~F~~~D~-d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~-------------------- 76 (169)
T 3qrx_A 18 GRVGLTEEQKQEIREAFDLFDT-DGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKD-------------------- 76 (169)
T ss_dssp --CCCCHHHHHHHHHHHHHHCT-TCCSEECHHHHHHHHHHTSCCCCHHHHHHHHHHHCSS--------------------
T ss_pred cCCCCCHHHHHHHHHHHHHhCC-CCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC--------------------
Confidence 3456787653 45566666 677778888887643 2234556666666554211
Q ss_pred ccccCCCccCCccccCCcCC-HHHHHHHHHHH------------HHHhh--hCCCCCHHHHHHHHHHcCCcceecCHHHH
Q 025493 103 EFEPSKDISGGAWYSEGSLD-TEFIKVVKSQC------------LKQII--KLKVATLEGISDSIKRSGAFKVDLTKQQI 167 (252)
Q Consensus 103 ~lePs~eiTGG~wy~d~e~D-~efV~~l~~~~------------~~~i~--~~~~~T~~~I~~~i~~~~i~~~~Ls~~di 167 (252)
.||.++ .||+..+.... ++.+. ..++.|.+|+..+++..| ..++.+++
T Consensus 77 --------------~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g---~~~~~~~~ 139 (169)
T 3qrx_A 77 --------------GSGTIDFEEFLTMMTAKMGERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELG---ENLTEEEL 139 (169)
T ss_dssp --------------SSSSEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTT---CCCCHHHH
T ss_pred --------------CCCcCCHHHHHHHHHHHhcccCcHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcC---CCCCHHHH
Confidence 022232 45666655432 11121 458999999999999887 57999999
Q ss_pred HHHHHHHhhc
Q 025493 168 EEIVRAVVLD 177 (252)
Q Consensus 168 ~~IL~tLVyD 177 (252)
+.+++.+-.|
T Consensus 140 ~~~~~~~D~~ 149 (169)
T 3qrx_A 140 QEMIAEADRN 149 (169)
T ss_dssp HHHHHHHCCS
T ss_pred HHHHHHhCCC
Confidence 9999987544
No 377
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=50.31 E-value=25 Score=27.97 Aligned_cols=45 Identities=18% Similarity=0.259 Sum_probs=35.6
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcC-----CChHHHHHHHHHH
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVN-----LPDNIVTKSIKSL 79 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~-----l~~~~l~k~lK~L 79 (252)
..||+-|..|+.++.+ .-++.+..++|-.+. + +..++|...++.|
T Consensus 150 ~~Lt~rE~~vL~~l~~-~~~~~~s~~eIa~~l--~~~~~~~s~~tv~~hi~~l 199 (225)
T 1kgs_A 150 IDLTKKEYQILEYLVM-NKNRVVTKEELQEHL--WSFDDEVFSDVLRSHIKNL 199 (225)
T ss_dssp ECCCHHHHHHHHHHHH-TTTSCEEHHHHHHHC--C-----CHHHHHHHHHHHH
T ss_pred EecCHHHHHHHHHHHh-CCCcccCHHHHHHHh--cCCCCCCCcchHHHHHHHH
Confidence 3599999999999999 777789999999998 6 6666665554444
No 378
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=50.08 E-value=45 Score=24.45 Aligned_cols=63 Identities=13% Similarity=0.134 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhhC-CCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeCCCCCcccccCCcceeeccc
Q 025493 127 KVVKSQCLKQIIKL-KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVS 205 (252)
Q Consensus 127 ~~l~~~~~~~i~~~-~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~g~~~f~~~~~g~~~YR~~~ 205 (252)
+.+...++.+++.+ ..+|=+++..-+ -.++.++...+||.|.-.|+|+-.+..+ ...||+..
T Consensus 13 ~~ie~~IL~l~~~~P~GItd~~L~~~~-------p~~~~~~r~~aIN~LL~~gkiel~K~~~----------~liYr~k~ 75 (81)
T 2dk8_A 13 VEIENRIIELCHQFPHGITDQVIQNEM-------PHIEAQQRAVAINRLLSMGQLDLLRSNT----------GLLYRIKD 75 (81)
T ss_dssp HHHHHHHHHHHHHCSSCEEHHHHHHHC-------TTSCHHHHHHHHHHHHHHTSEEEEECSS----------SEEEEECC
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHC-------CCCCHHHHHHHHHHHHHcCCeEEEecCC----------eEEEEecc
Confidence 45566677787755 466777765554 3577999999999999999999776432 35799765
Q ss_pred C
Q 025493 206 K 206 (252)
Q Consensus 206 ~ 206 (252)
+
T Consensus 76 ~ 76 (81)
T 2dk8_A 76 S 76 (81)
T ss_dssp C
T ss_pred c
Confidence 4
No 379
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=49.90 E-value=17 Score=27.45 Aligned_cols=48 Identities=6% Similarity=0.167 Sum_probs=37.9
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeC
Q 025493 131 SQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSN 186 (252)
Q Consensus 131 ~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~ 186 (252)
-.++.+|..++..|..+|++.+. ++..-+-.+|+.|+-.|.|++.+..
T Consensus 39 ~~vL~~l~~~~~~t~~eLa~~l~--------~~~~tvs~~l~~L~~~Glv~r~~~~ 86 (140)
T 3hsr_A 39 YIVLMAIENDEKLNIKKLGERVF--------LDSGTLTPLLKKLEKKDYVVRTREE 86 (140)
T ss_dssp HHHHHHSCTTCEEEHHHHHHHHT--------CCHHHHHHHHHHHHHTTSEEEEC--
T ss_pred HHHHHHHHHcCCcCHHHHHHHHC--------CChhhHHHHHHHHHHCCCeEecCCC
Confidence 34566666777888999988763 6788999999999999999988643
No 380
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=49.86 E-value=54 Score=24.58 Aligned_cols=47 Identities=11% Similarity=0.110 Sum_probs=37.7
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEe
Q 025493 130 KSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVK 184 (252)
Q Consensus 130 ~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~ 184 (252)
+..++.+|...+..|+.||++.+ | ++..-|.+.|+.|+-.|.|+..+
T Consensus 44 rl~IL~~L~~~~~~s~~eLa~~l---~-----is~stvs~~L~~L~~~Glv~~~~ 90 (122)
T 1u2w_A 44 RAKITYALCQDEELCVCDIANIL---G-----VTIANASHHLRTLYKQGVVNFRK 90 (122)
T ss_dssp HHHHHHHHHHSSCEEHHHHHHHH---T-----CCHHHHHHHHHHHHHTTSEEEC-
T ss_pred HHHHHHHHHHCCCcCHHHHHHHH---C-----cCHHHHHHHHHHHHHCCCeEEEE
Confidence 44677778767788899988776 2 67889999999999999998754
No 381
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=49.79 E-value=38 Score=25.86 Aligned_cols=46 Identities=4% Similarity=0.013 Sum_probs=36.0
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 132 QCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 132 ~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
.++.+|...+..|..+|++.+ .++..-|..+|+.|+-.|.|++...
T Consensus 56 ~iL~~l~~~~~~t~~ela~~l--------~is~~tvs~~l~~Le~~Gli~r~~~ 101 (162)
T 3cjn_A 56 RALAILSAKDGLPIGTLGIFA--------VVEQSTLSRALDGLQADGLVRREVD 101 (162)
T ss_dssp HHHHHHHHSCSEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHCCCCCHHHHHHHH--------CCChhHHHHHHHHHHHCCCEEecCC
Confidence 455566666677888887765 3678899999999999999998764
No 382
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=49.55 E-value=50 Score=25.31 Aligned_cols=53 Identities=9% Similarity=0.116 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEe
Q 025493 124 EFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVK 184 (252)
Q Consensus 124 efV~~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~ 184 (252)
...+.+-+.++.+|...+..|..++.+.+. ++..-|.+.|+.|+-.|.|++..
T Consensus 36 ~~~~~~~~~i~~~l~~~~~~~~~~la~~l~--------vs~~tvs~~l~~Le~~Glv~r~~ 88 (155)
T 2h09_A 36 ELIDDYVELISDLIREVGEARQVDMAARLG--------VSQPTVAKMLKRLATMGLIEMIP 88 (155)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHT--------SCHHHHHHHHHHHHHTTCEEEET
T ss_pred HHHHHHHHHHHHHHHhCCCcCHHHHHHHhC--------cCHHHHHHHHHHHHHCCCEEEec
Confidence 345566666777777778889999988763 56788999999999999998764
No 383
>1xb4_A VPS25, hypothetical 23.6 kDa protein in YUH1-URA8 intergenic region; winged helix, unknown function; 3.10A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_B 1u5t_C
Probab=49.53 E-value=89 Score=26.56 Aligned_cols=99 Identities=10% Similarity=0.075 Sum_probs=69.0
Q ss_pred CCChHHHHHHHHHHHhcCCeeeeecccc-----CCeeeEEecccccCCCccCCccccCCcCCHHHHHHHHHHHHHHhhhC
Q 025493 66 NLPDNIVTKSIKSLQNKSLIKEVVNIHN-----KGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKL 140 (252)
Q Consensus 66 ~l~~~~l~k~lK~Le~k~lIK~vksv~~-----~~rK~YmL~~lePs~eiTGG~wy~d~e~D~efV~~l~~~~~~~i~~~ 140 (252)
.|+...+..+|..|..+|...-+..=+. ++.+.+++ |++ .+..-..+++|+...
T Consensus 84 rLs~e~~~~Il~~Lv~~g~aew~d~~~~~~~~~~k~~~~I~-------------Wrt--------p~EWa~~I~~Wv~~t 142 (202)
T 1xb4_A 84 SVSQVFIDEIWSQMTKEGKCLPIDQSGRRSSNTTTTRYFIL-------------WKS--------LDSWASLILQWFEDS 142 (202)
T ss_dssp ECCHHHHHHHHHHHHHTTSEEEESSSSBCC--CCCCEEEEC-------------SSC--------HHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHhcCCeEEeCCCCcccccccCceEEEE-------------eCC--------HHHHHHHHHHHHHhc
Confidence 5788899999999999887766643210 02345555 555 678889999999865
Q ss_pred C----CCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 141 K----VATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 141 ~----~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
+ ..|+-||++.=...+-.=-.|.++-+...|++|+-.||.+-...
T Consensus 143 G~~~sV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~GKaqi~~~ 191 (202)
T 1xb4_A 143 GKLNQVITLYELSEGDETVNWEFHRMPESLLYYCLKPLCDRNRATMLKD 191 (202)
T ss_dssp SCTTSCEEHHHHC--CCSCCSTTTTCCHHHHHHHHHHHHGGGCCEEEEC
T ss_pred CCcCcEEEeehcccCCCCCCccccCCCHHHHHHHHHHHHHcCCEEEeec
Confidence 4 78888887654332211124778889999999999999987763
No 384
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=49.52 E-value=5.2 Score=30.94 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=32.0
Q ss_pred cHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEE
Q 025493 55 WTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLM 100 (252)
Q Consensus 55 w~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~Ym 100 (252)
..++|..+. ++..+.|.++|+.|+..|+|... +++-.|+
T Consensus 37 s~~~La~~~--~vSr~tvr~Al~~L~~~G~i~~~-----~~~G~~V 75 (126)
T 3ic7_A 37 SVREYASIV--EVNANTVMRSYEYLQSQEVIYNK-----RGIGFFV 75 (126)
T ss_dssp CTTTTTTCC---CCSGGGHHHHHHHHTTTSEEEE-----TTTEEEE
T ss_pred CHHHHHHHH--CcCHHHHHHHHHHHHHCCcEEEE-----cCCccEE
Confidence 567899999 99999999999999999999886 3454554
No 385
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=49.20 E-value=61 Score=25.91 Aligned_cols=69 Identities=7% Similarity=-0.017 Sum_probs=50.2
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeCCCCCcccccCCcceeecccCC
Q 025493 133 CLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKG 207 (252)
Q Consensus 133 ~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~g~~~f~~~~~g~~~YR~~~~~ 207 (252)
|+..|.. +..+--+|.+.|.+.. -...++..-|-.+|+.|+-+|.|+.......+ ....++.|+++...
T Consensus 49 IL~lL~~-~p~~GYeI~k~l~~~~-~~~~is~gtLYp~L~rLE~~GlI~~~~~~~~~----~g~~rk~Y~LT~~G 117 (148)
T 2zfw_A 49 VLAVLRH-EDSYGTELIQHLETHW-PNYRLSDTVLYTALKFLEDEQIISGYWKKVEG----RGRPRRMYQLAQAN 117 (148)
T ss_dssp HHHHHTT-CCEEHHHHHHHHHHHC-TTEECCSHHHHHHHHHHHHTSSEEEECCCCTT----SSCCCCEEEESSSS
T ss_pred HHHHHHh-CCCcHHHHHHHHHHHc-CCCCCChhHHHHHHHHHHHCCCEEEEeeccCC----CCCCcEEEEECHHH
Confidence 5556654 5677889999998765 35689999999999999999999986532100 02346789887654
No 386
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=49.05 E-value=85 Score=24.73 Aligned_cols=40 Identities=8% Similarity=0.080 Sum_probs=28.5
Q ss_pred cccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeE
Q 025493 53 GIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHL 99 (252)
Q Consensus 53 GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~Y 99 (252)
...+.++.+.+ |++..+| ..-|+.|||++++--. .+.+.|
T Consensus 4 ~~tI~evA~~~--Gvs~~tL----R~ye~~GLl~p~~r~~-~g~R~Y 43 (146)
T 3hh0_A 4 AWLISEFASVG--DVTVRAL----RYYDKINLLKPSDYTE-GGHRLY 43 (146)
T ss_dssp CBCHHHHHHHH--TCCHHHH----HHHHHTTSSCCSEECT-TSCEEB
T ss_pred CCcHHHHHHHH--CcCHHHH----HHHHHCCCCCCCeECC-CCCEee
Confidence 45678888999 8987765 5779999998864322 355555
No 387
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=49.03 E-value=25 Score=26.60 Aligned_cols=45 Identities=11% Similarity=0.194 Sum_probs=34.1
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 133 CLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 133 ~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
++.+|...+..|..+|++.+ .++..-|..+|+.|+-.|.|++...
T Consensus 42 iL~~l~~~~~~t~~ela~~l--------~~s~~tvs~~l~~Le~~glv~r~~~ 86 (155)
T 1s3j_A 42 VLASLKKHGSLKVSEIAERM--------EVKPSAVTLMADRLEQKNLIARTHN 86 (155)
T ss_dssp HHHHHHHHSEEEHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHcCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEeecCC
Confidence 44455555566777777665 4678899999999999999998764
No 388
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=48.91 E-value=37 Score=27.44 Aligned_cols=45 Identities=22% Similarity=0.412 Sum_probs=38.1
Q ss_pred CCCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhc
Q 025493 31 SDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNK 82 (252)
Q Consensus 31 ~~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k 82 (252)
...||+-|+.|+.++.+ |...++|-.++ ++..++|...++.|-+|
T Consensus 147 ~~~LT~rE~~vL~~l~~-----g~s~~eIa~~l--~is~~TV~~hi~~l~~K 191 (225)
T 3c3w_A 147 LSGLTDQERTLLGLLSE-----GLTNKQIADRM--FLAEKTVKNYVSRLLAK 191 (225)
T ss_dssp TTTSCHHHHHHHHHHHT-----TCCHHHHHHHH--TCCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHC-----CCCHHHHHHHh--CCCHHHHHHHHHHHHHH
Confidence 45799999999999987 58899999999 99999888877777543
No 389
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=48.90 E-value=31 Score=23.99 Aligned_cols=54 Identities=11% Similarity=-0.006 Sum_probs=41.7
Q ss_pred CcCCHHHHHHHHHHHHHHhh-hCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhc
Q 025493 119 GSLDTEFIKVVKSQCLKQII-KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLD 177 (252)
Q Consensus 119 ~e~D~efV~~l~~~~~~~i~-~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyD 177 (252)
.++..+.++.+++....|=. ..+..+.+|+...++..| ++.++++.+++.+-.|
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g-----~~~~~~~~~~~~~D~d 73 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELR-----VRPADAEAVFQRLDAD 73 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTT-----CCHHHHHHHHHHHCTT
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcC-----cCHHHHHHHHHHhCCC
Confidence 45667777787776555533 457999999999999987 5789999999887544
No 390
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=48.84 E-value=25 Score=29.26 Aligned_cols=44 Identities=14% Similarity=0.092 Sum_probs=37.6
Q ss_pred CCCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHh
Q 025493 31 SDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQN 81 (252)
Q Consensus 31 ~~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~ 81 (252)
...||+.|+.|+.++. .|...++|...+ ++..++|...++.+-+
T Consensus 171 ~~~Lt~~e~~vl~~~~-----~g~s~~eIa~~l--~is~~tV~~~~~~~~~ 214 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIA-----VGKTMEEIADVE--GVKYNSVRVKLREAMK 214 (234)
T ss_dssp CCCCCHHHHHHHHHHT-----TTCCHHHHHHHH--TCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-----cCCCHHHHHHHH--CcCHHHHHHHHHHHHH
Confidence 4579999999998864 488999999999 9999999888877644
No 391
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=48.34 E-value=80 Score=23.30 Aligned_cols=98 Identities=14% Similarity=0.156 Sum_probs=63.7
Q ss_pred CCCChHHHHH-HHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEecccccCCCc
Q 025493 32 DSLTDHERLI-YDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDI 110 (252)
Q Consensus 32 ~~l~~~e~~v-y~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~~lePs~ei 110 (252)
..++.+++.. ..+. + .|...++|.+.+ +++.++|.+.++.....|..+ +
T Consensus 5 ~~~s~~~r~~i~~~~-~----~G~s~~~ia~~l--gis~~Tv~r~~~~~~~~g~~~-------------------~---- 54 (141)
T 1u78_A 5 SALSDTERAQLDVMK-L----LNVSLHEMSRKI--SRSRHCIRVYLKDPVSYGTSK-------------------R---- 54 (141)
T ss_dssp CCCCHHHHHHHHHHH-H----TTCCHHHHHHHH--TCCHHHHHHHHHSGGGTTCCC-------------------C----
T ss_pred ccCCHHHHHHHHHHH-H----cCCCHHHHHHHH--CcCHHHHHHHHHcccccCCcC-------------------C----
Confidence 3577776532 2222 3 468899999999 999999999999876544211 0
Q ss_pred cCCccccCCcCCHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHH
Q 025493 111 SGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAV 174 (252)
Q Consensus 111 TGG~wy~d~e~D~efV~~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tL 174 (252)
.|.+ ..++.++...+.+. ...+..|+.+|...+ | +.+|..-|..+|..+
T Consensus 55 ~gr~----~~l~~~~~~~i~~~-----~~~~~~s~~~i~~~l---g---~~~s~~tV~r~l~~~ 103 (141)
T 1u78_A 55 APRR----KALSVRDERNVIRA-----ASNSCKTARDIRNEL---Q---LSASKRTILNVIKRS 103 (141)
T ss_dssp CCCC----CSSCHHHHHHHHHH-----HHHCCCCHHHHHHHT---T---CCSCHHHHHHHHHHT
T ss_pred CCCC----CcCCHHHHHHHHHH-----HhCCCCCHHHHHHHH---C---CCccHHHHHHHHHHC
Confidence 2221 24566655444433 233457889998877 4 357888888888764
No 392
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=48.04 E-value=75 Score=22.92 Aligned_cols=56 Identities=14% Similarity=0.130 Sum_probs=43.5
Q ss_pred CcCCHHHHHHHHHHHHHHh-hhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhc
Q 025493 119 GSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLD 177 (252)
Q Consensus 119 ~e~D~efV~~l~~~~~~~i-~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyD 177 (252)
..|..+-++.|++....+= ...+..|.+|+..+++..|. .++.++++.+++.+-.|
T Consensus 3 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~---~~~~~~~~~l~~~~d~~ 59 (153)
T 3ox6_A 3 RSLRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGY---MPTEMELIELSQQINMN 59 (153)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHTTC---CCCHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCC---CCCHHHHHHHHHHhCCC
Confidence 3566677778877766653 35689999999999999884 67889999998887654
No 393
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=47.93 E-value=54 Score=23.78 Aligned_cols=47 Identities=9% Similarity=0.219 Sum_probs=35.0
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 130 KSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 130 ~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
+..++.+|. .+..|+.||++.+ .++..-|.+.|+.|+-.|.|++.+.
T Consensus 28 r~~IL~~L~-~~~~~~~ela~~l--------~is~stvs~~L~~L~~~Glv~~~~~ 74 (106)
T 1r1u_A 28 RIRIMELLS-VSEASVGHISHQL--------NLSQSNVSHQLKLLKSVHLVKAKRQ 74 (106)
T ss_dssp HHHHHHHHH-HCCBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHH-hCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 345566665 4556777777665 2578889999999999999998763
No 394
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=47.75 E-value=44 Score=23.65 Aligned_cols=42 Identities=14% Similarity=0.202 Sum_probs=34.2
Q ss_pred CCCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHH
Q 025493 31 SDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKS 78 (252)
Q Consensus 31 ~~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~ 78 (252)
+..|++.++.|+.+..- .|...++|...+ |++.+.|.+.+..
T Consensus 35 l~~L~~~~r~vl~l~~~----~g~s~~eIA~~l--gis~~tV~~~l~r 76 (92)
T 3hug_A 35 LAQLSAEHRAVIQRSYY----RGWSTAQIATDL--GIAEGTVKSRLHY 76 (92)
T ss_dssp HHTSCHHHHHHHHHHHT----SCCCHHHHHHHH--TSCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH----cCCCHHHHHHHH--CcCHHHHHHHHHH
Confidence 45799999999988655 578999999999 9999888665544
No 395
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=47.73 E-value=39 Score=22.70 Aligned_cols=54 Identities=11% Similarity=0.072 Sum_probs=39.3
Q ss_pred cCCHHHHHHHHHHHHHHhh-hCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhc
Q 025493 120 SLDTEFIKVVKSQCLKQII-KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLD 177 (252)
Q Consensus 120 e~D~efV~~l~~~~~~~i~-~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyD 177 (252)
++..+-++.++.....|=. ..++.|.+|+...++..| .++.++++.+++.+=.|
T Consensus 4 ~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g----~~~~~~~~~~~~~~D~~ 58 (86)
T 2opo_A 4 EDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLG----SVTPDEVRRMMAEIDTD 58 (86)
T ss_dssp --CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTT----TCCHHHHHHHHHHHCTT
T ss_pred cCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcC----CCCHHHHHHHHHHhCCC
Confidence 4455566666666554422 457899999999999887 67899999999987544
No 396
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=47.13 E-value=19 Score=30.75 Aligned_cols=33 Identities=9% Similarity=0.262 Sum_probs=30.8
Q ss_pred cHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeec
Q 025493 55 WTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVN 90 (252)
Q Consensus 55 w~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vks 90 (252)
..++|..+. +....+|.++|+.|++.|+|.. +.
T Consensus 38 se~~La~~~--~vSr~tvr~Al~~L~~~G~i~~-~g 70 (248)
T 3f8m_A 38 AEREIAEQF--EVARETVRQALRELLIDGRVER-RG 70 (248)
T ss_dssp CHHHHHHHT--TCCHHHHHHHHHHHHHTTSEEE-ET
T ss_pred CHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEe-CC
Confidence 679999999 9999999999999999999988 54
No 397
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=47.03 E-value=4.8 Score=32.10 Aligned_cols=50 Identities=14% Similarity=0.303 Sum_probs=40.8
Q ss_pred CCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeee
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKE 87 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~ 87 (252)
.++.-+..|...+.. .+ -+..++|..+. |+..+.+.++|+.|+..|+|+.
T Consensus 10 ~~d~l~~~Il~~l~~-~~--~ls~~eLa~~l--gvSr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 10 DLDRIDRNILNELQK-DG--RISNVELSKRV--GLSPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp -CCSHHHHHHHHHHH-CS--SCCTTGGGTSS--SCCTTTSSSTHHHHHHHTSEEE
T ss_pred chhHHHHHHHHHHHh-CC--CCCHHHHHHHH--CcCHHHHHHHHHHHHHCCcEEE
Confidence 366667777776555 32 36888999999 9999999999999999999986
No 398
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=47.03 E-value=21 Score=30.15 Aligned_cols=47 Identities=13% Similarity=0.300 Sum_probs=38.4
Q ss_pred HHHHHHHhh------cCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeee
Q 025493 40 LIYDVIRSN------KQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEV 88 (252)
Q Consensus 40 ~vy~~I~~~------ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~v 88 (252)
.||+.|++. .-+.-+-.++|..+. |+..+.|.++|+.|+..|||...
T Consensus 30 ~v~~~L~~~I~~g~l~pG~~L~e~~La~~l--gVSr~~VReAL~~L~~~Glv~~~ 82 (237)
T 3c7j_A 30 VIEEKLRNAIIDGSLPSGTALRQQELATLF--GVSRMPVREALRQLEAQSLLRVE 82 (237)
T ss_dssp HHHHHHHHHHHTSSSCTTCBCCHHHHHHHH--TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhCCCCCcCeeCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEEe
Confidence 488777651 122346789999999 99999999999999999999886
No 399
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=47.02 E-value=57 Score=24.01 Aligned_cols=56 Identities=13% Similarity=0.063 Sum_probs=44.6
Q ss_pred CcCCHHHHHHHHHHHHHHh-hhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhc
Q 025493 119 GSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLD 177 (252)
Q Consensus 119 ~e~D~efV~~l~~~~~~~i-~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyD 177 (252)
..+..+-++.|++....+= ...+.+|.+|+..+++..| ..++.++++.+++.+--|
T Consensus 15 ~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~---~~~~~~~~~~l~~~~d~~ 71 (161)
T 3fwb_A 15 SELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALG---FELPKREILDLIDEYDSE 71 (161)
T ss_dssp TTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHHTT---CCCCHHHHHHHHHHHCTT
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcC---CCCCHHHHHHHHHHhCcC
Confidence 4678888888888776663 3568999999999999987 468899999998877444
No 400
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=46.73 E-value=79 Score=22.97 Aligned_cols=60 Identities=15% Similarity=0.152 Sum_probs=43.0
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeCCCCCcccccCCcceeecccC
Q 025493 132 QCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSK 206 (252)
Q Consensus 132 ~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~g~~~f~~~~~g~~~YR~~~~ 206 (252)
.++..|. .+..+..||.+.+. .++..-+-+.|+.|+-+|.|++...... ..+..|+++..
T Consensus 18 ~IL~~L~-~~~~~~~eLa~~l~-------~is~~tls~~L~~Le~~GlI~r~~~~~d-------~r~~~y~LT~~ 77 (107)
T 2hzt_A 18 VILXHLT-HGKKRTSELKRLMP-------NITQKMLTQQLRELEADGVINRIVYNQV-------PPKVEYELSEY 77 (107)
T ss_dssp HHHHHHT-TCCBCHHHHHHHCT-------TSCHHHHHHHHHHHHHTTSEEEEEECSS-------SCEEEEEECTT
T ss_pred HHHHHHH-hCCCCHHHHHHHhc-------CCCHHHHHHHHHHHHHCCCEEEeecCCC-------CCeEEEEECcc
Confidence 3556665 57788999987641 4678899999999999999998764321 12356776543
No 401
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=46.52 E-value=69 Score=22.80 Aligned_cols=46 Identities=4% Similarity=0.145 Sum_probs=34.9
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEe
Q 025493 130 KSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVK 184 (252)
Q Consensus 130 ~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~ 184 (252)
+..++.+|.. +..|+.||.+.+ | ++..-|..-|+.|.-.|.|++.+
T Consensus 25 r~~Il~~L~~-~~~~~~ela~~l---~-----is~~tvs~~L~~L~~~Glv~~~~ 70 (102)
T 3pqk_A 25 RLMLVCTLVE-GEFSVGELEQQI---G-----IGQPTLSQQLGVLRESGIVETRR 70 (102)
T ss_dssp HHHHHHHHHT-CCBCHHHHHHHH---T-----CCTTHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHh-CCCCHHHHHHHH---C-----cCHHHHHHHHHHHHHCCCeEEEE
Confidence 4456666744 568888888776 3 45667889999999999999765
No 402
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=46.03 E-value=58 Score=22.10 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHHHhh-hCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhc
Q 025493 121 LDTEFIKVVKSQCLKQII-KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLD 177 (252)
Q Consensus 121 ~D~efV~~l~~~~~~~i~-~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyD 177 (252)
+..+-++.++.....|=. ..+..|.+|+...++..|. .++.++++.+++.+-.|
T Consensus 14 l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~---~~~~~~~~~l~~~~D~~ 68 (90)
T 1avs_A 14 LSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQ---NPTKEELDAIIEEVDED 68 (90)
T ss_dssp BCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTC---CCCHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCC---CCCHHHHHHHHHHhCCC
Confidence 556666777666555532 4578999999999999874 68899999999887544
No 403
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=45.63 E-value=32 Score=28.99 Aligned_cols=47 Identities=15% Similarity=0.257 Sum_probs=37.7
Q ss_pred HHHHHHHh------hcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeee
Q 025493 40 LIYDVIRS------NKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEV 88 (252)
Q Consensus 40 ~vy~~I~~------~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~v 88 (252)
.||+.|++ ..-+.=+-.++|..+. |+..+.|..+|+.|+..|||...
T Consensus 32 ~v~~~l~~~I~~g~l~pG~~L~e~~La~~l--gVSRtpVREAL~~L~~eGlv~~~ 84 (239)
T 2hs5_A 32 RVAGILRDAIIDGTFRPGARLSEPDICAAL--DVSRNTVREAFQILIEDRLVAHE 84 (239)
T ss_dssp HHHHHHHHHHHHTSSCTTCEECHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCCcCEeCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEEe
Confidence 56666654 0123346889999999 99999999999999999999886
No 404
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=45.61 E-value=30 Score=25.53 Aligned_cols=47 Identities=4% Similarity=0.064 Sum_probs=36.7
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 131 SQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 131 ~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
-.++.+|...+..|..+|++.+ .++..-|..+|+.|+-.|.|++...
T Consensus 39 ~~iL~~l~~~~~~t~~ela~~l--------~~s~~~vs~~l~~Le~~glv~r~~~ 85 (142)
T 2fbi_A 39 WRVIRILRQQGEMESYQLANQA--------CILRPSMTGVLARLERDGIVRRWKA 85 (142)
T ss_dssp HHHHHHHHHHCSEEHHHHHHHT--------TCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHH--------CCCHhHHHHHHHHHHHCCCEEeecC
Confidence 3456666666677888887764 3678899999999999999998764
No 405
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=45.61 E-value=24 Score=27.21 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEe
Q 025493 128 VVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVK 184 (252)
Q Consensus 128 ~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~ 184 (252)
.+...++..|+..+..|..+|++.+ .+|..-+.+.|+.|+-.|.|++..
T Consensus 3 ~~~~~il~~L~~~~~~~~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~~ 51 (150)
T 2pn6_A 3 EIDLRILKILQYNAKYSLDEIAREI--------RIPKATLSYRIKKLEKDGVIKGYY 51 (150)
T ss_dssp HHHHHHHHHHTTCTTSCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSSCCCC
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCcEEEEE
Confidence 4567888999988899999999876 378899999999999999998754
No 406
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=45.61 E-value=62 Score=27.80 Aligned_cols=60 Identities=18% Similarity=0.133 Sum_probs=42.3
Q ss_pred CCCCChHHHHHHHHHHhh-cCCCcccHHHHHH-------Hhhc-CCChHHHHHHHHHHHhcCCeeeeec
Q 025493 31 SDSLTDHERLIYDVIRSN-KQDMGIWTRDMKR-------ELKV-NLPDNIVTKSIKSLQNKSLIKEVVN 90 (252)
Q Consensus 31 ~~~l~~~e~~vy~~I~~~-ag~~GIw~~dik~-------~~~~-~l~~~~l~k~lK~Le~k~lIK~vks 90 (252)
+.+|+.+++.++..|... .|+..+-.+++-+ ..+. .+....+..+++.|+..|+|.....
T Consensus 285 ~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~ 353 (387)
T 2v1u_A 285 VRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLGLEHVTLRRVSGIISELDMLGIVKSRVV 353 (387)
T ss_dssp HHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCeEEEee
Confidence 367899998888777631 3666676664333 3311 3466899999999999999998653
No 407
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=45.27 E-value=17 Score=26.77 Aligned_cols=51 Identities=16% Similarity=0.220 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhhC----CCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 128 VVKSQCLKQIIKL----KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 128 ~l~~~~~~~i~~~----~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
.+++.|+.|+... +--=..|++.-+- .....+|..+++.||-+|+++=-.+
T Consensus 3 e~K~~Ile~l~~k~~~KskfYf~D~~k~~P-------~~k~r~vKK~~~~LV~Eg~leywSS 57 (78)
T 1ucr_A 3 EAKQKVVDFLNSKSGSKSKFYFNDFTDLFP-------DMKQREVKKILTALVNDEVLEYWSS 57 (78)
T ss_dssp HHHHHHHHHHSSHHHHSSCEEHHHHHHHCT-------TSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHhcccccccchHHHHHHHcc-------ccCHHHHHHHHHHHHhcCceEEEec
Confidence 5677888888753 1111345554222 4568999999999999999996554
No 408
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=44.96 E-value=26 Score=25.82 Aligned_cols=48 Identities=8% Similarity=0.191 Sum_probs=36.5
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeC
Q 025493 131 SQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSN 186 (252)
Q Consensus 131 ~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~ 186 (252)
-.++.+|...+..|..+|++.+ .++..-+..+|+.|+-.|.|++....
T Consensus 36 ~~iL~~l~~~~~~~~~ela~~l--------~~~~~tvs~~l~~L~~~gli~r~~~~ 83 (139)
T 3bja_A 36 FGVIQVLAKSGKVSMSKLIENM--------GCVPSNMTTMIQRMKRDGYVMTEKNP 83 (139)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHC--------SSCCTTHHHHHHHHHHTTSEEEEECS
T ss_pred HHHHHHHHHcCCcCHHHHHHHH--------CCChhHHHHHHHHHHHCCCeeeccCC
Confidence 3456666667777888887754 35677889999999999999987643
No 409
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=44.94 E-value=78 Score=23.26 Aligned_cols=36 Identities=17% Similarity=0.347 Sum_probs=30.4
Q ss_pred hCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhc
Q 025493 139 KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLD 177 (252)
Q Consensus 139 ~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyD 177 (252)
..++.|.+|+..++...| ..++.++++.+++.+--|
T Consensus 96 ~~G~I~~~el~~~l~~~g---~~~~~~~~~~~~~~~d~d 131 (148)
T 1exr_A 96 GNGLISAAELRHVMTNLG---EKLTDDEVDEMIREADID 131 (148)
T ss_dssp CSSCBCHHHHHHHHHHTT---CCCCHHHHHHHHHHHCSS
T ss_pred CCCcCCHHHHHHHHHHhC---CCCCHHHHHHHHHHhCCC
Confidence 358999999999999987 368999999999986443
No 410
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=44.90 E-value=39 Score=30.01 Aligned_cols=47 Identities=9% Similarity=0.047 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeee
Q 025493 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKE 87 (252)
Q Consensus 36 ~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~ 87 (252)
+-...|+.++.+ +.-+...+|..++ ++...+|.|.|+.|++.|++..
T Consensus 5 ~r~~~Il~~L~~---~~~~s~~eLa~~l--~vS~~ti~r~l~~L~~~G~~i~ 51 (321)
T 1bia_A 5 TVPLKLIALLAN---GEFHSGEQLGETL--GMSRAAINKHIQTLRDWGVDVF 51 (321)
T ss_dssp HHHHHHHHHHTT---SSCBCHHHHHHHH--TSCHHHHHHHHHHHHHTTCCCE
T ss_pred hHHHHHHHHHHc---CCCcCHHHHHHHH--CCCHHHHHHHHHHHHhCCCcEE
Confidence 344556666643 4569999999999 9999999999999999999854
No 411
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=44.89 E-value=41 Score=25.59 Aligned_cols=46 Identities=11% Similarity=0.122 Sum_probs=33.6
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 132 QCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 132 ~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
.++.+|...+..|..+|++.+ .++..-|..+|+.|+-.|.|++...
T Consensus 53 ~iL~~l~~~~~~t~~ela~~l--------~is~~tvs~~l~~Le~~glv~r~~~ 98 (162)
T 2fa5_A 53 RVITILALYPGSSASEVSDRT--------AMDKVAVSRAVARLLERGFIRRETH 98 (162)
T ss_dssp HHHHHHHHSTTCCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEC---
T ss_pred HHHHHHHhCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEeeecC
Confidence 345555566777777777765 3678899999999999999997653
No 412
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=44.60 E-value=38 Score=31.56 Aligned_cols=63 Identities=17% Similarity=0.176 Sum_probs=48.8
Q ss_pred CCCCCCCChHHHHHHHHHHhhcCCC-cccHHHHHHHhhcCCC--hHHHHHHHHHHHhcCCeeeeeccc
Q 025493 28 NAPSDSLTDHERLIYDVIRSNKQDM-GIWTRDMKRELKVNLP--DNIVTKSIKSLQNKSLIKEVVNIH 92 (252)
Q Consensus 28 ~~~~~~l~~~e~~vy~~I~~~ag~~-GIw~~dik~~~~~~l~--~~~l~k~lK~Le~k~lIK~vksv~ 92 (252)
+..++-|+.++..|+..||....|. =+-+..|.+-+ +|. ...+.++|+.|-..+||..+++..
T Consensus 6 ~~~~r~l~~~d~rvL~ave~g~~~he~vp~~~i~~~~--~l~~~~~~~~~~l~~l~~~~lv~~~~~~~ 71 (397)
T 4gyi_A 6 TRAMRHLTAEDWRVLTAVEMGSKNHEIVPTPLIEKIA--RLRGGSSGVHKSIATLAKAGLIARMKEAK 71 (397)
T ss_dssp CSGGGTCCHHHHHHHHHHHHHTTTCSSEEHHHHHHHH--CSSSCCCSHHHHHHHHHHTTSEEEEECSS
T ss_pred HHHHhhcCHHHHHHHHHHHhccCCcccccHHHHHHHh--CCCCchHhHHHHHHhhhhcCceeeccCCC
Confidence 4467889999999999999833332 23346678888 885 457999999999999998876654
No 413
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=44.47 E-value=54 Score=24.89 Aligned_cols=44 Identities=30% Similarity=0.330 Sum_probs=31.9
Q ss_pred CCChHHHHH----HHHHHhhcCCCc-ccHHHHHHHhhcCCChHHHHHHHHHHH
Q 025493 33 SLTDHERLI----YDVIRSNKQDMG-IWTRDMKRELKVNLPDNIVTKSIKSLQ 80 (252)
Q Consensus 33 ~l~~~e~~v----y~~I~~~ag~~G-Iw~~dik~~~~~~l~~~~l~k~lK~Le 80 (252)
-||+.|+.+ |.+... - ..| ..+++|.+++ |+....|+|+=+.|.
T Consensus 35 lLT~~Er~~l~~R~~l~~~-L-~~ge~TQREIA~~l--GiS~stISRi~r~L~ 83 (101)
T 1jhg_A 35 MLTPDEREALGTRVRIIEE-L-LRGEMSQRELKNEL--GAGIATITRGSNSLK 83 (101)
T ss_dssp HSCHHHHHHHHHHHHHHHH-H-HHCCSCHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHH-H-HcCCcCHHHHHHHH--CCChhhhhHHHHHHH
Confidence 488888855 333332 1 235 9999999999 999999998855553
No 414
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=44.39 E-value=47 Score=22.14 Aligned_cols=55 Identities=25% Similarity=0.161 Sum_probs=41.4
Q ss_pred cCCHHHHHHHHHHHHHHhh-hCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhc
Q 025493 120 SLDTEFIKVVKSQCLKQII-KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLD 177 (252)
Q Consensus 120 e~D~efV~~l~~~~~~~i~-~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyD 177 (252)
+|..+-++.+++....|=. ..+..+.+|+...++..| ..++.++++.+++.+-.|
T Consensus 7 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g---~~~~~~~~~~~~~~~d~~ 62 (85)
T 2ktg_A 7 VLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALG---ANPTKQKISEIVKDYDKD 62 (85)
T ss_dssp SSSHHHHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTS---SCCCHHHHHHHHHHHSSS
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhC---CCCCHHHHHHHHHHhCCC
Confidence 4566667777666554422 357899999999999887 468899999999987544
No 415
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=44.26 E-value=51 Score=24.28 Aligned_cols=47 Identities=9% Similarity=0.194 Sum_probs=37.3
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeC
Q 025493 132 QCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSN 186 (252)
Q Consensus 132 ~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~ 186 (252)
.++.+|.. +..|..||.+.+. .++..-+-..|+.|+-+|.|++....
T Consensus 26 ~IL~~L~~-~~~~~~eLa~~l~-------~is~~tvs~~L~~Le~~GlI~r~~~~ 72 (112)
T 1z7u_A 26 SLMDELFQ-GTKRNGELMRALD-------GITQRVLTDRLREMEKDGLVHRESFN 72 (112)
T ss_dssp HHHHHHHH-SCBCHHHHHHHST-------TCCHHHHHHHHHHHHHHTSEEEEEEC
T ss_pred HHHHHHHh-CCCCHHHHHHHhc-------cCCHHHHHHHHHHHHHCCCEEEeecC
Confidence 45556654 6789999988762 47788999999999999999987653
No 416
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=44.25 E-value=20 Score=28.49 Aligned_cols=58 Identities=14% Similarity=0.085 Sum_probs=44.1
Q ss_pred CcCCHHHHHHHHHHHHHH-hhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeE
Q 025493 119 GSLDTEFIKVVKSQCLKQ-IIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIM 181 (252)
Q Consensus 119 ~e~D~efV~~l~~~~~~~-i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE 181 (252)
..|..+-++.|++....| ....+.+|.+|+..+++..| ..++.+++..++... ||.|.
T Consensus 49 ~~ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~lg---~~~~~~~~~~l~~~~--~g~i~ 107 (196)
T 3dtp_E 49 AMFTQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDSLG---RLCTEQELDSMVAEA--PGPIN 107 (196)
T ss_dssp CSSCTTTHHHHHHHHHHHCCSCSSBCCHHHHHHHHHTTS---CCCCHHHHHHHHTTS--SSCCB
T ss_pred hhCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhC---CCCCHHHHHHHHHHc--cCCCc
Confidence 345666677777776655 23568999999999999988 468899999998876 77653
No 417
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A
Probab=44.10 E-value=71 Score=21.64 Aligned_cols=51 Identities=8% Similarity=0.089 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHh--hhCC-CCCHHHHHHHHHH-----cCCcceecCHHHHHHHHHHHhhcC
Q 025493 125 FIKVVKSQCLKQI--IKLK-VATLEGISDSIKR-----SGAFKVDLTKQQIEEIVRAVVLDN 178 (252)
Q Consensus 125 fV~~l~~~~~~~i--~~~~-~~T~~~I~~~i~~-----~~i~~~~Ls~~di~~IL~tLVyDg 178 (252)
-++.++.....|= ...+ ..+.+|+...++. .| ..++.++++.+++.+=.|+
T Consensus 7 ~~~~l~~~F~~~D~~d~~G~~I~~~el~~~l~~~~~~~~g---~~~~~~~~~~~~~~~D~d~ 65 (93)
T 1k2h_A 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSSFLD---VQKDADAVDKIMKELDENG 65 (93)
T ss_dssp HHHHHHHHHHHHHTTSSCCSSCCHHHHHHHHHHHTHHHHH---CCCCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcccCCCcCccCHHHHHHHHHHHHHHHhC---CCCCHHHHHHHHHHhCCCC
Confidence 3455666555552 3456 8999999999997 55 4688999999998876543
No 418
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=43.94 E-value=23 Score=25.80 Aligned_cols=54 Identities=13% Similarity=0.178 Sum_probs=39.8
Q ss_pred CcCCHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEE
Q 025493 119 GSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEV 183 (252)
Q Consensus 119 ~e~D~efV~~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v 183 (252)
..|...|++.-... +.+-....|++.+++-+ .|++++++.+|-.|+.||+|...
T Consensus 10 ~~L~~~v~E~nl~~---is~~Y~~Isl~~La~ll--------~ls~~~vE~~ls~mI~~~~l~ak 63 (84)
T 1ufm_A 10 SILDRAVIEHNLLS---ASKLYNNITFEELGALL--------EIPAAKAEKIASQMITEGRMNGF 63 (84)
T ss_dssp CCCCHHHHHHHHHH---HHHSCSEEEHHHHHHHT--------TSCHHHHHHHHHHHHHTTSSCEE
T ss_pred HHHHHHHHHHHHHH---HHHhcCeeeHHHHHHHH--------CcCHHHHHHHHHHHHhCCcEEEE
Confidence 35666776655543 44456667788887765 48899999999999999998743
No 419
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=43.78 E-value=36 Score=30.27 Aligned_cols=43 Identities=12% Similarity=0.156 Sum_probs=38.0
Q ss_pred HHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeee
Q 025493 41 IYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKE 87 (252)
Q Consensus 41 vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~ 87 (252)
|+++|.+ +| .++...+|..++ +++...+.+.|..|...|++.+
T Consensus 40 ifd~L~~-~~-~~~t~~eLA~~~--g~~~~~l~rlLr~l~~~g~l~~ 82 (363)
T 3dp7_A 40 IFQLLSG-KR-EGYTLQEISGRT--GLTRYAAQVLLEASLTIGTILL 82 (363)
T ss_dssp HHHHHHT-CT-TCBCHHHHHHHH--TCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHh-cC-CCCCHHHHHHHh--CcCHHHHHHHHHHHhhCCCeEe
Confidence 6677766 54 479999999999 9999999999999999999976
No 420
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=43.60 E-value=38 Score=25.18 Aligned_cols=58 Identities=10% Similarity=0.024 Sum_probs=38.5
Q ss_pred cCCccccCCcCCHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhc
Q 025493 111 SGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLD 177 (252)
Q Consensus 111 TGG~wy~d~e~D~efV~~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyD 177 (252)
.|+.|- +..+=++.++++-..|=...|+.|.+|+...++++| ++.+++++|++..=.|
T Consensus 3 ~~~~w~----ls~~e~~~~~~~F~~~D~~dG~Is~~el~~~l~~~g-----l~~~el~~i~~~~D~d 60 (106)
T 1eh2_A 3 WGSPWA----VKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSK-----LPVDILGRVWELSDID 60 (106)
T ss_dssp ---CCS----SCHHHHHHHHHHHTTSCCSSSCCBHHHHHHHHHTTT-----CCHHHHHHHHHHHCSS
T ss_pred cCCCCC----CCHHHHHHHHHHHHHhCCCCCeEcHHHHHHHHHHcC-----CCHHHHHHHHHHHcCC
Confidence 355665 333445555554433323578999999999999887 6789999999876554
No 421
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=43.55 E-value=1.2e+02 Score=23.85 Aligned_cols=72 Identities=10% Similarity=0.146 Sum_probs=50.6
Q ss_pred cHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeee--ccccCCeeeEEecccccCCCccCCccccCCcCCHHHHHHHHHH
Q 025493 55 WTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVV--NIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQ 132 (252)
Q Consensus 55 w~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vk--sv~~~~rK~YmL~~lePs~eiTGG~wy~d~e~D~efV~~l~~~ 132 (252)
--..|-..| |||.++++..|++|..-+..-.+. ...+ +--.|+|-+- |-+|.+-|..=.+.
T Consensus 35 nvp~L~~~T--GmPRRTiQd~I~aL~elgI~~~FvQ~G~R~-n~GyY~I~dW--------------G~idk~Wv~~~~~~ 97 (117)
T 3ke2_A 35 NLLSLGKLT--GMPRRTLQDAIASFADIGIEVEFVQDGERH-NAGYYRIRTW--------------GPISSAWMDTHVDE 97 (117)
T ss_dssp CHHHHHHHH--CCCHHHHHHHHHTGGGGTCEEEEECCTTCC-SCCEEEEEEC--------------TTBCHHHHHHHHHH
T ss_pred CHHHHHHHH--CCCHhHHHHHHHHhhhCCeEEEEEeccccC-CCccEEEeec--------------CccCHHHHHHHHHH
Confidence 778899999 999999999999999888766654 3333 3457888554 66787777655444
Q ss_pred HHHHhhhCCCCCHH
Q 025493 133 CLKQIIKLKVATLE 146 (252)
Q Consensus 133 ~~~~i~~~~~~T~~ 146 (252)
+..-| +||...
T Consensus 98 i~~~L---~~~~~~ 108 (117)
T 3ke2_A 98 VKSLL---GVDDAV 108 (117)
T ss_dssp HHHHH---TCCCHH
T ss_pred HHHHh---CCCCcc
Confidence 44443 444443
No 422
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=43.54 E-value=22 Score=29.83 Aligned_cols=79 Identities=9% Similarity=-0.045 Sum_probs=54.2
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeCCCCCcccccCCcceeecccCC
Q 025493 128 VVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKG 207 (252)
Q Consensus 128 ~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~g~~~f~~~~~g~~~YR~~~~~ 207 (252)
..+..++.+|. .+..|+.+|++.+ .++..-|-..|+.|+-.|.|++...... ....+..|++....
T Consensus 15 ~~rl~IL~~L~-~~~~s~~eLa~~l--------~is~stvs~hLk~Le~~GLV~~~~~~~~-----~g~~~~~Y~Lt~~~ 80 (202)
T 2p4w_A 15 ETRRRILFLLT-KRPYFVSELSREL--------GVGQKAVLEHLRILEEAGLIESRVEKIP-----RGRPRKYYMIKKGL 80 (202)
T ss_dssp HHHHHHHHHHH-HSCEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEECCBT-----TBCCCEEEEECTTE
T ss_pred HHHHHHHHHHH-hCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCceEEEeeccC-----CCCceEEEEEChHH
Confidence 34556777775 5678999999888 3788999999999999999998764211 11235678875432
Q ss_pred CCCCCCCCCCcccCCCCCCC
Q 025493 208 GGGGEPKTGSSASVPCGVCP 227 (252)
Q Consensus 208 ~~~~~~~~~~l~~vPCg~CP 227 (252)
...+...+|+.-+
T Consensus 81 -------~~~l~~t~~g~~~ 93 (202)
T 2p4w_A 81 -------RLEILLTPTLFGS 93 (202)
T ss_dssp -------EEEEEEETTEEEE
T ss_pred -------HHHHHHhhhcccc
Confidence 2345566666433
No 423
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=43.47 E-value=31 Score=26.45 Aligned_cols=38 Identities=13% Similarity=0.220 Sum_probs=31.6
Q ss_pred CCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 140 LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 140 ~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
..+||..+|++.+ .++..+|.++|+.|+-.|.|++...
T Consensus 49 ~~~ps~~~LA~~l--------~~s~~~V~~~l~~Le~kGlI~~~~~ 86 (128)
T 2vn2_A 49 VLFPTPAELAERM--------TVSAAECMEMVRRLLQKGMIAIEEH 86 (128)
T ss_dssp CSSCCHHHHHHTS--------SSCHHHHHHHHHHHHHTTSSEECC-
T ss_pred CCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEEeE
Confidence 3569999998753 4789999999999999999998653
No 424
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=43.38 E-value=59 Score=23.65 Aligned_cols=60 Identities=10% Similarity=0.090 Sum_probs=42.3
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeCCCCCcccccCCcceeecccC
Q 025493 132 QCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSK 206 (252)
Q Consensus 132 ~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~g~~~f~~~~~g~~~YR~~~~ 206 (252)
.++..|. .+..+..||.+.+. .++..-+-+.|+.|+-+|.|++...... ..+..|+++..
T Consensus 29 ~IL~~L~-~~~~~~~eL~~~l~-------gis~~~ls~~L~~Le~~GlV~r~~~~~d-------~r~~~y~LT~~ 88 (107)
T 2fsw_A 29 LIIFQIN-RRIIRYGELKRAIP-------GISEKMLIDELKFLCGKGLIKKKQYPEV-------PPRVEYSLTPL 88 (107)
T ss_dssp HHHHHHT-TSCEEHHHHHHHST-------TCCHHHHHHHHHHHHHTTSEEEEEECSS-------SCEEEEEECHH
T ss_pred HHHHHHH-hCCcCHHHHHHHcc-------cCCHHHHHHHHHHHHHCCCEEEeecCCC-------CCeeEEEECcc
Confidence 3555665 66788888887652 2678889999999999999998764321 12355776543
No 425
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=43.34 E-value=39 Score=26.28 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=29.8
Q ss_pred hCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHh
Q 025493 139 KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVV 175 (252)
Q Consensus 139 ~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLV 175 (252)
..|+.|.+++.+.++..| ..++.++++.+++.+-
T Consensus 98 ~~G~I~~~el~~~l~~~g---~~ls~~e~~~l~~~~D 131 (159)
T 3i5g_C 98 GQGLISSAEIRNVLKMLG---ERITEDQCNDIFTFCD 131 (159)
T ss_dssp SSSEECHHHHHHHHHHSS---SCCCHHHHHHHHHHTT
T ss_pred CCCcCcHHHHHHHHHHhC---CCCCHHHHHHHHHHhC
Confidence 468999999999999988 4799999999998764
No 426
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=43.19 E-value=97 Score=22.81 Aligned_cols=70 Identities=6% Similarity=0.055 Sum_probs=43.8
Q ss_pred ccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEecccccCCCccCCccccCCcCCHHHHHHHHHHH
Q 025493 54 IWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQC 133 (252)
Q Consensus 54 Iw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~~lePs~eiTGG~wy~d~e~D~efV~~l~~~~ 133 (252)
..+.++.+.+ |++..+| ..-|+.||+++.+.-. .+.+. |+.+-|+.|+.+.
T Consensus 2 ~~i~e~A~~~--gvs~~tL----R~ye~~Gll~p~~r~~-~g~R~----------------------Y~~~dl~~l~~I~ 52 (108)
T 2vz4_A 2 YSVGQVAGFA--GVTVRTL----HHYDDIGLLVPSERSH-AGHRR----------------------YSDADLDRLQQIL 52 (108)
T ss_dssp BCHHHHHHHH--TCCHHHH----HHHHHHTSSCCSEECS-SCCEE----------------------BCHHHHHHHHHHH
T ss_pred CCHHHHHHHH--CcCHHHH----HHHHHCCCCCCCccCC-CCCee----------------------cCHHHHHHHHHHH
Confidence 4577888889 8887766 4668889998754211 13333 3444455555433
Q ss_pred HHHhhhCCCCCHHHHHHHHHHc
Q 025493 134 LKQIIKLKVATLEGISDSIKRS 155 (252)
Q Consensus 134 ~~~i~~~~~~T~~~I~~~i~~~ 155 (252)
. ++. ...|+++|.+++...
T Consensus 53 ~--lr~-~G~sl~~I~~~l~~~ 71 (108)
T 2vz4_A 53 F--YRE-LGFPLDEVAALLDDP 71 (108)
T ss_dssp H--HHH-TTCCHHHHHHHHTC-
T ss_pred H--HHH-CCCCHHHHHHHHhCC
Confidence 2 334 367899999999753
No 427
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=43.13 E-value=60 Score=31.86 Aligned_cols=94 Identities=14% Similarity=0.165 Sum_probs=68.0
Q ss_pred CCChHHHHHHHHHHHhcCCeee-eeccccCCeeeEEecccccCCCccCCccccCCcCCHHHHHHHHHHHHHHhhhCCCCC
Q 025493 66 NLPDNIVTKSIKSLQNKSLIKE-VVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVAT 144 (252)
Q Consensus 66 ~l~~~~l~k~lK~Le~k~lIK~-vksv~~~~rK~YmL~~lePs~eiTGG~wy~d~e~D~efV~~l~~~~~~~i~~~~~~T 144 (252)
-+.+..+.++++.|+..|+=-. +..+.. + ++.+ ..|. + +.....++.+++..+++|
T Consensus 454 lISp~Dll~A~~~le~Lg~~~~~L~~~~s--g-vlVv--s~~~-----------------~-~~~~~~il~l~~~~g~vT 510 (566)
T 1w7p_D 454 LISPMEMREACERFEHLGLNELKLVKVNK--R-ILCV--TSEK-----------------F-DVVKEKLVDLIGDNPGSD 510 (566)
T ss_dssp CCCHHHHHHHHTTGGGGTCTTCEEEECSS--S-CEEE--ESSC-----------------H-HHHHHHHHHHHTTSTTCC
T ss_pred ccCHHHHHHHHHHHHHcCCCeEEEEEECC--E-EEEE--cCCC-----------------c-hHHHHHHHHHHHhcCCcC
Confidence 5889999999999999887544 555542 2 3333 2221 1 466777777888899999
Q ss_pred HHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEE
Q 025493 145 LEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEV 183 (252)
Q Consensus 145 ~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v 183 (252)
+.++++-+.... .+-..+..=.++.|+.++-+|.+-+=
T Consensus 511 ~~~la~~lg~~~-~~~~Ws~~~A~e~L~~~e~eG~l~rD 548 (566)
T 1w7p_D 511 LLRLTQILSSNN-SKSNWTLGILMEVLQNCVDEGDLLID 548 (566)
T ss_dssp HHHHHHHHSCSS-SCCCBCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHhCCcc-ccCcccHHHHHHHHHHHHHcCCEEEE
Confidence 999998887221 22346788889999999999999754
No 428
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=42.87 E-value=41 Score=23.59 Aligned_cols=34 Identities=18% Similarity=0.140 Sum_probs=28.5
Q ss_pred hCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHh
Q 025493 139 KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVV 175 (252)
Q Consensus 139 ~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLV 175 (252)
..++++.+|+...++..| ..++.++++.++..+-
T Consensus 37 ~~G~i~~~el~~~l~~~g---~~~~~~e~~~l~~~~d 70 (105)
T 1wlz_A 37 KTNTISREEFRAICNRRV---QILTDEQFDRLWNEMP 70 (105)
T ss_dssp CSSCBCHHHHHHHHHHHT---CCCCHHHHHHHHTTSC
T ss_pred CCCcCcHHHHHHHHHHhC---CCCCHHHHHHHHHHcC
Confidence 358999999999999987 4589999999987654
No 429
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=42.85 E-value=61 Score=24.18 Aligned_cols=45 Identities=11% Similarity=0.051 Sum_probs=35.9
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEe
Q 025493 132 QCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVK 184 (252)
Q Consensus 132 ~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~ 184 (252)
.++......+.+|..+|++.+. ++..-|.++|+.|+-.|.|++..
T Consensus 21 ~l~~l~~~~~~~s~~ela~~l~--------is~~tv~~~l~~Le~~Gli~r~~ 65 (139)
T 2x4h_A 21 TIKRYNDSGEGAKINRIAKDLK--------IAPSSVFEEVSHLEEKGLVKKKE 65 (139)
T ss_dssp HHHHHHTTTSCBCHHHHHHHHT--------CCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHhcCCCcCHHHHHHHhC--------CChHHHHHHHHHHHHCCCEEecC
Confidence 3444445567899999998764 67889999999999999999764
No 430
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Probab=42.71 E-value=84 Score=21.94 Aligned_cols=51 Identities=2% Similarity=-0.039 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhhhCC---CCCHHHHHHHHHH-----cCCcceecCHHHHHHHHHHHhhcC
Q 025493 125 FIKVVKSQCLKQIIKLK---VATLEGISDSIKR-----SGAFKVDLTKQQIEEIVRAVVLDN 178 (252)
Q Consensus 125 fV~~l~~~~~~~i~~~~---~~T~~~I~~~i~~-----~~i~~~~Ls~~di~~IL~tLVyDg 178 (252)
-++.|+++...|=...+ +.|.+|+...++. .| ..++.++++++++.+=.||
T Consensus 7 ~~~~l~~~F~~~D~~dG~~g~Is~~EL~~~l~~~~~~~lg---~~~~~~~v~~~~~~~D~d~ 65 (92)
T 3rm1_A 7 AVVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLE---EIKEQEVVDKVMETLDSNG 65 (92)
T ss_dssp HHHHHHHHHHHHHTSSSSTTSBCHHHHHHHHHHHCTTTSC---CCCSHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHHccCCCCcCeECHHHHHHHHHHHhhhhcc---CcccHHHHHHHHHHHcCCC
Confidence 45666666666653334 9999999999998 45 4688999999999875553
No 431
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=42.71 E-value=28 Score=27.31 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEe
Q 025493 141 KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVK 184 (252)
Q Consensus 141 ~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~ 184 (252)
..+|.++|++.+ .++...+++|+..|.--|.|+.++
T Consensus 27 ~~~s~~~IA~~~--------~i~~~~l~kil~~L~~aGlv~s~r 62 (143)
T 3t8r_A 27 GCISLKSIAEEN--------NLSDLYLEQLVGPLRNAGLIRSVR 62 (143)
T ss_dssp CCEEHHHHHHHT--------TCCHHHHHHHHHHHHHTTSEEECS
T ss_pred CCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCEEEecC
Confidence 468999998754 478999999999999999998765
No 432
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=42.51 E-value=62 Score=27.75 Aligned_cols=45 Identities=18% Similarity=0.256 Sum_probs=39.4
Q ss_pred CCCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhc
Q 025493 31 SDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNK 82 (252)
Q Consensus 31 ~~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k 82 (252)
...||+.|+.|+.++.+ |...++|...+ ++..++|...++.+-.|
T Consensus 195 ~~~Lt~re~~vl~~~~~-----G~s~~eIA~~l--~is~~TV~~~~~~~~~k 239 (265)
T 3qp6_A 195 NMPLSQREYDIFHWMSR-----GKTNWEIATIL--NISERTVKFHVANVIRK 239 (265)
T ss_dssp CCCCCHHHHHHHHHHHT-----TCCHHHHHHHH--TSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHc-----CCCHHHHHHHH--CcCHHHHHHHHHHHHHH
Confidence 35799999999999855 89999999999 99999999999887543
No 433
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=42.44 E-value=22 Score=31.69 Aligned_cols=45 Identities=13% Similarity=0.310 Sum_probs=36.7
Q ss_pred HHHHHHhhcCCCc--ccHHHHHHHhhcCC------ChHHHHHHHHHHHhcCCeeee
Q 025493 41 IYDVIRSNKQDMG--IWTRDMKRELKVNL------PDNIVTKSIKSLQNKSLIKEV 88 (252)
Q Consensus 41 vy~~I~~~ag~~G--Iw~~dik~~~~~~l------~~~~l~k~lK~Le~k~lIK~v 88 (252)
|+++|.+ +|+.| +...+|..++ ++ ++..+.|.|+.|...|++++.
T Consensus 49 if~~L~~-~g~pg~~~t~~eLA~~~--~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 101 (372)
T 1fp1_D 49 LFEIIAK-ATPPGAFMSPSEIASKL--PASTQHSDLPNRLDRMLRLLASYSVLTST 101 (372)
T ss_dssp HHHHHHT-CSSTTCCBCHHHHHTTS--CGGGCCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred hHHHHHh-cCCCCCCcCHHHHHHhc--CCCCCCCcChHHHHHHHHHHhhCCceEec
Confidence 3456666 55223 9999999999 98 678999999999999999985
No 434
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=42.37 E-value=1.2e+02 Score=23.69 Aligned_cols=69 Identities=7% Similarity=-0.017 Sum_probs=50.0
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeCCCCCcccccCCcceeecccCC
Q 025493 133 CLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKG 207 (252)
Q Consensus 133 ~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~g~~~f~~~~~g~~~YR~~~~~ 207 (252)
++..|.. +..+--+|.+.|.+.. -...++..-|-.+|+.|+-+|.|+.......+ ....++.|+++...
T Consensus 39 IL~lL~~-~~~~Gyei~k~l~~~~-~~~~is~gtLYp~L~rLe~~GlI~~~~~~~~~----~g~~rk~Y~LT~~G 107 (138)
T 2e1n_A 39 VLAVLRH-EDSYGTELIQHLETHW-PNYRLSDTVLYTALKFLEDEQIISGYWKKVEG----RGRPRRMYQLAQAN 107 (138)
T ss_dssp HHHHHTT-SCEEHHHHHHHHHHHS-TTEECCHHHHHHHHHHHHHTTSEEEEEECCTT----CSSCEEEEEESCSC
T ss_pred HHHHHHh-CCCcHHHHHHHHHHHc-CCCCCCccHHHHHHHHHHHCCCEEEEeecccC----CCCCcEEEEECHHH
Confidence 5556654 5677889999998764 35689999999999999999999986532100 01346788887654
No 435
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=42.23 E-value=37 Score=27.29 Aligned_cols=44 Identities=23% Similarity=0.355 Sum_probs=38.2
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhc
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNK 82 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k 82 (252)
..||+-|+.|+.++.+ |...++|..++ ++..++|...++.|-+|
T Consensus 158 ~~Lt~rE~~vL~~l~~-----g~s~~~Ia~~l--~~s~~Tv~~~i~~l~~K 201 (225)
T 3klo_A 158 AKLTKREQQIIKLLGS-----GASNIEIADKL--FVSENTVKTHLHNVFKK 201 (225)
T ss_dssp HTSCHHHHHHHHHHTT-----TCCHHHHHHHT--TCCHHHHHHHHHHHTTT
T ss_pred ccCCHHHHHHHHHHHc-----CCCHHHHHHHh--CCCHHHHHHHHHHHHHH
Confidence 3599999999999865 68899999999 99999999999988554
No 436
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=41.63 E-value=87 Score=22.97 Aligned_cols=36 Identities=14% Similarity=0.339 Sum_probs=30.8
Q ss_pred hCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhc
Q 025493 139 KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLD 177 (252)
Q Consensus 139 ~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyD 177 (252)
..++.|.+|+..+++..| ..++.++++.+++.+-.|
T Consensus 109 ~~G~I~~~e~~~~l~~~g---~~~~~~~~~~~~~~~d~~ 144 (162)
T 1top_A 109 ADGFIDIEELGEILRATG---EHVTEEDIEDLMKDSDKN 144 (162)
T ss_dssp CSSCBCHHHHHHHHHTTT---CCCCHHHHHHHHHHHCTT
T ss_pred CCCcCcHHHHHHHHHHhC---CCCCHHHHHHHHHHhCCC
Confidence 458999999999999887 468999999999987544
No 437
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=41.55 E-value=35 Score=27.30 Aligned_cols=45 Identities=18% Similarity=0.098 Sum_probs=34.8
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcC-----CChHHHHHHHHHH
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVN-----LPDNIVTKSIKSL 79 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~-----l~~~~l~k~lK~L 79 (252)
..||+-|..|+.++.+ ..++-+..++|-.++ + +..++|...++.|
T Consensus 158 ~~Lt~rE~~vL~~l~~-g~~~~~s~~~Ia~~l--~~~~~~~s~~tv~~hi~~l 207 (233)
T 1ys7_A 158 VDLTKREFDLLAVLAE-HKTAVLSRAQLLELV--WGYDFAADTNVVDVFIGYL 207 (233)
T ss_dssp CCCCHHHHHHHHHHHH-TTTCCBCHHHHHHHH--HCCCCC-CCCHHHHHHHHH
T ss_pred eccCHHHHHHHHHHHh-CCCCeEcHHHHHHHh--cCcccCCCccCHHHHHHHH
Confidence 4699999999999999 777789999999998 5 6666555544444
No 438
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=41.54 E-value=60 Score=23.39 Aligned_cols=105 Identities=13% Similarity=0.280 Sum_probs=65.9
Q ss_pred CCChHHH----HHHHHHHhhcCCCcccHHHHHHHh---hcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEecccc
Q 025493 33 SLTDHER----LIYDVIRSNKQDMGIWTRDMKREL---KVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFE 105 (252)
Q Consensus 33 ~l~~~e~----~vy~~I~~~ag~~GIw~~dik~~~---~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~~le 105 (252)
.|++++. .++..+.. .|+.-|...+++.-. +.+++...+...++.+-..
T Consensus 4 ~l~~~~~~~l~~~F~~~D~-~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~----------------------- 59 (147)
T 4ds7_A 4 NLTEEQIAEFKEAFALFDK-DNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVD----------------------- 59 (147)
T ss_dssp CCCHHHHHHHHHHHHHHCT-TCSSEEEHHHHHHHHHHTTCCCCHHHHHHHHHHHCTT-----------------------
T ss_pred cCCHHHHHHHHHHHHHHCC-CCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccC-----------------------
Confidence 4666553 34555666 677778888887643 2245666666666655211
Q ss_pred cCCCccCCccccCCcCC-HHHHHHHHHH------------HHHHh--hhCCCCCHHHHHHHHHHcCCcceecCHHHHHHH
Q 025493 106 PSKDISGGAWYSEGSLD-TEFIKVVKSQ------------CLKQI--IKLKVATLEGISDSIKRSGAFKVDLTKQQIEEI 170 (252)
Q Consensus 106 Ps~eiTGG~wy~d~e~D-~efV~~l~~~------------~~~~i--~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~I 170 (252)
.+|.++ .||+..+... +++.+ ...+..|.+|+.++++..| ..++.++++.+
T Consensus 60 -----------~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~---~~~~~~~~~~~ 125 (147)
T 4ds7_A 60 -----------GNHAIEFSEFLALMSRQLKCNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIG---EKLTDAEVDEM 125 (147)
T ss_dssp -----------SSSEEEHHHHHHHHHHHHHTHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTT---CCCCHHHHHHH
T ss_pred -----------CCCcCcHHHHHHHHHHhccCCCcHHHHHHHHHHhCCCCCCeECHHHHHHHHHHcC---CCCCHHHHHHH
Confidence 012222 3455555432 11222 1458999999999999887 47899999999
Q ss_pred HHHHh
Q 025493 171 VRAVV 175 (252)
Q Consensus 171 L~tLV 175 (252)
++.+-
T Consensus 126 ~~~~d 130 (147)
T 4ds7_A 126 LREVS 130 (147)
T ss_dssp HHHHS
T ss_pred HHHhc
Confidence 99885
No 439
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=41.39 E-value=27 Score=28.79 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=37.3
Q ss_pred HHHHHHHhhc-------CCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeee
Q 025493 40 LIYDVIRSNK-------QDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEV 88 (252)
Q Consensus 40 ~vy~~I~~~a-------g~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~v 88 (252)
.||+.|++ . -+.=+-.++|..+. |+..+.|..+|+.|+..|||...
T Consensus 20 ~v~~~l~~-~I~~g~l~pG~~L~E~~La~~l--gVSRtpVREAl~~L~~eGlv~~~ 72 (222)
T 3ihu_A 20 TVFFGIMS-GLELGTFVPGQRLVETDLVAHF--GVGRNSVREALQRLAAEGIVDLQ 72 (222)
T ss_dssp HHHHHHHH-HHHHTSSCTTCEECHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHH-HHHhCCCCCCCccCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEEe
Confidence 56776665 2 22334489999999 99999999999999999999875
No 440
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=41.20 E-value=25 Score=28.91 Aligned_cols=53 Identities=15% Similarity=0.298 Sum_probs=40.6
Q ss_pred HHHHHHHhhc-------CCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEE
Q 025493 40 LIYDVIRSNK-------QDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLM 100 (252)
Q Consensus 40 ~vy~~I~~~a-------g~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~Ym 100 (252)
.||+.|++ . -+.=+..++|..+. |+..+.|..+|+.|+..|||... |++-.|+
T Consensus 16 ~v~~~l~~-~I~~g~l~pG~~L~e~~La~~l--gVSRtpVREAL~~L~~eGlv~~~-----~~~G~~V 75 (218)
T 3sxy_A 16 KVYNLLKE-MILNHELKLGEKLNVRELSEKL--GISFTPVRDALLQLATEGLVKVV-----PRVGFFV 75 (218)
T ss_dssp HHHHHHHH-HHHTTSSCTTCEECHHHHHHHH--TCCHHHHHHHHHHHHHHTSEEEE-----TTTEEEE
T ss_pred HHHHHHHH-HHHhCCCCCCCEeCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEEe-----CCCceEE
Confidence 46666654 2 12335779999999 99999999999999999999876 4455554
No 441
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=40.92 E-value=45 Score=24.84 Aligned_cols=45 Identities=7% Similarity=0.063 Sum_probs=35.7
Q ss_pred CCCCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHH
Q 025493 30 PSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSI 76 (252)
Q Consensus 30 ~~~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~l 76 (252)
.+..|++.|+.|+.+-.-..|..|...++|-..+ |++...|...+
T Consensus 16 aL~~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~l--giS~~tVr~~~ 60 (99)
T 3t72_q 16 VLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQF--DVTRERIRQIE 60 (99)
T ss_pred HHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH--CcCHHHHHHHH
Confidence 4568999999999886631456899999999999 99987765443
No 442
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=40.88 E-value=60 Score=22.93 Aligned_cols=48 Identities=10% Similarity=-0.058 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHh-hhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhc
Q 025493 125 FIKVVKSQCLKQI-IKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLD 177 (252)
Q Consensus 125 fV~~l~~~~~~~i-~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyD 177 (252)
=++.++++...|= ...|+.|.+|+...+++.| ++.+++++|++..=.|
T Consensus 8 ~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g-----~~~~~~~~i~~~~D~d 56 (95)
T 1c07_A 8 EKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTG-----LPSTLLAHIWSLCDTK 56 (95)
T ss_dssp HHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTT-----CCHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcC-----CCHHHHHHHHHHHCCC
Confidence 3555555443332 2468899999999999876 5788999999876443
No 443
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=40.83 E-value=35 Score=25.72 Aligned_cols=45 Identities=13% Similarity=0.151 Sum_probs=31.1
Q ss_pred HHHHhhhCC-CCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 133 CLKQIIKLK-VATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 133 ~~~~i~~~~-~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
++.+|...+ ..|..+|++.+. ++..-+-.+|+.|+-.|.|++...
T Consensus 44 vL~~l~~~~~~~t~~eLa~~l~--------i~~~tvs~~l~~Le~~Glv~r~~~ 89 (150)
T 3fm5_A 44 VLVLACEQAEGVNQRGVAATMG--------LDPSQIVGLVDELEERGLVVRTLD 89 (150)
T ss_dssp HHHHHHHSTTCCCSHHHHHHHT--------CCHHHHHHHHHHHHTTTSEEC---
T ss_pred HHHHHHhCCCCcCHHHHHHHHC--------CCHhHHHHHHHHHHHCCCEEeeCC
Confidence 444454333 447777776653 678899999999999999998764
No 444
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=40.69 E-value=18 Score=29.51 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=24.3
Q ss_pred ccCCeeeEEecccccCCCccCCccccCCc-CCHHHHHHHHHHHHHH
Q 025493 92 HNKGKKHLMAVEFEPSKDISGGAWYSEGS-LDTEFIKVVKSQCLKQ 136 (252)
Q Consensus 92 ~~~~rK~YmL~~lePs~eiTGG~wy~d~e-~D~efV~~l~~~~~~~ 136 (252)
++.-||.|.+ ||+||++++ . ++.+.+++.|..+
T Consensus 6 ~~~~~~~~y~----------a~~~F~~~e~~--~~~~~l~~~l~~~ 39 (161)
T 2f62_A 6 HHHMRKIYIA----------GPAVFNPDMGA--SYYNKVRELLKKE 39 (161)
T ss_dssp CCCCCEEEEE----------SGGGGSTTTTH--HHHHHHHHHHHTT
T ss_pred hhhhhceEEE----------ECCCCCHHHHH--HHHHHHHHHHHHC
Confidence 3456888877 899999888 7 6777777666543
No 445
>2yuf_A NGFI-A-binding protein 1; transcriptional repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.62 E-value=74 Score=25.66 Aligned_cols=45 Identities=18% Similarity=0.148 Sum_probs=41.6
Q ss_pred CCccccCCcCCHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHcC
Q 025493 112 GGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSG 156 (252)
Q Consensus 112 GG~wy~d~e~D~efV~~l~~~~~~~i~~~~~~T~~~I~~~i~~~~ 156 (252)
||+|=....+|.+-|..+.+.+.+......-..+.++.+.|+...
T Consensus 1 ~~~~~~~e~L~~~~v~~v~e~~erl~~tlP~~dp~e~~~~l~~~K 45 (142)
T 2yuf_A 1 GSSGSSGEALDAAAALSVAECVERMAPTLPKSDLNEVKELLKTNK 45 (142)
T ss_dssp CCCCCCCCCSCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHCS
T ss_pred CCCCCcccccCHHHHHHHHHHHHHHHhhCCCCCchHHHHHHHHhH
Confidence 899999999999999999999999999999999999999998665
No 446
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=40.51 E-value=23 Score=27.31 Aligned_cols=45 Identities=11% Similarity=0.028 Sum_probs=31.6
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 133 CLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 133 ~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
++.+|..++..|..+|++.+ .++..-|-.+|+.|+-.|.|++...
T Consensus 58 vL~~l~~~~~~t~~eLa~~l--------~~~~~~vs~~l~~Le~~Glv~r~~~ 102 (161)
T 3e6m_A 58 LLSSLSAYGELTVGQLATLG--------VMEQSTTSRTVDQLVDEGLAARSIS 102 (161)
T ss_dssp HHHHHHHHSEEEHHHHHHHT--------TCCHHHHHHHHHHHHHTTSEEECC-
T ss_pred HHHHHHhCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEeeCC
Confidence 33444444555666665543 4678899999999999999998764
No 447
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=40.36 E-value=30 Score=25.71 Aligned_cols=46 Identities=9% Similarity=0.142 Sum_probs=34.5
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 132 QCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 132 ~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
.++.+|...+..|..+|++.+ .++..-|..+|+.|+-.|.|++...
T Consensus 41 ~iL~~l~~~~~~~~~ela~~l--------~~~~~tvs~~l~~L~~~gli~r~~~ 86 (142)
T 2bv6_A 41 LVLTILWDESPVNVKKVVTEL--------ALDTGTVSPLLKRMEQVDLIKRERS 86 (142)
T ss_dssp HHHHHHHHSSEEEHHHHHHHT--------TCCTTTHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHcCCcCHHHHHHHH--------CCChhhHHHHHHHHHHCCCEEeecC
Confidence 455556566667777777766 2456678899999999999998764
No 448
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=40.32 E-value=53 Score=28.64 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=36.4
Q ss_pred HHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeee
Q 025493 40 LIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEV 88 (252)
Q Consensus 40 ~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~v 88 (252)
-|+++|. .| .+...+|..++ ++++..+.+.|+.|...|++.+.
T Consensus 43 ~i~~~l~--~~--~~t~~ela~~~--~~~~~~l~r~L~~L~~~g~~~~~ 85 (360)
T 1tw3_A 43 RLVDHIL--AG--ARTVKALAART--DTRPEALLRLIRHLVAIGLLEED 85 (360)
T ss_dssp THHHHHH--TT--CCBHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHh--CC--CCCHHHHHHHh--CcCHHHHHHHHHHHHHCCCEEec
Confidence 3556663 33 48899999999 99999999999999999999985
No 449
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=40.32 E-value=58 Score=24.23 Aligned_cols=46 Identities=11% Similarity=0.127 Sum_probs=36.8
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeC
Q 025493 132 QCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSN 186 (252)
Q Consensus 132 ~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~ 186 (252)
.++.+|...+. |..+|++.+ .++..-|-.+|+.|+-.|.|++.+..
T Consensus 41 ~iL~~l~~~~~-~~~~la~~l--------~~~~~tvs~~l~~Le~~Glv~r~~~~ 86 (144)
T 3f3x_A 41 SILKATSEEPR-SMVYLANRY--------FVTQSAITAAVDKLEAKGLVRRIRDS 86 (144)
T ss_dssp HHHHHHHHSCE-EHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHHHCCC-CHHHHHHHH--------CCChhHHHHHHHHHHHCCCEEeccCC
Confidence 46666666666 888888876 36788999999999999999988754
No 450
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=40.05 E-value=34 Score=26.45 Aligned_cols=49 Identities=20% Similarity=0.213 Sum_probs=42.0
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEe
Q 025493 128 VVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVK 184 (252)
Q Consensus 128 ~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~ 184 (252)
.....++..|+..+..|..+|++-+ .+|..-+.+.|+.|.-.|.|.+..
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~~ 55 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT--------GLAESTIHERIRKLRESGVIKKFT 55 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH--------CSCHHHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeEEEE
Confidence 4566788899988999999999866 478999999999999999998754
No 451
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=40.03 E-value=24 Score=26.63 Aligned_cols=49 Identities=22% Similarity=0.198 Sum_probs=41.2
Q ss_pred CCCChHHHHHHHHHHhhcCC--CcccHHHHHHHhhcCCChHHHHHHHHHHHhcC
Q 025493 32 DSLTDHERLIYDVIRSNKQD--MGIWTRDMKRELKVNLPDNIVTKSIKSLQNKS 83 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~--~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~ 83 (252)
.+|++-|+.|.++|.+ .-+ .....++|.+++ +.....|.|-.|+|-=+|
T Consensus 17 ~~ls~~e~~ia~yil~-~~~~~~~~si~elA~~~--~vS~aTv~Rf~kklG~~g 67 (111)
T 2o3f_A 17 HXLPPSERKLADYILA-HPHXAIESTVNEISALA--NSSDAAVIRLCXSLGLKG 67 (111)
T ss_dssp GGSCHHHHHHHHHHHH-CHHHHHTCCHHHHHHHT--TCCHHHHHHHHHHTTCSS
T ss_pred ccCCHHHHHHHHHHHH-ChHHHHhcCHHHHHHHH--CCCHHHHHHHHHHcCCCC
Confidence 4699999999999998 333 367889999999 999999999999885443
No 452
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=39.96 E-value=87 Score=25.53 Aligned_cols=58 Identities=12% Similarity=0.112 Sum_probs=41.7
Q ss_pred CCChHHHHHHHHHHhhcCCCcccHHHHHHHhhc---CCChHHHHHHHH----HHHh--cCCeeeeecc
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKV---NLPDNIVTKSIK----SLQN--KSLIKEVVNI 91 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~---~l~~~~l~k~lK----~Le~--k~lIK~vksv 91 (252)
.||+-|..|+.++-+ .-++++..++|-.+.-. +...++|...++ +|+. ..+|+.|..+
T Consensus 176 ~LT~rE~~iL~~l~~-~~~~~~s~~~i~~~lw~~~~~~~~~tv~~~i~~lr~KL~~~~~~~I~tv~g~ 242 (250)
T 3r0j_A 176 SLSPTEFTLLRYFVI-NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGV 242 (250)
T ss_dssp CCCHHHHHHHHHHHH-TTTCCBCHHHHHHHHTTTSCCSCTHHHHHHHHHHHHHHCCSSSCCEEEETTT
T ss_pred ecCHHHHHHHHHHHH-CCCceEcHHHHHHHHcCCCCCCCccCHHHHHHHHHHhhcCCCCCcEEEeccc
Confidence 699999999999999 88999999999987611 345566555554 4543 2467666554
No 453
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=39.96 E-value=81 Score=27.22 Aligned_cols=59 Identities=19% Similarity=0.115 Sum_probs=42.3
Q ss_pred CCCCChHHHHHHHHHHhhcC---CC-cccHHHHHH-------Hhhc-CCChHHHHHHHHHHHhcCCeeeeec
Q 025493 31 SDSLTDHERLIYDVIRSNKQ---DM-GIWTRDMKR-------ELKV-NLPDNIVTKSIKSLQNKSLIKEVVN 90 (252)
Q Consensus 31 ~~~l~~~e~~vy~~I~~~ag---~~-GIw~~dik~-------~~~~-~l~~~~l~k~lK~Le~k~lIK~vks 90 (252)
...|+.+++.++..|.. .. +. .+-..++.. +.+. .+....+.++|+.|+.+|+|.....
T Consensus 283 l~~l~~~~~~~L~~l~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 283 LIGLPLHEKLFLLAIVR-SLKISHTPYITFGDAEESYKIVCEEYGERPRVHSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp HHHSCHHHHHHHHHHHH-HHHHHCSSCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHcCCHHHHHHHHHHHH-HHhhccCCCccHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCeEEeee
Confidence 46788888888887775 32 11 566666644 2211 4577999999999999999998654
No 454
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=39.86 E-value=1e+02 Score=22.58 Aligned_cols=36 Identities=17% Similarity=0.317 Sum_probs=30.1
Q ss_pred hCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhc
Q 025493 139 KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLD 177 (252)
Q Consensus 139 ~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyD 177 (252)
..++.|.+|+..+++..| ..++.++++.+++.+=-|
T Consensus 92 ~~G~I~~~el~~~l~~~g---~~~~~~~~~~~~~~~D~d 127 (143)
T 2obh_A 92 ETGKISFKNLKRVAKELG---ENLTDEELQEMIDEADRD 127 (143)
T ss_dssp CSSSBCHHHHHHHHHHTT---CCCCHHHHHHHHHHHCTT
T ss_pred CCCcCcHHHHHHHHHHhC---CCCCHHHHHHHHHHhCCC
Confidence 358999999999999887 368999999999876444
No 455
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=39.42 E-value=55 Score=24.69 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=35.6
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHH
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQ 80 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le 80 (252)
..|++.++.|+.+... .|...++|...+ |++.+.|.+.+...-
T Consensus 21 ~~L~~~~r~vl~l~y~----~g~s~~EIA~~l--giS~~tV~~~l~ra~ 63 (113)
T 1s7o_A 21 ALLTDKQMNYIELYYA----DDYSLAEIADEF--GVSRQAVYDNIKRTE 63 (113)
T ss_dssp GGSCHHHHHHHHHHHH----TCCCHHHHHHHH--TCCHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHH----cCCCHHHHHHHH--CcCHHHHHHHHHHHH
Confidence 4699999999988755 478999999999 999998877766543
No 456
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=39.41 E-value=72 Score=25.41 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=38.4
Q ss_pred HHHHHHHhhh--CCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEeeC
Q 025493 130 KSQCLKQIIK--LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSN 186 (252)
Q Consensus 130 ~~~~~~~i~~--~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~~ 186 (252)
.-.++.+|.. .+.+|..+|++.+ .++..-|-.+|+.|+-.|.|++....
T Consensus 43 q~~vL~~L~~~~~~~~t~~eLa~~l--------~is~~tvs~~l~~Le~~GlV~r~~~~ 93 (189)
T 3nqo_A 43 QYMTILSILHLPEEETTLNNIARKM--------GTSKQNINRLVANLEKNGYVDVIPSP 93 (189)
T ss_dssp HHHHHHHHHHSCGGGCCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred HHHHHHHHHhccCCCcCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEeccCC
Confidence 3456666665 4578888888776 36788999999999999999998754
No 457
>3ayh_A DNA-directed RNA polymerase III subunit RPC9; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=39.13 E-value=69 Score=25.24 Aligned_cols=46 Identities=22% Similarity=0.243 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhhhCCCCC---HHHHHHHHHHcCCcceecCHHHHHHHHHH
Q 025493 126 IKVVKSQCLKQIIKLKVAT---LEGISDSIKRSGAFKVDLTKQQIEEIVRA 173 (252)
Q Consensus 126 V~~l~~~~~~~i~~~~~~T---~~~I~~~i~~~~i~~~~Ls~~di~~IL~t 173 (252)
.+.+-..+++|+.+...++ .+.|.++++... ...|+..++-+|+|.
T Consensus 52 l~ti~~e~l~YL~~~p~~~~q~~e~i~~l~~~L~--~~~Ltk~E~LqivNl 100 (136)
T 3ayh_A 52 LRTIQFEILKYLSSQGNCEGLTKERFLDCIAIFN--EFELTKAEILVILNN 100 (136)
T ss_dssp HHHHHHHHHHHHHTTTCCTTCCHHHHHHHHHTTT--TTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccccCHHHHHHHHHHHH--hcCCCHHHHHHHhcc
Confidence 4566677899999876555 999999998765 567888888888875
No 458
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=38.93 E-value=40 Score=26.32 Aligned_cols=37 Identities=5% Similarity=0.049 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee
Q 025493 141 KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS 185 (252)
Q Consensus 141 ~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~ 185 (252)
+.+|..+|++.+ .++..-|-.+|+.|+-.|.|++...
T Consensus 67 ~~~t~~eLa~~l--------~i~~~tvs~~l~~Le~~GlV~r~~~ 103 (166)
T 3deu_A 67 PDQSQIQLAKAI--------GIEQPSLVRTLDQLEDKGLISRQTC 103 (166)
T ss_dssp SSEEHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEC--
T ss_pred CCCCHHHHHHHH--------CCCHhhHHHHHHHHHHCCCEEeeCC
Confidence 344555555544 4678899999999999999998764
No 459
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=38.92 E-value=74 Score=24.04 Aligned_cols=70 Identities=13% Similarity=0.138 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEee-CCCCCcccccCCcceeeccc
Q 025493 127 KVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKS-NGSGEFTNIPVGKVCYKNVS 205 (252)
Q Consensus 127 ~~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~~-~g~~~f~~~~~g~~~YR~~~ 205 (252)
..++-.++..|.. +..+--+|.+.|....- ..++..-|-.+|+.|+-+|.|+.... .+. .+.++.|+++.
T Consensus 13 g~l~~~IL~lL~~-~p~~gyel~~~l~~~~~--~~i~~gtly~~L~~Le~~GlI~~~~~~~~~------~~~rk~Y~lT~ 83 (117)
T 3elk_A 13 GLITLYILKELVK-RPMHGYELQKSMFETTG--QALPQGSIYILLKTMKERGFVISESSVNEK------GQQLTVYHITD 83 (117)
T ss_dssp HHHHHHHHHHHHH-SCEEHHHHHHHHHHHHS--CCCCTTHHHHHHHHHHHHTSEEEEEEEC-C------CCEEEEEEECH
T ss_pred hHHHHHHHHHHHc-CCCCHHHHHHHHHHHhC--CCCCcchHHHHHHHHHHCCCEEEEeeecCC------CCCceEEEECH
Confidence 4566677777764 67788999999987532 24678999999999999999997653 111 13467788764
No 460
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A
Probab=38.90 E-value=67 Score=23.65 Aligned_cols=34 Identities=12% Similarity=0.129 Sum_probs=29.0
Q ss_pred hCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhc
Q 025493 139 KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLD 177 (252)
Q Consensus 139 ~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyD 177 (252)
..+..|.+|+..++...| ++.++++.+++.+--|
T Consensus 111 ~~G~i~~~E~~~~l~~~~-----~~~~~~~~~~~~~D~d 144 (166)
T 3akb_A 111 GDGAVTVADTARALTAFG-----VPEDLARQAAAALDTD 144 (166)
T ss_dssp SSSCCBHHHHHHHHHHTT-----CCHHHHHHHHHHHCTT
T ss_pred CCCcCCHHHHHHHHHHhC-----CCHHHHHHHHHHhCCC
Confidence 357999999999999987 8899999999986543
No 461
>2fok_A R.FOKI, FOKI restriction endonuclease; nucleic acid recognition, DNA-binding protein, type IIS restriction endonuclease; 2.30A {Planomicrobium okeanokoites} SCOP: a.4.5.12 a.4.5.12 a.4.5.12 c.52.1.12 PDB: 1fok_A*
Probab=38.86 E-value=25 Score=34.25 Aligned_cols=140 Identities=15% Similarity=0.224 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeee-ccccC---Ce--ee-----EEecc--
Q 025493 37 HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVV-NIHNK---GK--KH-----LMAVE-- 103 (252)
Q Consensus 37 ~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vk-sv~~~---~r--K~-----YmL~~-- 103 (252)
.|.++++-+.+ |-. =-.+.||..+- +=.+.=..-+-.=|.+-||+++++ .|..| ++ +. |++..
T Consensus 196 p~~i~~~~L~~-a~~--kek~kiksd~E-GtSDKYaRmI~~WL~k~Glv~~~~k~vt~~~~g~~~y~~~ig~sYkIT~~G 271 (579)
T 2fok_A 196 PEGILLDTLAN-AMP--KDKGEIRNNWE-GSSDKYARMIGGWLDKLGLVKQGKKEFIIPTLGKPDNKEFISHAFKITGEG 271 (579)
T ss_dssp CHHHHHHHHHT-SCH--HHHHHHHHHCC-CHHHHHHHHHHHHHHHTTSEEECCEEEECCC-----CEEEESSEEEECHHH
T ss_pred cHHHHHHHHHh-hCH--hHHhhhhcccc-cchHHHHHHHHHHHHHccceEeeeeEEEEeecCCcccccccCceEEEecch
Confidence 35577888877 632 12344444331 234445556667788999998764 34431 11 12 54432
Q ss_pred cccCCCccCCccc------------cCCcCCHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHH
Q 025493 104 FEPSKDISGGAWY------------SEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIV 171 (252)
Q Consensus 104 lePs~eiTGG~wy------------~d~e~D~efV~~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL 171 (252)
|.-=.+.+|=+=| .-..=|.+.|..=|..++++|...++.++++|..+++..|+-. +++.|..=+
T Consensus 272 l~aLk~~~G~Sk~~Ri~K~V~WemlATk~~dr~YiRtRR~~IlK~l~~~~~~s~~~I~~~L~~~g~~e---~~~tI~dDi 348 (579)
T 2fok_A 272 LKVLRRAKGSTKFTRVPKRVYWEMLATNLTDKEYVRTRRALILEILIKAGSLKIEQIQDNLKKLGFDE---VIETIENDI 348 (579)
T ss_dssp HHHHHHHHTCSSSCCCCBCCCGGGSCSSCTTHHHHHHHHHHHHHHHHHCSSEEHHHHHHHHHHTTCCC---CHHHHHHHH
T ss_pred HHHHHHhhCCccccccchhhhHHHHhccCccHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCcc---hHHHHHHHH
Confidence 2222233333222 2334599999999999999999989999999999999999732 344455556
Q ss_pred HHHhhcCeeEEE
Q 025493 172 RAVVLDNQIMEV 183 (252)
Q Consensus 172 ~tLVyDgkIE~v 183 (252)
+-|+.=|.=.+.
T Consensus 349 ~gl~~~Gl~ik~ 360 (579)
T 2fok_A 349 KGLINTGIFIEI 360 (579)
T ss_dssp HHHHTTTCCEEE
T ss_pred HHHHHhCeEEEe
Confidence 777777754443
No 462
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=38.85 E-value=1.1e+02 Score=25.91 Aligned_cols=54 Identities=11% Similarity=0.101 Sum_probs=46.0
Q ss_pred CCCCChHHHHHHHHHHhhcCCCccc--HHHHHHHhhcCCChHHHHHHHHHHHhcCCeee
Q 025493 31 SDSLTDHERLIYDVIRSNKQDMGIW--TRDMKRELKVNLPDNIVTKSIKSLQNKSLIKE 87 (252)
Q Consensus 31 ~~~l~~~e~~vy~~I~~~ag~~GIw--~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~ 87 (252)
++.|+.++..|+..|+. .-..--| ...|.+.. +++...+.+.++.|.+.+++..
T Consensus 7 ~~~l~~~~~~~l~a~e~-g~~~~~~v~~~~i~~~~--~l~~~~~~~~l~~l~~~~l~~~ 62 (282)
T 1zar_A 7 YGKMGKHSWRIMDAIFK-NLWDYEYVPLQLISSHA--RIGEEKARNILKYLSDLRVVQN 62 (282)
T ss_dssp HHTCCHHHHHHHHHHHT-TTTTCSSEEHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHhCCHhhhhhhHHHhh-CCcCceecCHHHHHHHh--CCChhhHHHHHHHHhhCCCccc
Confidence 45799999999999998 5455455 67888888 9999999999999999999765
No 463
>2ip6_A PAPB, PEDB; immunity protein to the pediocin PP-1, antimicrobial protein; 1.35A {Pediococcus pentosaceus}
Probab=38.41 E-value=19 Score=27.98 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=18.0
Q ss_pred CCChHHHHHHHHHHhhcCCCccc
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIW 55 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw 55 (252)
.|++||..++..|++.|+.+|+|
T Consensus 75 hl~~eE~~~L~~I~~ia~S~~~W 97 (112)
T 2ip6_A 75 HFTAEENKVLAAINELAHSQKGW 97 (112)
T ss_dssp CCCHHHHHHHHHHHHHTTC----
T ss_pred cCCHHHHHHHHHHHHHhcccccc
Confidence 58999999999999999999999
No 464
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=38.28 E-value=53 Score=21.33 Aligned_cols=51 Identities=16% Similarity=0.114 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhh-hCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhc
Q 025493 124 EFIKVVKSQCLKQII-KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLD 177 (252)
Q Consensus 124 efV~~l~~~~~~~i~-~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyD 177 (252)
+-++.+++....|=. ..+..|.+|+...++..| ..++.++++.+++.+-.|
T Consensus 4 ~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g---~~~~~~~~~~~~~~~d~~ 55 (77)
T 2joj_A 4 EQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALG---FDVKKPEILELMNEYDRE 55 (77)
T ss_dssp HHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHT---CCCHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhC---CCCCHHHHHHHHHHHCCC
Confidence 344555554444422 457899999999999987 467899999999887544
No 465
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=38.28 E-value=55 Score=26.70 Aligned_cols=46 Identities=9% Similarity=0.218 Sum_probs=31.2
Q ss_pred ChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhc---CCeee
Q 025493 35 TDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNK---SLIKE 87 (252)
Q Consensus 35 ~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k---~lIK~ 87 (252)
+-.+..++..|.+ .|+ ...=.+++ ++.|..|+|.||+||+. .|..+
T Consensus 2 ~l~~l~~f~~v~~-~gs----~s~AA~~L--~isq~avS~~i~~LE~~lg~~Lf~R 50 (294)
T 1ixc_A 2 EFRQLKYFIAVAE-AGN----MAAAAKRL--HVSQPPITRQMQALEADLGVVLLER 50 (294)
T ss_dssp CHHHHHHHHHHHH-HSS----HHHHHHHH--TCCHHHHHHHHHHHHHHHTSCCBC-
T ss_pred cHHHHHHHHHHHH-cCC----HHHHHHHh--CCCcchHHHHHHHHHHHHCCEEEEe
Confidence 3345556666666 553 23334577 99999999999999985 56554
No 466
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=38.05 E-value=55 Score=28.51 Aligned_cols=52 Identities=10% Similarity=0.120 Sum_probs=45.6
Q ss_pred CCCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeee
Q 025493 31 SDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKE 87 (252)
Q Consensus 31 ~~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~ 87 (252)
...|+.++..|+++++. . -.+...+|+..+ +.+......+|..|+..|+.=-
T Consensus 149 p~el~~D~~~vLela~~-~--g~vt~~~L~~~l--~W~~~Ra~~~L~~l~~~Gllwv 200 (234)
T 3cuq_A 149 PAELNMDHTVVLQLAEK-N--GYVTVSEIKASL--KWETERARQVLEHLLKEGLAWL 200 (234)
T ss_dssp CCCCCHHHHHHHHHHTT-T--SEECHHHHHHHH--TCCHHHHHHHHHHHHHHTSCEE
T ss_pred CCccchHHHHHHHHHHh-c--CcCcHHHHHHHh--CCCHHHHHHHHHHHHhCCCEEE
Confidence 44699999999998875 4 479999999999 9999999999999999998754
No 467
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=38.05 E-value=31 Score=26.06 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=40.1
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEe
Q 025493 129 VKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVK 184 (252)
Q Consensus 129 l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~ 184 (252)
+...++..|+..+..|..+|++.+ | +|..-+.+.|+.|+-+|.|++..
T Consensus 5 ~~~~il~~L~~~~~~~~~ela~~l---g-----~s~~tv~~~l~~L~~~G~i~~~~ 52 (141)
T 1i1g_A 5 RDKIILEILEKDARTPFTEIAKKL---G-----ISETAVRKRVKALEEKGIIEGYT 52 (141)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH---T-----SCHHHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH---C-----cCHHHHHHHHHHHHHCCCEeccc
Confidence 456777888888888999999877 3 57889999999999999998654
No 468
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=38.02 E-value=1.5e+02 Score=25.66 Aligned_cols=87 Identities=13% Similarity=0.182 Sum_probs=59.3
Q ss_pred CCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEecccccCCCccCCccccCCcCCHHHHHHHHHHHHHHhhhCCCCCH
Q 025493 66 NLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKDISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATL 145 (252)
Q Consensus 66 ~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~~lePs~eiTGG~wy~d~e~D~efV~~l~~~~~~~i~~~~~~T~ 145 (252)
.+.+..|-|++|+|+.-|-==+|..|. +++ |+- .. ..|++.+... ++..++..+++|+
T Consensus 114 ~IS~dDi~rAik~L~~LG~g~~v~~~~--g~~-~Vq--Sv------------p~el~~D~~~-----vLela~~~g~vt~ 171 (234)
T 3cuq_A 114 DVSQDDLIRAIKKLKALGTGFGIIPVG--GTY-LIQ--SV------------PAELNMDHTV-----VLQLAEKNGYVTV 171 (234)
T ss_dssp SCCHHHHHHHHHHHGGGBTTCEEEEET--TEE-EEE--CS------------CCCCCHHHHH-----HHHHHTTTSEECH
T ss_pred ccCHHHHHHHHHHHHhcCCCeEEEEEC--CEE-EEE--eC------------CCccchHHHH-----HHHHHHhcCcCcH
Confidence 578899999999999876311222232 443 432 12 3356655544 4455567899999
Q ss_pred HHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEE
Q 025493 146 EGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIME 182 (252)
Q Consensus 146 ~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~ 182 (252)
+++.+-+ ..+.+-.++.|+.|+-+|.+-.
T Consensus 172 ~~L~~~l--------~W~~~Ra~~~L~~l~~~Gllwv 200 (234)
T 3cuq_A 172 SEIKASL--------KWETERARQVLEHLLKEGLAWL 200 (234)
T ss_dssp HHHHHHH--------TCCHHHHHHHHHHHHHHTSCEE
T ss_pred HHHHHHh--------CCCHHHHHHHHHHHHhCCCEEE
Confidence 9998543 3567888999999999998864
No 469
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=37.81 E-value=57 Score=26.98 Aligned_cols=50 Identities=14% Similarity=0.249 Sum_probs=37.3
Q ss_pred CCCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhc---CCeee
Q 025493 31 SDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNK---SLIKE 87 (252)
Q Consensus 31 ~~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k---~lIK~ 87 (252)
+..|+-.+..++..|.+ .|+ -..=.+++ ++.|..|++.||+||+. .|..+
T Consensus 7 ~~~m~l~~L~~f~~v~~-~gs----~s~AA~~L--~isq~avS~~I~~LE~~lg~~Lf~R 59 (310)
T 2esn_A 7 LRRLDLNLLLVFDALYR-HRN----VGTAASEL--AISASAFSHALGRLRQGLDDELFLR 59 (310)
T ss_dssp TTTSCTTHHHHHHHHHH-HSS----HHHHHHHH--TCCHHHHHHHHHHHHHHHTSCCEEE
T ss_pred hhhcCHHHHHHHHHHHH-cCC----HHHHHHHh--CCChHHHHHHHHHHHHhhCCcceee
Confidence 34567677778888888 664 23335677 99999999999999984 67665
No 470
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=37.52 E-value=51 Score=25.85 Aligned_cols=43 Identities=19% Similarity=0.341 Sum_probs=34.9
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHh
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQN 81 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~ 81 (252)
..||+-|+.|+.++.+ |...++|..++ ++..++|...++.+-+
T Consensus 141 ~~Lt~rE~~vl~~l~~-----g~s~~~Ia~~l--~is~~TV~~~~~~i~~ 183 (208)
T 1yio_A 141 SSLTGREQQVLQLTIR-----GLMNKQIAGEL--GIAEVTVKVHRHNIMQ 183 (208)
T ss_dssp HTSCHHHHHHHHHHTT-----TCCHHHHHHHH--TCCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHc-----CCcHHHHHHHc--CCCHHHHHHHHHHHHH
Confidence 3599999999999855 57889999999 9999998766666643
No 471
>1hst_A Histone H5; chromosomal protein; 2.60A {Gallus gallus} SCOP: a.4.5.13
Probab=37.50 E-value=88 Score=23.01 Aligned_cols=58 Identities=19% Similarity=0.286 Sum_probs=44.7
Q ss_pred CChHHHHHHHHHHhhcCCCcccHHHHHHHhhc--CC---ChHHHHHHHHHHHhcCCeeeeecc
Q 025493 34 LTDHERLIYDVIRSNKQDMGIWTRDMKRELKV--NL---PDNIVTKSIKSLQNKSLIKEVVNI 91 (252)
Q Consensus 34 l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~--~l---~~~~l~k~lK~Le~k~lIK~vksv 91 (252)
......+|...|.+.....|.....|++-..- .. ....|+++||.|...|.+..++..
T Consensus 7 hP~y~~MI~eAI~~lker~GsS~~AI~KyI~~~y~~~~~~~~~l~~aLk~~v~~G~l~q~Kg~ 69 (90)
T 1hst_A 7 HPTYSEMIAAAIRAEKSRGGSSRQSIQKYIKSHYKVGHNADLQIKLSIRRLLAAGVLKQTKGV 69 (90)
T ss_dssp CCCHHHHHHHHHHTCCCSSCEEHHHHHHHHHHHSCCCTTHHHHHHHHHHHHHHTTSEEEECCS
T ss_pred CCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHHccCchhHHHHHHHHHHHHHHcCCeeeecCC
Confidence 34567799999999677779999999873211 22 356899999999999999998863
No 472
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=37.26 E-value=1.5e+02 Score=23.20 Aligned_cols=113 Identities=12% Similarity=0.177 Sum_probs=67.5
Q ss_pred ccCCCCCCCCCCCChHHH----HHHHHHHhhcCCCcccHHHHHHHh---hcCCChHHHHHHHHHHHhcCCeeeeeccccC
Q 025493 22 RKRPDSNAPSDSLTDHER----LIYDVIRSNKQDMGIWTRDMKREL---KVNLPDNIVTKSIKSLQNKSLIKEVVNIHNK 94 (252)
Q Consensus 22 ~~~~~~~~~~~~l~~~e~----~vy~~I~~~ag~~GIw~~dik~~~---~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~ 94 (252)
|...........|++++. .+|+.+.. -|+.-|...+++.-+ |.+++...+...+..+
T Consensus 39 r~~~~~~~~~~~ls~~~~~~l~~~F~~~D~-d~~G~i~~~el~~~l~~lg~~~~~~~~~~l~~~~--------------- 102 (196)
T 3dtp_E 39 RAQRSGSNVFAMFTQHQVQEFKEAFQLIDQ-DKDGFISKNDIRATFDSLGRLCTEQELDSMVAEA--------------- 102 (196)
T ss_dssp GCCCCCCCSSCSSCTTTHHHHHHHHHHHCC-SCSSBCCHHHHHHHHHTTSCCCCHHHHHHHHTTS---------------
T ss_pred cccccchhhhhhCCHHHHHHHHHHHHHHCC-CCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHc---------------
Confidence 333334445567777543 45666666 677778888887743 1234444544444321
Q ss_pred CeeeEEecccccCCCccCCccccCCcCC-HHHHHHHHH------------HHHHHhh--hCCCCCHHHHHHHHHHcCCcc
Q 025493 95 GKKHLMAVEFEPSKDISGGAWYSEGSLD-TEFIKVVKS------------QCLKQII--KLKVATLEGISDSIKRSGAFK 159 (252)
Q Consensus 95 ~rK~YmL~~lePs~eiTGG~wy~d~e~D-~efV~~l~~------------~~~~~i~--~~~~~T~~~I~~~i~~~~i~~ 159 (252)
+|.+| .||+..+.. .+++.+. ..+++|.+|+..++ ..|
T Consensus 103 -----------------------~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l-~~g--- 155 (196)
T 3dtp_E 103 -----------------------PGPINFTMFLTIFGDRIAGTDEEDVIVNAFNLFDEGDGKCKEETLKRSLT-TWG--- 155 (196)
T ss_dssp -----------------------SSCCBHHHHHHHHHHCCCSSCCHHHHHHHHHTTCSSSSCCBHHHHHHHHH-HSS---
T ss_pred -----------------------cCCCcHHHHHHHHHHHhcCCCcHHHHHHHHHHHCCCCCCcCcHHHHHHHH-HcC---
Confidence 22233 345555542 1122222 35899999999999 877
Q ss_pred eecCHHHHHHHHHHHhhc
Q 025493 160 VDLTKQQIEEIVRAVVLD 177 (252)
Q Consensus 160 ~~Ls~~di~~IL~tLVyD 177 (252)
..++.++++.+++.+-.|
T Consensus 156 ~~~~~~~~~~l~~~~D~d 173 (196)
T 3dtp_E 156 EKFSQDEVDQALSEAPID 173 (196)
T ss_dssp SCCCHHHHHHHHHSSCEE
T ss_pred CCCCHHHHHHHHHHcCCC
Confidence 478999999999876443
No 473
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=37.09 E-value=35 Score=21.62 Aligned_cols=35 Identities=14% Similarity=0.290 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHH
Q 025493 36 DHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIK 77 (252)
Q Consensus 36 ~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK 77 (252)
+....|..+. . .|...++|...+ |++.++|.+.++
T Consensus 19 ~~~~~i~~l~-~----~g~s~~eIA~~l--gis~~TV~~~l~ 53 (55)
T 2x48_A 19 DLVSVAHELA-K----MGYTVQQIANAL--GVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHH-H----TTCCHHHHHHHH--TSCHHHHHHHHT
T ss_pred HHHHHHHHHH-H----cCCCHHHHHHHH--CcCHHHHHHHHH
Confidence 3444555553 3 477999999999 999999999875
No 474
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=37.06 E-value=80 Score=22.67 Aligned_cols=55 Identities=11% Similarity=0.151 Sum_probs=40.5
Q ss_pred cCCHHHHHHHHHHHHHHhh-hCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhc
Q 025493 120 SLDTEFIKVVKSQCLKQII-KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLD 177 (252)
Q Consensus 120 e~D~efV~~l~~~~~~~i~-~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyD 177 (252)
.|..+-+..+++....+=. ..+..|.+|+..+++..|. .++.++++.+++.+-.|
T Consensus 4 ~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~---~~~~~~~~~l~~~~d~~ 59 (147)
T 4ds7_A 4 NLTEEQIAEFKEAFALFDKDNSGSISASELATVMRSLGL---SPSEAEVADLMNEIDVD 59 (147)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHTTC---CCCHHHHHHHHHHHCTT
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHhCC---CCCHHHHHHHHHHhccC
Confidence 4566667777776665533 4678999999999998774 57888888888877443
No 475
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=36.88 E-value=7.2 Score=34.24 Aligned_cols=52 Identities=15% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhC---CCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEe
Q 025493 126 IKVVKSQCLKQIIKL---KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVK 184 (252)
Q Consensus 126 V~~l~~~~~~~i~~~---~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~ 184 (252)
...+++.++++|+.. ..++.++|.+-++ .+++++|+++|+.|+-+|.|....
T Consensus 205 ~~~~~~~Vl~~i~~~~~~~Gi~~~~I~~~l~-------~~~~~~v~~al~~L~~eG~IYsTi 259 (270)
T 2pi2_A 205 LTVAQNQVLNLIKACPRPEGLNFQDLKNQLK-------HMSVSSIKQAVDFLSNEGHIYSTV 259 (270)
T ss_dssp --------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHhCCCccCCCHHHHHHHhc-------CCCHHHHHHHHHHHHhCCEEeccc
Confidence 345788899999875 4556666665554 267899999999999999997643
No 476
>3u5c_T 40S ribosomal protein S19-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_S 3o30_M 3o2z_M 3u5g_T 3jyv_T*
Probab=36.70 E-value=26 Score=28.57 Aligned_cols=46 Identities=11% Similarity=0.237 Sum_probs=32.2
Q ss_pred HHHHHHhhcCCCcccHHHHHHHhhc------------CCChHHHHHHHHHHHhcCCeeeee
Q 025493 41 IYDVIRSNKQDMGIWTRDMKRELKV------------NLPDNIVTKSIKSLQNKSLIKEVV 89 (252)
Q Consensus 41 vy~~I~~~ag~~GIw~~dik~~~~~------------~l~~~~l~k~lK~Le~k~lIK~vk 89 (252)
|...|-- -|.-|+ ..|++.-|- .=..+.+.++|++||+-|||...+
T Consensus 61 i~R~lYl-~g~vGV--~~lrk~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~g~vek~~ 118 (144)
T 3u5c_T 61 VARHIYM-RKQVGV--GKLNKLYGGAKSRGVRPYKHIDASGSINRKVLQALEKIGIVEISP 118 (144)
T ss_dssp HHHHHHT-SSBCCH--HHHHHHHCCEEEETTEEEEECCCCHHHHHHHHHHHHHTTSEECCS
T ss_pred HHHHHHh-cCCCcH--HHHHHHHCCCCCCCCCCccccccCcHHHHHHHHHHHHCCCeeecC
Confidence 5555555 565554 677776521 124589999999999999998754
No 477
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=36.69 E-value=88 Score=22.42 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhhCC--CCCHHHHHHHHHHcCCcceecCHHHHHHHHHH
Q 025493 128 VVKSQCLKQIIKLK--VATLEGISDSIKRSGAFKVDLTKQQIEEIVRA 173 (252)
Q Consensus 128 ~l~~~~~~~i~~~~--~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~t 173 (252)
.|-+.-.+||+... .+.++.=.+|+++.| |+.+||+..++.
T Consensus 16 ~li~~Av~FLqdp~V~~sp~~~K~~FL~sKG-----Lt~eEI~~Al~r 58 (70)
T 2w84_A 16 PLIATAVKFLQNSRVRQSPLATRRAFLKKKG-----LTDEEIDMAFQQ 58 (70)
T ss_dssp HHHHHHHHHHCSTTGGGSCHHHHHHHHHHTT-----CCHHHHHHHHHH
T ss_pred HHHHHHHHHhCChhhhhCCHHHHHHHHHHcC-----CCHHHHHHHHHH
Confidence 44455677898653 466889999999999 789999999876
No 478
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=36.47 E-value=40 Score=27.10 Aligned_cols=50 Identities=20% Similarity=0.213 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEe
Q 025493 127 KVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVK 184 (252)
Q Consensus 127 ~~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~ 184 (252)
+.+...++..|+..+..|..||++-+ .+|..-+.+-|+.|.-.|.|++..
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~l--------glS~~tv~~rl~~L~~~G~I~~~~ 75 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKIT--------GLAESTIHERIRKLRESGVIKKFT 75 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSSCCCC
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeEeee
Confidence 45677888899988999999999866 378999999999999999998754
No 479
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=36.43 E-value=66 Score=23.51 Aligned_cols=43 Identities=9% Similarity=0.127 Sum_probs=31.4
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEe
Q 025493 133 CLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVK 184 (252)
Q Consensus 133 ~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~ 184 (252)
++.+|.. +..|+.||++.+ .++..-|...|+.|+-.|.|++.+
T Consensus 30 IL~~L~~-~~~s~~eLa~~l--------gis~stvs~~L~~L~~~GlV~~~~ 72 (108)
T 2kko_A 30 ILDLLAQ-GERAVEAIATAT--------GMNLTTASANLQALKSGGLVEARR 72 (108)
T ss_dssp HHHHHTT-CCEEHHHHHHHH--------TCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHc-CCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeEEEE
Confidence 4444543 555666666544 367889999999999999999875
No 480
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=36.42 E-value=26 Score=29.26 Aligned_cols=31 Identities=13% Similarity=0.264 Sum_probs=29.0
Q ss_pred cHHHHHHHhhcCCChHHHHHHHHHHHhcCCeee
Q 025493 55 WTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKE 87 (252)
Q Consensus 55 w~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~ 87 (252)
..++|..+. |+..+.|..+|+.|+..|||..
T Consensus 30 sE~~La~~l--gVSRtpVREAL~~L~~~GlV~~ 60 (239)
T 2di3_A 30 SERALSETL--GVSRSSLREALRVLEALGTIST 60 (239)
T ss_dssp CHHHHHHHH--TCCHHHHHHHHHHHHHHTSEEC
T ss_pred CHHHHHHHH--CCCHHHHHHHHHHHHHCCCeEe
Confidence 467999999 9999999999999999999986
No 481
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=36.34 E-value=25 Score=21.36 Aligned_cols=41 Identities=10% Similarity=0.168 Sum_probs=29.3
Q ss_pred CCChHH-HHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHH
Q 025493 33 SLTDHE-RLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQ 80 (252)
Q Consensus 33 ~l~~~e-~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le 80 (252)
.+++++ ..|..+..+ |+..++|...+ +++.++|.+.++.+.
T Consensus 5 ~~~~~~~~~i~~l~~~-----g~s~~~ia~~l--gvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 5 AINKHEQEQISRLLEK-----GHPRQQLAIIF--GIGVSTLYRYFPASS 46 (52)
T ss_dssp SSCTTHHHHHHHHHHT-----TCCHHHHHHTT--SCCHHHHHHHSCTTC
T ss_pred CCCHHHHHHHHHHHHc-----CCCHHHHHHHH--CCCHHHHHHHHHHcc
Confidence 345443 345555432 58899999999 999999999887643
No 482
>4aan_A Cytochrome C551 peroxidase; oxidoreductase, multiheme cytochromes, conformational rearra; HET: HEC; 1.22A {Geobacter sulfurreducens} PDB: 4aam_A* 4aal_A* 4aao_A*
Probab=36.28 E-value=32 Score=31.49 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHH
Q 025493 141 KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAV 174 (252)
Q Consensus 141 ~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tL 174 (252)
.+.|++|+.+|..+.+ ....||.+|++.|+.=|
T Consensus 281 ~~~tLeevv~~y~~~~-~~~~Lt~~E~~~LvAFL 313 (341)
T 4aan_A 281 KVWKLKDAVKIMGSAQ-LGISITDADADKIVTFL 313 (341)
T ss_dssp CBCCHHHHHHHHHHHH-HSCCCCHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHhccC-cCCCCCHHHHHHHHHHH
Confidence 4578999999887654 34689999999885444
No 483
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=36.25 E-value=86 Score=22.25 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHh
Q 025493 38 ERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQN 81 (252)
Q Consensus 38 e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~ 81 (252)
-..|.++|+++-.+..+-..+|.... +++.+.+.+.+|..-.
T Consensus 4 ~~~i~~~i~~~~~~~~~~~~~lA~~~--~~S~~~l~r~fk~~~g 45 (103)
T 3lsg_A 4 KELIQNIIEESYTDSQFTLSVLSEKL--DLSSGYLSIMFKKNFG 45 (103)
T ss_dssp HHHHHHHHHHHTTCTTCCHHHHHHHT--TCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHH--CcCHHHHHHHHHHHHC
Confidence 34678889996666689999999999 9999999999998654
No 484
>1wwu_A Hypothetical protein FLJ21935; structural genomics, protein regulation, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens}
Probab=36.12 E-value=32 Score=26.31 Aligned_cols=31 Identities=6% Similarity=0.156 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHHcCCcc--------------eecCHHHHHHHHH
Q 025493 142 VATLEGISDSIKRSGAFK--------------VDLTKQQIEEIVR 172 (252)
Q Consensus 142 ~~T~~~I~~~i~~~~i~~--------------~~Ls~~di~~IL~ 172 (252)
..|++|+.+|++..|+++ ..|+.+|+++|.-
T Consensus 23 ~Ssp~EV~~WL~~kgFS~~tv~~Lg~ltGaqLf~Ltk~eL~~vCg 67 (99)
T 1wwu_A 23 ESGPDEVRAWLEAKAFSPRIVENLGILTGPQLFSLNKEELKKVCG 67 (99)
T ss_dssp TCCHHHHHHHHHHHTCCTTHHHHTTSSCHHHHHTCCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHcCCCHHHHHcCCHHHHHHHCc
Confidence 578999999999999887 3678888888864
No 485
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=36.10 E-value=7.6 Score=37.70 Aligned_cols=48 Identities=21% Similarity=0.350 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcC-Ceeee
Q 025493 37 HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKS-LIKEV 88 (252)
Q Consensus 37 ~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~-lIK~v 88 (252)
-|..|+..+++ .+. .|-+.++..++ ++++..|..++++|++++ +|+--
T Consensus 6 ~~~~iL~~l~~-~~~-~~~~~~~a~~~--~~~~~~v~~~~~~L~~~~~~v~~~ 54 (508)
T 3l4g_A 6 VAELLLRRLEA-SDG-GLDSAELAAEL--GMEHQAVVGAVKSLQALGEVIEAE 54 (508)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHHHHh-cCC-CcCHHHHHHHc--CCCHHHHHHHHHHHHhCCCeEEEE
Confidence 45667777765 432 46788899999 999999999999999998 98763
No 486
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=35.83 E-value=74 Score=28.19 Aligned_cols=59 Identities=10% Similarity=0.043 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeeccccCCeeeEEec
Q 025493 37 HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAV 102 (252)
Q Consensus 37 ~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vksv~~~~rK~YmL~ 102 (252)
-|.-|+++|.+ ++ .++...+|..++ +++...+.+.|+.|...++++.... .+.-.|-+.
T Consensus 29 ~eLglfd~L~~-~~-~p~t~~eLA~~~--g~~~~~l~rlLr~L~~~gll~~~~~---~~~~~y~~t 87 (353)
T 4a6d_A 29 CELGVFDLLAE-AP-GPLDVAAVAAGV--RASAHGTELLLDICVSLKLLKVETR---GGKAFYRNT 87 (353)
T ss_dssp HHHTHHHHHHH-SS-SCBCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEEE---TTEEEEEEC
T ss_pred HHcCHHHHHhc-CC-CCCCHHHHHHhh--CcCHHHHHHHHHHHHHCCCEEEecc---CccceeeCC
Confidence 34557888877 53 579999999999 9999999999999999999986532 234456553
No 487
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=35.54 E-value=66 Score=24.13 Aligned_cols=41 Identities=15% Similarity=0.213 Sum_probs=34.0
Q ss_pred CCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHH
Q 025493 32 DSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKS 78 (252)
Q Consensus 32 ~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~ 78 (252)
..|++.++.|+.+..- .|...++|...+ |++.+.|.+.+..
T Consensus 24 ~~L~~~~r~vl~l~~~----~g~s~~EIA~~l--giS~~tV~~~l~r 64 (113)
T 1xsv_A 24 SLLTNKQRNYLELFYL----EDYSLSEIADTF--NVSRQAVYDNIRR 64 (113)
T ss_dssp GGSCHHHHHHHHHHHT----SCCCHHHHHHHT--TCCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHH----cCCCHHHHHHHH--CcCHHHHHHHHHH
Confidence 5799999999988765 578999999999 9998887665544
No 488
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=35.48 E-value=1e+02 Score=22.92 Aligned_cols=57 Identities=9% Similarity=0.196 Sum_probs=39.7
Q ss_pred cCCHHHHHHHHHHHHHHhh-hCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCee
Q 025493 120 SLDTEFIKVVKSQCLKQII-KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQI 180 (252)
Q Consensus 120 e~D~efV~~l~~~~~~~i~-~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkI 180 (252)
.|..+-++.|++....|=. ..+..|.+|+..+++..|.. .++.++++.+++.. ||.|
T Consensus 18 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~--~~~~~~~~~l~~~~--dg~i 75 (166)
T 2mys_B 18 MFDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRL--NVKNEELDAMIKEA--SGPI 75 (166)
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCC--CCCHHHHHHHHHHC--CCCc
Confidence 4555566666666554422 45789999999999988742 57788888887753 6655
No 489
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=35.46 E-value=67 Score=27.11 Aligned_cols=42 Identities=21% Similarity=0.423 Sum_probs=34.8
Q ss_pred CCCCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHH
Q 025493 31 SDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSL 79 (252)
Q Consensus 31 ~~~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~L 79 (252)
...|++.|+.|+.+.. +|...++|...+ |++.++|...+...
T Consensus 195 ~~~L~~~erevl~L~~-----~G~s~~EIA~~L--~iS~~TVk~~l~ra 236 (258)
T 3clo_A 195 RNILSEREKEILRCIR-----KGLSSKEIAATL--YISVNTVNRHRQNI 236 (258)
T ss_dssp TTSSCHHHHHHHHHHH-----TTCCHHHHHHHH--TCCHHHHHHHHHHH
T ss_pred HccCCHHHHHHHHHHH-----cCCCHHHHHHHH--CcCHHHHHHHHHHH
Confidence 5689999999999863 589999999999 99988876555443
No 490
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=35.15 E-value=42 Score=26.50 Aligned_cols=50 Identities=8% Similarity=0.100 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEEe
Q 025493 127 KVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVK 184 (252)
Q Consensus 127 ~~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v~ 184 (252)
|.+...++..|+..+..|..+|++-+ .+|...|.+-|+.|.-.|.|.+..
T Consensus 2 D~~d~~il~~L~~~~~~s~~~la~~l--------g~s~~tv~~rl~~L~~~g~i~~~~ 51 (162)
T 3i4p_A 2 DRLDRKILRILQEDSTLAVADLAKKV--------GLSTTPCWRRIQKMEEDGVIRRRV 51 (162)
T ss_dssp CHHHHHHHHHHTTCSCSCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSSCCCC
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeeece
Confidence 35667889999999999999999866 488999999999999999998654
No 491
>1ust_A Histone H1; DNA binding protein, linker histone, DNA binding domain, winged helix fold; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=35.14 E-value=70 Score=23.69 Aligned_cols=58 Identities=17% Similarity=0.066 Sum_probs=43.2
Q ss_pred CCChHHHHHHHHHHhhcCCCcccHHHHHHHhhc----CC----ChHHHHHHHHHHHhcCCeeeeec
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKV----NL----PDNIVTKSIKSLQNKSLIKEVVN 90 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~----~l----~~~~l~k~lK~Le~k~lIK~vks 90 (252)
.-.....+|...|.+.....|-....|++-... ++ ....|+++||.|...|.+..++.
T Consensus 6 ~hP~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~~~~~~~~~~~~lk~aLK~~v~~G~lvq~KG 71 (93)
T 1ust_A 6 SSKSYRELIIEGLTALKERKGSSRPALKKFIKENYPIVGSASNFDLYFNNAIKKGVEAGDFEQPKG 71 (93)
T ss_dssp CCCCHHHHHHHHHTTTTTTSCEEHHHHHHHHHHHCHHHHTSTTHHHHHHHHHHHHHHTTSEECTTC
T ss_pred CCCCHHHHHHHHHHHcccCCCcCHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHHHHcCCEEeccC
Confidence 345567799999999677779999999872211 22 25579999999999888888764
No 492
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=35.06 E-value=58 Score=28.55 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhcCCCcccHHHHHHHhhcCCC---hHHHHHHHHHHHhcCCeeee
Q 025493 38 ERLIYDVIRSNKQDMGIWTRDMKRELKVNLP---DNIVTKSIKSLQNKSLIKEV 88 (252)
Q Consensus 38 e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~---~~~l~k~lK~Le~k~lIK~v 88 (252)
+.-|+++|.+ +| ..+...+|..++ +++ ...+.+.|+.|...|++.+.
T Consensus 38 ~lgif~~L~~-~~-~~~t~~ela~~~--~~~~~~~~~l~rlLr~L~~~gll~~~ 87 (352)
T 1fp2_A 38 EMNIPNIIQN-HG-KPISLSNLVSIL--QVPSSKIGNVRRLMRYLAHNGFFEII 87 (352)
T ss_dssp HTTHHHHHHH-HT-SCEEHHHHHHHH--TCCGGGHHHHHHHHHHHHHTTSEEEE
T ss_pred HCChhhhhhh-cC-CCccHHHHHHHh--CcCCCChHHHHHHHHHHHhCCeEEEe
Confidence 4456777877 64 368999999999 995 77999999999999999985
No 493
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=34.85 E-value=91 Score=25.59 Aligned_cols=50 Identities=16% Similarity=0.133 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhhhCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhcCeeEEE
Q 025493 125 FIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEV 183 (252)
Q Consensus 125 fV~~l~~~~~~~i~~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyDgkIE~v 183 (252)
+.+..+..++..|+ .+..|..||++.+. +|..-|.+.|+.|+-.|.|++.
T Consensus 17 l~d~~~~~IL~~L~-~~~~s~~eLA~~lg--------lS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 17 MLEDTRRKILKLLR-NKEMTISQLSEILG--------KTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHSHHHHHHHHHHT-TCCBCHHHHHHHHT--------CCHHHHHHHHHHHHHTTSEEEE
T ss_pred hCCHHHHHHHHHHH-cCCCCHHHHHHHHC--------cCHHHHHHHHHHHHHCCCEEEE
Confidence 34566778889998 57899999998653 6889999999999999999987
No 494
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=34.79 E-value=59 Score=28.48 Aligned_cols=45 Identities=4% Similarity=0.021 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeee
Q 025493 38 ERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEV 88 (252)
Q Consensus 38 e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~v 88 (252)
+.-|+++| . .| .+...+|..++ ++++..+.+.|+.|...|++.+.
T Consensus 38 ~l~i~~~l-~-~~--~~t~~eLA~~~--g~~~~~l~r~Lr~L~~~Gll~~~ 82 (374)
T 1qzz_A 38 TLRLVDHL-L-AG--ADTLAGLADRT--DTHPQALSRLVRHLTVVGVLEGG 82 (374)
T ss_dssp HTTHHHHH-H-TT--CCSHHHHHHHH--TCCHHHHHHHHHHHHHTTSEECC
T ss_pred HcChHHHH-h-CC--CCCHHHHHHHh--CcCHHHHHHHHHHHhhCCCEEEe
Confidence 33456666 3 33 48889999999 99999999999999999999874
No 495
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=34.64 E-value=65 Score=27.85 Aligned_cols=46 Identities=9% Similarity=0.055 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeee
Q 025493 37 HERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEV 88 (252)
Q Consensus 37 ~e~~vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~v 88 (252)
-|.-|+++|.+ | ++...+|..++ +++...+.+.|..|...|++.+.
T Consensus 26 ~~lglf~~l~~--g--~~t~~elA~~~--~~~~~~l~rlLr~l~~~gl~~~~ 71 (332)
T 3i53_A 26 ATLRVADHIAA--G--HRTAAEIASAA--GAHADSLDRLLRHLVAVGLFTRD 71 (332)
T ss_dssp HHHTHHHHHHT--T--CCBHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHcChHHHHhc--C--CCCHHHHHHHH--CcCHHHHHHHHHHHHhCCcEEec
Confidence 34557777754 3 79999999999 99999999999999999999975
No 496
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=34.55 E-value=31 Score=27.58 Aligned_cols=44 Identities=7% Similarity=0.152 Sum_probs=35.3
Q ss_pred CCChHHHHHHHHHHhhcCCCcccHHHHHHHhhcC-----CChHHHHHHHHHH
Q 025493 33 SLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVN-----LPDNIVTKSIKSL 79 (252)
Q Consensus 33 ~l~~~e~~vy~~I~~~ag~~GIw~~dik~~~~~~-----l~~~~l~k~lK~L 79 (252)
.||+-|+.|+.++.+ ..++-+..++|-.+. . +..++|...++.|
T Consensus 143 ~Lt~rE~~vL~~l~~-~~~~~~s~~~Ia~~l--~~~~~~~s~~tv~~~i~~l 191 (223)
T 2hqr_A 143 EVKGKPFEVLTHLAR-HRDQIVSKEQLLDAI--WEEPEMVTPNVIEVAINQI 191 (223)
T ss_dssp CCCSTTTHHHHHHHH-TCSEEEEHHHHHHHH--CCSSCSCGGGTHHHHHHHH
T ss_pred ecCHHHHHHHHHHHh-CCCCcCCHHHHHHHh--cCCccCCCCcCHHHHHHHH
Confidence 599999999999999 666779999999999 7 7777665554444
No 497
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=34.53 E-value=1.1e+02 Score=21.21 Aligned_cols=36 Identities=17% Similarity=0.345 Sum_probs=30.3
Q ss_pred hCCCCCHHHHHHHHHHcCCcceecCHHHHHHHHHHHhhc
Q 025493 139 KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLD 177 (252)
Q Consensus 139 ~~~~~T~~~I~~~i~~~~i~~~~Ls~~di~~IL~tLVyD 177 (252)
..++.+.+|+...++..|. .++.++++.+++.+-.|
T Consensus 42 ~~G~I~~~El~~~l~~~g~---~~~~~e~~~l~~~~D~d 77 (94)
T 2kz2_A 42 GNGYISAAELRHVMTNLGE---KLTDEEVDEMIREADID 77 (94)
T ss_dssp CCSCBCHHHHHHHHHHHTC---CCCHHHHHHHHHHHCTT
T ss_pred CcCcCCHHHHHHHHHHhCC---CCCHHHHHHHHHHhCCC
Confidence 4578999999999999884 58899999999977544
No 498
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=34.44 E-value=32 Score=23.46 Aligned_cols=35 Identities=9% Similarity=0.271 Sum_probs=25.3
Q ss_pred HHHHHHhhcCCCcccHHHHHHHhhcCCChHHHHHHHH
Q 025493 41 IYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIK 77 (252)
Q Consensus 41 vy~~I~~~ag~~GIw~~dik~~~~~~l~~~~l~k~lK 77 (252)
+...|++.-...|+.++++..++ |+++..|++..+
T Consensus 13 l~~~l~~~r~~~gltq~~lA~~~--gvs~~~is~~e~ 47 (80)
T 3kz3_A 13 LKAIWEKKKNELGLSYESVADKM--GMGQSAVAALFN 47 (80)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHT--TSCHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHh--CcCHHHHHHHHc
Confidence 44555553446788999999999 898888876653
No 499
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=34.40 E-value=11 Score=32.39 Aligned_cols=32 Identities=25% Similarity=0.325 Sum_probs=5.1
Q ss_pred cHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeee
Q 025493 55 WTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEV 88 (252)
Q Consensus 55 w~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~v 88 (252)
..++|..+. ++...+|.++|+.|++.|+|...
T Consensus 42 se~~La~~~--~vSr~tvr~Al~~L~~~G~i~~~ 73 (247)
T 2ra5_A 42 NEIELAARL--GLSRPTVRQAIQSLVDKGLLVRR 73 (247)
T ss_dssp ----------------------------CEEEEE
T ss_pred CHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEE
Confidence 467888999 99999999999999999999875
No 500
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=34.36 E-value=51 Score=24.81 Aligned_cols=41 Identities=10% Similarity=0.214 Sum_probs=35.6
Q ss_pred CCCcccHHHHHHHhhcCCChHHHHHHHHHHHhcCCeeeeec
Q 025493 50 QDMGIWTRDMKRELKVNLPDNIVTKSIKSLQNKSLIKEVVN 90 (252)
Q Consensus 50 g~~GIw~~dik~~~~~~l~~~~l~k~lK~Le~k~lIK~vks 90 (252)
=..||-..+||++..++++...+...|..|+..|.|+.-..
T Consensus 84 ~~~G~~keeLr~~~~~~~~~~~~~~ll~~l~~~g~l~~~~~ 124 (135)
T 2v9v_A 84 LRPGLAREELRSRYFSRLPARVYQALLEEWSREGRLQLAAN 124 (135)
T ss_dssp TSSCEEHHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEECSS
T ss_pred CccCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCEEecCC
Confidence 56899999999997446899999999999999999998543
Done!