Query 025496
Match_columns 252
No_of_seqs 110 out of 261
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 11:29:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025496.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025496hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l8d_A DNA double-strand break 93.9 0.36 1.2E-05 36.8 8.9 12 192-203 47-58 (112)
2 3cw1_L U1 small nuclear ribonu 82.6 0.38 1.3E-05 35.3 1.0 29 193-222 4-32 (77)
3 3na7_A HP0958; flagellar bioge 80.8 12 0.0004 32.5 10.1 57 89-149 61-124 (256)
4 3na7_A HP0958; flagellar bioge 71.7 42 0.0014 28.9 11.1 17 190-206 220-236 (256)
5 2d9n_A Cleavage and polyadenyl 70.1 2.4 8.2E-05 30.4 2.3 29 30-67 6-34 (77)
6 1lq7_A Alpha3W; three helix bu 68.4 12 0.00043 25.6 5.4 30 130-159 26-55 (67)
7 1lq7_A Alpha3W; three helix bu 66.9 12 0.00042 25.6 5.2 42 130-174 3-44 (67)
8 2fc6_A Nuclear, target of EGR1 64.9 2.2 7.5E-05 28.8 1.0 25 34-67 20-45 (50)
9 1x0t_A Ribonuclease P protein 64.2 28 0.00095 27.0 7.6 65 132-208 17-81 (120)
10 2cqe_A KIAA1064 protein; CCCH 62.9 2.8 9.6E-05 31.6 1.5 15 33-47 12-26 (98)
11 2rpp_A Muscleblind-like protei 62.2 4.7 0.00016 30.0 2.6 18 31-48 14-31 (89)
12 2e5s_A Otthump00000018578; ZF- 60.6 4.5 0.00015 30.5 2.3 13 35-47 21-33 (98)
13 3d2n_A Muscleblind-like protei 58.4 3.2 0.00011 30.5 1.1 15 57-71 56-70 (83)
14 3d2q_A Muscleblind-like protei 57.5 4.5 0.00015 28.4 1.7 23 34-66 6-30 (70)
15 1zu1_A DSRBP-ZFA, RNA binding 54.5 3.3 0.00011 32.4 0.6 35 191-230 31-65 (127)
16 1gp8_A Protein (scaffolding pr 53.7 9.9 0.00034 24.3 2.6 31 136-166 8-38 (40)
17 2lo3_A SAGA-associated factor 53.4 4 0.00014 26.6 0.7 28 190-217 15-42 (44)
18 1zu1_A DSRBP-ZFA, RNA binding 50.5 7.1 0.00024 30.4 2.0 32 191-225 92-123 (127)
19 3pwf_A Rubrerythrin; non heme 49.8 41 0.0014 27.5 6.6 12 190-201 136-147 (170)
20 2lw1_A ABC transporter ATP-bin 49.7 71 0.0024 23.1 7.7 53 126-178 19-79 (89)
21 3pxg_A Negative regulator of g 49.3 67 0.0023 29.8 8.9 49 130-178 395-443 (468)
22 1yuz_A Nigerythrin; rubrythrin 48.9 40 0.0014 28.3 6.5 12 190-201 169-180 (202)
23 2k3r_A Ribonuclease P protein 48.4 27 0.00092 27.2 5.0 64 133-208 13-76 (123)
24 4afl_A P29ING4, inhibitor of g 47.7 82 0.0028 23.2 7.6 71 92-166 22-94 (104)
25 4ani_A Protein GRPE; chaperone 47.0 69 0.0024 27.4 7.8 94 129-238 59-158 (213)
26 2jee_A YIIU; FTSZ, septum, coi 46.8 82 0.0028 23.0 7.2 16 160-175 53-68 (81)
27 2yrk_A Zinc finger homeobox pr 45.4 6.7 0.00023 26.8 0.9 31 193-226 14-44 (55)
28 1yzm_A FYVE-finger-containing 44.7 68 0.0023 21.5 6.7 42 134-175 7-48 (51)
29 2rhk_C Cleavage and polyadenyl 43.3 8.4 0.00029 27.2 1.2 28 30-66 12-39 (72)
30 3frt_A Charged multivesicular 43.2 1.5E+02 0.0053 25.2 10.3 65 95-175 10-74 (218)
31 3d2q_A Muscleblind-like protei 42.9 8.2 0.00028 27.0 1.1 24 35-68 43-66 (70)
32 2h8b_A Insulin-like 3; insulin 42.4 5.5 0.00019 23.1 0.1 9 39-47 18-26 (26)
33 3v1a_A Computational design, M 42.4 72 0.0025 21.1 6.4 39 134-172 6-44 (48)
34 2lf0_A Uncharacterized protein 42.3 74 0.0025 25.0 6.6 49 128-176 9-57 (123)
35 3onj_A T-snare VTI1; helix, HA 41.4 1E+02 0.0035 22.6 9.9 86 82-178 3-89 (97)
36 1z0k_B FYVE-finger-containing 41.2 87 0.003 22.2 6.3 43 133-175 24-66 (69)
37 3mjh_B Early endosome antigen 39.6 8.2 0.00028 23.8 0.6 21 193-216 6-26 (34)
38 2qyw_A Vesicle transport throu 39.2 1.2E+02 0.004 22.6 10.2 20 82-101 17-36 (102)
39 1skh_A Major prion protein 2; 38.9 5.1 0.00018 24.1 -0.4 22 41-62 5-26 (30)
40 2dq0_A Seryl-tRNA synthetase; 38.1 47 0.0016 31.4 5.8 46 131-178 47-92 (455)
41 1m1j_B Fibrinogen beta chain; 37.9 94 0.0032 29.6 7.9 94 84-178 93-191 (464)
42 2i5o_A DNA polymerase ETA; zin 37.7 9.1 0.00031 24.3 0.6 26 191-216 8-33 (39)
43 1lko_A Rubrerythrin all-iron(I 35.8 1.7E+02 0.0059 23.9 8.4 11 191-201 154-164 (191)
44 2r6a_C DNAG primase, helicase 35.7 94 0.0032 23.1 6.4 38 134-171 103-140 (143)
45 1zr9_A Zinc finger protein 593 35.6 13 0.00044 29.4 1.3 30 190-222 48-77 (124)
46 3mhs_E SAGA-associated factor 34.8 7.8 0.00027 29.4 -0.1 23 190-216 73-95 (96)
47 3oja_B Anopheles plasmodium-re 34.4 2.9E+02 0.0099 25.7 11.7 22 157-178 532-553 (597)
48 1x4t_A Hypothetical protein LO 34.4 92 0.0032 23.3 5.8 45 87-145 24-68 (92)
49 1znf_A 31ST zinc finger from X 33.7 20 0.0007 18.1 1.6 25 193-222 2-26 (27)
50 2elr_A Zinc finger protein 406 33.6 19 0.00065 19.8 1.5 23 190-215 7-29 (36)
51 2yru_A Steroid receptor RNA ac 33.2 1.6E+02 0.0056 22.6 7.6 51 95-163 36-86 (118)
52 3qne_A Seryl-tRNA synthetase, 32.9 73 0.0025 30.5 6.3 41 129-178 54-94 (485)
53 1z0j_B FYVE-finger-containing 32.2 1.2E+02 0.0042 20.8 6.5 43 133-175 13-55 (59)
54 3u9g_A Zinc finger CCCH-type a 31.9 18 0.00061 31.5 1.7 27 35-66 90-116 (229)
55 3hd7_A Vesicle-associated memb 31.9 1.3E+02 0.0045 21.8 6.3 35 129-168 26-60 (91)
56 2gd5_A Charged multivesicular 31.6 2E+02 0.007 23.1 9.7 37 139-175 38-74 (179)
57 6rxn_A Rubredoxin; electron tr 31.6 11 0.00037 24.7 0.2 10 193-202 31-40 (46)
58 1e52_A Excinuclease ABC subuni 31.3 90 0.0031 21.6 5.0 38 133-170 21-58 (63)
59 2aus_D NOP10, ribosome biogene 31.2 11 0.00036 26.3 0.1 14 190-203 3-16 (60)
60 3u8p_A Cytochrome B562 integra 30.4 43 0.0015 30.8 3.9 42 133-178 107-148 (347)
61 1dkg_A Nucleotide exchange fac 29.1 2.1E+02 0.0073 23.8 8.0 48 191-238 85-139 (197)
62 1t72_A Phosphate transport sys 29.0 2E+02 0.007 23.1 7.8 31 130-160 19-49 (227)
63 2lw1_A ABC transporter ATP-bin 28.9 1.4E+02 0.0049 21.4 6.1 27 86-112 20-46 (89)
64 1sum_B Phosphate transport sys 28.3 2.5E+02 0.0084 23.0 8.9 81 129-217 117-199 (235)
65 3hho_A CO-chaperone protein HS 28.0 2.4E+02 0.0081 22.7 8.3 47 130-176 121-170 (174)
66 1njq_A Superman protein; zinc- 27.9 15 0.00051 21.0 0.3 22 191-215 5-26 (39)
67 4rxn_A Rubredoxin; electron tr 27.7 14 0.00048 25.0 0.2 10 193-202 37-46 (54)
68 2elt_A Zinc finger protein 406 27.4 22 0.00076 19.5 1.1 23 190-215 7-29 (36)
69 2i0m_A Phosphate transport sys 27.2 2.4E+02 0.0082 22.5 10.9 81 129-217 117-199 (216)
70 1ard_A Yeast transcription fac 26.8 19 0.00064 18.5 0.6 20 193-215 3-22 (29)
71 3r8n_T 30S ribosomal protein S 26.6 1.4E+02 0.0046 21.9 5.5 35 133-167 21-55 (85)
72 2kvf_A Zinc finger and BTB dom 26.2 21 0.00073 18.3 0.8 21 192-215 3-23 (28)
73 2apo_B Ribosome biogenesis pro 26.0 15 0.00051 25.5 0.1 11 191-201 5-15 (60)
74 2k5c_A Uncharacterized protein 25.7 14 0.00048 27.5 -0.1 14 189-202 5-18 (95)
75 1p7a_A BF3, BKLF, kruppel-like 25.5 32 0.0011 19.0 1.6 23 190-215 9-31 (37)
76 1lrz_A FEMA, factor essential 25.4 2.4E+02 0.0084 25.5 8.4 10 196-205 312-321 (426)
77 1yk4_A Rubredoxin, RD; electro 25.2 17 0.00057 24.3 0.2 9 193-201 36-44 (52)
78 1rik_A E6APC1 peptide; E6-bind 25.1 23 0.0008 18.2 0.8 20 193-215 3-22 (29)
79 2lvu_A Zinc finger and BTB dom 30.6 16 0.00053 18.6 0.0 11 193-203 3-13 (26)
80 1wle_A Seryl-tRNA synthetase; 24.5 1.4E+02 0.0048 28.5 6.6 24 155-178 116-139 (501)
81 1srk_A Zinc finger protein ZFP 24.4 20 0.00069 19.6 0.5 23 190-215 5-27 (35)
82 2d9m_A Zinc finger CCCH-type d 24.2 18 0.00061 25.8 0.3 23 35-66 21-43 (69)
83 2lvr_A Zinc finger and BTB dom 29.8 16 0.00056 18.9 0.0 21 192-215 3-23 (30)
84 1e8j_A Rubredoxin; iron-sulfur 23.9 18 0.0006 24.2 0.1 9 193-201 37-45 (52)
85 2m0d_A Zinc finger and BTB dom 23.9 18 0.00063 18.6 0.2 22 191-215 2-23 (30)
86 2v3b_B Rubredoxin 2, rubredoxi 23.8 18 0.00061 24.5 0.1 9 193-201 37-45 (55)
87 3r8s_X 50S ribosomal protein L 23.6 19 0.00065 26.1 0.3 13 193-205 2-14 (77)
88 1fxk_C Protein (prefoldin); ar 23.6 1.9E+02 0.0064 21.9 6.2 19 94-112 87-105 (133)
89 4gzn_C ZFP-57, zinc finger pro 23.4 31 0.0011 22.9 1.3 28 190-222 30-57 (60)
90 2yte_A Zinc finger protein 473 23.0 23 0.0008 20.3 0.6 23 190-215 8-30 (42)
91 2kvh_A Zinc finger and BTB dom 22.9 21 0.00072 18.3 0.3 21 192-215 3-23 (27)
92 2m0e_A Zinc finger and BTB dom 22.3 38 0.0013 17.0 1.4 21 192-215 2-22 (29)
93 2eoj_A Zinc finger protein 268 22.2 19 0.00064 21.0 -0.0 23 190-215 10-32 (44)
94 3alr_A Nanos protein; zinc-fin 22.0 21 0.00071 27.5 0.2 9 193-201 72-80 (106)
95 2ely_A Zinc finger protein 224 21.9 36 0.0012 20.0 1.3 23 190-215 10-32 (46)
96 4b6x_A AVRRPS4, avirulence pro 21.8 2.4E+02 0.0082 20.7 8.7 53 123-175 23-75 (90)
97 2ytb_A Zinc finger protein 32; 21.6 24 0.00083 20.2 0.5 23 190-215 9-31 (42)
98 2kn9_A Rubredoxin; metalloprot 21.5 21 0.00072 26.2 0.1 9 193-201 61-69 (81)
99 1dx8_A Rubredoxin; electron tr 21.3 22 0.00075 25.2 0.2 9 193-201 41-49 (70)
100 3lay_A Zinc resistance-associa 21.3 2.5E+02 0.0087 23.0 6.8 49 130-178 86-136 (175)
101 1xwm_A PHOU, phosphate uptake 21.2 1.8E+02 0.0062 23.4 6.0 81 129-217 117-199 (217)
102 1rim_A E6APC2 peptide; E6-bind 21.2 25 0.00087 19.3 0.5 25 193-222 3-27 (33)
103 1gd2_E Transcription factor PA 21.1 2.2E+02 0.0075 19.9 5.9 40 126-177 26-65 (70)
104 1s35_A Beta-I spectrin, spectr 20.9 2.9E+02 0.0098 21.8 7.1 50 128-178 153-202 (214)
105 3abq_A Ethanolamine ammonia-ly 20.7 23 0.00077 33.6 0.2 29 192-220 321-355 (453)
106 2qez_A Ethanolamine ammonia-ly 20.7 23 0.00077 33.6 0.2 16 205-220 337-356 (455)
107 2el5_A Zinc finger protein 268 20.5 25 0.00085 20.2 0.3 23 190-215 8-30 (42)
108 3u9g_A Zinc finger CCCH-type a 20.3 38 0.0013 29.5 1.5 10 33-43 150-159 (229)
109 1tjl_A DNAK suppressor protein 20.3 3.3E+02 0.011 21.6 8.0 13 191-203 110-122 (151)
110 1sfc_A VAMP 2, protein (synapt 20.2 2.6E+02 0.009 20.5 6.7 11 138-148 60-70 (96)
111 2vqe_T 30S ribosomal protein S 20.1 2.2E+02 0.0074 21.7 5.7 35 133-167 28-62 (106)
112 2yto_A Zinc finger protein 484 20.0 26 0.00088 20.7 0.3 23 190-215 10-32 (46)
No 1
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=93.94 E-value=0.36 Score=36.76 Aligned_cols=12 Identities=33% Similarity=0.808 Sum_probs=10.0
Q ss_pred ccccccchhhhc
Q 025496 192 MALCEICGSFLV 203 (252)
Q Consensus 192 l~VCdVCGA~Ls 203 (252)
-.+|+|||.-+.
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 468999999876
No 2
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A
Probab=82.60 E-value=0.38 Score=35.33 Aligned_cols=29 Identities=28% Similarity=0.721 Sum_probs=23.9
Q ss_pred cccccchhhhcccChhhHhhhhhcchhhhc
Q 025496 193 ALCEICGSFLVANDAAERTQSHISGKQHIG 222 (252)
Q Consensus 193 ~VCdVCGA~Ls~~D~d~Rl~dH~~GK~H~G 222 (252)
.-||.|..||. .|+..=...|..|+.|.+
T Consensus 4 YyCdYCd~~lt-~Ds~s~Rk~H~~G~kH~~ 32 (77)
T 3cw1_L 4 FYCDYCDTYLT-HDSPSVRKTHCSGRKHKE 32 (77)
T ss_pred cccccCCceec-CCCHHHHHHHHccHHHHH
Confidence 45999999975 677775678999999997
No 3
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=80.81 E-value=12 Score=32.48 Aligned_cols=57 Identities=12% Similarity=0.131 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCch-------HHHHHHHHHHHHHHHHHHHHHHhh
Q 025496 89 LAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISA-------EKSEQLSVLEEKIKNLLEQVETLG 149 (252)
Q Consensus 89 ~~~~L~~~i~d~drkI~~~k~RL~~~~~~~~~~~~~~-------~~~~~i~~l~~~I~~ll~~aE~LG 149 (252)
-..-++.-|.++..||.+.+.+|.... .+..-. ....++..++.+|..++.++|.+-
T Consensus 61 ~~~~~e~~i~~~~~ri~~~~~~l~~v~----~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~ 124 (256)
T 3na7_A 61 QVSKNEQTLQDTNAKIASIQKKMSEIK----SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKS 124 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCS----SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999996432 111111 234556666667777777666543
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=71.69 E-value=42 Score=28.87 Aligned_cols=17 Identities=35% Similarity=0.727 Sum_probs=11.4
Q ss_pred ccccccccchhhhcccC
Q 025496 190 KKMALCEICGSFLVAND 206 (252)
Q Consensus 190 qkl~VCdVCGA~Ls~~D 206 (252)
.+.-+|+-||.+|...+
T Consensus 220 ~~Iv~Cp~CgRIL~~~~ 236 (256)
T 3na7_A 220 GDMITCPYCGRILYAEG 236 (256)
T ss_dssp SSCEECTTTCCEEECSC
T ss_pred CCEEECCCCCeeEEeCc
Confidence 35567777777777654
No 5
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.15 E-value=2.4 Score=30.36 Aligned_cols=29 Identities=21% Similarity=0.599 Sum_probs=18.8
Q ss_pred CCCCCCCcchhhcCCChhHhhhhcccCCCCCCccccHH
Q 025496 30 KWDDKEVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQK 67 (252)
Q Consensus 30 ~f~D~~VCk~yL~G~CPhdLF~nTK~DlG~C~kiHde~ 67 (252)
.++-..||++||-|.|.. .| .|+-.|+..
T Consensus 6 ~~~k~~~C~~fl~G~C~~-------G~--~C~fsH~~~ 34 (77)
T 2d9n_A 6 SGEKTVVCKHWLRGLCKK-------GD--QCEFLHEYD 34 (77)
T ss_dssp SCCTTSBCHHHHTTCCSC-------TT--SSSSBCSCC
T ss_pred CCCcceeCHhHccCcCCC-------CC--CCCCccccc
Confidence 445567888888888832 12 576666643
No 6
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=68.38 E-value=12 Score=25.57 Aligned_cols=30 Identities=30% Similarity=0.563 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCHHHHHH
Q 025496 130 QLSVLEEKIKNLLEQVETLGEAGKVDEAEA 159 (252)
Q Consensus 130 ~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~ 159 (252)
.|.+|..+-.++-.++|+||--|+|..-..
T Consensus 26 rieelkkkweelkkkieelggggevkkvee 55 (67)
T 1lq7_A 26 RIEELKKKWEELKKKIEELGGGGEVKKVEE 55 (67)
T ss_dssp SHHHHHHHHHHHHHHHHHTTSSSTHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCCcchhHHHH
Confidence 355566666666677777777777755443
No 7
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=66.90 E-value=12 Score=25.59 Aligned_cols=42 Identities=38% Similarity=0.568 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHH
Q 025496 130 QLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTL 174 (252)
Q Consensus 130 ~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ek~~l 174 (252)
.+..|++++..+-.++..||--|.|++-.+ +-+.|+.+++++
T Consensus 3 rvkaleekvkaleekvkalggggrieelkk---kweelkkkieel 44 (67)
T 1lq7_A 3 RVKALEEKVKALEEKVKALGGGGRIEELKK---KWEELKKKIEEL 44 (67)
T ss_dssp SHHHHHHHHHHHHHHHHHSCCSSSHHHHHH---HHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHhcCCccHHHHHH---HHHHHHHHHHHh
Confidence 356778888888899999999999987544 445566555554
No 8
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=64.86 E-value=2.2 Score=28.77 Aligned_cols=25 Identities=28% Similarity=0.800 Sum_probs=19.6
Q ss_pred CCCcchhhc-CCChhHhhhhcccCCCCCCccccHH
Q 025496 34 KEVCPFYMV-RFCPHDLFVNTRSDLGPCPRIHDQK 67 (252)
Q Consensus 34 ~~VCk~yL~-G~CPhdLF~nTK~DlG~C~kiHde~ 67 (252)
-.||+-|=+ |+||+.+ .||.+||-.
T Consensus 20 ~~iC~~FSayGwCp~G~---------~Cp~SHDiD 45 (50)
T 2fc6_A 20 TSICDNFSAYGWCPLGP---------QCPQSHDIS 45 (50)
T ss_dssp SCBCSHHHHTCCCTTGG---------GCSSBCCCC
T ss_pred cchhhhccccccCCCCC---------CCCccccCC
Confidence 358988876 9999764 699999854
No 9
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=64.21 E-value=28 Score=26.96 Aligned_cols=65 Identities=18% Similarity=0.290 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhccccccccchhhhcccChh
Q 025496 132 SVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCEICGSFLVANDAA 208 (252)
Q Consensus 132 ~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ek~~l~~~~~~~~~~~~~~~qkl~VCdVCGA~Ls~~D~d 208 (252)
....++|+-|...|..+ ..++.+-|...+..+..+-.+ ..+ -.+..-+-.+|.-||.+|+-+-|-
T Consensus 17 ~ia~~Ri~~L~~~A~~~-~~~~p~lSr~Y~~~~~~is~k-~~i----------rlp~~~KR~~Ck~C~s~LiPG~t~ 81 (120)
T 1x0t_A 17 KIAIERIDTLFTLAERV-ARYSPDLAKRYVELALEIQKK-AKV----------KIPRKWKRRYCKRCHTFLIPGVNA 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHH-HTC----------CCCTTTTTSBCTTTCCBCCBTTTE
T ss_pred HHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHH-hcc----------CCCHHHHHHhccCCCCEeECCCce
Confidence 34577899999999998 678888887777776655321 111 122445778999999999987664
No 10
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=62.93 E-value=2.8 Score=31.59 Aligned_cols=15 Identities=40% Similarity=1.225 Sum_probs=10.9
Q ss_pred CCCCcchhhcCCChh
Q 025496 33 DKEVCPFYMVRFCPH 47 (252)
Q Consensus 33 D~~VCk~yL~G~CPh 47 (252)
-..||++|+-|.|.+
T Consensus 12 k~~lC~~f~~G~C~~ 26 (98)
T 2cqe_A 12 KRELCKFYITGFCAR 26 (98)
T ss_dssp CCSBCTTTTTTCCSC
T ss_pred CCccCcccccCcCCC
Confidence 345788888888855
No 11
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=62.23 E-value=4.7 Score=30.04 Aligned_cols=18 Identities=28% Similarity=0.649 Sum_probs=12.5
Q ss_pred CCCCCCcchhhcCCChhH
Q 025496 31 WDDKEVCPFYMVRFCPHD 48 (252)
Q Consensus 31 f~D~~VCk~yL~G~CPhd 48 (252)
|.--.||+.||-|.|...
T Consensus 14 ~~~~~VCrdFlrG~C~r~ 31 (89)
T 2rpp_A 14 WLTLEVCRQFQRGTCSRS 31 (89)
T ss_dssp SSEECBCHHHHHTCCCCC
T ss_pred cchhhhchHHhcCCCCCC
Confidence 444458888888888544
No 12
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.63 E-value=4.5 Score=30.54 Aligned_cols=13 Identities=31% Similarity=0.618 Sum_probs=9.4
Q ss_pred CCcchhhcCCChh
Q 025496 35 EVCPFYMVRFCPH 47 (252)
Q Consensus 35 ~VCk~yL~G~CPh 47 (252)
.||++||-|.|..
T Consensus 21 ~VCr~FlrG~C~r 33 (98)
T 2e5s_A 21 EVCREFQRGNCAR 33 (98)
T ss_dssp EBCSHHHHTCCSS
T ss_pred hhhHHHhcCcCCC
Confidence 5788887777754
No 13
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=58.43 E-value=3.2 Score=30.47 Aligned_cols=15 Identities=13% Similarity=0.251 Sum_probs=9.3
Q ss_pred CCCCCccccHHHHHH
Q 025496 57 LGPCPRIHDQKLKES 71 (252)
Q Consensus 57 lG~C~kiHde~lk~~ 71 (252)
-|.|+-.|.+..-..
T Consensus 56 r~~C~y~H~~~~l~~ 70 (83)
T 3d2n_A 56 RENCKYLHPPPHLKT 70 (83)
T ss_dssp CSSCSSCCCCHHHHH
T ss_pred CCCcceeCChHHHHH
Confidence 357888887644333
No 14
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=57.47 E-value=4.5 Score=28.41 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=16.7
Q ss_pred CCCcchhhcCCChhHhhhhcccCCC--CCCccccH
Q 025496 34 KEVCPFYMVRFCPHDLFVNTRSDLG--PCPRIHDQ 66 (252)
Q Consensus 34 ~~VCk~yL~G~CPhdLF~nTK~DlG--~C~kiHde 66 (252)
-.||++|+-|.|. -| .|+-.|++
T Consensus 6 ~~vC~~f~~G~C~----------rg~~~C~f~H~~ 30 (70)
T 3d2q_A 6 LEVCREYQRGNCN----------RGENDCRFAHPA 30 (70)
T ss_dssp EEBCHHHHTTCCS----------SCTTTCSSBCCC
T ss_pred chhCHHHhcCCCC----------CCCCCCCCccCc
Confidence 4599999999993 34 47777754
No 15
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4
Probab=54.48 E-value=3.3 Score=32.39 Aligned_cols=35 Identities=20% Similarity=0.612 Sum_probs=25.8
Q ss_pred cccccccchhhhcccChhhHhhhhhcchhhhcHHHHHHHH
Q 025496 191 KMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFI 230 (252)
Q Consensus 191 kl~VCdVCGA~Ls~~D~d~Rl~dH~~GK~H~Gy~kIR~~l 230 (252)
+-..|.+|.+.+. +..-+..|+.||.|. .++|..+
T Consensus 31 ~~~~C~~C~v~~~---S~s~~~~H~~gkkH~--~~v~~~~ 65 (127)
T 1zu1_A 31 SDTQCKVCSAVLI---SESQKLAHYQSRKHA--NKVRRYM 65 (127)
T ss_dssp CSSEETTTTEECC---SHHHHHHHHHCHHHH--HHHHHHH
T ss_pred CCCcCcCCCCEeC---CHHHHHHHHCcHHHH--HHHHHHh
Confidence 4478999998543 667788999999998 3444433
No 16
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=53.69 E-value=9.9 Score=24.28 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Q 025496 136 EKIKNLLEQVETLGEAGKVDEAEALMRKVEI 166 (252)
Q Consensus 136 ~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~ 166 (252)
..|..+-+++..+..+|+++.+-.+-.+++.
T Consensus 8 d~I~aiEQqiyvA~seGd~etv~~Le~QL~~ 38 (40)
T 1gp8_A 8 ANKDAIRKQMDAAASKGDVETYRKLKAKLKG 38 (40)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 4566666888899999999998777555543
No 17
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=53.36 E-value=4 Score=26.62 Aligned_cols=28 Identities=25% Similarity=0.565 Sum_probs=19.6
Q ss_pred ccccccccchhhhcccChhhHhhhhhcc
Q 025496 190 KKMALCEICGSFLVANDAAERTQSHISG 217 (252)
Q Consensus 190 qkl~VCdVCGA~Ls~~D~d~Rl~dH~~G 217 (252)
-..+||+-||..+++.---..|..|-.|
T Consensus 15 ~~YRvC~~CgkPi~lsAIvdHLenhC~~ 42 (44)
T 2lo3_A 15 IQYRVCEKCGKPLALTAIVDHLENHCAG 42 (44)
T ss_dssp CCEEECTTTCCEEETTTHHHHHHHCCTT
T ss_pred ccchhhcccCCcchHHHHHHHHHHHhcc
Confidence 3569999999999886544455555444
No 18
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4
Probab=50.54 E-value=7.1 Score=30.40 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=25.1
Q ss_pred cccccccchhhhcccChhhHhhhhhcchhhhcHHH
Q 025496 191 KMALCEICGSFLVANDAAERTQSHISGKQHIGYGM 225 (252)
Q Consensus 191 kl~VCdVCGA~Ls~~D~d~Rl~dH~~GK~H~Gy~k 225 (252)
...-|++|... ..+..=+..|+.||.|.-=++
T Consensus 92 ~~~~C~~C~~~---f~s~~~~~~H~~gk~H~~~~~ 123 (127)
T 1zu1_A 92 RSKCCPVCNMT---FSSPVVAESHYIGKTHIKNLR 123 (127)
T ss_dssp TTTEETTTTEE---CSSHHHHHHHHTSHHHHHHHH
T ss_pred CCeEcCCCCCE---eCCHHHHHHHHCCHHHHHHHH
Confidence 44679999975 447788999999999975443
No 19
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=49.81 E-value=41 Score=27.50 Aligned_cols=12 Identities=50% Similarity=1.043 Sum_probs=8.3
Q ss_pred ccccccccchhh
Q 025496 190 KKMALCEICGSF 201 (252)
Q Consensus 190 qkl~VCdVCGA~ 201 (252)
.+..||.|||-.
T Consensus 136 ~~~~~C~~CG~i 147 (170)
T 3pwf_A 136 KKVYICPICGYT 147 (170)
T ss_dssp SCEEECTTTCCE
T ss_pred CCeeEeCCCCCe
Confidence 356778888854
No 20
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=49.70 E-value=71 Score=23.09 Aligned_cols=53 Identities=11% Similarity=0.192 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh--------cCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025496 126 EKSEQLSVLEEKIKNLLEQVETLGE--------AGKVDEAEALMRKVEILNVEKTTLTQQS 178 (252)
Q Consensus 126 ~~~~~i~~l~~~I~~ll~~aE~LGe--------eG~VdeA~~~~~~~e~Lk~ek~~l~~~~ 178 (252)
..++++..|..+|..+-.++..|-. ..+.+..+.++.+.+.+..+.+.+....
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erW 79 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERW 79 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666555544332 2467778888888888887777776554
No 21
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=49.32 E-value=67 Score=29.77 Aligned_cols=49 Identities=14% Similarity=0.197 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025496 130 QLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQS 178 (252)
Q Consensus 130 ~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ek~~l~~~~ 178 (252)
.|.+++.+|..+..+.+.+...++.+.|..+..+.+.|+.+.+.++..+
T Consensus 395 ~i~~l~~~i~~l~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~ 443 (468)
T 3pxg_A 395 NLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSW 443 (468)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777777778888888999999999999999999998888766
No 22
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=48.87 E-value=40 Score=28.29 Aligned_cols=12 Identities=50% Similarity=1.129 Sum_probs=8.8
Q ss_pred ccccccccchhh
Q 025496 190 KKMALCEICGSF 201 (252)
Q Consensus 190 qkl~VCdVCGA~ 201 (252)
....||.|||-.
T Consensus 169 ~~~~~C~~CG~i 180 (202)
T 1yuz_A 169 DKFHLCPICGYI 180 (202)
T ss_dssp CCEEECSSSCCE
T ss_pred CcEEEECCCCCE
Confidence 356889999944
No 23
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=48.41 E-value=27 Score=27.24 Aligned_cols=64 Identities=19% Similarity=0.293 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhccccccccchhhhcccChh
Q 025496 133 VLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCEICGSFLVANDAA 208 (252)
Q Consensus 133 ~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ek~~l~~~~~~~~~~~~~~~qkl~VCdVCGA~Ls~~D~d 208 (252)
...++|+-|...|..+ ..++.+-|...+..+..+-.+ ..+ -.+..-+-.+|.-||.+|+-+-|-
T Consensus 13 ia~~Ri~~L~~~A~~~-~~~~p~LSr~Y~~~~~~Is~K-~~i----------rlp~~~KR~~Ck~C~s~LIPG~t~ 76 (123)
T 2k3r_A 13 IAKERIDILFSLAERV-FPYSPELAKRYVELALLVQQK-AKV----------KIPRKWKRRYCKKCHAFLVPGINA 76 (123)
T ss_dssp --CHHHHHHHHHHHHH-HHHCHHHHHHHHHHHHHHHHH-HTC----------CCSSTTTTSBCTTTCCBCCBTTTE
T ss_pred HHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHH-hcc----------CCCHHHHHHhccCCCCEeECCCce
Confidence 4467888888988888 556777777776666554211 111 122445678999999999987654
No 24
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=47.69 E-value=82 Score=23.23 Aligned_cols=71 Identities=23% Similarity=0.332 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccCC--CCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Q 025496 92 FCEKLVMDLDRRVRRGRERLSQEVEP--APPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEI 166 (252)
Q Consensus 92 ~L~~~i~d~drkI~~~k~RL~~~~~~--~~~~~~~~~~~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~ 166 (252)
..-..|++.|.+.......+.+.... ......+++ .+...+ .+|...+.++..+|++ +|.-|.....-|++
T Consensus 22 r~~~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~--~r~~~l-~~I~~~~~~~~~l~dE-Kv~lA~~~~dlvdk 94 (104)
T 4afl_A 22 RNFQLMRDLDQRTEDLKAEIDKLATEYMSSARSLSSE--EKLALL-KQIQEAYGKCKEFGDD-KVQLAMQTYEMVDK 94 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCCHH--HHHHHH-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChh--hhHHHH-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 34456777777777666665432100 001112222 233444 7888999999988854 34445544444444
No 25
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=47.00 E-value=69 Score=27.39 Aligned_cols=94 Identities=16% Similarity=0.144 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhccccccccchhhhcccChh
Q 025496 129 EQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCEICGSFLVANDAA 208 (252)
Q Consensus 129 ~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ek~~l~~~~~~~~~~~~~~~qkl~VCdVCGA~Ls~~D~d 208 (252)
+++..+..+|..+-++++++- +.-+.+.++.+.++.--.+-... ..+.-+-.++..+|.+.|+=
T Consensus 59 ~e~~~l~~~l~~l~~e~~el~-----d~~lR~~AEfeN~RkR~~rE~e~-----------~~~~a~e~~~~~LLpVlDnl 122 (213)
T 4ani_A 59 EELAAAKAQIAELEAKLSEME-----HRYLRLYADFENFRRRTRQEMEA-----------AEKYRAQSLASDLLPVLDNF 122 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhHHHHHH
Confidence 567778888888888887775 66677777777775322211111 12234456788999999999
Q ss_pred hHhhhhhc-----chhhhcHHHHHHHHHH-HHhhcc
Q 025496 209 ERTQSHIS-----GKQHIGYGMVRDFITE-YKVCQL 238 (252)
Q Consensus 209 ~Rl~dH~~-----GK~H~Gy~kIR~~l~e-L~~~~~ 238 (252)
.|--.|.. ..++-|+..|...+.. |...++
T Consensus 123 erAl~~~~~~~~~~~l~eGvemi~k~l~~~L~k~Gv 158 (213)
T 4ani_A 123 ERALKIETDNEQAKSILQGMEMVYRSLVDALKKEGV 158 (213)
T ss_dssp HHHHSCCSCCSTHHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred HHHHHhccccccHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 99666543 2467788888666655 444443
No 26
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=46.77 E-value=82 Score=23.01 Aligned_cols=16 Identities=19% Similarity=0.194 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 025496 160 LMRKVEILNVEKTTLT 175 (252)
Q Consensus 160 ~~~~~e~Lk~ek~~l~ 175 (252)
+-.+.++|+.++..-.
T Consensus 53 L~~en~qLk~E~~~wq 68 (81)
T 2jee_A 53 LERENNHLKEQQNGWQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555544333
No 27
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=45.42 E-value=6.7 Score=26.85 Aligned_cols=31 Identities=32% Similarity=0.428 Sum_probs=24.3
Q ss_pred cccccchhhhcccChhhHhhhhhcchhhhcHHHH
Q 025496 193 ALCEICGSFLVANDAAERTQSHISGKQHIGYGMV 226 (252)
Q Consensus 193 ~VCdVCGA~Ls~~D~d~Rl~dH~~GK~H~Gy~kI 226 (252)
.-|+.||.- .++---+.||+--++|++.+++
T Consensus 14 ~eC~lC~vk---Ys~r~slqDHIFs~qHI~~vk~ 44 (55)
T 2yrk_A 14 PECTLCGVK---YSARLSIRDHIFSKQHISKVRE 44 (55)
T ss_dssp SCCTTTTCC---CCSSSCHHHHHTSHHHHHHHHH
T ss_pred ccccccCcc---cccccchhhhhccHHHHHHHHH
Confidence 579999953 4454558999999999987763
No 28
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=44.66 E-value=68 Score=21.46 Aligned_cols=42 Identities=24% Similarity=0.335 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 025496 134 LEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLT 175 (252)
Q Consensus 134 l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ek~~l~ 175 (252)
|.++|..+-.-++++-..|+.|+..-+-.-+..|+.+...++
T Consensus 7 L~EQ~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~ei~~~~ 48 (51)
T 1yzm_A 7 LLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555677778889999998888777777777766554
No 29
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=43.35 E-value=8.4 Score=27.25 Aligned_cols=28 Identities=21% Similarity=0.611 Sum_probs=19.7
Q ss_pred CCCCCCCcchhhcCCChhHhhhhcccCCCCCCccccH
Q 025496 30 KWDDKEVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQ 66 (252)
Q Consensus 30 ~f~D~~VCk~yL~G~CPhdLF~nTK~DlG~C~kiHde 66 (252)
.+.-..||++||-|.|... | .|+-.|+.
T Consensus 12 ~~~k~~vCk~fl~G~C~~G-------~--~C~fsH~~ 39 (72)
T 2rhk_C 12 SGEKTVVCKHWLRGLCKKG-------D--QCEFLHEY 39 (72)
T ss_dssp SCCCCSBCHHHHTTCCCCG-------G--GSSSBCSC
T ss_pred CCCcCeeCHHHhcCCCCCC-------C--CCCCcccc
Confidence 4556779999999999531 2 37777763
No 30
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=43.24 E-value=1.5e+02 Score=25.16 Aligned_cols=65 Identities=14% Similarity=0.210 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHH
Q 025496 95 KLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTL 174 (252)
Q Consensus 95 ~~i~d~drkI~~~k~RL~~~~~~~~~~~~~~~~~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ek~~l 174 (252)
..++++.|.|+++...|. +.+..|+..=..+..++-.+...|+++-|-.+..++=+.+.....+
T Consensus 10 e~~r~~~r~Lr~~~R~Ld----------------R~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl 73 (218)
T 3frt_A 10 ELVNEWSLKIRKEMRVVD----------------RQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKL 73 (218)
T ss_dssp HHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 446666677766665553 3344444444555667777888999998888888777777766665
Q ss_pred H
Q 025496 175 T 175 (252)
Q Consensus 175 ~ 175 (252)
.
T Consensus 74 ~ 74 (218)
T 3frt_A 74 Y 74 (218)
T ss_dssp H
T ss_pred H
Confidence 4
No 31
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=42.89 E-value=8.2 Score=27.00 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=19.6
Q ss_pred CCcchhhcCCChhHhhhhcccCCCCCCccccHHH
Q 025496 35 EVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQKL 68 (252)
Q Consensus 35 ~VCk~yL~G~CPhdLF~nTK~DlG~C~kiHde~l 68 (252)
.||++||=|.|++ |.|+-.|.+..
T Consensus 43 ~vC~~flkG~C~r----------~~C~y~H~~~~ 66 (70)
T 3d2q_A 43 TVCMDYIKGRCSR----------EKCKYFHPPAH 66 (70)
T ss_dssp EBCHHHHTTCCCC----------TTCCSBCCCHH
T ss_pred eeccccCcCCCCC----------CCcCeeCCHHH
Confidence 5899999999954 68999998643
No 32
>2h8b_A Insulin-like 3; insulin/relaxin suparfamily fold, hormone/growth factor complex; NMR {Synthetic} PDB: 2k6t_A 2k6u_A
Probab=42.42 E-value=5.5 Score=23.06 Aligned_cols=9 Identities=22% Similarity=0.663 Sum_probs=7.2
Q ss_pred hhhcCCChh
Q 025496 39 FYMVRFCPH 47 (252)
Q Consensus 39 ~yL~G~CPh 47 (252)
--|+++|||
T Consensus 18 QDLL~lCPh 26 (26)
T 2h8b_A 18 QDLLTLCPY 26 (26)
T ss_dssp HHHHTTCCC
T ss_pred HHHHhhCCC
Confidence 358899998
No 33
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=42.36 E-value=72 Score=21.09 Aligned_cols=39 Identities=28% Similarity=0.379 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHH
Q 025496 134 LEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKT 172 (252)
Q Consensus 134 l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ek~ 172 (252)
|.++|..+-.-++.+...|+.||.-.+-.-+.+|..|..
T Consensus 6 L~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~~ 44 (48)
T 3v1a_A 6 LAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEYF 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 344555555666778888999998888888887776654
No 34
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=42.30 E-value=74 Score=24.97 Aligned_cols=49 Identities=16% Similarity=0.265 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHh
Q 025496 128 SEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQ 176 (252)
Q Consensus 128 ~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ek~~l~~ 176 (252)
..+|..|+.+++..-.+...+-..|+.+---.+..+++.|..++..+..
T Consensus 9 K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~ 57 (123)
T 2lf0_A 9 KNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLRE 57 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777777777777666777777777766666654
No 35
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=41.43 E-value=1e+02 Score=22.64 Aligned_cols=86 Identities=8% Similarity=0.059 Sum_probs=44.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHH
Q 025496 82 VPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALM 161 (252)
Q Consensus 82 ~~gYE~e~~~~L~~~i~d~drkI~~~k~RL~~~~~~~~~~~~~~~~~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~ 161 (252)
+.+||.+|-... .++-++|.+.. ....+ .-.....++...+.+..+-|..|--++..+| |....=-.++
T Consensus 3 F~~YE~df~~~~----~~i~~~l~~~~----~~~ge-~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~--~p~~~R~~~~ 71 (97)
T 3onj_A 3 LISYESDFKTTL----EQAKASLAEAP----SQPLS-QRNTTLKHVEQQQDELFDLLDQMDVEVNNSI--GDASERATYK 71 (97)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHGG----GSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHh----ccChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence 458999886554 45555554432 10000 0000122334455555555555555555554 2333334677
Q ss_pred HHHHHHHHHHHH-HHhhh
Q 025496 162 RKVEILNVEKTT-LTQQS 178 (252)
Q Consensus 162 ~~~e~Lk~ek~~-l~~~~ 178 (252)
.++...|.+... +...+
T Consensus 72 ~klr~Yk~dl~~~lk~~l 89 (97)
T 3onj_A 72 AKLREWKKTIQSDIKRPL 89 (97)
T ss_dssp HHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 788888777777 66555
No 36
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=41.18 E-value=87 Score=22.23 Aligned_cols=43 Identities=23% Similarity=0.313 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 025496 133 VLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLT 175 (252)
Q Consensus 133 ~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ek~~l~ 175 (252)
=|.++|..+-.-++++-..|+.||..-|-.-+.+|+.+...++
T Consensus 24 PL~EQ~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~ei~~~q 66 (69)
T 1z0k_B 24 PLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 4555566666777788888999988777777777776665543
No 37
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=39.58 E-value=8.2 Score=23.82 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=17.7
Q ss_pred cccccchhhhcccChhhHhhhhhc
Q 025496 193 ALCEICGSFLVANDAAERTQSHIS 216 (252)
Q Consensus 193 ~VCdVCGA~Ls~~D~d~Rl~dH~~ 216 (252)
..|++|.+.|. +...|..||.
T Consensus 6 FiCP~C~~~l~---s~~~L~~Hye 26 (34)
T 3mjh_B 6 FICPQCMKSLG---SADELFKHYE 26 (34)
T ss_dssp EECTTTCCEES---SHHHHHHHHH
T ss_pred cCCcHHHHHcC---CHHHHHHHHH
Confidence 78999998866 6688999984
No 38
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=39.17 E-value=1.2e+02 Score=22.59 Aligned_cols=20 Identities=15% Similarity=0.069 Sum_probs=13.0
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 025496 82 VPKFEAELAQFCEKLVMDLD 101 (252)
Q Consensus 82 ~~gYE~e~~~~L~~~i~d~d 101 (252)
+.+||.+|-..+..+-.-|+
T Consensus 17 Fe~YE~df~~l~~~i~~kl~ 36 (102)
T 2qyw_A 17 FEKLHEIFRGLLEDLQGVPE 36 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35899988876655544444
No 39
>1skh_A Major prion protein 2; coil-helix-coil, unknown function; NMR {Bos taurus}
Probab=38.88 E-value=5.1 Score=24.14 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.2
Q ss_pred hcCCChhHhhhhcccCCCCCCc
Q 025496 41 MVRFCPHDLFVNTRSDLGPCPR 62 (252)
Q Consensus 41 L~G~CPhdLF~nTK~DlG~C~k 62 (252)
.+||+---||.-|=+|+|-|.|
T Consensus 5 ~~~cwilvLfva~wsdvglcKK 26 (30)
T 1skh_A 5 KIGSWILVLFVAMWSDVGLCKK 26 (30)
T ss_dssp TTTTHHHHHHHHHHHHHTTSSS
T ss_pred cccHHHHHHHHHHHhHHHHhhc
Confidence 4788999999999999999987
No 40
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=38.10 E-value=47 Score=31.36 Aligned_cols=46 Identities=11% Similarity=0.200 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025496 131 LSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQS 178 (252)
Q Consensus 131 i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ek~~l~~~~ 178 (252)
+..|..+.+.+-+++-++...| +++..+++++..|+.+.+.++++.
T Consensus 47 ~~~l~~~~n~~sk~i~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~ 92 (455)
T 2dq0_A 47 INRLRHERNKIAVEIGKRRKKG--EPVDELLAKSREIVKRIGELENEV 92 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSC--CCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccc--ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333344 244556666666666666665443
No 41
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=37.89 E-value=94 Score=29.63 Aligned_cols=94 Identities=7% Similarity=0.000 Sum_probs=48.1
Q ss_pred hHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhccCC-CCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHH
Q 025496 84 KFEAEL---AQFCEKLVMDLDRRVRRGRERLSQEVEP-APPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEA 159 (252)
Q Consensus 84 gYE~e~---~~~L~~~i~d~drkI~~~k~RL~~~~~~-~~~~~~~~~~~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~ 159 (252)
.|+..+ ++.|...+.++..+...++.-+..-+.. ........++...|.++++.|+.....+++.- ...+..+..
T Consensus 93 k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~-~~~~~~~i~ 171 (464)
T 1m1j_B 93 KQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNL-DNNIPSSLR 171 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTHHHHHHH
T ss_pred HhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHH-hccchhHHH
Confidence 456544 7888888888888777666543210000 00001122333455555555555555554432 222333333
Q ss_pred H-HHHHHHHHHHHHHHHhhh
Q 025496 160 L-MRKVEILNVEKTTLTQQS 178 (252)
Q Consensus 160 ~-~~~~e~Lk~ek~~l~~~~ 178 (252)
+ -..++.++.++..|+..+
T Consensus 172 ~L~~~~~~l~~ki~~l~~~~ 191 (464)
T 1m1j_B 172 VLRAVIDSLHKKIQKLENAI 191 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 3 355677777777776554
No 42
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=37.72 E-value=9.1 Score=24.30 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=19.3
Q ss_pred cccccccchhhhcccChhhHhhhhhc
Q 025496 191 KMALCEICGSFLVANDAAERTQSHIS 216 (252)
Q Consensus 191 kl~VCdVCGA~Ls~~D~d~Rl~dH~~ 216 (252)
...+|+-||..+.+.+-+.-.+=||.
T Consensus 8 ~~~~C~~C~~~i~~~~~~EH~D~H~A 33 (39)
T 2i5o_A 8 DQVPCEKCGSLVPVWDMPEHMDYHFA 33 (39)
T ss_dssp CEEECTTTCCEEEGGGHHHHHHHHHH
T ss_pred CCcccccccCcCCcccccchhhHHHH
Confidence 45789999999988766665665553
No 43
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=35.81 E-value=1.7e+02 Score=23.90 Aligned_cols=11 Identities=27% Similarity=0.555 Sum_probs=7.6
Q ss_pred cccccccchhh
Q 025496 191 KMALCEICGSF 201 (252)
Q Consensus 191 kl~VCdVCGA~ 201 (252)
...+|.|||-.
T Consensus 154 ~~~~C~~CG~~ 164 (191)
T 1lko_A 154 TKWRCRNCGYV 164 (191)
T ss_dssp EEEEETTTCCE
T ss_pred ceEEECCCCCE
Confidence 35788888843
No 44
>2r6a_C DNAG primase, helicase binding domain, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_G 1z8s_A*
Probab=35.65 E-value=94 Score=23.10 Aligned_cols=38 Identities=5% Similarity=-0.130 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHH
Q 025496 134 LEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEK 171 (252)
Q Consensus 134 l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ek 171 (252)
+..++..+..++.+++..|++++...+..++..++.++
T Consensus 103 ~~r~l~~~~~~i~~~~~~~d~~~~l~~~~el~~l~~~l 140 (143)
T 2r6a_C 103 KWLMLKVKEQEKTEAERRKDFLTAARIAKEMIEMKKML 140 (143)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 44556666677777778999999999888877776543
No 45
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4
Probab=35.56 E-value=13 Score=29.37 Aligned_cols=30 Identities=17% Similarity=0.493 Sum_probs=24.7
Q ss_pred ccccccccchhhhcccChhhHhhhhhcchhhhc
Q 025496 190 KKMALCEICGSFLVANDAAERTQSHISGKQHIG 222 (252)
Q Consensus 190 qkl~VCdVCGA~Ls~~D~d~Rl~dH~~GK~H~G 222 (252)
.+...|.+||.+.+ +..-|..|+.+|.|..
T Consensus 48 ekpfyC~~C~K~F~---~~~~L~~H~rsK~HKr 77 (124)
T 1zr9_A 48 GGLHRCLACARYFI---DSTNLKTHFRSKDHKK 77 (124)
T ss_dssp GGCSEETTTTEECS---SHHHHHHHTTCHHHHH
T ss_pred CcceEcccCcchhC---CHHHHHHHHhhhhhhH
Confidence 45699999998855 5577999999999954
No 46
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=34.84 E-value=7.8 Score=29.44 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=17.5
Q ss_pred ccccccccchhhhcccChhhHhhhhhc
Q 025496 190 KKMALCEICGSFLVANDAAERTQSHIS 216 (252)
Q Consensus 190 qkl~VCdVCGA~Ls~~D~d~Rl~dH~~ 216 (252)
-.-+||.-||..+++. =+.||+.
T Consensus 73 ~~YRvCn~CGkPI~l~----AIvDHLe 95 (96)
T 3mhs_E 73 IQYRVCEKCGKPLALT----AIVDHLE 95 (96)
T ss_dssp CCCEEETTTCCEECGG----GTTTCCC
T ss_pred ccchhhhccCCceeHH----HHHHHhh
Confidence 3569999999999874 4666763
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=34.41 E-value=2.9e+02 Score=25.74 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 025496 157 AEALMRKVEILNVEKTTLTQQS 178 (252)
Q Consensus 157 A~~~~~~~e~Lk~ek~~l~~~~ 178 (252)
..+.+++.+.++.++.+++...
T Consensus 532 ~~~~~~~~~~~~~~~~~le~~~ 553 (597)
T 3oja_B 532 ADAKQKETEDLEQENIALEKQL 553 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcchhhHHhhhHHHHHHH
Confidence 3444555555555555555443
No 48
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=34.39 E-value=92 Score=23.31 Aligned_cols=45 Identities=13% Similarity=0.289 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 025496 87 AELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQV 145 (252)
Q Consensus 87 ~e~~~~L~~~i~d~drkI~~~k~RL~~~~~~~~~~~~~~~~~~~i~~l~~~I~~ll~~a 145 (252)
.+...+-.++|.++-++|.+-+ +. ...+ -+|.+|+.+|++|+.+-
T Consensus 24 ~~AekWR~qvikEIs~Kv~~Iq-----n~-------~L~E--~~IRdLNDEINkL~rEK 68 (92)
T 1x4t_A 24 PKAEKWRRQIIGEISKKVAQIQ-----NA-------GLGE--FRIRDLNDEINKLLREK 68 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----HC-------CSCH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-----CC-------CCCH--HHHHHHHHHHHHHHHHH
Confidence 4556677788889888887753 21 1112 58999999999999864
No 49
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=33.73 E-value=20 Score=18.11 Aligned_cols=25 Identities=20% Similarity=0.398 Sum_probs=15.0
Q ss_pred cccccchhhhcccChhhHhhhhhcchhhhc
Q 025496 193 ALCEICGSFLVANDAAERTQSHISGKQHIG 222 (252)
Q Consensus 193 ~VCdVCGA~Ls~~D~d~Rl~dH~~GK~H~G 222 (252)
..|++||.-.. ...-|..|. +.|.|
T Consensus 2 ~~C~~C~k~f~---~~~~l~~H~--~~h~~ 26 (27)
T 1znf_A 2 YKCGLCERSFV---EKSALSRHQ--RVHKN 26 (27)
T ss_dssp CBCSSSCCBCS---SHHHHHHHG--GGTCC
T ss_pred ccCCCCCCcCC---CHHHHHHHH--HHcCC
Confidence 47999997544 334466665 34543
No 50
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.58 E-value=19 Score=19.83 Aligned_cols=23 Identities=30% Similarity=0.618 Sum_probs=15.3
Q ss_pred ccccccccchhhhcccChhhHhhhhh
Q 025496 190 KKMALCEICGSFLVANDAAERTQSHI 215 (252)
Q Consensus 190 qkl~VCdVCGA~Ls~~D~d~Rl~dH~ 215 (252)
.+...|++||.-.. ....|..|.
T Consensus 7 ~~~~~C~~C~k~f~---~~~~l~~H~ 29 (36)
T 2elr_A 7 GKTHLCDMCGKKFK---SKGTLKSHK 29 (36)
T ss_dssp CSSCBCTTTCCBCS---SHHHHHHHH
T ss_pred CCCeecCcCCCCcC---chHHHHHHH
Confidence 45689999997544 334566664
No 51
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=33.24 E-value=1.6e+02 Score=22.56 Aligned_cols=51 Identities=18% Similarity=0.181 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHH
Q 025496 95 KLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRK 163 (252)
Q Consensus 95 ~~i~d~drkI~~~k~RL~~~~~~~~~~~~~~~~~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~ 163 (252)
+-++|++||+.-=-.+|.... ..+....++ .++=++-..|+.+.|..+...
T Consensus 36 ~~~~D~~KRL~~LfdkLn~~~-------Ls~~v~~~L-----------~~l~~al~~~dy~~A~~ih~~ 86 (118)
T 2yru_A 36 QVCDDISRRLALLREQWAGGK-------LSIPVKKRM-----------ALLVQELLHHQWDAADDIHRS 86 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-------SCHHHHHHH-----------HHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCC-------CCHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHH
Confidence 336777777776666664321 122222233 333344556888888776443
No 52
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=32.95 E-value=73 Score=30.49 Aligned_cols=41 Identities=22% Similarity=0.389 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025496 129 EQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQS 178 (252)
Q Consensus 129 ~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ek~~l~~~~ 178 (252)
.+...++.+|+.+.+ .|+ ++..+++++..|+.+.+.++.+.
T Consensus 54 ~~rn~~sk~i~~~k~-------~~~--~~~~l~~~~~~l~~~i~~le~~~ 94 (485)
T 3qne_A 54 KKLNSVQKEIGKRFK-------AKE--DAKDLIAEKEKLSNEKKEIIEKE 94 (485)
T ss_dssp HHHHHHHHHHHHHHH-------TTC--CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-------Ccc--cHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556655432 332 34455666666666665555443
No 53
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=32.17 E-value=1.2e+02 Score=20.80 Aligned_cols=43 Identities=21% Similarity=0.309 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 025496 133 VLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLT 175 (252)
Q Consensus 133 ~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ek~~l~ 175 (252)
-|.++|..+-.-+.++-..|+.|+..-+-.-+..|+.+...++
T Consensus 13 pL~EQi~~I~~yI~qAk~~~R~DEV~~Le~NLrEL~~ei~~~~ 55 (59)
T 1z0j_B 13 LLLQQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHTLAKQK 55 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666777888889999998888877777777766554
No 54
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=31.89 E-value=18 Score=31.53 Aligned_cols=27 Identities=19% Similarity=0.383 Sum_probs=17.7
Q ss_pred CCcchhhcCCChhHhhhhcccCCCCCCccccH
Q 025496 35 EVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQ 66 (252)
Q Consensus 35 ~VCk~yL~G~CPhdLF~nTK~DlG~C~kiHde 66 (252)
-.||+||.|-|++... .-..|...||-
T Consensus 90 HLCK~~l~G~C~~~~~-----~~~~Ck~SHdi 116 (229)
T 3u9g_A 90 HLCKLNLLGRCHYAQS-----QRNLCKYSHDV 116 (229)
T ss_dssp CCCHHHHTTCCGGGTC-----CSSCCSSCSCT
T ss_pred eechhhhcCcCCcccC-----CCCCccccccc
Confidence 3688899999954321 12578877763
No 55
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=31.87 E-value=1.3e+02 Score=21.85 Aligned_cols=35 Identities=14% Similarity=0.247 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH
Q 025496 129 EQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILN 168 (252)
Q Consensus 129 ~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk 168 (252)
+++-+=.++|+.+..+++.|- +.|......+.+++
T Consensus 26 ~kvL~RgekL~~L~~kt~~L~-----~~s~~F~~~A~~l~ 60 (91)
T 3hd7_A 26 DKVLERDQKLSELDDRADALQ-----AGASQFETSAAKLK 60 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred HHHHHccchHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 444455566666666666665 45555555555554
No 56
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=31.63 E-value=2e+02 Score=23.14 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 025496 139 KNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLT 175 (252)
Q Consensus 139 ~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ek~~l~ 175 (252)
..+..++..+...|+.+.|-.+..++=+.+.....+.
T Consensus 38 kk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~ 74 (179)
T 2gd5_A 38 EKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLY 74 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566668999888776666666665555554
No 57
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=31.61 E-value=11 Score=24.73 Aligned_cols=10 Identities=30% Similarity=0.707 Sum_probs=8.1
Q ss_pred cccccchhhh
Q 025496 193 ALCEICGSFL 202 (252)
Q Consensus 193 ~VCdVCGA~L 202 (252)
-+|+||||--
T Consensus 31 w~CP~Cg~~k 40 (46)
T 6rxn_A 31 WCCPVCGVSK 40 (46)
T ss_dssp CBCTTTCCBG
T ss_pred CcCcCCCCcH
Confidence 4999999853
No 58
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=31.30 E-value=90 Score=21.55 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH
Q 025496 133 VLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVE 170 (252)
Q Consensus 133 ~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~e 170 (252)
++...|..+-++..++.+.-+.++|..+-.++..|+.+
T Consensus 21 ~~~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~ 58 (63)
T 1e52_A 21 ALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 45566777888889999999999999888888887654
No 59
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=31.17 E-value=11 Score=26.29 Aligned_cols=14 Identities=21% Similarity=0.752 Sum_probs=9.0
Q ss_pred ccccccccchhhhc
Q 025496 190 KKMALCEICGSFLV 203 (252)
Q Consensus 190 qkl~VCdVCGA~Ls 203 (252)
.+|++|+.||.|-.
T Consensus 3 s~mr~C~~Cg~YTL 16 (60)
T 2aus_D 3 FRIRKCPKCGRYTL 16 (60)
T ss_dssp -CCEECTTTCCEES
T ss_pred ccceECCCCCCEEc
Confidence 35777777777643
No 60
>3u8p_A Cytochrome B562 integral fusion with enhanced GRE fluorescent protein; directed evolution, domain insertion, energy transfer, fluor quenching; HET: CRO HEM; 2.75A {Aequorea victoria}
Probab=30.38 E-value=43 Score=30.76 Aligned_cols=42 Identities=21% Similarity=0.341 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025496 133 VLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQS 178 (252)
Q Consensus 133 ~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ek~~l~~~~ 178 (252)
-|+.-|.. +..|-.|..+|+++||++.... ++.-|...-+.+
T Consensus 107 Gl~~li~q-iD~a~~la~~g~l~eAkk~a~~---~~~~r~~yHk~~ 148 (347)
T 3u8p_A 107 GFDILVGQ-IDDALKLANEGKVKEAQAAAEQ---LKTTRNAYHQKY 148 (347)
T ss_dssp HHHHHHHH-HHHHHHHHHTTCHHHHHHHHHT---HHHHHHHHHHHH
T ss_pred HHHHHHHH-hhHHHHhhhccchHHHHHHHHH---hHhHHHhhhhhc
Confidence 34444433 3567789999999999987554 444445555555
No 61
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=29.12 E-value=2.1e+02 Score=23.76 Aligned_cols=48 Identities=13% Similarity=0.098 Sum_probs=33.4
Q ss_pred cccccccchhhhcccChhhHhhhhhcc------hhhhcHHHHHHHHHH-HHhhcc
Q 025496 191 KMALCEICGSFLVANDAAERTQSHISG------KQHIGYGMVRDFITE-YKVCQL 238 (252)
Q Consensus 191 kl~VCdVCGA~Ls~~D~d~Rl~dH~~G------K~H~Gy~kIR~~l~e-L~~~~~ 238 (252)
+.-+..++..+|-+.||=.|--.|..+ .++-|+..|.+.+.. |...|+
T Consensus 85 ~~a~~~~~~~LLpv~DnlerAl~~~~~~~~~~~~l~~Gv~~~~~~l~~~L~~~Gv 139 (197)
T 1dkg_A 85 KFALEKFINELLPVIDSLDRALEVADKANPDMSAMVEDIELTLKSMLDVVRKFGV 139 (197)
T ss_dssp HTSGGGHHHHSHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTTTE
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 345667889999999999997777632 367888888655555 444443
No 62
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=28.97 E-value=2e+02 Score=23.11 Aligned_cols=31 Identities=13% Similarity=0.216 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCHHHHHHH
Q 025496 130 QLSVLEEKIKNLLEQVETLGEAGKVDEAEAL 160 (252)
Q Consensus 130 ~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~ 160 (252)
.+..+...+..++..+-.+-..++.+.|..+
T Consensus 19 ~l~~M~~~v~~~l~~a~~al~~~d~~~a~~v 49 (227)
T 1t72_A 19 QVIKMAKLVQEAIDKATEALNKQNVELAEEV 49 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 3344444444444444444445555444443
No 63
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=28.94 E-value=1.4e+02 Score=21.38 Aligned_cols=27 Identities=11% Similarity=0.154 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025496 86 EAELAQFCEKLVMDLDRRVRRGRERLS 112 (252)
Q Consensus 86 E~e~~~~L~~~i~d~drkI~~~k~RL~ 112 (252)
|+.=+.-|..-|..++.+|..-...|.
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444567788888888888888888885
No 64
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley STRU genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=28.28 E-value=2.5e+02 Score=23.01 Aligned_cols=81 Identities=10% Similarity=-0.005 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhccccccc--cchhhhcccC
Q 025496 129 EQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCE--ICGSFLVAND 206 (252)
Q Consensus 129 ~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ek~~l~~~~~~~~~~~~~~~qkl~VCd--VCGA~Ls~~D 206 (252)
..|..+...+..++..+-..-..++++.|..+...-+.+-.....+.... ... . .. ..|. .+-.++.+..
T Consensus 117 ~~l~~m~~~v~~~l~~a~~a~~~~d~~~A~~v~~~d~~iD~l~~~l~~~~-~~~--l--~~---~~~~~~~~~~~l~i~~ 188 (235)
T 1sum_B 117 EDIPAMANQTSEMLKFALRMFADVNVEKSFEVCRMDSKVDDLYEKVREEL-LLY--M--ME---SPKYVKRALLLLEIAG 188 (235)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHSCCHHHHTHHHHHHHHHHHHHHHHHHHH-HHH--H--HH---CGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--H--Hh---CCCcHHHHHHHHHHHH
Confidence 46888888999999999999999999988776654433332222232221 110 0 00 1343 3445667778
Q ss_pred hhhHhhhhhcc
Q 025496 207 AAERTQSHISG 217 (252)
Q Consensus 207 ~d~Rl~dH~~G 217 (252)
+=.|++||..-
T Consensus 189 ~lERI~Dha~n 199 (235)
T 1sum_B 189 NIEIIADYATN 199 (235)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88999999753
No 65
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=28.00 E-value=2.4e+02 Score=22.71 Aligned_cols=47 Identities=15% Similarity=0.088 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHH---HHHHHHHHHHHHh
Q 025496 130 QLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRK---VEILNVEKTTLTQ 176 (252)
Q Consensus 130 ~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~---~e~Lk~ek~~l~~ 176 (252)
-..++..+|..++.+++.+-..|++++|...+.+ +.+++.+.++++.
T Consensus 121 l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~f~~kl~~~i~~~~~ 170 (174)
T 3hho_A 121 FDTKVTAMQRHYLAQLQGQLAQSEWLAAADQIRKLKFIAKLKNEVERVED 170 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346677788888888888899999999777555 4455555555544
No 66
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=27.86 E-value=15 Score=21.01 Aligned_cols=22 Identities=14% Similarity=0.385 Sum_probs=14.1
Q ss_pred cccccccchhhhcccChhhHhhhhh
Q 025496 191 KMALCEICGSFLVANDAAERTQSHI 215 (252)
Q Consensus 191 kl~VCdVCGA~Ls~~D~d~Rl~dH~ 215 (252)
+...|++||.-.... .-|..|.
T Consensus 5 k~~~C~~C~k~f~~~---~~L~~H~ 26 (39)
T 1njq_A 5 RSYTCSFCKREFRSA---QALGGHM 26 (39)
T ss_dssp SSEECTTTCCEESSH---HHHHHHH
T ss_pred CceECCCCCcccCCH---HHHHHHH
Confidence 457899999765433 3455553
No 67
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=27.75 E-value=14 Score=25.04 Aligned_cols=10 Identities=30% Similarity=0.727 Sum_probs=8.2
Q ss_pred cccccchhhh
Q 025496 193 ALCEICGSFL 202 (252)
Q Consensus 193 ~VCdVCGA~L 202 (252)
-||++|||--
T Consensus 37 w~CP~Cg~~K 46 (54)
T 4rxn_A 37 WVCPLCGVGK 46 (54)
T ss_dssp CBCTTTCCBG
T ss_pred CcCcCCCCcH
Confidence 5999999853
No 68
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.36 E-value=22 Score=19.51 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=15.0
Q ss_pred ccccccccchhhhcccChhhHhhhhh
Q 025496 190 KKMALCEICGSFLVANDAAERTQSHI 215 (252)
Q Consensus 190 qkl~VCdVCGA~Ls~~D~d~Rl~dH~ 215 (252)
.+...|++||.-.. ...-|..|.
T Consensus 7 ~k~~~C~~C~k~f~---~~~~l~~H~ 29 (36)
T 2elt_A 7 GKPYKCPQCSYASA---IKANLNVHL 29 (36)
T ss_dssp CCSEECSSSSCEES---SHHHHHHHH
T ss_pred CCCCCCCCCCcccC---CHHHHHHHH
Confidence 45689999997543 234455664
No 69
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=27.22 E-value=2.4e+02 Score=22.54 Aligned_cols=81 Identities=20% Similarity=0.141 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccccccc--chhhhcccC
Q 025496 129 EQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCEI--CGSFLVAND 206 (252)
Q Consensus 129 ~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ek~~l~~~~~~~~~~~~~~~qkl~VCdV--CGA~Ls~~D 206 (252)
..|..+...+..++..+-..-..++++.|..+...-+.+-.....+.... .. .. +-..|.+ +-.++.+..
T Consensus 117 ~~l~~m~~~v~~~l~~a~~a~~~~d~~~a~~v~~~d~~iD~l~~~~~~~~-~~--~l-----~~~~~~~~~~~~~~~i~~ 188 (216)
T 2i0m_A 117 EQLHQMGKLSLSMLADLLVAFPLHQASKAISIAQKDEQIDQYYYALSKEI-IG--LM-----KDQETSIPNGTQYLYIIG 188 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTCHHHHHHHHHTHHHHHHHHHHHHHHH-HH--TT-----TSCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH-HH--HH-----HhCcccHHHHHHHHHHHH
Confidence 56889999999999999999999999988776654333322222222221 00 00 0124544 333667778
Q ss_pred hhhHhhhhhcc
Q 025496 207 AAERTQSHISG 217 (252)
Q Consensus 207 ~d~Rl~dH~~G 217 (252)
+=.|++||..-
T Consensus 189 ~lERI~Dha~n 199 (216)
T 2i0m_A 189 HLERFADYIAN 199 (216)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88999999753
No 70
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=26.78 E-value=19 Score=18.52 Aligned_cols=20 Identities=25% Similarity=0.607 Sum_probs=12.9
Q ss_pred cccccchhhhcccChhhHhhhhh
Q 025496 193 ALCEICGSFLVANDAAERTQSHI 215 (252)
Q Consensus 193 ~VCdVCGA~Ls~~D~d~Rl~dH~ 215 (252)
..|++||.-.+. ...|..|.
T Consensus 3 ~~C~~C~~~f~~---~~~l~~H~ 22 (29)
T 1ard_A 3 FVCEVCTRAFAR---QEHLKRHY 22 (29)
T ss_dssp CBCTTTCCBCSS---HHHHHHHH
T ss_pred eECCCCCcccCC---HHHHHHHH
Confidence 689999976443 34455554
No 71
>3r8n_T 30S ribosomal protein S20; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_T 3fih_T* 3j18_T* 2wwl_T 3oar_T 3oaq_T 3ofb_T 3ofa_T 3ofp_T 3ofx_T 3ofy_T 3ofo_T 3r8o_T 4a2i_T 4gd1_T 4gd2_T 2qal_T* 1p6g_T 1p87_T 2aw7_T ...
Probab=26.56 E-value=1.4e+02 Score=21.89 Aligned_cols=35 Identities=14% Similarity=0.240 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Q 025496 133 VLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEIL 167 (252)
Q Consensus 133 ~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~L 167 (252)
.+-..+-..+.+++++.+.|+.++|+.++..+...
T Consensus 21 ~~kS~~rT~iKk~~~Ai~~gd~~~A~~~l~~a~~~ 55 (85)
T 3r8n_T 21 SRRSMMRTFIKKVYAAIEAGDKAAAQKAFNEMQPI 55 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45566777788889999999999999998777665
No 72
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=26.24 E-value=21 Score=18.29 Aligned_cols=21 Identities=19% Similarity=0.513 Sum_probs=13.8
Q ss_pred ccccccchhhhcccChhhHhhhhh
Q 025496 192 MALCEICGSFLVANDAAERTQSHI 215 (252)
Q Consensus 192 l~VCdVCGA~Ls~~D~d~Rl~dH~ 215 (252)
...|++||.-.+ ....|..|.
T Consensus 3 ~~~C~~C~k~f~---~~~~l~~H~ 23 (28)
T 2kvf_A 3 PYSCSVCGKRFS---LKHQMETHY 23 (28)
T ss_dssp SEECSSSCCEES---CHHHHHHHH
T ss_pred CccCCCCCcccC---CHHHHHHHH
Confidence 367999997644 334566664
No 73
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=25.97 E-value=15 Score=25.51 Aligned_cols=11 Identities=36% Similarity=1.044 Sum_probs=7.1
Q ss_pred cccccccchhh
Q 025496 191 KMALCEICGSF 201 (252)
Q Consensus 191 kl~VCdVCGA~ 201 (252)
+|++|+.||.|
T Consensus 5 ~mr~C~~CgvY 15 (60)
T 2apo_B 5 RMKKCPKCGLY 15 (60)
T ss_dssp CCEECTTTCCE
T ss_pred hceeCCCCCCE
Confidence 56666666665
No 74
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=25.75 E-value=14 Score=27.50 Aligned_cols=14 Identities=57% Similarity=0.992 Sum_probs=9.5
Q ss_pred hccccccccchhhh
Q 025496 189 EKKMALCEICGSFL 202 (252)
Q Consensus 189 ~qkl~VCdVCGA~L 202 (252)
+-.|-.|++||+-|
T Consensus 5 ~~~~~~~PlCG~~L 18 (95)
T 2k5c_A 5 HHHMAKCPICGSPL 18 (95)
T ss_dssp ---CEECSSSCCEE
T ss_pred ccccccCCcCCCcc
Confidence 34678899999864
No 75
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=25.52 E-value=32 Score=18.97 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=15.1
Q ss_pred ccccccccchhhhcccChhhHhhhhh
Q 025496 190 KKMALCEICGSFLVANDAAERTQSHI 215 (252)
Q Consensus 190 qkl~VCdVCGA~Ls~~D~d~Rl~dH~ 215 (252)
.+...|++||.-.+. ..-|..|.
T Consensus 9 ~k~~~C~~C~k~f~~---~~~l~~H~ 31 (37)
T 1p7a_A 9 IKPFQCPDCDRSFSR---SDHLALHR 31 (37)
T ss_dssp SSSBCCTTTCCCBSS---HHHHHHHH
T ss_pred CCCccCCCCCcccCc---HHHHHHHH
Confidence 456899999975442 34466664
No 76
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=25.39 E-value=2.4e+02 Score=25.51 Aligned_cols=10 Identities=30% Similarity=0.554 Sum_probs=5.1
Q ss_pred ccchhhhccc
Q 025496 196 EICGSFLVAN 205 (252)
Q Consensus 196 dVCGA~Ls~~ 205 (252)
.|+|++.+..
T Consensus 312 ~lAgal~~~~ 321 (426)
T 1lrz_A 312 PISAGFFFIN 321 (426)
T ss_dssp EEEEEEEEEC
T ss_pred eeEEEEEEEE
Confidence 3566655443
No 77
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=25.18 E-value=17 Score=24.33 Aligned_cols=9 Identities=33% Similarity=1.014 Sum_probs=7.6
Q ss_pred cccccchhh
Q 025496 193 ALCEICGSF 201 (252)
Q Consensus 193 ~VCdVCGA~ 201 (252)
-+|+||||-
T Consensus 36 w~CP~Cg~~ 44 (52)
T 1yk4_A 36 WVCPLCGAP 44 (52)
T ss_dssp CBCTTTCCB
T ss_pred CcCCCCCCC
Confidence 489999985
No 78
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=25.15 E-value=23 Score=18.17 Aligned_cols=20 Identities=20% Similarity=0.428 Sum_probs=13.1
Q ss_pred cccccchhhhcccChhhHhhhhh
Q 025496 193 ALCEICGSFLVANDAAERTQSHI 215 (252)
Q Consensus 193 ~VCdVCGA~Ls~~D~d~Rl~dH~ 215 (252)
..|++||.-... ...|..|.
T Consensus 3 ~~C~~C~k~f~~---~~~l~~H~ 22 (29)
T 1rik_A 3 FACPECPKRFMR---SDHLTLHI 22 (29)
T ss_dssp EECSSSSCEESC---SHHHHHHH
T ss_pred ccCCCCCchhCC---HHHHHHHH
Confidence 579999976443 34466665
No 79
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=30.57 E-value=16 Score=18.64 Aligned_cols=11 Identities=45% Similarity=0.990 Sum_probs=8.4
Q ss_pred cccccchhhhc
Q 025496 193 ALCEICGSFLV 203 (252)
Q Consensus 193 ~VCdVCGA~Ls 203 (252)
..|++||.-.+
T Consensus 3 ~~C~~C~k~f~ 13 (26)
T 2lvu_A 3 YVCERCGKRFV 13 (26)
Confidence 67999997544
No 80
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=24.46 E-value=1.4e+02 Score=28.54 Aligned_cols=24 Identities=13% Similarity=0.088 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 025496 155 DEAEALMRKVEILNVEKTTLTQQS 178 (252)
Q Consensus 155 deA~~~~~~~e~Lk~ek~~l~~~~ 178 (252)
+++..+++++..|+.+.+.++.+.
T Consensus 116 ~~~~~l~~~~~~l~~~i~~l~~~~ 139 (501)
T 1wle_A 116 PQYQSLRARGREIRKQLTLLYPKE 139 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777665544
No 81
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=24.41 E-value=20 Score=19.63 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=15.6
Q ss_pred ccccccccchhhhcccChhhHhhhhh
Q 025496 190 KKMALCEICGSFLVANDAAERTQSHI 215 (252)
Q Consensus 190 qkl~VCdVCGA~Ls~~D~d~Rl~dH~ 215 (252)
.+..+|++||.-... ...|..|.
T Consensus 5 ~k~~~C~~C~k~f~~---~~~l~~H~ 27 (35)
T 1srk_A 5 KRPFVCRICLSAFTT---KANCARHL 27 (35)
T ss_dssp CSCEECSSSCCEESS---HHHHHHHH
T ss_pred CcCeeCCCCCcccCC---HHHHHHHH
Confidence 456899999986553 34566664
No 82
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.23 E-value=18 Score=25.81 Aligned_cols=23 Identities=30% Similarity=0.749 Sum_probs=20.4
Q ss_pred CCcchhhcCCChhHhhhhcccCCCCCCccccH
Q 025496 35 EVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQ 66 (252)
Q Consensus 35 ~VCk~yL~G~CPhdLF~nTK~DlG~C~kiHde 66 (252)
.+|++|.-|.|||. ..|..-|.+
T Consensus 21 ~LC~~~~~G~C~~G---------~~C~FAHG~ 43 (69)
T 2d9m_A 21 SICDRYMNGTCPEG---------NSCKFAHGN 43 (69)
T ss_dssp SBCHHHHHSCCSSC---------SSCSSBSSH
T ss_pred ccCcccCcCCCCCC---------CccCCcCCH
Confidence 89999999999974 589999986
No 83
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=29.81 E-value=16 Score=18.94 Aligned_cols=21 Identities=19% Similarity=0.339 Sum_probs=13.0
Q ss_pred ccccccchhhhcccChhhHhhhhh
Q 025496 192 MALCEICGSFLVANDAAERTQSHI 215 (252)
Q Consensus 192 l~VCdVCGA~Ls~~D~d~Rl~dH~ 215 (252)
...|++||.-.+.. .-|..|.
T Consensus 3 ~~~C~~C~k~f~~~---~~l~~H~ 23 (30)
T 2lvr_A 3 PYVCIHCQRQFADP---GALQRHV 23 (30)
Confidence 36899999765432 3355554
No 84
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=23.87 E-value=18 Score=24.21 Aligned_cols=9 Identities=33% Similarity=0.951 Sum_probs=7.6
Q ss_pred cccccchhh
Q 025496 193 ALCEICGSF 201 (252)
Q Consensus 193 ~VCdVCGA~ 201 (252)
-+|++|||-
T Consensus 37 w~CP~Cg~~ 45 (52)
T 1e8j_A 37 WACPVCGAS 45 (52)
T ss_dssp CCCSSSCCC
T ss_pred CcCCCCCCc
Confidence 489999985
No 85
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=23.85 E-value=18 Score=18.58 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=13.8
Q ss_pred cccccccchhhhcccChhhHhhhhh
Q 025496 191 KMALCEICGSFLVANDAAERTQSHI 215 (252)
Q Consensus 191 kl~VCdVCGA~Ls~~D~d~Rl~dH~ 215 (252)
+...|++||.-.+ ...-|..|.
T Consensus 2 k~~~C~~C~~~f~---~~~~l~~H~ 23 (30)
T 2m0d_A 2 KPYQCDYCGRSFS---DPTSKMRHL 23 (30)
T ss_dssp CCEECTTTCCEES---CHHHHHHHH
T ss_pred cCccCCCCCcccC---CHHHHHHHH
Confidence 3468999997644 334455564
No 86
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=23.82 E-value=18 Score=24.47 Aligned_cols=9 Identities=33% Similarity=0.641 Sum_probs=7.6
Q ss_pred cccccchhh
Q 025496 193 ALCEICGSF 201 (252)
Q Consensus 193 ~VCdVCGA~ 201 (252)
-+|++|||-
T Consensus 37 w~CP~Cga~ 45 (55)
T 2v3b_B 37 WVCPDCGVG 45 (55)
T ss_dssp CCCTTTCCC
T ss_pred CcCCCCCCC
Confidence 489999985
No 87
>3r8s_X 50S ribosomal protein L28; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2i2v_X 2wwq_0* 3fik_X 3j01_X 3j0t_Z* 3j0w_Z* 3j0y_Z* 3j11_Z* 3j12_Z* 3j14_Z* 3j19_X 3oas_X 3oat_X* 2i2t_X* 3ofd_X 3ofc_X 3ofr_X* 3ofz_X* 3og0_X 3ofq_X ...
Probab=23.62 E-value=19 Score=26.05 Aligned_cols=13 Identities=23% Similarity=0.580 Sum_probs=9.5
Q ss_pred cccccchhhhccc
Q 025496 193 ALCEICGSFLVAN 205 (252)
Q Consensus 193 ~VCdVCGA~Ls~~ 205 (252)
+||+|||.--..+
T Consensus 2 r~C~itGK~~~~G 14 (77)
T 3r8s_X 2 RVCQVTGKRPVTG 14 (77)
T ss_dssp CCCTTTCCCCEEE
T ss_pred CEeeeCCCccccC
Confidence 6899999755444
No 88
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=23.59 E-value=1.9e+02 Score=21.93 Aligned_cols=19 Identities=11% Similarity=0.121 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 025496 94 EKLVMDLDRRVRRGRERLS 112 (252)
Q Consensus 94 ~~~i~d~drkI~~~k~RL~ 112 (252)
..-+.-+++||+....+++
T Consensus 87 ~eA~~~l~~r~~~l~~~~~ 105 (133)
T 1fxk_C 87 EDAMESIKSQKNELESTLQ 105 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455566667766666664
No 89
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=23.38 E-value=31 Score=22.89 Aligned_cols=28 Identities=21% Similarity=0.439 Sum_probs=18.7
Q ss_pred ccccccccchhhhcccChhhHhhhhhcchhhhc
Q 025496 190 KKMALCEICGSFLVANDAAERTQSHISGKQHIG 222 (252)
Q Consensus 190 qkl~VCdVCGA~Ls~~D~d~Rl~dH~~GK~H~G 222 (252)
.+..+|++||.-.+. ..-|..|. ++|.|
T Consensus 30 ekp~~C~~C~k~F~~---~~~L~~H~--~~Htg 57 (60)
T 4gzn_C 30 YRPRSCPECGKCFRD---QSEVNRHL--KVHQN 57 (60)
T ss_dssp CCCEECTTTCCEESS---HHHHHHHG--GGGSC
T ss_pred CcCeECCCCCCCcCC---HHHHHHHh--CccCC
Confidence 466889999976543 35567775 46665
No 90
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.98 E-value=23 Score=20.27 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=14.9
Q ss_pred ccccccccchhhhcccChhhHhhhhh
Q 025496 190 KKMALCEICGSFLVANDAAERTQSHI 215 (252)
Q Consensus 190 qkl~VCdVCGA~Ls~~D~d~Rl~dH~ 215 (252)
.+...|++||.-.+. ..-|..|.
T Consensus 8 ~k~~~C~~C~k~f~~---~~~L~~H~ 30 (42)
T 2yte_A 8 EKPYSCAECKETFSD---NNRLVQHQ 30 (42)
T ss_dssp CCSCBCTTTCCBCSS---HHHHHHHH
T ss_pred CCCeECCCCCCccCC---HHHHHHHH
Confidence 456899999976443 34455554
No 91
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=22.89 E-value=21 Score=18.26 Aligned_cols=21 Identities=14% Similarity=0.252 Sum_probs=13.1
Q ss_pred ccccccchhhhcccChhhHhhhhh
Q 025496 192 MALCEICGSFLVANDAAERTQSHI 215 (252)
Q Consensus 192 l~VCdVCGA~Ls~~D~d~Rl~dH~ 215 (252)
...|++||.-.. ....|..|.
T Consensus 3 ~~~C~~C~k~f~---~~~~l~~H~ 23 (27)
T 2kvh_A 3 PFSCSLCPQRSR---DFSAMTKHL 23 (27)
T ss_dssp CEECSSSSCEES---SHHHHHHHH
T ss_pred CccCCCcChhhC---CHHHHHHHH
Confidence 468999997544 234455553
No 92
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.35 E-value=38 Score=17.02 Aligned_cols=21 Identities=14% Similarity=0.308 Sum_probs=12.6
Q ss_pred ccccccchhhhcccChhhHhhhhh
Q 025496 192 MALCEICGSFLVANDAAERTQSHI 215 (252)
Q Consensus 192 l~VCdVCGA~Ls~~D~d~Rl~dH~ 215 (252)
...|++||.-.+.. .-|..|.
T Consensus 2 ~~~C~~C~~~f~~~---~~l~~H~ 22 (29)
T 2m0e_A 2 EHKCPHCDKKFNQV---GNLKAHL 22 (29)
T ss_dssp CCCCSSCCCCCCTT---THHHHHH
T ss_pred CCcCCCCCcccCCH---HHHHHHH
Confidence 35799999754433 3344554
No 93
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.21 E-value=19 Score=21.04 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=15.2
Q ss_pred ccccccccchhhhcccChhhHhhhhh
Q 025496 190 KKMALCEICGSFLVANDAAERTQSHI 215 (252)
Q Consensus 190 qkl~VCdVCGA~Ls~~D~d~Rl~dH~ 215 (252)
.+...|++||.-... ..-|..|.
T Consensus 10 ~k~~~C~~C~k~f~~---~~~L~~H~ 32 (44)
T 2eoj_A 10 ENPYECCECGKVFSR---KDQLVSHQ 32 (44)
T ss_dssp CCSCEETTTTEECSS---HHHHHHHH
T ss_pred CcCeeCCCCCCccCC---HHHHHHHH
Confidence 456899999976443 34455564
No 94
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=21.98 E-value=21 Score=27.51 Aligned_cols=9 Identities=33% Similarity=0.981 Sum_probs=8.0
Q ss_pred cccccchhh
Q 025496 193 ALCEICGSF 201 (252)
Q Consensus 193 ~VCdVCGA~ 201 (252)
.||++|||-
T Consensus 72 Y~CpiCGAT 80 (106)
T 3alr_A 72 YKCPLCGAT 80 (106)
T ss_dssp CCCTTTCCC
T ss_pred ccCCCCCCc
Confidence 899999984
No 95
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=21.87 E-value=36 Score=20.01 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=15.1
Q ss_pred ccccccccchhhhcccChhhHhhhhh
Q 025496 190 KKMALCEICGSFLVANDAAERTQSHI 215 (252)
Q Consensus 190 qkl~VCdVCGA~Ls~~D~d~Rl~dH~ 215 (252)
.+...|++||.-.+.. ..|..|.
T Consensus 10 ~k~~~C~~C~k~f~~~---~~L~~H~ 32 (46)
T 2ely_A 10 EKPFKCVECGKGFSRR---SALNVHH 32 (46)
T ss_dssp CCSBCCSSSCCCBSST---THHHHHH
T ss_pred CCCcccCccCcccCCH---HHHHHHH
Confidence 4568999999865544 3455554
No 96
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=21.82 E-value=2.4e+02 Score=20.66 Aligned_cols=53 Identities=9% Similarity=0.130 Sum_probs=39.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 025496 123 ISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLT 175 (252)
Q Consensus 123 ~~~~~~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ek~~l~ 175 (252)
..++..+.|.+-..-|+.|..+.+...++|+-.+--.-...++.-+.....+.
T Consensus 23 ~~~~lrq~I~DKQ~~i~~Lt~eLq~A~~eaNpaeIA~~~~~L~qAraDL~~l~ 75 (90)
T 4b6x_A 23 AGAALRQEIEDKQLMVNNLTDELQDAIDEANPAEIANTSQQLRHARADLADLQ 75 (90)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHhHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999998765444444444444433333
No 97
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.61 E-value=24 Score=20.18 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=15.4
Q ss_pred ccccccccchhhhcccChhhHhhhhh
Q 025496 190 KKMALCEICGSFLVANDAAERTQSHI 215 (252)
Q Consensus 190 qkl~VCdVCGA~Ls~~D~d~Rl~dH~ 215 (252)
.+...|++||.-.+. ...|..|.
T Consensus 9 ~k~~~C~~C~k~f~~---~~~L~~H~ 31 (42)
T 2ytb_A 9 EKPYRCDQCGKAFSQ---KGSLIVHI 31 (42)
T ss_dssp CCSBCCTTTTCCBSS---HHHHHTTG
T ss_pred CCCeeCCCccchhCC---HHHHHHHH
Confidence 456899999976443 34466665
No 98
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=21.46 E-value=21 Score=26.18 Aligned_cols=9 Identities=33% Similarity=0.682 Sum_probs=7.0
Q ss_pred cccccchhh
Q 025496 193 ALCEICGSF 201 (252)
Q Consensus 193 ~VCdVCGA~ 201 (252)
-||+||||-
T Consensus 61 W~CPvCga~ 69 (81)
T 2kn9_A 61 WSCPDCGAA 69 (81)
T ss_dssp CCCTTTCCC
T ss_pred CcCCCCCCC
Confidence 489999874
No 99
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=21.31 E-value=22 Score=25.23 Aligned_cols=9 Identities=33% Similarity=0.726 Sum_probs=7.6
Q ss_pred cccccchhh
Q 025496 193 ALCEICGSF 201 (252)
Q Consensus 193 ~VCdVCGA~ 201 (252)
-+|+||||-
T Consensus 41 w~CP~Cga~ 49 (70)
T 1dx8_A 41 FMCPACRSP 49 (70)
T ss_dssp CBCTTTCCB
T ss_pred CcCCCCCCC
Confidence 499999984
No 100
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=21.30 E-value=2.5e+02 Score=22.98 Aligned_cols=49 Identities=20% Similarity=0.187 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCHHHH--HHHHHHHHHHHHHHHHHHhhh
Q 025496 130 QLSVLEEKIKNLLEQVETLGEAGKVDEA--EALMRKVEILNVEKTTLTQQS 178 (252)
Q Consensus 130 ~i~~l~~~I~~ll~~aE~LGeeG~VdeA--~~~~~~~e~Lk~ek~~l~~~~ 178 (252)
++..+..+|..+-.+...|-...+.|+| .++..++..|+.+......++
T Consensus 86 ~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~ 136 (175)
T 3lay_A 86 QTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKR 136 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666777777777777766654 556777777766665554443
No 101
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} SCOP: a.7.12.1
Probab=21.23 E-value=1.8e+02 Score=23.37 Aligned_cols=81 Identities=9% Similarity=0.060 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccccccc--chhhhcccC
Q 025496 129 EQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCEI--CGSFLVAND 206 (252)
Q Consensus 129 ~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ek~~l~~~~~~~~~~~~~~~qkl~VCdV--CGA~Ls~~D 206 (252)
..|..+...+..++..+-..-..++++.|..+...-+.+.....++.... ... -.-..|.+ +-.++.+..
T Consensus 117 ~~l~~m~~~v~~~l~~a~~a~~~~d~~~A~~v~~~d~~iD~l~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~i~~ 188 (217)
T 1xwm_A 117 GPLVLMYRLATDMVSTAIAAYDREDASLAAQIADMDHRVDEQYGEMMASL-LAV-------AKTDAATLAQMNVLALVAR 188 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHH-HSC-------CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-------HHhCcccHHHHHHHHHHHH
Confidence 56889999999999999998889999888776654443332222222221 000 00123433 334666777
Q ss_pred hhhHhhhhhcc
Q 025496 207 AAERTQSHISG 217 (252)
Q Consensus 207 ~d~Rl~dH~~G 217 (252)
+=.|++||..-
T Consensus 189 ~lERI~Dha~n 199 (217)
T 1xwm_A 189 YIERTADHATN 199 (217)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88999999753
No 102
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=21.23 E-value=25 Score=19.33 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=15.6
Q ss_pred cccccchhhhcccChhhHhhhhhcchhhhc
Q 025496 193 ALCEICGSFLVANDAAERTQSHISGKQHIG 222 (252)
Q Consensus 193 ~VCdVCGA~Ls~~D~d~Rl~dH~~GK~H~G 222 (252)
..|++||.-.+. ..-|..|. +.|.|
T Consensus 3 ~~C~~C~k~F~~---~~~L~~H~--~~H~~ 27 (33)
T 1rim_A 3 FACPECPKRFMR---SDHLSKHI--TLHEL 27 (33)
T ss_dssp CCCSSSCCCCSS---HHHHHHHH--HHHTT
T ss_pred ccCCCCCchhCC---HHHHHHHH--HHhCC
Confidence 679999986543 34466665 34544
No 103
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=21.14 E-value=2.2e+02 Score=19.95 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 025496 126 EKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQ 177 (252)
Q Consensus 126 ~~~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ek~~l~~~ 177 (252)
.+.+.|.+|+.++..+-...+. +..+.+.|+.+...|..+
T Consensus 26 RK~~~i~~LE~~v~~le~~~~~------------l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 26 RKEDHLKALETQVVTLKELHSS------------TTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Confidence 4556778888777666554443 345555666555555443
No 104
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=20.93 E-value=2.9e+02 Score=21.81 Aligned_cols=50 Identities=10% Similarity=0.204 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025496 128 SEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQS 178 (252)
Q Consensus 128 ~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ek~~l~~~~ 178 (252)
...|....++|..+...++.|.+.|..+ |..+...++.+......+....
T Consensus 153 ~~~l~~~~~~i~~l~~~a~~L~~~~h~~-~~~I~~~~~~l~~rw~~l~~~~ 202 (214)
T 1s35_A 153 LGSMENNRDKVLSPVDSGNKLVAEGNLY-SDKIKEKVQLIEDRHRKNNEKA 202 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCTT-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777889999999999999998765 5567777777777776665543
No 105
>3abq_A Ethanolamine ammonia-lyase heavy chain; (beta/alpha)8 fold, cobalt, cobalamin; HET: B12; 2.05A {Escherichia coli} PDB: 3abo_A* 3abr_A* 3abs_A* 3any_A* 3ao0_A*
Probab=20.68 E-value=23 Score=33.63 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=17.3
Q ss_pred ccccccchhh--hcccChhh--H--hhhhhcchhh
Q 025496 192 MALCEICGSF--LVANDAAE--R--TQSHISGKQH 220 (252)
Q Consensus 192 l~VCdVCGA~--Ls~~D~d~--R--l~dH~~GK~H 220 (252)
+-|=.|-|=+ =-..|..| | |+|||.||+|
T Consensus 321 ~LVNtVVGFIGPEyLydgkQiiRAgLEDhF~GKL~ 355 (453)
T 3abq_A 321 FIVNTVVGFIGPEYLYNDRQIIRAGLEDHFMGKLS 355 (453)
T ss_dssp SEEEEETTSSCTTTSCBHHHHHHHHHHHHHHHHHT
T ss_pred ceEeecceecccceeecchhhhhcchHhhhhhhhc
Confidence 3455565521 01345554 3 7999999987
No 106
>2qez_A Ethanolamine ammonia-lyase heavy chain; ethanol ammonia lyase large subunit (EUTB), structural genomics; HET: MSE; 2.15A {Listeria monocytogenes serotype 4B}
Probab=20.65 E-value=23 Score=33.62 Aligned_cols=16 Identities=31% Similarity=0.518 Sum_probs=12.1
Q ss_pred cChhh--H--hhhhhcchhh
Q 025496 205 NDAAE--R--TQSHISGKQH 220 (252)
Q Consensus 205 ~D~d~--R--l~dH~~GK~H 220 (252)
.|..| | |+|||.||+|
T Consensus 337 ydgkQiiRAgLEDhF~GKLl 356 (455)
T 2qez_A 337 YDSKQVIRAGLEDHFMGKLT 356 (455)
T ss_dssp CCTHHHHHHHHHHHHHHHHH
T ss_pred ecchhhhhcchHhhhhhhhc
Confidence 45554 3 7999999987
No 107
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=20.50 E-value=25 Score=20.21 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=15.1
Q ss_pred ccccccccchhhhcccChhhHhhhhh
Q 025496 190 KKMALCEICGSFLVANDAAERTQSHI 215 (252)
Q Consensus 190 qkl~VCdVCGA~Ls~~D~d~Rl~dH~ 215 (252)
.+...|++||.-.+.. .-|..|.
T Consensus 8 ~k~~~C~~C~k~f~~~---~~L~~H~ 30 (42)
T 2el5_A 8 ENPYECSECGKAFNRK---DQLISHQ 30 (42)
T ss_dssp CCSEECSSSCCEESSH---HHHHHHH
T ss_pred CCCccCCCcChhhCCH---HHHHHHH
Confidence 4568999999865543 3455554
No 108
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=20.30 E-value=38 Score=29.47 Aligned_cols=10 Identities=30% Similarity=0.511 Sum_probs=7.0
Q ss_pred CCCCcchhhcC
Q 025496 33 DKEVCPFYMVR 43 (252)
Q Consensus 33 D~~VCk~yL~G 43 (252)
=|+||++| =|
T Consensus 150 LPeiC~~Y-kG 159 (229)
T 3u9g_A 150 LPEICKSY-KG 159 (229)
T ss_dssp SCCBCTTC-CC
T ss_pred CchHHHHh-CC
Confidence 37788888 54
No 109
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=20.26 E-value=3.3e+02 Score=21.64 Aligned_cols=13 Identities=31% Similarity=0.733 Sum_probs=10.3
Q ss_pred cccccccchhhhc
Q 025496 191 KMALCEICGSFLV 203 (252)
Q Consensus 191 kl~VCdVCGA~Ls 203 (252)
..-+|+.||..+.
T Consensus 110 ~yg~C~~Cg~~Ip 122 (151)
T 1tjl_A 110 DFGYCESCGVEIG 122 (151)
T ss_dssp CCSBCSSSSCBCC
T ss_pred CCceeCCCCCcch
Confidence 3479999998864
No 110
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=20.20 E-value=2.6e+02 Score=20.48 Aligned_cols=11 Identities=18% Similarity=0.468 Sum_probs=4.1
Q ss_pred HHHHHHHHHHh
Q 025496 138 IKNLLEQVETL 148 (252)
Q Consensus 138 I~~ll~~aE~L 148 (252)
|+.|..+++.|
T Consensus 60 Ld~L~dkse~L 70 (96)
T 1sfc_A 60 LSELDDRADAL 70 (96)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 111
>2vqe_T 30S ribosomal protein S20; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.7.6.1 PDB: 1gix_W* 1hnw_T* 1hnx_T* 1hnz_T* 1hr0_T 1j5e_T 1jgo_W* 1jgp_W* 1jgq_W* 1ml5_W* 1yl4_W 2b64_T* 2b9m_T* 2b9o_T* 2f4v_T* 2ow8_u* 2qnh_u* 2uxb_T* 1fjg_T* 2uxd_T* ...
Probab=20.06 E-value=2.2e+02 Score=21.70 Aligned_cols=35 Identities=37% Similarity=0.496 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Q 025496 133 VLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEIL 167 (252)
Q Consensus 133 ~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~L 167 (252)
.+-..+-..+.+++++.+.|+.+.|+.++..+...
T Consensus 28 a~kS~~rT~iKkv~~Ai~~gdk~~A~~~l~~a~s~ 62 (106)
T 2vqe_T 28 AKKSAIKTLSKKAVQLAQEGKAEEALKIMRKAESL 62 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45567778888999999999999999998887765
No 112
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.02 E-value=26 Score=20.73 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=15.1
Q ss_pred ccccccccchhhhcccChhhHhhhhh
Q 025496 190 KKMALCEICGSFLVANDAAERTQSHI 215 (252)
Q Consensus 190 qkl~VCdVCGA~Ls~~D~d~Rl~dH~ 215 (252)
.+...|++||.-.+. ...|..|.
T Consensus 10 ~k~~~C~~C~k~f~~---~~~L~~H~ 32 (46)
T 2yto_A 10 EKPYKCSDCGKAFTR---KSGLHIHQ 32 (46)
T ss_dssp CCCEECSSSCCEESS---HHHHHHHH
T ss_pred CCCEECcccCCccCC---HhHHHHHH
Confidence 456899999976543 34455554
Done!