Query 025494
Match_columns 252
No_of_seqs 16 out of 18
Neff 1.8
Searched_HMMs 46136
Date Fri Mar 29 06:24:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025494.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025494hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14575 EphA2_TM: Ephrin type 86.3 0.8 1.7E-05 34.2 3.0 8 58-65 55-62 (75)
2 KOG3647 Predicted coiled-coil 60.3 6.7 0.00014 37.4 2.4 29 168-204 144-172 (338)
3 PF05977 MFS_3: Transmembrane 59.1 36 0.00078 32.7 7.0 78 82-186 426-508 (524)
4 PF12669 P12: Virus attachment 57.1 12 0.00025 27.1 2.6 25 8-32 1-25 (58)
5 TIGR03141 cytochro_ccmD heme e 55.7 7.9 0.00017 26.4 1.5 40 8-47 5-44 (45)
6 PF05597 Phasin: Poly(hydroxya 50.5 13 0.00029 30.7 2.4 27 157-185 97-123 (132)
7 COG5665 NOT5 CCR4-NOT transcri 42.5 30 0.00065 34.7 3.8 81 117-209 91-177 (548)
8 KOG3400 RNA polymerase subunit 40.1 13 0.00028 32.1 0.8 11 80-90 89-99 (143)
9 PF04995 CcmD: Heme exporter p 40.1 18 0.0004 24.5 1.4 40 9-48 5-44 (46)
10 PF06390 NESP55: Neuroendocrin 39.4 7.7 0.00017 35.9 -0.7 22 104-127 2-23 (257)
11 PF15050 SCIMP: SCIMP protein 37.6 40 0.00086 28.9 3.3 42 7-61 6-48 (133)
12 COG2929 Uncharacterized protei 37.4 12 0.00027 30.0 0.3 18 149-167 5-22 (93)
13 PRK14126 cell division protein 36.4 22 0.00048 27.0 1.5 18 74-91 5-22 (85)
14 PF13600 DUF4140: N-terminal d 36.1 68 0.0015 23.9 4.1 16 124-139 30-45 (104)
15 PF14698 ASL_C2: Argininosucci 35.7 13 0.00028 27.1 0.2 21 145-171 2-22 (70)
16 PF06874 FBPase_2: Firmicute f 35.4 22 0.00047 36.6 1.7 34 70-103 330-374 (640)
17 KOG0250 DNA repair protein RAD 32.8 26 0.00056 38.0 1.8 47 5-51 62-110 (1074)
18 PF13908 Shisa: Wnt and FGF in 32.5 28 0.0006 28.5 1.6 22 7-28 78-99 (179)
19 PF11935 DUF3453: Domain of un 32.4 20 0.00044 31.0 0.8 15 133-147 92-106 (239)
20 PF00280 potato_inhibit: Potat 32.1 15 0.00032 27.1 -0.0 20 116-135 28-47 (63)
21 cd08153 srpA_like Catalase-lik 31.8 65 0.0014 28.5 3.9 72 68-147 158-243 (295)
22 PF07225 NDUF_B4: NADH-ubiquin 31.8 50 0.0011 27.5 2.9 41 5-53 79-119 (125)
23 COG1006 MnhC Multisubunit Na+/ 31.0 52 0.0011 27.1 2.9 21 8-28 79-99 (115)
24 KOG3591 Alpha crystallins [Pos 30.7 22 0.00047 30.3 0.7 53 70-135 64-133 (173)
25 COG2975 Uncharacterized protei 30.6 22 0.00047 27.3 0.6 9 127-135 18-26 (64)
26 PF13549 ATP-grasp_5: ATP-gras 30.0 22 0.00048 31.0 0.6 44 62-105 118-162 (222)
27 PF15468 DUF4636: Domain of un 29.2 56 0.0012 30.4 3.0 95 5-114 37-137 (243)
28 PF01102 Glycophorin_A: Glycop 27.2 68 0.0015 26.5 3.0 17 19-35 78-94 (122)
29 PHA03152 hypothetical protein; 27.1 70 0.0015 27.6 3.1 36 171-207 98-133 (138)
30 TIGR01837 PHA_granule_1 poly(h 26.9 50 0.0011 26.3 2.1 32 157-192 84-115 (118)
31 PF08492 SRP72: SRP72 RNA-bind 26.3 35 0.00076 25.2 1.1 13 127-139 39-51 (59)
32 PF07407 Seadorna_VP6: Seadorn 26.1 65 0.0014 31.8 3.1 42 139-188 22-63 (420)
33 PF13874 Nup54: Nucleoporin co 25.8 21 0.00046 28.8 -0.2 29 155-185 93-121 (141)
34 PF14851 FAM176: FAM176 family 25.4 61 0.0013 27.8 2.5 20 5-24 22-41 (153)
35 PRK12659 putative monovalent c 25.2 77 0.0017 25.5 2.9 19 9-27 81-99 (117)
36 COG4391 Uncharacterized protei 25.1 59 0.0013 24.8 2.1 29 63-91 31-62 (62)
37 PF11767 SET_assoc: Histone ly 24.9 37 0.00081 25.2 1.0 15 100-114 14-28 (66)
38 PRK06731 flhF flagellar biosyn 24.1 34 0.00074 30.7 0.8 30 107-136 232-261 (270)
39 PRK12660 putative monovalent c 24.1 83 0.0018 25.1 2.9 20 9-28 78-97 (114)
40 PLN00084 photosystem II subuni 24.0 61 0.0013 29.5 2.3 20 7-26 70-89 (214)
41 PF11712 Vma12: Endoplasmic re 23.3 80 0.0017 25.4 2.7 31 170-200 21-51 (142)
42 PF10907 DUF2749: Protein of u 23.3 37 0.0008 26.2 0.7 34 9-42 5-38 (66)
43 PF03242 LEA_3: Late embryogen 23.1 46 0.00099 26.4 1.2 13 130-142 67-79 (93)
44 PF05867 DUF851: Protein of un 22.6 34 0.00074 31.6 0.5 36 128-171 92-127 (242)
45 PRK07946 putative monovalent c 22.0 91 0.002 27.1 2.9 34 8-42 80-113 (163)
46 COG0511 AccB Biotin carboxyl c 21.4 50 0.0011 26.7 1.2 30 77-137 72-101 (140)
47 PRK10722 hypothetical protein; 20.3 2.8E+02 0.006 25.9 5.8 40 60-112 66-105 (247)
48 PF03870 RNA_pol_Rpb8: RNA pol 20.2 47 0.001 28.0 0.8 10 81-90 85-94 (138)
49 PF04977 DivIC: Septum formati 20.0 1.1E+02 0.0023 21.1 2.4 46 168-214 21-72 (80)
50 KOG2446 Glucose-6-phosphate is 20.0 86 0.0019 32.0 2.7 110 70-203 153-268 (546)
No 1
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=86.33 E-value=0.8 Score=34.20 Aligned_cols=8 Identities=63% Similarity=1.215 Sum_probs=4.3
Q ss_pred CCCccCCC
Q 025494 58 RPLKYEDP 65 (252)
Q Consensus 58 ~plkYeDP 65 (252)
-|-+||||
T Consensus 55 DP~TYEDP 62 (75)
T PF14575_consen 55 DPHTYEDP 62 (75)
T ss_dssp -GGGSSSH
T ss_pred CcccccCH
Confidence 45566665
No 2
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=60.34 E-value=6.7 Score=37.44 Aligned_cols=29 Identities=41% Similarity=0.611 Sum_probs=23.2
Q ss_pred chhhhHHHHHHHHHHhhhHhhhhhccCCCcchhhhhh
Q 025494 168 RIRAEHEALQKKLEALQNEQKLNKLVIDSSNAKDFER 204 (252)
Q Consensus 168 RikAEHEALq~klea~~neqklnkl~~d~~n~k~~eR 204 (252)
|-|+|.|.+|++||+||. |-|.-|.+||+
T Consensus 144 rrk~ElEr~rkRle~Lqs--------iRP~~MdEyE~ 172 (338)
T KOG3647|consen 144 RRKAELERTRKRLEALQS--------IRPAHMDEYED 172 (338)
T ss_pred HHHHHHHHHHHHHHHHHh--------cchHHHHHHHH
Confidence 568999999999999997 55666666654
No 3
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=59.11 E-value=36 Score=32.70 Aligned_cols=78 Identities=32% Similarity=0.552 Sum_probs=49.8
Q ss_pred ccceeeeeccceecHHHHHHHHhhhhc----cccccCceeeeccCCCCCCCC-CCCcceeecCCCCcccccccccHHHHh
Q 025494 82 MCGKVYRLAPITLTKEQQTIHQKRRSR----AYQWKRPTIFLKEGDLIPPDV-DPDTVRWIPANHPFATTANDIDEDLAQ 156 (252)
Q Consensus 82 m~GK~yRLaPv~LT~eqq~~HQkRRsr----AYqWKRPtvFLkEGdsvPpdV-DPdtVRWIPaNHPFAtt~s~iDEdlAq 156 (252)
|---+||++|=.-.+=..+||+.||+| ||+|. +| .|+ ||+ ||+-.=| +.| -.|-+-|
T Consensus 426 ~v~~~y~i~~~~~~~f~~~~~~~~~~r~r~ga~~w~---~~--------~d~~~~~--~~~e~~~-~~~----w~~~~r~ 487 (524)
T PF05977_consen 426 MVTIEYRIAPEDAAAFLAAMRELRRIRRRDGARRWG---LF--------RDLEDPG--RWVERFH-VES----WLEHLRQ 487 (524)
T ss_pred EEEEEEEECcccHHHHHHHHHHHHHHHhhcChhhce---ee--------eccCCCC--eEEEEEe-CCC----HHHHHHH
Confidence 555789999988887778888877666 99994 33 222 233 7875433 111 1222222
Q ss_pred cccccccCCccchhhhHHHHHHHHHHhhhH
Q 025494 157 NNVYQKQGVPFRIRAEHEALQKKLEALQNE 186 (252)
Q Consensus 157 ~NVyQk~GVP~RikAEHEALq~klea~~ne 186 (252)
+ -|+.+...++|+++.++...
T Consensus 488 ~---------~r~t~~d~~~~~~~~~~~~~ 508 (524)
T PF05977_consen 488 H---------ERVTQADRELQERLRAFHRG 508 (524)
T ss_pred h---------ccCCHhhHHHHHHHHHhcCC
Confidence 1 37878888888888887653
No 4
>PF12669 P12: Virus attachment protein p12 family
Probab=57.12 E-value=12 Score=27.07 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=15.4
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhcc
Q 025494 8 SFAIGLSLSTAFLVIVVRAFIVRRS 32 (252)
Q Consensus 8 nf~~~~cv~~a~l~~~~r~~v~r~~ 32 (252)
|+++++.|+++++.+++|.++.+++
T Consensus 1 tiII~~Ii~~~~~~v~~r~~~k~~K 25 (58)
T PF12669_consen 1 TIIIGIIILAAVAYVAIRKFIKDKK 25 (58)
T ss_pred CeeHHHHHHHHHHHHHHHHHHHHhh
Confidence 5667766666666556677664433
No 5
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=55.68 E-value=7.9 Score=26.37 Aligned_cols=40 Identities=18% Similarity=0.108 Sum_probs=23.9
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhcccCCCCCchHHHHHhc
Q 025494 8 SFAIGLSLSTAFLVIVVRAFIVRRSRYNRPGSVEDLVRRG 47 (252)
Q Consensus 8 nf~~~~cv~~a~l~~~~r~~v~r~~~~~~~GSVaDLvRRG 47 (252)
-|-+|.+.+++++++++-.+....+++...-.++.+-+|+
T Consensus 5 ~~yVW~sYg~t~l~l~~li~~~~~~~r~~~~~l~~~~~r~ 44 (45)
T TIGR03141 5 AFYVWLAYGITALVLAGLILWSLLDRRRLLRELRRLEARE 44 (45)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3567888888888877666555444444344444444443
No 6
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=50.51 E-value=13 Score=30.68 Aligned_cols=27 Identities=30% Similarity=0.534 Sum_probs=23.8
Q ss_pred cccccccCCccchhhhHHHHHHHHHHhhh
Q 025494 157 NNVYQKQGVPFRIRAEHEALQKKLEALQN 185 (252)
Q Consensus 157 ~NVyQk~GVP~RikAEHEALq~klea~~n 185 (252)
+++..+-|||+ +.|.+||..|+.+|..
T Consensus 97 ~~aL~rLgvPs--~~dv~~L~~rId~L~~ 123 (132)
T PF05597_consen 97 ARALNRLGVPS--RKDVEALSARIDQLTA 123 (132)
T ss_pred HHHHHhcCCCC--HHHHHHHHHHHHHHHH
Confidence 46788999999 6899999999999987
No 7
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=42.47 E-value=30 Score=34.71 Aligned_cols=81 Identities=28% Similarity=0.336 Sum_probs=55.9
Q ss_pred eeeccCCCCCCCCCC------CcceeecCCCCcccccccccHHHHhcccccccCCccchhhhHHHHHHHHHHhhhHhhhh
Q 025494 117 IFLKEGDLIPPDVDP------DTVRWIPANHPFATTANDIDEDLAQNNVYQKQGVPFRIRAEHEALQKKLEALQNEQKLN 190 (252)
Q Consensus 117 vFLkEGdsvPpdVDP------dtVRWIPaNHPFAtt~s~iDEdlAq~NVyQk~GVP~RikAEHEALq~klea~~neqkln 190 (252)
-|-|||=++|.-+|| |+|-||- +-+||---|--.|...-.-+|+. -||--|.+||-.-. ||.
T Consensus 91 ~fske~ls~~~~~dpke~~k~d~i~~i~---------~~~~el~~q~e~~ea~e~e~~~e-rh~~h~~~le~i~~--~l~ 158 (548)
T COG5665 91 QFSKEALTNPDIIDPKELKKRDQVLFIH---------DCLDELQKQLEQYEAQENEEQTE-RHEFHIANLENILK--KLQ 158 (548)
T ss_pred HhhHhhccCcccCChhHhccccceehHH---------HHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHH--HHh
Confidence 488999999999999 7899993 45666555555666555445543 36666777765432 455
Q ss_pred hccCCCcchhhhhhhhhcC
Q 025494 191 KLVIDSSNAKDFERAFKLN 209 (252)
Q Consensus 191 kl~~d~~n~k~~eR~~~~~ 209 (252)
.--|||.-..+|.--+..-
T Consensus 159 n~~~~pe~v~~~q~di~yy 177 (548)
T COG5665 159 NNEMDPEPVEEFQDDIKYY 177 (548)
T ss_pred ccCCChhhHHHHHHHHHHH
Confidence 5678888888887766543
No 8
>KOG3400 consensus RNA polymerase subunit 8 [Transcription]
Probab=40.14 E-value=13 Score=32.11 Aligned_cols=11 Identities=55% Similarity=0.914 Sum_probs=9.2
Q ss_pred hhccceeeeec
Q 025494 80 MEMCGKVYRLA 90 (252)
Q Consensus 80 v~m~GK~yRLa 90 (252)
--||||+||+-
T Consensus 89 YvMyGkvYriE 99 (143)
T KOG3400|consen 89 YVMYGKVYRIE 99 (143)
T ss_pred EEEeeEEEEEe
Confidence 45999999984
No 9
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=40.07 E-value=18 Score=24.55 Aligned_cols=40 Identities=23% Similarity=0.138 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhcccCCCCCchHHHHHhcc
Q 025494 9 FAIGLSLSTAFLVIVVRAFIVRRSRYNRPGSVEDLVRRGQ 48 (252)
Q Consensus 9 f~~~~cv~~a~l~~~~r~~v~r~~~~~~~GSVaDLvRRGQ 48 (252)
+-+|.|.+++++++++-.+....+++.-.-.++.+.+|+|
T Consensus 5 ~yVW~sYg~t~~~l~~l~~~~~~~~r~~~~~l~~~~~r~~ 44 (46)
T PF04995_consen 5 FYVWSSYGVTALVLAGLIVWSLRRRRRLRKELKRLEAREQ 44 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHc
Confidence 4567777777777766655544444444444555555554
No 10
>PF06390 NESP55: Neuroendocrine-specific golgi protein P55 (NESP55); InterPro: IPR009434 This family consists of several mammalian neuroendocrine-specific golgi protein P55 (NESP55) sequences. NESP55 is a novel member of the chromogranin family and is a soluble, acidic, heat-stable secretory protein that is expressed exclusively in endocrine and nervous tissues, although less widely than chromogranins [].
Probab=39.36 E-value=7.7 Score=35.93 Aligned_cols=22 Identities=55% Similarity=0.865 Sum_probs=15.0
Q ss_pred hhhhccccccCceeeeccCCCCCC
Q 025494 104 KRRSRAYQWKRPTIFLKEGDLIPP 127 (252)
Q Consensus 104 kRRsrAYqWKRPtvFLkEGdsvPp 127 (252)
-|||||+||.|-.-- =.|..||
T Consensus 2 drrsra~~~rrarh~--y~dlcpp 23 (257)
T PF06390_consen 2 DRRSRAQQWRRARHN--YNDLCPP 23 (257)
T ss_pred cchhHHHHHHHhhhc--ccccCCc
Confidence 489999999986533 2355554
No 11
>PF15050 SCIMP: SCIMP protein
Probab=37.60 E-value=40 Score=28.92 Aligned_cols=42 Identities=33% Similarity=0.473 Sum_probs=24.8
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhhcccCCCCCchHHHHHhcccccCC-cCCCCCCc
Q 025494 7 SSFAIGLSLSTAFLVIVVRAFIVRRSRYNRPGSVEDLVRRGQLRSDR-RGISRPLK 61 (252)
Q Consensus 7 ~nf~~~~cv~~a~l~~~~r~~v~r~~~~~~~GSVaDLvRRGQLrSdr-Rgis~plk 61 (252)
-||+|-++||+.++-+. ..+|+. -|-|-|||-|+ --|++|++
T Consensus 6 ~nFWiiLAVaII~vS~~-lglIly------------CvcR~~lRqGkkweiakp~k 48 (133)
T PF15050_consen 6 DNFWIILAVAIILVSVV-LGLILY------------CVCRWQLRQGKKWEIAKPLK 48 (133)
T ss_pred hchHHHHHHHHHHHHHH-HHHHHH------------HHHHHHHHccccceeccchh
Confidence 58999999996655443 333322 13344555544 46777775
No 12
>COG2929 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.41 E-value=12 Score=30.02 Aligned_cols=18 Identities=44% Similarity=0.800 Sum_probs=15.5
Q ss_pred cccHHHHhcccccccCCcc
Q 025494 149 DIDEDLAQNNVYQKQGVPF 167 (252)
Q Consensus 149 ~iDEdlAq~NVyQk~GVP~ 167 (252)
+-||+-|+-|. |||||+|
T Consensus 5 ewDe~Ka~sNl-~KHGv~F 22 (93)
T COG2929 5 EWDENKARSNL-EKHGVSF 22 (93)
T ss_pred EeCchHhhhhH-HHcCCCH
Confidence 45888899995 9999999
No 13
>PRK14126 cell division protein ZapA; Provisional
Probab=36.39 E-value=22 Score=27.04 Aligned_cols=18 Identities=22% Similarity=0.469 Sum_probs=14.5
Q ss_pred cCCCchhhccceeeeecc
Q 025494 74 GKSNSTMEMCGKVYRLAP 91 (252)
Q Consensus 74 ~k~~stv~m~GK~yRLaP 91 (252)
.|..-.|.++|+.|+|++
T Consensus 5 ~k~~v~V~I~G~~Y~i~~ 22 (85)
T PRK14126 5 KKTRINVEIYGQQYTIVG 22 (85)
T ss_pred CCceEEEEECCEEEEecC
Confidence 344567899999999996
No 14
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=36.14 E-value=68 Score=23.85 Aligned_cols=16 Identities=38% Similarity=0.727 Sum_probs=12.8
Q ss_pred CCCCCCCCCcceeecC
Q 025494 124 LIPPDVDPDTVRWIPA 139 (252)
Q Consensus 124 svPpdVDPdtVRWIPa 139 (252)
.||+.+||++||==..
T Consensus 30 ~Lp~~~d~~Sl~V~~~ 45 (104)
T PF13600_consen 30 GLPPSLDPDSLRVSGE 45 (104)
T ss_pred CCCcccCCCcEEEEec
Confidence 5899999999986433
No 15
>PF14698 ASL_C2: Argininosuccinate lyase C-terminal; PDB: 1XWO_A 2E9F_A 1TJW_C 1TJU_A 1DCN_B 1K7W_B 1HY1_C 1TJV_B 1AUW_A 1U15_B ....
Probab=35.66 E-value=13 Score=27.12 Aligned_cols=21 Identities=43% Similarity=0.757 Sum_probs=12.2
Q ss_pred cccccccHHHHhcccccccCCccchhh
Q 025494 145 TTANDIDEDLAQNNVYQKQGVPFRIRA 171 (252)
Q Consensus 145 tt~s~iDEdlAq~NVyQk~GVP~RikA 171 (252)
+|++|+-+-|. ++ |+|||---
T Consensus 2 ~~ATdlAD~LV-----r~-GipFR~AH 22 (70)
T PF14698_consen 2 STATDLADYLV-----RK-GIPFREAH 22 (70)
T ss_dssp GGHHHHHHHHH-----HT-TS-HHHHH
T ss_pred ccHHHHHHHHH-----Hc-CCCHHHHH
Confidence 35566655554 34 99999643
No 16
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=35.41 E-value=22 Score=36.63 Aligned_cols=34 Identities=32% Similarity=0.517 Sum_probs=29.3
Q ss_pred ceeecCCCchhhccceeeee-----------ccceecHHHHHHHH
Q 025494 70 LVKVGKSNSTMEMCGKVYRL-----------APITLTKEQQTIHQ 103 (252)
Q Consensus 70 lVKi~k~~stv~m~GK~yRL-----------aPv~LT~eqq~~HQ 103 (252)
|=|||-.+.||.+-||+|-| .|-.||+|++++=+
T Consensus 330 L~kId~~~gti~i~gk~y~L~d~~FPTiDp~~Py~LT~eE~~vi~ 374 (640)
T PF06874_consen 330 LDKIDYEKGTITIDGKEYPLNDTNFPTIDPEDPYELTEEEEEVID 374 (640)
T ss_pred HhhcCccCCEEEECCEEEeecCCCCCCCCCCCcccCCHHHHHHHH
Confidence 44999999999999999998 48899999887643
No 17
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=32.79 E-value=26 Score=38.00 Aligned_cols=47 Identities=30% Similarity=0.356 Sum_probs=36.4
Q ss_pred cccchhHH--HHHHHHHHHHHHHHhhhhcccCCCCCchHHHHHhccccc
Q 025494 5 TRSSFAIG--LSLSTAFLVIVVRAFIVRRSRYNRPGSVEDLVRRGQLRS 51 (252)
Q Consensus 5 ~g~nf~~~--~cv~~a~l~~~~r~~v~r~~~~~~~GSVaDLvRRGQLrS 51 (252)
...||+.| ..-=-|+|+|..-++-.|-+..+|+.|+-|||+-|+--.
T Consensus 62 ~~vNfI~G~NGSGKSAIltAl~lglG~rAs~tnRgsslK~lIK~G~~~A 110 (1074)
T KOG0250|consen 62 PRVNFIVGNNGSGKSAILTALTLGLGGRASATNRGSSLKDLIKDGCSSA 110 (1074)
T ss_pred CCceEeecCCCCcHHHHHHHHHHhhccccccccchhhHHHHHhCCCcce
Confidence 34677776 444457777777788888999999999999999998543
No 18
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=32.51 E-value=28 Score=28.52 Aligned_cols=22 Identities=14% Similarity=0.398 Sum_probs=10.3
Q ss_pred cchhHHHHHHHHHHHHHHHHhh
Q 025494 7 SSFAIGLSLSTAFLVIVVRAFI 28 (252)
Q Consensus 7 ~nf~~~~cv~~a~l~~~~r~~v 28 (252)
.+++.|+.++++++|++|-.++
T Consensus 78 ~~iivgvi~~Vi~Iv~~Iv~~~ 99 (179)
T PF13908_consen 78 TGIIVGVICGVIAIVVLIVCFC 99 (179)
T ss_pred eeeeeehhhHHHHHHHhHhhhe
Confidence 3445554444555554444443
No 19
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=32.42 E-value=20 Score=30.99 Aligned_cols=15 Identities=27% Similarity=0.653 Sum_probs=9.2
Q ss_pred cceeecCCCCccccc
Q 025494 133 TVRWIPANHPFATTA 147 (252)
Q Consensus 133 tVRWIPaNHPFAtt~ 147 (252)
.+-|||.||||-...
T Consensus 92 SL~~vp~~Hp~l~~~ 106 (239)
T PF11935_consen 92 SLSSVPPNHPLLNPQ 106 (239)
T ss_dssp -GGGS-TT-SSS-HH
T ss_pred CHHHcCCCCCcCCHH
Confidence 467999999998754
No 20
>PF00280 potato_inhibit: Potato inhibitor I family; InterPro: IPR000864 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family of proteinase inhibitors belong to MEROPS inhibitor family I13, clan IG. They inhibit peptidases of the S1 (IPR001254 from INTERPRO) and S8 (IPR000209 from INTERPRO) families []. Potato inhibitor type I sequences are not solely restricted to potatoes but are found in other plant species for example: barley endosperm chymotrypsin inhibitor [], and pumpkin trypsin inhibitor. Exceptions are found in leech's, e.g.Hirudo medicinalis (Medicinal leech), but not other metazoa []. In general, the proteins have retained a specificity towards chymotrypsin-like and elastase-like proteases []. Structurally these inhibitors are small (60 to 90 residues) and in contrast with other families of protease inhibitors, they lack disulphide bonds. The inhibitor is a wedge-shaped molecule, its pointed edge formed by the protease-binding loop, which contains the scissile bond. The loop binds tightly to the protease active site, subsequent cleavage of the scissile bond causing inhibition of the enzyme []. The inhibitors (designated type I and II) are synthesised in potato tubers, increasing in concentration as the tuber develops. Synthesis of the inhibitors throughout the plant is also induced by leaf damage; this systemic response being triggered by the release of a putative plant hormone []. Examples found in the bacteria and archaea are probable false positives.; GO: 0004867 serine-type endopeptidase inhibitor activity, 0009611 response to wounding; PDB: 1TEC_I 1SBN_I 1ACB_I 1EGP_A 3TEC_I 2SEC_I 1EGL_A 2TEC_I 1SIB_I 1MEE_I ....
Probab=32.15 E-value=15 Score=27.07 Aligned_cols=20 Identities=35% Similarity=0.497 Sum_probs=18.7
Q ss_pred eeeeccCCCCCCCCCCCcce
Q 025494 116 TIFLKEGDLIPPDVDPDTVR 135 (252)
Q Consensus 116 tvFLkEGdsvPpdVDPdtVR 135 (252)
.++|.+|..+|.|.+++-||
T Consensus 28 v~vlp~gs~vt~df~~~RVr 47 (63)
T PF00280_consen 28 VVVLPEGSPVTMDFRCDRVR 47 (63)
T ss_dssp EEEEETTSEEESSBETTEEE
T ss_pred EEEEeCCCCcCCCcCCCEEE
Confidence 46999999999999999998
No 21
>cd08153 srpA_like Catalase-like heme-binding proteins similar to the uncharacterized srpA. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes involved in the protection of cells from the toxic effects of peroxides. It catalyses the conversion of hydrogen peroxide to water and molecular oxygen. Several other related protein families share the catalase fold and bind to heme, but do not necessarily have catalase activity. This family contains uncharacterized proteins similar to the Synechococcus elongatus PCC 7942 periplasmic protein srpA, of mostly bacterial origin. The plasmid-encoded srpA is regulated by sulfate, but does not seem to function in its uptake or metabolism.
Probab=31.82 E-value=65 Score=28.55 Aligned_cols=72 Identities=19% Similarity=0.342 Sum_probs=45.2
Q ss_pred CcceeecCCCchhhccceeeeeccc----eecHHH----------HHHHHhhhhccccccCceeeeccCCCCCCCCCCCc
Q 025494 68 NPLVKVGKSNSTMEMCGKVYRLAPI----TLTKEQ----------QTIHQKRRSRAYQWKRPTIFLKEGDLIPPDVDPDT 133 (252)
Q Consensus 68 NPlVKi~k~~stv~m~GK~yRLaPv----~LT~eq----------q~~HQkRRsrAYqWKRPtvFLkEGdsvPpdVDPdt 133 (252)
|||.-+++.+.+ .+.| ||+.|. .|++++ +++.|.=+...+.|.==.-...+||+ ++--|
T Consensus 158 ~~f~f~~~~G~~--~~vk-~~~~P~~g~~~l~~~~~~~~~~d~l~~~l~~~l~~g~~~f~l~vQl~~~~d~----i~D~t 230 (295)
T cd08153 158 NAFYFTNANGKR--QPVR-WRFVPEDGVKYLSDEEAAKLGPDFLFDELAQRLAQGPVRWDLVLQLAEPGDP----TDDPT 230 (295)
T ss_pred eeEEEECCCCCE--EEEE-EEEEECCCCCCCCHHHhccCCcchhHHHHHHHHHhCCceEEEEEEEcCCCCc----CCCCC
Confidence 555544443221 2333 888885 366655 34666666667788777777788883 45568
Q ss_pred ceeecCCCCccccc
Q 025494 134 VRWIPANHPFATTA 147 (252)
Q Consensus 134 VRWIPaNHPFAtt~ 147 (252)
+.| |..|||-+-+
T Consensus 231 ~~W-pe~~p~~~vg 243 (295)
T cd08153 231 KPW-PADRKEVDAG 243 (295)
T ss_pred ccC-CCCCceeEEE
Confidence 999 6669996544
No 22
>PF07225 NDUF_B4: NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); InterPro: IPR009866 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family contains human NADH-ubiquinone oxidoreductase subunit NDUFB4 and related sequences.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=31.80 E-value=50 Score=27.46 Aligned_cols=41 Identities=27% Similarity=0.550 Sum_probs=24.2
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhhhcccCCCCCchHHHHHhcccccCC
Q 025494 5 TRSSFAIGLSLSTAFLVIVVRAFIVRRSRYNRPGSVEDLVRRGQLRSDR 53 (252)
Q Consensus 5 ~g~nf~~~~cv~~a~l~~~~r~~v~r~~~~~~~GSVaDLvRRGQLrSdr 53 (252)
.+-+..+|+++++ +.+++-.++++..+. .-.+++|-||| ||
T Consensus 79 TPktsllg~~~~v--~P~i~~~~~~KtdRD----~~E~~~r~G~~--dR 119 (125)
T PF07225_consen 79 TPKTSLLGLGFGV--VPLIFYYYVLKTDRD----RKEKLIRTGKL--DR 119 (125)
T ss_pred CchHHHHHHHHHH--HHHHHHHhhhccchh----HHHHHHhcCcc--ce
Confidence 3445566654433 344444555544443 35799999999 65
No 23
>COG1006 MnhC Multisubunit Na+/H+ antiporter, MnhC subunit [Inorganic ion transport and metabolism]
Probab=31.03 E-value=52 Score=27.07 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=18.6
Q ss_pred chhHHHHHHHHHHHHHHHHhh
Q 025494 8 SFAIGLSLSTAFLVIVVRAFI 28 (252)
Q Consensus 8 nf~~~~cv~~a~l~~~~r~~v 28 (252)
.++||||+.+.+|+++.|.|-
T Consensus 79 AIVIgfa~tal~L~l~~~~y~ 99 (115)
T COG1006 79 AIVIGFATTALALVLAYRAYK 99 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999875
No 24
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=30.74 E-value=22 Score=30.32 Aligned_cols=53 Identities=26% Similarity=0.470 Sum_probs=31.6
Q ss_pred ceeecCCCchhhccceeeeeccceec----HHHH---HHHHhhh----------hccccccCceeeeccCCCCCCCCCCC
Q 025494 70 LVKVGKSNSTMEMCGKVYRLAPITLT----KEQQ---TIHQKRR----------SRAYQWKRPTIFLKEGDLIPPDVDPD 132 (252)
Q Consensus 70 lVKi~k~~stv~m~GK~yRLaPv~LT----~eqq---~~HQkRR----------srAYqWKRPtvFLkEGdsvPpdVDPd 132 (252)
...+..+....++|=-|.-.+|=-|| ...- ..|..|+ +|.| .||+||||+
T Consensus 64 ~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~~~l~V~gkHeer~d~~G~v~R~F~R~y-------------~LP~~vdp~ 130 (173)
T KOG3591|consen 64 ASEIVNDKDKFEVNLDVHQFKPEELKVKTDDNTLEVEGKHEEKEDEHGYVSRSFVRKY-------------LLPEDVDPT 130 (173)
T ss_pred ccccccCCCcEEEEEEcccCcccceEEEeCCCEEEEEeeeccccCCCCeEEEEEEEEe-------------cCCCCCChh
Confidence 34555555666677677777773332 2222 2344453 2333 499999999
Q ss_pred cce
Q 025494 133 TVR 135 (252)
Q Consensus 133 tVR 135 (252)
+|+
T Consensus 131 ~V~ 133 (173)
T KOG3591|consen 131 SVT 133 (173)
T ss_pred heE
Confidence 986
No 25
>COG2975 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.56 E-value=22 Score=27.32 Aligned_cols=9 Identities=89% Similarity=1.446 Sum_probs=8.5
Q ss_pred CCCCCCcce
Q 025494 127 PDVDPDTVR 135 (252)
Q Consensus 127 pdVDPdtVR 135 (252)
|||||-|||
T Consensus 18 pdvDPktvr 26 (64)
T COG2975 18 PDVDPKTVR 26 (64)
T ss_pred CCCCcceee
Confidence 899999997
No 26
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=29.96 E-value=22 Score=30.99 Aligned_cols=44 Identities=25% Similarity=0.440 Sum_probs=31.9
Q ss_pred cCCCCCCcceeecCCCchhhccc-eeeeeccceecHHHHHHHHhh
Q 025494 62 YEDPFNNPLVKVGKSNSTMEMCG-KVYRLAPITLTKEQQTIHQKR 105 (252)
Q Consensus 62 YeDPFNNPlVKi~k~~stv~m~G-K~yRLaPv~LT~eqq~~HQkR 105 (252)
..||---|+|-+|-+...+|+++ ..|+|+|++.++-+..+++-|
T Consensus 118 ~~Dp~FGPvv~~G~GG~~vE~~~D~~~~l~Pl~~~~a~~mi~~l~ 162 (222)
T PF13549_consen 118 RRDPQFGPVVMFGLGGIFVELLKDVAFRLPPLSEADAREMIRELR 162 (222)
T ss_dssp EEETTTEEEEEEEE-STTHHHH---EEEESS--HHHHHHHHHTST
T ss_pred EECCCCCCEEEEcCCCceeeeecceEEeeCCCCHHHHHHHHHHHH
Confidence 46999999999999999999987 469999988766665555443
No 27
>PF15468 DUF4636: Domain of unknown function (DUF4636)
Probab=29.16 E-value=56 Score=30.37 Aligned_cols=95 Identities=22% Similarity=0.271 Sum_probs=53.3
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhhhcccCCCCCchHHHHHhcccccCCcCCCCCCccCCCCCCcceeecCCCchhhc-c
Q 025494 5 TRSSFAIGLSLSTAFLVIVVRAFIVRRSRYNRPGSVEDLVRRGQLRSDRRGISRPLKYEDPFNNPLVKVGKSNSTMEM-C 83 (252)
Q Consensus 5 ~g~nf~~~~cv~~a~l~~~~r~~v~r~~~~~~~GSVaDLvRRGQLrSdrRgis~plkYeDPFNNPlVKi~k~~stv~m-~ 83 (252)
+.-+|..|.||++.||+.+-|+.+-.+..+.... -| .....+++-+ ||+.-=.-|-+--+|.-.| -
T Consensus 37 ~iG~fLlWyfviilvLm~~~ras~Wmse~K~D~~-------sg----ts~s~ska~k--~~s~k~~sk~~~wds~~~mKK 103 (243)
T PF15468_consen 37 AIGSFLLWYFVIILVLMFFSRASVWMSEKKKDED-------SG----TSASVSKASK--DASCKRQSKDGAWDSSQKMKK 103 (243)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhccc-------CC----cccccccccc--chhhhhhccccchhHHHHhhc
Confidence 4568999999999999999999886554433111 11 1234445444 3333333333333333322 1
Q ss_pred ceeeeeccceecHHHHHH-----HHhhhhccccccC
Q 025494 84 GKVYRLAPITLTKEQQTI-----HQKRRSRAYQWKR 114 (252)
Q Consensus 84 GK~yRLaPv~LT~eqq~~-----HQkRRsrAYqWKR 114 (252)
-|--.|+||| +-+.|. -|+|-.|--||..
T Consensus 104 pKq~ql~pvt--dSEvalvnayleqRrar~~sqf~~ 137 (243)
T PF15468_consen 104 PKQNQLSPVT--DSEVALVNAYLEQRRARRHSQFSQ 137 (243)
T ss_pred cccccCCccc--chHHHHHHHhHHHHHHHHHHHHHH
Confidence 3456889994 444432 4555556667754
No 28
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=27.15 E-value=68 Score=26.46 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=8.6
Q ss_pred HHHHHHHHhhhhcccCC
Q 025494 19 FLVIVVRAFIVRRSRYN 35 (252)
Q Consensus 19 ~l~~~~r~~v~r~~~~~ 35 (252)
++++++-.|++|++++.
T Consensus 78 Ig~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 78 IGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 44445556666665554
No 29
>PHA03152 hypothetical protein; Provisional
Probab=27.10 E-value=70 Score=27.58 Aligned_cols=36 Identities=36% Similarity=0.449 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHhhhHhhhhhccCCCcchhhhhhhhh
Q 025494 171 AEHEALQKKLEALQNEQKLNKLVIDSSNAKDFERAFK 207 (252)
Q Consensus 171 AEHEALq~klea~~neqklnkl~~d~~n~k~~eR~~~ 207 (252)
+|-+.|...|..||| +=+.||.+++.|...|.|-+-
T Consensus 98 ~ee~~lln~l~~l~~-sf~s~~~~~tt~~~~f~~~~g 133 (138)
T PHA03152 98 AEEQNFKNHLITLQN-SFLSKLGPDTTGAIKFKRKHG 133 (138)
T ss_pred HHHHHHHHHHHHHHH-HHHHhcCcccccchhhhhhhc
Confidence 799999999999987 778999999999999988653
No 30
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=26.92 E-value=50 Score=26.31 Aligned_cols=32 Identities=31% Similarity=0.502 Sum_probs=25.1
Q ss_pred cccccccCCccchhhhHHHHHHHHHHhhhHhhhhhc
Q 025494 157 NNVYQKQGVPFRIRAEHEALQKKLEALQNEQKLNKL 192 (252)
Q Consensus 157 ~NVyQk~GVP~RikAEHEALq~klea~~neqklnkl 192 (252)
+++..+-|+|++ .|.++|..|+.+|.. +|++|
T Consensus 84 ~~~L~~lg~~tk--~ev~~L~~RI~~Le~--~l~~l 115 (118)
T TIGR01837 84 EQALNRLNIPSR--EEIEALSAKIEQLAV--QVEEL 115 (118)
T ss_pred HHHHHHcCCCCH--HHHHHHHHHHHHHHH--HHHHH
Confidence 478889999985 789999999998865 45443
No 31
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=26.33 E-value=35 Score=25.22 Aligned_cols=13 Identities=46% Similarity=1.163 Sum_probs=10.0
Q ss_pred CCCCCCcceeecC
Q 025494 127 PDVDPDTVRWIPA 139 (252)
Q Consensus 127 pdVDPdtVRWIPa 139 (252)
|++-||-=||||-
T Consensus 39 p~~~PDPERWLP~ 51 (59)
T PF08492_consen 39 PGKTPDPERWLPK 51 (59)
T ss_pred CCCCCCccccCch
Confidence 4566888899994
No 32
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=26.12 E-value=65 Score=31.77 Aligned_cols=42 Identities=26% Similarity=0.360 Sum_probs=30.9
Q ss_pred CCCCcccccccccHHHHhcccccccCCccchhhhHHHHHHHHHHhhhHhh
Q 025494 139 ANHPFATTANDIDEDLAQNNVYQKQGVPFRIRAEHEALQKKLEALQNEQK 188 (252)
Q Consensus 139 aNHPFAtt~s~iDEdlAq~NVyQk~GVP~RikAEHEALq~klea~~neqk 188 (252)
.||-....+-|=.-+|-+.| .|+|+|.++|+.|+|+|.+|-+
T Consensus 22 ~~~~~~~~~~~e~~aLr~EN--------~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 22 ENHELEGVSIDENFALRMEN--------HSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred ccccccccchhhhhhHHHHh--------HHHHHHHHHHHHHHHHHHHHhh
Confidence 47777665533333555666 5899999999999999977665
No 33
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=25.83 E-value=21 Score=28.75 Aligned_cols=29 Identities=31% Similarity=0.604 Sum_probs=5.7
Q ss_pred HhcccccccCCccchhhhHHHHHHHHHHhhh
Q 025494 155 AQNNVYQKQGVPFRIRAEHEALQKKLEALQN 185 (252)
Q Consensus 155 Aq~NVyQk~GVP~RikAEHEALq~klea~~n 185 (252)
++.-|+...|.| +..|-|.|..+|+++..
T Consensus 93 ~~~eilr~~g~~--l~~eEe~L~~~le~l~~ 121 (141)
T PF13874_consen 93 RKQEILRNRGYA--LSPEEEELRKRLEALEA 121 (141)
T ss_dssp HHHHHHHH-----------------------
T ss_pred HHHHHHHHcCCC--CCHHHHHHHHHHHHHHH
Confidence 455688999998 77889999999999877
No 34
>PF14851 FAM176: FAM176 family
Probab=25.36 E-value=61 Score=27.76 Aligned_cols=20 Identities=10% Similarity=0.147 Sum_probs=14.9
Q ss_pred cccchhHHHHHHHHHHHHHH
Q 025494 5 TRSSFAIGLSLSTAFLVIVV 24 (252)
Q Consensus 5 ~g~nf~~~~cv~~a~l~~~~ 24 (252)
.+.=|+.|||+|.++++.++
T Consensus 22 ~aLYFv~gVC~GLlLtLcll 41 (153)
T PF14851_consen 22 FALYFVSGVCAGLLLTLCLL 41 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34568999999988766554
No 35
>PRK12659 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=25.17 E-value=77 Score=25.49 Aligned_cols=19 Identities=26% Similarity=0.609 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 025494 9 FAIGLSLSTAFLVIVVRAF 27 (252)
Q Consensus 9 f~~~~cv~~a~l~~~~r~~ 27 (252)
++||+|++.+.|+.+.|.+
T Consensus 81 IVIg~Av~a~~lvl~~r~~ 99 (117)
T PRK12659 81 IVIGFGVQAFAIVLIKRAY 99 (117)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5778887777776666553
No 36
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.06 E-value=59 Score=24.78 Aligned_cols=29 Identities=31% Similarity=0.595 Sum_probs=19.5
Q ss_pred CCCCCCcceeec--CCCc-hhhccceeeeecc
Q 025494 63 EDPFNNPLVKVG--KSNS-TMEMCGKVYRLAP 91 (252)
Q Consensus 63 eDPFNNPlVKi~--k~~s-tv~m~GK~yRLaP 91 (252)
+-||..|=|-++ +++. +---||++|||+|
T Consensus 31 ~~p~~HPrV~L~mg~~gev~CPYC~t~y~l~~ 62 (62)
T COG4391 31 EPPNDHPRVFLDMGDEGEVVCPYCSTRYRLNP 62 (62)
T ss_pred CCCCCCCEEEEEcCCCCcEecCccccEEEecC
Confidence 446888877443 3332 3357999999986
No 37
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=24.89 E-value=37 Score=25.20 Aligned_cols=15 Identities=40% Similarity=0.813 Sum_probs=13.6
Q ss_pred HHHHhhhhccccccC
Q 025494 100 TIHQKRRSRAYQWKR 114 (252)
Q Consensus 100 ~~HQkRRsrAYqWKR 114 (252)
..|-|+|.|.|.|.|
T Consensus 14 v~d~K~~Lr~y~~~~ 28 (66)
T PF11767_consen 14 VEDFKKRLRKYRWDR 28 (66)
T ss_pred HHHHHHHHhcCCcce
Confidence 569999999999987
No 38
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=24.10 E-value=34 Score=30.66 Aligned_cols=30 Identities=10% Similarity=0.208 Sum_probs=24.3
Q ss_pred hccccccCceeeeccCCCCCCCCCCCccee
Q 025494 107 SRAYQWKRPTIFLKEGDLIPPDVDPDTVRW 136 (252)
Q Consensus 107 srAYqWKRPtvFLkEGdsvPpdVDPdtVRW 136 (252)
+=++.++.|..|+--|+.||.|+-+-+-.|
T Consensus 232 ~~~~~~~~Pi~~it~Gq~vp~di~~a~~~~ 261 (270)
T PRK06731 232 KIPAVSSAPIVLMTDGQDVKKNIHIATAEH 261 (270)
T ss_pred HHHHHHCcCEEEEeCCCCCCcchhhCCHHH
Confidence 446788999999999999999987655433
No 39
>PRK12660 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=24.09 E-value=83 Score=25.12 Aligned_cols=20 Identities=30% Similarity=0.658 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHHHHhh
Q 025494 9 FAIGLSLSTAFLVIVVRAFI 28 (252)
Q Consensus 9 f~~~~cv~~a~l~~~~r~~v 28 (252)
++||++++++.|+.+.|.+-
T Consensus 78 IVIg~av~a~lL~l~~r~~~ 97 (114)
T PRK12660 78 IVIGFGMTAFLLVLVYRTYK 97 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 57788877777777766553
No 40
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=24.00 E-value=61 Score=29.48 Aligned_cols=20 Identities=35% Similarity=0.524 Sum_probs=16.5
Q ss_pred cchhHHHHHHHHHHHHHHHH
Q 025494 7 SSFAIGLSLSTAFLVIVVRA 26 (252)
Q Consensus 7 ~nf~~~~cv~~a~l~~~~r~ 26 (252)
+=|++|+|++.+||+++-..
T Consensus 70 sv~~~w~~l~~~~l~~v~qg 89 (214)
T PLN00084 70 SVFILWLCLAAAFIAAVQQG 89 (214)
T ss_pred hHHHHHHHHHHHHHHHHHhh
Confidence 45889999999999887554
No 41
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=23.30 E-value=80 Score=25.35 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHHhhhHhhhhhccCCCcchh
Q 025494 170 RAEHEALQKKLEALQNEQKLNKLVIDSSNAK 200 (252)
Q Consensus 170 kAEHEALq~klea~~neqklnkl~~d~~n~k 200 (252)
..|.+|+..||.+.|+|++-++++-|....+
T Consensus 21 s~E~~a~le~Lr~~~ee~eY~~mv~~~~~~~ 51 (142)
T PF11712_consen 21 SPELKARLERLRAEQEEREYQRMVRNVDPSQ 51 (142)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 6899999999999999999999996654433
No 42
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=23.25 E-value=37 Score=26.17 Aligned_cols=34 Identities=24% Similarity=0.215 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhcccCCCCCchHH
Q 025494 9 FAIGLSLSTAFLVIVVRAFIVRRSRYNRPGSVED 42 (252)
Q Consensus 9 f~~~~cv~~a~l~~~~r~~v~r~~~~~~~GSVaD 42 (252)
.+|.+++++++.+.++..+++.++....++|=++
T Consensus 5 viIaL~~avaa~a~~atwviVq~~~a~~p~s~ee 38 (66)
T PF10907_consen 5 VIIALVVAVAAAAGAATWVIVQPRPAGNPASSEE 38 (66)
T ss_pred hhHHHHHHHHhhhceeEEEEECCCCCCCCCChHH
Confidence 5788888888888888888888886667777554
No 43
>PF03242 LEA_3: Late embryogenesis abundant protein; InterPro: IPR004926 Late-embryogenesis abundant (LEA) genes encode a diverse group of proteins that accumulate to high levels during the maturation phase of seed development []. This group includes LEA-5 [], whose expression is induced by salt, drought and heat stress [], and related proteins. ; GO: 0006950 response to stress
Probab=23.10 E-value=46 Score=26.38 Aligned_cols=13 Identities=46% Similarity=0.567 Sum_probs=12.0
Q ss_pred CCCcceeecCCCC
Q 025494 130 DPDTVRWIPANHP 142 (252)
Q Consensus 130 DPdtVRWIPaNHP 142 (252)
||.|=-|||.||-
T Consensus 67 DPvTGyyrPen~~ 79 (93)
T PF03242_consen 67 DPVTGYYRPENHF 79 (93)
T ss_pred CCCCccccCCCCC
Confidence 8999999999993
No 44
>PF05867 DUF851: Protein of unknown function (DUF851)
Probab=22.61 E-value=34 Score=31.56 Aligned_cols=36 Identities=25% Similarity=0.485 Sum_probs=23.0
Q ss_pred CCCCCcceeecCCCCcccccccccHHHHhcccccccCCccchhh
Q 025494 128 DVDPDTVRWIPANHPFATTANDIDEDLAQNNVYQKQGVPFRIRA 171 (252)
Q Consensus 128 dVDPdtVRWIPaNHPFAtt~s~iDEdlAq~NVyQk~GVP~RikA 171 (252)
-.+-|+.-|.|- -+||- -+--.|||+..||||-..+
T Consensus 92 ~~~eD~Yd~~PK-------L~dV~-Km~~~nvf~~~gvPfWA~~ 127 (242)
T PF05867_consen 92 VPEEDSYDQVPK-------LADVR-KMPEENVFNVDGVPFWAVY 127 (242)
T ss_pred cccccccccccC-------HHHHh-cCCccccccCCCccceeec
Confidence 345577888774 12221 1223899999999997653
No 45
>PRK07946 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=21.98 E-value=91 Score=27.12 Aligned_cols=34 Identities=15% Similarity=0.326 Sum_probs=24.0
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhcccCCCCCchHH
Q 025494 8 SFAIGLSLSTAFLVIVVRAFIVRRSRYNRPGSVED 42 (252)
Q Consensus 8 nf~~~~cv~~a~l~~~~r~~v~r~~~~~~~GSVaD 42 (252)
.++|||++++..|++++|.|-..... +....+.|
T Consensus 80 AIVIg~a~tA~~LaL~~r~y~~~gt~-~v~~d~ed 113 (163)
T PRK07946 80 AIVITMGITAFVLALAYRSYRLTTAD-EVEDDPED 113 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC-ccccCHHH
Confidence 36899999999999998887644333 23555555
No 46
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=21.37 E-value=50 Score=26.75 Aligned_cols=30 Identities=33% Similarity=0.561 Sum_probs=23.2
Q ss_pred CchhhccceeeeeccceecHHHHHHHHhhhhccccccCceeeeccCCCCCCCCCCCcceee
Q 025494 77 NSTMEMCGKVYRLAPITLTKEQQTIHQKRRSRAYQWKRPTIFLKEGDLIPPDVDPDTVRWI 137 (252)
Q Consensus 77 ~stv~m~GK~yRLaPv~LT~eqq~~HQkRRsrAYqWKRPtvFLkEGdsvPpdVDPdtVRWI 137 (252)
.=+.-|.|++|+ +|.++||.|=.+ +|+-+|
T Consensus 72 ~V~SPm~Gtv~~----------------------------~~V~vGd~V~~G---q~l~Ii 101 (140)
T COG0511 72 QVTSPMVGTVYK----------------------------PFVEVGDTVKAG---QTLAII 101 (140)
T ss_pred eEecCcceEEEE----------------------------EeeccCCEEcCC---CEEEEE
Confidence 346679999999 999999998765 455554
No 47
>PRK10722 hypothetical protein; Provisional
Probab=20.34 E-value=2.8e+02 Score=25.88 Aligned_cols=40 Identities=30% Similarity=0.361 Sum_probs=24.0
Q ss_pred CccCCCCCCcceeecCCCchhhccceeeeeccceecHHHHHHHHhhhhccccc
Q 025494 60 LKYEDPFNNPLVKVGKSNSTMEMCGKVYRLAPITLTKEQQTIHQKRRSRAYQW 112 (252)
Q Consensus 60 lkYeDPFNNPlVKi~k~~stv~m~GK~yRLaPv~LT~eqq~~HQkRRsrAYqW 112 (252)
+..++--||||.- ..|.+-.=||.| .++.-+.+|.-+.-|
T Consensus 66 ~~~~~a~~N~LYW-------lR~mdcAdRL~~------~ear~ea~~~~~~~w 105 (247)
T PRK10722 66 LQGKAAENNPLYW-------LRAMDCADRLMP------AQARAQAKRLPDDSW 105 (247)
T ss_pred ccCcchhcchHHH-------HHHHHHHHhcCH------HHHHHHHHhcCCCCH
Confidence 3445556888863 344444556766 455556666667777
No 48
>PF03870 RNA_pol_Rpb8: RNA polymerase Rpb8; InterPro: IPR005570 Rpb8 is a subunit common to the three yeast RNA polymerases, pol I, II and III. Rpb8 interacts with the largest subunit Rpb1, and with Rpb3 and Rpb11, two smaller subunits.; GO: 0006351 transcription, DNA-dependent; PDB: 1TWH_H 1R9T_H 1I3Q_H 2B8K_H 1TWA_H 2NVY_H 4A3E_H 1Y77_H 3GTK_H 2E2J_H ....
Probab=20.19 E-value=47 Score=27.96 Aligned_cols=10 Identities=50% Similarity=0.919 Sum_probs=8.8
Q ss_pred hccceeeeec
Q 025494 81 EMCGKVYRLA 90 (252)
Q Consensus 81 ~m~GK~yRLa 90 (252)
-|+||+||+-
T Consensus 85 VMyGkvYk~e 94 (138)
T PF03870_consen 85 VMYGKVYKFE 94 (138)
T ss_dssp EEEEEEEEEE
T ss_pred EeeeEEEeee
Confidence 4999999986
No 49
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=20.05 E-value=1.1e+02 Score=21.14 Aligned_cols=46 Identities=26% Similarity=0.432 Sum_probs=28.0
Q ss_pred chhhhHHHHHHHHHHhhhH-----hhhhhccCCCcchhhhhh-hhhcCCCCCC
Q 025494 168 RIRAEHEALQKKLEALQNE-----QKLNKLVIDSSNAKDFER-AFKLNPKSEE 214 (252)
Q Consensus 168 RikAEHEALq~klea~~ne-----qklnkl~~d~~n~k~~eR-~~~~~~~~~e 214 (252)
.+++|..+|+++++.++.| +++.+|..||....+.-| -+... +++|
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm~-~~~E 72 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGMV-KPGE 72 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCc-CCCC
Confidence 3566777777777776654 345666457777777666 44444 3443
No 50
>KOG2446 consensus Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=20.02 E-value=86 Score=31.96 Aligned_cols=110 Identities=23% Similarity=0.306 Sum_probs=77.2
Q ss_pred ceeecCCCchhhccceeeeeccceecHHHHHHHHhhhhcccccc-CceeeeccCCCC-----CCCCCCCcceeecCCCCc
Q 025494 70 LVKVGKSNSTMEMCGKVYRLAPITLTKEQQTIHQKRRSRAYQWK-RPTIFLKEGDLI-----PPDVDPDTVRWIPANHPF 143 (252)
Q Consensus 70 lVKi~k~~stv~m~GK~yRLaPv~LT~eqq~~HQkRRsrAYqWK-RPtvFLkEGdsv-----PpdVDPdtVRWIPaNHPF 143 (252)
.|-||-+.|- |-|+-.|+.-+ -|.=. .-+-|+.-=|+. =..+||+|--.|=+---|
T Consensus 153 VvnIGIGGSd---------LGP~mVteALk---------~y~~~gl~~~FvsNiD~t~ia~~~~kl~pEttLfiVaSKTf 214 (546)
T KOG2446|consen 153 VVNIGIGGSD---------LGPLMVTEALK---------PYGPGGLEVHFVSNIDGTHIAEVLKKLNPETTLFIVASKTF 214 (546)
T ss_pred EEEecccccc---------cchHHHHHhhc---------cCCCCCceEEEEecCCchhHHHHHhccCccceEEEEEecCc
Confidence 4667777764 45655555322 22221 234466555542 246899999999999999
Q ss_pred ccccccccHHHHhcccccccCCccchhhhHHHHHHHHHHhhhHhhhhhccCCCcchhhhh
Q 025494 144 ATTANDIDEDLAQNNVYQKQGVPFRIRAEHEALQKKLEALQNEQKLNKLVIDSSNAKDFE 203 (252)
Q Consensus 144 Att~s~iDEdlAq~NVyQk~GVP~RikAEHEALq~klea~~neqklnkl~~d~~n~k~~e 203 (252)
.|.-+--.-++|+.=.-++-.-|+-|- -|+. .-+-|++|+.++-|||.||=.|.
T Consensus 215 tT~ETitnaetak~w~~a~~~d~s~VA-khfv-----AlstN~~~v~~fgid~~nmF~fw 268 (546)
T KOG2446|consen 215 TTAETITNAETAKEWFLAKAKDPSAVA-KHFV-----ALSTNTAEVEKFGIDPKNMFEFW 268 (546)
T ss_pred CcHHHHhhHHHHHHHHHhhcCChHHHH-HHHH-----HHhccHHHHHHhCCCcccccchh
Confidence 998888888999988888866777664 4432 23679999999999999997765
Done!