BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>025494
MKRHTRSSFAIGLSLSTAFLVIVVRAFIVRRSRYNRPGSVEDLVRRGQLRSDRRGISRPL
KYEDPFNNPLVKVGKSNSTMEMCGKVYRLAPITLTKEQQTIHQKRRSRAYQWKRPTIFLK
EGDLIPPDVDPDTVRWIPANHPFATTANDIDEDLAQNNVYQKQGVPFRIRAEHEALQKKL
EALQNEQKLNKLVIDSSNAKDFERAFKLNPKSEEPLDQNPFVNQSGDLRPPRPDQAPNGY
DSNSSSEEMQKP

High Scoring Gene Products

Symbol, full name Information P value
MCD1
AT1G20830 		protein from Arabidopsis thaliana 8.0e-85

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  025494
        (252 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2030512 - symbol:MCD1 "AT1G20830" species:3702...   849  8.0e-85   1


>TAIR|locus:2030512 [details] [associations]
            symbol:MCD1 "AT1G20830" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009941
            "chloroplast envelope" evidence=IDA] [GO:0009706 "chloroplast inner
            membrane" evidence=IDA] [GO:0010020 "chloroplast fission"
            evidence=IMP] EMBL:CP002684 GO:GO:0009706 GO:GO:0010020
            EMBL:BT006034 EMBL:AK118972 IPI:IPI00527413 RefSeq:NP_173507.1
            UniGene:At.41684 PaxDb:Q8GWA7 PRIDE:Q8GWA7
            EnsemblPlants:AT1G20830.1 GeneID:838675 KEGG:ath:AT1G20830
            TAIR:At1g20830 eggNOG:NOG256126 InParanoid:Q8GWA7 OMA:YVVRKSR
            PhylomeDB:Q8GWA7 ProtClustDB:CLSN2679435 ArrayExpress:Q8GWA7
            Genevestigator:Q8GWA7 Uniprot:Q8GWA7
        Length = 349

 Score = 849 (303.9 bits), Expect = 8.0e-85, P = 8.0e-85
 Identities = 164/230 (71%), Positives = 194/230 (84%)

Query:     1 MKRHTRSSFAIGLSLSTAFLVIVVRAFIVRRSRYN-RPGSVEDLVRRGQLRS-DRRGISR 58
             MK+ + +S  IG+ ++   LV  +RA++VR+SR N R GSV DLVRRGQLRS DRRGIS+
Sbjct:   111 MKKCSVNSIWIGVCITATVLVAAIRAYVVRKSRDNQRAGSVADLVRRGQLRSGDRRGISK 170

Query:    59 PLKYEDPFNNPLVKVGKSNSTMEMCGKVYRLAPITLTKEQQTIHQKRRSRAYQWKRPTIF 118
              L YEDPFNNP VK+ K +ST+EMCGKVYRLAP+TLT+++QTIHQKRRSRAYQWKRPTIF
Sbjct:   171 SLNYEDPFNNPFVKLDKGSSTVEMCGKVYRLAPVTLTEKEQTIHQKRRSRAYQWKRPTIF 230

Query:   119 LKEGDLIPPDVDPDTVRWIPANHPFATTANDIDEDLAQNNVYQKQGVPFRIRAEHEALQK 178
             LKEGD IPPDVDPDTVRWIPANHPFATT +DID+DLAQNNVYQKQGVPFRIRAEHEA+QK
Sbjct:   231 LKEGDSIPPDVDPDTVRWIPANHPFATTVSDIDQDLAQNNVYQKQGVPFRIRAEHEAMQK 290

Query:   179 KLEALQNEQKLNKLVIDSSNAKDFERAFKLNPKSE-EPLDQNPFVNQSGD 227
             KLEALQNE+KLN L IDS NA+DF+R +K + K E E + +N   N +G+
Sbjct:   291 KLEALQNEEKLNNLSIDSQNARDFQRPYKFSAKLEGENIQKNSQENHTGN 340


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.133   0.385    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      252       252   0.00082  114 3  11 22  0.49    33
                                                     32  0.47    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  593 (63 KB)
  Total size of DFA:  180 KB (2104 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  27.68u 0.13s 27.81t   Elapsed:  00:00:01
  Total cpu time:  27.68u 0.13s 27.81t   Elapsed:  00:00:01
  Start:  Fri May 10 11:14:15 2013   End:  Fri May 10 11:14:16 2013

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