BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025496
         (252 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2E4U|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
           Ii Metabotropic Glutamate Receptor Complexed With
           L-glutamate
 pdb|2E4U|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
           Ii Metabotropic Glutamate Receptor Complexed With
           L-glutamate
 pdb|2E4V|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
           Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
 pdb|2E4V|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
           Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
 pdb|2E4W|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
           Ii Metabotropic Glutamate Receptor Complexed With
           1s,3s-Acpd
 pdb|2E4W|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
           Ii Metabotropic Glutamate Receptor Complexed With
           1s,3s-Acpd
 pdb|2E4X|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
           Ii Metabotropic Glutamate Receptor Complexed With
           1s,3r-Acpd
 pdb|2E4X|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
           Ii Metabotropic Glutamate Receptor Complexed With
           1s,3r-Acpd
 pdb|2E4Y|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
           Ii Metabotropic Glutamate Receptor Complexed With
           2r,4r-Apdc
 pdb|2E4Y|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
           Ii Metabotropic Glutamate Receptor Complexed With
           2r,4r-Apdc
          Length = 555

 Score = 29.6 bits (65), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 12/117 (10%)

Query: 135 EEKIKNL-LEQVETLGEAGKVDEAEALMRKV-EILNVEKTTLTQQSQNDKVLMMAQEKKM 192
           E +++N+ +   E +G +      ++++R++ +  N     L  +S + + L+ A  +  
Sbjct: 209 EARLRNICIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVLFMRSDDSRELIAAANR-- 266

Query: 193 ALCEICGSF-LVANDAAERTQSHISGKQHIGYGMVRDFITEYKVCQLFIVDLLFQNL 248
               +  SF  VA+D     +S + G +H+ YG +   +  + V Q    D  FQ+L
Sbjct: 267 ----VNASFTWVASDGWGAQESIVKGSEHVAYGAITLELASHPVRQF---DRYFQSL 316


>pdb|3SM9|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor 3
           Precursor In Presence Of Ly341495 Antagonist
          Length = 479

 Score = 28.9 bits (63), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 24/121 (19%)

Query: 149 GEAG-KVDEAEALMRKVEILNVEKTTLTQ-------------QSQNDKVLMM------AQ 188
           GE G +  E EA +R + I   EK   +              Q  N +V+++      ++
Sbjct: 198 GETGIEAFEQEARLRNISIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVLFMRSDDSR 257

Query: 189 EKKMALCEICGSF-LVANDAAERTQSHISGKQHIGYGMVRDFITEYKVCQLFIVDLLFQN 247
           E   A      SF  VA+D     +S I G +H+ YG +   +    V Q    D  FQ+
Sbjct: 258 ELIAAASRANASFTWVASDGWGAQESIIKGSEHVAYGAITLELASQPVRQF---DRYFQS 314

Query: 248 L 248
           L
Sbjct: 315 L 315


>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate
           Carboxylase
 pdb|3BG5|B Chain B, Crystal Structure Of Staphylococcus Aureus Pyruvate
           Carboxylase
 pdb|3BG5|C Chain C, Crystal Structure Of Staphylococcus Aureus Pyruvate
           Carboxylase
 pdb|3BG5|D Chain D, Crystal Structure Of Staphylococcus Aureus Pyruvate
           Carboxylase
          Length = 1173

 Score = 27.7 bits (60), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 140 NLLEQVETLGEAGKVDEAEALMRKVEIL--NVEKTTLTQQSQNDKVLMMAQ 188
           NL +Q ++LG   + DE + + R+V  L  ++ K T + +   D  L M Q
Sbjct: 864 NLSQQAKSLGLGERFDEVKDMYRRVNFLFGDIVKVTPSSKVVGDMALYMVQ 914


>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
           Carboxylase
 pdb|4HNU|B Chain B, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
           Carboxylase
 pdb|4HNU|C Chain C, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
           Carboxylase
 pdb|4HNU|D Chain D, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
           Carboxylase
          Length = 1173

 Score = 27.7 bits (60), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 140 NLLEQVETLGEAGKVDEAEALMRKVEIL--NVEKTTLTQQSQNDKVLMMAQ 188
           NL +Q ++LG   + DE + + R+V  L  ++ K T + +   D  L M Q
Sbjct: 864 NLSQQAKSLGLGERFDEVKDMYRRVNFLFGDIVKVTPSSKVVGDMALYMVQ 914


>pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
           Complex With Coenzyme A
 pdb|3HO8|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
           Complex With Coenzyme A
 pdb|3HO8|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
           Complex With Coenzyme A
 pdb|3HO8|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
           Complex With Coenzyme A
          Length = 1150

 Score = 27.7 bits (60), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 140 NLLEQVETLGEAGKVDEAEALMRKVEIL--NVEKTTLTQQSQNDKVLMMAQ 188
           NL +Q ++LG   + DE + + R+V  L  ++ K T + +   D  L M Q
Sbjct: 841 NLSQQAKSLGLGERFDEVKDMYRRVNFLFGDIVKVTPSSKVVGDMALYMVQ 891


>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
           Carboxylase
 pdb|4HNV|B Chain B, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
           Carboxylase
 pdb|4HNV|C Chain C, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
           Carboxylase
 pdb|4HNV|D Chain D, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
           Carboxylase
          Length = 1173

 Score = 27.7 bits (60), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 140 NLLEQVETLGEAGKVDEAEALMRKVEIL--NVEKTTLTQQSQNDKVLMMAQ 188
           NL +Q ++LG   + DE + + R+V  L  ++ K T + +   D  L M Q
Sbjct: 864 NLSQQAKSLGLGERFDEVKDMYRRVNFLFGDIVKVTPSSKVVGDMALYMVQ 914


>pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
           Mutant
 pdb|3HB9|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
           Mutant
 pdb|3HB9|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
           Mutant
 pdb|3HB9|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
           Mutant
          Length = 1150

 Score = 27.7 bits (60), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 140 NLLEQVETLGEAGKVDEAEALMRKVEIL--NVEKTTLTQQSQNDKVLMMAQ 188
           NL +Q ++LG   + DE + + R+V  L  ++ K T + +   D  L M Q
Sbjct: 841 NLSQQAKSLGLGERFDEVKDMYRRVNFLFGDIVKVTPSSKVVGDMALYMVQ 891


>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
           Carboxylase
 pdb|4HNT|B Chain B, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
           Carboxylase
 pdb|4HNT|C Chain C, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
           Carboxylase
 pdb|4HNT|D Chain D, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
           Carboxylase
          Length = 1173

 Score = 27.7 bits (60), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 140 NLLEQVETLGEAGKVDEAEALMRKVEIL--NVEKTTLTQQSQNDKVLMMAQ 188
           NL +Q ++LG   + DE + + R+V  L  ++ K T + +   D  L M Q
Sbjct: 864 NLSQQAKSLGLGERFDEVKDMYRRVNFLFGDIVKVTPSSKVVGDMALYMVQ 914


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,922,689
Number of Sequences: 62578
Number of extensions: 198761
Number of successful extensions: 774
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 767
Number of HSP's gapped (non-prelim): 16
length of query: 252
length of database: 14,973,337
effective HSP length: 97
effective length of query: 155
effective length of database: 8,903,271
effective search space: 1380007005
effective search space used: 1380007005
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)