Query 025494
Match_columns 252
No_of_seqs 16 out of 18
Neff 1.8
Searched_HMMs 13730
Date Mon Mar 25 11:28:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025494.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025494hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gpja2 c.2.1.7 (A:144-302) Gl 60.8 3.6 0.00026 30.1 3.6 34 94-133 99-132 (159)
2 d2epra1 g.37.1.1 (A:350-384) P 59.6 1.2 8.6E-05 28.1 0.6 12 77-88 5-16 (35)
3 d1hzta_ d.113.1.2 (A:) Isopent 46.3 3.5 0.00026 29.6 1.4 47 128-185 100-150 (153)
4 d1ax8a_ a.26.1.1 (A:) Leptin ( 40.0 8.4 0.00061 30.0 2.8 46 136-185 39-90 (144)
5 g1hym.1 d.40.1.1 (A:,B:) Tryps 36.3 10 0.00073 25.9 2.4 23 115-137 32-55 (68)
6 d1dwma_ d.40.1.1 (A:) Trypsin 32.8 12 0.00089 25.6 2.4 23 116-138 34-57 (69)
7 d1csei_ d.40.1.1 (I:) Eglin C 31.5 8.7 0.00063 25.8 1.4 22 116-137 27-49 (63)
8 d1wiba_ d.47.1.1 (A:) 60S ribo 28.0 14 0.001 26.5 2.1 36 121-156 3-40 (92)
9 d2zd1b1 e.8.1.2 (B:5-428) HIV- 25.7 15 0.0011 31.5 2.2 38 40-85 34-72 (424)
10 d1ztwa1 e.8.1.2 (A:24-278) MML 24.6 17 0.0012 28.1 2.2 35 40-84 55-90 (255)
11 d2p0ma1 a.119.1.2 (A:113-663) 24.6 15 0.0011 32.6 2.1 45 94-144 12-56 (551)
12 d2omzb1 b.1.6.1 (B:-2-101) E-c 23.7 11 0.00083 25.0 0.9 18 109-126 2-19 (104)
13 d1pcsa_ b.6.1.1 (A:) Plastocya 22.3 24 0.0017 23.3 2.3 22 109-139 13-34 (98)
14 d1mu2a2 e.8.1.2 (A:3-429) HIV- 20.9 20 0.0015 30.6 2.1 37 40-84 36-73 (427)
15 d1to2i_ d.40.1.1 (I:) Chymotry 20.7 13 0.00095 25.0 0.6 22 116-137 29-51 (64)
No 1
>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=60.78 E-value=3.6 Score=30.13 Aligned_cols=34 Identities=15% Similarity=0.348 Sum_probs=26.7
Q ss_pred ecHHHHHHHHhhhhccccccCceeeeccCCCCCCCCCCCc
Q 025494 94 LTKEQQTIHQKRRSRAYQWKRPTIFLKEGDLIPPDVDPDT 133 (252)
Q Consensus 94 LT~eqq~~HQkRRsrAYqWKRPtvFLkEGdsvPpdVDPdt 133 (252)
+|+|.-....++|. +++|.+|+--| +|.||||+.
T Consensus 99 i~~~~i~~~~~~r~----~~~~~~iiDla--vPr~vd~~v 132 (159)
T d1gpja2 99 IHVDDVREALRKRD----RRSPILIIDIA--NPRDVEEGV 132 (159)
T ss_dssp BCHHHHHHHHHHCS----SCCCEEEEECC--SSCSBCTTG
T ss_pred ccHhhhHHHHHhcc----cCCCeEEEeec--CCCCcChhh
Confidence 78887766666663 57999999875 999999873
No 2
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.55 E-value=1.2 Score=28.12 Aligned_cols=12 Identities=42% Similarity=1.101 Sum_probs=9.6
Q ss_pred Cchhhccceeee
Q 025494 77 NSTMEMCGKVYR 88 (252)
Q Consensus 77 ~stv~m~GK~yR 88 (252)
+-.-+||||.||
T Consensus 5 ~~~ce~cgk~fr 16 (35)
T d2epra1 5 QVACEICGKIFR 16 (35)
T ss_dssp SEEETTTTEEES
T ss_pred hhhHHHHHHHHH
Confidence 345689999998
No 3
>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}
Probab=46.32 E-value=3.5 Score=29.55 Aligned_cols=47 Identities=17% Similarity=0.367 Sum_probs=30.8
Q ss_pred CCCCC---cceeecCCCCcccccccccHHHHhcccccccCCc-cchhhhHHHHHHHHHHhhh
Q 025494 128 DVDPD---TVRWIPANHPFATTANDIDEDLAQNNVYQKQGVP-FRIRAEHEALQKKLEALQN 185 (252)
Q Consensus 128 dVDPd---tVRWIPaNHPFAtt~s~iDEdlAq~NVyQk~GVP-~RikAEHEALq~klea~~n 185 (252)
..||+ .++|++. ++|.++++.+- ++- .| |++.++|.+++++|.+.-.
T Consensus 100 ~~~~~Ev~~~~W~~~--------~el~~~i~~~p--~~~-tpW~~~~~~~~~~~~~l~~~~~ 150 (153)
T d1hzta_ 100 QINDDEVMDYQWCDL--------ADVLHGIDATP--WAF-SPWMVMQATNREARKRLSAFTQ 150 (153)
T ss_dssp CCCTTTEEEEEEECH--------HHHHHHHHHCG--GGB-CHHHHHHHHSHHHHHHHHHTTS
T ss_pred cCChhheeEEEEeeH--------HHHHHHHHcCC--ccc-CHHHHHHHhhHHHHHHHHHHHh
Confidence 34555 6799974 45555554431 111 35 8999999999999987643
No 4
>d1ax8a_ a.26.1.1 (A:) Leptin (obesity protein) {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.04 E-value=8.4 Score=30.02 Aligned_cols=46 Identities=39% Similarity=0.637 Sum_probs=34.9
Q ss_pred eecCCCCcccccccccHHHHhcccccc--cCCccc----hhhhHHHHHHHHHHhhh
Q 025494 136 WIPANHPFATTANDIDEDLAQNNVYQK--QGVPFR----IRAEHEALQKKLEALQN 185 (252)
Q Consensus 136 WIPaNHPFAtt~s~iDEdlAq~NVyQk--~GVP~R----ikAEHEALq~klea~~n 185 (252)
.||++||+-+-+ .||+-|| +||+ +-.|++ |....|-|+..|+.+-.
T Consensus 39 fiP~~~pi~sLs-smdqTL~---~yQ~iL~sLp~~~v~QI~nDlenLr~lL~~lat 90 (144)
T d1ax8a_ 39 FIPGLHPILTLS-KMDQTLA---VYQQILTSMPSRNVIQISNDLENLRDLLHVLAF 90 (144)
T ss_dssp SCCCSSCCSSHH-HHHHHHH---HHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCccccccHH-HHHHHHH---HHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 599999998765 5888886 6776 466765 67788888888887644
No 5
>g1hym.1 d.40.1.1 (A:,B:) Trypsin inhibitor V {Pumpkin (Cucurbita maxima) [TaxId: 3661]}
Probab=36.25 E-value=10 Score=25.88 Aligned_cols=23 Identities=30% Similarity=0.704 Sum_probs=20.4
Q ss_pred ceeeeccCCCCCCCCCCCcce-ee
Q 025494 115 PTIFLKEGDLIPPDVDPDTVR-WI 137 (252)
Q Consensus 115 PtvFLkEGdsvPpdVDPdtVR-WI 137 (252)
-.+.|.||.+++.|.++|-|| |+
T Consensus 32 ~v~vlp~gs~vt~Dfr~~RVrv~V 55 (68)
T g1hym.1 32 KAVILEEGTPVTKDFRCNRVRIWV 55 (68)
T ss_dssp EEEEEECCSCCCCCCCTTEEEEEE
T ss_pred eEEEeeCCCcccCcccCCEEEEEE
Confidence 368899999999999999998 54
No 6
>d1dwma_ d.40.1.1 (A:) Trypsin inhibitor LUTI {Flax (Linum usitatissimum) [TaxId: 4006]}
Probab=32.80 E-value=12 Score=25.57 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=20.3
Q ss_pred eeeeccCCCCCCCCCCCcce-eec
Q 025494 116 TIFLKEGDLIPPDVDPDTVR-WIP 138 (252)
Q Consensus 116 tvFLkEGdsvPpdVDPdtVR-WIP 138 (252)
.+.|.||.+++.|.++|-|| |+=
T Consensus 34 v~v~~~gs~vt~Dfr~~RVrv~Vd 57 (69)
T d1dwma_ 34 AIVLKEGSAMTKDFRCDRVWVIVN 57 (69)
T ss_dssp EEEEETTCCCCCSCCTTEEEEEEC
T ss_pred EEEeeCCCcccCcccCCEEEEEEC
Confidence 67899999999999999998 553
No 7
>d1csei_ d.40.1.1 (I:) Eglin C {Leech (Hirudo medicinalis) [TaxId: 6421]}
Probab=31.52 E-value=8.7 Score=25.83 Aligned_cols=22 Identities=32% Similarity=0.532 Sum_probs=20.5
Q ss_pred eeeeccCCCCCCCCCCCcce-ee
Q 025494 116 TIFLKEGDLIPPDVDPDTVR-WI 137 (252)
Q Consensus 116 tvFLkEGdsvPpdVDPdtVR-WI 137 (252)
.++|.||.+++.|.++|-|| |+
T Consensus 27 v~v~p~gs~vt~Dfr~~RVrv~V 49 (63)
T d1csei_ 27 VYFLPEGSPVTLDLRYNRVRVFY 49 (63)
T ss_dssp EEEEETTCCEECCCCTTEEEEEE
T ss_pred EEEEeCCCcccCcccCCEEEEEE
Confidence 78999999999999999998 76
No 8
>d1wiba_ d.47.1.1 (A:) 60S ribosomal protein L12 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.02 E-value=14 Score=26.48 Aligned_cols=36 Identities=17% Similarity=0.312 Sum_probs=23.4
Q ss_pred cCCCCCCCCCCCcceeecCCCCc--ccccccccHHHHh
Q 025494 121 EGDLIPPDVDPDTVRWIPANHPF--ATTANDIDEDLAQ 156 (252)
Q Consensus 121 EGdsvPpdVDPdtVRWIPaNHPF--Att~s~iDEdlAq 156 (252)
.|.+-||-+||+.|++|=-.=+= |+.+.-|...|.+
T Consensus 3 ~~~~~ppK~dp~~v~~Ikl~v~gG~A~p~PplgP~LGp 40 (92)
T d1wiba_ 3 SGSSGPPKFDPNEVKVVYLRCTGGEVGATSALAPKIGP 40 (92)
T ss_dssp CCCCCCCCCCSSSCEEEEEEEETTCCCCSSCSHHHHTT
T ss_pred CcCCCCCCCCCCceEEEEEEEecCccCCCCCccccccc
Confidence 58889999999999998422111 3334445555655
No 9
>d2zd1b1 e.8.1.2 (B:5-428) HIV-1 reverse transcriptase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=25.71 E-value=15 Score=31.48 Aligned_cols=38 Identities=21% Similarity=0.473 Sum_probs=28.3
Q ss_pred hHHHHHhcccccCCcCCCCCCccCCCCCCcceeecCCCch-hhccce
Q 025494 40 VEDLVRRGQLRSDRRGISRPLKYEDPFNNPLVKVGKSNST-MEMCGK 85 (252)
Q Consensus 40 VaDLvRRGQLrSdrRgis~plkYeDPFNNPlVKi~k~~st-v~m~GK 85 (252)
|.+|.+.|.++- ..=+.|||.|++-|-|.+++ ..||.-
T Consensus 34 i~~ll~~G~I~~--------~~s~Sp~~sPvf~V~KKdg~k~R~~iD 72 (424)
T d2zd1b1 34 CTEMEKEGKISK--------IGPENPYNTPVFAIKKKDSTKWRKLVD 72 (424)
T ss_dssp HHHHHHTTSEEE--------CCTTCCCBBCEEEECCTTCSSCEEEEC
T ss_pred HHHHHHCCeeEe--------cCCCCCCcCCeEEEEeCCCCceEEEEc
Confidence 467888888762 11257999999999998776 888853
No 10
>d1ztwa1 e.8.1.2 (A:24-278) MMLV reverse transcriptase {Moloney murine leukemia virus, MoMLV [TaxId: 11801]}
Probab=24.63 E-value=17 Score=28.10 Aligned_cols=35 Identities=26% Similarity=0.512 Sum_probs=27.2
Q ss_pred hHHHHHhcccccCCcCCCCCCccCCCCCCcceeecCCCch-hhccc
Q 025494 40 VEDLVRRGQLRSDRRGISRPLKYEDPFNNPLVKVGKSNST-MEMCG 84 (252)
Q Consensus 40 VaDLvRRGQLrSdrRgis~plkYeDPFNNPlVKi~k~~st-v~m~G 84 (252)
|.+|+..|.++- -+.||+.|++-|.|.+++ ..||.
T Consensus 55 i~~ll~~G~I~p----------~~s~~~sp~~~V~Kk~~~~~R~v~ 90 (255)
T d1ztwa1 55 IQRLLDQGILVP----------CQSPWNTPLLPVKKPGTNDYRPVQ 90 (255)
T ss_dssp HHHHHHHTSEEE----------ECCSCBCCEEECCSSSSCCCCEEE
T ss_pred HHHHhhhceeee----------cCCCcccccccccccccceEEEee
Confidence 688899988862 134899999999988764 67776
No 11
>d2p0ma1 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=24.63 E-value=15 Score=32.60 Aligned_cols=45 Identities=18% Similarity=0.326 Sum_probs=34.6
Q ss_pred ecHHHHHHHHhhhhccccccCceeeeccCCCCCCCCCCCcceeecCCCCcc
Q 025494 94 LTKEQQTIHQKRRSRAYQWKRPTIFLKEGDLIPPDVDPDTVRWIPANHPFA 144 (252)
Q Consensus 94 LT~eqq~~HQkRRsrAYqWKRPtvFLkEGdsvPpdVDPdtVRWIPaNHPFA 144 (252)
|=+||+..--.-|.+.|+|+.- .+-+|-.||+.+++.||.+--|.
T Consensus 12 ~~~~~R~~EL~~~~~~Y~w~~~------~~G~P~~~~~~~~~~lP~de~f~ 56 (551)
T d2p0ma1 12 LFQKHREQELEERRKLYQWGSW------KEGLILNVAGSKLTDLPVDERFL 56 (551)
T ss_dssp TTHHHHHHHHHHHHHHSCEECS------STTSCCEESCSSGGGSCGGGSCC
T ss_pred HHHHHHHHHHHHHHHhcCCCCC------CCCCCcccCccccccCChhhccc
Confidence 4466666665666689999742 33489999999999999998885
No 12
>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.74 E-value=11 Score=25.02 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=15.0
Q ss_pred cccccCceeeeccCCCCC
Q 025494 109 AYQWKRPTIFLKEGDLIP 126 (252)
Q Consensus 109 AYqWKRPtvFLkEGdsvP 126 (252)
+|+|.-|+|++.|.++.|
T Consensus 2 ~~~w~~~pi~v~EN~~~~ 19 (104)
T d2omzb1 2 LGSWVIPPISCPENEKGP 19 (104)
T ss_dssp STTEECCCCCEESSCCSS
T ss_pred CCcccCCcEEEeCCCCCC
Confidence 589999999999987543
No 13
>d1pcsa_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]}
Probab=22.33 E-value=24 Score=23.27 Aligned_cols=22 Identities=27% Similarity=0.697 Sum_probs=17.4
Q ss_pred cccccCceeeeccCCCCCCCCCCCcceeecC
Q 025494 109 AYQWKRPTIFLKEGDLIPPDVDPDTVRWIPA 139 (252)
Q Consensus 109 AYqWKRPtvFLkEGdsvPpdVDPdtVRWIPa 139 (252)
.+.|.-++|-++.|| ||+|+-.
T Consensus 13 ~~~F~P~~i~v~~Gd---------tV~~~n~ 34 (98)
T d1pcsa_ 13 ALVFEPSTVTIKAGE---------EVKWVNN 34 (98)
T ss_dssp CSSEESSEEEECTTC---------EEEEEEC
T ss_pred ceEEeCCEEEECCCC---------EEEEeEC
Confidence 356777888899996 8999854
No 14
>d1mu2a2 e.8.1.2 (A:3-429) HIV-1 reverse transcriptase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=20.92 E-value=20 Score=30.59 Aligned_cols=37 Identities=24% Similarity=0.437 Sum_probs=26.5
Q ss_pred hHHHHHhcccccCCcCCCCCCccCCCCCCcceeecCCC-chhhccc
Q 025494 40 VEDLVRRGQLRSDRRGISRPLKYEDPFNNPLVKVGKSN-STMEMCG 84 (252)
Q Consensus 40 VaDLvRRGQLrSdrRgis~plkYeDPFNNPlVKi~k~~-stv~m~G 84 (252)
|.+|.+.|.++. -....|||.|.+-|-|.+ ....||.
T Consensus 36 i~ell~~G~I~~--------~ps~Sp~~sPvf~V~KKd~gk~Rl~v 73 (427)
T d1mu2a2 36 CEKMEKEGQLEE--------APPTNPYNTPTFAIKKKDKNKWRMLI 73 (427)
T ss_dssp HHHHHHHTSEEE--------CCTTCCCBBCEEECCCCC----CEEE
T ss_pred HHHHHHCCeEEe--------CCCCCcCcCceEEEEcCCCCCcEEEE
Confidence 578888888872 113679999999999887 4578885
No 15
>d1to2i_ d.40.1.1 (I:) Chymotrypsin inhibitor CI-2 {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=20.68 E-value=13 Score=25.03 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=19.8
Q ss_pred eeeeccCCCCCCCCCCCcce-ee
Q 025494 116 TIFLKEGDLIPPDVDPDTVR-WI 137 (252)
Q Consensus 116 tvFLkEGdsvPpdVDPdtVR-WI 137 (252)
.+.|.+|.+++.|.++|-|| |+
T Consensus 29 v~v~p~gs~vt~Dfr~~RVrv~V 51 (64)
T d1to2i_ 29 IIVLPVGTIVTKEYRIDRVRLFV 51 (64)
T ss_dssp EEEEETTCEEECBCCTTEEEEEE
T ss_pred EEEecCCCcccCcccCCEEEEEE
Confidence 67899999999999999998 44
Done!