Query 025497
Match_columns 252
No_of_seqs 122 out of 438
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 06:27:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025497.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025497hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5040 BMH1 14-3-3 family pro 100.0 2.2E-94 4.7E-99 609.5 16.1 234 10-246 4-237 (268)
2 smart00101 14_3_3 14-3-3 homol 100.0 1.7E-91 3.7E-96 620.3 25.0 238 11-250 1-239 (244)
3 PF00244 14-3-3: 14-3-3 protei 100.0 8.6E-87 1.9E-91 589.5 23.7 236 11-249 1-236 (236)
4 KOG0841 Multifunctional chaper 100.0 2.9E-83 6.3E-88 556.1 20.6 237 10-249 1-238 (247)
5 PF13424 TPR_12: Tetratricopep 96.1 0.013 2.7E-07 42.0 4.9 55 155-211 21-75 (78)
6 KOG1840 Kinesin light chain [C 93.4 9.1 0.0002 38.0 18.7 188 13-215 201-400 (508)
7 TIGR00990 3a0801s09 mitochondr 93.2 2.7 5.9E-05 41.9 14.5 54 155-210 483-536 (615)
8 PF12862 Apc5: Anaphase-promot 90.5 1.7 3.6E-05 32.7 7.4 71 139-215 3-74 (94)
9 PF13414 TPR_11: TPR repeat; P 82.3 6.7 0.00014 26.7 6.3 47 155-210 19-66 (69)
10 PF13374 TPR_10: Tetratricopep 80.0 1.8 3.9E-05 26.4 2.4 24 155-178 18-41 (42)
11 PF04781 DUF627: Protein of un 78.9 5 0.00011 31.8 5.1 58 111-169 16-74 (111)
12 KOG4162 Predicted calmodulin-b 77.8 80 0.0017 33.0 14.3 161 24-210 336-506 (799)
13 KOG1840 Kinesin light chain [C 70.5 1.2E+02 0.0026 30.2 19.1 187 13-222 285-490 (508)
14 PF13174 TPR_6: Tetratricopept 68.9 11 0.00025 21.5 3.9 27 13-39 2-28 (33)
15 PF07719 TPR_2: Tetratricopept 68.4 12 0.00026 21.6 3.9 26 14-39 4-29 (34)
16 PF12569 NARP1: NMDA receptor- 68.2 1.3E+02 0.0029 29.9 17.6 61 149-210 156-222 (517)
17 TIGR02917 PEP_TPR_lipo putativ 66.9 1.4E+02 0.003 29.6 15.9 59 12-76 704-762 (899)
18 PF13431 TPR_17: Tetratricopep 65.0 6.8 0.00015 23.9 2.3 34 161-203 1-34 (34)
19 TIGR00990 3a0801s09 mitochondr 63.5 1.6E+02 0.0035 29.2 17.8 74 155-237 524-597 (615)
20 PF13424 TPR_12: Tetratricopep 62.1 15 0.00032 25.6 4.1 37 177-215 1-37 (78)
21 PF13428 TPR_14: Tetratricopep 59.0 19 0.00042 22.7 3.8 26 14-39 4-29 (44)
22 PF13181 TPR_8: Tetratricopept 57.8 28 0.00061 20.1 4.2 27 13-39 3-29 (34)
23 PF01765 RRF: Ribosome recycli 56.9 54 0.0012 27.3 7.2 73 45-118 85-157 (165)
24 PF13176 TPR_7: Tetratricopept 55.5 24 0.00052 21.4 3.7 26 14-39 2-27 (36)
25 PRK14720 transcript cleavage f 55.2 75 0.0016 33.9 9.3 84 120-213 94-180 (906)
26 PF13371 TPR_9: Tetratricopept 54.4 55 0.0012 22.2 5.9 61 156-234 12-72 (73)
27 PF00515 TPR_1: Tetratricopept 54.3 26 0.00057 20.3 3.7 26 14-39 4-29 (34)
28 COG0233 Frr Ribosome recycling 53.5 64 0.0014 27.9 7.1 73 45-118 105-177 (187)
29 KOG4759 Ribosome recycling fac 52.8 73 0.0016 29.0 7.6 71 45-118 183-253 (263)
30 CHL00033 ycf3 photosystem I as 52.1 1.2E+02 0.0027 24.3 8.7 69 155-232 88-162 (168)
31 PF06552 TOM20_plant: Plant sp 51.4 59 0.0013 28.1 6.5 80 141-230 37-122 (186)
32 TIGR02521 type_IV_pilW type IV 50.6 1.3E+02 0.0028 24.1 16.7 166 12-211 32-198 (234)
33 PF14559 TPR_19: Tetratricopep 49.6 76 0.0016 21.1 5.9 44 156-208 8-51 (68)
34 TIGR02917 PEP_TPR_lipo putativ 49.2 2.8E+02 0.006 27.5 17.2 27 13-39 467-493 (899)
35 PRK09782 bacteriophage N4 rece 48.3 3.9E+02 0.0084 28.9 16.7 26 14-39 512-537 (987)
36 PRK12794 flaF flagellar biosyn 48.3 26 0.00057 28.1 3.7 53 191-243 8-60 (122)
37 cd05804 StaR_like StaR_like; a 47.4 2.1E+02 0.0046 25.6 13.3 42 12-55 7-48 (355)
38 cd00520 RRF Ribosome recycling 46.6 72 0.0016 27.1 6.4 73 45-118 99-171 (179)
39 TIGR00496 frr ribosome recycli 45.8 87 0.0019 26.6 6.8 73 45-118 94-166 (176)
40 CHL00033 ycf3 photosystem I as 45.4 79 0.0017 25.5 6.4 50 155-210 51-100 (168)
41 PRK00083 frr ribosome recyclin 44.7 92 0.002 26.7 6.8 73 45-118 103-175 (185)
42 PRK10049 pgaA outer membrane p 43.9 3.9E+02 0.0083 27.6 14.1 55 14-74 86-140 (765)
43 PRK15363 pathogenicity island 42.6 84 0.0018 26.4 6.0 72 152-236 82-155 (157)
44 TIGR02795 tol_pal_ybgF tol-pal 41.6 1.2E+02 0.0026 22.0 6.4 50 156-211 56-105 (119)
45 PRK12793 flaF flagellar biosyn 40.4 35 0.00077 27.1 3.3 52 191-243 6-58 (115)
46 COG3947 Response regulator con 40.2 46 0.001 31.1 4.4 48 190-243 288-335 (361)
47 PF14559 TPR_19: Tetratricopep 39.3 44 0.00096 22.3 3.4 53 23-80 3-55 (68)
48 PF12895 Apc3: Anaphase-promot 38.2 55 0.0012 23.2 3.9 43 162-207 41-83 (84)
49 PRK02603 photosystem I assembl 37.8 1.3E+02 0.0028 24.4 6.6 49 156-210 52-100 (172)
50 PF03755 YicC_N: YicC-like fam 37.0 65 0.0014 26.6 4.6 61 158-218 83-147 (159)
51 smart00028 TPR Tetratricopepti 33.4 73 0.0016 16.3 3.8 26 14-39 4-29 (34)
52 PF03635 Vps35: Vacuolar prote 33.1 5.4E+02 0.012 27.0 11.4 40 155-194 701-741 (762)
53 PF13432 TPR_16: Tetratricopep 32.8 1.5E+02 0.0032 19.6 6.8 53 16-73 2-54 (65)
54 PF13414 TPR_11: TPR repeat; P 31.7 1.6E+02 0.0034 19.6 6.9 46 12-61 4-49 (69)
55 COG4499 Predicted membrane pro 30.4 1E+02 0.0022 29.8 5.1 47 181-227 231-282 (434)
56 PLN03088 SGT1, suppressor of 28.9 1.5E+02 0.0032 27.7 6.0 46 156-210 19-64 (356)
57 PRK15331 chaperone protein Sic 28.7 2.6E+02 0.0057 23.6 6.9 71 154-239 86-156 (165)
58 PF12895 Apc3: Anaphase-promot 28.1 1E+02 0.0022 21.7 3.9 22 15-36 62-83 (84)
59 PF11568 Med29: Mediator compl 27.9 1.7E+02 0.0036 24.4 5.5 50 58-111 9-69 (148)
60 cd09235 V_Alix Middle V-domain 27.8 5E+02 0.011 24.1 9.9 136 88-243 199-337 (339)
61 KOG1126 DNA-binding cell divis 27.2 87 0.0019 32.0 4.3 47 155-210 505-551 (638)
62 PF13371 TPR_9: Tetratricopept 27.1 1.2E+02 0.0026 20.4 4.0 21 19-39 3-23 (73)
63 PRK11447 cellulose synthase su 26.7 8.6E+02 0.019 26.5 17.4 27 13-39 114-140 (1157)
64 PRK11788 tetratricopeptide rep 26.3 4.9E+02 0.011 23.5 16.5 24 16-39 112-135 (389)
65 PRK15179 Vi polysaccharide bio 26.2 7.5E+02 0.016 25.6 13.5 28 12-39 87-114 (694)
66 PF10083 DUF2321: Uncharacteri 26.2 4E+02 0.0086 22.4 7.8 34 29-65 83-116 (158)
67 PRK11447 cellulose synthase su 24.8 9.3E+02 0.02 26.2 15.3 57 16-77 356-412 (1157)
68 KOG0570 Transcriptional coacti 24.8 4.1E+02 0.0089 23.4 7.4 26 50-75 109-139 (223)
69 TIGR03504 FimV_Cterm FimV C-te 24.2 1.3E+02 0.0028 19.6 3.4 40 15-56 3-42 (44)
70 PF07309 FlaF: Flagellar prote 24.1 89 0.0019 24.6 3.1 47 196-243 11-57 (113)
71 PRK02603 photosystem I assembl 23.9 3.9E+02 0.0084 21.5 8.1 13 156-168 89-101 (172)
72 PF08424 NRDE-2: NRDE-2, neces 23.9 5.2E+02 0.011 23.6 8.7 85 155-246 118-212 (321)
73 KOG4234 TPR repeat-containing 23.7 5.1E+02 0.011 23.3 7.9 27 13-39 170-196 (271)
74 PF09969 DUF2203: Uncharacteri 23.6 3.8E+02 0.0082 21.3 8.4 65 47-111 3-67 (120)
75 KOG1107 Membrane coat complex 23.4 1.8E+02 0.004 30.1 5.8 43 155-197 656-699 (760)
76 PRK10747 putative protoheme IX 23.3 6.2E+02 0.013 23.7 14.5 180 6-212 184-391 (398)
77 PF14689 SPOB_a: Sensor_kinase 23.0 1.6E+02 0.0035 20.4 3.9 25 15-39 27-51 (62)
78 KOG2002 TPR-containing nuclear 22.7 1.7E+02 0.0037 31.5 5.6 52 160-215 250-303 (1018)
79 KOG0687 26S proteasome regulat 22.2 3.7E+02 0.0081 25.7 7.2 77 135-214 53-136 (393)
80 PF02259 FAT: FAT domain; Int 22.1 5.6E+02 0.012 22.7 12.4 28 12-39 147-174 (352)
81 KOG0547 Translocase of outer m 22.0 1.1E+02 0.0024 30.6 3.9 40 156-210 132-177 (606)
82 PRK10049 pgaA outer membrane p 21.6 9E+02 0.02 24.9 17.3 28 12-39 50-77 (765)
83 PF10516 SHNi-TPR: SHNi-TPR; 21.1 86 0.0019 19.8 2.0 37 137-176 2-38 (38)
84 PF08717 nsp8: nsp8 replicase; 20.6 1.2E+02 0.0026 26.4 3.3 37 155-211 15-51 (199)
85 PF08631 SPO22: Meiosis protei 20.5 6.1E+02 0.013 22.5 9.2 88 155-243 9-99 (278)
86 PHA02103 hypothetical protein 20.2 29 0.00062 27.5 -0.4 15 135-149 78-92 (135)
87 PF00887 ACBP: Acyl CoA bindin 20.1 3E+02 0.0066 20.0 5.2 36 25-64 3-38 (87)
No 1
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-94 Score=609.46 Aligned_cols=234 Identities=71% Similarity=1.079 Sum_probs=229.2
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhccCchhHH
Q 025497 10 TREQYVYLAKLAEQAERYEEMVEFMQKLVVGSTPAAELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEEHV 89 (252)
Q Consensus 10 ~r~~l~~~Aklaeq~ery~Dm~~~mk~~~~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~ 89 (252)
.|++.+|+|||++||+||++|++-||.++. .+ .+|+.+|||||||||||+||+||+|||++++++||++++||..++
T Consensus 4 ~rE~svylAkLaeqAERYe~MvenMk~vas--~~-~eLsVeeRNLlSVAYKNvigaRRaSWRivsSieQKeEsk~~~~qv 80 (268)
T COG5040 4 SREDSVYLAKLAEQAERYEEMVENMKLVAS--SG-QELSVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESKGNTHQV 80 (268)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cc-chhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcCCChhHH
Confidence 499999999999999999999999999997 55 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHhHHhhhccccccchhhcccchhHHHHHHHHHHHHHHHHHHH
Q 025497 90 SLVKEYRSKVEKELSDVCASILRLLEANLIPSATASESKVFYLKMKGDYHRYMAEFKIGDERKAAAEDTMQSYKAAQDIA 169 (252)
Q Consensus 90 ~~i~~yr~ki~~EL~~~C~eil~lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a 169 (252)
.+|+.||++|++||..||++|+++|++||||.+++.|++|||+|||||||||+|||..|+.+.++.+.+.++|+.|.++|
T Consensus 81 ~lI~eyrkkiE~EL~~icddiL~vl~~hlipaa~~~EskvFyyKMKGDYyRYlAEf~~G~~~~e~a~~slE~YK~AseiA 160 (268)
T COG5040 81 ELIKEYRKKIETELTKICDDILSVLEKHLIPAATTGESKVFYYKMKGDYYRYLAEFSVGEAREEAADSSLEAYKAASEIA 160 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEeecchHHHHHHHhccchHhHHHHHhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCcchHhHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHhhHhhhhcccc
Q 025497 170 GADLAPTHPIRLGLALNFSVFYYEILNQSDKACSMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDVQ 246 (252)
Q Consensus 170 ~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~ilqlLrDNl~lW~~e~~ 246 (252)
..+||||||||||||||||||||||+|++++||.+||+|||+||++||+||||+|+|+|+||||||||||+||++.+
T Consensus 161 ~teLpPT~PirLGLALNfSVFyYEIlnspdkAC~lAKqaFDeAI~ELDtLSEEsYkDSTLIMQLLRDNLTLWTSd~e 237 (268)
T COG5040 161 TTELPPTHPIRLGLALNFSVFYYEILNSPDKACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDAE 237 (268)
T ss_pred hccCCCCCchhhhheecceeeeeecccCcHHHHHHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHHhcceeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998744
No 2
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=100.00 E-value=1.7e-91 Score=620.28 Aligned_cols=238 Identities=77% Similarity=1.149 Sum_probs=228.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhccC-CCCCCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhccCchhHH
Q 025497 11 REQYVYLAKLAEQAERYEEMVEFMQKLVVGST-PAAELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEEHV 89 (252)
Q Consensus 11 r~~l~~~Aklaeq~ery~Dm~~~mk~~~~~~~-~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~ 89 (252)
|++++|+|||++|||||+||+++||++++ + ++.+||.||||||||||||+||++|+|||+|++++++++.+|++.++
T Consensus 1 re~~v~~Aklaeq~eRyddm~~~mk~~~~--~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~~ 78 (244)
T smart00101 1 REENVYMAKLAEQAERYEEMVEFMEKVAK--TVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHV 78 (244)
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHh--hcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHHH
Confidence 68999999999999999999999999998 4 32599999999999999999999999999999999998878887888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHhHHhhhccccccchhhcccchhHHHHHHHHHHHHHHHHHHH
Q 025497 90 SLVKEYRSKVEKELSDVCASILRLLEANLIPSATASESKVFYLKMKGDYHRYMAEFKIGDERKAAAEDTMQSYKAAQDIA 169 (252)
Q Consensus 90 ~~i~~yr~ki~~EL~~~C~eil~lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a 169 (252)
+.+++||++|++||..+|++||++||++|||.+++++++|||+|||||||||+|||..|+++++++++|+++|++|+++|
T Consensus 79 ~~~~~yr~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a 158 (244)
T smart00101 79 ASIKEYRGKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIA 158 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCcchHhHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHhhHhhhhcccccCC
Q 025497 170 GADLAPTHPIRLGLALNFSVFYYEILNQSDKACSMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDVQDQL 249 (252)
Q Consensus 170 ~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~ilqlLrDNl~lW~~e~~~~~ 249 (252)
+++||||||+||||+||||||||||+|++++||++|++|||+|++++|+++|++|+|+++|||||||||++|++++++++
T Consensus 159 ~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld~l~ee~y~dstlImqLLrDNL~lW~~~~~~~~ 238 (244)
T smart00101 159 LAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDLQDDG 238 (244)
T ss_pred HccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccChhhhHHHHHHHHHHHHHHHhccCCCCcch
Confidence 98999999999999999999999999999999999999999999999999999999999999999999999999866554
Q ss_pred C
Q 025497 250 D 250 (252)
Q Consensus 250 ~ 250 (252)
.
T Consensus 239 ~ 239 (244)
T smart00101 239 A 239 (244)
T ss_pred h
Confidence 3
No 3
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=100.00 E-value=8.6e-87 Score=589.51 Aligned_cols=236 Identities=67% Similarity=1.056 Sum_probs=222.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhccCchhHHH
Q 025497 11 REQYVYLAKLAEQAERYEEMVEFMQKLVVGSTPAAELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEEHVS 90 (252)
Q Consensus 11 r~~l~~~Aklaeq~ery~Dm~~~mk~~~~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~ 90 (252)
|++++|||||++|||||+||+++||++++ ++ ++||.|||||||+||||+||++|+|||+|++++++++.+|++..++
T Consensus 1 Re~li~~Aklaeq~eRy~dmv~~mk~~~~--~~-~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~ 77 (236)
T PF00244_consen 1 REELIYLAKLAEQAERYDDMVEYMKQLIE--MN-PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVK 77 (236)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHH--TS-S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHc--cC-CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHH
Confidence 89999999999999999999999999999 65 9999999999999999999999999999999999999998889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHhHHhhhccccccchhhcccchhHHHHHHHHHHHHHHHHHHHh
Q 025497 91 LVKEYRSKVEKELSDVCASILRLLEANLIPSATASESKVFYLKMKGDYHRYMAEFKIGDERKAAAEDTMQSYKAAQDIAG 170 (252)
Q Consensus 91 ~i~~yr~ki~~EL~~~C~eil~lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 170 (252)
.+++||++|++||..+|++|+++||++|+|.+++++++|||+|||||||||+|||..++++++++++|.++|++|+++|+
T Consensus 78 ~i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 157 (236)
T PF00244_consen 78 LIKDYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAK 157 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcchHhHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHhhHhhhhcccccCC
Q 025497 171 ADLAPTHPIRLGLALNFSVFYYEILNQSDKACSMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDVQDQL 249 (252)
Q Consensus 171 ~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~ilqlLrDNl~lW~~e~~~~~ 249 (252)
++||||||+||||+||||||||||+|++++||+||++|||+|++++|+++|++|+|+++|||||||||++|+++.++++
T Consensus 158 ~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l~e~~~~d~~~ilqlLrdNl~lW~~e~~~~~ 236 (236)
T PF00244_consen 158 KELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTLSEESYKDSTLILQLLRDNLTLWTSEEEEEE 236 (236)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGSHTTTHHHHHHHHHHHHHHHHHHTTT-----
T ss_pred cccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHhcccccccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999977653
No 4
>KOG0841 consensus Multifunctional chaperone (14-3-3 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-83 Score=556.13 Aligned_cols=237 Identities=73% Similarity=1.079 Sum_probs=231.3
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhccCchhHH
Q 025497 10 TREQYVYLAKLAEQAERYEEMVEFMQKLVVGSTPAAELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEEHV 89 (252)
Q Consensus 10 ~r~~l~~~Aklaeq~ery~Dm~~~mk~~~~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~ 89 (252)
+|++++++|++++|+|||+||+.+||.+++ .+ .+||.||||||||+||||||++|+|||+|++||||++++|++.++
T Consensus 1 ~~~~~v~~akl~eqaery~~m~~~Mk~v~~--~~-~eLtveernllsvayknVigarrasWriisSiEqKees~~~e~~v 77 (247)
T KOG0841|consen 1 EREELVYKAKLAEQAERYDEMVEAMKKVAE--LD-VELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESKGNEEKV 77 (247)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHhhcc--cc-hhhhHHHHhhhhhhhccccchhHHHHHHhhhhhhcccCCCcchHH
Confidence 489999999999999999999999999998 66 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC-cchHhHHhhhccccccchhhcccchhHHHHHHHHHHHHHHHHHH
Q 025497 90 SLVKEYRSKVEKELSDVCASILRLLEANLIPSATA-SESKVFYLKMKGDYHRYMAEFKIGDERKAAAEDTMQSYKAAQDI 168 (252)
Q Consensus 90 ~~i~~yr~ki~~EL~~~C~eil~lid~~Lip~~~~-~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~ 168 (252)
..+..||++|+.||..+|++++.++|.+|+|+++. .|++|||+|||||||||++||..|++|++++++++++|+.|+++
T Consensus 78 ~~i~~yr~~vE~El~~ic~~iL~lld~~Li~sa~~~~es~vf~~kmKgdy~rylae~~sg~erke~~~~sl~aYk~a~~i 157 (247)
T KOG0841|consen 78 KMIKEYRQKVETELAKICDDILSLLDKHLIPSATLPGESKVFYLKMKGDYYRYLAEFASGDERKEAADQSLEAYKEASEI 157 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeeeccchhHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988 78999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCcchHhHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHhhHhhhhcccccC
Q 025497 169 AGADLAPTHPIRLGLALNFSVFYYEILNQSDKACSMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDVQDQ 248 (252)
Q Consensus 169 a~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~ilqlLrDNl~lW~~e~~~~ 248 (252)
|+..|+|||||||||+||||||||||+|.|++||.|||+|||+||.++|++++++|+|||+||||||||||+|+++.+++
T Consensus 158 a~~~l~PthPirLgLaLnfSvf~yeilnsPe~ac~lak~a~d~ai~eldtl~e~sykdStlimqllrdnltlWts~~~~~ 237 (247)
T KOG0841|consen 158 AKAELQPTHPIRLGLALNFSVFYYEILNSPERACSLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGD 237 (247)
T ss_pred HHhcCCCCCchHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhhccccHHHHhhhHHHHHHHHHhhhhhccCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred C
Q 025497 249 L 249 (252)
Q Consensus 249 ~ 249 (252)
.
T Consensus 238 ~ 238 (247)
T KOG0841|consen 238 E 238 (247)
T ss_pred c
Confidence 3
No 5
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.10 E-value=0.013 Score=41.98 Aligned_cols=55 Identities=24% Similarity=0.388 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchHhHhhhHHHHHHHHhCChHHHHHHHHHHHHH
Q 025497 155 AEDTMQSYKAAQDIAGADLAPTHPIRLGLALNFSVFYYEILNQSDKACSMAKQAFEE 211 (252)
Q Consensus 155 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd~ 211 (252)
-++|...|++|+++ ...+++.||...-...|.+..++. +|+.++|++..++|++-
T Consensus 21 ~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 21 YDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Confidence 36799999999999 567899888777778888888776 79999999999998864
No 6
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=93.38 E-value=9.1 Score=37.98 Aligned_cols=188 Identities=16% Similarity=0.167 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhhcc---CCCCCCCHH-HHHHHHHHHHHhhhhhhHHHHHHH-HHhhhhhccCc--
Q 025497 13 QYVYLAKLAEQAERYEEMVEFMQKLVVGS---TPAAELTVE-ERNLLSVAYKNVIGSLRAAWRIVS-SIEQKEEGRKN-- 85 (252)
Q Consensus 13 ~l~~~Aklaeq~ery~Dm~~~mk~~~~~~---~~~~~Lt~e-ERnLls~ayKn~i~~~R~s~R~l~-~ieqk~~~~~~-- 85 (252)
.+.++|.+..+.|+|+.++...|+.+++- .+...+-.. -.+-|++.|-++ +..+.|..++. ++...+...|.
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~-~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL-GKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45568888889999999999999888631 011122222 344466666554 45667777664 34444444443
Q ss_pred hhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHhHHhhhccccccchhhcccchhHHHHHHHHHH
Q 025497 86 EEHVSLVKE-----YRSKVEKELSDVCASILRLLEANLIPSATASESKVFYLKMKGDYHRYMAEFKIGDERKAAAEDTMQ 160 (252)
Q Consensus 86 ~~~~~~i~~-----yr~ki~~EL~~~C~eil~lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~ 160 (252)
+.....+.+ |+.-=-.|-...|+.+++|..+.+ ....++-.-- +.++..-.....-.+.|..
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~--~~~~~~v~~~-----------l~~~~~~~~~~~~~Eea~~ 346 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLL--GASHPEVAAQ-----------LSELAAILQSMNEYEEAKK 346 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh--ccChHHHHHH-----------HHHHHHHHHHhcchhHHHH
Confidence 333333332 333344688899999999998833 3332332211 2222222222233678999
Q ss_pred HHHHHHHHHhccCCCCCcchHhHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHh
Q 025497 161 SYKAAQDIAGADLAPTHPIRLGLALNFSVFYYEILNQSDKACSMAKQAFEEAIAE 215 (252)
Q Consensus 161 aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd~ai~~ 215 (252)
.|+.|+++....+.+-||.-=|.--|+++.|+- +|..++|.++.++|+...-+.
T Consensus 347 l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~-~gk~~ea~~~~k~ai~~~~~~ 400 (508)
T KOG1840|consen 347 LLQKALKIYLDAPGEDNVNLAKIYANLAELYLK-MGKYKEAEELYKKAIQILREL 400 (508)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHhc
Confidence 999999999888999999999999999999886 799999999999998877553
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=93.25 E-value=2.7 Score=41.88 Aligned_cols=54 Identities=11% Similarity=0.170 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchHhHhhhHHHHHHHHhCChHHHHHHHHHHHH
Q 025497 155 AEDTMQSYKAAQDIAGADLAPTHPIRLGLALNFSVFYYEILNQSDKACSMAKQAFE 210 (252)
Q Consensus 155 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd 210 (252)
.+.|...|++|+++... ..+.++..++ .++.+..+|+-.|+.++|..+.++|+.
T Consensus 483 ~~~A~~~~~~Al~l~p~-~~~~~~~~~~-l~~~a~~~~~~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 483 FDEAIEKFDTAIELEKE-TKPMYMNVLP-LINKALALFQWKQDFIEAENLCEKALI 536 (615)
T ss_pred HHHHHHHHHHHHhcCCc-cccccccHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45678888888776532 3333332222 345555566666788888777776643
No 8
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.47 E-value=1.7 Score=32.71 Aligned_cols=71 Identities=18% Similarity=0.250 Sum_probs=51.1
Q ss_pred ccchhhcccchhHHHHHHHHHHHHHHHHHHHhccCCCCCcchHhHh-hhHHHHHHHHhCChHHHHHHHHHHHHHHHHh
Q 025497 139 HRYMAEFKIGDERKAAAEDTMQSYKAAQDIAGADLAPTHPIRLGLA-LNFSVFYYEILNQSDKACSMAKQAFEEAIAE 215 (252)
Q Consensus 139 yRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~-LN~SVF~yei~~~~~~A~~iak~afd~ai~~ 215 (252)
.+|+--+..++ -..|.+...+.++.+.....+.+...+..+ ||.+.+++. +|++++|+...++|++-|-..
T Consensus 3 l~~~~~~~~~d-----y~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 3 LRYLNALRSGD-----YSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHHHHHcCC-----HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHH
Confidence 34544444443 245778888888888777777755555554 778887776 699999999999999888764
No 9
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=82.27 E-value=6.7 Score=26.73 Aligned_cols=47 Identities=17% Similarity=0.323 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchHhHhhhHHHHHHHHhC-ChHHHHHHHHHHHH
Q 025497 155 AEDTMQSYKAAQDIAGADLAPTHPIRLGLALNFSVFYYEILN-QSDKACSMAKQAFE 210 (252)
Q Consensus 155 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yei~~-~~~~A~~iak~afd 210 (252)
-+.|...|++|+++ +|-.-.+..|.++-++. +| ++++|++..++|+.
T Consensus 19 ~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 19 YEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHH
Confidence 46689999999986 24445577788877776 57 79999998888764
No 10
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=79.96 E-value=1.8 Score=26.38 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCc
Q 025497 155 AEDTMQSYKAAQDIAGADLAPTHP 178 (252)
Q Consensus 155 ~~~a~~aY~~A~~~a~~~L~pt~p 178 (252)
.+.|...|++|+.+.+..++|.||
T Consensus 18 ~~~A~~~~~~al~~~~~~~G~~Hp 41 (42)
T PF13374_consen 18 YEEALELLEEALEIRERLLGPDHP 41 (42)
T ss_dssp HHHHHHHHHHHHHHH---------
T ss_pred cchhhHHHHHHHHHHHHHhccccc
Confidence 366999999999999988999998
No 11
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=78.86 E-value=5 Score=31.81 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=39.8
Q ss_pred HHHHHhcccCCCCCcchHhHHhhhccccccchhhcccc-hhHHHHHHHHHHHHHHHHHHH
Q 025497 111 LRLLEANLIPSATASESKVFYLKMKGDYHRYMAEFKIG-DERKAAAEDTMQSYKAAQDIA 169 (252)
Q Consensus 111 l~lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~-~~~~~~~~~a~~aY~~A~~~a 169 (252)
|.+|...+...-. .++..|-+...|+.+..+|....+ +-+....-.|.+||.+|..++
T Consensus 16 L~iied~i~~h~~-~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Ls 74 (111)
T PF04781_consen 16 LEIIEDLISRHGE-DESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELS 74 (111)
T ss_pred HHHHHHHHHHccC-CCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccC
Confidence 4444444433322 233337788999999999997765 556777888999999998654
No 12
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=77.77 E-value=80 Score=32.96 Aligned_cols=161 Identities=22% Similarity=0.263 Sum_probs=87.8
Q ss_pred hcCHHHHHHHHHHHhhccCCCCCCCHHHH-HHHHHHHHHhhhhhhHHHHHHHHHhhhhhccCchhHHHHHHHHHH-----
Q 025497 24 AERYEEMVEFMQKLVVGSTPAAELTVEER-NLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEEHVSLVKEYRS----- 97 (252)
Q Consensus 24 ~ery~Dm~~~mk~~~~~~~~~~~Lt~eER-nLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yr~----- 97 (252)
+|+|....+++.+.+- .-+..-|| +.++.+|-. .++--.+.+.+..--.+.+ .. +....++--++.
T Consensus 336 ~g~f~~lae~fE~~~~-----~~~~~~e~w~~~als~sa-ag~~s~Av~ll~~~~~~~~-~p-s~~s~~Lmasklc~e~l 407 (799)
T KOG4162|consen 336 CGQFEVLAEQFEQALP-----FSFGEHERWYQLALSYSA-AGSDSKAVNLLRESLKKSE-QP-SDISVLLMASKLCIERL 407 (799)
T ss_pred HHHHHHHHHHHHHHhH-----hhhhhHHHHHHHHHHHHH-hccchHHHHHHHhhccccc-CC-CcchHHHHHHHHHHhch
Confidence 4777777777777653 23333333 334444432 2333344444432111111 01 111122222222
Q ss_pred HHHHHHHHHHHHHHHHH---HhcccCCCCCcchHhHHhhhccccccchhhccc-chhHHHHHHHHHHHHHHHHHHHhccC
Q 025497 98 KVEKELSDVCASILRLL---EANLIPSATASESKVFYLKMKGDYHRYMAEFKI-GDERKAAAEDTMQSYKAAQDIAGADL 173 (252)
Q Consensus 98 ki~~EL~~~C~eil~li---d~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~-~~~~~~~~~~a~~aY~~A~~~a~~~L 173 (252)
+.-+|...+...++++. ..++.| --+++-|=-|-..|--.+ .++|.....++.++|++|.+ +
T Consensus 408 ~~~eegldYA~kai~~~~~~~~~l~~---------~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~-----~ 473 (799)
T KOG4162|consen 408 KLVEEGLDYAQKAISLLGGQRSHLKP---------RGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ-----F 473 (799)
T ss_pred hhhhhHHHHHHHHHHHhhhhhhhhhh---------hHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh-----c
Confidence 22356666666666533 122222 225667777776665544 57788889999999999975 6
Q ss_pred CCCCcchHhHhhhHHHHHHHHhCChHHHHHHHHHHHH
Q 025497 174 APTHPIRLGLALNFSVFYYEILNQSDKACSMAKQAFE 210 (252)
Q Consensus 174 ~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd 210 (252)
.|+|| -...+-|++|-+ .++.+.|...++.++.
T Consensus 474 d~~dp---~~if~lalq~A~-~R~l~sAl~~~~eaL~ 506 (799)
T KOG4162|consen 474 DPTDP---LVIFYLALQYAE-QRQLTSALDYAREALA 506 (799)
T ss_pred CCCCc---hHHHHHHHHHHH-HHhHHHHHHHHHHHHH
Confidence 68999 233444555554 6888888888888766
No 13
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=70.51 E-value=1.2e+02 Score=30.24 Aligned_cols=187 Identities=17% Similarity=0.161 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhhcc-CCCCCCCHHHHHHHHHH---------HHHhhhhhhHHHHHHHHHhhhhhc
Q 025497 13 QYVYLAKLAEQAERYEEMVEFMQKLVVGS-TPAAELTVEERNLLSVA---------YKNVIGSLRAAWRIVSSIEQKEEG 82 (252)
Q Consensus 13 ~l~~~Aklaeq~ery~Dm~~~mk~~~~~~-~~~~~Lt~eERnLls~a---------yKn~i~~~R~s~R~l~~ieqk~~~ 82 (252)
-+.-+|.+.-..|+|+++-.+++..+++. .......++--..|+.. |-..+.=.+.+.+++ +....
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~---~~~~g- 360 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY---LDAPG- 360 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH---Hhhcc-
Confidence 45567888888899999999999988754 10022333322222211 222333333333333 22211
Q ss_pred cCchhHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhcccCCCCCcchHhHHhhhccccccchhhcccchhHHH
Q 025497 83 RKNEEHVSLVKEYRSKV---------EKELSDVCASILRLLEANLIPSATASESKVFYLKMKGDYHRYMAEFKIGDERKA 153 (252)
Q Consensus 83 ~~~~~~~~~i~~yr~ki---------~~EL~~~C~eil~lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~ 153 (252)
..+. .+..++..+ .+|-..+-+.+|++.....=. .....-.+++.|-.+|+|--
T Consensus 361 ~~~~----~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~--~~~~~~~~l~~la~~~~~~k----------- 423 (508)
T KOG1840|consen 361 EDNV----NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGK--KDYGVGKPLNQLAEAYEELK----------- 423 (508)
T ss_pred ccch----HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccC--cChhhhHHHHHHHHHHHHhc-----------
Confidence 1110 111111111 234455566666655443311 12344566677766664321
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCcchHhHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCCC
Q 025497 154 AAEDTMQSYKAAQDIAGADLAPTHPIRLGLALNFSVFYYEILNQSDKACSMAKQAFEEAIAELDTLGEE 222 (252)
Q Consensus 154 ~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd~ai~~ld~l~ee 222 (252)
-...|.+.|.+|..+. ....|.||--++..+|-+.- |+-+|+.++|++++..+..-=-..+++.+.+
T Consensus 424 ~~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~-Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~ 490 (508)
T KOG1840|consen 424 KYEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAAL-YRAQGNYEAAEELEEKVLNAREQRLGTASPT 490 (508)
T ss_pred ccchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 2345889999999999 78999999999999999875 5678999999999998876655666655543
No 14
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=68.86 E-value=11 Score=21.49 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 025497 13 QYVYLAKLAEQAERYEEMVEFMQKLVV 39 (252)
Q Consensus 13 ~l~~~Aklaeq~ery~Dm~~~mk~~~~ 39 (252)
-+..+|.+..+.|+++++++.+++++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 356789999999999999999999987
No 15
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=68.38 E-value=12 Score=21.59 Aligned_cols=26 Identities=31% Similarity=0.552 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhh
Q 025497 14 YVYLAKLAEQAERYEEMVEFMQKLVV 39 (252)
Q Consensus 14 l~~~Aklaeq~ery~Dm~~~mk~~~~ 39 (252)
+..++.+..+.|+|+++++++++.+.
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 56789999999999999999999987
No 16
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=68.16 E-value=1.3e+02 Score=29.89 Aligned_cols=61 Identities=25% Similarity=0.344 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccCC------CCCcchHhHhhhHHHHHHHHhCChHHHHHHHHHHHH
Q 025497 149 DERKAAAEDTMQSYKAAQDIAGADLA------PTHPIRLGLALNFSVFYYEILNQSDKACSMAKQAFE 210 (252)
Q Consensus 149 ~~~~~~~~~a~~aY~~A~~~a~~~L~------pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd 210 (252)
..+..+++.-...|...++... .++ +..|.-+-.++.|-.-+|+.+|+.++|++...+|++
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~-~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ 222 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNG-SFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE 222 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccC-CCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 3455566666666666554332 233 235777888888888899999999999999888876
No 17
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=66.90 E-value=1.4e+02 Score=29.65 Aligned_cols=59 Identities=12% Similarity=0.091 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 025497 12 EQYVYLAKLAEQAERYEEMVEFMQKLVVGSTPAAELTVEERNLLSVAYKNVIGSLRAAWRIVSSI 76 (252)
Q Consensus 12 ~~l~~~Aklaeq~ery~Dm~~~mk~~~~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~i 76 (252)
.-...++.+..+.|+|++++..+++.+. .. +.- .-..-+..+|.. .|....+...+...
T Consensus 704 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~-~~~--~~~~~l~~~~~~-~g~~~~A~~~~~~~ 762 (899)
T TIGR02917 704 LGFELEGDLYLRQKDYPAAIQAYRKALK--RA-PSS--QNAIKLHRALLA-SGNTAEAVKTLEAW 762 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh--hC-CCc--hHHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence 3455678888888888888888888876 32 322 222333444432 34445555555443
No 18
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=65.01 E-value=6.8 Score=23.86 Aligned_cols=34 Identities=21% Similarity=0.377 Sum_probs=23.7
Q ss_pred HHHHHHHHHhccCCCCCcchHhHhhhHHHHHHHHhCChHHHHH
Q 025497 161 SYKAAQDIAGADLAPTHPIRLGLALNFSVFYYEILNQSDKACS 203 (252)
Q Consensus 161 aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~ 203 (252)
+|++|+++ .|.|| ....|++++|+. .|+.++|++
T Consensus 1 ~y~kAie~-----~P~n~---~a~~nla~~~~~-~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL-----NPNNA---EAYNNLANLYLN-QGDYEEAIA 34 (34)
T ss_pred ChHHHHHH-----CCCCH---HHHHHHHHHHHH-CcCHHhhcC
Confidence 47777753 35554 456788888886 599999863
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=63.48 E-value=1.6e+02 Score=29.24 Aligned_cols=74 Identities=16% Similarity=0.135 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchHhHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHH
Q 025497 155 AEDTMQSYKAAQDIAGADLAPTHPIRLGLALNFSVFYYEILNQSDKACSMAKQAFEEAIAELDTLGEESYKDSTLIMQLL 234 (252)
Q Consensus 155 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~ilqlL 234 (252)
.+.|.+.|++|+. +.|.++. ..++.+-.++ -.|+.++|+....+|..-+-..-+-+.--+|..++.+-..+
T Consensus 524 ~~eA~~~~~kAl~-----l~p~~~~---a~~~la~~~~-~~g~~~eAi~~~e~A~~l~~~~~e~~~a~~~~~a~~~~~~~ 594 (615)
T TIGR00990 524 FIEAENLCEKALI-----IDPECDI---AVATMAQLLL-QQGDVDEALKLFERAAELARTEGELVQAISYAEATRTQIQV 594 (615)
T ss_pred HHHHHHHHHHHHh-----cCCCcHH---HHHHHHHHHH-HccCHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777765 3455543 2223344444 47999999998888876654322222223566666664454
Q ss_pred Hhh
Q 025497 235 RDN 237 (252)
Q Consensus 235 rDN 237 (252)
+.+
T Consensus 595 ~~~ 597 (615)
T TIGR00990 595 QED 597 (615)
T ss_pred HHH
Confidence 444
No 20
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=62.08 E-value=15 Score=25.64 Aligned_cols=37 Identities=24% Similarity=0.290 Sum_probs=29.8
Q ss_pred CcchHhHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHh
Q 025497 177 HPIRLGLALNFSVFYYEILNQSDKACSMAKQAFEEAIAE 215 (252)
Q Consensus 177 ~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd~ai~~ 215 (252)
||.......|.+..|++ +|+.++|+...++|++- ...
T Consensus 1 H~~~a~~~~~la~~~~~-~~~~~~A~~~~~~al~~-~~~ 37 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRE-LGRYDEALDYYEKALDI-EEQ 37 (78)
T ss_dssp -HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-HHH
T ss_pred CHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH-HHH
Confidence 78888888899988886 79999999999999887 554
No 21
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=59.04 E-value=19 Score=22.70 Aligned_cols=26 Identities=12% Similarity=0.277 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhh
Q 025497 14 YVYLAKLAEQAERYEEMVEFMQKLVV 39 (252)
Q Consensus 14 l~~~Aklaeq~ery~Dm~~~mk~~~~ 39 (252)
...+|+...+.|+++++++.+++++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56789999999999999999999997
No 22
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=57.77 E-value=28 Score=20.08 Aligned_cols=27 Identities=37% Similarity=0.586 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 025497 13 QYVYLAKLAEQAERYEEMVEFMQKLVV 39 (252)
Q Consensus 13 ~l~~~Aklaeq~ery~Dm~~~mk~~~~ 39 (252)
-+..++++..+.|.|+.++.++++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356789999999999999999999987
No 23
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=56.89 E-value=54 Score=27.31 Aligned_cols=73 Identities=18% Similarity=0.208 Sum_probs=47.1
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025497 45 AELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEEHVSLVKEYRSKVEKELSDVCASILRLLEANL 118 (252)
Q Consensus 45 ~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yr~ki~~EL~~~C~eil~lid~~L 118 (252)
|.+|.|-|.-+....|...-..|.+.|.+..--.+.- ++.......-.+-.++.+++|..+-++.+.-||..+
T Consensus 85 P~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~l-kk~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~ 157 (165)
T PF01765_consen 85 PPPTEERRKELVKQAKKIAEEAKVSIRNIRRDAMKKL-KKLKKSKEISEDDIKKLEKEIQKLTDKYIKKIDELL 157 (165)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999999999864332221 100000002344555667777777777776666543
No 24
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=55.51 E-value=24 Score=21.36 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhh
Q 025497 14 YVYLAKLAEQAERYEEMVEFMQKLVV 39 (252)
Q Consensus 14 l~~~Aklaeq~ery~Dm~~~mk~~~~ 39 (252)
+..+|.+..+.|.|+.++++.++.+.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46789999999999999999998553
No 25
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=55.19 E-value=75 Score=33.92 Aligned_cols=84 Identities=12% Similarity=0.004 Sum_probs=53.6
Q ss_pred CCCCCcchHhHHhhhccccccch-hhcccch--hHHHHHHHHHHHHHHHHHHHhccCCCCCcchHhHhhhHHHHHHHHhC
Q 025497 120 PSATASESKVFYLKMKGDYHRYM-AEFKIGD--ERKAAAEDTMQSYKAAQDIAGADLAPTHPIRLGLALNFSVFYYEILN 196 (252)
Q Consensus 120 p~~~~~eskVfy~KmkgDyyRYl-aE~~~~~--~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yei~~ 196 (252)
+.........||++..|||+.-. |-+.-+. ++-.-.++|..+|++++++ .|.||. +||+=-|+|.-.
T Consensus 94 ~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~-----D~~n~~----aLNn~AY~~ae~- 163 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA-----DRDNPE----IVKKLATSYEEE- 163 (906)
T ss_pred ccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CcccHH----HHHHHHHHHHHh-
Confidence 33333456668888888887543 2222221 1112246688899988864 377764 566655555555
Q ss_pred ChHHHHHHHHHHHHHHH
Q 025497 197 QSDKACSMAKQAFEEAI 213 (252)
Q Consensus 197 ~~~~A~~iak~afd~ai 213 (252)
+.++|.+++++|+.--+
T Consensus 164 dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 164 DKEKAITYLKKAIYRFI 180 (906)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 99999999999987644
No 26
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=54.40 E-value=55 Score=22.21 Aligned_cols=61 Identities=18% Similarity=0.262 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchHhHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHH
Q 025497 156 EDTMQSYKAAQDIAGADLAPTHPIRLGLALNFSVFYYEILNQSDKACSMAKQAFEEAIAELDTLGEESYKDSTLIMQLL 234 (252)
Q Consensus 156 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~ilqlL 234 (252)
+.|.++++.++.+ +|-...+-++++.+++. +|+.++|+....++.... . ...+...+.++|
T Consensus 12 ~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l~~~--------p-~~~~~~~~~a~l 72 (73)
T PF13371_consen 12 EEALEVLERALEL--------DPDDPELWLQRARCLFQ-LGRYEEALEDLERALELS--------P-DDPDARALRAML 72 (73)
T ss_pred HHHHHHHHHHHHh--------CcccchhhHHHHHHHHH-hccHHHHHHHHHHHHHHC--------C-CcHHHHHHHHhc
Confidence 4566666666653 45556667778888776 699999988776666221 1 344566666554
No 27
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=54.30 E-value=26 Score=20.32 Aligned_cols=26 Identities=31% Similarity=0.416 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhh
Q 025497 14 YVYLAKLAEQAERYEEMVEFMQKLVV 39 (252)
Q Consensus 14 l~~~Aklaeq~ery~Dm~~~mk~~~~ 39 (252)
+..++.+..+.|+|++++.+.++.++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 45688889999999999999999997
No 28
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=53.50 E-value=64 Score=27.91 Aligned_cols=73 Identities=19% Similarity=0.208 Sum_probs=49.2
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025497 45 AELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEEHVSLVKEYRSKVEKELSDVCASILRLLEANL 118 (252)
Q Consensus 45 ~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yr~ki~~EL~~~C~eil~lid~~L 118 (252)
|+||.|-|.=|..-.|.+.-..|-|.|.+.-=... ..+....-...-++-.++.++++..+.++.+.-||..+
T Consensus 105 P~lTeErRkelvK~~k~~~EeakvaiRniRrda~d-~iKK~~K~~~isEDe~k~~e~~iQKlTd~yi~~iD~~~ 177 (187)
T COG0233 105 PPLTEERRKELVKVAKKYAEEAKVAVRNIRRDAND-KIKKLEKDKEISEDEVKKAEEEIQKLTDEYIKKIDELL 177 (187)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999988521111 00111100112355666777888888888888887654
No 29
>KOG4759 consensus Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=52.80 E-value=73 Score=28.97 Aligned_cols=71 Identities=21% Similarity=0.281 Sum_probs=50.0
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025497 45 AELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEEHVSLVKEYRSKVEKELSDVCASILRLLEANL 118 (252)
Q Consensus 45 ~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yr~ki~~EL~~~C~eil~lid~~L 118 (252)
|+.|.|-|.=|+...|.+....|.|+|-+..=.-+...+... ..-.+--.+++.||..+.++.++.+|..|
T Consensus 183 P~~T~E~Re~laK~~~~~~ee~K~slr~ir~~~~kk~~k~~~---~~~~D~vkkae~~l~~l~k~~v~~ld~ll 253 (263)
T KOG4759|consen 183 PPVTKESREKLAKVLKRYFEEYKQSLRKIRTKSIKKSKKNKK---SLSEDEVKKAEAELQKLAKDAVNKLDDLL 253 (263)
T ss_pred CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999999999999999986432222211111 02234455788888888888888887765
No 30
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=52.13 E-value=1.2e+02 Score=24.35 Aligned_cols=69 Identities=17% Similarity=0.061 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchHhHhhhHHHHHH------HHhCChHHHHHHHHHHHHHHHHhhcccCCCchHHHH
Q 025497 155 AEDTMQSYKAAQDIAGADLAPTHPIRLGLALNFSVFYY------EILNQSDKACSMAKQAFEEAIAELDTLGEESYKDST 228 (252)
Q Consensus 155 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~y------ei~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~ 228 (252)
.+.|..+|++|+.+ .|.+ .+...|.++.++ ..+|+.+.|....++|+.---. .-.++.+.+.++.
T Consensus 88 ~~eA~~~~~~Al~~-----~~~~---~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-a~~~~p~~~~~~~ 158 (168)
T CHL00033 88 HTKALEYYFQALER-----NPFL---PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQ-AIALAPGNYIEAQ 158 (168)
T ss_pred HHHHHHHHHHHHHh-----CcCc---HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHH-HHHhCcccHHHHH
Confidence 35688899999865 2332 233344454444 2478888888777766543222 2224555566665
Q ss_pred HHHH
Q 025497 229 LIMQ 232 (252)
Q Consensus 229 ~ilq 232 (252)
.-|.
T Consensus 159 ~~~~ 162 (168)
T CHL00033 159 NWLK 162 (168)
T ss_pred HHHH
Confidence 5443
No 31
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=51.41 E-value=59 Score=28.10 Aligned_cols=80 Identities=29% Similarity=0.402 Sum_probs=48.4
Q ss_pred chhhcccchhHHHHHHHHHHHHHHHHHHHhccCCCCCc---chHhHhhhHHHHHHHHhCChHHH---HHHHHHHHHHHHH
Q 025497 141 YMAEFKIGDERKAAAEDTMQSYKAAQDIAGADLAPTHP---IRLGLALNFSVFYYEILNQSDKA---CSMAKQAFEEAIA 214 (252)
Q Consensus 141 YlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~p---irLgL~LN~SVF~yei~~~~~~A---~~iak~afd~ai~ 214 (252)
-++-|..+.+.++..+.|..-|++|+.+- |..+ .-||.|+--=-|+. .+..+| .+.|...|+.|.+
T Consensus 37 ELAqfk~g~es~~miedAisK~eeAL~I~-----P~~hdAlw~lGnA~ts~A~l~---~d~~~A~~~F~kA~~~FqkAv~ 108 (186)
T PF06552_consen 37 ELAQFKQGPESKKMIEDAISKFEEALKIN-----PNKHDALWCLGNAYTSLAFLT---PDTAEAEEYFEKATEYFQKAVD 108 (186)
T ss_dssp HHHHHS-HHHHHHHHHHHHHHHHHHHHH------TT-HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCcchHHHHHHHHHHHHHHHHhcC-----CchHHHHHHHHHHHHHHHhhc---CChHHHHHHHHHHHHHHHHHHh
Confidence 35667888888889999999999998753 2222 45666665544533 445444 4566677888877
Q ss_pred hhcccCCCchHHHHHH
Q 025497 215 ELDTLGEESYKDSTLI 230 (252)
Q Consensus 215 ~ld~l~ee~~~ds~~i 230 (252)
. .-+.+.|+-+..+
T Consensus 109 ~--~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 109 E--DPNNELYRKSLEM 122 (186)
T ss_dssp H---TT-HHHHHHHHH
T ss_pred c--CCCcHHHHHHHHH
Confidence 4 3345667766543
No 32
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=50.62 E-value=1.3e+02 Score=24.07 Aligned_cols=166 Identities=15% Similarity=0.081 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhccCchhHHHH
Q 025497 12 EQYVYLAKLAEQAERYEEMVEFMQKLVVGSTPAAELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEEHVSL 91 (252)
Q Consensus 12 ~~l~~~Aklaeq~ery~Dm~~~mk~~~~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~ 91 (252)
.-...++...-..|+|+++++.+++.+. .. | -+..-...++..|-.. +....+...+........... ......
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~--~~-p-~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~~-~~~~~~ 105 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALE--HD-P-DDYLAYLALALYYQQL-GELEKAEDSFRRALTLNPNNG-DVLNNY 105 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--hC-c-ccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCH-HHHHHH
Confidence 4456778888889999999999999987 32 3 3444445555555433 444444444433222211110 111111
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHhHHhhhccccccchhhcccchhHHHHHHHHHHHHHHHHHHHh
Q 025497 92 VKEY-RSKVEKELSDVCASILRLLEANLIPSATASESKVFYLKMKGDYHRYMAEFKIGDERKAAAEDTMQSYKAAQDIAG 170 (252)
Q Consensus 92 i~~y-r~ki~~EL~~~C~eil~lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 170 (252)
..-| ...--++-...+..++.. |.. .....+ +.. .|..|. ..|+ .+.|...|++++..
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~------~~~-~~~~~~-~~~-l~~~~~-----~~g~-----~~~A~~~~~~~~~~-- 164 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIED------PLY-PQPARS-LEN-AGLCAL-----KAGD-----FDKAEKYLTRALQI-- 164 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhc------ccc-ccchHH-HHH-HHHHHH-----HcCC-----HHHHHHHHHHHHHh--
Confidence 1111 111112333344443321 110 011111 111 222221 1111 35578888888754
Q ss_pred ccCCCCCcchHhHhhhHHHHHHHHhCChHHHHHHHHHHHHH
Q 025497 171 ADLAPTHPIRLGLALNFSVFYYEILNQSDKACSMAKQAFEE 211 (252)
Q Consensus 171 ~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd~ 211 (252)
.|.+| ....+.+..++. .|+.++|+...+++.+.
T Consensus 165 ---~~~~~---~~~~~la~~~~~-~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 165 ---DPQRP---ESLLELAELYYL-RGQYKDARAYLERYQQT 198 (234)
T ss_pred ---CcCCh---HHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 23333 334455656555 79999999887776553
No 33
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=49.59 E-value=76 Score=21.12 Aligned_cols=44 Identities=16% Similarity=0.211 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchHhHhhhHHHHHHHHhCChHHHHHHHHHH
Q 025497 156 EDTMQSYKAAQDIAGADLAPTHPIRLGLALNFSVFYYEILNQSDKACSMAKQA 208 (252)
Q Consensus 156 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~a 208 (252)
+.|...|++++.. +|-...+.++++..|+. .|+.++|..+.++.
T Consensus 8 ~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 8 DEAIELLEKALQR--------NPDNPEARLLLAQCYLK-QGQYDEAEELLERL 51 (68)
T ss_dssp HHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCC
T ss_pred HHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence 5677888888753 34445555566777776 59999988876653
No 34
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=49.22 E-value=2.8e+02 Score=27.52 Aligned_cols=27 Identities=11% Similarity=-0.006 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 025497 13 QYVYLAKLAEQAERYEEMVEFMQKLVV 39 (252)
Q Consensus 13 ~l~~~Aklaeq~ery~Dm~~~mk~~~~ 39 (252)
-...++.+..+.|+|++++.++.+.++
T Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~a~~ 493 (899)
T TIGR02917 467 LHNLLGAIYLGKGDLAKAREAFEKALS 493 (899)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 455667777777777777777777665
No 35
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=48.34 E-value=3.9e+02 Score=28.93 Aligned_cols=26 Identities=27% Similarity=0.193 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhh
Q 025497 14 YVYLAKLAEQAERYEEMVEFMQKLVV 39 (252)
Q Consensus 14 l~~~Aklaeq~ery~Dm~~~mk~~~~ 39 (252)
.+.+|.+..+.|+|++++...++++.
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~ 537 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISL 537 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 45566666677777777777776554
No 36
>PRK12794 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=48.28 E-value=26 Score=28.08 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=36.4
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHhhHhhhhc
Q 025497 191 YYEILNQSDKACSMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTS 243 (252)
Q Consensus 191 ~yei~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~ilqlLrDNl~lW~~ 243 (252)
|-++......+.++=.++|..+...|....+..-.+....++-|..|-.+|+.
T Consensus 8 Y~~~~~~~~~~Re~E~~~l~~~~~~L~~a~~~~~~~~~~~~~AL~~NrrLWt~ 60 (122)
T PRK12794 8 YARAAQPTRTPRETEYQLLAKATRQLKDAQTNGPDRFAALAEALHFNRKLWSI 60 (122)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH
Confidence 44455555566666677788888777766554333336777999999999994
No 37
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=47.37 E-value=2.1e+02 Score=25.59 Aligned_cols=42 Identities=17% Similarity=-0.072 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 025497 12 EQYVYLAKLAEQAERYEEMVEFMQKLVVGSTPAAELTVEERNLL 55 (252)
Q Consensus 12 ~~l~~~Aklaeq~ery~Dm~~~mk~~~~~~~~~~~Lt~eERnLl 55 (252)
.-++++|.+....|++++.......+.. .....+|.=|+..+
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~ 48 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQ--ALAARATERERAHV 48 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHH--HhccCCCHHHHHHH
Confidence 3455666666666666666666655554 21134555455443
No 38
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=46.58 E-value=72 Score=27.10 Aligned_cols=73 Identities=19% Similarity=0.239 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025497 45 AELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEEHVSLVKEYRSKVEKELSDVCASILRLLEANL 118 (252)
Q Consensus 45 ~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yr~ki~~EL~~~C~eil~lid~~L 118 (252)
|++|.|-|.=|....|...-..|.+.|.+..--.+.- ++.......-++-.++.++++..+.++.+.-||..+
T Consensus 99 P~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~~~~~l-Kk~~k~~~iseD~~k~~~~~iqkltd~~i~~id~~~ 171 (179)
T cd00520 99 PPLTEERRKELVKDAKKIAEEAKVAIRNIRRDANDKI-KKLEKEKEISEDEVKKAEEDLQKLTDEYIKKIDELL 171 (179)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999888852111110 000000001233444556666666666666666543
No 39
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=45.79 E-value=87 Score=26.60 Aligned_cols=73 Identities=18% Similarity=0.244 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025497 45 AELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEEHVSLVKEYRSKVEKELSDVCASILRLLEANL 118 (252)
Q Consensus 45 ~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yr~ki~~EL~~~C~eil~lid~~L 118 (252)
|+||.|-|.=|....|...-..|.+.|-+..--.+.- +........-++-.++++++|..+.++.+.-||..+
T Consensus 94 P~lT~E~RkelvK~~k~~~E~aKv~iRniRr~~~~~i-Kk~~k~~~iseD~~k~~~~~iQkltd~~i~~id~~~ 166 (176)
T TIGR00496 94 PPLTEERRKELVKHAKKIAEQAKVAVRNVRRDANDKV-KKLEKDKEISEDEERRLQEEIQKLTDEYIKKIDEIL 166 (176)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999988852111100 000000001134445566666666666666666544
No 40
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=45.41 E-value=79 Score=25.53 Aligned_cols=50 Identities=20% Similarity=0.129 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchHhHhhhHHHHHHHHhCChHHHHHHHHHHHH
Q 025497 155 AEDTMQSYKAAQDIAGADLAPTHPIRLGLALNFSVFYYEILNQSDKACSMAKQAFE 210 (252)
Q Consensus 155 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd 210 (252)
.+.|...|++|+.+. |.++.......|.++.+.. +|+.++|+...++|+.
T Consensus 51 ~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~-~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 51 YAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTS-NGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 356888999998763 2233333345566555554 7999999999888774
No 41
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=44.70 E-value=92 Score=26.68 Aligned_cols=73 Identities=16% Similarity=0.193 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025497 45 AELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEEHVSLVKEYRSKVEKELSDVCASILRLLEANL 118 (252)
Q Consensus 45 ~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yr~ki~~EL~~~C~eil~lid~~L 118 (252)
|+||.|-|.=|....|...-.-|.+.|.+..--.+.-.+ .......-++-.++.++|+..+.++.+.-||..+
T Consensus 103 P~lT~E~R~elvK~~k~~~E~aKv~iRniRr~~~~~iKk-~~k~~~iseD~~k~~e~eiQkltd~~i~~id~~~ 175 (185)
T PRK00083 103 PPLTEERRKELVKQVKKEAEEAKVAIRNIRRDANDKLKK-LEKDKEISEDELKRAEDEIQKLTDKYIKKIDELL 175 (185)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999988999999886321111000 0000001133444566666666666666666543
No 42
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=43.91 E-value=3.9e+02 Score=27.64 Aligned_cols=55 Identities=20% Similarity=0.208 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 025497 14 YVYLAKLAEQAERYEEMVEFMQKLVVGSTPAAELTVEERNLLSVAYKNVIGSLRAAWRIVS 74 (252)
Q Consensus 14 l~~~Aklaeq~ery~Dm~~~mk~~~~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~ 74 (252)
...+|.+.-..|++++++..+++++. .. |+ +.+ ...+..++.. .+....+...+.
T Consensus 86 ~~~la~~l~~~g~~~eA~~~l~~~l~--~~-P~-~~~-~~~la~~l~~-~g~~~~Al~~l~ 140 (765)
T PRK10049 86 QRGLILTLADAGQYDEALVKAKQLVS--GA-PD-KAN-LLALAYVYKR-AGRHWDELRAMT 140 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hC-CC-CHH-HHHHHHHHHH-CCCHHHHHHHHH
Confidence 44555555556666666666666655 22 22 222 4455555543 244445554444
No 43
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=42.55 E-value=84 Score=26.36 Aligned_cols=72 Identities=15% Similarity=0.171 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCcchHhHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCCC--chHHHHH
Q 025497 152 KAAAEDTMQSYKAAQDIAGADLAPTHPIRLGLALNFSVFYYEILNQSDKACSMAKQAFEEAIAELDTLGEE--SYKDSTL 229 (252)
Q Consensus 152 ~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd~ai~~ld~l~ee--~~~ds~~ 229 (252)
..--+.|.++|..|..+. |.||- ...|.++-+. .+|+.+.|+ ++|+.|+.--...++. -..-+..
T Consensus 82 ~g~~~~AI~aY~~A~~L~-----~ddp~---~~~~ag~c~L-~lG~~~~A~----~aF~~Ai~~~~~~~~~~~l~~~A~~ 148 (157)
T PRK15363 82 QKHWGEAIYAYGRAAQIK-----IDAPQ---APWAAAECYL-ACDNVCYAI----KALKAVVRICGEVSEHQILRQRAEK 148 (157)
T ss_pred HhhHHHHHHHHHHHHhcC-----CCCch---HHHHHHHHHH-HcCCHHHHH----HHHHHHHHHhccChhHHHHHHHHHH
Confidence 334577899999988644 44442 1334444444 368888765 5788888766544332 1233555
Q ss_pred HHHHHHh
Q 025497 230 IMQLLRD 236 (252)
Q Consensus 230 ilqlLrD 236 (252)
.+..|.|
T Consensus 149 ~L~~l~~ 155 (157)
T PRK15363 149 MLQQLSD 155 (157)
T ss_pred HHHHhhc
Confidence 6665554
No 44
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=41.64 E-value=1.2e+02 Score=21.96 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchHhHhhhHHHHHHHHhCChHHHHHHHHHHHHH
Q 025497 156 EDTMQSYKAAQDIAGADLAPTHPIRLGLALNFSVFYYEILNQSDKACSMAKQAFEE 211 (252)
Q Consensus 156 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd~ 211 (252)
+.|.+.|+.+.. +.|.||......++.+..++. +|+.++|+....++++.
T Consensus 56 ~~A~~~~~~~~~-----~~p~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 56 ADAAKAFLAVVK-----KYPKSPKAPDALLKLGMSLQE-LGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHHH-----HCCCCCcccHHHHHHHHHHHH-hCChHHHHHHHHHHHHH
Confidence 457788888775 346666544445555555554 79999999887776665
No 45
>PRK12793 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=40.37 E-value=35 Score=27.10 Aligned_cols=52 Identities=27% Similarity=0.344 Sum_probs=41.5
Q ss_pred HHHHhCChH-HHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHhhHhhhhc
Q 025497 191 YYEILNQSD-KACSMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTS 243 (252)
Q Consensus 191 ~yei~~~~~-~A~~iak~afd~ai~~ld~l~ee~~~ds~~ilqlLrDNl~lW~~ 243 (252)
|-+++.+.. .+.++=.++|..+...|....+..- ++...++-|..|-.+|+.
T Consensus 6 Ya~~~~~s~~~~R~~E~~~l~r~~~~L~~a~~~~~-~~~~~~eAL~~NrrLWt~ 58 (115)
T PRK12793 6 YAEVMEDSVASARERERQAFDRSIDLLEAARAKGA-YSREAIEALYFTRRLWTV 58 (115)
T ss_pred HHHHHHHcccChHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHH
Confidence 666777666 7778888899999988877666544 777888999999999994
No 46
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=40.16 E-value=46 Score=31.14 Aligned_cols=48 Identities=23% Similarity=0.353 Sum_probs=40.1
Q ss_pred HHHHHhCChHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHhhHhhhhc
Q 025497 190 FYYEILNQSDKACSMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTS 243 (252)
Q Consensus 190 F~yei~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~ilqlLrDNl~lW~~ 243 (252)
.|-+ .|.+..|+++.+.+. .+|.|+|++++.-+.++-.++||+..=++
T Consensus 288 ~yle-~g~~neAi~l~qr~l-----tldpL~e~~nk~lm~~la~~gD~is~~kh 335 (361)
T COG3947 288 AYLE-AGKPNEAIQLHQRAL-----TLDPLSEQDNKGLMASLATLGDEISAIKH 335 (361)
T ss_pred HHHH-cCChHHHHHHHHHHh-----hcChhhhHHHHHHHHHHHHhccchhhhhH
Confidence 3444 599999999999875 37889999999999999999999876543
No 47
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=39.26 E-value=44 Score=22.32 Aligned_cols=53 Identities=21% Similarity=0.400 Sum_probs=29.0
Q ss_pred HhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Q 025497 23 QAERYEEMVEFMQKLVVGSTPAAELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKE 80 (252)
Q Consensus 23 q~ery~Dm~~~mk~~~~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~ 80 (252)
+.|+|++++..+++++. .. |. +.+=+-.+..+|-.. |..-.|-+++..+....
T Consensus 3 ~~~~~~~A~~~~~~~l~--~~-p~-~~~~~~~la~~~~~~-g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQ--RN-PD-NPEARLLLAQCYLKQ-GQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHH--HT-TT-SHHHHHHHHHHHHHT-T-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHH--HC-CC-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHC
Confidence 34666666666666665 22 33 556555555555544 55555666665554443
No 48
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=38.23 E-value=55 Score=23.21 Aligned_cols=43 Identities=12% Similarity=0.164 Sum_probs=19.9
Q ss_pred HHHHHHHHhccCCCCCcchHhHhhhHHHHHHHHhCChHHHHHHHHH
Q 025497 162 YKAAQDIAGADLAPTHPIRLGLALNFSVFYYEILNQSDKACSMAKQ 207 (252)
Q Consensus 162 Y~~A~~~a~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~ 207 (252)
|++|+++.+. .+.+|..+....-++--++ -+|+.++|+..-++
T Consensus 41 y~~A~~~~~~--~~~~~~~~~~~~l~a~~~~-~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 41 YEEAIELLQK--LKLDPSNPDIHYLLARCLL-KLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHC--HTHHHCHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCCCCHHHHHHHHHHHH-HhCCHHHHHHHHhc
Confidence 4445554433 3333333343443333333 36777777766544
No 49
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=37.81 E-value=1.3e+02 Score=24.42 Aligned_cols=49 Identities=22% Similarity=0.327 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchHhHhhhHHHHHHHHhCChHHHHHHHHHHHH
Q 025497 156 EDTMQSYKAAQDIAGADLAPTHPIRLGLALNFSVFYYEILNQSDKACSMAKQAFE 210 (252)
Q Consensus 156 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd 210 (252)
+.|...|++|+.+.. .+|-..-...|.++-++. +|+.++|+...++|++
T Consensus 52 ~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 52 AEALENYEEALKLEE-----DPNDRSYILYNMGIIYAS-NGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 467888998887642 222223345566665555 7999999998887766
No 50
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=37.00 E-value=65 Score=26.60 Aligned_cols=61 Identities=25% Similarity=0.260 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhccCCCCCcchHhHhhhH-HHHH-HHH--hCChHHHHHHHHHHHHHHHHhhcc
Q 025497 158 TMQSYKAAQDIAGADLAPTHPIRLGLALNF-SVFY-YEI--LNQSDKACSMAKQAFEEAIAELDT 218 (252)
Q Consensus 158 a~~aY~~A~~~a~~~L~pt~pirLgL~LN~-SVF~-yei--~~~~~~A~~iak~afd~ai~~ld~ 218 (252)
...+|-+++.-....++...|+.++..|.+ .||. .+- ....+..-.....++++|++.+..
T Consensus 83 l~~~y~~~l~~l~~~~~~~~~~~~~~ll~~p~v~~~~~~~~~~~~e~~~~~l~~~l~~AL~~l~~ 147 (159)
T PF03755_consen 83 LAKAYYEALKELAEELGLAGPISLDDLLRLPGVLKVEEEEDEEEEEELWEALLEALEEALDELIA 147 (159)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCHHHHHcCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666655567888889999999998 5665 221 112233457788999999987764
No 51
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=33.40 E-value=73 Score=16.26 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhh
Q 025497 14 YVYLAKLAEQAERYEEMVEFMQKLVV 39 (252)
Q Consensus 14 l~~~Aklaeq~ery~Dm~~~mk~~~~ 39 (252)
+..+|.+..+.++|++++.++.+.+.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 45678888889999999999998876
No 52
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=33.13 E-value=5.4e+02 Score=26.99 Aligned_cols=40 Identities=20% Similarity=0.387 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchHh-HhhhHHHHHHHH
Q 025497 155 AEDTMQSYKAAQDIAGADLAPTHPIRLG-LALNFSVFYYEI 194 (252)
Q Consensus 155 ~~~a~~aY~~A~~~a~~~L~pt~pirLg-L~LN~SVF~yei 194 (252)
-++..+|-|+|+.+|...+.|.-.+-|= =+||..+|||+-
T Consensus 701 ~krVlECLQKaLriAds~md~~~~~~LfveILn~ylyf~~~ 741 (762)
T PF03635_consen 701 GKRVLECLQKALRIADSCMDPSQSVQLFVEILNRYLYFFEK 741 (762)
T ss_dssp HHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHhhhc
Confidence 4678999999999999888855444443 379999999963
No 53
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=32.82 E-value=1.5e+02 Score=19.58 Aligned_cols=53 Identities=19% Similarity=0.132 Sum_probs=34.5
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHhhhhhhHHHHHH
Q 025497 16 YLAKLAEQAERYEEMVEFMQKLVVGSTPAAELTVEERNLLSVAYKNVIGSLRAAWRIV 73 (252)
Q Consensus 16 ~~Aklaeq~ery~Dm~~~mk~~~~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l 73 (252)
-+|...-+.|+|++++..+++++. .. +-+.+=+..+..++- ..+....|...+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~--~~--P~~~~a~~~lg~~~~-~~g~~~~A~~~~ 54 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALK--QD--PDNPEAWYLLGRILY-QQGRYDEALAYY 54 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHC--CS--TTHHHHHHHHHHHHH-HTT-HHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHH--HC--CCCHHHHHHHHHHHH-HcCCHHHHHHHH
Confidence 467888899999999999999997 32 335555555555554 334444444443
No 54
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=31.73 E-value=1.6e+02 Score=19.59 Aligned_cols=46 Identities=26% Similarity=0.398 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHH
Q 025497 12 EQYVYLAKLAEQAERYEEMVEFMQKLVVGSTPAAELTVEERNLLSVAYKN 61 (252)
Q Consensus 12 ~~l~~~Aklaeq~ery~Dm~~~mk~~~~~~~~~~~Lt~eERnLls~ayKn 61 (252)
+.+..+|.++-+.|+|++++.++++.++ .+ |. +.+=..-++.+|..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~-p~-~~~~~~~~g~~~~~ 49 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIE--LD-PN-NAEAYYNLGLAYMK 49 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHH--HS-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--cC-CC-CHHHHHHHHHHHHH
Confidence 3466789999999999999999999998 43 33 33333444444433
No 55
>COG4499 Predicted membrane protein [Function unknown]
Probab=30.43 E-value=1e+02 Score=29.79 Aligned_cols=47 Identities=28% Similarity=0.390 Sum_probs=39.5
Q ss_pred HhHhhhHHHHHHHHhCChHHHHHHHHHHH-----HHHHHhhcccCCCchHHH
Q 025497 181 LGLALNFSVFYYEILNQSDKACSMAKQAF-----EEAIAELDTLGEESYKDS 227 (252)
Q Consensus 181 LgL~LN~SVF~yei~~~~~~A~~iak~af-----d~ai~~ld~l~ee~~~ds 227 (252)
|-+++=|++|+|-+..-.+.||.-|.+|| ++.+..++.+|.++.+.+
T Consensus 231 lvl~li~~~Y~~f~~~p~qeai~~a~~aFL~~nY~qVittLe~ydp~klPks 282 (434)
T COG4499 231 LVLLLIYFTYYYFSNQPKQEAIITANTAFLKNNYDQVITTLENYDPEKLPKS 282 (434)
T ss_pred HHHHHHHHHHHHHHcChhHHHHHHHHHHHHhccHHHHhhhcccCChhhCcHH
Confidence 44678899999999999999999999995 789999998887765544
No 56
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=28.92 E-value=1.5e+02 Score=27.69 Aligned_cols=46 Identities=22% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchHhHhhhHHHHHHHHhCChHHHHHHHHHHHH
Q 025497 156 EDTMQSYKAAQDIAGADLAPTHPIRLGLALNFSVFYYEILNQSDKACSMAKQAFE 210 (252)
Q Consensus 156 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd 210 (252)
+.|.+.|++|+.+. |-...+.+|.+..|.. +|+.+.|+..+.+|++
T Consensus 19 ~~Ai~~~~~Al~~~--------P~~~~a~~~~a~~~~~-~g~~~eAl~~~~~Al~ 64 (356)
T PLN03088 19 ALAVDLYTQAIDLD--------PNNAELYADRAQANIK-LGNFTEAVADANKAIE 64 (356)
T ss_pred HHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
No 57
>PRK15331 chaperone protein SicA; Provisional
Probab=28.71 E-value=2.6e+02 Score=23.64 Aligned_cols=71 Identities=14% Similarity=0.121 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCcchHhHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHH
Q 025497 154 AAEDTMQSYKAAQDIAGADLAPTHPIRLGLALNFSVFYYEILNQSDKACSMAKQAFEEAIAELDTLGEESYKDSTLIMQL 233 (252)
Q Consensus 154 ~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~ilql 233 (252)
--++|.++|--|.-+... .|.-|.+.|. .|=.+|++.+|.. +|..|+..-. ..+-..-+...+..
T Consensus 86 ~y~~Ai~~Y~~A~~l~~~--dp~p~f~agq-------C~l~l~~~~~A~~----~f~~a~~~~~--~~~l~~~A~~~L~~ 150 (165)
T PRK15331 86 QFQKACDLYAVAFTLLKN--DYRPVFFTGQ-------CQLLMRKAAKARQ----CFELVNERTE--DESLRAKALVYLEA 150 (165)
T ss_pred HHHHHHHHHHHHHHcccC--CCCccchHHH-------HHHHhCCHHHHHH----HHHHHHhCcc--hHHHHHHHHHHHHH
Confidence 346677777777766543 3333555553 3445799988876 7888877311 11223336677777
Q ss_pred HHhhHh
Q 025497 234 LRDNLT 239 (252)
Q Consensus 234 LrDNl~ 239 (252)
|..|.+
T Consensus 151 l~~~~~ 156 (165)
T PRK15331 151 LKTAET 156 (165)
T ss_pred HHcccc
Confidence 776643
No 58
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=28.05 E-value=1e+02 Score=21.74 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=12.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHH
Q 025497 15 VYLAKLAEQAERYEEMVEFMQK 36 (252)
Q Consensus 15 ~~~Aklaeq~ery~Dm~~~mk~ 36 (252)
..+|+...+.|+|+++++.+++
T Consensus 62 ~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 62 YLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHhc
Confidence 3446666666666666666543
No 59
>PF11568 Med29: Mediator complex subunit 29; InterPro: IPR021018 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med29, along with Med11 and Med28, in mammals, is part of the core head-region of the complex. Med29 is the apparent orthologue of the Drosophila melanogaster Intersex protein, which interacts directly with, and functions as a transcriptional coactivator for, the DNA-binding transcription factor Doublesex, so it is likely that mammalian Med29 serves as a target for one or more DNA-binding transcriptional activators []. ; GO: 0016592 mediator complex
Probab=27.92 E-value=1.7e+02 Score=24.39 Aligned_cols=50 Identities=22% Similarity=0.517 Sum_probs=29.8
Q ss_pred HHHHhhhhhhHHHHHHH-----HHhhh------hhccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025497 58 AYKNVIGSLRAAWRIVS-----SIEQK------EEGRKNEEHVSLVKEYRSKVEKELSDVCASIL 111 (252)
Q Consensus 58 ayKn~i~~~R~s~R~l~-----~ieqk------~~~~~~~~~~~~i~~yr~ki~~EL~~~C~eil 111 (252)
=+|++|++.|.||..+. .+.|+ ...++.+.. ..+|.+.+ +|...+|+.|-
T Consensus 9 kvK~Lv~~LreSl~~~~k~AA~~l~qn~~~D~g~~~~~~d~~---~~RFdK~l-EeFysiCDQIE 69 (148)
T PF11568_consen 9 KVKSLVGPLRESLSNLMKTAAQNLQQNSLVDNGTRGKSSDEP---VPRFDKNL-EEFYSICDQIE 69 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCc---HHHHHHHH-HHHHHHHHHHH
Confidence 36888888999988775 24444 112222222 23455444 67888998764
No 60
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=27.77 E-value=5e+02 Score=24.10 Aligned_cols=136 Identities=13% Similarity=0.136 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHhHHhhhccccccchhhcccchhHHH-HHHHHHHHHHHHH
Q 025497 88 HVSLVKEYRSKVEKELSDVCASILRLLEANLIPSATASESKVFYLKMKGDYHRYMAEFKIGDERKA-AAEDTMQSYKAAQ 166 (252)
Q Consensus 88 ~~~~i~~yr~ki~~EL~~~C~eil~lid~~Lip~~~~~eskVfy~KmkgDyyRYlaE~~~~~~~~~-~~~~a~~aY~~A~ 166 (252)
.+..|+.-|.+++.+|..--.+|...|=..+-....-.+..+|--.++--|-.+...+...-.++. ....-..++.+-.
T Consensus 199 ~l~~lk~eR~~~~~~Lk~~~dDI~~~ll~~~~~~~~~~~e~l~~~eL~k~f~~~~~~i~~~~~~Q~~ll~~i~~~n~~f~ 278 (339)
T cd09235 199 QVETIKAEREVIESELKSATFDMKSKFLSALAQDGAINEEAISVEELDRVYGPLQKQVQESLSRQESLLANIQVAHQEFS 278 (339)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHhcCCccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888888876655555444332211111122344444442113333333333322222 2222222222221
Q ss_pred HHHhccCCCCCcchHhHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCC--CchHHHHHHHHHHHhhHhhhhc
Q 025497 167 DIAGADLAPTHPIRLGLALNFSVFYYEILNQSDKACSMAKQAFEEAIAELDTLGE--ESYKDSTLIMQLLRDNLTLWTS 243 (252)
Q Consensus 167 ~~a~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd~ai~~ld~l~e--e~~~ds~~ilqlLrDNl~lW~~ 243 (252)
. .... . ..-+..+.+++--..||+.-..-...+.+ ..|.|-+.++.-++.++.-|..
T Consensus 279 ~-~~~~-~------------------~~~~~re~~lq~L~~Ay~~y~el~~nl~eG~kFY~dL~~~~~~~~~~~~~fv~ 337 (339)
T cd09235 279 K-EKQS-N------------------SGANEREEVLKDLAAAYDAFMELTANLKEGTKFYNDLTEILVKFQNKCSDFVF 337 (339)
T ss_pred H-Hhcc-c------------------chhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1110 0 01234456666666666544444444444 6799999999999999998864
No 61
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=27.22 E-value=87 Score=32.00 Aligned_cols=47 Identities=17% Similarity=0.192 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchHhHhhhHHHHHHHHhCChHHHHHHHHHHHH
Q 025497 155 AEDTMQSYKAAQDIAGADLAPTHPIRLGLALNFSVFYYEILNQSDKACSMAKQAFE 210 (252)
Q Consensus 155 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd 210 (252)
-+.|+-.|++|++ +||.-.-+.--...++.. +|..++|+++-++|+-
T Consensus 505 ~e~Ae~~fqkA~~--------INP~nsvi~~~~g~~~~~-~k~~d~AL~~~~~A~~ 551 (638)
T KOG1126|consen 505 LEFAEFHFQKAVE--------INPSNSVILCHIGRIQHQ-LKRKDKALQLYEKAIH 551 (638)
T ss_pred hhHHHHHHHhhhc--------CCccchhHHhhhhHHHHH-hhhhhHHHHHHHHHHh
Confidence 4445555555553 455555555556666665 7999999999998864
No 62
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=27.10 E-value=1.2e+02 Score=20.44 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=12.6
Q ss_pred HHHHHhcCHHHHHHHHHHHhh
Q 025497 19 KLAEQAERYEEMVEFMQKLVV 39 (252)
Q Consensus 19 klaeq~ery~Dm~~~mk~~~~ 39 (252)
.++-+.++|+.+++++..++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~ 23 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALE 23 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHH
Confidence 445555666666666666665
No 63
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=26.69 E-value=8.6e+02 Score=26.48 Aligned_cols=27 Identities=30% Similarity=0.258 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 025497 13 QYVYLAKLAEQAERYEEMVEFMQKLVV 39 (252)
Q Consensus 13 ~l~~~Aklaeq~ery~Dm~~~mk~~~~ 39 (252)
..+.+|++.-..|+|++++..+++++.
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~ 140 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFN 140 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHcc
Confidence 357889999999999999999999987
No 64
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=26.30 E-value=4.9e+02 Score=23.49 Aligned_cols=24 Identities=21% Similarity=0.104 Sum_probs=12.0
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhh
Q 025497 16 YLAKLAEQAERYEEMVEFMQKLVV 39 (252)
Q Consensus 16 ~~Aklaeq~ery~Dm~~~mk~~~~ 39 (252)
.++.+..+.|+|+++..+++++.+
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~ 135 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVD 135 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHc
Confidence 344444445555555555555443
No 65
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=26.23 E-value=7.5e+02 Score=25.64 Aligned_cols=28 Identities=21% Similarity=0.159 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 025497 12 EQYVYLAKLAEQAERYEEMVEFMQKLVV 39 (252)
Q Consensus 12 ~~l~~~Aklaeq~ery~Dm~~~mk~~~~ 39 (252)
+-+.-+|.+..+.|||+|.......+++
T Consensus 87 ~~~~~La~i~~~~g~~~ea~~~l~~~~~ 114 (694)
T PRK15179 87 LFQVLVARALEAAHRSDEGLAVWRGIHQ 114 (694)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 4567889999999999999999999988
No 66
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.15 E-value=4e+02 Score=22.45 Aligned_cols=34 Identities=15% Similarity=0.276 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHhhhh
Q 025497 29 EMVEFMQKLVVGSTPAAELTVEERNLLSVAYKNVIGS 65 (252)
Q Consensus 29 Dm~~~mk~~~~~~~~~~~Lt~eERnLls~ayKn~i~~ 65 (252)
..++..+++++ .. .+||.+|++.|..+...++-.
T Consensus 83 ~~L~aa~el~e--e~-eeLs~deke~~~~sl~dL~~d 116 (158)
T PF10083_consen 83 NALEAANELIE--ED-EELSPDEKEQFKESLPDLTKD 116 (158)
T ss_pred HHHHHHHHHHH--Hh-hcCCHHHHHHHHhhhHHHhhc
Confidence 45667778887 33 899999999999999888753
No 67
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=24.78 E-value=9.3e+02 Score=26.22 Aligned_cols=57 Identities=12% Similarity=-0.102 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHh
Q 025497 16 YLAKLAEQAERYEEMVEFMQKLVVGSTPAAELTVEERNLLSVAYKNVIGSLRAAWRIVSSIE 77 (252)
Q Consensus 16 ~~Aklaeq~ery~Dm~~~mk~~~~~~~~~~~Lt~eERnLls~ayKn~i~~~R~s~R~l~~ie 77 (252)
.++.++-..|+|++++..+++++. .+ |. +..=...|..+|.. .+....|.+.+....
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~--~~-P~-~~~a~~~Lg~~~~~-~g~~~eA~~~y~~aL 412 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQ--VD-NT-DSYAVLGLGDVAMA-RKDYAAAERYYQQAL 412 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hC-CC-CHHHHHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence 446667778999999999999998 43 43 23334445555532 355566666665433
No 68
>KOG0570 consensus Transcriptional coactivator [Transcription]
Probab=24.75 E-value=4.1e+02 Score=23.39 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhhhhh-----hHHHHHHHH
Q 025497 50 EERNLLSVAYKNVIGSL-----RAAWRIVSS 75 (252)
Q Consensus 50 eERnLls~ayKn~i~~~-----R~s~R~l~~ 75 (252)
|+-..+-+-..++|+.+ |.|+|+|..
T Consensus 109 edi~tifvnlHHLiNeyRPhQaResLi~lmE 139 (223)
T KOG0570|consen 109 EDIRTIFVNLHHLINEYRPHQARESLIMLME 139 (223)
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 35566777888999876 578888863
No 69
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=24.23 E-value=1.3e+02 Score=19.59 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 025497 15 VYLAKLAEQAERYEEMVEFMQKLVVGSTPAAELTVEERNLLS 56 (252)
Q Consensus 15 ~~~Aklaeq~ery~Dm~~~mk~~~~~~~~~~~Lt~eERnLls 56 (252)
+-+|+..-..|.++.+.+.+.+++. .+.++...+-+.||.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~--~~~~~q~~eA~~LL~ 42 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE--EGDEAQRQEARALLA 42 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH--cCCHHHHHHHHHHHh
Confidence 4578999999999999999999996 332444455555553
No 70
>PF07309 FlaF: Flagellar protein FlaF; InterPro: IPR010845 This family consists of several bacterial FlaF flagellar proteins. FlaF and FlaG are trans-acting, regulatory factors that modulate flagellin synthesis during flagellum biogenesis [].
Probab=24.15 E-value=89 Score=24.58 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=28.6
Q ss_pred CChHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHHhhHhhhhc
Q 025497 196 NQSDKACSMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTS 243 (252)
Q Consensus 196 ~~~~~A~~iak~afd~ai~~ld~l~ee~~~ds~~ilqlLrDNl~lW~~ 243 (252)
+......++=..+|..+...|....+..-. +..-++-|.+|..+|+.
T Consensus 11 ~~~~~~Re~E~~~l~~a~~~L~~A~~~~~~-~~~~~~AL~~N~rLW~~ 57 (113)
T PF07309_consen 11 QSTRSPREIEARALARAARRLERAREAGPR-SREALEALHFNRRLWTI 57 (113)
T ss_pred HhcCChHHHHHHHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHH
Confidence 334444555556677777766655432222 22323999999999994
No 71
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=23.88 E-value=3.9e+02 Score=21.54 Aligned_cols=13 Identities=15% Similarity=0.537 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHH
Q 025497 156 EDTMQSYKAAQDI 168 (252)
Q Consensus 156 ~~a~~aY~~A~~~ 168 (252)
+.|..+|++|+.+
T Consensus 89 ~~A~~~~~~al~~ 101 (172)
T PRK02603 89 DKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHHh
Confidence 5688889998875
No 72
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=23.87 E-value=5.2e+02 Score=23.63 Aligned_cols=85 Identities=16% Similarity=0.256 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHhcc----------CCCCCcchHhHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHhhcccCCCch
Q 025497 155 AEDTMQSYKAAQDIAGAD----------LAPTHPIRLGLALNFSVFYYEILNQSDKACSMAKQAFEEAIAELDTLGEESY 224 (252)
Q Consensus 155 ~~~a~~aY~~A~~~a~~~----------L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd~ai~~ld~l~ee~~ 224 (252)
+....+.|.+++...... .+.+.-..|-+.+++++|..+ .|..+.|+.+.|..++-..-.=+.+.....
T Consensus 118 v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~-aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~ 196 (321)
T PF08424_consen 118 VSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQ-AGYTERAVALWQALLEFNFFRPESLSSSSF 196 (321)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHH-CCchHHHHHHHHHHHHHHcCCccccccccH
Confidence 344566666666655432 333456888999999999999 599999999999888766632222222221
Q ss_pred HHHHHHHHHHHhhHhhhhcccc
Q 025497 225 KDSTLIMQLLRDNLTLWTSDVQ 246 (252)
Q Consensus 225 ~ds~~ilqlLrDNl~lW~~e~~ 246 (252)
. +.++.=-.=|.++.+
T Consensus 197 ~------~~~~~fe~FWeS~vp 212 (321)
T PF08424_consen 197 S------ERLESFEEFWESEVP 212 (321)
T ss_pred H------HHHHHHHHHhCcCCC
Confidence 1 333444467887655
No 73
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=23.69 E-value=5.1e+02 Score=23.27 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 025497 13 QYVYLAKLAEQAERYEEMVEFMQKLVV 39 (252)
Q Consensus 13 ~l~~~Aklaeq~ery~Dm~~~mk~~~~ 39 (252)
-++-+|.+.++.+.|+++++-.|++.+
T Consensus 170 Al~RRAeayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 170 ALERRAEAYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 455678899999999999999999887
No 74
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=23.62 E-value=3.8e+02 Score=21.28 Aligned_cols=65 Identities=17% Similarity=0.229 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025497 47 LTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEEHVSLVKEYRSKVEKELSDVCASIL 111 (252)
Q Consensus 47 Lt~eERnLls~ayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yr~ki~~EL~~~C~eil 111 (252)
||.+|-|-+--..+.++...+...+.+..+.+..............+...+.+..++....++|-
T Consensus 3 FTl~EA~~lLP~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 67 (120)
T PF09969_consen 3 FTLEEANALLPLLRPILEEIRELKAELEELEERLQELEDSLEVNGLEAELEELEARLRELIDEIE 67 (120)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 68888888888888888888888888877755432221111223344455566666666666654
No 75
>KOG1107 consensus Membrane coat complex Retromer, subunit VPS35 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.45 E-value=1.8e+02 Score=30.12 Aligned_cols=43 Identities=23% Similarity=0.303 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchH-hHhhhHHHHHHHHhCC
Q 025497 155 AEDTMQSYKAAQDIAGADLAPTHPIRL-GLALNFSVFYYEILNQ 197 (252)
Q Consensus 155 ~~~a~~aY~~A~~~a~~~L~pt~pirL-gL~LN~SVF~yei~~~ 197 (252)
-++..+|+++|+.+|.+.+.|+-++-| -=+||--.|+||--++
T Consensus 656 GkRVleCLkkAlkIA~qcmd~~~~vqLFIEILnrYiYfyek~n~ 699 (760)
T KOG1107|consen 656 GKRVLECLKKALKIAQQCMDNLRQVQLFIEILNRYIYFYEKGND 699 (760)
T ss_pred hHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhcCCC
Confidence 456789999999999999999988777 4588988999986443
No 76
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=23.34 E-value=6.2e+02 Score=23.68 Aligned_cols=180 Identities=11% Similarity=0.121 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCCCCCCCHHHHH----------HHHHHHHHhhhhhhHHHHHHHH
Q 025497 6 PDNLTREQYVYLAKLAEQAERYEEMVEFMQKLVVGSTPAAELTVEERN----------LLSVAYKNVIGSLRAAWRIVSS 75 (252)
Q Consensus 6 ~~~~~r~~l~~~Aklaeq~ery~Dm~~~mk~~~~~~~~~~~Lt~eERn----------Lls~ayKn~i~~~R~s~R~l~~ 75 (252)
|+. ..-+-.++.+.-+.|+|+++++.+.++.. ...++++++. +-...-..-.......|+.+..
T Consensus 184 P~~--~~al~ll~~~~~~~gdw~~a~~~l~~l~k----~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~ 257 (398)
T PRK10747 184 PRH--PEVLRLAEQAYIRTGAWSSLLDILPSMAK----AHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSR 257 (398)
T ss_pred CCC--HHHHHHHHHHHHHHHhHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCH
Q ss_pred HhhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHhHHhhh-ccccccchhhc------ccc
Q 025497 76 IEQKEEGRKNEEHVSLVKEYRSKVEKELSDVCASILRLLEANLIPSATASESKVFYLKM-KGDYHRYMAEF------KIG 148 (252)
Q Consensus 76 ieqk~~~~~~~~~~~~i~~yr~ki~~EL~~~C~eil~lid~~Lip~~~~~eskVfy~Km-kgDyyRYlaE~------~~~ 148 (252)
-..+. ..-......-+.. ..-..+...++.+.+- ...+++.-.+|-.+ .||+-+-+.-+ .++
T Consensus 258 ~~~~~----~~~~~~~A~~l~~------~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 258 KTRHQ----VALQVAMAEHLIE------CDDHDTAQQIILDGLK-RQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HHhCC----HHHHHHHHHHHHH------CCCHHHHHHHHHHHHh-cCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCC
Q ss_pred hh-----------HHHHHHHHHHHHHHHHHHHhccCCCCCcchHhHhhhHHHHHHHHhCChHHHHHHHHHHHHHH
Q 025497 149 DE-----------RKAAAEDTMQSYKAAQDIAGADLAPTHPIRLGLALNFSVFYYEILNQSDKACSMAKQAFEEA 212 (252)
Q Consensus 149 ~~-----------~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd~a 212 (252)
+. +.+--.+|.+.|+.+++. .|+++..+-|+.= ++-.|++++|++.-+++..-+
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~-----~P~~~~~~~La~~-----~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ-----RPDAYDYAWLADA-----LDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHhhh
No 77
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=22.95 E-value=1.6e+02 Score=20.35 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=18.4
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhh
Q 025497 15 VYLAKLAEQAERYEEMVEFMQKLVV 39 (252)
Q Consensus 15 ~~~Aklaeq~ery~Dm~~~mk~~~~ 39 (252)
+....-.=|.|+|+++.+++++++.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444445578999999999999885
No 78
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=22.75 E-value=1.7e+02 Score=31.46 Aligned_cols=52 Identities=17% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhc--cCCCCCcchHhHhhhHHHHHHHHhCChHHHHHHHHHHHHHHHHh
Q 025497 160 QSYKAAQDIAGA--DLAPTHPIRLGLALNFSVFYYEILNQSDKACSMAKQAFEEAIAE 215 (252)
Q Consensus 160 ~aY~~A~~~a~~--~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd~ai~~ 215 (252)
++|+.|+.+-.. ...|.||.-|...-||=+| -||.+.++.+|-.|+..+...
T Consensus 250 ~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyf----K~dy~~v~~la~~ai~~t~~~ 303 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKENNENPVALNHLANHFYF----KKDYERVWHLAEHAIKNTENK 303 (1018)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhh----cccHHHHHHHHHHHHHhhhhh
No 79
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=22.21 E-value=3.7e+02 Score=25.65 Aligned_cols=77 Identities=17% Similarity=0.345 Sum_probs=49.3
Q ss_pred ccccccchhhccc---chhH----HHHHHHHHHHHHHHHHHHhccCCCCCcchHhHhhhHHHHHHHHhCChHHHHHHHHH
Q 025497 135 KGDYHRYMAEFKI---GDER----KAAAEDTMQSYKAAQDIAGADLAPTHPIRLGLALNFSVFYYEILNQSDKACSMAKQ 207 (252)
Q Consensus 135 kgDyyRYlaE~~~---~~~~----~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~ 207 (252)
-++||.|+||-.. +... .+.-+.=.+-..++.+-|.+++..+ -+| ...+|-+-||-.| ||++.|.+..+.
T Consensus 53 Map~Ye~lce~~~i~~D~~~l~~m~~~neeki~eld~~iedaeenlGE~-ev~-ea~~~kaeYycqi-gDkena~~~~~~ 129 (393)
T KOG0687|consen 53 MAPLYEYLCESLVIKLDQDLLNSMKKANEEKIKELDEKIEDAEENLGES-EVR-EAMLRKAEYYCQI-GDKENALEALRK 129 (393)
T ss_pred cchHHHHHHhhcceeccHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchH-HHH-HHHHHHHHHHHHh-ccHHHHHHHHHH
Confidence 4778888888332 2111 1122222334556666666665543 333 3457777777776 999999999999
Q ss_pred HHHHHHH
Q 025497 208 AFEEAIA 214 (252)
Q Consensus 208 afd~ai~ 214 (252)
+++++++
T Consensus 130 t~~ktvs 136 (393)
T KOG0687|consen 130 TYEKTVS 136 (393)
T ss_pred HHHHHhh
Confidence 9999987
No 80
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=22.09 E-value=5.6e+02 Score=22.70 Aligned_cols=28 Identities=25% Similarity=0.441 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 025497 12 EQYVYLAKLAEQAERYEEMVEFMQKLVV 39 (252)
Q Consensus 12 ~~l~~~Aklaeq~ery~Dm~~~mk~~~~ 39 (252)
.-.+..|+++-.+|+|+=+..++.++..
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~ 174 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQ 174 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhc
Confidence 4567899999999999998888888765
No 81
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.03 E-value=1.1e+02 Score=30.62 Aligned_cols=40 Identities=25% Similarity=0.544 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchHhHhhhHHHHH------HHHhCChHHHHHHHHHHHH
Q 025497 156 EDTMQSYKAAQDIAGADLAPTHPIRLGLALNFSVFY------YEILNQSDKACSMAKQAFE 210 (252)
Q Consensus 156 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~------yei~~~~~~A~~iak~afd 210 (252)
+.|.++|.+|++++-.+ +||| |+.+|+.++-++.+.+|+.
T Consensus 132 ~eAIkyY~~AI~l~p~e---------------piFYsNraAcY~~lgd~~~Vied~TkALE 177 (606)
T KOG0547|consen 132 DEAIKYYTQAIELCPDE---------------PIFYSNRAACYESLGDWEKVIEDCTKALE 177 (606)
T ss_pred HHHHHHHHHHHhcCCCC---------------chhhhhHHHHHHHHhhHHHHHHHHHHHhh
No 82
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=21.65 E-value=9e+02 Score=24.94 Aligned_cols=28 Identities=14% Similarity=0.243 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 025497 12 EQYVYLAKLAEQAERYEEMVEFMQKLVV 39 (252)
Q Consensus 12 ~~l~~~Aklaeq~ery~Dm~~~mk~~~~ 39 (252)
.-+..+|.++-..|++++++.++++++.
T Consensus 50 ~~~~~lA~~~~~~g~~~~A~~~~~~al~ 77 (765)
T PRK10049 50 RGYAAVAVAYRNLKQWQNSLTLWQKALS 77 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3467788888888888888888888876
No 83
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=21.09 E-value=86 Score=19.83 Aligned_cols=37 Identities=24% Similarity=0.430 Sum_probs=26.3
Q ss_pred ccccchhhcccchhHHHHHHHHHHHHHHHHHHHhccCCCC
Q 025497 137 DYHRYMAEFKIGDERKAAAEDTMQSYKAAQDIAGADLAPT 176 (252)
Q Consensus 137 DyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt 176 (252)
|.|--++|+.-..++ -++|.+=|++|+++-++.+||.
T Consensus 2 dv~~~Lgeisle~e~---f~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 2 DVYDLLGEISLENEN---FEQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred cHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHhcCCC
Confidence 444556777665554 3568889999999988878763
No 84
>PF08717 nsp8: nsp8 replicase; InterPro: IPR014829 Viral Nsp8 (non structural protein 8) forms a hexadecameric supercomplex with Nsp7 that adopts a hollow cylinder-like structure []. The dimensions of the central channel and positive electrostatic properties of the cylinder imply that it confers processivity on RNA-dependent RNA polymerase []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 2AHM_F 3UB0_D.
Probab=20.58 E-value=1.2e+02 Score=26.35 Aligned_cols=37 Identities=32% Similarity=0.424 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchHhHhhhHHHHHHHHhCChHHHHHHHHHHHHH
Q 025497 155 AEDTMQSYKAAQDIAGADLAPTHPIRLGLALNFSVFYYEILNQSDKACSMAKQAFEE 211 (252)
Q Consensus 155 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd~ 211 (252)
-+.|.++|++|..-. -+ | ..++...+|+.|||..||.
T Consensus 15 Ye~A~~~Ye~av~ng---~~---~--------------q~~Kql~KA~NIAKse~dr 51 (199)
T PF08717_consen 15 YETARQAYEEAVANG---SS---P--------------QELKQLKKAMNIAKSEFDR 51 (199)
T ss_dssp HHHHHHHHHHHHHCT--------H--------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC---CC---H--------------HHHHHHHHHHhHHHHHHhH
Confidence 477999999997621 11 1 1356778999999999984
No 85
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=20.47 E-value=6.1e+02 Score=22.51 Aligned_cols=88 Identities=17% Similarity=0.289 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchHh-HhhhHHHHHHHHhCChHHHHHHHHHHHHHHH--HhhcccCCCchHHHHHHH
Q 025497 155 AEDTMQSYKAAQDIAGADLAPTHPIRLG-LALNFSVFYYEILNQSDKACSMAKQAFEEAI--AELDTLGEESYKDSTLIM 231 (252)
Q Consensus 155 ~~~a~~aY~~A~~~a~~~L~pt~pirLg-L~LN~SVF~yei~~~~~~A~~iak~afd~ai--~~ld~l~ee~~~ds~~il 231 (252)
.+.|.-.|.+|-.+.. .++|....+|+ +.+|+.+-.+..-++.+.|+..-++|++-.- ..++..+.+...==..|+
T Consensus 9 ~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL 87 (278)
T PF08631_consen 9 LDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSIL 87 (278)
T ss_pred HHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHH
Confidence 3557888888887765 78888888888 7789999999863499999999999988632 233333333222245566
Q ss_pred HHHHhhHhhhhc
Q 025497 232 QLLRDNLTLWTS 243 (252)
Q Consensus 232 qlLrDNl~lW~~ 243 (252)
++|-...-.|..
T Consensus 88 ~~La~~~l~~~~ 99 (278)
T PF08631_consen 88 RLLANAYLEWDT 99 (278)
T ss_pred HHHHHHHHcCCC
Confidence 777666666654
No 86
>PHA02103 hypothetical protein
Probab=20.19 E-value=29 Score=27.49 Aligned_cols=15 Identities=40% Similarity=0.479 Sum_probs=11.7
Q ss_pred ccccccchhhcccch
Q 025497 135 KGDYHRYMAEFKIGD 149 (252)
Q Consensus 135 kgDyyRYlaE~~~~~ 149 (252)
.-|||||.+|-..+-
T Consensus 78 ipdyyryf~ee~e~i 92 (135)
T PHA02103 78 IPDYYRYFGEEAEGV 92 (135)
T ss_pred ChHHHHHhcccchhh
Confidence 579999999866553
No 87
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=20.11 E-value=3e+02 Score=20.05 Aligned_cols=36 Identities=28% Similarity=0.443 Sum_probs=26.1
Q ss_pred cCHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHhhh
Q 025497 25 ERYEEMVEFMQKLVVGSTPAAELTVEERNLLSVAYKNVIG 64 (252)
Q Consensus 25 ery~Dm~~~mk~~~~~~~~~~~Lt~eERnLls~ayKn~i~ 64 (252)
++|+.++.+++..-. . ..++.+++-.|-.-||-...
T Consensus 3 ~~F~~A~~~v~~~~~---~-~~~~~~~~L~LYalyKQAt~ 38 (87)
T PF00887_consen 3 EEFEAAVEFVSNLPK---K-SQLSNDDKLELYALYKQATH 38 (87)
T ss_dssp HHHHHHHHHHHHSSS---C-STS-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccc---c-CCCCHHHHHHHHHHHHHHHh
Confidence 357778888777432 1 48999999999988988773
Done!