Query 025494
Match_columns 252
No_of_seqs 16 out of 18
Neff 1.8
Searched_HMMs 29240
Date Mon Mar 25 11:27:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025494.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025494hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dgw_Y Canavalin; duplicated s 74.7 0.89 3E-05 34.4 0.9 17 133-149 14-30 (93)
2 3rdy_A BWI-1=protease inhibito 55.5 6.6 0.00023 29.1 2.3 20 116-135 44-63 (79)
3 1mit_A RCMTI-V, trypsin inhibi 51.7 8.7 0.0003 27.1 2.3 46 77-135 8-53 (69)
4 1cq4_A Protein (serine protein 50.3 6.4 0.00022 26.3 1.4 18 116-133 29-46 (47)
5 1vbw_A Trypsin inhibitor BGIT; 47.6 11 0.00038 26.5 2.3 47 77-136 7-53 (68)
6 2ci2_I Chymotrypsin inhibitor 42.1 15 0.00051 26.9 2.4 48 76-136 21-68 (83)
7 2okm_A Collagen adhesin; colla 40.1 7.7 0.00026 32.2 0.6 21 114-137 3-23 (147)
8 1dwm_A LUTI, linum usitatissin 36.7 21 0.00072 25.0 2.4 21 116-136 35-55 (70)
9 3s8f_B Cytochrome C oxidase su 36.6 77 0.0026 25.6 6.0 28 63-90 61-91 (168)
10 2ks1_B Epidermal growth factor 35.3 43 0.0015 22.5 3.7 28 8-35 12-41 (44)
11 1to2_I Chymotrypsin inhibitor 35.2 11 0.00036 26.3 0.6 22 115-136 28-49 (64)
12 1cse_I Eglin C; complex(serine 35.1 15 0.00051 26.0 1.4 47 77-136 8-54 (70)
13 2k9y_A Ephrin type-A receptor 30.9 47 0.0016 20.6 3.1 12 10-21 16-27 (41)
14 2xze_Q Charged multivesicular 30.7 25 0.00085 23.7 1.8 14 172-185 27-40 (40)
15 2l2t_A Receptor tyrosine-prote 28.7 73 0.0025 21.5 3.9 27 9-35 12-40 (44)
16 3azd_A Short alpha-tropomyosin 28.6 25 0.00087 22.6 1.6 16 171-186 4-19 (37)
17 2xyy_A Coat protein, P22; viru 26.6 19 0.00066 34.1 1.0 59 132-191 45-121 (430)
18 3o2t_A Symplekin; heat repeat, 23.3 31 0.0011 31.4 1.7 12 133-144 203-214 (386)
19 2zd1_B P51 RT; P51/P66, hetero 22.6 40 0.0014 29.7 2.2 37 40-84 38-75 (428)
20 2jwa_A Receptor tyrosine-prote 22.5 91 0.0031 21.1 3.5 9 26-34 32-40 (44)
21 2yy0_A C-MYC-binding protein; 21.6 58 0.002 22.3 2.4 16 170-185 25-40 (53)
22 3p0s_A Capsid protein VP; icos 21.5 41 0.0014 32.0 2.1 54 48-101 396-464 (494)
23 1r6n_A HPV11 E2 TAD, HPV11 reg 21.1 23 0.0008 30.6 0.4 29 172-201 6-34 (211)
24 3gs3_A Symplekin, LD45768P; he 20.8 26 0.00088 29.9 0.6 13 133-145 190-202 (257)
No 1
>1dgw_Y Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_Y
Probab=74.66 E-value=0.89 Score=34.37 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=14.4
Q ss_pred cceeecCCCCccccccc
Q 025494 133 TVRWIPANHPFATTAND 149 (252)
Q Consensus 133 tVRWIPaNHPFAtt~s~ 149 (252)
.|=|||+||||+..|+.
T Consensus 14 ~v~vVPq~~~v~~~A~~ 30 (93)
T 1dgw_Y 14 DIIVIPSSFPVALKAAS 30 (93)
T ss_dssp CEEEECTTCCEEEEESS
T ss_pred cEEEECCCCceeEEecC
Confidence 47799999999988774
No 2
>3rdy_A BWI-1=protease inhibitor/trypsin inhibitor; serine protease inhibitor, potato inhibitor I, trypsin inhib trypsin, hydrolase inhibitor; 1.84A {Fagopyrum esculentum} SCOP: d.40.1.0 PDB: 3rdz_C
Probab=55.54 E-value=6.6 Score=29.09 Aligned_cols=20 Identities=40% Similarity=0.614 Sum_probs=18.7
Q ss_pred eeeeccCCCCCCCCCCCcce
Q 025494 116 TIFLKEGDLIPPDVDPDTVR 135 (252)
Q Consensus 116 tvFLkEGdsvPpdVDPdtVR 135 (252)
+++|.+|+.++.|.+||-||
T Consensus 44 v~Vl~~Gs~VT~Dfr~~RVr 63 (79)
T 3rdy_A 44 AIVLPEGSAVPRDLRCDRVW 63 (79)
T ss_dssp EEEEETTCCCCSCCCSSEEE
T ss_pred eEEeCCCCccCCccCCCEEE
Confidence 57899999999999999998
No 3
>1mit_A RCMTI-V, trypsin inhibitor V; serine protease inhibitor (RCMTI-V); NMR {Cucurbita maxima} SCOP: d.40.1.1 PDB: 1tin_A
Probab=51.68 E-value=8.7 Score=27.11 Aligned_cols=46 Identities=22% Similarity=0.304 Sum_probs=30.5
Q ss_pred CchhhccceeeeeccceecHHHHHHHHhhhhccccccCceeeeccCCCCCCCCCCCcce
Q 025494 77 NSTMEMCGKVYRLAPITLTKEQQTIHQKRRSRAYQWKRPTIFLKEGDLIPPDVDPDTVR 135 (252)
Q Consensus 77 ~stv~m~GK~yRLaPv~LT~eqq~~HQkRRsrAYqWKRPtvFLkEGdsvPpdVDPdtVR 135 (252)
+|--|+-|+-...| ...|.+.|-. + -..+|.+|+.++.|.+||-||
T Consensus 8 ~sWpELVG~~~~~A-------~~~I~~d~p~-v-----~v~vl~~g~~vT~Dfr~~RV~ 53 (69)
T 1mit_A 8 SSWPHLVGVGGSVA-------KAIIERQNPN-V-----KAVILEEGTPVTKDFRCNRVR 53 (69)
T ss_dssp SCCCCCTTSHHHHH-------HHHHHHHCTT-S-----EEEEEETTCCCCSSCCTTEEE
T ss_pred CcCHHHcCccHHHH-------HHHHHHHCCC-C-----eEEEecCCCccCCCcCCCEEE
Confidence 45557777644332 3334433321 1 368999999999999999987
No 4
>1cq4_A Protein (serine proteinase inhibitor 2); serine protease inhibitor, polyglutamine insertion mutant, subtilisin- chymotrypsin inhibitor-2; 1.80A {Hordeum vulgare} SCOP: d.40.1.1
Probab=50.35 E-value=6.4 Score=26.27 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=9.1
Q ss_pred eeeeccCCCCCCCCCCCc
Q 025494 116 TIFLKEGDLIPPDVDPDT 133 (252)
Q Consensus 116 tvFLkEGdsvPpdVDPdt 133 (252)
+++|.+|++++.|.++|-
T Consensus 29 v~vl~~gs~vT~Df~~~R 46 (47)
T 1cq4_A 29 IIVLPVGTIVTMGQQQQG 46 (47)
T ss_dssp EEEEETTCCC--------
T ss_pred EEEeCCCCCcCcccCCCC
Confidence 579999999999999874
No 5
>1vbw_A Trypsin inhibitor BGIT; BGTI, protein binding; HET: TLA; 0.93A {Momordica charantia}
Probab=47.59 E-value=11 Score=26.50 Aligned_cols=47 Identities=21% Similarity=0.239 Sum_probs=32.0
Q ss_pred CchhhccceeeeeccceecHHHHHHHHhhhhccccccCceeeeccCCCCCCCCCCCccee
Q 025494 77 NSTMEMCGKVYRLAPITLTKEQQTIHQKRRSRAYQWKRPTIFLKEGDLIPPDVDPDTVRW 136 (252)
Q Consensus 77 ~stv~m~GK~yRLaPv~LT~eqq~~HQkRRsrAYqWKRPtvFLkEGdsvPpdVDPdtVRW 136 (252)
+|--|+-|+-...| ...|.+.|-. + -..+|.+|+.++.|.++|-||=
T Consensus 7 ~sWpELVG~~~~~A-------~~~I~~d~p~-~-----~v~vl~~g~~vT~Df~~~RV~v 53 (68)
T 1vbw_A 7 SSWPQLVGSTGAAA-------KAVIERENPR-V-----RAVIIKVGSGATKDFRCDRVRV 53 (68)
T ss_dssp CBCGGGTTSBHHHH-------HHHHHHHCTT-C-----EEEEEETTSCCCCSCCTTEEEE
T ss_pred CcCHHHCCcCHHHH-------HHHHHHHCCC-C-----eEEEecCCCccCCCcCCCEEEE
Confidence 56668888754333 3444443322 1 4689999999999999999973
No 6
>2ci2_I Chymotrypsin inhibitor 2; proteinase inhibitor (chymotrypsin); 2.00A {Hordeum vulgare} SCOP: d.40.1.1 PDB: 2sni_I
Probab=42.10 E-value=15 Score=26.93 Aligned_cols=48 Identities=25% Similarity=0.295 Sum_probs=32.3
Q ss_pred CCchhhccceeeeeccceecHHHHHHHHhhhhccccccCceeeeccCCCCCCCCCCCccee
Q 025494 76 SNSTMEMCGKVYRLAPITLTKEQQTIHQKRRSRAYQWKRPTIFLKEGDLIPPDVDPDTVRW 136 (252)
Q Consensus 76 ~~stv~m~GK~yRLaPv~LT~eqq~~HQkRRsrAYqWKRPtvFLkEGdsvPpdVDPdtVRW 136 (252)
.+|--|+-|+-...|. ..|.+.|-. --..+|.+|+.++.|.++|-||=
T Consensus 21 K~sWPELVG~~~~~A~-------~~I~~d~p~------v~vrVl~~G~~VT~Dfr~dRV~V 68 (83)
T 2ci2_I 21 KTEWPELVGKSVEEAK-------KVILQDKPE------AQIIVLPVGTIVTMEYRIDRVRL 68 (83)
T ss_dssp CCBCGGGTTSBHHHHH-------HHHHHHCTT------CEEEEEETTCCCCSCCCTTEEEE
T ss_pred hhhhHHHcCCcHHHHH-------HHHHhhCCC------CeEEEecCCCccCCCcCCCEEEE
Confidence 3556677777544433 344443322 14689999999999999999973
No 7
>2okm_A Collagen adhesin; collagen-binding, cell adhesion; 1.65A {Enterococcus faecalis}
Probab=40.12 E-value=7.7 Score=32.16 Aligned_cols=21 Identities=38% Similarity=0.754 Sum_probs=17.6
Q ss_pred CceeeeccCCCCCCCCCCCcceee
Q 025494 114 RPTIFLKEGDLIPPDVDPDTVRWI 137 (252)
Q Consensus 114 RPtvFLkEGdsvPpdVDPdtVRWI 137 (252)
.|..|.|-||-.| |++.|||.
T Consensus 3 ~~~FyyKtGdm~~---d~~~VRWf 23 (147)
T 2okm_A 3 DYPFFYKVGDLAG---ESNQVRWF 23 (147)
T ss_dssp CCCSEEEEEECCS---STTEEEEE
T ss_pred CcccEEeccCCCC---CCCeEEEE
Confidence 4668999999974 77999995
No 8
>1dwm_A LUTI, linum usitatissinum trypsin inhibitor; serine proteinase inhibitor; NMR {Linum usitatissimum} SCOP: d.40.1.1
Probab=36.71 E-value=21 Score=24.95 Aligned_cols=21 Identities=38% Similarity=0.453 Sum_probs=19.2
Q ss_pred eeeeccCCCCCCCCCCCccee
Q 025494 116 TIFLKEGDLIPPDVDPDTVRW 136 (252)
Q Consensus 116 tvFLkEGdsvPpdVDPdtVRW 136 (252)
..+|.+|+.++.|.+||-|+=
T Consensus 35 vrvl~pg~~vT~Dfr~~RV~v 55 (70)
T 1dwm_A 35 AIVLKEGSAMTKDFRCDRVWV 55 (70)
T ss_dssp EEEEETTCCCCCSCCTTEEEE
T ss_pred EEEecCCCccCCccCCCeEEE
Confidence 678999999999999999873
No 9
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=36.57 E-value=77 Score=25.64 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=17.5
Q ss_pred CCCCCCcc--ee-ecCCCchhhccceeeeec
Q 025494 63 EDPFNNPL--VK-VGKSNSTMEMCGKVYRLA 90 (252)
Q Consensus 63 eDPFNNPl--VK-i~k~~stv~m~GK~yRLa 90 (252)
.-||.+|= ++ +....-+|.|-+.-|+..
T Consensus 61 ~~~f~~pg~a~~~~~~~~v~V~m~a~~~~f~ 91 (168)
T 3s8f_B 61 EGPWADPAQAVVQTGPNQYTVYVLAFAFGYQ 91 (168)
T ss_dssp SSTTSCGGGCEEEEETTEEEEEEEEETTEEE
T ss_pred ccccCCCCcccccCCCCeEEEEEEEEeceEe
Confidence 44999997 53 455566666666544444
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=35.25 E-value=43 Score=22.49 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=14.0
Q ss_pred chhHHHHHHHHHHHHH--HHHhhhhcccCC
Q 025494 8 SFAIGLSLSTAFLVIV--VRAFIVRRSRYN 35 (252)
Q Consensus 8 nf~~~~cv~~a~l~~~--~r~~v~r~~~~~ 35 (252)
.+++|+..+++++++. +-.|.+|+++..
T Consensus 12 ~IA~gVVgGv~~~~ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 12 SIATGMVGALLLLLVVALGIGLFMRRRHIV 41 (44)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred eEEeehhHHHHHHHHHHHHHHHHhhhhHhh
Confidence 3677765555554333 333455555443
No 11
>1to2_I Chymotrypsin inhibitor 2; serine protease, hydrolase; HET: CIT 15P; 1.30A {Hordeum vulgare subsp} SCOP: d.40.1.1 PDB: 1tm3_I* 1tm5_I* 1tm1_I* 1tm7_I* 1tm4_I* 1y4a_I* 1y4d_I 1tmg_I* 1lw6_I 1y3b_I* 1y1k_I* 1y34_I* 1y48_I* 1y3d_I* 1y3c_I* 1y33_I* 1to1_I* 1y3f_I* 3ci2_A 1coa_I ...
Probab=35.17 E-value=11 Score=26.29 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.5
Q ss_pred ceeeeccCCCCCCCCCCCccee
Q 025494 115 PTIFLKEGDLIPPDVDPDTVRW 136 (252)
Q Consensus 115 PtvFLkEGdsvPpdVDPdtVRW 136 (252)
-..+|.+|+.++.|.+|+-||=
T Consensus 28 ~v~vl~~g~~vT~Df~~~RV~v 49 (64)
T 1to2_I 28 QIIVLPVGTIVTKEYRIDRVRL 49 (64)
T ss_dssp EEEEEETTCEEECBCCTTEEEE
T ss_pred eEEEecCCCccCCCcCCCEEEE
Confidence 3579999999999999999973
No 12
>1cse_I Eglin C; complex(serine proteinase-inhibitor); 1.20A {Hirudo medicinalis} SCOP: d.40.1.1 PDB: 2sec_I 2tec_I 1egl_A 1tec_I 1acb_I 3tec_I 1sib_I 1sbn_I 1mee_I 1egp_A 1egp_B
Probab=35.09 E-value=15 Score=26.00 Aligned_cols=47 Identities=26% Similarity=0.288 Sum_probs=30.7
Q ss_pred CchhhccceeeeeccceecHHHHHHHHhhhhccccccCceeeeccCCCCCCCCCCCccee
Q 025494 77 NSTMEMCGKVYRLAPITLTKEQQTIHQKRRSRAYQWKRPTIFLKEGDLIPPDVDPDTVRW 136 (252)
Q Consensus 77 ~stv~m~GK~yRLaPv~LT~eqq~~HQkRRsrAYqWKRPtvFLkEGdsvPpdVDPdtVRW 136 (252)
+|--|+.|+-.-.| ...|.+-| .-+ -..+|.+|+.++.|.++|-||=
T Consensus 8 ~sWPELVG~~~~~A-------~~~I~~d~-p~~-----~v~vl~~g~~vT~Df~~~RV~V 54 (70)
T 1cse_I 8 KSFPEVVGKTVDQA-------REYFTLHY-PQY-----NVYFLPEGSPVTLDLRYNRVRV 54 (70)
T ss_dssp CBCGGGTTSBHHHH-------HHHHHHHC-TTS-----EEEEEETTCCEECCCCTTEEEE
T ss_pred CcCHHHcCccHHHH-------HHHHHHHC-CCC-----eEEEecCCCccCCccCCCeEEE
Confidence 45567777754333 23333332 222 3689999999999999999983
No 13
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=30.91 E-value=47 Score=20.63 Aligned_cols=12 Identities=17% Similarity=0.398 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHH
Q 025494 10 AIGLSLSTAFLV 21 (252)
Q Consensus 10 ~~~~cv~~a~l~ 21 (252)
++++.+++++|+
T Consensus 16 ~~~vv~Gv~ll~ 27 (41)
T 2k9y_A 16 IGGVAVGVVLLL 27 (41)
T ss_dssp HHHHHHHHHHHH
T ss_pred EeehhHHHHHHH
Confidence 444556666655
No 14
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=30.72 E-value=25 Score=23.67 Aligned_cols=14 Identities=36% Similarity=0.558 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHhhh
Q 025494 172 EHEALQKKLEALQN 185 (252)
Q Consensus 172 EHEALq~klea~~n 185 (252)
+.+++|.||.||.+
T Consensus 27 di~~MqsRLaALRS 40 (40)
T 2xze_Q 27 ALEAMQSRLATLRS 40 (40)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcC
Confidence 46899999999864
No 15
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=28.70 E-value=73 Score=21.50 Aligned_cols=27 Identities=37% Similarity=0.357 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHH--HHHhhhhcccCC
Q 025494 9 FAIGLSLSTAFLVIV--VRAFIVRRSRYN 35 (252)
Q Consensus 9 f~~~~cv~~a~l~~~--~r~~v~r~~~~~ 35 (252)
+++|+..+++++++. +=.+..|+++..
T Consensus 12 IA~gVVgGv~~v~ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred EEEeehHHHHHHHHHHHHHHHHhhhhhhh
Confidence 455554444443333 333444544443
No 16
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=28.64 E-value=25 Score=22.62 Aligned_cols=16 Identities=31% Similarity=0.588 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHhhhH
Q 025494 171 AEHEALQKKLEALQNE 186 (252)
Q Consensus 171 AEHEALq~klea~~ne 186 (252)
++.+||++||..++++
T Consensus 4 ~~i~avKkKiq~lq~q 19 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQ 19 (37)
T ss_dssp --CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4678999999999874
No 17
>2xyy_A Coat protein, P22; virus, icosahedral reconstruction; 3.80A {Enterobacteria phage P22} PDB: 2xyz_A 3iyh_A 3iyi_A
Probab=26.62 E-value=19 Score=34.06 Aligned_cols=59 Identities=24% Similarity=0.365 Sum_probs=42.7
Q ss_pred CcceeecCC---C-----CcccccccccHHHHhcccccccCCccchhhhHH--------HHHHHHHHhhh--Hhhhhh
Q 025494 132 DTVRWIPAN---H-----PFATTANDIDEDLAQNNVYQKQGVPFRIRAEHE--------ALQKKLEALQN--EQKLNK 191 (252)
Q Consensus 132 dtVRWIPaN---H-----PFAtt~s~iDEdlAq~NVyQk~GVP~RikAEHE--------ALq~klea~~n--eqklnk 191 (252)
||| |||+- + +|++.+++|+|...--++=+-+-|||++.||-- .||.-|.+|-| |.+|-+
T Consensus 45 dtv-~~Pv~~~~~~~dg~~~t~~~~~~~e~~V~~~~~~~~~v~~~~~akel~d~~~~~~~~~~A~~~Lan~Ve~dL~~ 121 (430)
T 2xyy_A 45 NTI-WMPVEQESPTQEGWDLTDKATGLLELNVAVNMGEPDNDFFQLRADDLRDETAYRRRIQSAARKLANNVELKVAN 121 (430)
T ss_pred CeE-EeccCccccccccCcccCCCCccccceeeEEecCcccccEEechhHhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566 89863 3 899999999998888888888899999999842 23444555444 455555
No 18
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=23.30 E-value=31 Score=31.37 Aligned_cols=12 Identities=33% Similarity=0.902 Sum_probs=10.0
Q ss_pred cceeecCCCCcc
Q 025494 133 TVRWIPANHPFA 144 (252)
Q Consensus 133 tVRWIPaNHPFA 144 (252)
.+-|||.||||-
T Consensus 203 SL~~VP~nHp~L 214 (386)
T 3o2t_A 203 SLDRIPRDHPYI 214 (386)
T ss_dssp CGGGSCTTCSSS
T ss_pred CHhhCCCCCCcC
Confidence 356999999996
No 19
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=22.61 E-value=40 Score=29.74 Aligned_cols=37 Identities=22% Similarity=0.475 Sum_probs=26.8
Q ss_pred hHHHHHhcccccCCcCCCCCCccCCCCCCcceeecCCCch-hhccc
Q 025494 40 VEDLVRRGQLRSDRRGISRPLKYEDPFNNPLVKVGKSNST-MEMCG 84 (252)
Q Consensus 40 VaDLvRRGQLrSdrRgis~plkYeDPFNNPlVKi~k~~st-v~m~G 84 (252)
|.+|+..|-++ +...+.|+++|.+-|.|.+++ .+||-
T Consensus 38 i~~ll~~G~I~--------~v~s~s~~~sPv~~V~Kk~g~k~R~~v 75 (428)
T 2zd1_B 38 CTEMEKEGKIS--------KIGPENPYNTPVFAIKKKDSTKWRKLV 75 (428)
T ss_dssp HHHHHHTTSEE--------ECCTTCCCBBCEEEECCTTCSSCEEEE
T ss_pred HHHHHHCCCce--------ECCCCCCccCceeeccCCCCCceEEEE
Confidence 56677776665 222347999999999998874 78874
No 20
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=22.48 E-value=91 Score=21.11 Aligned_cols=9 Identities=11% Similarity=0.534 Sum_probs=3.8
Q ss_pred HhhhhcccC
Q 025494 26 AFIVRRSRY 34 (252)
Q Consensus 26 ~~v~r~~~~ 34 (252)
.+.+|+|+.
T Consensus 32 ~~~~RRR~~ 40 (44)
T 2jwa_A 32 GILIKRRQQ 40 (44)
T ss_dssp HHHHHHHCS
T ss_pred Hhheehhhh
Confidence 344444443
No 21
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=21.59 E-value=58 Score=22.25 Aligned_cols=16 Identities=31% Similarity=0.461 Sum_probs=8.0
Q ss_pred hhhHHHHHHHHHHhhh
Q 025494 170 RAEHEALQKKLEALQN 185 (252)
Q Consensus 170 kAEHEALq~klea~~n 185 (252)
++|.+.||.|.++|+.
T Consensus 25 k~E~~eLk~k~~~L~~ 40 (53)
T 2yy0_A 25 RLELAEMKEKYEAIVE 40 (53)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555443
No 22
>3p0s_A Capsid protein VP; icosahedral virus capsid, virus-like particle, capsid protei barrel; 3.10A {Bombyx mori densovirus 1}
Probab=21.54 E-value=41 Score=31.99 Aligned_cols=54 Identities=20% Similarity=0.239 Sum_probs=27.7
Q ss_pred ccccCCcCCCC--------------CCccCCCCCCcceeecCC-CchhhccceeeeeccceecHHHHHH
Q 025494 48 QLRSDRRGISR--------------PLKYEDPFNNPLVKVGKS-NSTMEMCGKVYRLAPITLTKEQQTI 101 (252)
Q Consensus 48 QLrSdrRgis~--------------plkYeDPFNNPlVKi~k~-~stv~m~GK~yRLaPv~LT~eqq~~ 101 (252)
-|.|-|++|++ -.+|+|||+-||+....- +--..--|-.-|++|=+-.+|+++.
T Consensus 396 glqstrew~~rtdtiPpq~ftsqy~qfr~~~~~~~pl~~~~~~~~~pt~rpgM~s~~~~~r~~~~~~~~ 464 (494)
T 3p0s_A 396 GLQSTREWVARTDRIPPQYFTSQYTQFRYPNINETPLLRSLGTFKLPTKRPGMDSRIAAGRAAETTQDE 464 (494)
T ss_dssp EEECCSSCCCSSSSCCCCCSSCCCEEEECSSTTSCCCEECTTCCEETTTEECEECCSBC----------
T ss_pred eccccccceeecCccCchhhcccccccccCCcccCcccccccccccCCCCccccccCCCCccchhhhHH
Confidence 45677777777 257999999999954210 0011223556688998887777653
No 23
>1r6n_A HPV11 E2 TAD, HPV11 regulatory protein E2, E2 protein; , transcription, replication, transcription, replication; HET: 434; 2.40A {Human papillomavirus type 11} SCOP: b.91.1.1 PDB: 1r6k_A
Probab=21.11 E-value=23 Score=30.59 Aligned_cols=29 Identities=34% Similarity=0.430 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHhhhHhhhhhccCCCcchhh
Q 025494 172 EHEALQKKLEALQNEQKLNKLVIDSSNAKD 201 (252)
Q Consensus 172 EHEALq~klea~~neqklnkl~~d~~n~k~ 201 (252)
-||||..||.|+|+ +-|+-.--|+...++
T Consensus 6 ~~~~L~~RldalQe-~ll~lyE~dS~~L~d 34 (211)
T 1r6n_A 6 HHEAIAKRLDACQD-QLLELYEENSIDIHK 34 (211)
T ss_dssp -CCTHHHHHHHHHH-HHHHHHHHCCCCHHH
T ss_pred hHHHHHHHHHHHHH-HHHHHHhcCCccHHH
Confidence 58999999999997 446666666665544
No 24
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=20.79 E-value=26 Score=29.92 Aligned_cols=13 Identities=8% Similarity=0.192 Sum_probs=10.7
Q ss_pred cceeecCCCCccc
Q 025494 133 TVRWIPANHPFAT 145 (252)
Q Consensus 133 tVRWIPaNHPFAt 145 (252)
.+-|||.||||--
T Consensus 190 SL~~Vp~~Hp~l~ 202 (257)
T 3gs3_A 190 SLADVPDHCTLFR 202 (257)
T ss_dssp CGGGSCSSCCSSC
T ss_pred CHHHCCCCCCcCC
Confidence 4669999999974
Done!