RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 025498
(252 letters)
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine,
phosphorylation, M7G, spout MT, tRNA processing; HET:
SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Length = 246
Score = 293 bits (751), Expect = e-101
Identities = 127/235 (54%), Positives = 170/235 (72%), Gaps = 3/235 (1%)
Query: 16 LPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQVNCSKKIQFADIGCG 75
LP+KR+YR RAHSNP SD P+SP +D+S YP++ + K ADIGCG
Sbjct: 1 LPKKRYYRQRAHSNPFSDHQLEYPVSPQDMDWSKLYPYYKNAENGQMTKKVT-IADIGCG 59
Query: 76 FGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQ--YQNISVVRTNSMKY 133
FGGL+I LS FPE L++GME+R +VT YV++RI+ALR + + +QNI+V+R N+MK+
Sbjct: 60 FGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKF 119
Query: 134 IPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELG 193
+PN+FEKGQL+KMFF FPDPHFK++ H+ R+I+ LL EYAYVL GG++YTITDV++L
Sbjct: 120 LPNFFEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLH 179
Query: 194 DWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRRI 248
+WM LE HP+FE L+KE E D VK++ +ATEEG+KV R G F A F R+
Sbjct: 180 EWMVKHLEEHPLFERLSKEWEENDECVKIMRNATEEGKKVERKKGDKFVACFTRL 234
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1,
S-adenosyl-L-methionine, tRNA Pro structural genomics,
structural genomics consortium, SGC; HET: SAM; 1.55A
{Homo sapiens}
Length = 235
Score = 269 bits (689), Expect = 1e-91
Identities = 123/228 (53%), Positives = 160/228 (70%), Gaps = 12/228 (5%)
Query: 33 DSHFPVPISPSHVDYSLHYPHFFPPADQVNCSKKIQ------------FADIGCGFGGLL 80
D P+ P +D+S YP FF P Q + FADIGCG+GGLL
Sbjct: 2 DHTLRYPVKPEEMDWSELYPEFFAPLTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGLL 61
Query: 81 ISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEK 140
+ LS LFP+ L++G+E+R KV++YV++RI ALR + G +QNI+ +R+N+MK++PN+F K
Sbjct: 62 VELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYK 121
Query: 141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCL 200
GQLTKMFFLFPDPHFK H+ R+ISP LL EYAYVL VGG++YTITDV EL DWM +
Sbjct: 122 GQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHF 181
Query: 201 ENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRRI 248
E HP+FE + E+L DPVV L ++TEEG+KV RNGG+ F A+FRRI
Sbjct: 182 EEHPLFERVPLEDLSEDPVVGHLGTSTEEGKKVLRNGGKNFPAIFRRI 229
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold
methyltransferase, tRNA modification,
S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A
{Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Length = 218
Score = 101 bits (253), Expect = 2e-26
Identities = 27/137 (19%), Positives = 59/137 (43%), Gaps = 6/137 (4%)
Query: 71 DIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS 130
+IG G G L++++ PE +G+E+ +SN + V+ ++
Sbjct: 40 EIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSN------LRVMCHDA 93
Query: 131 MKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE 190
++ + L + FPDP K ++++RR++ + L +GG+ + TD E
Sbjct: 94 VEVLHKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWE 153
Query: 191 ELGDWMRSCLENHPMFE 207
+ M + + ++
Sbjct: 154 PYAEHMLEVMSSIDGYK 170
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis}
SCOP: c.66.1.53
Length = 213
Score = 98.8 bits (247), Expect = 1e-25
Identities = 31/148 (20%), Positives = 67/148 (45%), Gaps = 7/148 (4%)
Query: 71 DIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS 130
++G G G + ++ P++ IG+EL V +++ N + ++ ++
Sbjct: 44 EVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQN------VKLLNIDA 97
Query: 131 MKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE 190
+ + FE G++ +++ F DP K+++ +RR+ H L +Y V+G GG I+ TD
Sbjct: 98 -DTLTDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNR 156
Query: 191 ELGDWMRSCLENHPMFEALTKEELEADP 218
L ++ + + +L
Sbjct: 157 GLFEYSLKSFSEYGLLLTYVSLDLHNSN 184
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich,
S-adenosylmeth dependent, structural genomics, PSI;
2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Length = 214
Score = 95.8 bits (239), Expect = 2e-24
Identities = 33/147 (22%), Positives = 69/147 (46%), Gaps = 7/147 (4%)
Query: 72 IGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSM 131
+G G G + ++ P++ IG++++ V Y +++L + V N I ++ +
Sbjct: 48 VGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPN------IKLLWVD-G 100
Query: 132 KYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEE 191
+ +YFE G++ +++ F DP K+++ +RR+ LD + +L G I+ TD
Sbjct: 101 SDLTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRG 160
Query: 192 LGDWMRSCLENHPMFEALTKEELEADP 218
L ++ + M +L A
Sbjct: 161 LFEYSLVSFSQYGMKLNGVWLDLHASD 187
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic
resistance, aminoglycoside, S-adenosyl-L-methionine;
HET: SAH; 1.69A {Streptomyces SP}
Length = 218
Score = 76.3 bits (187), Expect = 5e-17
Identities = 23/146 (15%), Positives = 42/146 (28%), Gaps = 9/146 (6%)
Query: 71 DIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS 130
D+G G G ++ P L++ ++ E + + A G N+ +
Sbjct: 33 DVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAK--AAAKPAKGGLPNLLYLWAT- 89
Query: 131 MKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE 190
+ +P G+L P SP +L A V G ++
Sbjct: 90 AERLPPLSGVGEL-----HVLMPWGSLL-RGVLGSSPEMLRGMAAVCRPGASFLVALNLH 143
Query: 191 ELGDWMRSCLENHPMFEALTKEELEA 216
+ E+ E L
Sbjct: 144 AWRPSVPEVGEHPEPTPDSADEWLAP 169
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A*
3mte_A*
Length = 225
Score = 67.9 bits (165), Expect = 8e-14
Identities = 18/137 (13%), Positives = 42/137 (30%), Gaps = 7/137 (5%)
Query: 71 DIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS 130
D+G G G + L+ IG++ + + ++ ++ + G N+ V +
Sbjct: 30 DLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKK--IIKKPSKGGLSNVVFVIAAA 87
Query: 131 MKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE 190
+P + + LFP + +L A + +T
Sbjct: 88 ES-LPFELK-NIADSISILFPWGTLL---EYVIKPNRDILSNVADLAKKEAHFEFVTTYS 142
Query: 191 ELGDWMRSCLENHPMFE 207
+ + P+
Sbjct: 143 DSYEEAEIKKRGLPLLS 159
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 5e-05
Identities = 41/274 (14%), Positives = 74/274 (27%), Gaps = 86/274 (31%)
Query: 1 MLEQETNPTISKSTG-----LPRKRFYRARAHS-NPLSDSHFPVPIS--PSHVDYSLHYP 52
+ E + K LPR + NP S I + D H
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPR------EVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 53 H------------FFPPADQVNCSKKIQ-FADIGCGFGGLLISLSTL--------FPEVL 91
PA+ ++ F I L +V+
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP------SAHIPTILLSLIWFDVIKSDVM 405
Query: 92 MIGMELRDK--VTEYVKERI-------LALRVSNPG----------QYQNISVVRTNSM- 131
++ +L V + KE L L+V Y ++ +
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 132 -----KYIPNYF----EKGQLTKMFFLFP----DPHFKEKNHRRRVISPHLLDEYAYVLG 178
+Y ++ + + + LF D F E+ R D A+
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH--------DSTAWN-A 516
Query: 179 VGGIIYTITDVEELGDWMRSCLENHPMFEALTKE 212
G I+ T+ ++ ++ +N P +E L
Sbjct: 517 SGSILNTLQQLKFYKPYIC---DNDPKYERLVNA 547
Score = 32.5 bits (73), Expect = 0.15
Identities = 28/247 (11%), Positives = 57/247 (23%), Gaps = 94/247 (38%)
Query: 21 FYRARAHSNPLSDSHFPVPISPSHVDYSLHY---PHFFPPA----DQVNCSKKIQFADIG 73
Y+ + SD + + + L + V +K ++
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265
Query: 74 C------------------------------GFG-----GLL-----ISLSTLFPEVL-- 91
C LL L EVL
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 92 ------MIGMELRDKVT--EYVKERILALRVSNPGQYQNISVVRTNSMKYI-PNYFEKGQ 142
+I +RD + + K ++ + +S+ + P + +
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHV----------NCDKLTTIIESSLNVLEPAEYR--K 373
Query: 143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWM-----R 197
+ +FP I LL +I+ ++ +
Sbjct: 374 MFDRLSVFPP-SAH--------IPTILL----------SLIWFDVIKSDVMVVVNKLHKY 414
Query: 198 SCLENHP 204
S +E P
Sbjct: 415 SLVEKQP 421
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 40.3 bits (94), Expect = 3e-04
Identities = 21/159 (13%), Positives = 56/159 (35%), Gaps = 22/159 (13%)
Query: 58 ADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKE---------- 107
A V + + AD+G G G ++++ + + E ++ E+ +
Sbjct: 29 ASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAF 88
Query: 108 ----RILALRVSNPGQYQNISVVRTNSMKYI---PNYFEKGQLTKMFFLFPDPHFKEKNH 160
+L V+ + + + + ++ P Y + G PD E +
Sbjct: 89 SARIEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGD-----RRTPDALKAEAHA 143
Query: 161 RRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSC 199
+ + + ++ GG + I+ + + + + +C
Sbjct: 144 MTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAAC 182
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 36.0 bits (83), Expect = 0.007
Identities = 9/46 (19%), Positives = 20/46 (43%)
Query: 71 DIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSN 116
+ GCG G + L+ P+ + +++ + E +E + N
Sbjct: 43 EAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKN 88
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.024
Identities = 38/240 (15%), Positives = 68/240 (28%), Gaps = 95/240 (39%)
Query: 92 MIGMELRDKVTEYVK---ERILALRVSNPGQYQNISVVRTNSMKYIPNYF--EKGQ---- 142
M GM+L ++ + R G + + +V N + +F EKG+
Sbjct: 1631 M-GMDLYKT-SKAAQDVWNRADNHFKDTYG-FSILDIVINN-PVNLTIHFGGEKGKRIRE 1686
Query: 143 -LTKMFF-LFPD------PHFKEKNHRRRVI---SPH-LLD------------EYAYV-- 176
+ M F D FKE N S LL E A
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFED 1746
Query: 177 -----------------LG-------VGGIIYTITDVEEL----GDWMRSCLENHP---- 204
LG + ++ +I + E+ G M+ +
Sbjct: 1747 LKSKGLIPADATFAGHSLGEYAALASLADVM-SIESLVEVVFYRGMTMQVAVPRDELGRS 1805
Query: 205 -----------MFEALTKEELEADPVVKLLSSATEEGQKVARN----GGQ-----TFQAV 244
+ + ++E L+ VV+ + T ++ N Q +A+
Sbjct: 1806 NYGMIAINPGRVAASFSQEALQY--VVERVGKRTGWLVEIV-NYNVENQQYVAAGDLRAL 1862
Score = 31.9 bits (72), Expect = 0.24
Identities = 47/318 (14%), Positives = 92/318 (28%), Gaps = 126/318 (39%)
Query: 2 LEQETNPTISKSTGLPRKRFYRARAHSN-PLSDSHFP-----VPISPSHV---------- 45
L QE + T+ K+ L + + AR + P V + +
Sbjct: 108 LLQENDTTLVKTKELIKN-YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT 166
Query: 46 -DY-----SLH--YPHFFPPADQVNCSKKIQFADIGCGFGGLLISLST-------LFPEV 90
DY L+ Y I+F+ L L +F +
Sbjct: 167 DDYFEELRDLYQTYHVLVGDL--------IKFS------AETLSELIRTTLDAEKVFTQG 212
Query: 91 LMIGMELRDKVT----EYVKER---------------ILALRVS--NPGQYQNISVVRTN 129
L I L + +Y+ ++ ++ PG+ ++ T
Sbjct: 213 LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 130 SMKYI------------PNYFEKGQ--LTKMFFL-------FPDPHFKEKNHRRRVISPH 168
+ + ++F + +T +FF+ +P + P
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYP----------NTSLPPS 322
Query: 169 LLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMF--EALTKEELEADPVVKLLSSA 226
+L+ D E + + S PM LT+E+++ V +S
Sbjct: 323 ILE----------------DSLENNEGVPS-----PMLSISNLTQEQVQD--YVNKTNSH 359
Query: 227 TEEGQKVA---RNGGQTF 241
G++V NG +
Sbjct: 360 LPAGKQVEISLVNGAKNL 377
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 34.3 bits (78), Expect = 0.031
Identities = 19/143 (13%), Positives = 45/143 (31%), Gaps = 22/143 (15%)
Query: 71 DIGCGFGGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTN 129
+ CG+ L++L P V ++G++ + + ++ I++ R +
Sbjct: 124 SVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAG-----QITLHRQD 178
Query: 130 SMKY-IPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT--- 185
+ K ++ + PD + L + L GG + T
Sbjct: 179 AWKLDTREGYDLLTSNGLNIYEPDDARVTE----------LYRRFWQALKPGGALVTSFL 228
Query: 186 --ITDVEELGDWMRSCLENHPMF 206
+ W ++ H +
Sbjct: 229 TPPPALSPDSPWDMQAIDPHDLQ 251
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 34.2 bits (77), Expect = 0.035
Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 47 YSLHYPHFFPPADQV---NCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTE 103
Y P +V + D+GC G L +S++ + M+G+++ ++
Sbjct: 25 YGYRNPSCEDGRLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIH 84
Query: 104 YVKERI 109
++ I
Sbjct: 85 SARQNI 90
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 33.7 bits (77), Expect = 0.036
Identities = 6/38 (15%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 71 DIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKER 108
++G G L F ++ +E ++ + + R
Sbjct: 48 ELGSFKGDFTSRLQEHFNDI--TCVEASEEAISHAQGR 83
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 33.1 bits (76), Expect = 0.070
Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 14/89 (15%)
Query: 18 RKRFYRARAHSNPLSDSHFPVPISPSHVDYSLH-YPHFFPP----------ADQVNCSKK 66
R Y R P+ D+ S ++ P F + K
Sbjct: 139 RCGLYFGRLEKQPVFDAE-KFWGEYSVDGLTVKTLPGVFSRDGLDVGSQLLLSTLTPHTK 197
Query: 67 IQFADIGCGFGGLLISLSTLFP--EVLMI 93
+ D+GCG G L ++ + P + +
Sbjct: 198 GKVLDVGCGAGVLSVAFARHSPKIRLTLC 226
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 32.6 bits (74), Expect = 0.093
Identities = 29/146 (19%), Positives = 51/146 (34%), Gaps = 29/146 (19%)
Query: 71 DIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS 130
DIGCG G + + PE+ G+++ K I A +Y ++ S
Sbjct: 91 DIGCGEGYYTHAFADALPEITTFGLDV-------SKVAIKAAA----KRYPQVTFCVA-S 138
Query: 131 MKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE 190
+P F + + ++ +P +E A V+ GG + T T
Sbjct: 139 SHRLP--FSDTSMDAIIRIY---------------APCKAEELARVVKPGGWVITATPGP 181
Query: 191 ELGDWMRSCLENHPMFEALTKEELEA 216
++ + N A E+LE
Sbjct: 182 RHLMELKGLIYNEVHLHAPHAEQLEG 207
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 32.4 bits (74), Expect = 0.10
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 71 DIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSN 116
DIGC G L ++ V G+E + E KE++ + + +
Sbjct: 38 DIGCSSGALGAAIKENGTRV--SGIEAFPEAAEQAKEKLDHVVLGD 81
>3dmg_A Probable ribosomal RNA small subunit methyltransf;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Length = 381
Score = 32.6 bits (74), Expect = 0.11
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 41 SPSHVDY-SLHYPHFFPPADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMI 93
S VD SL + Q D+G G+G L + L+ + EV+ +
Sbjct: 208 SAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGV 261
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 32.5 bits (73), Expect = 0.12
Identities = 18/117 (15%), Positives = 37/117 (31%), Gaps = 10/117 (8%)
Query: 23 RARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPP---------ADQVNCSKKIQFADIG 73
R+ P + + + + + F PP + S D G
Sbjct: 670 RSLLSERPCLNYNILLLGVKGPSEERMEAAFFKPPLSKQRVEYALKHIRESSASTLVDFG 729
Query: 74 CGFGGLLISLSTLFPEV-LMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTN 129
CG G LL SL + +IG+++ K + + ++ ++ +
Sbjct: 730 CGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGS 786
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii,
structural genomics, BSGC structure funded by NIH;
1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 31.9 bits (73), Expect = 0.13
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 70 ADIGCGFGGLLISLSTLFPEVLMI 93
D+GCG+G + I+L+ M
Sbjct: 57 LDLGCGYGVIGIALADEVKSTTMA 80
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 31.8 bits (72), Expect = 0.14
Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 63 CSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQN 122
++++ D+GCG G LL L + G+++ + E +ER L Q++
Sbjct: 29 NARRV--IDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQER-LDRLRLPRNQWER 85
Query: 123 ISVV 126
+ ++
Sbjct: 86 LQLI 89
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 31.5 bits (71), Expect = 0.17
Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 9/84 (10%)
Query: 33 DSHFPVPISPSHVDYSLHYPHFFPPADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLM 92
++ + ++ + + + + D+GCG G LL L +
Sbjct: 6 ETEKKLNLNQQRLGTVV---------AVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQI 56
Query: 93 IGMELRDKVTEYVKERILALRVSN 116
G+++ V E K+R+ R+
Sbjct: 57 TGVDVSYSVLERAKDRLKIDRLPE 80
>3lpm_A Putative methyltransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Length = 259
Score = 31.7 bits (72), Expect = 0.19
Identities = 31/153 (20%), Positives = 62/153 (40%), Gaps = 23/153 (15%)
Query: 65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALR-VSNPGQYQNI 123
+K + D+ G G + + LST + ++G+E+++++ + +A R V+ I
Sbjct: 49 RKGKIIDLCSGNGIIPLLLST-RTKAKIVGVEIQERLAD------MAKRSVAYNQLEDQI 101
Query: 124 SVVRTNSMKYIPNYFEKGQLTKM-----FFLFPDPHFKEKNHRRRVISPH--------LL 170
++ + +K I + K + + +F PD K N R I+ H +
Sbjct: 102 EIIEYD-LKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFR-IARHEVMCTLEDTI 159
Query: 171 DEYAYVLGVGGIIYTITDVEELGDWMRSCLENH 203
A +L GG + E L D + +
Sbjct: 160 RVAASLLKQGGKANFVHRPERLLDIIDIMRKYR 192
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus pneumoniae}
PDB: 3ku1_A*
Length = 225
Score = 31.4 bits (71), Expect = 0.23
Identities = 21/131 (16%), Positives = 40/131 (30%), Gaps = 16/131 (12%)
Query: 70 ADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTN 129
D+G L I L I E+ + + + + A + I V N
Sbjct: 20 LDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKE-----KIQVRLAN 74
Query: 130 SMKYIPNYFEKGQLT-------KMFFLFPDPHFKEKNHRRRVISPHL-LDEYAYVLGVGG 181
+ + +T + + + K N R ++ P+ D+ L G
Sbjct: 75 GLAAFEETDQVSVITIAGMGGRLIARILEEGLGKLANVERLILQPNNREDDLRIWLQDHG 134
Query: 182 IIYTITDVEEL 192
+ I E +
Sbjct: 135 --FQIVA-ESI 142
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 31.7 bits (71), Expect = 0.23
Identities = 11/55 (20%), Positives = 23/55 (41%)
Query: 59 DQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALR 113
D++ + F D+G G G +++ ++ G+E D +Y + R
Sbjct: 167 DEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFR 221
>3ll7_A Putative methyltransferase; methytransferase, structural genomics,
MCSG, PSI-2, protein initiative; HET: MSE; 1.80A
{Porphyromonas gingivalis}
Length = 410
Score = 31.7 bits (71), Expect = 0.25
Identities = 13/72 (18%), Positives = 31/72 (43%), Gaps = 12/72 (16%)
Query: 68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNP---GQYQNIS 124
+ D+ G G I+L + + + I E E +A R + P + ++++
Sbjct: 96 KVVDLTGGLGIDFIALMSKASQGIYI---------ERNDETAVAARHNIPLLLNEGKDVN 146
Query: 125 VVRTNSMKYIPN 136
++ + +Y+P
Sbjct: 147 ILTGDFKEYLPL 158
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP),
dimer, inactive(APO, unliganded allostery, DNA binding,
cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB:
3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Length = 227
Score = 30.7 bits (70), Expect = 0.37
Identities = 9/55 (16%), Positives = 13/55 (23%), Gaps = 12/55 (21%)
Query: 193 GDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRR 247
G M L +F+ + + A L R VF
Sbjct: 1 GSHMDEILARAGIFQGVEPSAIAA-----LTKQLQP--VDFPRG-----HTVFAE 43
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 29.9 bits (67), Expect = 0.51
Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 7/114 (6%)
Query: 71 DIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTN 129
D CG G L++L + G +++DK +++ L +++++
Sbjct: 28 DATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDL-----NLIDRVTLIKDG 82
Query: 130 SMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGII 183
Y + MF L P R + L + +L GGII
Sbjct: 83 HQNM-DKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGII 135
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 29.7 bits (67), Expect = 0.54
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 69 FADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSN 116
DIG G G + I P+ + E+ ++ E + + L VS+
Sbjct: 29 LWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSD 76
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN
joint center for structural genomics, JCSG; HET: SAH;
2.11A {Anabaena variabilis atcc 29413}
Length = 245
Score = 30.0 bits (67), Expect = 0.60
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 71 DIGCGFGGLLISLSTLFPEVL 91
D CG G LS FP V+
Sbjct: 62 DFACGNGTQTKFLSQFFPRVI 82
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET:
SAM; 2.00A {Escherichia coli}
Length = 200
Score = 29.8 bits (66), Expect = 0.60
Identities = 10/81 (12%), Positives = 24/81 (29%), Gaps = 9/81 (11%)
Query: 71 DIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS 130
D GCGF L + +++ ++ ++ I L+ + N
Sbjct: 55 DFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTI-------KYRFLNK 107
Query: 131 MKYIPNYFEKGQLTKMFFLFP 151
+ + + + P
Sbjct: 108 ESDVYK--GTYDVVFLLKMLP 126
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 29.5 bits (67), Expect = 0.63
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 69 FADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSN 116
D+GCG GG+ + ++ V ++ D E K+ + + N
Sbjct: 39 VVDVGCGSGGMTVEIAKRCKFV--YAIDYLDGAIEVTKQNLAKFNIKN 84
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 29.6 bits (67), Expect = 0.64
Identities = 19/139 (13%), Positives = 43/139 (30%), Gaps = 37/139 (26%)
Query: 69 FADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT 128
D+GCG GG+ + L+ V ++ + + + + + N++++
Sbjct: 37 AVDVGCGTGGVTLELAGRVRRV--YAIDRNPEAISTTEMNLQRHGLGD-----NVTLMEG 89
Query: 129 NSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVI------SPHLLDEYAYVLGVGGI 182
++ + + PD V+ +L L GG
Sbjct: 90 DAPEALCK-------------IPDID-------IAVVGGSGGELQEILRIIKDKLKPGGR 129
Query: 183 I----YTITDVEELGDWMR 197
I + E + +R
Sbjct: 130 IIVTAILLETKFEAMECLR 148
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural
genomics, protein structure initiative; HET: SAM; 1.98A
{Mycobacterium tuberculosis} SCOP: c.66.1.13
Length = 280
Score = 30.1 bits (67), Expect = 0.65
Identities = 30/188 (15%), Positives = 56/188 (29%), Gaps = 36/188 (19%)
Query: 42 PSHVDYSLHYPHF----FPP-----ADQVNCSKKIQFADIGCGFGGLLISLS-TLFPEVL 91
P VDY + P +P + + + + G G G L +SL + P
Sbjct: 67 PLLVDYVMSMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQ 126
Query: 92 MIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMFFLFP 151
+I E R E+ + + P R + G + +
Sbjct: 127 VISYEQRADHAEHARRNVSGCYGQPPDN------WRLVVSDLADSELPDGSVDRAVLDML 180
Query: 152 DPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIY----TITDVEELGDWMRSCLENHPMFE 207
P + + +L GG++ T+T + + + +R E
Sbjct: 181 APW---------EVLDAVSR----LLVAGGVLMVYVATVTQLSRIVEALR---AKQCWTE 224
Query: 208 ALTKEELE 215
E L+
Sbjct: 225 PRAWETLQ 232
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 29.9 bits (67), Expect = 0.68
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 71 DIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERI 109
DIGCG G L E IG+++ + + ++ + +
Sbjct: 47 DIGCGRGEFLELCKEEGIES--IGVDINEDMIKFCEGKF 83
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 29.8 bits (67), Expect = 0.69
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 71 DIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSN 116
D+G G G +L + + + G+++ T K R L VS
Sbjct: 42 DLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSE 86
>3bux_B E3 ubiquitin-protein ligase CBL; TKB, signal transduction,
proto-oncogene, complex, ATP-binding, glycoprotein,
kinase, membrane, nucleotide-binding; HET: PTR; 1.35A
{Homo sapiens} SCOP: a.39.1.7 a.48.1.1 d.93.1.1 PDB:
1yvh_A* 3bun_B* 3buo_B* 3bum_B* 3buw_B* 3ob1_B* 3ob2_B*
3plf_B* 2cbl_A* 1b47_A 3pfv_A*
Length = 329
Score = 30.1 bits (67), Expect = 0.72
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Query: 133 YIPNYFEKG-QLTKMFFLFPDPHFKEKNHRRR------VISPHLLDEYAYVLGVG---GI 182
++ N +K Q +F + ++E + RR +I H+L E + G G
Sbjct: 96 FMENLMKKTKQTISLFKEGKERMYEENSQPRRNLTKLSLIFSHMLAELKGIFPSGLFQGD 155
Query: 183 IYTITDVEELGDWMRSCLEN 202
+ IT + W ++ E
Sbjct: 156 TFRITKADAAEFWRKAFGEK 175
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 29.7 bits (66), Expect = 0.74
Identities = 24/157 (15%), Positives = 48/157 (30%), Gaps = 17/157 (10%)
Query: 60 QVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQ 119
++ + D+GCG GG L+ G+++ + + R ++
Sbjct: 59 RLYTKRGDSVLDLGCGKGGDLLKYERAGIG-EYYGVDIAEVSINDARVRARNMKRRFKVF 117
Query: 120 YQNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGV 179
++ + + +++ E ++ F E A L
Sbjct: 118 FR----AQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDI-------AQRNIARHLRP 166
Query: 180 GG-IIYTITDVEELGDWMRSCLENHPMFEALTKEELE 215
GG I T+ D + + M K ELE
Sbjct: 167 GGYFIMTVPS----RDVILERYKQGRMSNDFYKIELE 199
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase,
S-adenosyl-L-methionine, RNA metabolism, mRNA
processing, methyltransferase, poxvirus; HET: SAH; 2.70A
{Vaccinia virus}
Length = 302
Score = 29.7 bits (66), Expect = 0.77
Identities = 19/133 (14%), Positives = 38/133 (28%), Gaps = 12/133 (9%)
Query: 71 DIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT-- 128
I G G L +L+ + ER L +Y ++
Sbjct: 54 AIDFGNGADLEKYFYGEIALLV-ATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETI 112
Query: 129 ---NSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGI-IY 184
+ + F G+ + + F + H V++ + + GG +
Sbjct: 113 RSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMN-----NLSELTASGGKVLI 167
Query: 185 TITDVEELGDWMR 197
T D ++L
Sbjct: 168 TTMDGDKLSKLTD 180
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing,
HOST- virus interaction, polymorphism, cytoplasm,
disease mutation; 1.90A {Homo sapiens} PDB: 2k7z_A
1i4e_B 2fun_B 2c2z_B*
Length = 271
Score = 29.4 bits (65), Expect = 0.91
Identities = 21/135 (15%), Positives = 33/135 (24%), Gaps = 20/135 (14%)
Query: 27 HSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQVNCSKKIQFADIGCGFGGLLI-SLST 85
+ + + +S Y F + + G I SL
Sbjct: 156 ETASEEQPYLEMALSSPQTRYIPDEADFL----LGMATVNNCVSYRNPAEGTWYIQSLCQ 211
Query: 86 LFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK 145
E G ++ +TE VSN + N K +P L K
Sbjct: 212 SLRERCPRGDDILTILTEVNY------EVSN-------KDDKKNMGKQMP--QPTFTLRK 256
Query: 146 MFFLFPDPHFKEKNH 160
D +H
Sbjct: 257 KLVFPSDVEHHHHHH 271
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 29.4 bits (66), Expect = 0.95
Identities = 19/133 (14%), Positives = 38/133 (28%), Gaps = 26/133 (19%)
Query: 71 DIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS 130
DIG G GG + ++ + G+++ + ER+ I +
Sbjct: 61 DIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERV--------SGNNKIIFEANDI 111
Query: 131 MKYIPNYFEKGQLTKMFFL--FPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGII----Y 184
+ F + ++ + K L + L G + Y
Sbjct: 112 LT-KE--FPENNFDLIYSRDAILALSLENK--------NKLFQKCYKWLKPTGTLLITDY 160
Query: 185 TITDVEELGDWMR 197
T+ E D +
Sbjct: 161 CATEKENWDDEFK 173
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone
methyltransferase, nucleosome; HET: SAH; 2.20A
{Saccharomyces cerevisiae} SCOP: c.66.1.31
Length = 433
Score = 29.4 bits (65), Expect = 1.2
Identities = 12/55 (21%), Positives = 21/55 (38%)
Query: 59 DQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALR 113
Q K F D+G G G ++ + L G E+ D ++ + L+
Sbjct: 236 QQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELK 290
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 29.3 bits (65), Expect = 1.3
Identities = 23/143 (16%), Positives = 44/143 (30%), Gaps = 25/143 (17%)
Query: 71 DIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERI--LALRVSNPGQYQNISVV- 126
D+GCG G + S L +IG+++ D E ++ + A + N+ +
Sbjct: 89 DLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLK 148
Query: 127 -------RTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGV 179
+ + + L + L E VL
Sbjct: 149 GFIENLATAEPEGVPDSSVDIVISNCVCNLSTNK-------------LALFKEIHRVLRD 195
Query: 180 GGIIYTITDVEELGDWMRSCLEN 202
GG +Y +DV + ++
Sbjct: 196 GGELY-FSDVYADRRLSEAAQQD 217
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 29.0 bits (64), Expect = 1.4
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Query: 133 YIPNYFEKG-QLTKMFFLFPDPHFKEKNHRRR------VISPHLLDEYAYVLGVG---GI 182
++ N +K Q +F + ++E + RR +I H+L E + G G
Sbjct: 72 FMENLMKKTKQTISLFKEGKERMYEENSQPRRNLTKLSLIFSHMLAELKGIFPSGLFQGD 131
Query: 183 IYTITDVEELGDWMRSCLEN 202
+ IT + W ++ E
Sbjct: 132 TFRITKADAAEFWRKAFGEK 151
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural
genomics, joint center for structura genomics, JCSG;
2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4
b.82.3.2
Length = 232
Score = 28.8 bits (65), Expect = 1.4
Identities = 8/41 (19%), Positives = 12/41 (29%), Gaps = 5/41 (12%)
Query: 196 MRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARN 236
M L P+F+ L E+ +L K
Sbjct: 16 MFDTLLQLPLFQGLCHEDFT-----SILDKVKLHFIKHKAG 51
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics,
PSI-2, protein structure initiative; HET: SAH; 2.00A
{Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A
2pkw_A
Length = 258
Score = 28.5 bits (63), Expect = 1.6
Identities = 19/115 (16%), Positives = 37/115 (32%), Gaps = 12/115 (10%)
Query: 58 ADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKV----TEYVKERILALR 113
A + D G G L+++ V M+ E R+ V + R A
Sbjct: 81 AVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRML--E-RNPVVAALLDDGLARGYADA 137
Query: 114 VSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPH 168
+ + ++ +S+ + + + Q ++ DP F K V
Sbjct: 138 EIGGWLQERLQLIHASSLTALTDITPRPQ-----VVYLDPMFPHKQKSALVKKEM 187
>2wyo_A Glutathione synthetase; ligase, ATP-grAsp; HET: GSH; 3.15A
{Trypanosoma brucei}
Length = 562
Score = 28.8 bits (63), Expect = 2.0
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 46 DYSLHYPHFFPPADQVNCSKKIQFADIGCGFGGL 79
DY + + + K ++ I C F GL
Sbjct: 128 DYMREGVYDKMLSTTASRWKNVEINTISCSFAGL 161
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 28.3 bits (63), Expect = 2.3
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 71 DIGCGFGGLLISLSTLFPEVLMIGM 95
D+GCG G L+ + ++ G+
Sbjct: 39 DLGCGPGNSTELLTDRYGVNVITGI 63
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix,
homodimer, transcription regulator; 3.60A {Pseudomonas
aeruginosa}
Length = 227
Score = 28.0 bits (63), Expect = 2.3
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 12/51 (23%)
Query: 197 RSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRR 247
+ L++H +FE L+ +L+ +LL+S+ + + VFR+
Sbjct: 8 QQLLQSHHLFEPLSPVQLQ-----ELLASSDL--VNLDKG-----AYVFRQ 46
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 28.2 bits (63), Expect = 2.6
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 71 DIGCGFGGLLISLSTLFPEVLMIGMEL 97
D+G G G L L +PE +++
Sbjct: 50 DLGAGTGLLSAFLMEKYPEATFTLVDM 76
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces
coelicolor structural genomics, PSI-2, protein structure
initiative; 2.00A {Streptomyces coelicolor A3}
Length = 149
Score = 27.6 bits (62), Expect = 2.7
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 195 WMRSCLENHPMFEALTKEELEA 216
M L +P+F AL E+
Sbjct: 2 HMDDVLRRNPLFAALDDEQSAE 23
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 27.3 bits (61), Expect = 3.2
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 64 SKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERI 109
KK D GCG G L ++ +++ + VKE+
Sbjct: 16 GKKGVIVDYGCGNGFYCKYLLEFATKL--YCIDINVIALKEVKEKF 59
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1;
mixed alpha beta fold, structural genomics, PSI; HET:
SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP:
c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Length = 287
Score = 27.9 bits (63), Expect = 3.3
Identities = 5/11 (45%), Positives = 9/11 (81%)
Query: 71 DIGCGFGGLLI 81
D+GCG+G ++
Sbjct: 70 DVGCGWGATMM 80
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand
complex, cytoplasm, lipid synthesis, methyltransferase;
HET: D22; 2.39A {Mycobacterium tuberculosis} PDB:
1kpi_A*
Length = 302
Score = 28.0 bits (63), Expect = 3.3
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 71 DIGCGFGGLLI 81
DIGCG+G +
Sbjct: 78 DIGCGWGSTMR 88
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research; 2.33A {Bacteroides vulgatus}
Length = 363
Score = 27.7 bits (62), Expect = 3.8
Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 3/61 (4%)
Query: 58 ADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMEL---RDKVTEYVKERILALRV 114
+ V + DIG G EV + ++L + + + + R+
Sbjct: 172 LEIVFSHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERI 231
Query: 115 S 115
Sbjct: 232 H 232
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA
(guanine1835-N2)-methyltransferase; HET: SAM; 2.30A
{Escherichia coli}
Length = 375
Score = 27.6 bits (61), Expect = 4.0
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 70 ADIGCGFGGLLISLSTLFP--EVLMI 93
D+GCG G + ++L P +V+ +
Sbjct: 227 VDLGCGNGVIGLTLLDKNPQAKVVFV 252
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 27.4 bits (61), Expect = 4.2
Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 23/86 (26%)
Query: 71 DIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTN 129
DIG G G L I+L+ + ++ + E + I +++ I +V+ +
Sbjct: 49 DIGSGPGALSIALAKQSDFSI--RALDFSKHMNEIALKNIADANLND-----RIQIVQGD 101
Query: 130 SMKYIPNYFEKGQLTKMFFLFPDPHF 155
IP D +
Sbjct: 102 VHN-IP--------------IEDNYA 112
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 27.4 bits (61), Expect = 4.3
Identities = 26/138 (18%), Positives = 44/138 (31%), Gaps = 29/138 (21%)
Query: 71 DIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS 130
D+GCG G + L+T V + G+ + R A ++N ++ ++
Sbjct: 67 DVGCGIGKPAVRLATARD-VRVTGISISRPQVNQANARATAAGLAN-----RVTFSYADA 120
Query: 131 MKYIPNYFEKGQLTK-----MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGG--II 183
M +P FE PD L E A VL GG I
Sbjct: 121 MD-LP--FEDASFDAVWALESLHHMPDR-------------GRALREMARVLRPGGTVAI 164
Query: 184 YTITDVEELGDWMRSCLE 201
+ + + ++
Sbjct: 165 ADFVLLAPVEGAKKEAVD 182
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics,
midwest CENT structural genomics, protein structure
initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 27.2 bits (60), Expect = 4.6
Identities = 7/48 (14%), Positives = 17/48 (35%)
Query: 69 FADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSN 116
D+G L I L + I E+ + + + + +++
Sbjct: 25 LLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTS 72
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains,
cyclic nucleotide protein transferase, PKG; HET: CMP;
2.50A {Bos taurus}
Length = 299
Score = 27.2 bits (60), Expect = 4.6
Identities = 6/57 (10%), Positives = 16/57 (28%), Gaps = 7/57 (12%)
Query: 160 HRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEA 216
H + S T E D ++ + ++ + L +++
Sbjct: 8 HHHGMASIEGRGSMQ-------AFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQE 57
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent
methyltransferase fold, trans; HET: SAM; 2.00A
{Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB:
2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Length = 318
Score = 27.2 bits (61), Expect = 5.0
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 71 DIGCGFGGLLI 81
DIGCG+G +
Sbjct: 96 DIGCGWGTTMR 106
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 27.2 bits (60), Expect = 5.1
Identities = 8/48 (16%), Positives = 17/48 (35%)
Query: 69 FADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSN 116
ADIG L I E+ D + ++++ + ++
Sbjct: 25 IADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTE 72
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro
transferase; HET: 2HI SAH; 2.35A {Medicago truncatula}
PDB: 1zga_A* 1zhf_A* 1zgj_A*
Length = 358
Score = 27.1 bits (60), Expect = 5.1
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 69 FADIGCGFGGLLISLSTLFPEVLMIGMEL 97
D+G G GG+ + +FP + +
Sbjct: 197 LVDVGGGTGGVTKLIHEIFPHLKCTVFDQ 225
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic
resistance, methyltransferase, transferase; HET: SAM;
2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Length = 281
Score = 27.1 bits (59), Expect = 5.2
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 71 DIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVS 115
D+ CG L L E + I ++ ++ +V E + L V
Sbjct: 138 DLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP 182
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 27.1 bits (60), Expect = 5.2
Identities = 24/133 (18%), Positives = 42/133 (31%), Gaps = 36/133 (27%)
Query: 71 DIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTN 129
D+G G+GG L F + + + + +E +++ NI+V +
Sbjct: 88 DLGAGYGGAARFLVRKFGVSI--DCLNIAPVQNKRNEEYNNQAGLAD-----NITVKYGS 140
Query: 130 SMKYIPNYFEKGQLTK-----MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIY 184
++ IP E F PD + E A VL G++
Sbjct: 141 FLE-IP--CEDNSYDFIWSQDAFLHSPDK-------------LKVFQECARVLKPRGVMA 184
Query: 185 TITDVEELGDWMR 197
D M+
Sbjct: 185 IT-------DPMK 190
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity,
apoptosis, hydrolase, protease protease; 2.05A {Homo
sapiens}
Length = 302
Score = 27.4 bits (60), Expect = 5.2
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 122 NISVVRTNSMKYIPNYFEKGQLTKMFFLFP 151
S + + +P E+ LT+ F+LFP
Sbjct: 272 RFSFEQPDGRAQMP-TTERVTLTRCFYLFP 300
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 27.2 bits (60), Expect = 5.5
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 71 DIGCGFGGLLISLSTLFP-EVLMIGM--ELRDKVTEYVKERILALRVS 115
DIGCG GG + L+ +V + D ++ L RV+
Sbjct: 52 DIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVT 99
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase;
1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B*
1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B*
1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B*
3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Length = 88
Score = 25.8 bits (57), Expect = 5.7
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 122 NISVVRTNSMKYIPNYFEKGQLTKMFFLFP 151
S + + +P E+ LT+ F+LFP
Sbjct: 58 RFSFEQPDGRAQMPT-TERVTLTRCFYLFP 86
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP
regulatory protein, structural genomi 2, protein
structure initiative; 2.20A {Ruegeria pomeroyi} PDB:
3h3z_A*
Length = 237
Score = 26.9 bits (60), Expect = 5.8
Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 12/51 (23%)
Query: 197 RSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRR 247
++ N + +L ++ ++A LLS A + R + +F +
Sbjct: 10 KAIARNSLLIRSLPEQHVDA-----LLSQAVW--RSYDRG-----ETLFLQ 48
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll,
BCHU, SAM, SAH, adenosylmethyonine,
S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium
tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Length = 359
Score = 27.0 bits (60), Expect = 6.8
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 69 FADIGCGFGGLLISLSTLFPEVLMIGMEL---RDKVTEYVKERILALRVS 115
D+G G G + ++ FPE+ + L D V E E+ +A R+
Sbjct: 194 MIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMR 243
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA
transcription regulator, DNA binding protein; HET: HEM;
2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Length = 220
Score = 26.4 bits (59), Expect = 7.3
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 197 RSCLENHPMFEALTKEELEA 216
+ L + + E L EE
Sbjct: 3 QMRLTDTNLLEVLNSEEYSG 22
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase,
oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo
sapiens} PDB: 2jg7_A*
Length = 500
Score = 26.7 bits (60), Expect = 7.8
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 212 EELEADPVVKLLS---SATEEGQKVARNGGQTF 241
+ D V LLS S T+ G++V + F
Sbjct: 232 TAMAKDERVNLLSFTGS-TQVGKQVGLMVQERF 263
>2z69_A DNR protein; beta barrel, dimerization helix, transcription
regulator; 2.10A {Pseudomonas aeruginosa}
Length = 154
Score = 26.1 bits (58), Expect = 7.9
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 197 RSCLENHPMFEALTKEELEA 216
+ L++H +FE L+ +L+
Sbjct: 11 QQLLQSHHLFEPLSPVQLQE 30
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent
methyltransfer structural genomics, PSI-2; HET: MSE;
1.90A {Burkholderia thailandensis}
Length = 352
Score = 26.6 bits (59), Expect = 8.1
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 69 FADIGCGFGGLLISLSTLFPEVLMIGMEL---RDKVTEYVKERILALRVS 115
D+ G G L + P++ +L RD + + L RV
Sbjct: 183 VIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVE 232
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 26.4 bits (58), Expect = 8.9
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 71 DIGCGFGGLLISLSTLFP-EVLMIGM--ELRDKVTEYVKERILALRVS 115
DIGCG GG + L+ ++ I + + + E + A RV
Sbjct: 52 DIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVK 99
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 26.3 bits (58), Expect = 9.0
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 71 DIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSN 116
DIG G G ++ S E IG++ ++ E V N
Sbjct: 27 DIGAGAGHTALAFSPYVQEC--IGVDATKEMVEVASSFAQEKGVEN 70
>2r3s_A Uncharacterized protein; methyltransferase domain, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE; 2.15A {Nostoc
punctiforme}
Length = 335
Score = 26.6 bits (59), Expect = 9.3
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 71 DIGCGFGGLLISLSTLFPEVLMIGMEL---RDKVTEYVKERILALRVS 115
DI G I+++ P + G++ + E + + +A R
Sbjct: 171 DISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYH 218
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.411
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,042,382
Number of extensions: 244340
Number of successful extensions: 803
Number of sequences better than 10.0: 1
Number of HSP's gapped: 795
Number of HSP's successfully gapped: 91
Length of query: 252
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 161
Effective length of database: 4,160,982
Effective search space: 669918102
Effective search space used: 669918102
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.8 bits)