BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025495
(252 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YCD|A Chain A, Crystal Structure Of Yeast Fsh1/yhr049w, A Member Of The
Serine Hydrolase Family
pdb|1YCD|B Chain B, Crystal Structure Of Yeast Fsh1/yhr049w, A Member Of The
Serine Hydrolase Family
Length = 243
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 30/153 (19%)
Query: 53 WFQFNKEFTEYTNLEECVSYLTEYITSNGPFDGLLGFSQGATLSALLLGYQAQGKVLKEH 112
WF ++ E + ++ E + + ++I +NGP+DG++G SQGA LS+++ ++ ++ +H
Sbjct: 74 WF-YHSEISHELDISEGLKSVVDHIKANGPYDGIVGLSQGAALSSIITNKISE--LVPDH 130
Query: 113 PPMKLFVSISGSKFRDPS--------ICEVAYKDTFNVK-----SAHFI-GAKDWLKLPS 158
P K+ V ISG F +P I E ++D+F VK FI GA D +PS
Sbjct: 131 PQFKVSVVISGYSFTEPDPEHPGELRITE-KFRDSFAVKPDMKTKMIFIYGASDQ-AVPS 188
Query: 159 EELATAF-----------HNPLIIRHPQGHTVP 180
+ L HP GH VP
Sbjct: 189 VRSKYLYDIYLKAQNGNKEKVLAYEHPGGHMVP 221
>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
pdb|1UR5|C Chain C, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
Length = 309
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 8/114 (7%)
Query: 137 KDTFNVKSAHFIGAKDWLKLPSEELATAFHNPLIIRHPQGHTVPRLDEAATELLRGWTVD 196
+ ++ A F+G+ L ++EL ++ PQG LD + G+ V
Sbjct: 2 RKKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKA---LDLYEASPIEGFDVR 58
Query: 197 ILRCNNRGLNNNYDEMENGLIENVQKEPRTENDSKEEMINANAGKTEVEVLDAA 250
+ G NN D + +I PR S+E++I NA T + AA
Sbjct: 59 V-----TGTNNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAA 107
>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXH|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXK|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXK|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 8/114 (7%)
Query: 137 KDTFNVKSAHFIGAKDWLKLPSEELATAFHNPLIIRHPQGHTVPRLDEAATELLRGWTVD 196
+ ++ A F+G+ L ++EL ++ PQG LD + G+ V
Sbjct: 2 RKKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKA---LDLYEASPIEGFDVR 58
Query: 197 ILRCNNRGLNNNYDEMENGLIENVQKEPRTENDSKEEMINANAGKTEVEVLDAA 250
+ G NN D + +I PR S+E++I NA T + AA
Sbjct: 59 V-----TGTNNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAA 107
>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXI|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXJ|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXJ|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 8/114 (7%)
Query: 137 KDTFNVKSAHFIGAKDWLKLPSEELATAFHNPLIIRHPQGHTVPRLDEAATELLRGWTVD 196
+ ++ A F+G+ L ++EL ++ PQG LD + G+ V
Sbjct: 2 RKKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKA---LDLYEASPIEGFDVR 58
Query: 197 ILRCNNRGLNNNYDEMENGLIENVQKEPRTENDSKEEMINANAGKTEVEVLDAA 250
+ G NN D + +I PR S+E++I NA T + AA
Sbjct: 59 V-----TGTNNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAA 107
>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUY|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1UXG|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface.
pdb|1UXG|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
Length = 309
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 8/114 (7%)
Query: 137 KDTFNVKSAHFIGAKDWLKLPSEELATAFHNPLIIRHPQGHTVPRLDEAATELLRGWTVD 196
+ ++ A F+G+ L ++EL ++ PQG LD + G+ V
Sbjct: 2 RKKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKA---LDLYEASPIEGFDVR 58
Query: 197 ILRCNNRGLNNNYDEMENGLIENVQKEPRTENDSKEEMINANAGKTEVEVLDAA 250
+ G NN D + +I PR S+E++I NA T + AA
Sbjct: 59 V-----TGTNNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAA 107
>pdb|4EO2|A Chain A, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EO2|B Chain B, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EO2|C Chain C, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EO2|D Chain D, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EO2|E Chain E, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EO2|F Chain F, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EP0|A Chain A, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EP0|B Chain B, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EP0|C Chain C, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EP0|D Chain D, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EP0|E Chain E, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EP0|F Chain F, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EP0|G Chain G, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EP0|H Chain H, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EP0|I Chain I, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EP0|J Chain J, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EP0|K Chain K, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EP0|L Chain L, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
Length = 583
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 34 FPAGGKSDIEGIFPPPYFEWFQFNKEFTEYTNLEECVSYLTEY 76
FP+ S +GI+ P W F +Y +L+E + YLT Y
Sbjct: 193 FPSSSGSTHDGIYNPYDMYW------FNDYESLKEVMDYLTGY 229
>pdb|3K2I|A Chain A, Human Acyl-Coenzyme A Thioesterase 4
pdb|3K2I|B Chain B, Human Acyl-Coenzyme A Thioesterase 4
Length = 422
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 20/129 (15%)
Query: 51 FEWFQFNKEFTEYTNLEECVSYLTEYITSNGPFDGLLGFSQGATLSALLLGYQAQGKVLK 110
FE N + EE V Y+ ++ GP GLLG S GA + + + LK
Sbjct: 194 FEDLPNNMDNISLEYFEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASF------LK 247
Query: 111 EHPPMKLFVSISGS--------KFRDPSICEVAYKDTFNVKSAHFIGAKDWLKLPSEELA 162
+ VSI+GS ++ SI + Y D +K A F G D + + L
Sbjct: 248 N---VSATVSINGSGISGNTAINYKHSSIPPLGY-DLRRIKVA-FSGLVDIVDI-RNALV 301
Query: 163 TAFHNPLII 171
+ NP +I
Sbjct: 302 GGYKNPSMI 310
>pdb|3THW|B Chain B, Human Mutsbeta Complexed With An Idl Of 4 Bases (Loop4)
And Adp
pdb|3THX|B Chain B, Human Mutsbeta Complexed With An Idl Of 3 Bases (Loop3)
And Adp
pdb|3THY|B Chain B, Human Mutsbeta Complexed With An Idl Of 2 Bases (Loop2)
And Adp
pdb|3THZ|B Chain B, Human Mutsbeta Complexed With An Idl Of 6 Bases (Loop6)
And Adp
Length = 918
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 16/83 (19%)
Query: 94 TLSALLLGYQAQGKVLKEHPPMKLFVSISGSKFRDPSICEVAYKDTFNVKSAHFIGAKDW 153
+ + + Q K+LK P +V++SG +F + E+ SA DW
Sbjct: 506 VIDEIRMHLQEIRKILKN--PSAQYVTVSGQEF----MIEIK-------NSAVSCIPTDW 552
Query: 154 LKLPSEELATAFHNPLII---RH 173
+K+ S + + FH+P I+ RH
Sbjct: 553 VKVGSTKAVSRFHSPFIVENYRH 575
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 92 GATLSALLLGY--QAQGKVLKEHPPMKLFV-SISGSKFRDPSICEVAYKDTFNV 142
GAT+ L Y G ++ P +LF+ I G+ + D + E Y DT+N
Sbjct: 100 GATVKQQTLAYVDNVSGPTAEQSPDSELFLDGIFGAAYPDNTAMEAEYGDTYNT 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,451,628
Number of Sequences: 62578
Number of extensions: 376655
Number of successful extensions: 727
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 723
Number of HSP's gapped (non-prelim): 11
length of query: 252
length of database: 14,973,337
effective HSP length: 97
effective length of query: 155
effective length of database: 8,903,271
effective search space: 1380007005
effective search space used: 1380007005
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)