Query 025499
Match_columns 252
No_of_seqs 212 out of 2317
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 11:33:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025499.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025499hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 4.6E-37 1.6E-41 234.8 17.4 163 4-203 13-180 (213)
2 3tyt_A Heterogeneous nuclear r 100.0 7.3E-36 2.5E-40 225.9 20.4 196 4-201 2-204 (205)
3 1b7f_A Protein (SXL-lethal pro 100.0 1.4E-35 4.9E-40 218.4 19.6 160 5-201 2-168 (168)
4 3md3_A Nuclear and cytoplasmic 100.0 1.9E-35 6.6E-40 217.2 19.6 159 7-202 1-165 (166)
5 1fxl_A Paraneoplastic encephal 100.0 3.9E-35 1.3E-39 215.8 20.1 157 5-200 1-166 (167)
6 1l3k_A Heterogeneous nuclear r 100.0 4.7E-35 1.6E-39 221.0 19.4 166 4-204 11-183 (196)
7 3pgw_A U1-A; protein-RNA compl 100.0 4.5E-34 1.6E-38 227.5 25.2 197 3-203 6-282 (282)
8 3nmr_A Cugbp ELAV-like family 100.0 7.3E-35 2.5E-39 216.0 19.1 163 5-202 2-175 (175)
9 2adc_A Polypyrimidine tract-bi 100.0 2.7E-34 9.2E-39 221.8 22.6 195 3-203 31-227 (229)
10 2qfj_A FBP-interacting repress 100.0 1.5E-34 5.2E-39 221.4 19.2 173 5-205 27-206 (216)
11 1qm9_A Polypyrimidine tract-bi 100.0 2.9E-34 1E-38 217.0 20.3 191 6-202 3-195 (198)
12 2yh0_A Splicing factor U2AF 65 100.0 2E-33 6.8E-38 212.4 23.0 178 4-204 2-194 (198)
13 2g4b_A Splicing factor U2AF 65 100.0 7.2E-34 2.4E-38 210.1 19.8 155 4-201 2-171 (172)
14 2cjk_A Nuclear polyadenylated 100.0 1.9E-34 6.5E-39 212.2 13.5 158 4-203 1-165 (167)
15 1fje_B Nucleolin RBD12, protei 100.0 1.5E-34 5E-39 214.5 12.7 162 3-203 10-173 (175)
16 3sde_A Paraspeckle component 1 100.0 1E-32 3.5E-37 216.9 18.5 156 4-203 20-178 (261)
17 3smz_A Protein raver-1, ribonu 100.0 2.1E-32 7.3E-37 218.0 19.2 166 4-205 93-265 (284)
18 3smz_A Protein raver-1, ribonu 100.0 6.6E-32 2.2E-36 215.2 19.8 151 4-203 20-174 (284)
19 2ghp_A U4/U6 snRNA-associated 100.0 3.4E-32 1.2E-36 217.6 17.9 167 5-204 116-291 (292)
20 2ghp_A U4/U6 snRNA-associated 100.0 1.5E-31 5E-36 214.0 19.5 153 4-203 39-196 (292)
21 4f25_A Polyadenylate-binding p 99.9 5E-26 1.7E-30 156.4 10.2 109 5-140 4-113 (115)
22 2kn4_A Immunoglobulin G-bindin 99.9 6E-23 2E-27 149.2 14.4 143 36-204 3-150 (158)
23 4fxv_A ELAV-like protein 1; RN 99.9 1.7E-23 5.8E-28 139.5 10.1 78 5-82 18-98 (99)
24 3lqv_A PRE-mRNA branch site pr 99.9 2E-23 6.7E-28 143.6 9.0 106 2-150 4-109 (115)
25 2i2y_A Fusion protein consists 99.9 2.2E-22 7.6E-27 144.9 13.8 138 42-204 10-148 (150)
26 1sjq_A Polypyrimidine tract-bi 99.9 1.5E-22 5E-27 134.7 10.4 81 2-85 12-94 (105)
27 2lxi_A RNA-binding protein 10; 99.9 6.1E-23 2.1E-27 134.8 8.2 79 6-84 1-84 (91)
28 1x4a_A Splicing factor, argini 99.9 6.3E-22 2.2E-26 134.7 12.2 82 2-83 18-99 (109)
29 3pgw_S U1-70K; protein-RNA com 99.9 3.3E-21 1.1E-25 160.9 19.0 81 4-84 100-183 (437)
30 3r27_A HnRNP L, heterogeneous 99.9 4.2E-22 1.4E-26 131.2 10.2 78 3-83 18-97 (100)
31 2hvz_A Splicing factor, argini 99.9 2.7E-22 9.3E-27 134.6 9.4 76 7-84 1-76 (101)
32 2fy1_A RNA-binding motif prote 99.9 1.3E-21 4.6E-26 134.3 13.0 84 1-84 2-87 (116)
33 3beg_B Splicing factor, argini 99.9 9.6E-23 3.3E-27 139.9 6.6 75 121-202 13-92 (115)
34 3s8s_A Histone-lysine N-methyl 99.9 5.1E-22 1.8E-26 134.8 10.0 80 4-83 4-86 (110)
35 1whw_A Hypothetical protein ri 99.9 2E-21 6.7E-26 129.9 12.5 83 3-85 5-90 (99)
36 2a3j_A U1 small nuclear ribonu 99.9 1.1E-21 3.9E-26 136.1 11.1 81 3-83 26-110 (127)
37 2ad9_A Polypyrimidine tract-bi 99.9 9.6E-22 3.3E-26 134.1 10.4 81 2-85 27-109 (119)
38 2cqi_A Nucleolysin TIAR; RNA r 99.9 3.4E-21 1.2E-25 129.7 13.0 82 3-84 12-94 (103)
39 2dnz_A Probable RNA-binding pr 99.9 3.2E-21 1.1E-25 127.9 12.6 81 3-83 2-85 (95)
40 2dgu_A Heterogeneous nuclear r 99.9 4.1E-21 1.4E-25 129.2 13.1 79 4-87 9-87 (103)
41 1x4d_A Matrin 3; structural ge 99.9 5.2E-22 1.8E-26 132.1 8.3 78 3-83 12-92 (102)
42 2cpf_A RNA binding motif prote 99.9 1.4E-21 4.9E-26 130.4 10.5 81 3-83 2-88 (98)
43 2wbr_A GW182, gawky, LD47780P; 99.9 1.1E-21 3.9E-26 124.4 9.3 75 4-81 5-79 (89)
44 2dgo_A Cytotoxic granule-assoc 99.9 5.6E-21 1.9E-25 131.3 13.6 82 4-85 13-97 (115)
45 2x1f_A MRNA 3'-END-processing 99.9 1.9E-21 6.6E-26 129.2 10.5 79 5-83 1-82 (96)
46 1x4c_A Splicing factor, argini 99.9 6.3E-21 2.1E-25 129.4 13.2 82 119-203 10-92 (108)
47 3bs9_A Nucleolysin TIA-1 isofo 99.9 1.4E-21 4.7E-26 127.5 9.5 80 4-83 4-86 (87)
48 2cq1_A PTB-like protein L; RRM 99.9 3.5E-21 1.2E-25 128.2 11.6 79 3-84 12-92 (101)
49 1x5t_A Splicing factor 3B subu 99.9 2.4E-21 8.1E-26 128.8 10.8 82 3-84 2-87 (96)
50 2d9p_A Polyadenylate-binding p 99.9 2.6E-21 8.8E-26 130.3 11.0 83 3-85 12-95 (103)
51 1nu4_A U1A RNA binding domain; 99.9 6.4E-22 2.2E-26 131.8 7.8 83 1-83 3-89 (97)
52 2dgs_A DAZ-associated protein 99.9 5.1E-21 1.7E-25 127.9 12.2 81 3-84 7-90 (99)
53 2cq3_A RNA-binding protein 9; 99.9 7.3E-21 2.5E-25 128.1 12.8 82 3-84 12-94 (103)
54 3mdf_A Peptidyl-prolyl CIS-tra 99.9 2E-21 7E-26 126.1 9.7 79 3-81 4-85 (85)
55 3md1_A Nuclear and cytoplasmic 99.9 2.9E-21 1E-25 124.8 10.4 78 6-83 1-81 (83)
56 2cq0_A Eukaryotic translation 99.9 2.5E-21 8.4E-26 130.4 10.2 81 4-84 13-96 (103)
57 1x5u_A Splicing factor 3B subu 99.9 5.6E-21 1.9E-25 129.1 12.0 81 4-84 13-96 (105)
58 2cqb_A Peptidyl-prolyl CIS-tra 99.9 2.3E-21 7.8E-26 130.3 9.9 81 4-84 10-93 (102)
59 2lkz_A RNA-binding protein 5; 99.9 5.2E-22 1.8E-26 130.8 6.6 79 4-82 7-94 (95)
60 2do0_A HnRNP M, heterogeneous 99.9 9.4E-21 3.2E-25 129.9 13.1 82 3-84 12-95 (114)
61 1wex_A Hypothetical protein (r 99.9 4.8E-21 1.7E-25 128.3 11.3 79 3-84 12-92 (104)
62 3pgw_S U1-70K; protein-RNA com 99.9 1.2E-21 4.2E-26 163.5 10.3 76 123-202 101-180 (437)
63 2dnm_A SRP46 splicing factor; 99.9 2.8E-21 9.7E-26 130.1 10.2 80 4-83 11-93 (103)
64 2cqd_A RNA-binding region cont 99.9 1.6E-20 5.4E-25 129.2 14.1 80 3-83 14-96 (116)
65 2dgx_A KIAA0430 protein; RRM d 99.9 5.4E-21 1.8E-25 126.9 11.3 80 4-83 7-90 (96)
66 2dgv_A HnRNP M, heterogeneous 99.9 3.8E-21 1.3E-25 126.8 10.5 81 3-83 5-86 (92)
67 2cpz_A CUG triplet repeat RNA- 99.9 3.3E-21 1.1E-25 132.4 10.6 81 4-84 23-106 (115)
68 1x5s_A Cold-inducible RNA-bind 99.9 4.7E-21 1.6E-25 128.8 10.9 81 4-84 10-93 (102)
69 2do4_A Squamous cell carcinoma 99.9 4.6E-21 1.6E-25 128.3 10.7 80 4-83 15-96 (100)
70 2cph_A RNA binding motif prote 99.9 9.2E-21 3.1E-25 128.5 11.9 82 3-84 12-98 (107)
71 1p27_B RNA-binding protein 8A; 99.9 4E-21 1.4E-25 130.1 10.1 80 4-83 21-103 (106)
72 2dnh_A Bruno-like 5, RNA bindi 99.9 6.7E-21 2.3E-25 128.7 11.1 82 4-85 13-99 (105)
73 2e5h_A Zinc finger CCHC-type a 99.9 5.2E-21 1.8E-25 126.6 10.2 78 4-81 14-94 (94)
74 4a8x_A RNA-binding protein wit 99.9 5.5E-21 1.9E-25 124.9 10.2 80 4-83 2-85 (88)
75 2dnq_A RNA-binding protein 4B; 99.9 1.3E-20 4.3E-25 123.7 11.8 77 3-84 5-81 (90)
76 2cqc_A Arginine/serine-rich sp 99.8 4.9E-21 1.7E-25 127.0 9.7 79 4-82 13-94 (95)
77 2div_A TRNA selenocysteine ass 99.8 4.2E-21 1.4E-25 128.3 9.3 82 2-83 5-94 (99)
78 1wi8_A EIF-4B, eukaryotic tran 99.8 9.7E-21 3.3E-25 127.7 11.2 80 3-84 12-95 (104)
79 2dgt_A RNA-binding protein 30; 99.8 1.5E-20 5.3E-25 123.8 11.9 76 3-83 7-82 (92)
80 1x4h_A RNA-binding protein 28; 99.8 1.1E-20 3.9E-25 128.9 11.4 81 4-84 13-102 (111)
81 2dgp_A Bruno-like 4, RNA bindi 99.8 1.2E-20 4.2E-25 127.6 11.4 82 3-84 10-97 (106)
82 1why_A Hypothetical protein ri 99.8 1.1E-20 3.8E-25 125.7 10.9 77 4-83 15-93 (97)
83 2dis_A Unnamed protein product 99.8 2.4E-20 8.3E-25 126.8 12.7 83 3-85 5-94 (109)
84 1s79_A Lupus LA protein; RRM, 99.8 6.1E-21 2.1E-25 127.8 9.4 78 4-82 9-88 (103)
85 2ywk_A Putative RNA-binding pr 99.8 6.5E-21 2.2E-25 126.4 9.5 80 3-82 13-94 (95)
86 1x4c_A Splicing factor, argini 99.8 2.6E-20 9E-25 126.3 12.6 77 4-84 13-94 (108)
87 1x4f_A Matrin 3; structural ge 99.8 5.4E-21 1.8E-25 128.9 9.0 79 2-83 21-102 (112)
88 2kxn_B Transformer-2 protein h 99.8 5.8E-21 2E-25 133.4 9.5 81 3-83 43-126 (129)
89 1oo0_B CG8781-PA, drosophila Y 99.8 7.8E-21 2.7E-25 129.5 9.9 80 4-83 24-106 (110)
90 2cq2_A Hypothetical protein LO 99.8 1.1E-20 3.6E-25 127.5 10.2 80 2-84 21-107 (114)
91 2dnp_A RNA-binding protein 14; 99.8 2.2E-20 7.7E-25 122.5 11.2 76 3-83 6-81 (90)
92 2jrs_A RNA-binding protein 39; 99.8 1E-20 3.5E-25 128.2 9.8 81 3-83 23-106 (108)
93 3p5t_L Cleavage and polyadenyl 99.8 1.6E-21 5.4E-26 127.9 5.6 77 7-83 2-83 (90)
94 2dng_A Eukaryotic translation 99.8 1.9E-20 6.6E-25 126.0 11.0 80 3-84 12-94 (103)
95 3ns6_A Eukaryotic translation 99.8 2.1E-21 7.2E-26 129.8 6.2 80 4-83 4-93 (100)
96 2jvr_A Nucleolar protein 3; RN 99.8 1.1E-20 3.6E-25 127.9 9.6 79 4-83 26-105 (111)
97 1x4g_A Nucleolysin TIAR; struc 99.8 3.1E-20 1.1E-24 126.2 11.9 78 4-84 23-100 (109)
98 2cpe_A RNA-binding protein EWS 99.8 1.5E-20 5.2E-25 128.7 10.3 81 4-84 13-104 (113)
99 2dhg_A TRNA selenocysteine ass 99.8 2E-20 6.8E-25 126.2 10.5 82 3-84 6-91 (104)
100 2cpi_A CCR4-NOT transcription 99.8 7.4E-21 2.5E-25 129.7 8.2 80 4-83 13-101 (111)
101 3ulh_A THO complex subunit 4; 99.8 1.6E-20 5.6E-25 127.2 9.8 78 4-81 27-106 (107)
102 2khc_A Testis-specific RNP-typ 99.8 1.1E-20 3.7E-25 130.5 9.0 79 3-81 37-118 (118)
103 2cpx_A Hypothetical protein FL 99.8 2.4E-20 8.1E-25 128.1 10.6 80 4-84 23-106 (115)
104 2err_A Ataxin-2-binding protei 99.8 1.2E-20 4E-25 128.2 9.0 80 4-83 27-107 (109)
105 3ex7_B RNA-binding protein 8A; 99.8 1.7E-20 5.8E-25 131.0 9.9 81 4-84 20-103 (126)
106 1h2v_Z 20 kDa nuclear CAP bind 99.8 2.9E-20 1E-24 134.6 11.4 81 4-84 37-120 (156)
107 2la6_A RNA-binding protein FUS 99.8 1.5E-20 5.1E-25 125.6 9.1 78 4-81 11-99 (99)
108 3s7r_A Heterogeneous nuclear r 99.8 2.4E-20 8.2E-25 121.5 9.7 77 3-80 8-87 (87)
109 3ucg_A Polyadenylate-binding p 99.8 2.9E-20 1E-24 121.7 10.2 78 5-83 5-85 (89)
110 2ytc_A PRE-mRNA-splicing facto 99.8 2.5E-20 8.4E-25 121.0 9.6 76 3-81 9-85 (85)
111 2cpj_A Non-POU domain-containi 99.8 2.8E-20 9.5E-25 124.3 10.0 77 4-83 13-89 (99)
112 1u6f_A Tcubp1, RNA-binding pro 99.8 5.8E-20 2E-24 130.5 12.2 81 4-84 40-123 (139)
113 2xnq_A Nuclear polyadenylated 99.8 4.3E-20 1.5E-24 122.6 10.7 76 3-83 19-95 (97)
114 2jvo_A Nucleolar protein 3; nu 99.8 2.8E-20 9.5E-25 126.0 9.9 76 4-84 29-104 (108)
115 2krb_A Eukaryotic translation 99.8 9.7E-21 3.3E-25 121.6 7.3 72 6-77 1-80 (81)
116 2kvi_A Nuclear polyadenylated 99.8 1.8E-20 6.1E-25 124.4 8.8 75 4-83 8-83 (96)
117 2dh8_A DAZ-associated protein 99.8 1.6E-20 5.4E-25 126.9 8.6 81 3-84 13-96 (105)
118 2cqh_A IGF-II mRNA-binding pro 99.8 2.6E-20 9.1E-25 122.9 9.4 78 3-84 5-84 (93)
119 2nlw_A Eukaryotic translation 99.8 1.7E-20 5.9E-25 126.5 8.7 80 4-83 13-100 (105)
120 2rs2_A Musashi-1, RNA-binding 99.8 4.8E-20 1.6E-24 125.1 10.8 80 4-84 23-105 (109)
121 2fc9_A NCL protein; structure 99.8 3.4E-20 1.2E-24 124.3 9.8 79 4-83 13-91 (101)
122 2m2b_A RNA-binding protein 10; 99.8 2.5E-20 8.5E-25 130.9 9.4 81 2-83 19-108 (131)
123 3n9u_C Cleavage and polyadenyl 99.8 3.3E-20 1.1E-24 133.7 9.8 79 5-83 54-137 (156)
124 2cpd_A Apobec-1 stimulating pr 99.8 1.1E-19 3.8E-24 121.3 11.7 75 4-83 13-89 (99)
125 2kt5_A RNA and export factor-b 99.8 9.8E-20 3.4E-24 126.7 11.8 80 4-83 33-114 (124)
126 2la4_A Nuclear and cytoplasmic 99.8 2.7E-20 9.1E-25 124.8 8.6 76 4-82 25-100 (101)
127 1whx_A Hypothetical protein ri 99.8 3.6E-20 1.2E-24 126.1 9.3 77 4-83 8-84 (111)
128 1fjc_A Nucleolin RBD2, protein 99.8 2.2E-20 7.6E-25 124.0 8.0 78 4-83 14-91 (96)
129 2e5j_A Methenyltetrahydrofolat 99.8 4.6E-20 1.6E-24 122.7 9.3 78 4-83 17-94 (97)
130 2mss_A Protein (musashi1); RNA 99.8 2.2E-20 7.4E-25 118.2 7.3 72 8-80 1-75 (75)
131 1p1t_A Cleavage stimulation fa 99.8 1.6E-20 5.5E-25 126.6 7.1 80 4-83 6-88 (104)
132 2cqp_A RNA-binding protein 12; 99.8 2.1E-20 7.3E-25 124.6 7.6 80 4-83 13-95 (98)
133 3egn_A RNA-binding protein 40; 99.8 2.4E-20 8.2E-25 133.1 8.3 82 3-84 42-131 (143)
134 1x4e_A RNA binding motif, sing 99.8 6.2E-21 2.1E-25 123.8 4.8 79 3-81 2-83 (85)
135 2ek1_A RNA-binding protein 12; 99.8 1.5E-20 5.1E-25 124.6 6.5 79 4-82 13-94 (95)
136 2cqg_A TDP-43, TAR DNA-binding 99.8 1.9E-19 6.5E-24 121.1 11.8 80 3-84 12-94 (103)
137 2kn4_A Immunoglobulin G-bindin 99.8 1.6E-19 5.3E-24 131.1 12.0 80 4-83 68-150 (158)
138 1x4b_A Heterogeneous nuclear r 99.8 8.8E-20 3E-24 125.4 9.9 79 5-84 26-107 (116)
139 2lea_A Serine/arginine-rich sp 99.8 3.9E-20 1.3E-24 130.3 8.1 80 4-83 45-127 (135)
140 1rk8_A CG8781-PA, CG8781-PA pr 99.8 6.5E-20 2.2E-24 133.9 9.4 82 4-85 70-154 (165)
141 1wf1_A RNA-binding protein RAL 99.8 1E-19 3.6E-24 123.8 9.7 74 5-83 26-100 (110)
142 2dgw_A Probable RNA-binding pr 99.8 1.6E-19 5.4E-24 118.6 10.2 78 4-83 8-87 (91)
143 2j76_E EIF-4B, EIF4B, eukaryot 99.8 3.2E-20 1.1E-24 124.1 6.9 78 4-83 17-98 (100)
144 2fc8_A NCL protein; structure 99.8 8.2E-20 2.8E-24 122.7 8.9 81 3-83 12-92 (102)
145 2jwn_A Embryonic polyadenylate 99.8 9.4E-20 3.2E-24 126.8 9.5 78 5-83 35-115 (124)
146 1wg5_A Heterogeneous nuclear r 99.8 2.2E-19 7.5E-24 120.9 10.7 79 4-83 13-94 (104)
147 2ki2_A SS-DNA binding protein 99.8 2.3E-20 8E-25 122.4 5.6 76 7-83 2-80 (90)
148 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.6E-19 5.4E-24 128.5 10.4 77 4-80 61-140 (140)
149 1fj7_A Nucleolin RBD1, protein 99.8 2.5E-20 8.4E-25 125.0 5.8 79 4-83 15-95 (101)
150 1uaw_A Mouse-musashi-1; RNP-ty 99.8 3.2E-20 1.1E-24 118.1 5.9 73 7-80 1-76 (77)
151 2cq4_A RNA binding motif prote 99.8 9.1E-20 3.1E-24 125.0 8.3 78 5-83 24-104 (114)
152 2i2y_A Fusion protein consists 99.8 1.6E-19 5.5E-24 129.8 9.9 78 4-83 71-148 (150)
153 2diu_A KIAA0430 protein; struc 99.8 5.4E-19 1.8E-23 113.1 10.8 74 4-84 6-85 (96)
154 1x5o_A RNA binding motif, sing 99.8 1.8E-19 6.2E-24 123.5 9.2 80 4-83 23-112 (114)
155 2e5g_A U6 snRNA-specific termi 99.8 5.4E-19 1.8E-23 116.8 11.1 77 4-83 6-82 (94)
156 2cpy_A RNA-binding protein 12; 99.8 1.1E-19 3.9E-24 124.3 8.0 79 4-83 13-94 (114)
157 1x5p_A Negative elongation fac 99.8 6.2E-19 2.1E-23 117.2 11.3 76 4-84 13-88 (97)
158 2db1_A Heterogeneous nuclear r 99.8 1.1E-19 3.6E-24 125.2 7.6 79 4-83 15-98 (118)
159 1sjr_A Polypyrimidine tract-bi 99.8 1E-18 3.4E-23 125.0 12.6 77 7-84 47-125 (164)
160 3beg_B Splicing factor, argini 99.8 2.9E-19 1E-23 122.4 9.5 76 4-83 14-94 (115)
161 1wg1_A KIAA1579 protein, homol 99.8 1.3E-19 4.3E-24 118.3 7.1 77 3-83 2-78 (88)
162 1iqt_A AUF1, heterogeneous nuc 99.8 8.8E-20 3E-24 115.4 6.1 72 8-80 1-75 (75)
163 2e44_A Insulin-like growth fac 99.8 4.6E-19 1.6E-23 117.6 9.9 79 4-83 13-92 (96)
164 2jvr_A Nucleolar protein 3; RN 99.8 3.6E-19 1.2E-23 120.4 9.4 82 121-206 25-107 (111)
165 2f3j_A RNA and export factor b 99.8 4E-19 1.4E-23 130.8 10.3 80 4-83 86-167 (177)
166 2fy1_A RNA-binding motif prote 99.8 2.9E-18 9.9E-23 117.6 13.9 81 123-207 6-89 (116)
167 2hgl_A HNRPF protein, heteroge 99.8 1.4E-19 4.8E-24 126.9 7.3 79 4-83 42-125 (136)
168 4fxv_A ELAV-like protein 1; RN 99.8 6.6E-19 2.3E-23 117.2 10.3 76 123-202 18-97 (99)
169 1wez_A HnRNP H', FTP-3, hetero 99.8 1.9E-19 6.4E-24 120.5 7.3 78 4-83 13-92 (102)
170 1wel_A RNA-binding protein 12; 99.8 9.3E-20 3.2E-24 126.8 5.8 79 4-83 23-104 (124)
171 3zzy_A Polypyrimidine tract-bi 99.8 1.8E-18 6.1E-23 119.3 11.8 75 8-84 30-107 (130)
172 1rk8_A CG8781-PA, CG8781-PA pr 99.8 7.2E-19 2.5E-23 128.4 10.4 136 50-204 11-152 (165)
173 2dnn_A RNA-binding protein 12; 99.8 7E-19 2.4E-23 118.7 9.2 76 5-82 15-92 (109)
174 3ex7_B RNA-binding protein 8A; 99.8 9.4E-19 3.2E-23 122.1 9.9 81 119-203 17-101 (126)
175 2hzc_A Splicing factor U2AF 65 99.8 9.3E-19 3.2E-23 114.0 9.3 73 3-79 3-86 (87)
176 3d2w_A TAR DNA-binding protein 99.8 6.3E-19 2.2E-23 115.0 8.4 74 4-83 9-84 (89)
177 3q2s_C Cleavage and polyadenyl 99.8 3.6E-19 1.2E-23 136.4 8.3 78 5-82 67-149 (229)
178 1x4a_A Splicing factor, argini 99.8 6E-18 2.1E-22 114.9 13.5 84 118-205 16-100 (109)
179 2cpz_A CUG triplet repeat RNA- 99.8 7E-18 2.4E-22 115.7 13.9 83 119-205 20-106 (115)
180 2lea_A Serine/arginine-rich sp 99.8 4E-19 1.4E-23 125.2 7.7 120 46-205 5-128 (135)
181 2lmi_A GRSF-1, G-rich sequence 99.8 2.3E-19 8E-24 121.4 6.3 80 3-83 8-92 (107)
182 1wf0_A TDP-43, TAR DNA-binding 99.8 4.8E-19 1.6E-23 115.6 7.4 77 3-83 2-78 (88)
183 2e5i_A Heterogeneous nuclear r 99.8 4E-18 1.4E-22 117.1 11.6 78 4-84 21-103 (124)
184 2hgn_A Heterogeneous nuclear r 99.8 2.9E-19 1E-23 125.7 5.4 78 4-83 44-123 (139)
185 2cqi_A Nucleolysin TIAR; RNA r 99.8 2E-17 6.9E-22 111.1 14.1 83 120-206 11-95 (103)
186 2dha_A FLJ20171 protein; RRM d 99.8 3.3E-19 1.1E-23 122.8 5.3 79 3-82 20-104 (123)
187 2lcw_A RNA-binding protein FUS 99.6 3.2E-20 1.1E-24 127.6 0.0 81 3-83 4-95 (116)
188 2dgo_A Cytotoxic granule-assoc 99.8 3E-17 1E-21 112.5 14.7 85 119-207 10-98 (115)
189 1sjq_A Polypyrimidine tract-bi 99.8 5.1E-18 1.7E-22 112.8 10.2 76 122-203 14-91 (105)
190 2pe8_A Splicing factor 45; RRM 99.8 4.9E-18 1.7E-22 113.9 10.3 81 2-82 4-93 (105)
191 2hgm_A HNRPF protein, heteroge 99.8 1.2E-18 4E-23 120.4 7.3 77 4-82 40-120 (126)
192 2bz2_A Negative elongation fac 99.8 3.2E-18 1.1E-22 118.1 9.3 75 4-83 37-111 (121)
193 2e5j_A Methenyltetrahydrofolat 99.8 1.7E-17 6E-22 110.1 12.6 80 120-204 15-94 (97)
194 2do4_A Squamous cell carcinoma 99.8 1.8E-17 6.2E-22 110.7 12.7 82 120-205 13-97 (100)
195 2xs2_A Deleted in azoospermia- 99.8 7.6E-19 2.6E-23 117.9 5.7 78 4-83 7-86 (102)
196 2wbr_A GW182, gawky, LD47780P; 99.8 8.2E-18 2.8E-22 106.7 10.1 73 124-202 7-79 (89)
197 3s8s_A Histone-lysine N-methyl 99.8 6.8E-18 2.3E-22 114.4 10.2 78 123-204 5-86 (110)
198 2dnm_A SRP46 splicing factor; 99.8 1.2E-17 4E-22 112.2 11.2 83 119-205 8-94 (103)
199 1x5s_A Cold-inducible RNA-bind 99.8 2.1E-17 7.3E-22 110.8 12.4 80 122-205 10-93 (102)
200 2do0_A HnRNP M, heterogeneous 99.7 4.6E-17 1.6E-21 111.4 14.0 81 121-205 12-95 (114)
201 2cq0_A Eukaryotic translation 99.7 1.4E-17 4.9E-22 111.8 11.2 83 120-206 11-97 (103)
202 2e5h_A Zinc finger CCHC-type a 99.7 9.6E-18 3.3E-22 110.8 10.1 81 118-202 10-94 (94)
203 2dnl_A Cytoplasmic polyadenyla 99.7 1.1E-17 3.7E-22 114.5 10.6 74 4-80 6-85 (114)
204 4f25_A Polyadenylate-binding p 99.7 8.3E-18 2.8E-22 115.2 10.0 77 124-204 5-83 (115)
205 2d9p_A Polyadenylate-binding p 99.7 1.6E-17 5.6E-22 111.6 11.2 82 120-205 11-94 (103)
206 2cq3_A RNA-binding protein 9; 99.7 3.7E-17 1.3E-21 109.8 12.9 83 119-205 10-94 (103)
207 3r27_A HnRNP L, heterogeneous 99.7 9.5E-18 3.2E-22 110.4 9.6 76 122-203 19-96 (100)
208 1x4d_A Matrin 3; structural ge 99.7 6.4E-18 2.2E-22 112.3 8.6 77 122-204 13-92 (102)
209 2dnh_A Bruno-like 5, RNA bindi 99.7 4.4E-17 1.5E-21 109.8 12.9 82 122-207 13-100 (105)
210 3md3_A Nuclear and cytoplasmic 99.7 1E-17 3.6E-22 122.3 10.4 78 4-81 85-165 (166)
211 2ywk_A Putative RNA-binding pr 99.7 1.6E-17 5.5E-22 109.9 10.3 81 118-202 10-93 (95)
212 1whw_A Hypothetical protein ri 99.7 3.8E-17 1.3E-21 108.9 12.2 81 123-207 7-91 (99)
213 4f02_A Polyadenylate-binding p 99.7 7.3E-18 2.5E-22 128.3 9.8 79 5-83 102-181 (213)
214 2cqc_A Arginine/serine-rich sp 99.7 3E-17 1E-21 108.5 11.6 80 119-202 10-93 (95)
215 2dgx_A KIAA0430 protein; RRM d 99.7 2.7E-17 9.1E-22 109.0 11.3 80 122-205 7-91 (96)
216 2hvz_A Splicing factor, argini 99.7 3.2E-17 1.1E-21 109.7 11.7 76 125-205 1-76 (101)
217 2dgp_A Bruno-like 4, RNA bindi 99.7 5.1E-17 1.8E-21 109.7 12.8 82 120-205 9-97 (106)
218 2ad9_A Polypyrimidine tract-bi 99.7 2.3E-17 8E-22 112.3 11.0 78 120-203 27-106 (119)
219 2lxi_A RNA-binding protein 10; 99.7 6.7E-18 2.3E-22 110.6 7.9 77 125-205 2-84 (91)
220 1x5u_A Splicing factor 3B subu 99.7 4.9E-17 1.7E-21 109.6 12.4 81 120-204 11-95 (105)
221 2dnz_A Probable RNA-binding pr 99.7 4.2E-17 1.4E-21 107.9 11.9 80 123-206 4-87 (95)
222 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.8E-17 6.1E-22 107.8 9.8 79 122-204 4-86 (87)
223 2cph_A RNA binding motif prote 99.7 5.6E-17 1.9E-21 109.7 12.6 85 118-206 9-99 (107)
224 2qfj_A FBP-interacting repress 99.7 1.6E-17 5.6E-22 126.5 11.0 80 4-83 123-205 (216)
225 2dgs_A DAZ-associated protein 99.7 4.5E-17 1.6E-21 108.5 11.8 81 121-206 7-91 (99)
226 1x4h_A RNA-binding protein 28; 99.7 5.9E-17 2E-21 110.3 12.6 84 119-206 10-103 (111)
227 1wex_A Hypothetical protein (r 99.7 4.7E-17 1.6E-21 108.9 11.8 77 121-203 12-90 (104)
228 2cqb_A Peptidyl-prolyl CIS-tra 99.7 2.6E-17 8.9E-22 110.4 10.7 81 122-206 10-94 (102)
229 1x5t_A Splicing factor 3B subu 99.7 2.7E-17 9.1E-22 109.1 10.5 80 123-206 4-88 (96)
230 1x4f_A Matrin 3; structural ge 99.7 1.8E-17 6.1E-22 111.7 9.5 77 121-203 22-101 (112)
231 2dnq_A RNA-binding protein 4B; 99.7 6.3E-17 2.2E-21 105.9 11.9 77 122-206 6-82 (90)
232 3u1l_A PRE-mRNA-splicing facto 99.7 7.7E-18 2.6E-22 128.4 8.3 77 4-83 132-229 (240)
233 1wi8_A EIF-4B, eukaryotic tran 99.7 3.6E-17 1.2E-21 110.0 10.7 84 118-207 9-97 (104)
234 4a8x_A RNA-binding protein wit 99.7 2.5E-17 8.4E-22 107.4 9.4 77 124-204 4-85 (88)
235 2cq1_A PTB-like protein L; RRM 99.7 6.4E-17 2.2E-21 107.5 11.3 78 120-203 11-90 (101)
236 2dgt_A RNA-binding protein 30; 99.7 9.7E-17 3.3E-21 105.4 12.0 77 121-205 7-83 (92)
237 3mdf_A Peptidyl-prolyl CIS-tra 99.7 3E-17 1E-21 106.3 9.5 77 122-202 5-85 (85)
238 2cjk_A Nuclear polyadenylated 99.7 9.4E-18 3.2E-22 122.7 7.9 78 5-83 86-166 (167)
239 1fje_B Nucleolin RBD12, protei 99.7 1.3E-17 4.3E-22 123.0 8.6 78 4-83 97-174 (175)
240 2la6_A RNA-binding protein FUS 99.7 7.1E-17 2.4E-21 107.6 11.5 81 118-202 7-99 (99)
241 2dgu_A Heterogeneous nuclear r 99.7 1.5E-16 5.3E-21 106.7 13.1 76 123-206 10-85 (103)
242 2dng_A Eukaryotic translation 99.7 7.9E-17 2.7E-21 108.2 11.7 81 119-205 10-94 (103)
243 2dnp_A RNA-binding protein 14; 99.7 7.5E-17 2.6E-21 105.5 11.2 76 122-205 7-82 (90)
244 1wf1_A RNA-binding protein RAL 99.7 1.9E-16 6.6E-21 107.5 13.7 74 122-203 25-99 (110)
245 2dhg_A TRNA selenocysteine ass 99.7 1.2E-16 4E-21 107.5 12.3 80 122-205 7-91 (104)
246 1x4g_A Nucleolysin TIAR; struc 99.7 1E-16 3.5E-21 108.7 12.0 79 122-206 23-101 (109)
247 1u6f_A Tcubp1, RNA-binding pro 99.7 2.8E-16 9.5E-21 111.4 14.7 84 119-206 37-124 (139)
248 1why_A Hypothetical protein ri 99.7 1.3E-16 4.5E-21 105.9 12.2 80 122-205 15-94 (97)
249 2dgv_A HnRNP M, heterogeneous 99.7 8.6E-17 2.9E-21 105.7 11.1 79 122-204 6-86 (92)
250 2cpf_A RNA binding motif prote 99.7 5.1E-17 1.7E-21 108.1 10.0 79 123-205 4-89 (98)
251 2j8a_A Histone-lysine N-methyl 99.7 9.9E-18 3.4E-22 113.4 6.4 76 7-82 3-95 (136)
252 1p27_B RNA-binding protein 8A; 99.7 7.1E-17 2.4E-21 109.0 10.8 79 121-203 20-102 (106)
253 2cpj_A Non-POU domain-containi 99.7 1.2E-16 4.2E-21 106.4 11.8 78 122-205 13-90 (99)
254 2kxn_B Transformer-2 protein h 99.7 4.3E-17 1.5E-21 113.8 9.8 81 120-204 42-126 (129)
255 2jvo_A Nucleolar protein 3; nu 99.7 4.6E-17 1.6E-21 110.1 9.7 79 121-207 28-106 (108)
256 2cpx_A Hypothetical protein FL 99.7 2.7E-16 9.2E-21 107.7 13.5 81 122-206 23-107 (115)
257 2ytc_A PRE-mRNA-splicing facto 99.7 6.2E-17 2.1E-21 104.7 9.8 77 120-202 8-85 (85)
258 1h2v_Z 20 kDa nuclear CAP bind 99.7 7.4E-17 2.5E-21 116.6 11.3 78 122-203 37-118 (156)
259 2dit_A HIV TAT specific factor 99.7 5E-17 1.7E-21 110.8 9.8 79 4-83 13-102 (112)
260 2yh0_A Splicing factor U2AF 65 99.7 2.9E-17 9.9E-22 123.5 9.5 80 4-83 112-194 (198)
261 2cqd_A RNA-binding region cont 99.7 1.5E-16 5.1E-21 109.2 12.2 81 118-203 11-95 (116)
262 2e44_A Insulin-like growth fac 99.7 1.1E-16 3.8E-21 106.0 11.2 79 121-203 12-91 (96)
263 2lkz_A RNA-binding protein 5; 99.7 1.7E-17 5.7E-22 109.2 7.0 74 125-202 10-93 (95)
264 3md1_A Nuclear and cytoplasmic 99.7 7.6E-17 2.6E-21 103.8 10.0 76 125-204 2-81 (83)
265 1l3k_A Heterogeneous nuclear r 99.7 3.4E-17 1.2E-21 122.9 9.6 80 5-85 103-185 (196)
266 1sjr_A Polypyrimidine tract-bi 99.7 9.7E-17 3.3E-21 114.7 11.4 81 121-203 43-123 (164)
267 2dh8_A DAZ-associated protein 99.7 1.1E-16 3.8E-21 107.8 11.2 80 120-204 12-95 (105)
268 2g4b_A Splicing factor U2AF 65 99.7 2E-17 7E-22 121.5 8.2 76 5-80 93-171 (172)
269 2cpe_A RNA-binding protein EWS 99.7 1.1E-16 3.8E-21 109.3 11.3 83 120-206 11-105 (113)
270 2jrs_A RNA-binding protein 39; 99.7 1.3E-16 4.3E-21 107.9 11.2 82 118-203 20-105 (108)
271 2x1f_A MRNA 3'-END-processing 99.7 7.2E-17 2.5E-21 106.9 9.7 77 124-204 2-82 (96)
272 2khc_A Testis-specific RNP-typ 99.7 1.6E-16 5.5E-21 109.4 11.8 80 119-202 35-118 (118)
273 3p5t_L Cleavage and polyadenyl 99.7 3E-17 1E-21 107.4 7.7 76 125-204 2-83 (90)
274 2div_A TRNA selenocysteine ass 99.7 1.6E-16 5.5E-21 105.8 11.4 79 122-204 7-94 (99)
275 2cpd_A Apobec-1 stimulating pr 99.7 2.9E-16 9.8E-21 104.6 12.6 76 121-204 12-89 (99)
276 2err_A Ataxin-2-binding protei 99.7 9.5E-17 3.2E-21 108.8 9.8 80 120-203 25-106 (109)
277 1oo0_B CG8781-PA, drosophila Y 99.7 8.6E-17 2.9E-21 109.3 9.6 81 119-203 21-105 (110)
278 2cqp_A RNA-binding protein 12; 99.7 6E-17 2.1E-21 107.7 8.6 79 122-204 13-95 (98)
279 3ulh_A THO complex subunit 4; 99.7 1.4E-16 4.7E-21 107.7 10.5 79 120-202 25-106 (107)
280 1b7f_A Protein (SXL-lethal pro 99.7 6.4E-17 2.2E-21 118.4 9.5 77 4-80 87-168 (168)
281 2voo_A Lupus LA protein; RNA-b 99.7 8.2E-17 2.8E-21 120.1 10.1 77 6-83 109-187 (193)
282 3nmr_A Cugbp ELAV-like family 99.7 6.6E-17 2.3E-21 119.0 9.5 78 4-81 93-175 (175)
283 2cpi_A CCR4-NOT transcription 99.7 9.6E-17 3.3E-21 109.2 9.3 81 121-205 12-102 (111)
284 2kt5_A RNA and export factor-b 99.7 1.5E-15 5.3E-20 105.3 15.5 80 120-203 31-113 (124)
285 2cqh_A IGF-II mRNA-binding pro 99.7 2.2E-16 7.4E-21 104.0 10.5 78 123-207 7-86 (93)
286 2hgl_A HNRPF protein, heteroge 99.7 8.2E-17 2.8E-21 112.8 8.6 80 118-202 38-123 (136)
287 2db1_A Heterogeneous nuclear r 99.7 1E-16 3.5E-21 110.1 9.0 80 118-202 11-96 (118)
288 1x5o_A RNA binding motif, sing 99.7 8E-16 2.7E-20 105.2 13.1 83 120-202 21-110 (114)
289 3ns6_A Eukaryotic translation 99.7 7.3E-17 2.5E-21 107.6 7.6 76 123-202 5-91 (100)
290 2kvi_A Nuclear polyadenylated 99.7 1.4E-16 4.7E-21 105.5 8.8 75 122-204 8-83 (96)
291 2e5i_A Heterogeneous nuclear r 99.7 9.2E-16 3.1E-20 105.3 13.1 77 123-203 24-101 (124)
292 2xnq_A Nuclear polyadenylated 99.7 2.7E-16 9.2E-21 104.2 10.2 77 119-203 17-94 (97)
293 2fc9_A NCL protein; structure 99.7 1.3E-16 4.5E-21 106.7 8.7 80 121-204 12-91 (101)
294 2a3j_A U1 small nuclear ribonu 99.7 3.6E-16 1.2E-20 108.3 11.1 79 122-204 27-110 (127)
295 1whx_A Hypothetical protein ri 99.7 1.1E-16 3.7E-21 108.8 8.3 75 123-203 9-83 (111)
296 1fxl_A Paraneoplastic encephal 99.7 1.5E-16 5.1E-21 116.2 9.6 77 4-80 86-167 (167)
297 2cq2_A Hypothetical protein LO 99.7 1.6E-16 5.3E-21 107.1 8.7 81 122-204 23-106 (114)
298 1s79_A Lupus LA protein; RRM, 99.7 2.7E-16 9.4E-21 105.1 9.7 76 122-202 9-87 (103)
299 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 7.4E-16 2.5E-20 109.3 12.6 78 120-201 59-140 (140)
300 3lqv_A PRE-mRNA branch site pr 99.7 3.7E-16 1.3E-20 107.0 10.6 77 122-202 6-83 (115)
301 2la4_A Nuclear and cytoplasmic 99.7 3.3E-16 1.1E-20 104.7 10.1 75 122-202 25-99 (101)
302 3pgw_A U1-A; protein-RNA compl 99.7 2.2E-16 7.5E-21 125.2 10.8 76 4-81 205-281 (282)
303 2dgw_A Probable RNA-binding pr 99.7 5.5E-16 1.9E-20 101.6 10.9 78 121-204 7-87 (91)
304 1p1t_A Cleavage stimulation fa 99.7 2E-16 6.9E-21 106.4 8.9 80 122-205 6-89 (104)
305 2jwn_A Embryonic polyadenylate 99.7 3.3E-16 1.1E-20 108.8 10.0 76 123-203 35-114 (124)
306 3v4m_A Splicing factor U2AF 65 99.7 1.9E-16 6.4E-21 106.2 8.4 80 3-82 2-96 (105)
307 1wez_A HnRNP H', FTP-3, hetero 99.7 4.6E-16 1.6E-20 103.9 10.2 77 121-203 12-91 (102)
308 1qm9_A Polypyrimidine tract-bi 99.7 1.6E-16 5.4E-21 119.5 9.0 78 4-83 118-197 (198)
309 2m2b_A RNA-binding protein 10; 99.7 4.5E-16 1.5E-20 109.1 10.7 78 121-203 20-107 (131)
310 2cqg_A TDP-43, TAR DNA-binding 99.7 1.5E-15 5E-20 101.9 12.8 80 119-204 10-93 (103)
311 2cq4_A RNA binding motif prote 99.7 3.5E-16 1.2E-20 107.0 9.8 76 122-202 23-102 (114)
312 3n9u_C Cleavage and polyadenyl 99.7 3.8E-16 1.3E-20 112.4 10.4 76 123-202 54-135 (156)
313 2dnn_A RNA-binding protein 12; 99.7 2.8E-16 9.6E-21 105.9 9.1 78 119-202 11-91 (109)
314 1x5p_A Negative elongation fac 99.7 1.2E-15 4.1E-20 101.1 12.0 78 122-207 13-90 (97)
315 3ucg_A Polyadenylate-binding p 99.7 4.7E-16 1.6E-20 101.5 9.8 75 124-203 6-84 (89)
316 3s7r_A Heterogeneous nuclear r 99.7 5.5E-16 1.9E-20 100.7 9.9 76 121-201 8-87 (87)
317 1x4e_A RNA binding motif, sing 99.7 6.9E-17 2.4E-21 104.5 5.4 74 123-200 4-81 (85)
318 3zzy_A Polypyrimidine tract-bi 99.7 3.6E-16 1.2E-20 107.8 9.2 81 120-203 24-105 (130)
319 2adc_A Polypyrimidine tract-bi 99.7 4E-16 1.4E-20 120.0 10.5 78 4-83 149-228 (229)
320 3tyt_A Heterogeneous nuclear r 99.7 1.7E-16 5.8E-21 119.7 8.1 77 4-80 121-204 (205)
321 1wel_A RNA-binding protein 12; 99.7 2.3E-16 7.8E-21 109.5 8.1 78 120-202 21-102 (124)
322 1x4b_A Heterogeneous nuclear r 99.7 8.3E-16 2.9E-20 105.4 10.8 79 122-205 25-107 (116)
323 2ek1_A RNA-binding protein 12; 99.7 1.1E-16 3.9E-21 105.8 6.2 76 123-202 14-93 (95)
324 1wg5_A Heterogeneous nuclear r 99.7 4.7E-16 1.6E-20 104.4 9.1 79 120-203 11-93 (104)
325 2hgn_A Heterogeneous nuclear r 99.7 5.1E-17 1.8E-21 114.2 4.5 79 121-205 43-124 (139)
326 2krb_A Eukaryotic translation 99.7 2E-16 6.7E-21 101.4 6.6 70 125-198 2-80 (81)
327 2mss_A Protein (musashi1); RNA 99.7 2.9E-16 1E-20 99.0 7.2 71 126-201 1-75 (75)
328 2diu_A KIAA0430 protein; struc 99.7 9.3E-16 3.2E-20 98.2 9.3 71 125-205 10-85 (96)
329 2nlw_A Eukaryotic translation 99.6 7.5E-16 2.6E-20 103.6 9.4 77 123-203 14-99 (105)
330 1uaw_A Mouse-musashi-1; RNP-ty 99.6 5.3E-16 1.8E-20 98.4 7.5 72 125-201 1-76 (77)
331 2e5g_A U6 snRNA-specific termi 99.6 1.6E-15 5.6E-20 99.9 10.0 73 124-203 8-81 (94)
332 2dis_A Unnamed protein product 99.6 3.3E-15 1.1E-19 101.3 11.6 78 123-204 7-92 (109)
333 2cpy_A RNA-binding protein 12; 99.6 6.9E-16 2.4E-20 105.4 8.2 77 121-202 12-92 (114)
334 2rs2_A Musashi-1, RNA-binding 99.6 1.1E-15 3.8E-20 103.5 9.1 79 122-205 23-105 (109)
335 2d9o_A DNAJ (HSP40) homolog, s 99.6 5.5E-15 1.9E-19 97.7 12.1 77 4-84 8-91 (100)
336 1nu4_A U1A RNA binding domain; 99.6 8.9E-16 3E-20 101.8 8.3 80 121-204 5-89 (97)
337 1fjc_A Nucleolin RBD2, protein 99.6 5.4E-16 1.9E-20 102.7 7.2 78 121-203 13-90 (96)
338 2hzc_A Splicing factor U2AF 65 99.6 1.5E-15 5.1E-20 98.6 9.1 72 122-200 4-86 (87)
339 2fc8_A NCL protein; structure 99.6 3.1E-15 1E-19 100.2 10.8 80 120-206 11-94 (102)
340 2j76_E EIF-4B, EIF4B, eukaryot 99.6 2.8E-16 9.6E-21 104.8 5.6 79 119-203 14-97 (100)
341 3tht_A Alkylated DNA repair pr 99.6 9.7E-16 3.3E-20 123.0 9.5 77 2-81 14-97 (345)
342 2ki2_A SS-DNA binding protein 99.6 4.7E-16 1.6E-20 101.7 6.3 74 125-203 2-79 (90)
343 1fj7_A Nucleolin RBD1, protein 99.6 2.9E-15 9.8E-20 100.1 10.3 77 122-204 15-95 (101)
344 3ue2_A Poly(U)-binding-splicin 99.6 4E-16 1.4E-20 106.5 5.5 79 4-82 18-108 (118)
345 2lmi_A GRSF-1, G-rich sequence 99.6 7.3E-16 2.5E-20 104.1 6.7 77 121-202 8-90 (107)
346 1wg1_A KIAA1579 protein, homol 99.6 1.4E-15 4.7E-20 99.0 7.3 74 123-203 4-77 (88)
347 3q2s_C Cleavage and polyadenyl 99.6 2.3E-15 7.7E-20 115.3 9.4 76 123-202 67-148 (229)
348 3egn_A RNA-binding protein 40; 99.6 3.5E-15 1.2E-19 106.2 9.7 79 122-204 43-130 (143)
349 1iqt_A AUF1, heterogeneous nuc 99.6 1.3E-15 4.5E-20 96.0 6.7 71 126-201 1-75 (75)
350 2f3j_A RNA and export factor b 99.6 5.1E-15 1.7E-19 108.8 10.4 78 121-202 85-165 (177)
351 2bz2_A Negative elongation fac 99.6 5.2E-15 1.8E-19 101.9 9.7 77 122-206 37-113 (121)
352 2dha_A FLJ20171 protein; RRM d 99.6 2.8E-15 9.7E-20 103.1 8.1 77 121-202 20-103 (123)
353 2hgm_A HNRPF protein, heteroge 99.6 1.9E-15 6.7E-20 104.2 7.2 77 120-202 38-119 (126)
354 1jmt_A Splicing factor U2AF 35 99.6 4.1E-16 1.4E-20 104.4 3.6 70 11-80 20-103 (104)
355 3sde_A Paraspeckle component 1 99.6 7E-15 2.4E-19 115.2 9.8 80 4-83 94-179 (261)
356 3s6e_A RNA-binding protein 39; 99.6 1.4E-14 4.8E-19 98.1 9.2 78 4-82 5-92 (114)
357 2lcw_A RNA-binding protein FUS 99.3 1.9E-16 6.6E-21 108.6 0.0 80 123-206 6-97 (116)
358 2xs2_A Deleted in azoospermia- 99.6 6.7E-15 2.3E-19 98.5 7.3 76 121-202 6-84 (102)
359 3d2w_A TAR DNA-binding protein 99.6 7.4E-15 2.5E-19 95.5 6.8 77 120-203 7-83 (89)
360 2j8a_A Histone-lysine N-methyl 99.6 2.2E-14 7.6E-19 97.1 8.9 75 125-203 3-95 (136)
361 2dit_A HIV TAT specific factor 99.5 1.2E-13 4.2E-18 93.8 11.9 79 122-204 13-102 (112)
362 1wf0_A TDP-43, TAR DNA-binding 99.5 9.2E-15 3.1E-19 95.0 6.1 75 123-204 4-78 (88)
363 2voo_A Lupus LA protein; RNA-b 99.5 1.1E-13 3.9E-18 103.1 12.1 76 123-203 108-186 (193)
364 2pe8_A Splicing factor 45; RRM 99.5 7.4E-14 2.5E-18 93.4 9.4 77 122-202 6-92 (105)
365 3u1l_A PRE-mRNA-splicing facto 99.5 2.8E-14 9.4E-19 108.8 8.0 82 122-205 132-230 (240)
366 2dnl_A Cytoplasmic polyadenyla 99.5 8.8E-14 3E-18 94.9 9.6 64 123-187 7-80 (114)
367 1owx_A Lupus LA protein, SS-B, 99.4 5.2E-13 1.8E-17 90.4 9.0 75 4-81 16-94 (121)
368 3v4m_A Splicing factor U2AF 65 99.4 4.9E-13 1.7E-17 89.4 7.5 76 123-202 4-95 (105)
369 3s6e_A RNA-binding protein 39; 99.4 1.3E-12 4.5E-17 88.4 8.9 77 122-202 5-91 (114)
370 3ue2_A Poly(U)-binding-splicin 99.4 8.9E-13 3.1E-17 89.9 7.6 76 123-202 19-107 (118)
371 2dnr_A Synaptojanin-1; RRM dom 99.4 2.8E-12 9.6E-17 81.3 8.1 75 3-83 4-86 (91)
372 3tht_A Alkylated DNA repair pr 99.3 1.3E-12 4.4E-17 104.9 7.1 80 120-202 14-97 (345)
373 1jmt_A Splicing factor U2AF 35 99.3 5E-13 1.7E-17 89.3 3.6 69 129-201 20-103 (104)
374 2d9o_A DNAJ (HSP40) homolog, s 99.3 4.6E-11 1.6E-15 78.8 11.4 74 125-205 11-91 (100)
375 1ufw_A Synaptojanin 2; RNP dom 99.2 1.9E-11 6.5E-16 77.9 5.3 73 3-81 12-93 (95)
376 1owx_A Lupus LA protein, SS-B, 99.2 4.3E-11 1.5E-15 81.0 7.2 76 119-200 13-92 (121)
377 2dnr_A Synaptojanin-1; RRM dom 99.2 1.3E-10 4.5E-15 73.7 7.7 73 123-204 6-86 (91)
378 1ufw_A Synaptojanin 2; RNP dom 99.1 6.2E-10 2.1E-14 70.9 7.8 72 122-202 13-93 (95)
379 3dxb_A Thioredoxin N-terminall 99.1 3.9E-10 1.3E-14 86.0 7.7 78 5-82 123-212 (222)
380 2l9w_A U4/U6 snRNA-associated- 98.9 1.2E-08 4.2E-13 66.2 8.7 73 4-79 19-96 (117)
381 2dhx_A Poly (ADP-ribose) polym 98.8 5.8E-08 2E-12 62.6 10.3 74 4-83 6-84 (104)
382 2l9w_A U4/U6 snRNA-associated- 98.8 4.2E-08 1.4E-12 63.7 9.6 70 124-199 21-95 (117)
383 3dxb_A Thioredoxin N-terminall 98.7 1.8E-08 6.2E-13 76.7 7.1 63 136-202 141-211 (222)
384 1wey_A Calcipressin 1; structu 98.5 7E-07 2.4E-11 57.9 7.4 77 4-83 3-84 (104)
385 1uw4_A UPF3X; nonsense mediate 98.1 1E-05 3.4E-10 51.6 7.1 65 7-71 2-71 (91)
386 1whv_A Poly(A)-specific ribonu 98.0 2.3E-05 7.9E-10 49.9 6.7 54 6-65 16-69 (100)
387 1wwh_A Nucleoporin 35, nucleop 97.9 0.0001 3.6E-09 49.1 9.0 71 6-81 24-95 (119)
388 1wey_A Calcipressin 1; structu 97.9 6.4E-05 2.2E-09 48.7 7.0 72 125-202 6-82 (104)
389 3ctr_A Poly(A)-specific ribonu 97.8 3E-05 1E-09 49.5 4.5 54 7-66 7-60 (101)
390 1uw4_A UPF3X; nonsense mediate 97.7 0.00028 9.5E-09 44.9 8.0 64 125-188 2-71 (91)
391 3p3d_A Nucleoporin 53; structu 97.6 0.00014 4.9E-09 49.1 5.5 76 5-82 6-98 (132)
392 2dhx_A Poly (ADP-ribose) polym 97.6 0.0012 4.2E-08 42.5 9.5 69 124-201 8-81 (104)
393 2l08_A Regulator of nonsense t 97.5 0.00011 3.8E-09 47.0 4.2 75 6-80 9-93 (97)
394 1whv_A Poly(A)-specific ribonu 97.5 0.00052 1.8E-08 43.7 6.7 53 126-183 18-70 (100)
395 1wwh_A Nucleoporin 35, nucleop 97.4 0.0008 2.8E-08 44.8 7.7 72 122-200 22-93 (119)
396 3pq1_A Poly(A) RNA polymerase; 97.4 0.0001 3.5E-09 61.3 4.0 56 5-63 52-107 (464)
397 3ctr_A Poly(A)-specific ribonu 97.2 0.00055 1.9E-08 43.8 4.8 53 126-183 8-60 (101)
398 3pq1_A Poly(A) RNA polymerase; 96.7 0.0013 4.5E-08 54.8 4.4 55 124-180 53-107 (464)
399 2l08_A Regulator of nonsense t 96.5 0.002 6.9E-08 41.2 3.4 66 124-189 9-80 (97)
400 3p3d_A Nucleoporin 53; structu 95.8 0.017 5.8E-07 39.1 5.0 72 124-201 7-96 (132)
401 3d45_A Poly(A)-specific ribonu 93.9 0.14 4.9E-06 43.4 7.0 55 6-66 440-494 (507)
402 4eyt_A Telomerase associated p 89.5 2.5 8.6E-05 26.2 7.4 58 123-184 11-68 (129)
403 2g0c_A ATP-dependent RNA helic 88.9 1.7 5.9E-05 26.1 6.2 68 8-81 2-75 (76)
404 3d45_A Poly(A)-specific ribonu 88.8 1.2 4.1E-05 37.8 7.2 55 125-184 441-495 (507)
405 4eyt_A Telomerase associated p 81.1 7.6 0.00026 24.0 8.3 69 4-79 10-78 (129)
406 3j21_T 50S ribosomal protein L 70.2 17 0.00056 22.5 5.8 55 9-63 25-81 (86)
407 4e8u_A Putative uncharacterize 68.0 9.6 0.00033 27.0 4.8 55 9-63 15-81 (172)
408 1vq8_S 50S ribosomal protein L 63.9 18 0.00062 22.3 5.0 55 9-63 24-80 (85)
409 3ts2_A Protein LIN-28 homolog 57.9 1.4 4.9E-05 30.5 -0.9 28 21-53 2-29 (148)
410 4e8u_A Putative uncharacterize 48.4 69 0.0024 22.6 6.6 50 125-174 13-74 (172)
411 3u5e_X 60S ribosomal protein L 46.9 45 0.0015 22.7 5.1 55 9-63 81-137 (142)
412 4a17_R RPL23A, 60S ribosomal p 46.6 47 0.0016 22.9 5.2 54 10-63 90-145 (150)
413 2zkr_s 60S ribosomal protein L 46.5 51 0.0017 22.9 5.4 55 9-63 95-151 (156)
414 3iz5_X 60S ribosomal protein L 43.8 40 0.0014 23.3 4.6 54 10-63 92-147 (152)
415 2e5p_A Protein PHF1, PHD finge 41.7 13 0.00045 21.5 1.6 11 45-55 37-47 (68)
416 3j21_T 50S ribosomal protein L 40.2 64 0.0022 19.8 6.8 54 128-181 26-82 (86)
417 3fut_A Dimethyladenosine trans 39.0 29 0.00098 26.6 3.7 30 6-36 110-139 (271)
418 3swz_A Steroid 17-alpha-hydrox 38.8 59 0.002 26.8 6.0 59 9-74 17-79 (494)
419 3fry_A Probable copper-exporti 38.5 55 0.0019 18.6 5.7 56 6-65 6-61 (73)
420 4bby_A Alkyldihydroxyacetoneph 37.2 29 0.001 30.4 3.9 54 12-65 349-408 (658)
421 2eqj_A Metal-response element- 36.9 17 0.00058 21.1 1.6 12 44-55 40-51 (66)
422 2cu1_A Mitogen-activated prote 35.5 77 0.0026 20.1 4.5 53 129-185 21-74 (103)
423 3uzu_A Ribosomal RNA small sub 34.0 18 0.0006 27.9 1.8 32 7-38 115-146 (279)
424 3h7h_B Transcription elongatio 33.5 62 0.0021 20.8 4.1 35 32-68 40-74 (106)
425 3u5e_X 60S ribosomal protein L 32.3 1.2E+02 0.0041 20.7 6.9 55 127-181 81-138 (142)
426 2m0o_A PHD finger protein 1; t 31.8 23 0.00079 21.2 1.6 11 45-55 54-64 (79)
427 2od0_A Hypothetical protein VP 31.6 51 0.0018 20.9 3.5 22 18-39 4-25 (105)
428 4a17_R RPL23A, 60S ribosomal p 31.3 1.3E+02 0.0044 20.7 6.8 55 127-181 89-146 (150)
429 3lpe_A Putative transcription 31.2 95 0.0032 19.2 6.2 34 150-184 39-72 (92)
430 3iz5_X 60S ribosomal protein L 30.8 1.3E+02 0.0045 20.7 6.0 54 127-180 91-147 (152)
431 3tbg_A Cytochrome P450 2D6; mo 30.2 41 0.0014 27.5 3.5 48 10-63 20-70 (479)
432 1qyr_A KSGA, high level kasuga 28.5 43 0.0015 25.2 3.1 29 7-35 91-119 (252)
433 2kpo_A Rossmann 2X2 fold prote 28.4 72 0.0025 19.1 3.4 49 18-76 33-82 (110)
434 2lsl_A Telomerase associated p 34.3 12 0.00042 23.3 0.0 22 163-184 78-99 (137)
435 3tqs_A Ribosomal RNA small sub 28.1 19 0.00064 27.3 1.0 31 8-38 98-128 (255)
436 3ftd_A Dimethyladenosine trans 27.4 41 0.0014 25.3 2.8 30 7-36 96-125 (249)
437 2k5n_A Putative cold-shock pro 25.6 26 0.00089 20.8 1.1 11 44-54 13-23 (74)
438 1x8d_A Hypothetical protein YI 25.5 1.3E+02 0.0046 19.0 5.0 32 22-54 28-60 (104)
439 1eij_A Hypothetical protein MT 24.6 58 0.002 19.8 2.5 20 12-31 50-69 (80)
440 2cfx_A HTH-type transcriptiona 24.5 1.6E+02 0.0054 19.5 6.4 47 138-184 78-124 (144)
441 1i4w_A Mitochondrial replicati 24.2 61 0.0021 25.9 3.4 22 8-29 144-165 (353)
442 4hcz_A PHD finger protein 1; p 23.8 41 0.0014 18.9 1.6 11 45-55 31-41 (58)
443 2kcm_A Cold shock domain famil 23.6 30 0.001 20.6 1.1 11 44-54 11-21 (74)
444 2ns6_A Mobilization protein A; 23.6 1.6E+02 0.0056 20.9 5.2 46 7-53 72-125 (185)
445 2uuu_A Alkyldihydroxyacetoneph 23.3 61 0.0021 28.0 3.4 52 14-65 281-338 (584)
446 3pm9_A Putative oxidoreductase 23.0 81 0.0028 26.4 4.0 52 14-65 194-251 (476)
447 1gcc_A Ethylene responsive ele 22.9 59 0.002 18.5 2.3 19 45-63 26-44 (63)
448 1c9o_A CSPB, cold-shock protei 22.7 32 0.0011 19.8 1.1 10 44-53 12-21 (66)
449 3cam_A Cold-shock domain famil 22.1 34 0.0011 19.8 1.1 10 44-53 12-21 (67)
450 1wvf_A 4-cresol dehydrogenase 22.0 48 0.0017 28.0 2.5 41 22-62 217-261 (520)
451 2zkr_s 60S ribosomal protein L 21.4 2.1E+02 0.0072 19.8 6.8 54 127-180 95-151 (156)
452 3a0j_A Cold shock protein; OB- 21.3 36 0.0012 20.1 1.1 10 44-53 12-21 (73)
453 2fh0_A Hypothetical 16.0 kDa p 21.2 73 0.0025 19.4 2.5 19 12-30 48-66 (81)
454 1fme_A FSD-EY peptide; beta-BE 20.6 70 0.0024 14.2 1.7 13 19-31 14-26 (28)
455 1g6p_A Cold shock protein TMCS 20.6 38 0.0013 19.5 1.1 11 44-54 11-21 (66)
456 2lfv_A Protein DAMX; cell divi 25.8 21 0.00073 23.0 0.0 51 135-186 33-88 (106)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=4.6e-37 Score=234.77 Aligned_cols=163 Identities=23% Similarity=0.374 Sum_probs=144.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
.|.++|||+|||+++|+++|+++|++||+|.+|.|+. ++.++|||||+|.+.++|.+|+..|++..+.|+.|.+.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 5789999999999999999999999999999999965 4678999999999999999999999999999999999988
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCC
Q 025499 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (252)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~ 160 (252)
..... .......+|||+|||..+++++|+++|+.||.|+.+.++.+.
T Consensus 93 ~~~~~---------------------------------~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~ 139 (213)
T 4f02_A 93 QRDPS---------------------------------LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE 139 (213)
T ss_dssp CCCTH---------------------------------HHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET
T ss_pred ccccc---------------------------------ccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC
Confidence 65411 011123589999999999999999999999999999998876
Q ss_pred CC--cEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeecCC
Q 025499 161 EG--TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (252)
Q Consensus 161 ~~--~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~~~ 203 (252)
.. |||||+|.+.++|.+|++.|||..|. |+.|.|..+..
T Consensus 140 ~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~----g~~i~V~~a~~ 180 (213)
T 4f02_A 140 NGSKGYGFVHFETQEAAERAIEKMNGMLLN----DRKVFVGRFKS 180 (213)
T ss_dssp TEEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEEEECCC
T ss_pred CCCceEEEEEeCCHHHHHHHHHHhCCCEEC----CEEEEEEEcCC
Confidence 43 69999999999999999999999999 99999998873
No 2
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=7.3e-36 Score=225.90 Aligned_cols=196 Identities=14% Similarity=0.124 Sum_probs=146.6
Q ss_pred CCCcEEEEcCCC-CCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecCC
Q 025499 4 RFSRTIYVGNLP-SDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (252)
Q Consensus 4 ~~~~~l~v~~lp-~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (252)
.++++|||+||| ..+|+++|+++|++||.|.+|.+..+ .+|||||+|.+.++|++|++.|||..+.|++|.|.++..
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS--KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT--STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 578999999999 79999999999999999999999764 479999999999999999999999999999999999975
Q ss_pred CCCCCCCCCCCC-CCCC-CCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCc--eEEEEee
Q 025499 83 GSGRGPSSSDRR-GGYG-GGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDV--CFAEVSR 158 (252)
Q Consensus 83 ~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v--~~~~~~~ 158 (252)
............ .... ........................+..+|||+|||..+++++|+++|++||.| ..+.++.
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~ 159 (205)
T 3tyt_A 80 PAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFS 159 (205)
T ss_dssp SCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECS
T ss_pred CccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEc
Confidence 432110000000 0000 00000000000000000001112456799999999999999999999999998 8898887
Q ss_pred CCC--CcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeec
Q 025499 159 DSE--GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (252)
Q Consensus 159 ~~~--~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (252)
+.. .|+|||+|.+.++|..||..|||..+.+......+.|+.+
T Consensus 160 ~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 160 GKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 642 3799999999999999999999999998777778887753
No 3
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1.4e-35 Score=218.42 Aligned_cols=160 Identities=23% Similarity=0.323 Sum_probs=142.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 025499 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (252)
Q Consensus 5 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (252)
++++|||+|||+++|+++|+++|+.||+|.+|.+.. ++.++|||||+|.+.++|.+|+..|+|..+.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 689999999999999999999999999999999954 56688999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCC
Q 025499 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (252)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~ 161 (252)
+... .....+|||+|||..+++++|+++|++||.|..+.+..+..
T Consensus 82 ~~~~-----------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 126 (168)
T 1b7f_A 82 PGGE-----------------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKL 126 (168)
T ss_dssp CCSS-----------------------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTT
T ss_pred CCcc-----------------------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCC
Confidence 6521 12347999999999999999999999999999999998763
Q ss_pred C----cEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeec
Q 025499 162 G----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (252)
Q Consensus 162 ~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (252)
+ |+|||+|.+.++|.+|+..|||..+.+. ++.|.|..+
T Consensus 127 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~~~l~V~~A 168 (168)
T 1b7f_A 127 TGRPRGVAFVRYNKREEAQEAISALNNVIPEGG--SQPLSVRLA 168 (168)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC--SSCCEEEEC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhcCCEecCC--CeEEEEEeC
Confidence 3 6999999999999999999999999711 388888764
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-35 Score=217.24 Aligned_cols=159 Identities=21% Similarity=0.370 Sum_probs=142.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecC--CCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecCCCC
Q 025499 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (252)
Q Consensus 7 ~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 84 (252)
++|||+|||+++|+++|.++|++||+|.+|.+..+ +.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 58999999999999999999999999999999643 5678999999999999999998899999999999999987552
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC--
Q 025499 85 GRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG-- 162 (252)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~-- 162 (252)
. .......+|||+|||..+++++|.++|+.||.|..+.+..+..+
T Consensus 81 ~---------------------------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~ 127 (166)
T 3md3_A 81 Q---------------------------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGS 127 (166)
T ss_dssp C---------------------------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCC
T ss_pred C---------------------------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCC
Confidence 1 11234579999999999999999999999999999999987543
Q ss_pred --cEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeecC
Q 025499 163 --TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (252)
Q Consensus 163 --~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~~ 202 (252)
|+|||+|.+.++|..|+..|||..+. |+.|.|..++
T Consensus 128 ~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~i~v~~a~ 165 (166)
T 3md3_A 128 SRGYGFVSFTSQDDAQNAMDSMQGQDLN----GRPLRINWAA 165 (166)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHTTCEET----TEECEEEESC
T ss_pred cceEEEEEeCCHHHHHHHHHHhCCCccC----CcEEEEEecC
Confidence 69999999999999999999999999 9999999875
No 5
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=3.9e-35 Score=215.81 Aligned_cols=157 Identities=23% Similarity=0.347 Sum_probs=140.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 025499 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (252)
Q Consensus 5 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (252)
++++|||+|||+++|+++|+++|+.||+|.+|.+.. ++.++|||||+|.+.++|.+|+..|+|..+.|++|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 478999999999999999999999999999999955 46778999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCC
Q 025499 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (252)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~ 161 (252)
+... .....+|||+|||..+++++|+++|++||.|..+.+..+..
T Consensus 81 ~~~~-----------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 125 (167)
T 1fxl_A 81 PSSA-----------------------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 125 (167)
T ss_dssp CCCG-----------------------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred CCcc-----------------------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCC
Confidence 5411 12346899999999999999999999999999999988763
Q ss_pred C----cEEEEEcCChhHHHHHHHHhcCccccCCCCCce--eEeee
Q 025499 162 G----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR--ITVKR 200 (252)
Q Consensus 162 ~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~--i~v~~ 200 (252)
+ |+|||+|.+.++|.+|+..|||..+. |+. |.|..
T Consensus 126 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~~~i~v~~ 166 (167)
T 1fxl_A 126 TGVSRGVGFIRFDKRIEAEEAIKGLNGQKPS----GATEPITVKF 166 (167)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCCCT----TCSSCCEEEE
T ss_pred CCCccceEEEEeCCHHHHHHHHHHhcCCccC----CCccceEEEe
Confidence 3 69999999999999999999999998 654 66654
No 6
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=4.7e-35 Score=220.99 Aligned_cols=166 Identities=13% Similarity=0.248 Sum_probs=141.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
.+.++|||+|||+++|+++|+++|+.||+|.+|.+.. ++.++|||||+|.+.++|.+|+. +++..+.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeeeecc
Confidence 5688999999999999999999999999999999965 46678999999999999999999 5899999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCC
Q 025499 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (252)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~ 160 (252)
........ ........+|||+|||..+++++|+++|+.||.|..+.+..+.
T Consensus 90 ~~~~~~~~-----------------------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 140 (196)
T 1l3k_A 90 VSREDSQR-----------------------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 140 (196)
T ss_dssp CC----------------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred cCcccccc-----------------------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecC
Confidence 76522110 1112234799999999999999999999999999999999876
Q ss_pred CC----cEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeecCCC
Q 025499 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 204 (252)
Q Consensus 161 ~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~~~~ 204 (252)
.+ |||||+|.+.++|.+|+.. +|..+. |+.|.|..+...
T Consensus 141 ~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~----G~~i~v~~a~~k 183 (196)
T 1l3k_A 141 GSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVN----GHNCEVRKALSK 183 (196)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHC-SCCEET----TEECEEEECC--
T ss_pred CCCCccceEEEEECCHHHHHHHHHh-CCcEEC----CEEEEEEecCCh
Confidence 43 6999999999999999986 799999 999999998843
No 7
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=4.5e-34 Score=227.46 Aligned_cols=197 Identities=20% Similarity=0.284 Sum_probs=149.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH----HHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEE
Q 025499 3 GRFSRTIYVGNLPSDIREYEVE----DLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~----~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 78 (252)
..++++|||+|||+++|+++|+ ++|+.||.|.+|.+..++.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 4889999999999999999966 899999999999998888999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCCCCC---------------------CCCC-CCCC---CCCCCC-------------------------
Q 025499 79 LAHGGSGRGPSSSDRR---------------------GGYG-GGGA---GGAGGA------------------------- 108 (252)
Q Consensus 79 ~~~~~~~~~~~~~~~~---------------------~~~~-~~~~---~~~~~~------------------------- 108 (252)
++.............. .... .... +...+.
T Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (282)
T 3pgw_A 86 YAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMP 165 (282)
T ss_pred EeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCC
Confidence 9976532100000000 0000 0000 000000
Q ss_pred --------CCCCC-------------CC-----CCCCCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC
Q 025499 109 --------GAGAG-------------AG-----RFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 162 (252)
Q Consensus 109 --------~~~~~-------------~~-----~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~ 162 (252)
+.... .. .......+..+|||+|||..+++++|+++|+.||.|..+.+..+. .
T Consensus 166 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-~ 244 (282)
T 3pgw_A 166 PPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-H 244 (282)
T ss_pred CCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-C
Confidence 00000 00 000122356789999999999999999999999999999998665 3
Q ss_pred cEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeecCC
Q 025499 163 TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (252)
Q Consensus 163 ~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~~~ 203 (252)
|||||+|.+.++|..|+..|||..+.+ |+.|+|.++++
T Consensus 245 g~afV~f~~~~~A~~A~~~l~g~~~~~---g~~l~v~~akk 282 (282)
T 3pgw_A 245 DIAFVEFDNEVQAGAARDALQGFKITQ---NNAMKISFAKK 282 (282)
T ss_pred cEEEEEeCCHHHHHHHHHHcCCcEeCC---CCEEEEEEecC
Confidence 799999999999999999999999873 78999988763
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=7.3e-35 Score=216.01 Aligned_cols=163 Identities=17% Similarity=0.284 Sum_probs=141.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecC---C--CCCeEEEEEECCHHHHHHHHHhcCCcccC---CeeEE
Q 025499 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---P--RPPCYCFVEFENARDAEDAIRGRDGYNFD---GCRLR 76 (252)
Q Consensus 5 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~---~--~~~g~afV~f~~~~~a~~a~~~l~~~~~~---g~~i~ 76 (252)
++++|||+|||+++|+++|+++|++||+|.+|.+..+ + .++|||||+|.+.++|.+|+..|++..+. ++++.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 6789999999999999999999999999999999553 2 67899999999999999999999998775 68888
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEE
Q 025499 77 VELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEV 156 (252)
Q Consensus 77 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~ 156 (252)
+.++.... .......+|||+|||..+++++|+++|++||.|..+.+
T Consensus 82 ~~~~~~~~----------------------------------~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~ 127 (175)
T 3nmr_A 82 MKPADSEK----------------------------------NNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRI 127 (175)
T ss_dssp EEECGGGC----------------------------------CSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred Eccccccc----------------------------------cccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEE
Confidence 88876541 12234579999999999999999999999999999999
Q ss_pred eeCCCC---cEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeecC
Q 025499 157 SRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (252)
Q Consensus 157 ~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~~ 202 (252)
..+..+ |||||+|.+.++|.+|+..|||..+.. ..++.|.|..++
T Consensus 128 ~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~-g~~~~l~V~~ad 175 (175)
T 3nmr_A 128 LRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTME-GCSSPMVVKFAD 175 (175)
T ss_dssp EECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCT-TCSSCCEEEECC
T ss_pred EECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccC-CCCCCeEEEecC
Confidence 988653 699999999999999999999998862 124899988764
No 9
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=2.7e-34 Score=221.82 Aligned_cols=195 Identities=16% Similarity=0.187 Sum_probs=147.9
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 025499 3 GRFSRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (252)
Q Consensus 3 ~~~~~~l~v~~lp~-~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (252)
..++++|||+|||+ ++|+++|+++|+.||.|.+|.+..+. +|||||+|.+.++|.+|++.|+|..|.|++|.|.++.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~--~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 108 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 108 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT--SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC--CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 36789999999999 99999999999999999999997654 7999999999999999999999999999999999997
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHHhC-CceEEEEeeCC
Q 025499 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDS 160 (252)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g-~v~~~~~~~~~ 160 (252)
.........................................+..+|||+|||..+++++|+++|+.|| .|..+.+...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~- 187 (229)
T 2adc_A 109 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK- 187 (229)
T ss_dssp CCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-
T ss_pred CccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-
Confidence 65322111111000000000000000000011111112234568999999999999999999999999 9999998653
Q ss_pred CCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeecCC
Q 025499 161 EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (252)
Q Consensus 161 ~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~~~ 203 (252)
..++|||+|.+.++|.+|+..|||..+.+ |+.|.|.+++.
T Consensus 188 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~~---g~~l~v~~a~~ 227 (229)
T 2adc_A 188 DRKMALIQMGSVEEAVQALIDLHNHDLGE---NHHLRVSFSKS 227 (229)
T ss_dssp STTCEEEEESSHHHHHHHHHHHTTCBSSS---SCBCEEEECSS
T ss_pred CCcEEEEEECCHHHHHHHHHHHCCCccCC---CCeEEEEEecC
Confidence 24799999999999999999999999863 78899988763
No 10
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=1.5e-34 Score=221.44 Aligned_cols=173 Identities=18% Similarity=0.316 Sum_probs=145.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 025499 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (252)
Q Consensus 5 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (252)
++++|||+|||+++|+++|+++|+.||+|.+|.+.. ++.++|||||+|.+.++|.+|+..|++..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 468999999999999999999999999999999954 46789999999999999999999999999999999998876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCC
Q 025499 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (252)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~ 161 (252)
......... ...........+|||+|||..+++++|+++|++||.|..+.+..+..
T Consensus 107 ~~~~~~~~~------------------------~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~ 162 (216)
T 2qfj_A 107 NIGQAQPII------------------------DQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPT 162 (216)
T ss_dssp CCGGGHHHH------------------------HHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTT
T ss_pred Cccccchhh------------------------hhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCC
Confidence 441100000 00000112347999999999999999999999999999999998854
Q ss_pred C----cEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeecCCCC
Q 025499 162 G----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 205 (252)
Q Consensus 162 ~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~~~~~ 205 (252)
+ |||||+|.+.++|.+|+..|||..+. |+.|.|..+...+
T Consensus 163 ~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~----g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 163 TGKHKGYGFIEYEKAQSSQDAVSSMNLFDLG----GQYLRVGKAVTPP 206 (216)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCBCS----SSBCEEEECSSCS
T ss_pred CCCcCceEEEEecCHHHHHHHHHHccCCEeC----CcEEEEEEecCCC
Confidence 3 69999999999999999999999999 9999999988543
No 11
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=100.00 E-value=2.9e-34 Score=217.00 Aligned_cols=191 Identities=16% Similarity=0.186 Sum_probs=146.2
Q ss_pred CcEEEEcCCCC-CCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecCCCC
Q 025499 6 SRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (252)
Q Consensus 6 ~~~l~v~~lp~-~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 84 (252)
+++|||+|||+ ++|+++|+++|+.||.|.+|.+..+. +|||||+|.+.++|.+|+..|+|..+.|++|.|.++....
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~--~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC--SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence 68999999999 99999999999999999999997654 7899999999999999999999999999999999998653
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHHhC-CceEEEEeeCCCCc
Q 025499 85 GRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSEGT 163 (252)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g-~v~~~~~~~~~~~~ 163 (252)
......................................+..+|||+|||..+++++|+++|+.|| .|..+.+..+. .|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-~g 159 (198)
T 1qm9_A 81 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-RK 159 (198)
T ss_dssp CCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-SS
T ss_pred cCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-Cc
Confidence 22211111000000000000000001111111122234578999999999999999999999999 99999986643 47
Q ss_pred EEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeecC
Q 025499 164 YGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (252)
Q Consensus 164 ~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~~ 202 (252)
+|||+|.+.++|..|+..|||..+.+ |+.|.|..++
T Consensus 160 ~afV~f~~~~~A~~A~~~l~g~~~~~---g~~l~v~~a~ 195 (198)
T 1qm9_A 160 MALIQMGSVEEAVQALIDLHNHDLGE---NHHLRVSFSK 195 (198)
T ss_dssp CEEEECSSHHHHHHHHHHHTSSCCSS---CCSCCEEEEC
T ss_pred EEEEEeCCHHHHHHHHHHhcCCccCC---CCeEEEEeec
Confidence 99999999999999999999999863 7888888765
No 12
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=2e-33 Score=212.38 Aligned_cols=178 Identities=21% Similarity=0.353 Sum_probs=142.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhc----C-------ceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKY----G-------RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~----G-------~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g 72 (252)
..+++|||+|||+++|+++|+++|+.| | .|.++.+. .++|||||+|.+.++|.+|+ .|+|..|.|
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~---~~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE---TTTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec---CCCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 478999999999999999999999999 4 56666553 45899999999999999999 699999999
Q ss_pred eeEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCce
Q 025499 73 CRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVC 152 (252)
Q Consensus 73 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~ 152 (252)
++|.|.++............... ...............+|||+|||..+++++|+++|++||.|.
T Consensus 78 ~~i~v~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~ 142 (198)
T 2yh0_A 78 QSLKIRRPHDYQPLPGMSENPSV---------------YVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLK 142 (198)
T ss_dssp EEEEEECCCCCCCCCCSSSCSSC---------------CCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEE
T ss_pred ceEEEeCCCCCCCCCCCcCCCcC---------------CCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCcc
Confidence 99999998765322111000000 000011122234568999999999999999999999999999
Q ss_pred EEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeecCCC
Q 025499 153 FAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 204 (252)
Q Consensus 153 ~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~~~~ 204 (252)
.+.+..+..+ |||||+|.+.++|..|+..|||..+. |+.|.|..+...
T Consensus 143 ~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a~~~ 194 (198)
T 2yh0_A 143 AFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG----DKKLLVQRASVG 194 (198)
T ss_dssp EEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEET----TEECEEEESCCC
T ss_pred EEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC----CEEEEEEECCCC
Confidence 9999988633 69999999999999999999999999 999999998743
No 13
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=7.2e-34 Score=210.13 Aligned_cols=155 Identities=23% Similarity=0.420 Sum_probs=138.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhc----C-------ceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKY----G-------RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~----G-------~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g 72 (252)
+++++|||+|||+++|+++|+++|++| | .|.++.+.. ++|||||+|.+.++|.+|+ .|+|..+.|
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~---~~g~afV~f~~~~~A~~A~-~~~~~~~~g 77 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ---DKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET---TTTEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC---CCCEEEEEeCCHHHHHHHH-HhCCcEecC
Confidence 478999999999999999999999999 6 677776653 4899999999999999999 699999999
Q ss_pred eeEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCce
Q 025499 73 CRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVC 152 (252)
Q Consensus 73 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~ 152 (252)
++|.|.++..... .....+|||+|||..+++++|+++|++||.|.
T Consensus 78 ~~i~v~~~~~~~~-----------------------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~ 122 (172)
T 2g4b_A 78 QSLKIRRPHDYQP-----------------------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLK 122 (172)
T ss_dssp EECEEECCSSCCC-----------------------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEE
T ss_pred ceeeecCCcccCC-----------------------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCce
Confidence 9999998764411 11247999999999999999999999999999
Q ss_pred EEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeec
Q 025499 153 FAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (252)
Q Consensus 153 ~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (252)
.+.+..++.+ |+|||+|.+.++|.+|+..|||..+. |+.|.|..+
T Consensus 123 ~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~V~~A 171 (172)
T 2g4b_A 123 AFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG----DKKLLVQRA 171 (172)
T ss_dssp EEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEET----TEECEEEEC
T ss_pred EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEEC----CeEEEEEeC
Confidence 9999988643 69999999999999999999999999 999999875
No 14
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=1.9e-34 Score=212.23 Aligned_cols=158 Identities=18% Similarity=0.365 Sum_probs=140.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
+++++|||+|||+++|+++|+++|+.||+|.+|.+.. ++.++|||||+|.+.++|.+|+.. +..++|+.|.|.++
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 4789999999999999999999999999999999954 478899999999999999999994 57899999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCC
Q 025499 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (252)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~ 160 (252)
.+.. ......+|||+|||..+++++|.++|+.||.|..+.+..+.
T Consensus 79 ~~~~-----------------------------------~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~ 123 (167)
T 2cjk_A 79 IPRD-----------------------------------EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDK 123 (167)
T ss_dssp CCHH-----------------------------------HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSS
T ss_pred cchh-----------------------------------hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcC
Confidence 6431 11234699999999999999999999999999999998875
Q ss_pred CC----cEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeecCC
Q 025499 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (252)
Q Consensus 161 ~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~~~ 203 (252)
.+ |||||+|.+.++|.+|++ ++|..+. |+.|.|..+..
T Consensus 124 ~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~----g~~i~V~~a~p 165 (167)
T 2cjk_A 124 DTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFK----DRKIEIKRAEP 165 (167)
T ss_dssp SSSTTSEEEEEEESSHHHHHHHHH-CSEECSS----SSCEEEEECCC
T ss_pred CCCccceEEEEEECCHHHHHHHHh-CCCEEeC----CeEEEEeecCC
Confidence 43 699999999999999998 8999999 99999998863
No 15
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=1.5e-34 Score=214.46 Aligned_cols=162 Identities=14% Similarity=0.225 Sum_probs=140.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEE--ecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL--KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~--~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
..++++|||+|||+++|+++|+++|..||.|..+.+ ..++.++|||||+|.+.++|.+|++ |+|..+.|++|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecC
Confidence 368899999999999999999999999997766333 3457789999999999999999996 9999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCC
Q 025499 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (252)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~ 160 (252)
.+... .......+|||+|||..+++++|+++|+.||.|..+ .....
T Consensus 89 ~~~~~---------------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~ 134 (175)
T 1fje_B 89 KGRDS---------------------------------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGK 134 (175)
T ss_dssp CCSSC---------------------------------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSS
T ss_pred CCccc---------------------------------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCC
Confidence 76421 112345799999999999999999999999998887 22233
Q ss_pred CCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeecCC
Q 025499 161 EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (252)
Q Consensus 161 ~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~~~ 203 (252)
..|||||+|.+.++|.+|+..|||..+. |+.|.|..+..
T Consensus 135 ~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~i~v~~a~~ 173 (175)
T 1fje_B 135 SKGIAYIEFKSEADAEKNLEEKQGAEID----GRSVSLYYTGE 173 (175)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHTEEEET----TEEEEEEECSS
T ss_pred CceEEEEEECCHHHHHHHHHHhCCCEEC----CeEEEEEecCC
Confidence 4489999999999999999999999999 99999998863
No 16
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=100.00 E-value=1e-32 Score=216.95 Aligned_cols=156 Identities=25% Similarity=0.348 Sum_probs=141.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (252)
.++++|||+|||+++|+++|+++|+.||.|..|.+..+ +|||||+|.+.++|.+|+..|+|..|.|+.|.|.++.+.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 96 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD---RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHG 96 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccC
Confidence 45689999999999999999999999999999999643 899999999999999999999999999999999998643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC-
Q 025499 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG- 162 (252)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~- 162 (252)
.+|||+|||..+++++|.++|+.||.|..+.+..+..+
T Consensus 97 -----------------------------------------~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~ 135 (261)
T 3sde_A 97 -----------------------------------------AALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGR 135 (261)
T ss_dssp -----------------------------------------SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSC
T ss_pred -----------------------------------------CcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCC
Confidence 69999999999999999999999999999999888543
Q ss_pred --cEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeecCC
Q 025499 163 --TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (252)
Q Consensus 163 --~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~~~ 203 (252)
|||||+|.+.++|..|+..||+..+.....++.|.|..+..
T Consensus 136 ~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 136 ATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCC
T ss_pred cCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccc
Confidence 69999999999999999999766555455588999988773
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=2.1e-32 Score=218.00 Aligned_cols=166 Identities=18% Similarity=0.239 Sum_probs=147.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
.+.++|||+|||+++|+++|.++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|+|..++|++|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 4678999999999999999999999999999999854 4678899999999999999999989999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCC-CHHHHHHHHHHhCCceEEEEeeC
Q 025499 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSA-SWQDLKDHMRKAGDVCFAEVSRD 159 (252)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~-t~~~l~~~f~~~g~v~~~~~~~~ 159 (252)
.+... ........+|||+|||..+ ++++|.++|+.||.|..+.+..+
T Consensus 173 ~~~~~--------------------------------~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~ 220 (284)
T 3smz_A 173 DAGQL--------------------------------TPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACG 220 (284)
T ss_dssp CGGGC--------------------------------CTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEEC
T ss_pred CCCCC--------------------------------CcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEEC
Confidence 76521 1112345799999999995 99999999999999999999887
Q ss_pred CCC---cEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeecCCCC
Q 025499 160 SEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 205 (252)
Q Consensus 160 ~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~~~~~ 205 (252)
..+ |+|||+|.+.++|..|+..|||..+. |+.|.|..+....
T Consensus 221 ~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~v~~a~~~~ 265 (284)
T 3smz_A 221 QDGQLKGFAVLEYETAEMAEEAQQQADGLSLG----GSHLRVSFCAPGP 265 (284)
T ss_dssp SSCCEEEEEEEECSSHHHHHHHHHHHTTCEET----TEECEEEECCSSS
T ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCCccC----CeEEEEEEecCCC
Confidence 543 69999999999999999999999998 9999999987443
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=6.6e-32 Score=215.18 Aligned_cols=151 Identities=23% Similarity=0.280 Sum_probs=139.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (252)
.++++|||+|||+++|+++|.++|+.|| |..+.+ +.++|||||+|.+.++|.+|+..|+|..+.|++|.|.++...
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 95 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV---DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTD 95 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE---ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE---ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCC
Confidence 4679999999999999999999999999 999988 456899999999999999999999999999999999986432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC-
Q 025499 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG- 162 (252)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~- 162 (252)
.+|||+|||..+++++|.++|+.||.|..+.+..+..+
T Consensus 96 -----------------------------------------~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g 134 (284)
T 3smz_A 96 -----------------------------------------ALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTG 134 (284)
T ss_dssp -----------------------------------------CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC
T ss_pred -----------------------------------------CEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCC
Confidence 69999999999999999999999999999999887643
Q ss_pred ---cEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeecCC
Q 025499 163 ---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (252)
Q Consensus 163 ---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~~~ 203 (252)
|||||+|.+.++|..|+..|+|..+. |+.|.|..+..
T Consensus 135 ~~~g~afV~f~~~~~a~~A~~~l~~~~~~----g~~i~v~~a~~ 174 (284)
T 3smz_A 135 QSKGYGFAEYMKKDSAARAKSDLLGKPLG----PRTLYVHWTDA 174 (284)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEEEECCG
T ss_pred ccceEEEEEECCHHHHHHHHHHhCCCEeC----CcEEEEEECCC
Confidence 69999999999999999999999999 99999998874
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=3.4e-32 Score=217.64 Aligned_cols=167 Identities=13% Similarity=0.263 Sum_probs=142.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcC-ceeEEEEecC--CCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 025499 5 FSRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (252)
Q Consensus 5 ~~~~l~v~~lp~~~t~~~l~~~f~~~G-~v~~v~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (252)
+.++|||+|||+.+|+++|.++|+.|| .|..|.+..+ +.++|||||+|.+.++|.+|+..|+|..+.|++|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 9999999553 5679999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCC-CCHHHHHHHHHHhCCceEEEEeeCC
Q 025499 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSS-ASWQDLKDHMRKAGDVCFAEVSRDS 160 (252)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~-~t~~~l~~~f~~~g~v~~~~~~~~~ 160 (252)
+....... ........+|||+|||.. +++++|.++|+.||.|..+.+..+.
T Consensus 196 ~~~~~~~~----------------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~ 247 (292)
T 2ghp_A 196 PLEKSKRT----------------------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQ 247 (292)
T ss_dssp CC-------------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCC
T ss_pred CCcccccc----------------------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecC
Confidence 65221110 112334579999999999 9999999999999999999998865
Q ss_pred C-----CcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeecCCC
Q 025499 161 E-----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 204 (252)
Q Consensus 161 ~-----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~~~~ 204 (252)
. .|||||+|.+.++|..|+ .|||..+. |+.|.|..+...
T Consensus 248 ~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~----g~~i~V~~a~~k 291 (292)
T 2ghp_A 248 KEHSFNNCCAFMVFENKDSAERAL-QMNRSLLG----NREISVSLADKK 291 (292)
T ss_dssp C---CCCEEEEEEESSHHHHHHHG-GGTTEEET----TEEEEEEECCCC
T ss_pred CcCCCCceEEEEEeCCHHHHHHHH-HhcCCEEC----CcEEEEEEecCC
Confidence 4 379999999999999999 99999999 999999998753
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=1.5e-31 Score=213.98 Aligned_cols=153 Identities=18% Similarity=0.255 Sum_probs=136.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecC-CCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecCC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (252)
.++++|||+|||+++|+++|+++|+.||+|.+|.+..+ ..++|||||+|.+.++|.+|+. |++..+.|++|.|.++..
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~~~ 117 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHLTE 117 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEECCC
Confidence 57899999999999999999999999999999999664 3458999999999999999996 999999999999998643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHHhC-CceEEEEeeCC-
Q 025499 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDS- 160 (252)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g-~v~~~~~~~~~- 160 (252)
.+|||+|||..+++++|.++|+.|| .|..+.+..+.
T Consensus 118 ------------------------------------------~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~ 155 (292)
T 2ghp_A 118 ------------------------------------------CTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF 155 (292)
T ss_dssp ------------------------------------------CEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC----
T ss_pred ------------------------------------------CEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC
Confidence 5999999999999999999999999 99999998765
Q ss_pred --CCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeecCC
Q 025499 161 --EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (252)
Q Consensus 161 --~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~~~ 203 (252)
..|||||+|.+.++|..|+..|+|..+. |+.|.|..+..
T Consensus 156 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a~~ 196 (292)
T 2ghp_A 156 NTSRRFAYIDVTSKEDARYCVEKLNGLKIE----GYTLVTKVSNP 196 (292)
T ss_dssp ---CCEEEEECSSHHHHHHHHHHHTTCEET----TEECEEEECCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEeC----CcEEEEEECCC
Confidence 3479999999999999999999999999 99999998773
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.93 E-value=5e-26 Score=156.37 Aligned_cols=109 Identities=22% Similarity=0.297 Sum_probs=73.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecC-CCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 025499 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (252)
Q Consensus 5 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (252)
.+++|||+|||+++|+++|+++|++||.|.+|.|..+ +.++|||||+|.+.++|++|+..|+|..|+|++|.|.++.+.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 3678999999999999999999999999999999653 456899999999999999999999999999999999998765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHH
Q 025499 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQD 140 (252)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~ 140 (252)
..+.... ........+|||+|||+++|++.
T Consensus 84 ~~~~~~~---------------------------~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAEL---------------------------GARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC-------------------------------------------------------
T ss_pred ccccccc---------------------------ccccCCCCceEeCCCCCCccccc
Confidence 3322111 11122335799999999998864
No 22
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.90 E-value=6e-23 Score=149.23 Aligned_cols=143 Identities=15% Similarity=0.074 Sum_probs=104.2
Q ss_pred EEEecC-CCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025499 36 IELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGA 114 (252)
Q Consensus 36 v~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (252)
+.+..+ ..++|||||+|.+.++|++|+..+++....+..+.+............. ..
T Consensus 3 ~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~ 60 (158)
T 2kn4_A 3 YKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGS----------------------HH 60 (158)
T ss_dssp EEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCC----------------------CC
T ss_pred EEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccc----------------------cc
Confidence 444333 3678999999999999999998877633322233222111110000000 00
Q ss_pred CCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCC----CcEEEEEcCChhHHHHHHHHhcCccccCC
Q 025499 115 GRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNP 190 (252)
Q Consensus 115 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~ 190 (252)
...........+|||+|||..+++++|+++|+.||.|..+.+..+.. .|||||+|.+.++|..|+..|||..+.
T Consensus 61 ~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~-- 138 (158)
T 2kn4_A 61 HHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD-- 138 (158)
T ss_dssp SSCCCCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESS--
T ss_pred cccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC--
Confidence 01112223457999999999999999999999999999999988753 369999999999999999999999999
Q ss_pred CCCceeEeeecCCC
Q 025499 191 WARGRITVKRYDRS 204 (252)
Q Consensus 191 ~~g~~i~v~~~~~~ 204 (252)
|+.|.|..+...
T Consensus 139 --g~~l~v~~a~~~ 150 (158)
T 2kn4_A 139 --GRELRVQMARYG 150 (158)
T ss_dssp --SSEEEEEEECCS
T ss_pred --CeEEEEEECCCC
Confidence 999999999843
No 23
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.90 E-value=1.7e-23 Score=139.53 Aligned_cols=78 Identities=26% Similarity=0.408 Sum_probs=73.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 025499 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (252)
Q Consensus 5 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (252)
.+++|||+|||+++|+++|+++|++||+|.+|.+.. ++.++|||||+|.+.++|.+|+..|||..|+|++|.|.+++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 467899999999999999999999999999999954 46789999999999999999999999999999999999987
Q ss_pred C
Q 025499 82 G 82 (252)
Q Consensus 82 ~ 82 (252)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 24
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.89 E-value=2e-23 Score=143.62 Aligned_cols=106 Identities=26% Similarity=0.363 Sum_probs=95.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 025499 2 SGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (252)
Q Consensus 2 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (252)
...++++|||+|||+.+|+++|+++|+.||.|..|.+..++.++|||||+|.+.++|.+|+..|+|..++|+.|.|.++.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 34688999999999999999999999999999999998888889999999999999999999999999999999999997
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHHHhCC
Q 025499 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD 150 (252)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~ 150 (252)
+.... .+++...++++|.++|++||.
T Consensus 84 ~~~~~-------------------------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 84 ANRAF-------------------------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHHT-------------------------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred CChhh-------------------------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 65110 356677889999999999984
No 25
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.89 E-value=2.2e-22 Score=144.86 Aligned_cols=138 Identities=18% Similarity=0.164 Sum_probs=111.6
Q ss_pred CCCCeEEEEEECCHHHHHHHHHhc-CCcccCCeeEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025499 42 PRPPCYCFVEFENARDAEDAIRGR-DGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGIS 120 (252)
Q Consensus 42 ~~~~g~afV~f~~~~~a~~a~~~l-~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (252)
...+|+++|+|.+.++|++|+..| +|..++| .|.+.++............ .........
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~-------------------~~~~~~~~~ 69 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHH-------------------HHHHMHRDS 69 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSS-------------------CCCCSCSSS
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccccc-------------------ccccccccC
Confidence 456899999999999999999999 9999999 9999987643111000000 000111233
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeee
Q 025499 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (252)
Q Consensus 121 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~ 200 (252)
....++|||+|||..+++++|+++|+.||.|..+.+..+ ..|||||+|.+.++|..|+..|||..+. |+.|.|..
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLC----GCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSS----SSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEE
Confidence 345689999999999999999999999999999999887 3589999999999999999999999998 99999998
Q ss_pred cCCC
Q 025499 201 YDRS 204 (252)
Q Consensus 201 ~~~~ 204 (252)
+...
T Consensus 145 a~~~ 148 (150)
T 2i2y_A 145 SNGE 148 (150)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8743
No 26
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.5e-22 Score=134.69 Aligned_cols=81 Identities=21% Similarity=0.277 Sum_probs=74.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCC--cccCCeeEEEEe
Q 025499 2 SGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG--YNFDGCRLRVEL 79 (252)
Q Consensus 2 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~--~~~~g~~i~v~~ 79 (252)
+..+.++|||+|||+++|+++|+++|++||+|.+|.+..+ +|||||+|.+.++|.+|+..|++ ..|.|++|.|.+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~---kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 4578999999999999999999999999999999999865 89999999999999999998864 789999999999
Q ss_pred cCCCCC
Q 025499 80 AHGGSG 85 (252)
Q Consensus 80 ~~~~~~ 85 (252)
+.++..
T Consensus 89 A~~~~~ 94 (105)
T 1sjq_A 89 SNHKEL 94 (105)
T ss_dssp CSSSSC
T ss_pred cCCCCC
Confidence 987643
No 27
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.88 E-value=6.1e-23 Score=134.77 Aligned_cols=79 Identities=18% Similarity=0.313 Sum_probs=71.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcC-ceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcC-CcccCCeeEEEEec
Q 025499 6 SRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRD-GYNFDGCRLRVELA 80 (252)
Q Consensus 6 ~~~l~v~~lp~~~t~~~l~~~f~~~G-~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~-~~~~~g~~i~v~~~ 80 (252)
+++|||+|||+++|+++|+++|++|| +|.+|.+.. ++.++|||||+|.+.++|.+|++.|+ +..++|++|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 899999854 47889999999999999999998774 56799999999999
Q ss_pred CCCC
Q 025499 81 HGGS 84 (252)
Q Consensus 81 ~~~~ 84 (252)
.+++
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8764
No 28
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=6.3e-22 Score=134.68 Aligned_cols=82 Identities=59% Similarity=1.025 Sum_probs=77.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 025499 2 SGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (252)
Q Consensus 2 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (252)
...+.++|||+|||+++|+++|+++|++||.|..|.+..++.+++||||+|.+.++|++|+..|++..|+|+.|.|.++.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 34678999999999999999999999999999999998888889999999999999999999999999999999999998
Q ss_pred CC
Q 025499 82 GG 83 (252)
Q Consensus 82 ~~ 83 (252)
+.
T Consensus 98 ~~ 99 (109)
T 1x4a_A 98 SG 99 (109)
T ss_dssp CC
T ss_pred cC
Confidence 76
No 29
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.88 E-value=3.3e-21 Score=160.86 Aligned_cols=81 Identities=30% Similarity=0.533 Sum_probs=75.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
.+.++|||+|||+.+|+++|.++|++||.|+.|.|+. ++.++|||||+|.+.++|.+||..|||..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 5678999999999999999999999999999999964 5778999999999999999999999999999999999999
Q ss_pred CCCC
Q 025499 81 HGGS 84 (252)
Q Consensus 81 ~~~~ 84 (252)
.+..
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 8763
No 30
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.88 E-value=4.2e-22 Score=131.15 Aligned_cols=78 Identities=17% Similarity=0.180 Sum_probs=72.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcc--cCCeeEEEEec
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYN--FDGCRLRVELA 80 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~--~~g~~i~v~~~ 80 (252)
..|+++|||+|||+++|+++|+++|++||.|.+|.+.. .+|||||+|.+.++|.+|+..|++.. +.|++|.|+++
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~---~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP---KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc---CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 36899999999999999999999999999999999975 38999999999999999999998865 78999999999
Q ss_pred CCC
Q 025499 81 HGG 83 (252)
Q Consensus 81 ~~~ 83 (252)
+.+
T Consensus 95 ~~k 97 (100)
T 3r27_A 95 TSQ 97 (100)
T ss_dssp SCS
T ss_pred ccc
Confidence 865
No 31
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.87 E-value=2.7e-22 Score=134.63 Aligned_cols=76 Identities=45% Similarity=0.718 Sum_probs=72.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecCCCC
Q 025499 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (252)
Q Consensus 7 ~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 84 (252)
++|||+|||+++|+++|+++|++||+|..|.+..+ ++|||||+|.+.++|.+|+..|++..+.|+.|.|.++.+..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 58999999999999999999999999999999766 78999999999999999999999999999999999998763
No 32
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.87 E-value=1.3e-21 Score=134.30 Aligned_cols=84 Identities=25% Similarity=0.451 Sum_probs=77.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec--CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEE
Q 025499 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (252)
Q Consensus 1 m~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 78 (252)
|..++.++|||+|||+++|+++|+++|++||.|.+|.+.. ++.++|||||+|.+.++|++|+..|+|..|.|+.|.|.
T Consensus 2 ~e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp CTTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3458899999999999999999999999999999999965 57789999999999999999999999999999999999
Q ss_pred ecCCCC
Q 025499 79 LAHGGS 84 (252)
Q Consensus 79 ~~~~~~ 84 (252)
++.+..
T Consensus 82 ~a~~~~ 87 (116)
T 2fy1_A 82 QAKKPS 87 (116)
T ss_dssp ECCCSS
T ss_pred ECCCCC
Confidence 998663
No 33
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.87 E-value=9.6e-23 Score=139.87 Aligned_cols=75 Identities=63% Similarity=1.020 Sum_probs=65.7
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCce-----
Q 025499 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR----- 195 (252)
Q Consensus 121 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~----- 195 (252)
....++|||+|||+.+++++|+++|++||.|..+.++.+ +||||+|.+.++|..||+.|||..|. |+.
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~----gr~~~~~~ 85 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFR----SHEGETAY 85 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCC----CTTSCCCB
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEEC----CcEeeeEE
Confidence 356789999999999999999999999999999999877 79999999999999999999999999 776
Q ss_pred eEeeecC
Q 025499 196 ITVKRYD 202 (252)
Q Consensus 196 i~v~~~~ 202 (252)
|+|..+.
T Consensus 86 i~v~~~~ 92 (115)
T 3beg_B 86 IRVKVDG 92 (115)
T ss_dssp CEEEECC
T ss_pred EEeccCC
Confidence 6666555
No 34
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.87 E-value=5.1e-22 Score=134.80 Aligned_cols=80 Identities=19% Similarity=0.302 Sum_probs=75.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
.|.++|||+|||+++|+++|+++|++||+|.+|.|.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 6889999999999999999999999999999999965 4678999999999999999999999999999999999998
Q ss_pred CCC
Q 025499 81 HGG 83 (252)
Q Consensus 81 ~~~ 83 (252)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 654
No 35
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=2e-21 Score=129.92 Aligned_cols=83 Identities=28% Similarity=0.375 Sum_probs=76.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEe
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (252)
..++++|||+|||+++|+++|+++|++||+|..|.+.. ++.++|||||+|.+.++|.+|+..|++..|.|++|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 37889999999999999999999999999999999954 467899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 025499 80 AHGGSG 85 (252)
Q Consensus 80 ~~~~~~ 85 (252)
+.+...
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987643
No 36
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=136.08 Aligned_cols=81 Identities=19% Similarity=0.358 Sum_probs=75.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH----HHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEE
Q 025499 3 GRFSRTIYVGNLPSDIREYEVE----DLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~----~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 78 (252)
..|+++|||+|||+.+++++|+ ++|++||+|.+|.+..++.++|||||+|.+.++|..|+..|||..|.|++|.|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 4678999999999999999876 799999999999998788899999999999999999999999999999999999
Q ss_pred ecCCC
Q 025499 79 LAHGG 83 (252)
Q Consensus 79 ~~~~~ 83 (252)
|+...
T Consensus 106 ~a~~~ 110 (127)
T 2a3j_A 106 FSETP 110 (127)
T ss_dssp ECCCC
T ss_pred EccCc
Confidence 99865
No 37
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=9.6e-22 Score=134.05 Aligned_cols=81 Identities=20% Similarity=0.272 Sum_probs=73.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCC--cccCCeeEEEEe
Q 025499 2 SGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG--YNFDGCRLRVEL 79 (252)
Q Consensus 2 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~--~~~~g~~i~v~~ 79 (252)
...|+++|||+|||+++|+++|+++|++||.|.+|.+..+ +|||||+|.+.++|.+|+..|++ ..|.|++|.|.+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~---kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG---GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 3478999999999999999999999999999999999765 89999999999999999998874 689999999999
Q ss_pred cCCCCC
Q 025499 80 AHGGSG 85 (252)
Q Consensus 80 ~~~~~~ 85 (252)
+.....
T Consensus 104 a~~k~~ 109 (119)
T 2ad9_A 104 SNHKEL 109 (119)
T ss_dssp CSSSSC
T ss_pred ccCCCC
Confidence 987643
No 38
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=3.4e-21 Score=129.70 Aligned_cols=82 Identities=33% Similarity=0.490 Sum_probs=75.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecC-CCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (252)
..+.++|||+|||+.+|+++|+++|++||+|..|.+..+ ..++|||||+|.+.++|.+|+..|++..|.|++|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 467899999999999999999999999999999999664 4468999999999999999999999999999999999998
Q ss_pred CCC
Q 025499 82 GGS 84 (252)
Q Consensus 82 ~~~ 84 (252)
+..
T Consensus 92 ~~~ 94 (103)
T 2cqi_A 92 TPS 94 (103)
T ss_dssp CTT
T ss_pred CCc
Confidence 763
No 39
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=3.2e-21 Score=127.87 Aligned_cols=81 Identities=27% Similarity=0.434 Sum_probs=76.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecC---CCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEe
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (252)
..++++|||+|||+++|+++|+++|++||+|..|.+..+ +.++|||||+|.+.++|.+|+..|++..|.|++|.|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 368899999999999999999999999999999999653 67899999999999999999999999999999999999
Q ss_pred cCCC
Q 025499 80 AHGG 83 (252)
Q Consensus 80 ~~~~ 83 (252)
+.+.
T Consensus 82 a~~~ 85 (95)
T 2dnz_A 82 VTER 85 (95)
T ss_dssp SSCC
T ss_pred cccc
Confidence 9876
No 40
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.87 E-value=4.1e-21 Score=129.25 Aligned_cols=79 Identities=19% Similarity=0.411 Sum_probs=73.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (252)
.++++|||+|||+++|+++|+++|++||.|..|.+. ++||||+|.+.++|.+|+..|++..|.|++|.|.++.+.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 578999999999999999999999999999999987 679999999999999999999999999999999999877
Q ss_pred CCCC
Q 025499 84 SGRG 87 (252)
Q Consensus 84 ~~~~ 87 (252)
....
T Consensus 84 ~~~~ 87 (103)
T 2dgu_A 84 DQKR 87 (103)
T ss_dssp CCCC
T ss_pred cccc
Confidence 4433
No 41
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=5.2e-22 Score=132.07 Aligned_cols=78 Identities=18% Similarity=0.164 Sum_probs=71.8
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCc--ccCCeeEEEEe
Q 025499 3 GRFSRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY--NFDGCRLRVEL 79 (252)
Q Consensus 3 ~~~~~~l~v~~lp~-~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~--~~~g~~i~v~~ 79 (252)
.+|+++|||+|||+ ++|+++|+++|++||.|.+|.|+.+ ++||||+|.+.++|.+|+..|++. .|.|++|.|.+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK---INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS---SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 36899999999999 9999999999999999999999754 689999999999999999988864 59999999999
Q ss_pred cCCC
Q 025499 80 AHGG 83 (252)
Q Consensus 80 ~~~~ 83 (252)
+...
T Consensus 89 a~~~ 92 (102)
T 1x4d_A 89 SQKY 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 9865
No 42
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=1.4e-21 Score=130.35 Aligned_cols=81 Identities=22% Similarity=0.355 Sum_probs=75.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec------CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEE
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI------PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~------~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~ 76 (252)
+.++++|||+|||+++|+++|+++|++||+|..|.+.. ++.++|||||+|.+.++|.+|+..|++..|+|++|.
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 46889999999999999999999999999999999964 236789999999999999999999999999999999
Q ss_pred EEecCCC
Q 025499 77 VELAHGG 83 (252)
Q Consensus 77 v~~~~~~ 83 (252)
|.++.+.
T Consensus 82 V~~a~~~ 88 (98)
T 2cpf_A 82 VRISERA 88 (98)
T ss_dssp EECSSCS
T ss_pred EEEccCC
Confidence 9999876
No 43
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.86 E-value=1.1e-21 Score=124.42 Aligned_cols=75 Identities=12% Similarity=0.141 Sum_probs=70.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (252)
-.+..|||+||++.+|+++|+++|.+||+|.++.+.. ++|||||+|.++++|.+|+..||+..+.|++|.|.++.
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 4578899999999999999999999999999999965 59999999999999999999999999999999999884
No 44
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.86 E-value=5.6e-21 Score=131.29 Aligned_cols=82 Identities=28% Similarity=0.434 Sum_probs=76.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
.+.++|||+|||+.+|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|++|+..|++..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 6789999999999999999999999999999999964 4677899999999999999999999999999999999999
Q ss_pred CCCCC
Q 025499 81 HGGSG 85 (252)
Q Consensus 81 ~~~~~ 85 (252)
.+...
T Consensus 93 ~~~~~ 97 (115)
T 2dgo_A 93 TRKPP 97 (115)
T ss_dssp SCCCC
T ss_pred cCCCC
Confidence 87743
No 45
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.86 E-value=1.9e-21 Score=129.18 Aligned_cols=79 Identities=25% Similarity=0.535 Sum_probs=74.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecC---CCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 025499 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (252)
Q Consensus 5 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (252)
|+++|||+|||..+|+++|+++|++||.|.+|.+..+ +.++|||||+|.+.++|.+|+..|+|..++|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 6899999999999999999999999999999999653 6789999999999999999999999999999999999998
Q ss_pred CC
Q 025499 82 GG 83 (252)
Q Consensus 82 ~~ 83 (252)
+.
T Consensus 81 ~~ 82 (96)
T 2x1f_A 81 NS 82 (96)
T ss_dssp CS
T ss_pred CC
Confidence 76
No 46
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=6.3e-21 Score=129.41 Aligned_cols=82 Identities=59% Similarity=0.912 Sum_probs=72.7
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccC-CCCCceeE
Q 025499 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN-PWARGRIT 197 (252)
Q Consensus 119 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~-~~~g~~i~ 197 (252)
++....++|||+|||..+++++|+++|++||.|+.+.+..+ +||||+|.+.++|+.||+.|||..+.+ ...++.|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 10 PSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp CCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 34456789999999999999999999999999999999887 799999999999999999999999991 22229999
Q ss_pred eeecCC
Q 025499 198 VKRYDR 203 (252)
Q Consensus 198 v~~~~~ 203 (252)
|..+..
T Consensus 87 V~~a~~ 92 (108)
T 1x4c_A 87 VKVDGP 92 (108)
T ss_dssp EEESSC
T ss_pred EEeCCC
Confidence 999884
No 47
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.86 E-value=1.4e-21 Score=127.54 Aligned_cols=80 Identities=29% Similarity=0.434 Sum_probs=72.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
.++++|||+|||+++|+++|+++|++||.|.+|.+.. ++.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 5788999999999999999999999999999999954 4677899999999999999999999999999999999999
Q ss_pred CCC
Q 025499 81 HGG 83 (252)
Q Consensus 81 ~~~ 83 (252)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 48
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.5e-21 Score=128.19 Aligned_cols=79 Identities=18% Similarity=0.244 Sum_probs=72.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhc--CCcccCCeeEEEEec
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR--DGYNFDGCRLRVELA 80 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l--~~~~~~g~~i~v~~~ 80 (252)
..|+++|||+|||+++|+++|+++|++||.|.+|.+..+ +|||||+|.+.++|.+|+..| ++..+.|++|.|.++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 478899999999999999999999999999999988764 899999999999999999977 467899999999999
Q ss_pred CCCC
Q 025499 81 HGGS 84 (252)
Q Consensus 81 ~~~~ 84 (252)
....
T Consensus 89 ~~~~ 92 (101)
T 2cq1_A 89 NHKE 92 (101)
T ss_dssp SCSS
T ss_pred Cccc
Confidence 8763
No 49
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.4e-21 Score=128.80 Aligned_cols=82 Identities=24% Similarity=0.372 Sum_probs=76.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEE-EEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEE
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDI-ELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v-~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 78 (252)
..++++|||+|||+++|+++|+++|++||.|..| .+.. ++.++|||||+|.+.++|.+|+..|++..|.|++|.|.
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3678999999999999999999999999999999 8854 46789999999999999999999999999999999999
Q ss_pred ecCCCC
Q 025499 79 LAHGGS 84 (252)
Q Consensus 79 ~~~~~~ 84 (252)
++.+..
T Consensus 82 ~a~~~~ 87 (96)
T 1x5t_A 82 YAFKKD 87 (96)
T ss_dssp ESCCCC
T ss_pred EecccC
Confidence 998763
No 50
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=2.6e-21 Score=130.30 Aligned_cols=83 Identities=23% Similarity=0.312 Sum_probs=76.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec-CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI-PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~-~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (252)
..+.++|||+|||+++|+++|+++|++||.|..|.+.. ++.+++||||+|.+.++|.+|+..|++..|.|++|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 46889999999999999999999999999999999965 46778999999999999999999999999999999999998
Q ss_pred CCCC
Q 025499 82 GGSG 85 (252)
Q Consensus 82 ~~~~ 85 (252)
+...
T Consensus 92 ~~~~ 95 (103)
T 2d9p_A 92 RKEE 95 (103)
T ss_dssp SCCC
T ss_pred cccc
Confidence 7643
No 51
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.86 E-value=6.4e-22 Score=131.81 Aligned_cols=83 Identities=29% Similarity=0.500 Sum_probs=76.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHH----HHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEE
Q 025499 1 MSGRFSRTIYVGNLPSDIREYEVE----DLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (252)
Q Consensus 1 m~~~~~~~l~v~~lp~~~t~~~l~----~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~ 76 (252)
|+..++++|||+|||+++|+++|+ ++|++||.|..|.+..++.++|||||+|.+.++|.+|+..|+|..+.|++|.
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 456899999999999999999999 9999999999999977677789999999999999999999999999999999
Q ss_pred EEecCCC
Q 025499 77 VELAHGG 83 (252)
Q Consensus 77 v~~~~~~ 83 (252)
|.++.+.
T Consensus 83 v~~a~~~ 89 (97)
T 1nu4_A 83 IQYAKTD 89 (97)
T ss_dssp EEECSSC
T ss_pred EEEccCC
Confidence 9999876
No 52
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=5.1e-21 Score=127.90 Aligned_cols=81 Identities=25% Similarity=0.489 Sum_probs=75.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEe
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (252)
..++++|||+|||.++|+++|+++|++||+|..|.+.. ++.++|||||+|.+.++|.+|+. |++..|+|++|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 37889999999999999999999999999999999965 46789999999999999999999 999999999999999
Q ss_pred cCCCC
Q 025499 80 AHGGS 84 (252)
Q Consensus 80 ~~~~~ 84 (252)
+.+..
T Consensus 86 a~~~~ 90 (99)
T 2dgs_A 86 AEPRD 90 (99)
T ss_dssp CCCCC
T ss_pred CCCCc
Confidence 98763
No 53
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=7.3e-21 Score=128.06 Aligned_cols=82 Identities=27% Similarity=0.475 Sum_probs=75.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecC-CCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (252)
..+.++|||+|||+++|+++|+++|++||.|..|.+..+ ..+++||||+|.+.++|.+|+..|++..|+|++|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 367899999999999999999999999999999999654 3578999999999999999999999999999999999998
Q ss_pred CCC
Q 025499 82 GGS 84 (252)
Q Consensus 82 ~~~ 84 (252)
+..
T Consensus 92 ~~~ 94 (103)
T 2cq3_A 92 ARV 94 (103)
T ss_dssp SSC
T ss_pred cCC
Confidence 763
No 54
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.86 E-value=2e-21 Score=126.12 Aligned_cols=79 Identities=32% Similarity=0.546 Sum_probs=73.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEe
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (252)
..++++|||+|||+++|+++|+++|++||+|..|.+.. ++.++|||||+|.+.++|.+|+..|+|..++|++|.|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 36889999999999999999999999999999999843 467799999999999999999999999999999999998
Q ss_pred cC
Q 025499 80 AH 81 (252)
Q Consensus 80 ~~ 81 (252)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 55
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.86 E-value=2.9e-21 Score=124.78 Aligned_cols=78 Identities=22% Similarity=0.402 Sum_probs=73.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecCC
Q 025499 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (252)
Q Consensus 6 ~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (252)
+++|||+|||+++|+++|+++|++||+|.++.+.. ++.++|||||+|.+.++|.+|+..|+|..++|++|.|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 47899999999999999999999999999999964 467799999999999999999999999999999999999986
Q ss_pred C
Q 025499 83 G 83 (252)
Q Consensus 83 ~ 83 (252)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 5
No 56
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.5e-21 Score=130.39 Aligned_cols=81 Identities=33% Similarity=0.512 Sum_probs=75.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
.++++|||+|||+++|+++|+++|++||+|..|.+.. ++.++|||||+|.+.++|.+|+..|++..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 6789999999999999999999999999999999964 4678899999999999999999999999999999999999
Q ss_pred CCCC
Q 025499 81 HGGS 84 (252)
Q Consensus 81 ~~~~ 84 (252)
.+..
T Consensus 93 ~~~~ 96 (103)
T 2cq0_A 93 KPST 96 (103)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8763
No 57
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.6e-21 Score=129.13 Aligned_cols=81 Identities=28% Similarity=0.398 Sum_probs=76.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
.+.++|||+|||+++|+++|+++|++||+|..|.+.. ++.++|||||+|.+.++|.+|+..|++..|.|++|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 6789999999999999999999999999999999965 5678999999999999999999999999999999999999
Q ss_pred CCCC
Q 025499 81 HGGS 84 (252)
Q Consensus 81 ~~~~ 84 (252)
.+..
T Consensus 93 ~~~~ 96 (105)
T 1x5u_A 93 SAHN 96 (105)
T ss_dssp TTTS
T ss_pred CCCC
Confidence 8763
No 58
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.3e-21 Score=130.35 Aligned_cols=81 Identities=31% Similarity=0.509 Sum_probs=75.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
.+.++|||+|||+.+|+++|+++|++||+|..|.+.. ++.++|||||+|.+.++|.+|+..|++..|.|++|.|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 6789999999999999999999999999999999955 3678999999999999999999999999999999999999
Q ss_pred CCCC
Q 025499 81 HGGS 84 (252)
Q Consensus 81 ~~~~ 84 (252)
.+..
T Consensus 90 ~~~~ 93 (102)
T 2cqb_A 90 KPMR 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8763
No 59
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.86 E-value=5.2e-22 Score=130.82 Aligned_cols=79 Identities=19% Similarity=0.290 Sum_probs=70.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCc--eeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCc----ccCCee
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGR--ILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGY----NFDGCR 74 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~--v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~----~~~g~~ 74 (252)
..=.+|||+|||+++|+++|+++|++||. |.+|.+.. ++.++|||||+|.+.++|.+|++.|||. .|+|++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 44578999999999999999999999995 67888854 4789999999999999999999999986 489999
Q ss_pred EEEEecCC
Q 025499 75 LRVELAHG 82 (252)
Q Consensus 75 i~v~~~~~ 82 (252)
|.|.|++.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999874
No 60
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=9.4e-21 Score=129.95 Aligned_cols=82 Identities=20% Similarity=0.268 Sum_probs=75.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec--CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
..++++|||+|||+++|+++|+++|++||.|.+|.+.. ++.+++||||+|.+.++|.+|+..|++..|.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 36789999999999999999999999999999999955 4567899999999999999999999999999999999998
Q ss_pred CCCC
Q 025499 81 HGGS 84 (252)
Q Consensus 81 ~~~~ 84 (252)
....
T Consensus 92 ~~~~ 95 (114)
T 2do0_A 92 ERAL 95 (114)
T ss_dssp SCCC
T ss_pred ccCC
Confidence 7653
No 61
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=4.8e-21 Score=128.32 Aligned_cols=79 Identities=18% Similarity=0.181 Sum_probs=71.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCC--cccCCeeEEEEec
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG--YNFDGCRLRVELA 80 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~--~~~~g~~i~v~~~ 80 (252)
..|+++|||+|||+++|+++|+++|++||.|.+|.+..+ +|||||+|.+.++|.+|+..|++ ..|.|++|.|.++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF---KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 367899999999999999999999999999999998754 89999999999999999998865 4599999999999
Q ss_pred CCCC
Q 025499 81 HGGS 84 (252)
Q Consensus 81 ~~~~ 84 (252)
....
T Consensus 89 ~~~~ 92 (104)
T 1wex_A 89 TSKR 92 (104)
T ss_dssp SSSS
T ss_pred cCcc
Confidence 8763
No 62
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.86 E-value=1.2e-21 Score=163.46 Aligned_cols=76 Identities=14% Similarity=0.210 Sum_probs=70.2
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCC----CcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEe
Q 025499 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (252)
Q Consensus 123 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v 198 (252)
+..+|||+|||..+|+++|.++|++||.|+.|.|+.+.. .|||||+|.+.++|..||..|||..|. |+.|.|
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~----gr~i~V 176 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKID----GRRVLV 176 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEEC----CEEEEE
Confidence 457999999999999999999999999999999987753 379999999999999999999999999 999999
Q ss_pred eecC
Q 025499 199 KRYD 202 (252)
Q Consensus 199 ~~~~ 202 (252)
..+.
T Consensus 177 ~~a~ 180 (437)
T 3pgw_S 177 DVER 180 (437)
T ss_pred EEeC
Confidence 8876
No 63
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=2.8e-21 Score=130.09 Aligned_cols=80 Identities=35% Similarity=0.502 Sum_probs=75.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecC---CCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
.+.++|||+|||+++|+++|+++|++||.|..|.+..+ +.++|||||+|.+.++|.+|+..|++..|+|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 67899999999999999999999999999999999653 678999999999999999999999999999999999999
Q ss_pred CCC
Q 025499 81 HGG 83 (252)
Q Consensus 81 ~~~ 83 (252)
...
T Consensus 91 ~~~ 93 (103)
T 2dnm_A 91 RYG 93 (103)
T ss_dssp SSC
T ss_pred CcC
Confidence 876
No 64
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.6e-20 Score=129.18 Aligned_cols=80 Identities=25% Similarity=0.369 Sum_probs=74.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEe
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (252)
..+.++|||+|||+++|+++|+++|++||+|..|.+.. ++.++|||||+|.+.++|++|+..|++ .|.|++|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 46789999999999999999999999999999999955 467899999999999999999999998 89999999999
Q ss_pred cCCC
Q 025499 80 AHGG 83 (252)
Q Consensus 80 ~~~~ 83 (252)
+...
T Consensus 93 a~~~ 96 (116)
T 2cqd_A 93 AYLG 96 (116)
T ss_dssp STTT
T ss_pred cccC
Confidence 9765
No 65
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.4e-21 Score=126.92 Aligned_cols=80 Identities=23% Similarity=0.337 Sum_probs=74.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHH----HHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEe
Q 025499 4 RFSRTIYVGNLPSDIREYEVE----DLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~----~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (252)
.+.++|||+|||+++|+++|+ ++|++||+|.+|.+..+...++||||+|.+.++|.+|+..|||..|+|++|.|.+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 467899999999999999999 9999999999999976544489999999999999999999999999999999999
Q ss_pred cCCC
Q 025499 80 AHGG 83 (252)
Q Consensus 80 ~~~~ 83 (252)
+.+.
T Consensus 87 a~~~ 90 (96)
T 2dgx_A 87 ATGA 90 (96)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 9765
No 66
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.86 E-value=3.8e-21 Score=126.76 Aligned_cols=81 Identities=26% Similarity=0.379 Sum_probs=76.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec-CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI-PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~-~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (252)
..+.++|||+|||+++|+++|+++|++||+|..|.+.. ++.++|||||+|.+.++|.+|+..|++..|.|+.|.|.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 47899999999999999999999999999999999965 56788999999999999999999999999999999999998
Q ss_pred CC
Q 025499 82 GG 83 (252)
Q Consensus 82 ~~ 83 (252)
+.
T Consensus 85 ~~ 86 (92)
T 2dgv_A 85 NA 86 (92)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 67
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.86 E-value=3.3e-21 Score=132.40 Aligned_cols=81 Identities=21% Similarity=0.512 Sum_probs=75.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
.+.++|||+|||+++|+++|+++|++||.|.+|.+.. ++.++|||||+|.+.++|++|+..|++..|.|++|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 5679999999999999999999999999999999965 4677899999999999999999999999999999999999
Q ss_pred CCCC
Q 025499 81 HGGS 84 (252)
Q Consensus 81 ~~~~ 84 (252)
.+..
T Consensus 103 ~~~~ 106 (115)
T 2cpz_A 103 RSKN 106 (115)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 8763
No 68
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4.7e-21 Score=128.80 Aligned_cols=81 Identities=35% Similarity=0.551 Sum_probs=75.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
.+.++|||+|||+++|+++|+++|++||+|..|.+.. ++.++|||||+|.+.++|.+|+..|++..|.|++|.|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 6889999999999999999999999999999999965 4578999999999999999999999999999999999999
Q ss_pred CCCC
Q 025499 81 HGGS 84 (252)
Q Consensus 81 ~~~~ 84 (252)
.+..
T Consensus 90 ~~~~ 93 (102)
T 1x5s_A 90 GKSS 93 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8763
No 69
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=4.6e-21 Score=128.33 Aligned_cols=80 Identities=23% Similarity=0.438 Sum_probs=74.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec--CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (252)
.+.++|||+|||+++|+++|+++|++||+|..|.+.. ++.++|||||+|.+.++|.+|+..|++..|.|++|.|.++.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 5689999999999999999999999999999999965 45678999999999999999999999999999999999998
Q ss_pred CC
Q 025499 82 GG 83 (252)
Q Consensus 82 ~~ 83 (252)
+.
T Consensus 95 ~~ 96 (100)
T 2do4_A 95 SG 96 (100)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 70
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=9.2e-21 Score=128.52 Aligned_cols=82 Identities=24% Similarity=0.398 Sum_probs=75.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec----CCCCCeEEEEEECCHHHHHHHHHhc-CCcccCCeeEEE
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI----PPRPPCYCFVEFENARDAEDAIRGR-DGYNFDGCRLRV 77 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~----~~~~~g~afV~f~~~~~a~~a~~~l-~~~~~~g~~i~v 77 (252)
..++++|||+|||+.+|+++|+++|++||+|..|.+.. ++.++|||||+|.+.++|.+|+..| ++..|.|++|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 36789999999999999999999999999999999943 4678999999999999999999999 999999999999
Q ss_pred EecCCCC
Q 025499 78 ELAHGGS 84 (252)
Q Consensus 78 ~~~~~~~ 84 (252)
.++.+..
T Consensus 92 ~~a~~~~ 98 (107)
T 2cph_A 92 EWADSEV 98 (107)
T ss_dssp EECCCCC
T ss_pred EeCCCCC
Confidence 9998763
No 71
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4e-21 Score=130.05 Aligned_cols=80 Identities=24% Similarity=0.422 Sum_probs=74.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecC---CCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
.++++|||+|||+.+|+++|+++|+.||+|.+|.+..+ +.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 56789999999999999999999999999999999653 677899999999999999999999999999999999999
Q ss_pred CCC
Q 025499 81 HGG 83 (252)
Q Consensus 81 ~~~ 83 (252)
.++
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 865
No 72
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.85 E-value=6.7e-21 Score=128.72 Aligned_cols=82 Identities=24% Similarity=0.304 Sum_probs=75.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec--CCCCCeEEEEEECCHHHHHHHHHhcCCcccCC---eeEEEE
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG---CRLRVE 78 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g---~~i~v~ 78 (252)
.++++|||+|||+++|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|.+|+..|++..+.| ++|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 5689999999999999999999999999999999965 46678999999999999999999999999988 999999
Q ss_pred ecCCCCC
Q 025499 79 LAHGGSG 85 (252)
Q Consensus 79 ~~~~~~~ 85 (252)
++.+...
T Consensus 93 ~a~~~~~ 99 (105)
T 2dnh_A 93 FADTDKE 99 (105)
T ss_dssp ESCSSCC
T ss_pred ECccCcc
Confidence 9987744
No 73
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=5.2e-21 Score=126.62 Aligned_cols=78 Identities=21% Similarity=0.414 Sum_probs=73.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecC---CCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
.+.++|||+|||+++|+++|+++|++||+|..|.+..+ +.++|||||+|.+.++|.+|+..|++..|.|++|.|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 57889999999999999999999999999999999653 678999999999999999999999999999999999997
Q ss_pred C
Q 025499 81 H 81 (252)
Q Consensus 81 ~ 81 (252)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 74
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.85 E-value=5.5e-21 Score=124.91 Aligned_cols=80 Identities=25% Similarity=0.486 Sum_probs=73.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCC---C-CCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEe
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP---R-PPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~---~-~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (252)
...++|||+|||+++|+++|+++|++||.|.+|.+..+. . ++|||||+|.+.++|.+|+..|+|..++|+.|.|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 457899999999999999999999999999999995532 2 789999999999999999999999999999999999
Q ss_pred cCCC
Q 025499 80 AHGG 83 (252)
Q Consensus 80 ~~~~ 83 (252)
+.+.
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 9765
No 75
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.3e-20 Score=123.67 Aligned_cols=77 Identities=34% Similarity=0.623 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecCC
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (252)
..+.++|||+|||+++|+++|+++|++||+|..|.+. ++||||+|.+.++|.+|+..|++..|+|++|.|.++.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 4788999999999999999999999999999999997 78999999999999999999999999999999999987
Q ss_pred CC
Q 025499 83 GS 84 (252)
Q Consensus 83 ~~ 84 (252)
..
T Consensus 80 ~~ 81 (90)
T 2dnq_A 80 KS 81 (90)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 76
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4.9e-21 Score=127.01 Aligned_cols=79 Identities=30% Similarity=0.444 Sum_probs=73.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecC---CCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
.++++|||+|||+.+|+++|+++|++||+|..|.+..+ +.++|||||+|.+.++|.+|+..|+|..|.|++|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 67899999999999999999999999999999999653 577899999999999999999999999999999999998
Q ss_pred CC
Q 025499 81 HG 82 (252)
Q Consensus 81 ~~ 82 (252)
..
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 77
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=4.2e-21 Score=128.33 Aligned_cols=82 Identities=22% Similarity=0.454 Sum_probs=75.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhcCcee-EEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCee---
Q 025499 2 SGRFSRTIYVGNLPSDIREYEVEDLFYKYGRIL-DIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR--- 74 (252)
Q Consensus 2 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~-~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~--- 74 (252)
+..++++|||+|||+++|+++|+++|++||+|. +|.+.. ++.++|||||+|.+.++|++|+..|+|..+.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 457899999999999999999999999999999 999954 4677899999999999999999999999999999
Q ss_pred -EEEEecCCC
Q 025499 75 -LRVELAHGG 83 (252)
Q Consensus 75 -i~v~~~~~~ 83 (252)
|.|.++.+.
T Consensus 85 ~l~v~~a~~~ 94 (99)
T 2div_A 85 RFKLNYATYS 94 (99)
T ss_dssp ECCEEETTCC
T ss_pred eEEEeecCCC
Confidence 999998765
No 78
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=9.7e-21 Score=127.68 Aligned_cols=80 Identities=24% Similarity=0.396 Sum_probs=74.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecC----CCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEE
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP----PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~----~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 78 (252)
..+.++|||+|||+++|+++|+++|+.|| |..|.+..+ +.++|||||+|.+.++|.+|+ .|++..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 46789999999999999999999999999 999999654 677999999999999999999 799999999999999
Q ss_pred ecCCCC
Q 025499 79 LAHGGS 84 (252)
Q Consensus 79 ~~~~~~ 84 (252)
++.+..
T Consensus 90 ~a~~~~ 95 (104)
T 1wi8_A 90 VADQAQ 95 (104)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 998763
No 79
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.5e-20 Score=123.76 Aligned_cols=76 Identities=34% Similarity=0.610 Sum_probs=72.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecCC
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (252)
..+.++|||+|||+++|+++|+++|++||.|..|.+. ++||||+|.+.++|.+|+..|++..|.|+.|.|.++.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 4788999999999999999999999999999999997 56999999999999999999999999999999999987
Q ss_pred C
Q 025499 83 G 83 (252)
Q Consensus 83 ~ 83 (252)
.
T Consensus 82 ~ 82 (92)
T 2dgt_A 82 R 82 (92)
T ss_dssp C
T ss_pred C
Confidence 6
No 80
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.1e-20 Score=128.94 Aligned_cols=81 Identities=20% Similarity=0.412 Sum_probs=75.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcC------CcccCCee
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRD------GYNFDGCR 74 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~------~~~~~g~~ 74 (252)
.++++|||+|||+++|+++|+++|++||+|.+|.+.. ++.++|||||+|.+.++|.+|+..|+ +..|+|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 5789999999999999999999999999999999965 36789999999999999999999999 99999999
Q ss_pred EEEEecCCCC
Q 025499 75 LRVELAHGGS 84 (252)
Q Consensus 75 i~v~~~~~~~ 84 (252)
|.|.++.+..
T Consensus 93 l~v~~a~~~~ 102 (111)
T 1x4h_A 93 LKVDLAVTRD 102 (111)
T ss_dssp EEEECCCCCC
T ss_pred EEEEECCCCc
Confidence 9999998763
No 81
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.85 E-value=1.2e-20 Score=127.63 Aligned_cols=82 Identities=16% Similarity=0.292 Sum_probs=75.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCccc---CCeeEE
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNF---DGCRLR 76 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~---~g~~i~ 76 (252)
..+.++|||+|||+++|+++|+++|++||+|..|.+.. ++.++|||||+|.+.++|.+|+..|++..+ .|++|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 46789999999999999999999999999999999965 467899999999999999999999999887 899999
Q ss_pred EEecCCCC
Q 025499 77 VELAHGGS 84 (252)
Q Consensus 77 v~~~~~~~ 84 (252)
|.++.+..
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99998763
No 82
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.1e-20 Score=125.72 Aligned_cols=77 Identities=22% Similarity=0.429 Sum_probs=72.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccC--CeeEEEEecC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD--GCRLRVELAH 81 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~--g~~i~v~~~~ 81 (252)
.++++|||+|||+++|+++|+++|++||+|.+|.+... ++||||+|.+.++|++|+..|++..|. |++|.|.++.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 67899999999999999999999999999999998754 789999999999999999999999999 9999999998
Q ss_pred CC
Q 025499 82 GG 83 (252)
Q Consensus 82 ~~ 83 (252)
++
T Consensus 92 ~~ 93 (97)
T 1why_A 92 SG 93 (97)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 83
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.4e-20 Score=126.83 Aligned_cols=83 Identities=20% Similarity=0.270 Sum_probs=75.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCc-eeEEEEe-c---CCCCCeEEEEEECCHHHHHHHHHhcC--CcccCCeeE
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGR-ILDIELK-I---PPRPPCYCFVEFENARDAEDAIRGRD--GYNFDGCRL 75 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~-v~~v~~~-~---~~~~~g~afV~f~~~~~a~~a~~~l~--~~~~~g~~i 75 (252)
+.++++|||+|||+++|+++|+++|+.||. |.+|.+. . ++.++|||||+|.+.++|.+|+..|+ +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 467899999999999999999999999998 9999986 3 35789999999999999999999996 589999999
Q ss_pred EEEecCCCCC
Q 025499 76 RVELAHGGSG 85 (252)
Q Consensus 76 ~v~~~~~~~~ 85 (252)
.|.++.+...
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999987643
No 84
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6.1e-21 Score=127.83 Aligned_cols=78 Identities=17% Similarity=0.361 Sum_probs=72.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecC--CCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (252)
.+.++|||+|||+++|+++|.++|++||+|.+|.+..+ +.++|||||+|.+.++|.+|+. +++..|+|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 56789999999999999999999999999999999653 6789999999999999999999 99999999999999976
Q ss_pred C
Q 025499 82 G 82 (252)
Q Consensus 82 ~ 82 (252)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 85
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.84 E-value=6.5e-21 Score=126.41 Aligned_cols=80 Identities=25% Similarity=0.406 Sum_probs=74.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecC--CCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
..+.++|||+|||+.+|+++|+++|++||+|.+|.+..+ +.++|||||+|.+.++|.+|+..|++..|+|++|.|.++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 467899999999999999999999999999999999653 567899999999999999999999999999999999998
Q ss_pred CC
Q 025499 81 HG 82 (252)
Q Consensus 81 ~~ 82 (252)
..
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 86
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.6e-20 Score=126.33 Aligned_cols=77 Identities=22% Similarity=0.250 Sum_probs=72.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCC-----eeEEEE
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG-----CRLRVE 78 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g-----~~i~v~ 78 (252)
.+.++|||+|||+++|+++|+++|++||+|..|.+..+ |||||+|.+.++|++||..||+..|.| +.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 56789999999999999999999999999999999765 899999999999999999999999999 999999
Q ss_pred ecCCCC
Q 025499 79 LAHGGS 84 (252)
Q Consensus 79 ~~~~~~ 84 (252)
++.+..
T Consensus 89 ~a~~~~ 94 (108)
T 1x4c_A 89 VDGPRS 94 (108)
T ss_dssp ESSCCS
T ss_pred eCCCCC
Confidence 998763
No 87
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=5.4e-21 Score=128.93 Aligned_cols=79 Identities=25% Similarity=0.322 Sum_probs=72.0
Q ss_pred CCCCCcEEEEcCCCCC-CCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcC--CcccCCeeEEEE
Q 025499 2 SGRFSRTIYVGNLPSD-IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD--GYNFDGCRLRVE 78 (252)
Q Consensus 2 ~~~~~~~l~v~~lp~~-~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~--~~~~~g~~i~v~ 78 (252)
...|+++|||+|||++ +|+++|+++|++||+|.+|.|.. ++|||||+|.+.++|.+|+..|+ +..|.|++|.|.
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 97 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR---MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVD 97 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEE
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec---CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 3478999999999998 99999999999999999999974 48999999999999999999885 466999999999
Q ss_pred ecCCC
Q 025499 79 LAHGG 83 (252)
Q Consensus 79 ~~~~~ 83 (252)
++...
T Consensus 98 ~a~~~ 102 (112)
T 1x4f_A 98 LSEKY 102 (112)
T ss_dssp EECSC
T ss_pred ECccc
Confidence 99765
No 88
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.84 E-value=5.8e-21 Score=133.44 Aligned_cols=81 Identities=30% Similarity=0.452 Sum_probs=75.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEe
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (252)
..++++|||+|||+++|+++|+++|++||+|..|.+.. ++.++|||||+|.+.++|++|+..|+|..|.|++|.|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 36889999999999999999999999999999999965 367899999999999999999999999999999999999
Q ss_pred cCCC
Q 025499 80 AHGG 83 (252)
Q Consensus 80 ~~~~ 83 (252)
+.++
T Consensus 123 a~~~ 126 (129)
T 2kxn_B 123 SITK 126 (129)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 9876
No 89
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.84 E-value=7.8e-21 Score=129.50 Aligned_cols=80 Identities=23% Similarity=0.386 Sum_probs=74.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
.++++|||+|||+.+|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|.+|+..|+|..|+|++|.|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 5678999999999999999999999999999999954 4678999999999999999999999999999999999999
Q ss_pred CCC
Q 025499 81 HGG 83 (252)
Q Consensus 81 ~~~ 83 (252)
.+.
T Consensus 104 ~~~ 106 (110)
T 1oo0_B 104 FVK 106 (110)
T ss_dssp EES
T ss_pred ccC
Confidence 865
No 90
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.1e-20 Score=127.53 Aligned_cols=80 Identities=13% Similarity=0.219 Sum_probs=72.9
Q ss_pred CCCCCcEEEE--cCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCccc-----CCee
Q 025499 2 SGRFSRTIYV--GNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF-----DGCR 74 (252)
Q Consensus 2 ~~~~~~~l~v--~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~-----~g~~ 74 (252)
+..|+++||| +||+.++|+++|+++|++||+|.+|.+.. .+|||||+|.+.++|++|++.|||..+ .|++
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~---~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT---TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 4688999999 77999999999999999999999998864 389999999999999999999999988 6899
Q ss_pred EEEEecCCCC
Q 025499 75 LRVELAHGGS 84 (252)
Q Consensus 75 i~v~~~~~~~ 84 (252)
|+|.++...+
T Consensus 98 l~v~~a~~~p 107 (114)
T 2cq2_A 98 LYLNFVEKVQ 107 (114)
T ss_dssp CEEEEESCCC
T ss_pred EEEEecccCc
Confidence 9999998653
No 91
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.2e-20 Score=122.46 Aligned_cols=76 Identities=32% Similarity=0.549 Sum_probs=72.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecCC
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (252)
..+.++|||+|||+++|+++|+++|++||.|..|.+. ++||||+|.+.++|++|+..|+|..++|++|.|.++.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 3678999999999999999999999999999999997 56999999999999999999999999999999999987
Q ss_pred C
Q 025499 83 G 83 (252)
Q Consensus 83 ~ 83 (252)
.
T Consensus 81 ~ 81 (90)
T 2dnp_A 81 G 81 (90)
T ss_dssp C
T ss_pred C
Confidence 6
No 92
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.84 E-value=1e-20 Score=128.18 Aligned_cols=81 Identities=26% Similarity=0.464 Sum_probs=75.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEe
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (252)
..++++|||+|||+.+|+++|+++|++||+|..|.+.. ++.++|||||+|.+.++|.+|+..|+|..|.|++|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 36789999999999999999999999999999999954 467789999999999999999999999999999999999
Q ss_pred cCCC
Q 025499 80 AHGG 83 (252)
Q Consensus 80 ~~~~ 83 (252)
+.++
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 9765
No 93
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.84 E-value=1.6e-21 Score=127.94 Aligned_cols=77 Identities=14% Similarity=0.180 Sum_probs=67.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcC--ceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 025499 7 RTIYVGNLPSDIREYEVEDLFYKYG--RILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (252)
Q Consensus 7 ~~l~v~~lp~~~t~~~l~~~f~~~G--~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (252)
.+|||+|||+++|+++|+++|++|| .|.+|.+.. ++.++|||||+|.+.++|.+|++.|+|..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 999999855 56889999999999999999999999999999999999998
Q ss_pred CC
Q 025499 82 GG 83 (252)
Q Consensus 82 ~~ 83 (252)
+.
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 76
No 94
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=1.9e-20 Score=125.96 Aligned_cols=80 Identities=28% Similarity=0.490 Sum_probs=73.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecC---CCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEe
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (252)
..+.++|||+|||+++|+++|+++|++|| |.+|.+..+ +.++|||||+|.+.++|.+|+ .|++..|.|++|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 47889999999999999999999999997 999999653 677899999999999999999 7999999999999999
Q ss_pred cCCCC
Q 025499 80 AHGGS 84 (252)
Q Consensus 80 ~~~~~ 84 (252)
+.+..
T Consensus 90 a~~~~ 94 (103)
T 2dng_A 90 AEGRK 94 (103)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 98763
No 95
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.84 E-value=2.1e-21 Score=129.81 Aligned_cols=80 Identities=24% Similarity=0.341 Sum_probs=74.0
Q ss_pred CCCcEEEEcCCCC------CCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCC-e
Q 025499 4 RFSRTIYVGNLPS------DIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG-C 73 (252)
Q Consensus 4 ~~~~~l~v~~lp~------~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g-~ 73 (252)
..+++|||+|||+ ++++++|+++|++||.|.+|.+.. ++.++|||||+|.+.++|.+|+..|||..|.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4678999999999 999999999999999999999954 47789999999999999999999999999999 9
Q ss_pred eEEEEecCCC
Q 025499 74 RLRVELAHGG 83 (252)
Q Consensus 74 ~i~v~~~~~~ 83 (252)
+|.|.++.+.
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999998653
No 96
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.84 E-value=1.1e-20 Score=127.94 Aligned_cols=79 Identities=16% Similarity=0.119 Sum_probs=72.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcC-ceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecCC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G-~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (252)
...++|||+|||+++|+++|+++|++|| +|..+.+.. +.++|||||+|.+.++|++|+..|||..|.|+.|.|.++..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~-~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT-RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS-CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc-CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 4567999999999999999999999999 999998853 35799999999999999999999999999999999999875
Q ss_pred C
Q 025499 83 G 83 (252)
Q Consensus 83 ~ 83 (252)
.
T Consensus 105 ~ 105 (111)
T 2jvr_A 105 P 105 (111)
T ss_dssp -
T ss_pred C
Confidence 4
No 97
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.1e-20 Score=126.22 Aligned_cols=78 Identities=22% Similarity=0.411 Sum_probs=73.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (252)
.+.++|||+|||+.+|+++|+++|++||.|..|.+..+ +|||||+|.+.++|.+|+..|+|..|.|++|.|.++.+.
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 56889999999999999999999999999999999765 899999999999999999999999999999999999876
Q ss_pred C
Q 025499 84 S 84 (252)
Q Consensus 84 ~ 84 (252)
.
T Consensus 100 ~ 100 (109)
T 1x4g_A 100 P 100 (109)
T ss_dssp C
T ss_pred C
Confidence 3
No 98
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.5e-20 Score=128.66 Aligned_cols=81 Identities=26% Similarity=0.421 Sum_probs=74.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCcee--------EEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRIL--------DIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~--------~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g 72 (252)
.+.++|||+|||+++|+++|+++|++||.|. .|.+.. ++.++|||||+|.+.++|.+|+..|++..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 5789999999999999999999999999998 588854 46789999999999999999999999999999
Q ss_pred eeEEEEecCCCC
Q 025499 73 CRLRVELAHGGS 84 (252)
Q Consensus 73 ~~i~v~~~~~~~ 84 (252)
+.|.|.++.+..
T Consensus 93 ~~l~V~~a~~~~ 104 (113)
T 2cpe_A 93 SKLKVSLARKKP 104 (113)
T ss_dssp EECEEECSSCCC
T ss_pred CEEEEEECCCCC
Confidence 999999998763
No 99
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2e-20 Score=126.16 Aligned_cols=82 Identities=18% Similarity=0.304 Sum_probs=76.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhh-cCceeEEEEec--CCCCCeEEEEEECCHHHHHHHHHhcCCcc-cCCeeEEEE
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYK-YGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYN-FDGCRLRVE 78 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~-~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~-~~g~~i~v~ 78 (252)
..++++|||+|||+++|+++|+++|++ ||.|.+|.+.. ++.++|||||+|.+.++|.+|+..|++.. |+|++|.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 367899999999999999999999999 99999999955 56788999999999999999999999999 999999999
Q ss_pred ecCCCC
Q 025499 79 LAHGGS 84 (252)
Q Consensus 79 ~~~~~~ 84 (252)
++.+..
T Consensus 86 ~a~~~~ 91 (104)
T 2dhg_A 86 VAIPKA 91 (104)
T ss_dssp BCCCCC
T ss_pred EccCCC
Confidence 997663
No 100
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=7.4e-21 Score=129.67 Aligned_cols=80 Identities=23% Similarity=0.359 Sum_probs=73.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHH---HHHhhcCceeEEEEecCC------CCCeEEEEEECCHHHHHHHHHhcCCcccCCee
Q 025499 4 RFSRTIYVGNLPSDIREYEVE---DLFYKYGRILDIELKIPP------RPPCYCFVEFENARDAEDAIRGRDGYNFDGCR 74 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~---~~f~~~G~v~~v~~~~~~------~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~ 74 (252)
.+.++|||+|||+++|+++|. ++|++||+|..|.+..+. .++|||||+|.+.++|++|+..|||..|+|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 467899999999999999999 999999999999996532 46699999999999999999999999999999
Q ss_pred EEEEecCCC
Q 025499 75 LRVELAHGG 83 (252)
Q Consensus 75 i~v~~~~~~ 83 (252)
|.|.++.++
T Consensus 93 l~V~~a~~k 101 (111)
T 2cpi_A 93 LKASLGTTK 101 (111)
T ss_dssp EEEESCCCC
T ss_pred EEEEecccc
Confidence 999999876
No 101
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.84 E-value=1.6e-20 Score=127.24 Aligned_cols=78 Identities=22% Similarity=0.393 Sum_probs=73.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec--CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (252)
.++++|||+|||+.+|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|.+|+..|+|..|.|++|.|.++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 5789999999999999999999999999999999954 46778999999999999999999999999999999999975
No 102
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.84 E-value=1.1e-20 Score=130.46 Aligned_cols=79 Identities=24% Similarity=0.567 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEe
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (252)
..+.++|||+|||+++|+++|+++|++||+|.+|.+.. ++.++|||||+|.+.++|.+|+..|+|..|+|+.|.|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 35779999999999999999999999999999999964 467899999999999999999999999999999999998
Q ss_pred cC
Q 025499 80 AH 81 (252)
Q Consensus 80 ~~ 81 (252)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 103
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.4e-20 Score=128.13 Aligned_cols=80 Identities=21% Similarity=0.371 Sum_probs=73.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCce----eEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEe
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRI----LDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v----~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (252)
.++++|||+|||+++|+++|+++|++||.| ..+.+. ++.++|||||+|.+.++|.+|+..|+|..|.|++|.|.+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 578999999999999999999999999999 455554 788899999999999999999999999999999999999
Q ss_pred cCCCC
Q 025499 80 AHGGS 84 (252)
Q Consensus 80 ~~~~~ 84 (252)
+.+..
T Consensus 102 a~~~~ 106 (115)
T 2cpx_A 102 GKNKK 106 (115)
T ss_dssp CCCCS
T ss_pred ccCCC
Confidence 98763
No 104
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.2e-20 Score=128.19 Aligned_cols=80 Identities=28% Similarity=0.494 Sum_probs=74.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecC-CCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecCC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (252)
.+.++|||+|||.++|+++|+++|++||+|..|.+..+ +.++|||||+|.+.++|++|+..|+|..|+|++|.|.++.+
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 67899999999999999999999999999999999653 45789999999999999999999999999999999999976
Q ss_pred C
Q 025499 83 G 83 (252)
Q Consensus 83 ~ 83 (252)
+
T Consensus 107 ~ 107 (109)
T 2err_A 107 R 107 (109)
T ss_dssp S
T ss_pred C
Confidence 5
No 105
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.83 E-value=1.7e-20 Score=131.00 Aligned_cols=81 Identities=23% Similarity=0.422 Sum_probs=75.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
.++++|||+|||+.+|+++|.++|++||.|..|.|.. ++.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 5678999999999999999999999999999999954 4677999999999999999999999999999999999999
Q ss_pred CCCC
Q 025499 81 HGGS 84 (252)
Q Consensus 81 ~~~~ 84 (252)
.+..
T Consensus 100 ~~~~ 103 (126)
T 3ex7_B 100 FVRG 103 (126)
T ss_dssp EESS
T ss_pred cCCC
Confidence 8763
No 106
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.83 E-value=2.9e-20 Score=134.63 Aligned_cols=81 Identities=33% Similarity=0.481 Sum_probs=75.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecC---CCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
.++++|||+|||+.+|+++|+++|++||+|..|.|..+ +.+++||||+|.+.++|.+|+..|++..|.|++|.|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 47899999999999999999999999999999999653 567899999999999999999999999999999999999
Q ss_pred CCCC
Q 025499 81 HGGS 84 (252)
Q Consensus 81 ~~~~ 84 (252)
.+..
T Consensus 117 ~~~~ 120 (156)
T 1h2v_Z 117 AGFK 120 (156)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8764
No 107
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.83 E-value=1.5e-20 Score=125.58 Aligned_cols=78 Identities=28% Similarity=0.359 Sum_probs=72.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeE--------EEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILD--------IELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~--------v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g 72 (252)
.+.++|||+|||.++|+++|+++|++||.|.. |.+.. ++.++|||||+|.+.++|.+|++.|+|..+.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 67899999999999999999999999999999 88854 46788999999999999999999999999999
Q ss_pred eeEEEEecC
Q 025499 73 CRLRVELAH 81 (252)
Q Consensus 73 ~~i~v~~~~ 81 (252)
+.|.|.+++
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999874
No 108
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.83 E-value=2.4e-20 Score=121.55 Aligned_cols=77 Identities=23% Similarity=0.461 Sum_probs=70.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEe
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (252)
..+.++|||+|||+++|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|.+|+. +++..++|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 36889999999999999999999999999999999964 46789999999999999999997 688899999999987
Q ss_pred c
Q 025499 80 A 80 (252)
Q Consensus 80 ~ 80 (252)
+
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 109
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.83 E-value=2.9e-20 Score=121.68 Aligned_cols=78 Identities=22% Similarity=0.395 Sum_probs=72.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 025499 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (252)
Q Consensus 5 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (252)
..++|||+|||+++|+++|+++|++||.|.+|.+.. ++.++|||||+|.+.++|.+|+ .|+|..+.|+.|.|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 468999999999999999999999999999999954 5678999999999999999999 799999999999999987
Q ss_pred CC
Q 025499 82 GG 83 (252)
Q Consensus 82 ~~ 83 (252)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 110
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2.5e-20 Score=120.97 Aligned_cols=76 Identities=28% Similarity=0.471 Sum_probs=71.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhc-CCcccCCeeEEEEecC
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR-DGYNFDGCRLRVELAH 81 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l-~~~~~~g~~i~v~~~~ 81 (252)
..+.++|||+|||+.+|+++|+++|++||.|..|.+..+ +|||||+|.+.++|.+|+..| ++..++|++|.|.|++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~---kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR---QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG---GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC---CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 367889999999999999999999999999999999764 799999999999999999988 9999999999999874
No 111
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=2.8e-20 Score=124.26 Aligned_cols=77 Identities=32% Similarity=0.465 Sum_probs=72.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (252)
.+.++|||+|||+.+|+++|+++|++||+|..|.+..+ ++||||+|.+.++|.+|+..|++..|.|++|.|.++.+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~---kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD---KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT---TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC---CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 57789999999999999999999999999999999754 899999999999999999999999999999999999876
No 112
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.83 E-value=5.8e-20 Score=130.50 Aligned_cols=81 Identities=31% Similarity=0.581 Sum_probs=75.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
.+.++|||+|||.++|+++|+++|+.||+|.+|.+.. ++.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5679999999999999999999999999999999964 3567999999999999999999999999999999999999
Q ss_pred CCCC
Q 025499 81 HGGS 84 (252)
Q Consensus 81 ~~~~ 84 (252)
.+..
T Consensus 120 ~~~~ 123 (139)
T 1u6f_A 120 ASGH 123 (139)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8763
No 113
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.83 E-value=4.3e-20 Score=122.63 Aligned_cols=76 Identities=25% Similarity=0.544 Sum_probs=71.7
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 025499 3 GRFSRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (252)
Q Consensus 3 ~~~~~~l~v~~lp~-~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (252)
..++++|||+|||. ++|+++|+++|++||.|..|.+. +|||||+|.+.++|.+|+..|+|..++|+.|.|.++.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 36789999999998 99999999999999999999984 8999999999999999999999999999999999987
Q ss_pred CC
Q 025499 82 GG 83 (252)
Q Consensus 82 ~~ 83 (252)
..
T Consensus 94 ~~ 95 (97)
T 2xnq_A 94 SN 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 114
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.83 E-value=2.8e-20 Score=125.97 Aligned_cols=76 Identities=26% Similarity=0.471 Sum_probs=72.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (252)
.++++|||+|||+++|+++|+++|++||.|..|.+. +|||||+|.+.++|.+|+..|+|..|+|+.|.|.++.+.
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 678999999999999999999999999999999998 799999999999999999999999999999999999876
Q ss_pred C
Q 025499 84 S 84 (252)
Q Consensus 84 ~ 84 (252)
.
T Consensus 104 ~ 104 (108)
T 2jvo_A 104 A 104 (108)
T ss_dssp C
T ss_pred C
Confidence 3
No 115
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.83 E-value=9.7e-21 Score=121.65 Aligned_cols=72 Identities=28% Similarity=0.469 Sum_probs=66.9
Q ss_pred CcEEEEcCCCCCC------CHHHHHHHHhhcCceeEEEEe-cCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCe-eEEE
Q 025499 6 SRTIYVGNLPSDI------REYEVEDLFYKYGRILDIELK-IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC-RLRV 77 (252)
Q Consensus 6 ~~~l~v~~lp~~~------t~~~l~~~f~~~G~v~~v~~~-~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~-~i~v 77 (252)
+++|||+|||+.+ |+++|+++|++||+|.+|.+. .++.++|||||+|.+.++|.+|+..|||..|+|+ +|.|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 789999999999999999985 4678899999999999999999999999999999 8876
No 116
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.8e-20 Score=124.43 Aligned_cols=75 Identities=25% Similarity=0.514 Sum_probs=71.2
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecCC
Q 025499 4 RFSRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (252)
Q Consensus 4 ~~~~~l~v~~lp~-~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (252)
.++++|||+|||+ .+|+++|+++|++||.|..|.+. +|||||+|.+.++|.+|+..|+|..+.|++|.|.++.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 7899999999998 99999999999999999999995 79999999999999999999999999999999999976
Q ss_pred C
Q 025499 83 G 83 (252)
Q Consensus 83 ~ 83 (252)
.
T Consensus 83 ~ 83 (96)
T 2kvi_A 83 N 83 (96)
T ss_dssp C
T ss_pred C
Confidence 5
No 117
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.6e-20 Score=126.86 Aligned_cols=81 Identities=15% Similarity=0.284 Sum_probs=74.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEe
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (252)
..+.++|||+|||+.+|+++|+++|++||+|..|.+.. ++.++|||||+|.+.++|.+|+.. ++..|+|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 47889999999999999999999999999999999965 367789999999999999999997 99999999999999
Q ss_pred cCCCC
Q 025499 80 AHGGS 84 (252)
Q Consensus 80 ~~~~~ 84 (252)
+.++.
T Consensus 92 a~~~~ 96 (105)
T 2dh8_A 92 CTPRG 96 (105)
T ss_dssp SCCSS
T ss_pred ccCCC
Confidence 98763
No 118
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.6e-20 Score=122.91 Aligned_cols=78 Identities=21% Similarity=0.313 Sum_probs=71.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCc-eeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCC-cccCCeeEEEEec
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGR-ILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG-YNFDGCRLRVELA 80 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~-v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~-~~~~g~~i~v~~~ 80 (252)
..+.++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+..|+| ..|+|++|.|.++
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 478899999999999999999999999999 6666664 389999999999999999999999 9999999999999
Q ss_pred CCCC
Q 025499 81 HGGS 84 (252)
Q Consensus 81 ~~~~ 84 (252)
.+..
T Consensus 81 ~~~~ 84 (93)
T 2cqh_A 81 VSKK 84 (93)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 8763
No 119
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.83 E-value=1.7e-20 Score=126.53 Aligned_cols=80 Identities=26% Similarity=0.411 Sum_probs=73.8
Q ss_pred CCCcEEEEcCCCCCC------CHHHHHHHHhhcCceeEEEEe-cCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCe-eE
Q 025499 4 RFSRTIYVGNLPSDI------REYEVEDLFYKYGRILDIELK-IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC-RL 75 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~------t~~~l~~~f~~~G~v~~v~~~-~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~-~i 75 (252)
..+++|||+|||+.+ |+++|+++|++||.|..|.+. .++.++|||||+|.+.++|.+|+..|+|..|.|+ +|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 457899999999999 789999999999999999985 4678899999999999999999999999999998 99
Q ss_pred EEEecCCC
Q 025499 76 RVELAHGG 83 (252)
Q Consensus 76 ~v~~~~~~ 83 (252)
.|.++...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99998754
No 120
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.83 E-value=4.8e-20 Score=125.12 Aligned_cols=80 Identities=13% Similarity=0.263 Sum_probs=71.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
.+.++|||+|||+++|+++|+++|+.||.|.+|.+.. ++.++|||||+|.+.++|.+|+..+ +..++|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 6789999999999999999999999999999999965 3778999999999999999999966 59999999999999
Q ss_pred CCCC
Q 025499 81 HGGS 84 (252)
Q Consensus 81 ~~~~ 84 (252)
.+..
T Consensus 102 ~~~~ 105 (109)
T 2rs2_A 102 FPRR 105 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8763
No 121
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.4e-20 Score=124.32 Aligned_cols=79 Identities=24% Similarity=0.360 Sum_probs=71.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (252)
.++++|||+|||+++|+++|+++|++||.|. +....++.++|||||+|.+.++|++|+..|++..|.|+.|.|.++.+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIK-VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEE-CCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE-EEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 5789999999999999999999999999882 222345778999999999999999999999999999999999999876
No 122
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.83 E-value=2.5e-20 Score=130.89 Aligned_cols=81 Identities=17% Similarity=0.263 Sum_probs=74.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeE--EEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCc----ccCC
Q 025499 2 SGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILD--IELKI---PPRPPCYCFVEFENARDAEDAIRGRDGY----NFDG 72 (252)
Q Consensus 2 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~--v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~----~~~g 72 (252)
.+.++++|||+|||+++|+++|+++|++||.|.. |.|+. ++.++|||||+|.+. +|.+|+..|+|. .|+|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3467899999999999999999999999999966 88854 578899999999999 999999999999 9999
Q ss_pred eeEEEEecCCC
Q 025499 73 CRLRVELAHGG 83 (252)
Q Consensus 73 ~~i~v~~~~~~ 83 (252)
+.|.|.++.+.
T Consensus 98 r~l~V~~a~~~ 108 (131)
T 2m2b_A 98 KTINVEFAKGS 108 (131)
T ss_dssp CCCCCEECCCS
T ss_pred EEEEEEECCCC
Confidence 99999999875
No 123
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.82 E-value=3.3e-20 Score=133.68 Aligned_cols=79 Identities=13% Similarity=0.202 Sum_probs=72.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcC--ceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEe
Q 025499 5 FSRTIYVGNLPSDIREYEVEDLFYKYG--RILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (252)
Q Consensus 5 ~~~~l~v~~lp~~~t~~~l~~~f~~~G--~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (252)
..++|||+|||+++|+++|+++|+.|| .|.+|.+.. ++.++|||||+|.+.++|.+||..|+|..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 999999954 578899999999999999999999999999999999999
Q ss_pred cCCC
Q 025499 80 AHGG 83 (252)
Q Consensus 80 ~~~~ 83 (252)
+.+.
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8653
No 124
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=121.29 Aligned_cols=75 Identities=29% Similarity=0.421 Sum_probs=71.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhc--CceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKY--GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~--G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (252)
.++++|||+|||+++|+++|+++|++| |.|..|.+. ++||||+|.+.++|.+|+..|++..|.|++|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 999999875 7899999999999999999999999999999999998
Q ss_pred CC
Q 025499 82 GG 83 (252)
Q Consensus 82 ~~ 83 (252)
+.
T Consensus 88 ~~ 89 (99)
T 2cpd_A 88 PV 89 (99)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 125
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.82 E-value=9.8e-20 Score=126.68 Aligned_cols=80 Identities=21% Similarity=0.369 Sum_probs=75.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec--CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (252)
.++++|||+|||+.+|+++|+++|+.||+|..|.+.. ++.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 6778999999999999999999999999999999955 46789999999999999999999999999999999999998
Q ss_pred CC
Q 025499 82 GG 83 (252)
Q Consensus 82 ~~ 83 (252)
..
T Consensus 113 ~~ 114 (124)
T 2kt5_A 113 SQ 114 (124)
T ss_dssp CT
T ss_pred CC
Confidence 76
No 126
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.82 E-value=2.7e-20 Score=124.84 Aligned_cols=76 Identities=26% Similarity=0.467 Sum_probs=71.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecCC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (252)
..+++|||+|||.++|+++|+++|++||.|.+|.+. .++|||||+|.+.++|.+|+..|+|..|+|+.|.|.++.+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY---PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 457899999999999999999999999999999997 3589999999999999999999999999999999999865
No 127
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=3.6e-20 Score=126.11 Aligned_cols=77 Identities=26% Similarity=0.307 Sum_probs=71.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (252)
...++|||+|||+++|+++|+++|++||.|..|.+.. +++||||+|.+.++|.+|+..|||..|.|++|.|.|+...
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE---GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS---SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC---CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 4578999999999999999999999999999998864 4899999999999999999999999999999999999764
No 128
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.82 E-value=2.2e-20 Score=124.05 Aligned_cols=78 Identities=23% Similarity=0.351 Sum_probs=73.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (252)
.+.++|||+|||+.+|+++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|+|..|.|++|.|.++.+.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 578999999999999999999999999999887 567788999999999999999999999999999999999999776
No 129
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=4.6e-20 Score=122.68 Aligned_cols=78 Identities=26% Similarity=0.461 Sum_probs=71.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (252)
..+++|||+|||+++|+++|+++|++||.|. +.+.. +.++|||||+|.+.++|.+|+..|+|..|+|+.|.|.++.+.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW-QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc-CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 4589999999999999999999999999996 55543 467899999999999999999999999999999999999875
No 130
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.82 E-value=2.2e-20 Score=118.25 Aligned_cols=72 Identities=22% Similarity=0.330 Sum_probs=67.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 8 ~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
+|||+|||+++|+++|+++|++||+|.+|.+.. ++.++|||||+|.+.++|++|++ |++..++|++|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 589999999999999999999999999999854 46789999999999999999998 9999999999999875
No 131
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.6e-20 Score=126.61 Aligned_cols=80 Identities=31% Similarity=0.594 Sum_probs=74.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
.+.++|||+|||+.+|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 4678999999999999999999999999999999954 4677899999999999999999999999999999999999
Q ss_pred CCC
Q 025499 81 HGG 83 (252)
Q Consensus 81 ~~~ 83 (252)
.+.
T Consensus 86 ~~~ 88 (104)
T 1p1t_A 86 ASE 88 (104)
T ss_dssp TCT
T ss_pred CCc
Confidence 865
No 132
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2.1e-20 Score=124.62 Aligned_cols=80 Identities=23% Similarity=0.267 Sum_probs=72.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEe---cCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK---IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
...++|||+|||+++|+++|+++|++||.|..+.+. .++.++|||||+|.+.++|++|+..|++..|.|++|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 567899999999999999999999999999876653 35677899999999999999999999999999999999998
Q ss_pred CCC
Q 025499 81 HGG 83 (252)
Q Consensus 81 ~~~ 83 (252)
...
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 754
No 133
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.82 E-value=2.4e-20 Score=133.08 Aligned_cols=82 Identities=26% Similarity=0.406 Sum_probs=75.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeE--------EEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCee
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILD--------IELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR 74 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~--------v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~ 74 (252)
..++++|||+|||+.+|+++|+++|+.||.|.. +.+..++.++|||||+|.+.++|.+|+..|||..|.|++
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 368899999999999999999999999998876 555667889999999999999999999999999999999
Q ss_pred EEEEecCCCC
Q 025499 75 LRVELAHGGS 84 (252)
Q Consensus 75 i~v~~~~~~~ 84 (252)
|.|.++.+..
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999998653
No 134
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.2e-21 Score=123.80 Aligned_cols=79 Identities=16% Similarity=0.286 Sum_probs=72.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEe
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (252)
..++++|||+|||+++|+++|+++|++||+|..|.+.. ++.++|||||+|.+.++|.+|+..|+|..|.|+.|++.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 36889999999999999999999999999999999955 467899999999999999999999999999999998776
Q ss_pred cC
Q 025499 80 AH 81 (252)
Q Consensus 80 ~~ 81 (252)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 135
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.82 E-value=1.5e-20 Score=124.63 Aligned_cols=79 Identities=20% Similarity=0.229 Sum_probs=70.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
.+.++|||+|||+++|+++|+++|++||.|..+.+.. ++.++|||||+|.+.++|++|+..|++..|.|++|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 4568999999999999999999999999998776643 4677899999999999999999999999999999999987
Q ss_pred CC
Q 025499 81 HG 82 (252)
Q Consensus 81 ~~ 82 (252)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 53
No 136
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.9e-19 Score=121.08 Aligned_cols=80 Identities=18% Similarity=0.298 Sum_probs=73.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEe
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (252)
..+.++|||+|||+++|+++|+++|++||+|..|.+.. ++.++|||||+|.+.++|.+|+. ++..|+|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 36789999999999999999999999999999999965 36788999999999999999999 47899999999999
Q ss_pred cCCCC
Q 025499 80 AHGGS 84 (252)
Q Consensus 80 ~~~~~ 84 (252)
+.++.
T Consensus 90 a~~~~ 94 (103)
T 2cqg_A 90 PNSKQ 94 (103)
T ss_dssp CCTTC
T ss_pred cCCCC
Confidence 98763
No 137
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.82 E-value=1.6e-19 Score=131.11 Aligned_cols=80 Identities=34% Similarity=0.508 Sum_probs=75.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
.+.++|||+|||+++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..|+|..|.|++|.|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4578999999999999999999999999999999954 5788999999999999999999999999999999999999
Q ss_pred CCC
Q 025499 81 HGG 83 (252)
Q Consensus 81 ~~~ 83 (252)
.+.
T Consensus 148 ~~~ 150 (158)
T 2kn4_A 148 RYG 150 (158)
T ss_dssp CCS
T ss_pred CCC
Confidence 876
No 138
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=8.8e-20 Score=125.43 Aligned_cols=79 Identities=18% Similarity=0.341 Sum_probs=73.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecC---CCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 025499 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (252)
Q Consensus 5 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (252)
+.++|||+|||+++|+++|+++|+.||.|..|.+..+ +.++|||||+|.+.++|.+|+.. ++..|+|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 4589999999999999999999999999999999653 67899999999999999999996 9999999999999998
Q ss_pred CCC
Q 025499 82 GGS 84 (252)
Q Consensus 82 ~~~ 84 (252)
+..
T Consensus 105 ~~~ 107 (116)
T 1x4b_A 105 ARE 107 (116)
T ss_dssp SCC
T ss_pred CCc
Confidence 763
No 139
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.81 E-value=3.9e-20 Score=130.31 Aligned_cols=80 Identities=34% Similarity=0.508 Sum_probs=74.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
.+.++|||+|||+++|+++|+++|+.||+|..|.+.. ++.++|||||+|.+.++|++|+..|+|..|.|++|.|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 5678999999999999999999999999999999954 4678999999999999999999999999999999999999
Q ss_pred CCC
Q 025499 81 HGG 83 (252)
Q Consensus 81 ~~~ 83 (252)
.+.
T Consensus 125 ~~~ 127 (135)
T 2lea_A 125 RYG 127 (135)
T ss_dssp CCC
T ss_pred CCC
Confidence 876
No 140
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.81 E-value=6.5e-20 Score=133.95 Aligned_cols=82 Identities=22% Similarity=0.372 Sum_probs=74.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
.++++|||+|||+.+|+++|.++|++||+|..|.|.. ++.++|||||+|.+.++|.+||..|+|..|.|++|.|.|+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 5677899999999999999999999999999999964 5677899999999999999999999999999999999999
Q ss_pred CCCCC
Q 025499 81 HGGSG 85 (252)
Q Consensus 81 ~~~~~ 85 (252)
.+...
T Consensus 150 ~~~~~ 154 (165)
T 1rk8_A 150 FVKGP 154 (165)
T ss_dssp EECC-
T ss_pred cCCCC
Confidence 87643
No 141
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.81 E-value=1e-19 Score=123.83 Aligned_cols=74 Identities=30% Similarity=0.625 Sum_probs=70.0
Q ss_pred CCcEEEEcCCCCC-CCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 025499 5 FSRTIYVGNLPSD-IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (252)
Q Consensus 5 ~~~~l~v~~lp~~-~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (252)
++++|||+|||++ +|+++|+++|++||+|..|.+ +++||||+|.+.++|++|+..|++..|+|+.|.|.++...
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 4589999999999 999999999999999999999 3899999999999999999999999999999999999754
No 142
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=118.65 Aligned_cols=78 Identities=18% Similarity=0.303 Sum_probs=72.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec--CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (252)
.+.++|||+|||+++|+++|+++|+.| .|..|.+.. ++.++|||||+|.+.++|.+|+. |++..|.|+.|.|.++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 578999999999999999999999999 899999965 46778999999999999999999 99999999999999998
Q ss_pred CC
Q 025499 82 GG 83 (252)
Q Consensus 82 ~~ 83 (252)
+.
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 76
No 143
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.81 E-value=3.2e-20 Score=124.13 Aligned_cols=78 Identities=26% Similarity=0.447 Sum_probs=70.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec----CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEe
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI----PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~----~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (252)
.+.++|||+|||.++|+++|+++|+.|| |.+|.+.. ++.++|||||+|.+.++|.+|+ .|+|..|+|+.|.|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 5689999999999999999999999999 99999954 4678999999999999999999 7999999999999999
Q ss_pred cCCC
Q 025499 80 AHGG 83 (252)
Q Consensus 80 ~~~~ 83 (252)
+.+.
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 8765
No 144
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=8.2e-20 Score=122.66 Aligned_cols=81 Identities=21% Similarity=0.295 Sum_probs=71.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecCC
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (252)
..++++|||+|||+++|+++|+++|+.|+.|.-+.-..++.++|||||+|.+.++|.+|+..|++..|.|+.|.|.++.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 91 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 36789999999999999999999999886554443344677889999999999999999999999999999999999987
Q ss_pred C
Q 025499 83 G 83 (252)
Q Consensus 83 ~ 83 (252)
.
T Consensus 92 ~ 92 (102)
T 2fc8_A 92 K 92 (102)
T ss_dssp C
T ss_pred C
Confidence 6
No 145
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.81 E-value=9.4e-20 Score=126.83 Aligned_cols=78 Identities=24% Similarity=0.414 Sum_probs=72.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 025499 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (252)
Q Consensus 5 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (252)
+.++|||+|||.++|+++|+++|++||.|.+|.+.. ++.++|||||+|.+.++|.+|+ .|+|..|.|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 468999999999999999999999999999999954 5788999999999999999999 699999999999999998
Q ss_pred CC
Q 025499 82 GG 83 (252)
Q Consensus 82 ~~ 83 (252)
+.
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 146
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.2e-19 Score=120.85 Aligned_cols=79 Identities=15% Similarity=0.191 Sum_probs=72.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeE-EEEec--CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILD-IELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~-v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
.+.++|||+|||+++|+++|+++|+.||.|.+ |.|.. ++.++|||||+|.+.++|.+||.. ++..++|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 56799999999999999999999999999987 77744 578899999999999999999996 999999999999998
Q ss_pred CCC
Q 025499 81 HGG 83 (252)
Q Consensus 81 ~~~ 83 (252)
...
T Consensus 92 ~~~ 94 (104)
T 1wg5_A 92 SRA 94 (104)
T ss_dssp CTT
T ss_pred CHH
Confidence 654
No 147
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.81 E-value=2.3e-20 Score=122.40 Aligned_cols=76 Identities=32% Similarity=0.576 Sum_probs=69.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 025499 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (252)
Q Consensus 7 ~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (252)
++|||+|||+++|+++|+++|++||+|.+|.+.. ++.++|||||+|.+.+ |.+|+..|+|..++|++|.|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 5899999999999999999999999999999965 3678999999999999 99999999999999999999999876
No 148
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=128.45 Aligned_cols=77 Identities=32% Similarity=0.556 Sum_probs=71.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
.+.++|||+|||+.+|+++|+++|++||+|..|.+.. ++.++|||||+|.+.++|.+|+..|+|..|.|++|.|.+|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 5789999999999999999999999999999999954 4678999999999999999999999999999999999875
No 149
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.81 E-value=2.5e-20 Score=125.01 Aligned_cols=79 Identities=20% Similarity=0.296 Sum_probs=71.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEE--ecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL--KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~--~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (252)
.+.++|||+|||+++|+++|+++|+.||.|..+.+ ..++.++|||||+|.+.++|.+|++ |++..|.|+.|.|.++.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 47889999999999999999999999998887222 2357889999999999999999999 99999999999999998
Q ss_pred CC
Q 025499 82 GG 83 (252)
Q Consensus 82 ~~ 83 (252)
+.
T Consensus 94 ~~ 95 (101)
T 1fj7_A 94 GR 95 (101)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 150
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=3.2e-20 Score=118.06 Aligned_cols=73 Identities=14% Similarity=0.316 Sum_probs=68.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 7 ~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
++|||+|||+++|+++|+++|++||+|.+|.+.. ++.++|||||+|.+.++|.+|+..++ ..++|++|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 5799999999999999999999999999999955 46789999999999999999999888 9999999999986
No 151
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=9.1e-20 Score=124.98 Aligned_cols=78 Identities=26% Similarity=0.420 Sum_probs=72.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 025499 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (252)
Q Consensus 5 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (252)
..++|||+|||.++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+ .|++..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 457999999999999999999999999999999964 3678999999999999999999 799999999999999987
Q ss_pred CC
Q 025499 82 GG 83 (252)
Q Consensus 82 ~~ 83 (252)
+.
T Consensus 103 ~~ 104 (114)
T 2cq4_A 103 AE 104 (114)
T ss_dssp HH
T ss_pred CC
Confidence 54
No 152
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.80 E-value=1.6e-19 Score=129.84 Aligned_cols=78 Identities=42% Similarity=0.733 Sum_probs=73.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (252)
.+.++|||+|||+++|+++|+++|++||.|.+|.+..+ ++|||||+|.+.++|.+|+..|+|..|.|++|.|.++.++
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN--PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS--SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC--CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 56799999999999999999999999999999999765 6899999999999999999999999999999999999765
No 153
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=5.4e-19 Score=113.12 Aligned_cols=74 Identities=26% Similarity=0.367 Sum_probs=67.4
Q ss_pred CCCcE-EEEcCCCCCCCHHH----HHHHHhhc-CceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEE
Q 025499 4 RFSRT-IYVGNLPSDIREYE----VEDLFYKY-GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (252)
Q Consensus 4 ~~~~~-l~v~~lp~~~t~~~----l~~~f~~~-G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 77 (252)
.|+.+ |||+|||..+++++ |.++|++| |+|.+| + .|+|||+|.+.++|.+|++.|+|..+.|++|+|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----t---gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----T---GCSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----C---TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----e---cCEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 57777 99999999999988 56899999 599998 3 399999999999999999999999999999999
Q ss_pred EecCCCC
Q 025499 78 ELAHGGS 84 (252)
Q Consensus 78 ~~~~~~~ 84 (252)
.+++...
T Consensus 79 ~~A~~~s 85 (96)
T 2diu_A 79 SFTPKNR 85 (96)
T ss_dssp ESSCCSC
T ss_pred EecCCCc
Confidence 9998763
No 154
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.8e-19 Score=123.47 Aligned_cols=80 Identities=18% Similarity=0.308 Sum_probs=73.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec--CCCCCeEEEEEECCHHHHHHHHHhcCCccc--------CCe
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNF--------DGC 73 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~--------~g~ 73 (252)
.+.++|||+|||+++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..|+|..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 5779999999999999999999999999999999965 467789999999999999999999999999 688
Q ss_pred eEEEEecCCC
Q 025499 74 RLRVELAHGG 83 (252)
Q Consensus 74 ~i~v~~~~~~ 83 (252)
+|.|.|+.+.
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999999754
No 155
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=5.4e-19 Score=116.78 Aligned_cols=77 Identities=17% Similarity=0.387 Sum_probs=67.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (252)
...++|||+|||+++|+++|+++|++||.|.+|.+.. ...+ ||||+|.+.++|.+|+. |++..|+|+.|.|.++...
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~-~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDK-DKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECS-SSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcC-CCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 5678999999999999999999999999999983322 1112 99999999999999999 9999999999999988655
No 156
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.1e-19 Score=124.34 Aligned_cols=79 Identities=15% Similarity=0.130 Sum_probs=72.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCce-eEEEEec--CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRI-LDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v-~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
.+.++|||+|||+++|+++|+++|+.||.| ..|.|.. ++.++|||||+|.+.++|.+||.. ++..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 578999999999999999999999999999 7888854 577899999999999999999995 999999999999999
Q ss_pred CCC
Q 025499 81 HGG 83 (252)
Q Consensus 81 ~~~ 83 (252)
...
T Consensus 92 ~~~ 94 (114)
T 2cpy_A 92 TLE 94 (114)
T ss_dssp CHH
T ss_pred CHH
Confidence 755
No 157
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.2e-19 Score=117.18 Aligned_cols=76 Identities=25% Similarity=0.478 Sum_probs=70.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (252)
.++++|||+|| ++|+++|+++|++||+|.+|.+. .++|||||+|.+.++|.+|+..|++..|.|++|.|.++.+.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec---CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 57889999996 99999999999999999999985 45899999999999999999999999999999999999876
Q ss_pred C
Q 025499 84 S 84 (252)
Q Consensus 84 ~ 84 (252)
.
T Consensus 88 ~ 88 (97)
T 1x5p_A 88 P 88 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 158
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.80 E-value=1.1e-19 Score=125.18 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=72.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCc---eeEEEEec--CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEE
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGR---ILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~---v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 78 (252)
.+.++|||+|||+++|+++|+++|+.||. |..|.|.. ++.++|||||+|.+.++|++||. |++..|+|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 46789999999999999999999999998 88999854 36789999999999999999999 99999999999999
Q ss_pred ecCCC
Q 025499 79 LAHGG 83 (252)
Q Consensus 79 ~~~~~ 83 (252)
++...
T Consensus 94 ~a~~~ 98 (118)
T 2db1_A 94 KSHRT 98 (118)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98643
No 159
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.80 E-value=1e-18 Score=125.01 Aligned_cols=77 Identities=23% Similarity=0.334 Sum_probs=69.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCC--eeEEEEecCCCC
Q 025499 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVELAHGGS 84 (252)
Q Consensus 7 ~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~~~~~~ 84 (252)
..|||+||++.+|+++|+++|++||+|++|.+.. ..+++||||+|.+.++|.+|+..|+|..|.| ++|+|+|+++..
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~-k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT-KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEE-SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEe-CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 4588999999999999999999999999999853 3357899999999999999999999999965 999999998763
No 160
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.80 E-value=2.9e-19 Score=122.43 Aligned_cols=76 Identities=21% Similarity=0.245 Sum_probs=66.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCee-----EEEE
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR-----LRVE 78 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~-----i~v~ 78 (252)
...++|||+|||+++|+++|+++|++||+|..|.|..+ |||||+|.+.++|++||..||+..|+|+. |.|.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 45689999999999999999999999999999999764 99999999999999999999999999998 7777
Q ss_pred ecCCC
Q 025499 79 LAHGG 83 (252)
Q Consensus 79 ~~~~~ 83 (252)
.+.+.
T Consensus 90 ~~~~~ 94 (115)
T 3beg_B 90 VDGPR 94 (115)
T ss_dssp ECC--
T ss_pred cCCCC
Confidence 66553
No 161
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.79 E-value=1.3e-19 Score=118.27 Aligned_cols=77 Identities=32% Similarity=0.372 Sum_probs=71.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecCC
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (252)
+..+++|||+|||+++|+++|+++|++| +|.++.+. .++|||||+|.+.++|.+|+..|+|..+.|++|.|.++..
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 2 SSGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 3678999999999999999999999999 99999884 5689999999999999999999999999999999999875
Q ss_pred C
Q 025499 83 G 83 (252)
Q Consensus 83 ~ 83 (252)
.
T Consensus 78 ~ 78 (88)
T 1wg1_A 78 D 78 (88)
T ss_dssp C
T ss_pred C
Confidence 5
No 162
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.79 E-value=8.8e-20 Score=115.42 Aligned_cols=72 Identities=22% Similarity=0.503 Sum_probs=66.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 8 ~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
+|||+|||+++|+++|+++|++||+|.+|.+.. ++.++|||||+|.+.++|.+|+. +++..++|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 599999999999999999999999999999854 46789999999999999999999 5899999999999875
No 163
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=4.6e-19 Score=117.62 Aligned_cols=79 Identities=16% Similarity=0.342 Sum_probs=70.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEE-EecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecCC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIE-LKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~-~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (252)
..+++|||+|||+.+|+++|+++|++||.|..|. +..+. ..+.|||+|.+.++|.+|+..|+|..|.|++|.|.++.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~-~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDS-ETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSS-SSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 4578999999999999999999999999999994 65442 345599999999999999999999999999999999987
Q ss_pred C
Q 025499 83 G 83 (252)
Q Consensus 83 ~ 83 (252)
.
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 6
No 164
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.79 E-value=3.6e-19 Score=120.40 Aligned_cols=82 Identities=33% Similarity=0.604 Sum_probs=72.9
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhC-CceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEee
Q 025499 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (252)
Q Consensus 121 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g-~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~ 199 (252)
....++|||+|||+.+++++|+++|++|| .|..+.+......|||||+|.+.++|..||+.|||..+. |+.|.|.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~----Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFR----GSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEET----TEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEE
Confidence 34568999999999999999999999999 899999876566689999999999999999999999999 9999999
Q ss_pred ecCCCCC
Q 025499 200 RYDRSPS 206 (252)
Q Consensus 200 ~~~~~~~ 206 (252)
.+...+.
T Consensus 101 ~a~~~p~ 107 (111)
T 2jvr_A 101 RDDNPPP 107 (111)
T ss_dssp ESCC---
T ss_pred ECCCCCC
Confidence 9885543
No 165
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.79 E-value=4e-19 Score=130.79 Aligned_cols=80 Identities=21% Similarity=0.369 Sum_probs=74.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec--CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (252)
.++++|||+|||+.+|+++|+++|++||+|..|.+.. ++.++|||||+|.+.++|.+|+..|+|..|+|++|.|.++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 5678999999999999999999999999999999955 46789999999999999999999999999999999999997
Q ss_pred CC
Q 025499 82 GG 83 (252)
Q Consensus 82 ~~ 83 (252)
..
T Consensus 166 ~~ 167 (177)
T 2f3j_A 166 SQ 167 (177)
T ss_dssp SG
T ss_pred CC
Confidence 65
No 166
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.79 E-value=2.9e-18 Score=117.59 Aligned_cols=81 Identities=17% Similarity=0.312 Sum_probs=73.4
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCC---CcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEee
Q 025499 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (252)
Q Consensus 123 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~---~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~ 199 (252)
...+|||+|||..+++++|+++|++||.|..|.+..+.. .|||||+|.+.++|..|+..|||..+. |+.|.|.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~----g~~l~V~ 81 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLH----GKAIKVE 81 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCS----SSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC----CEEEEEE
Confidence 457999999999999999999999999999999998762 279999999999999999999999999 9999999
Q ss_pred ecCCCCCC
Q 025499 200 RYDRSPSR 207 (252)
Q Consensus 200 ~~~~~~~r 207 (252)
.+......
T Consensus 82 ~a~~~~~~ 89 (116)
T 2fy1_A 82 QAKKPSFQ 89 (116)
T ss_dssp ECCCSSCS
T ss_pred ECCCCCCC
Confidence 99854433
No 167
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.79 E-value=1.4e-19 Score=126.94 Aligned_cols=79 Identities=15% Similarity=0.167 Sum_probs=72.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCc---eeEEEEecC--CCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEE
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGR---ILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~---v~~v~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 78 (252)
.+.++|||+|||+++|+++|+++|+.||. |.+|.|..+ +.++|||||+|.+.++|++|+. |++..|+|+.|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 46789999999999999999999999999 888988653 6789999999999999999999 99999999999999
Q ss_pred ecCCC
Q 025499 79 LAHGG 83 (252)
Q Consensus 79 ~~~~~ 83 (252)
++...
T Consensus 121 ~a~~~ 125 (136)
T 2hgl_A 121 KSHRT 125 (136)
T ss_dssp ECCHH
T ss_pred ECChH
Confidence 98643
No 168
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.79 E-value=6.6e-19 Score=117.18 Aligned_cols=76 Identities=26% Similarity=0.405 Sum_probs=70.9
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEe
Q 025499 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (252)
Q Consensus 123 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v 198 (252)
.+++|||+|||..+|+++|+++|++||.|..+.+..++.+ |||||+|.+.++|.+|++.|||..+. |+.|.|
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~----gr~l~V 93 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQ----SKTIKV 93 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEEC----CEEEEE
Confidence 3579999999999999999999999999999999987654 59999999999999999999999999 999999
Q ss_pred eecC
Q 025499 199 KRYD 202 (252)
Q Consensus 199 ~~~~ 202 (252)
..++
T Consensus 94 ~~Ak 97 (99)
T 4fxv_A 94 SYAR 97 (99)
T ss_dssp EECC
T ss_pred EEee
Confidence 9875
No 169
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.9e-19 Score=120.54 Aligned_cols=78 Identities=19% Similarity=0.253 Sum_probs=70.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec--CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (252)
.+.++|||+|||+++|+++|+++|+.||.| .|.|.. ++.++|||||+|.+.++|++||. +++..|.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 577899999999999999999999999955 888854 56789999999999999999996 89999999999999987
Q ss_pred CC
Q 025499 82 GG 83 (252)
Q Consensus 82 ~~ 83 (252)
..
T Consensus 91 ~~ 92 (102)
T 1wez_A 91 TA 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 55
No 170
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=9.3e-20 Score=126.75 Aligned_cols=79 Identities=22% Similarity=0.233 Sum_probs=70.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEE-E--ecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIE-L--KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~-~--~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
.+.++|||+|||+++|+++|+++|+.||.|.++. + ..++.++|||||+|.+.++|.+||. |++..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 4668999999999999999999999999997733 3 3467889999999999999999999 9999999999999998
Q ss_pred CCC
Q 025499 81 HGG 83 (252)
Q Consensus 81 ~~~ 83 (252)
...
T Consensus 102 ~~~ 104 (124)
T 1wel_A 102 TKK 104 (124)
T ss_dssp CHH
T ss_pred CHH
Confidence 654
No 171
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.79 E-value=1.8e-18 Score=119.28 Aligned_cols=75 Identities=24% Similarity=0.371 Sum_probs=68.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeE-EEEEECCHHHHHHHHHhcCCcccCC--eeEEEEecCCCC
Q 025499 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCY-CFVEFENARDAEDAIRGRDGYNFDG--CRLRVELAHGGS 84 (252)
Q Consensus 8 ~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~-afV~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~~~~~~ 84 (252)
.|||+||++.+|+++|+++|++||+|.+|.+... .+|| |||+|.+.++|.+|++.|||..|.| +.|+|+|+++..
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~--~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK--NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE--TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred EEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC--CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 4669999999999999999999999999988542 3687 9999999999999999999999988 999999998763
No 172
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.79 E-value=7.2e-19 Score=128.37 Aligned_cols=136 Identities=14% Similarity=0.127 Sum_probs=73.8
Q ss_pred EEECCHHHHHHHHHhcCCcccC--CeeEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEE
Q 025499 50 VEFENARDAEDAIRGRDGYNFD--GCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRV 127 (252)
Q Consensus 50 V~f~~~~~a~~a~~~l~~~~~~--g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (252)
.+|.+.++|..|+..|++.... |+.+...++.... ...+... ..+........+....+.++|
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~---------~~~~~~~------~~s~~~~~~~~~~~~~~~~~l 75 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREA---------IHSYERV------RNEDDDELEPGPQRSVEGWIL 75 (165)
T ss_dssp ----------------------------------------------------------------------CCCCC-CEEE
T ss_pred hhhhccccccccchhhccccccccCCCCCCCcccccc---------ccCcccc------ccCCCCCCCCCCCCCCCCCEE
Confidence 7899999999999988875543 5555444322110 0000000 000000011122334556899
Q ss_pred EEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeecCC
Q 025499 128 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (252)
Q Consensus 128 ~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~~~ 203 (252)
||+|||..+++++|.++|++||.|..|.+..+..+ |||||+|.+.++|..||..|||..|. |+.|.|..+..
T Consensus 76 ~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V~~a~~ 151 (165)
T 1rk8_A 76 FVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM----GQTIQVDWCFV 151 (165)
T ss_dssp EEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEEEESEE
T ss_pred EEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEEC----CEEEEEEEecC
Confidence 99999999999999999999999999999988643 69999999999999999999999999 99999999874
Q ss_pred C
Q 025499 204 S 204 (252)
Q Consensus 204 ~ 204 (252)
.
T Consensus 152 ~ 152 (165)
T 1rk8_A 152 K 152 (165)
T ss_dssp C
T ss_pred C
Confidence 3
No 173
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=7e-19 Score=118.74 Aligned_cols=76 Identities=21% Similarity=0.207 Sum_probs=69.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec--CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecCC
Q 025499 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (252)
Q Consensus 5 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (252)
+.++|||+|||+++|+++|+++|+.| .|.+|.|.. ++.++|||||+|.+.++|.+||. |++..|+|+.|.|..+..
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALK-RNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHH-TTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCc
Confidence 35789999999999999999999999 899999964 46789999999999999999995 999999999999998854
No 174
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.78 E-value=9.4e-19 Score=122.09 Aligned_cols=81 Identities=17% Similarity=0.282 Sum_probs=73.2
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCC----CcEEEEEcCChhHHHHHHHHhcCccccCCCCCc
Q 025499 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (252)
Q Consensus 119 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~ 194 (252)
......++|||+|||..+++++|.++|++||.|..|.++.+.. .+||||+|.+.++|..|+..|||..|. |+
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~ 92 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM----GQ 92 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSS----SS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC----Ce
Confidence 3345568999999999999999999999999999999987753 369999999999999999999999999 99
Q ss_pred eeEeeecCC
Q 025499 195 RITVKRYDR 203 (252)
Q Consensus 195 ~i~v~~~~~ 203 (252)
.|.|..+..
T Consensus 93 ~l~v~~a~~ 101 (126)
T 3ex7_B 93 PISVDWCFV 101 (126)
T ss_dssp BCEEEESEE
T ss_pred EEEEEEecC
Confidence 999999873
No 175
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.78 E-value=9.3e-19 Score=113.96 Aligned_cols=73 Identities=29% Similarity=0.549 Sum_probs=68.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhc----C-------ceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccC
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKY----G-------RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~----G-------~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 71 (252)
+.+.++|||+|||+++|+++|+++|++| | .|.++.+..+ +|||||+|.+.++|.+|+ .|+|..+.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~---kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS---SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC---CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 4688999999999999999999999999 8 8999998754 899999999999999999 89999999
Q ss_pred CeeEEEEe
Q 025499 72 GCRLRVEL 79 (252)
Q Consensus 72 g~~i~v~~ 79 (252)
|+.|.|..
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999974
No 176
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.78 E-value=6.3e-19 Score=114.95 Aligned_cols=74 Identities=22% Similarity=0.460 Sum_probs=62.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCc--ccCCeeEEEEecC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY--NFDGCRLRVELAH 81 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~--~~~g~~i~v~~~~ 81 (252)
.+.++|||+|||+++|+++|+++|++||+|.+|.+..+ ++|||||+|.+.++|++ |++. .+.|+.|.|.++.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~--srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS--CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC--CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 57899999999999999999999999999999999764 79999999999999984 3443 4569999999988
Q ss_pred CC
Q 025499 82 GG 83 (252)
Q Consensus 82 ~~ 83 (252)
++
T Consensus 83 ~k 84 (89)
T 3d2w_A 83 PK 84 (89)
T ss_dssp --
T ss_pred CC
Confidence 65
No 177
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.78 E-value=3.6e-19 Score=136.43 Aligned_cols=78 Identities=14% Similarity=0.178 Sum_probs=71.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcC--ceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEe
Q 025499 5 FSRTIYVGNLPSDIREYEVEDLFYKYG--RILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (252)
Q Consensus 5 ~~~~l~v~~lp~~~t~~~l~~~f~~~G--~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (252)
..++|||+|||+++|+++|+++|++|| .|++|.|+. ++.++|||||+|.+.++|.+||..|++..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999955 567899999999999999999999999999999999999
Q ss_pred cCC
Q 025499 80 AHG 82 (252)
Q Consensus 80 ~~~ 82 (252)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 178
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6e-18 Score=114.88 Aligned_cols=84 Identities=19% Similarity=0.334 Sum_probs=74.6
Q ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCC-CcEEEEEcCChhHHHHHHHHhcCccccCCCCCcee
Q 025499 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (252)
Q Consensus 118 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~-~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i 196 (252)
.......++|||+|||..+++++|+++|++||.|..+.+..+.. .+||||+|.+.++|..|++.||+..+. ++.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l 91 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYD----GYRL 91 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEEC----CeEE
Confidence 34445678999999999999999999999999999999977654 479999999999999999999999999 9999
Q ss_pred EeeecCCCC
Q 025499 197 TVKRYDRSP 205 (252)
Q Consensus 197 ~v~~~~~~~ 205 (252)
.|..++..+
T Consensus 92 ~V~~a~~~~ 100 (109)
T 1x4a_A 92 RVEFPRSGR 100 (109)
T ss_dssp EEECCCCCC
T ss_pred EEEEcccCC
Confidence 999988543
No 179
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.78 E-value=7e-18 Score=115.69 Aligned_cols=83 Identities=23% Similarity=0.290 Sum_probs=74.6
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCCc
Q 025499 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (252)
Q Consensus 119 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~ 194 (252)
......++|||+|||..+++++|+++|+.||.|..+.+..+..+ +||||+|.+.++|..|++.|||..+. ++
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~ 95 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG----MK 95 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET----TE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEEC----CE
Confidence 33445689999999999999999999999999999999988644 59999999999999999999999999 99
Q ss_pred eeEeeecCCCC
Q 025499 195 RITVKRYDRSP 205 (252)
Q Consensus 195 ~i~v~~~~~~~ 205 (252)
.|.|..++...
T Consensus 96 ~l~V~~a~~~~ 106 (115)
T 2cpz_A 96 RLKVQLKRSKN 106 (115)
T ss_dssp ECEEECCCCSC
T ss_pred EEEEEEcCCCC
Confidence 99999988443
No 180
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.78 E-value=4e-19 Score=125.15 Aligned_cols=120 Identities=15% Similarity=0.099 Sum_probs=74.8
Q ss_pred eEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 025499 46 CYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEY 125 (252)
Q Consensus 46 g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (252)
.++|++|.+...+..|+..++|....|+.- +.+ ...++......
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~-----------------------------------~~~~~~~~~~~ 48 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSY-----------------------------------GRPPPDVEGMT 48 (135)
T ss_dssp -------------------------------CCS-----------------------------------CCSCSSGGGCC
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CCc-----------------------------------CCCCCCCCCCC
Confidence 467888888888888888887654444320 000 01123344567
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCC----CcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeec
Q 025499 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (252)
Q Consensus 126 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (252)
+|||+|||..+++++|+++|+.||.|..+.+..+.. .|||||+|.+.++|..|+..|||..+. |+.|.|..+
T Consensus 49 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~----g~~l~V~~a 124 (135)
T 2lea_A 49 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD----GRELRVQMA 124 (135)
T ss_dssp CEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSS----SSCCEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC----CEEEEEEEC
Confidence 999999999999999999999999999999987753 369999999999999999999999999 999999999
Q ss_pred CCCC
Q 025499 202 DRSP 205 (252)
Q Consensus 202 ~~~~ 205 (252)
+..+
T Consensus 125 ~~~~ 128 (135)
T 2lea_A 125 RYGR 128 (135)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8543
No 181
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.78 E-value=2.3e-19 Score=121.37 Aligned_cols=80 Identities=14% Similarity=0.093 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCc---eeEEEEecC--CCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEE
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGR---ILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~---v~~v~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 77 (252)
....++|||+|||+++|+++|+++|+.||. |..|.+..+ +.++|||||+|.+.++|.+||. |++..++|+.|.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 367889999999999999999999999998 899998543 6789999999999999999999 9999999999999
Q ss_pred EecCCC
Q 025499 78 ELAHGG 83 (252)
Q Consensus 78 ~~~~~~ 83 (252)
.++.+.
T Consensus 87 ~~a~~~ 92 (107)
T 2lmi_A 87 YEINNE 92 (107)
T ss_dssp EECCHH
T ss_pred EECCHH
Confidence 998653
No 182
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.8e-19 Score=115.55 Aligned_cols=77 Identities=22% Similarity=0.415 Sum_probs=67.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecCC
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 82 (252)
+.++++|||+|||+++|+++|+++|++||+|.+|.+..+ ++|||||+|.+.++|++|+.. ...+.|++|.|.++.+
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEP 77 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCC
Confidence 468899999999999999999999999999999998654 689999999999999865442 3556999999999887
Q ss_pred C
Q 025499 83 G 83 (252)
Q Consensus 83 ~ 83 (252)
.
T Consensus 78 ~ 78 (88)
T 1wf0_A 78 K 78 (88)
T ss_dssp C
T ss_pred C
Confidence 6
No 183
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=4e-18 Score=117.08 Aligned_cols=78 Identities=19% Similarity=0.202 Sum_probs=69.0
Q ss_pred CCCcE--EEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeE-EEEEECCHHHHHHHHHhcCCcccCC--eeEEEE
Q 025499 4 RFSRT--IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCY-CFVEFENARDAEDAIRGRDGYNFDG--CRLRVE 78 (252)
Q Consensus 4 ~~~~~--l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~-afV~f~~~~~a~~a~~~l~~~~~~g--~~i~v~ 78 (252)
.|+++ |||+||++.+|+++|.++|++||.|++|.+... .|| |||+|.+.++|.+|+..|||..|.| ++|.|.
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~---~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR---NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES---SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 34555 579999999999999999999999999998542 386 9999999999999999999999987 699999
Q ss_pred ecCCCC
Q 025499 79 LAHGGS 84 (252)
Q Consensus 79 ~~~~~~ 84 (252)
++++..
T Consensus 98 ~Ak~~~ 103 (124)
T 2e5i_A 98 YARPTR 103 (124)
T ss_dssp CCSCSC
T ss_pred EecCCc
Confidence 998763
No 184
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.77 E-value=2.9e-19 Score=125.68 Aligned_cols=78 Identities=18% Similarity=0.240 Sum_probs=70.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec--CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (252)
.+.++|||+|||+++|+++|+++|++|| |.+|.|.. ++.++|||||+|.+.++|++|| .+++..|.|+.|.|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 4678999999999999999999999999 66998854 3678999999999999999999 599999999999999987
Q ss_pred CC
Q 025499 82 GG 83 (252)
Q Consensus 82 ~~ 83 (252)
..
T Consensus 122 ~~ 123 (139)
T 2hgn_A 122 TT 123 (139)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 185
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2e-17 Score=111.11 Aligned_cols=83 Identities=11% Similarity=0.138 Sum_probs=75.0
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC--cEEEEEcCChhHHHHHHHHhcCccccCCCCCceeE
Q 025499 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG--TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (252)
Q Consensus 120 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~--~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~ 197 (252)
......+|||+|||..+++++|+++|+.||.|..|.+..+... +||||+|.+.++|..|+..|||..+. |+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~ 86 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKIL----GKEVK 86 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEET----TEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcC----CCeEE
Confidence 3445689999999999999999999999999999999987544 79999999999999999999999999 99999
Q ss_pred eeecCCCCC
Q 025499 198 VKRYDRSPS 206 (252)
Q Consensus 198 v~~~~~~~~ 206 (252)
|..+.....
T Consensus 87 V~~a~~~~~ 95 (103)
T 2cqi_A 87 VNWATTPSS 95 (103)
T ss_dssp EEECCCTTC
T ss_pred EEECCCCcc
Confidence 999985443
No 186
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.3e-19 Score=122.82 Aligned_cols=79 Identities=19% Similarity=0.135 Sum_probs=70.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCce----eEEEEec--CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEE
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRI----LDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v----~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~ 76 (252)
..+.++|||+|||+++|+++|+++|++||+| ..|.|.. ++.++|||||+|.+.++|++||.. ++..|.|+.|.
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 3567899999999999999999999999975 6788754 577899999999999999999995 99999999999
Q ss_pred EEecCC
Q 025499 77 VELAHG 82 (252)
Q Consensus 77 v~~~~~ 82 (252)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 998754
No 187
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=3.2e-20 Score=127.63 Aligned_cols=81 Identities=27% Similarity=0.339 Sum_probs=74.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCceeE--------EEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccC
Q 025499 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILD--------IELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~--------v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 71 (252)
..++++|||+|||+++|+++|+++|++||.|.. |.+.. ++.++|||||+|.+.++|.+|+..|++..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 368899999999999999999999999999998 77754 4678999999999999999999999999999
Q ss_pred CeeEEEEecCCC
Q 025499 72 GCRLRVELAHGG 83 (252)
Q Consensus 72 g~~i~v~~~~~~ 83 (252)
|++|.|.++.+.
T Consensus 84 g~~l~V~~a~~~ 95 (116)
T 2lcw_A 84 GNPIKVSFATRR 95 (116)
Confidence 999999999876
No 188
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.76 E-value=3e-17 Score=112.55 Aligned_cols=85 Identities=22% Similarity=0.327 Sum_probs=75.8
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCCc
Q 025499 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (252)
Q Consensus 119 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~ 194 (252)
.......+|||+|||..+++++|+++|+.||.|..|.+..+..+ +||||+|.+.++|..|+..|||..+. |+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~ 85 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG----GR 85 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET----TE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CE
Confidence 34456689999999999999999999999999999999987543 69999999999999999999999999 99
Q ss_pred eeEeeecCCCCCC
Q 025499 195 RITVKRYDRSPSR 207 (252)
Q Consensus 195 ~i~v~~~~~~~~r 207 (252)
.|.|..+...+..
T Consensus 86 ~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 86 QIRTNWATRKPPA 98 (115)
T ss_dssp ECEEEESSCCCCC
T ss_pred EEEEEEccCCCCC
Confidence 9999999854443
No 189
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.1e-18 Score=112.79 Aligned_cols=76 Identities=11% Similarity=0.095 Sum_probs=69.3
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcC--ccccCCCCCceeEee
Q 025499 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD--TEFRNPWARGRITVK 199 (252)
Q Consensus 122 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g--~~~~~~~~g~~i~v~ 199 (252)
.+..+|||+|||+.+++++|+++|++||.|..|.++.++ |||||+|++.++|..|++.|++ ..+. |+.|.|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~k--GfaFVeF~~~~~A~~Ai~~l~~~~~~l~----Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK--NQAFIEMNTEEAANTMVNYYTSVTPVLR----GQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTT--TEEEEEESSHHHHHHHHHHHTTSCCEET----TEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCC--CEEEEEECCHHHHHHHHHHhccCCceEC----CEEEEEE
Confidence 345899999999999999999999999999999999864 8999999999999999998864 6788 9999999
Q ss_pred ecCC
Q 025499 200 RYDR 203 (252)
Q Consensus 200 ~~~~ 203 (252)
.+..
T Consensus 88 ~A~~ 91 (105)
T 1sjq_A 88 FSNH 91 (105)
T ss_dssp CCSS
T ss_pred EcCC
Confidence 9874
No 190
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.76 E-value=4.9e-18 Score=113.85 Aligned_cols=81 Identities=19% Similarity=0.219 Sum_probs=72.1
Q ss_pred CCCCCcEEEEcCCCC-----CCCHHHHHHHHhhcCceeEEEEecC----CCCCeEEEEEECCHHHHHHHHHhcCCcccCC
Q 025499 2 SGRFSRTIYVGNLPS-----DIREYEVEDLFYKYGRILDIELKIP----PRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (252)
Q Consensus 2 ~~~~~~~l~v~~lp~-----~~t~~~l~~~f~~~G~v~~v~~~~~----~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g 72 (252)
+..|+++|+|.||.. +.++++|+++|++||+|.+|.+..+ +.++|||||+|.+.++|.+|+..|||..++|
T Consensus 4 ~~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 4 GKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp GGSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 357999999999973 3478999999999999999999653 4679999999999999999999999999999
Q ss_pred eeEEEEecCC
Q 025499 73 CRLRVELAHG 82 (252)
Q Consensus 73 ~~i~v~~~~~ 82 (252)
++|.|.++..
T Consensus 84 r~i~v~~a~~ 93 (105)
T 2pe8_A 84 RVVKACFYNL 93 (105)
T ss_dssp EECEEEECCH
T ss_pred cEEEEEEcCH
Confidence 9999999864
No 191
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.76 E-value=1.2e-18 Score=120.35 Aligned_cols=77 Identities=18% Similarity=0.206 Sum_probs=68.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCcee--EEEEec--CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEe
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRIL--DIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~--~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (252)
.+.++|||+|||+++|+++|+++|+.| .|. +|.|.. ++.++|||||+|.+.++|++||. +++..|.|+.|.|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 457899999999999999999999999 566 888854 37789999999999999999999 578999999999998
Q ss_pred cCC
Q 025499 80 AHG 82 (252)
Q Consensus 80 ~~~ 82 (252)
+..
T Consensus 118 a~~ 120 (126)
T 2hgm_A 118 SSQ 120 (126)
T ss_dssp ECH
T ss_pred CCH
Confidence 754
No 192
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.76 E-value=3.2e-18 Score=118.08 Aligned_cols=75 Identities=25% Similarity=0.482 Sum_probs=70.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (252)
.++++|||+|| ++|+++|+++|++||+|.+|.+. .++|||||+|.+.++|.+|+..|+|..|.|++|.|.++.+.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 57899999996 69999999999999999999986 45899999999999999999999999999999999999876
No 193
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.7e-17 Score=110.11 Aligned_cols=80 Identities=19% Similarity=0.242 Sum_probs=71.9
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEee
Q 025499 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (252)
Q Consensus 120 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~ 199 (252)
.....++|||+|||..+++++|+++|+.||.|. +.+..+...+||||+|.+.++|..|+..|||..+. |+.|.|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLG----TDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSS----SSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEEC----CcEEEEE
Confidence 344567999999999999999999999999997 67777777789999999999999999999999999 9999999
Q ss_pred ecCCC
Q 025499 200 RYDRS 204 (252)
Q Consensus 200 ~~~~~ 204 (252)
.+...
T Consensus 90 ~a~~~ 94 (97)
T 2e5j_A 90 LARQQ 94 (97)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 98743
No 194
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.8e-17 Score=110.70 Aligned_cols=82 Identities=21% Similarity=0.359 Sum_probs=74.0
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC---cEEEEEcCChhHHHHHHHHhcCccccCCCCCcee
Q 025499 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (252)
Q Consensus 120 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i 196 (252)
......+|||+|||..+++++|+++|+.||.|..+.+..+... +||||+|.+.++|..|+..|||..+. |+.|
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 88 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIK----ENII 88 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESS----SCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEEC----CEEE
Confidence 3445689999999999999999999999999999999987632 69999999999999999999999999 9999
Q ss_pred EeeecCCCC
Q 025499 197 TVKRYDRSP 205 (252)
Q Consensus 197 ~v~~~~~~~ 205 (252)
.|..+...+
T Consensus 89 ~v~~a~~~~ 97 (100)
T 2do4_A 89 KVAISNSGP 97 (100)
T ss_dssp EEEECCCCS
T ss_pred EEEECCCCC
Confidence 999987543
No 195
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.76 E-value=7.6e-19 Score=117.91 Aligned_cols=78 Identities=24% Similarity=0.477 Sum_probs=72.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec--CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (252)
.++++|||+|||+++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|++|+. ++..++|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 4678999999999999999999999999999999965 46778999999999999999999 8999999999999987
Q ss_pred CC
Q 025499 82 GG 83 (252)
Q Consensus 82 ~~ 83 (252)
..
T Consensus 85 ~~ 86 (102)
T 2xs2_A 85 RK 86 (102)
T ss_dssp EC
T ss_pred cC
Confidence 65
No 196
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.76 E-value=8.2e-18 Score=106.71 Aligned_cols=73 Identities=12% Similarity=0.133 Sum_probs=68.4
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeecC
Q 025499 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (252)
Q Consensus 124 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~~ 202 (252)
..-|+|+||++.+|+++|+++|.+||+|..+++... .|||||+|.+.++|.+|++.||+..+. |+.|+|+.+.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~--kGfaFVey~~~~eA~~Ai~~Ln~~~l~----gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLN--QGIALCKYTTREEANKAQMALNNCVLA----NTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTEEET----TEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCC--CcEEEEEECCHHHHHHHHHHhcCCEEC----CcEEEEEECC
Confidence 458999999999999999999999999999999874 489999999999999999999999999 9999998873
No 197
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.75 E-value=6.8e-18 Score=114.40 Aligned_cols=78 Identities=21% Similarity=0.120 Sum_probs=72.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEe
Q 025499 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (252)
Q Consensus 123 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v 198 (252)
+..+|||+|||+.+++++|+++|++||.|..+.++.+..+ |||||+|++.++|..|++.|||..+. |+.|.|
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~----gr~i~V 80 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVM----GNIIHA 80 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEEC----CeEEEE
Confidence 4579999999999999999999999999999999988764 69999999999999999999999999 999999
Q ss_pred eecCCC
Q 025499 199 KRYDRS 204 (252)
Q Consensus 199 ~~~~~~ 204 (252)
..+...
T Consensus 81 ~~a~~~ 86 (110)
T 3s8s_A 81 QLDIKG 86 (110)
T ss_dssp EECSTT
T ss_pred EECCCC
Confidence 998743
No 198
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.2e-17 Score=112.24 Aligned_cols=83 Identities=17% Similarity=0.183 Sum_probs=74.6
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCCc
Q 025499 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (252)
Q Consensus 119 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~ 194 (252)
+...+..+|||+|||..+++++|+++|+.||.|..+.+..+..+ +||||+|.+.++|..|+..|||..+. |+
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~ 83 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELD----GR 83 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBT----TB
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEEC----Cc
Confidence 34455689999999999999999999999999999999887543 69999999999999999999999999 99
Q ss_pred eeEeeecCCCC
Q 025499 195 RITVKRYDRSP 205 (252)
Q Consensus 195 ~i~v~~~~~~~ 205 (252)
.|.|..+...+
T Consensus 84 ~l~V~~a~~~~ 94 (103)
T 2dnm_A 84 ELRVQVARYGR 94 (103)
T ss_dssp CCEEEECSSCC
T ss_pred EEEEEECCcCC
Confidence 99999998443
No 199
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.1e-17 Score=110.77 Aligned_cols=80 Identities=25% Similarity=0.367 Sum_probs=72.8
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCCceeE
Q 025499 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (252)
Q Consensus 122 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~ 197 (252)
.+..+|||+|||..+++++|+++|+.||.|..+.+..++.+ +||||+|.+.++|..|++.|||..+. ++.|.
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 85 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVD----GRQIR 85 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTT----SCCCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC----CeEEE
Confidence 35579999999999999999999999999999999887543 69999999999999999999999999 99999
Q ss_pred eeecCCCC
Q 025499 198 VKRYDRSP 205 (252)
Q Consensus 198 v~~~~~~~ 205 (252)
|..+....
T Consensus 86 v~~a~~~~ 93 (102)
T 1x5s_A 86 VDQAGKSS 93 (102)
T ss_dssp EEEEECCC
T ss_pred EEECCCCC
Confidence 99988543
No 200
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=4.6e-17 Score=111.41 Aligned_cols=81 Identities=23% Similarity=0.326 Sum_probs=73.6
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC---cEEEEEcCChhHHHHHHHHhcCccccCCCCCceeE
Q 025499 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (252)
Q Consensus 121 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~ 197 (252)
....++|||+|||..+++++|+++|..||.|..+.+..+... +||||+|.+.++|..|+..|||..+. ++.|.
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~ 87 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLF----DRPMH 87 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC----CCEEE
Confidence 345689999999999999999999999999999999987643 69999999999999999999999999 99999
Q ss_pred eeecCCCC
Q 025499 198 VKRYDRSP 205 (252)
Q Consensus 198 v~~~~~~~ 205 (252)
|..+....
T Consensus 88 v~~a~~~~ 95 (114)
T 2do0_A 88 VKMDERAL 95 (114)
T ss_dssp EEECSCCC
T ss_pred EEEcccCC
Confidence 99987443
No 201
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.4e-17 Score=111.85 Aligned_cols=83 Identities=16% Similarity=0.238 Sum_probs=74.9
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCCce
Q 025499 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (252)
Q Consensus 120 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~ 195 (252)
......+|||+|||..+++++|+++|++||.|..|.+..++.+ +||||+|.+.++|..|+..|||..+. |+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 86 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD----HLI 86 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEET----TEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeC----CcE
Confidence 3455689999999999999999999999999999999987643 59999999999999999999999999 999
Q ss_pred eEeeecCCCCC
Q 025499 196 ITVKRYDRSPS 206 (252)
Q Consensus 196 i~v~~~~~~~~ 206 (252)
|.|..+...+.
T Consensus 87 l~v~~a~~~~~ 97 (103)
T 2cq0_A 87 LNVEWAKPSTN 97 (103)
T ss_dssp CEEEESSCCCC
T ss_pred EEEEECCCCCC
Confidence 99999885443
No 202
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=9.6e-18 Score=110.75 Aligned_cols=81 Identities=19% Similarity=0.200 Sum_probs=72.8
Q ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCC
Q 025499 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (252)
Q Consensus 118 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g 193 (252)
.....+.++|||+|||..+++++|+++|++||.|..+.+..++.+ +||||+|.+.++|..|++.|||..+. |
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g 85 (94)
T 2e5h_A 10 GGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF----G 85 (94)
T ss_dssp CSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET----T
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC----C
Confidence 334456689999999999999999999999999999999887553 69999999999999999999999999 9
Q ss_pred ceeEeeecC
Q 025499 194 GRITVKRYD 202 (252)
Q Consensus 194 ~~i~v~~~~ 202 (252)
+.|.|..++
T Consensus 86 ~~l~v~~ak 94 (94)
T 2e5h_A 86 RVIKASIAI 94 (94)
T ss_dssp EEEEEEECC
T ss_pred cEEEEEecC
Confidence 999998764
No 203
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=114.46 Aligned_cols=74 Identities=26% Similarity=0.414 Sum_probs=62.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecC------CCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEE
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP------PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~------~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 77 (252)
.++++|||+|||+++|+++|+++|++||+|. +.+..+ +.++|||||+|.+.++|++|+..|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 6789999999999999999999999999999 666432 5789999999999999999999883 255665555
Q ss_pred Eec
Q 025499 78 ELA 80 (252)
Q Consensus 78 ~~~ 80 (252)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 543
No 204
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.75 E-value=8.3e-18 Score=115.18 Aligned_cols=77 Identities=22% Similarity=0.389 Sum_probs=71.1
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC--cEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeec
Q 025499 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG--TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (252)
Q Consensus 124 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~--~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (252)
..+|||+|||..+++++|+++|+.||.|..|.++.+..+ |||||+|.+.++|..||..|+|..+. |+.|.|..+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~----g~~i~V~~a 80 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN----DRKVFVGRF 80 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEET----TEECEEEES
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEEC----CEEEEEEEC
Confidence 358999999999999999999999999999999987654 69999999999999999999999999 999999988
Q ss_pred CCC
Q 025499 202 DRS 204 (252)
Q Consensus 202 ~~~ 204 (252)
...
T Consensus 81 ~~~ 83 (115)
T 4f25_A 81 KSR 83 (115)
T ss_dssp SCC
T ss_pred CCc
Confidence 743
No 205
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.6e-17 Score=111.55 Aligned_cols=82 Identities=17% Similarity=0.271 Sum_probs=73.6
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeC--CCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeE
Q 025499 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD--SEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (252)
Q Consensus 120 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~--~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~ 197 (252)
.....++|||+|||..+++++|+++|+.||.|..+.+..+ ...+||||+|.+.++|..|+..|||..+. ++.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 86 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA----TKPLY 86 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSS----SSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeC----CcEEE
Confidence 3446689999999999999999999999999999999987 22369999999999999999999999998 99999
Q ss_pred eeecCCCC
Q 025499 198 VKRYDRSP 205 (252)
Q Consensus 198 v~~~~~~~ 205 (252)
|..+....
T Consensus 87 V~~a~~~~ 94 (103)
T 2d9p_A 87 VALAQRKE 94 (103)
T ss_dssp EEECSSCC
T ss_pred EEEecccc
Confidence 99988543
No 206
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.7e-17 Score=109.80 Aligned_cols=83 Identities=22% Similarity=0.268 Sum_probs=74.8
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCC--CcEEEEEcCChhHHHHHHHHhcCccccCCCCCcee
Q 025499 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE--GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (252)
Q Consensus 119 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~--~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i 196 (252)
.......+|||+|||..+++++|+++|+.||.|..|.+..+.. .+||||+|.+.++|..|+..|||..+. |+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 85 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE----GRKI 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC----CEEE
Confidence 3445568999999999999999999999999999999998754 379999999999999999999999999 9999
Q ss_pred EeeecCCCC
Q 025499 197 TVKRYDRSP 205 (252)
Q Consensus 197 ~v~~~~~~~ 205 (252)
.|..+...+
T Consensus 86 ~v~~a~~~~ 94 (103)
T 2cq3_A 86 EVNNATARV 94 (103)
T ss_dssp EEEECCSSC
T ss_pred EEEEcccCC
Confidence 999988543
No 207
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.75 E-value=9.5e-18 Score=110.35 Aligned_cols=76 Identities=16% Similarity=0.184 Sum_probs=69.4
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCcc--ccCCCCCceeEee
Q 025499 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTE--FRNPWARGRITVK 199 (252)
Q Consensus 122 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~--~~~~~~g~~i~v~ 199 (252)
.++.+|||+|||..+++++|.++|++||.|..+.+...+ |+|||+|++.++|..|++.|++.. +. |+.|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~k--g~AFVef~~~~~A~~Av~~ln~~~~~i~----Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKK--RQALVEFEDVLGACNAVNYAADNQIYIA----GHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTT--TEEEEEESSHHHHHHHHHHHHHSCEEET----TEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCC--CEEEEEECCHHHHHHHHHHhcCCCceeC----CcEEEEE
Confidence 456899999999999999999999999999999998654 899999999999999999999886 66 9999999
Q ss_pred ecCC
Q 025499 200 RYDR 203 (252)
Q Consensus 200 ~~~~ 203 (252)
+++.
T Consensus 93 ~S~~ 96 (100)
T 3r27_A 93 YSTS 96 (100)
T ss_dssp ECSC
T ss_pred eccc
Confidence 9873
No 208
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=6.4e-18 Score=112.28 Aligned_cols=77 Identities=10% Similarity=0.063 Sum_probs=69.9
Q ss_pred CCccEEEEeCCCC-CCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCcc--ccCCCCCceeEe
Q 025499 122 HSEYRVIVRGLPS-SASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTE--FRNPWARGRITV 198 (252)
Q Consensus 122 ~~~~~l~v~nl~~-~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~--~~~~~~g~~i~v 198 (252)
.+..+|||+|||+ .+++++|+++|++||.|..|.++.++ +||||+|++.++|..|+..|++.. +. |+.|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k--g~aFVef~~~~~A~~Ai~~l~~~~~~~~----Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI--NEAFIEMATTEDAQAAVDYYTTTPALVF----GKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS--SCEEEEESSHHHHHHHHHHHHHSCCEET----TEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC--CEEEEEECCHHHHHHHHHHHcCCCceEC----CcEEEE
Confidence 3568999999999 99999999999999999999998765 799999999999999999998754 77 999999
Q ss_pred eecCCC
Q 025499 199 KRYDRS 204 (252)
Q Consensus 199 ~~~~~~ 204 (252)
..+...
T Consensus 87 ~~a~~~ 92 (102)
T 1x4d_A 87 HLSQKY 92 (102)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 998843
No 209
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.74 E-value=4.4e-17 Score=109.81 Aligned_cols=82 Identities=18% Similarity=0.219 Sum_probs=73.7
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC---cEEEEEcCChhHHHHHHHHhcCccccCCCCC---ce
Q 025499 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR---GR 195 (252)
Q Consensus 122 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g---~~ 195 (252)
....+|||+|||..+++++|+++|+.||.|..+.+..+... +||||+|.+.++|..|+..|||..+. + +.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----gg~~~~ 88 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTM----PGASSS 88 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCC----TTCSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccC----CCCCcc
Confidence 34689999999999999999999999999999999988643 69999999999999999999999998 6 99
Q ss_pred eEeeecCCCCCC
Q 025499 196 ITVKRYDRSPSR 207 (252)
Q Consensus 196 i~v~~~~~~~~r 207 (252)
|.|..+...+.+
T Consensus 89 l~V~~a~~~~~~ 100 (105)
T 2dnh_A 89 LVVKFADTDKES 100 (105)
T ss_dssp CEEEESCSSCCC
T ss_pred EEEEECccCccc
Confidence 999999854443
No 210
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1e-17 Score=122.25 Aligned_cols=78 Identities=22% Similarity=0.405 Sum_probs=73.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
.++++|||+|||+.+|+++|.++|++||.|..+.+.. ++.++|||||+|.+.++|.+|+..|+|..++|++|.|.|+
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 5688999999999999999999999999999999964 4678899999999999999999999999999999999998
Q ss_pred C
Q 025499 81 H 81 (252)
Q Consensus 81 ~ 81 (252)
.
T Consensus 165 ~ 165 (166)
T 3md3_A 165 A 165 (166)
T ss_dssp C
T ss_pred C
Confidence 5
No 211
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.74 E-value=1.6e-17 Score=109.91 Aligned_cols=81 Identities=23% Similarity=0.366 Sum_probs=72.6
Q ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC---cEEEEEcCChhHHHHHHHHhcCccccCCCCCc
Q 025499 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (252)
Q Consensus 118 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~ 194 (252)
+.......+|||+|||..+++++|+++|++||.|..+.+..+... +||||+|.+.++|..|+..|||..+. |+
T Consensus 10 ~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~ 85 (95)
T 2ywk_A 10 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLY----GR 85 (95)
T ss_dssp --CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEET----TE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC----CC
Confidence 344456789999999999999999999999999999999987653 69999999999999999999999999 99
Q ss_pred eeEeeecC
Q 025499 195 RITVKRYD 202 (252)
Q Consensus 195 ~i~v~~~~ 202 (252)
.|.|..++
T Consensus 86 ~l~V~~a~ 93 (95)
T 2ywk_A 86 PINVSGPS 93 (95)
T ss_dssp ECEEECCC
T ss_pred EEEEEEcC
Confidence 99998875
No 212
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=3.8e-17 Score=108.94 Aligned_cols=81 Identities=21% Similarity=0.222 Sum_probs=73.6
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEe
Q 025499 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (252)
Q Consensus 123 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v 198 (252)
+..+|||+|||..+++++|+++|+.||.|..+.+..+..+ +||||+|.+.++|..|+..|||..+. |+.|.|
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~V 82 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ----GRMLHV 82 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESS----SCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEEC----CcEEEE
Confidence 4589999999999999999999999999999999887633 69999999999999999999999999 999999
Q ss_pred eecCCCCCC
Q 025499 199 KRYDRSPSR 207 (252)
Q Consensus 199 ~~~~~~~~r 207 (252)
..+...+..
T Consensus 83 ~~a~~~~~~ 91 (99)
T 1whw_A 83 LPSTIKKEA 91 (99)
T ss_dssp EECCCCSTT
T ss_pred EEcCCCccc
Confidence 999855443
No 213
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.74 E-value=7.3e-18 Score=128.26 Aligned_cols=79 Identities=25% Similarity=0.344 Sum_probs=73.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec-CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 025499 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI-PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (252)
Q Consensus 5 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~-~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (252)
..++|||+|||+.+|+++|+++|+.||.|..|.+.. .+.++|||||+|.+.++|.+|+..|||..|+|++|.|.++.++
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 467899999999999999999999999999999965 3457899999999999999999999999999999999999765
No 214
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3e-17 Score=108.55 Aligned_cols=80 Identities=21% Similarity=0.269 Sum_probs=73.0
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCCc
Q 025499 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (252)
Q Consensus 119 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~ 194 (252)
....+..+|||+|||..+++++|+++|++||.|..+.+..++.+ +||||+|.+.++|..|+..|||..+. |+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~ 85 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD----GR 85 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET----TE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC----CE
Confidence 33456789999999999999999999999999999999987654 69999999999999999999999999 99
Q ss_pred eeEeeecC
Q 025499 195 RITVKRYD 202 (252)
Q Consensus 195 ~i~v~~~~ 202 (252)
.|.|..++
T Consensus 86 ~l~v~~a~ 93 (95)
T 2cqc_A 86 RIRVSGPS 93 (95)
T ss_dssp EEEEECCS
T ss_pred EEEEEecC
Confidence 99998876
No 215
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.7e-17 Score=108.97 Aligned_cols=80 Identities=20% Similarity=0.206 Sum_probs=72.9
Q ss_pred CCccEEEEeCCCCCCCHHHHH----HHHHHhCCceEEEEeeCCC-CcEEEEEcCChhHHHHHHHHhcCccccCCCCCcee
Q 025499 122 HSEYRVIVRGLPSSASWQDLK----DHMRKAGDVCFAEVSRDSE-GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (252)
Q Consensus 122 ~~~~~l~v~nl~~~~t~~~l~----~~f~~~g~v~~~~~~~~~~-~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i 196 (252)
....+|||+|||..+++++|+ ++|++||.|..+.+..+.. .+||||+|.+.++|..|+..|||..+. |+.|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~----gr~l 82 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIG----SKKI 82 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEET----TEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEEC----CeEE
Confidence 345799999999999999999 9999999999999997754 379999999999999999999999999 9999
Q ss_pred EeeecCCCC
Q 025499 197 TVKRYDRSP 205 (252)
Q Consensus 197 ~v~~~~~~~ 205 (252)
.|..++..+
T Consensus 83 ~V~~a~~~~ 91 (96)
T 2dgx_A 83 LVSLATGAS 91 (96)
T ss_dssp EEEECCCSS
T ss_pred EEEEcCCCC
Confidence 999997443
No 216
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=3.2e-17 Score=109.70 Aligned_cols=76 Identities=22% Similarity=0.346 Sum_probs=71.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeecCCC
Q 025499 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 204 (252)
Q Consensus 125 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~~~~ 204 (252)
++|||+|||..+++++|+++|++||.|..+.+..+ ..+||||+|.+.++|..|+..|||..+. |+.|.|..+...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVIC----GSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSS----SCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeEC----CcEEEEEEccCC
Confidence 48999999999999999999999999999999987 5589999999999999999999999999 999999999854
Q ss_pred C
Q 025499 205 P 205 (252)
Q Consensus 205 ~ 205 (252)
+
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 217
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.74 E-value=5.1e-17 Score=109.69 Aligned_cols=82 Identities=20% Similarity=0.248 Sum_probs=73.3
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCC----CcEEEEEcCChhHHHHHHHHhcCccc---cCCCC
Q 025499 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEF---RNPWA 192 (252)
Q Consensus 120 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~---~~~~~ 192 (252)
......+|||+|||..+++++|+++|++||.|..|.+..++. .+||||+|.+.++|..|+..|||..+ .
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~---- 84 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGM---- 84 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTC----
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCC----
Confidence 344568999999999999999999999999999999988754 36999999999999999999999987 6
Q ss_pred CceeEeeecCCCC
Q 025499 193 RGRITVKRYDRSP 205 (252)
Q Consensus 193 g~~i~v~~~~~~~ 205 (252)
++.|.|..+....
T Consensus 85 g~~l~v~~a~~~~ 97 (106)
T 2dgp_A 85 NRPIQVKPADSES 97 (106)
T ss_dssp SSCCEEEECCCCS
T ss_pred CceEEEEECCccc
Confidence 8999999988543
No 218
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.3e-17 Score=112.34 Aligned_cols=78 Identities=10% Similarity=0.093 Sum_probs=70.6
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcC--ccccCCCCCceeE
Q 025499 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD--TEFRNPWARGRIT 197 (252)
Q Consensus 120 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g--~~~~~~~~g~~i~ 197 (252)
...+..+|||+|||+.+++++|+++|++||.|+.|.++.++ |||||+|++.++|..|+..|++ ..+. |+.|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~k--G~AFVeF~~~e~A~~Ai~~l~~~~~~l~----Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK--NQAFIEMNTEEAANTMVNYYTSVTPVLR----GQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGG--TEEEEECSCHHHHHHHHHHHHHHCCCBT----TBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC--CEEEEEECCHHHHHHHHHHhccCCceEC----CeEEE
Confidence 34556899999999999999999999999999999999864 8999999999999999999985 5788 99999
Q ss_pred eeecCC
Q 025499 198 VKRYDR 203 (252)
Q Consensus 198 v~~~~~ 203 (252)
|..+..
T Consensus 101 V~~a~~ 106 (119)
T 2ad9_A 101 IQFSNH 106 (119)
T ss_dssp EEECSS
T ss_pred EEEccC
Confidence 999874
No 219
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.74 E-value=6.7e-18 Score=110.59 Aligned_cols=77 Identities=16% Similarity=0.323 Sum_probs=68.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHhC-CceEEEEeeCCCC----cEEEEEcCChhHHHHHHHHh-cCccccCCCCCceeEe
Q 025499 125 YRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKL-DDTEFRNPWARGRITV 198 (252)
Q Consensus 125 ~~l~v~nl~~~~t~~~l~~~f~~~g-~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l-~g~~~~~~~~g~~i~v 198 (252)
.+|||+|||..+|+++|+++|++|| .|..|.++.++.+ |||||+|.+.++|.+|++.+ ++..+. |+.|.|
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~----gr~i~V 77 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNIL----GQKVSM 77 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEET----TEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEEC----CEEEEE
Confidence 5899999999999999999999999 8999999877543 69999999999999999987 456788 999999
Q ss_pred eecCCCC
Q 025499 199 KRYDRSP 205 (252)
Q Consensus 199 ~~~~~~~ 205 (252)
..+...+
T Consensus 78 ~~a~~~~ 84 (91)
T 2lxi_A 78 HYSDPKP 84 (91)
T ss_dssp ECCCSCC
T ss_pred EEcCCCC
Confidence 9987443
No 220
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.9e-17 Score=109.59 Aligned_cols=81 Identities=27% Similarity=0.375 Sum_probs=73.7
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCCce
Q 025499 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (252)
Q Consensus 120 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~ 195 (252)
......+|||+|||..+++++|+++|++||.|..+.+..+..+ +||||+|.+.++|..|+..|||..+. |+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 86 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLY----GKP 86 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCS----SCB
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeEC----CeE
Confidence 3445689999999999999999999999999999999887643 69999999999999999999999999 999
Q ss_pred eEeeecCCC
Q 025499 196 ITVKRYDRS 204 (252)
Q Consensus 196 i~v~~~~~~ 204 (252)
|.|..+...
T Consensus 87 l~v~~a~~~ 95 (105)
T 1x5u_A 87 IRVNKASAH 95 (105)
T ss_dssp CEEEETTTT
T ss_pred EEEEECCCC
Confidence 999998843
No 221
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=4.2e-17 Score=107.85 Aligned_cols=80 Identities=16% Similarity=0.233 Sum_probs=73.1
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEe
Q 025499 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (252)
Q Consensus 123 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v 198 (252)
+.++|||+|||..+++++|+++|++||.|..+.+..+..+ +||||+|.+.++|..|+..|||..+. |+.|.|
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~V 79 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELA----GRPMRV 79 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSS----SSCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeC----CcEEEE
Confidence 4579999999999999999999999999999999987643 69999999999999999999999999 999999
Q ss_pred eecCCCCC
Q 025499 199 KRYDRSPS 206 (252)
Q Consensus 199 ~~~~~~~~ 206 (252)
..+.....
T Consensus 80 ~~a~~~~~ 87 (95)
T 2dnz_A 80 GHVTERLD 87 (95)
T ss_dssp EESSCCCC
T ss_pred EEcccccC
Confidence 99985443
No 222
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.74 E-value=1.8e-17 Score=107.81 Aligned_cols=79 Identities=22% Similarity=0.285 Sum_probs=70.5
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCCceeE
Q 025499 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (252)
Q Consensus 122 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~ 197 (252)
.+..+|||+|||..+++++|+++|+.||.|..+.+..+..+ |||||+|.+.++|..|+..|||..+. |+.|.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 79 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG----GRQIR 79 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC----CeEEE
Confidence 34679999999999999999999999999999999987543 69999999999999999999999999 99999
Q ss_pred eeecCCC
Q 025499 198 VKRYDRS 204 (252)
Q Consensus 198 v~~~~~~ 204 (252)
|..+...
T Consensus 80 v~~a~~k 86 (87)
T 3bs9_A 80 TNWATRK 86 (87)
T ss_dssp EEEEC--
T ss_pred EEecCCC
Confidence 9988743
No 223
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=5.6e-17 Score=109.72 Aligned_cols=85 Identities=18% Similarity=0.373 Sum_probs=75.0
Q ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeC-CC----CcEEEEEcCChhHHHHHHHHh-cCccccCCC
Q 025499 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD-SE----GTYGVVDYTNPEDMKYAIRKL-DDTEFRNPW 191 (252)
Q Consensus 118 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~-~~----~~~afv~f~~~~~a~~a~~~l-~g~~~~~~~ 191 (252)
.......++|||+|||..+++++|+++|+.||.|..|.+..+ .. .+||||+|.+.++|..|+..| |+..+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~--- 85 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY--- 85 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS---
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC---
Confidence 344456789999999999999999999999999999999877 22 379999999999999999999 999999
Q ss_pred CCceeEeeecCCCCC
Q 025499 192 ARGRITVKRYDRSPS 206 (252)
Q Consensus 192 ~g~~i~v~~~~~~~~ 206 (252)
|+.|.|..+.....
T Consensus 86 -g~~l~v~~a~~~~~ 99 (107)
T 2cph_A 86 -GRRLVLEWADSEVT 99 (107)
T ss_dssp -SCBCEEEECCCCCC
T ss_pred -CCEEEEEeCCCCCC
Confidence 99999999985443
No 224
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.73 E-value=1.6e-17 Score=126.55 Aligned_cols=80 Identities=26% Similarity=0.474 Sum_probs=74.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
.+.++|||+|||.++|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|.+|+..|+|..|+|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 4678999999999999999999999999999999965 4677899999999999999999999999999999999999
Q ss_pred CCC
Q 025499 81 HGG 83 (252)
Q Consensus 81 ~~~ 83 (252)
.+.
T Consensus 203 ~~~ 205 (216)
T 2qfj_A 203 VTP 205 (216)
T ss_dssp SSC
T ss_pred cCC
Confidence 876
No 225
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=4.5e-17 Score=108.54 Aligned_cols=81 Identities=19% Similarity=0.366 Sum_probs=72.7
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCC----CcEEEEEcCChhHHHHHHHHhcCccccCCCCCcee
Q 025499 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (252)
Q Consensus 121 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i 196 (252)
.....+|||+|||..+++++|+++|+.||.|..+.+..++. .+||||+|.+.++|..|++ |++..+. |+.|
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~----g~~l 81 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIM----GKKV 81 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSS----SCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEEC----CeEE
Confidence 34568999999999999999999999999999999988754 3699999999999999999 9999999 9999
Q ss_pred EeeecCCCCC
Q 025499 197 TVKRYDRSPS 206 (252)
Q Consensus 197 ~v~~~~~~~~ 206 (252)
.|..+.....
T Consensus 82 ~V~~a~~~~~ 91 (99)
T 2dgs_A 82 EVKRAEPRDS 91 (99)
T ss_dssp EEEECCCCCC
T ss_pred EEEECCCCcc
Confidence 9999885433
No 226
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=5.9e-17 Score=110.33 Aligned_cols=84 Identities=11% Similarity=0.162 Sum_probs=74.7
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCC----CcEEEEEcCChhHHHHHHHHhc------Ccccc
Q 025499 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLD------DTEFR 188 (252)
Q Consensus 119 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~------g~~~~ 188 (252)
....+..+|||+|||..+++++|+++|+.||.|..|.+..+.. .+||||+|.+.++|..|+..|| +..+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 3345568999999999999999999999999999999998754 3699999999999999999999 99999
Q ss_pred CCCCCceeEeeecCCCCC
Q 025499 189 NPWARGRITVKRYDRSPS 206 (252)
Q Consensus 189 ~~~~g~~i~v~~~~~~~~ 206 (252)
|+.|.|..+.....
T Consensus 90 ----g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 90 ----GRQLKVDLAVTRDE 103 (111)
T ss_dssp ----SCEEEEECCCCCCC
T ss_pred ----CEEEEEEECCCCcc
Confidence 99999999885433
No 227
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=4.7e-17 Score=108.87 Aligned_cols=77 Identities=19% Similarity=0.220 Sum_probs=69.1
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCcc--ccCCCCCceeEe
Q 025499 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTE--FRNPWARGRITV 198 (252)
Q Consensus 121 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~--~~~~~~g~~i~v 198 (252)
..+..+|||+|||+.+++++|+++|++||.|..+.+..++ +||||+|++.++|..|+..|++.. +. |+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~k--g~aFVef~~~~~A~~Ai~~l~~~~~~i~----Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFK--RQALVEFENIDSAKECVTFAADVPVYIA----GQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTT--TEEEEEESSHHHHHHHHHHHHHSCCBSS----SSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCC--CEEEEEECCHHHHHHHHHHhccCCceEC----CEEEEE
Confidence 3456899999999999999999999999999999988754 899999999999999999997654 77 999999
Q ss_pred eecCC
Q 025499 199 KRYDR 203 (252)
Q Consensus 199 ~~~~~ 203 (252)
.++..
T Consensus 86 ~~a~~ 90 (104)
T 1wex_A 86 NYSTS 90 (104)
T ss_dssp EECSS
T ss_pred EEccC
Confidence 99874
No 228
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.6e-17 Score=110.35 Aligned_cols=81 Identities=20% Similarity=0.239 Sum_probs=73.2
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCC----CcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeE
Q 025499 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (252)
Q Consensus 122 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~ 197 (252)
.+..+|||+|||..+++++|+++|+.||.|..+.+..+.. .+||||+|.+.++|..|++.|||..+. |+.|.
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 85 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF----GRTIR 85 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEET----TEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CcEEE
Confidence 3568999999999999999999999999999999987744 369999999999999999999999999 99999
Q ss_pred eeecCCCCC
Q 025499 198 VKRYDRSPS 206 (252)
Q Consensus 198 v~~~~~~~~ 206 (252)
|..+...+.
T Consensus 86 V~~a~~~~~ 94 (102)
T 2cqb_A 86 VNLAKPMRI 94 (102)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999885433
No 229
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.7e-17 Score=109.06 Aligned_cols=80 Identities=16% Similarity=0.215 Sum_probs=72.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCceEE-EEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCCceeE
Q 025499 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA-EVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (252)
Q Consensus 123 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~-~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~ 197 (252)
+.++|||+|||..+++++|.++|+.||.|..+ .+..++.+ +||||+|.+.++|..|+..|||..+. |+.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 79 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC----NRPIT 79 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEET----TEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC----CEEEE
Confidence 45799999999999999999999999999999 88887433 69999999999999999999999999 99999
Q ss_pred eeecCCCCC
Q 025499 198 VKRYDRSPS 206 (252)
Q Consensus 198 v~~~~~~~~ 206 (252)
|..+...+.
T Consensus 80 v~~a~~~~~ 88 (96)
T 1x5t_A 80 VSYAFKKDS 88 (96)
T ss_dssp EEESCCCCC
T ss_pred EEEecccCC
Confidence 999985443
No 230
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.8e-17 Score=111.68 Aligned_cols=77 Identities=13% Similarity=0.078 Sum_probs=69.0
Q ss_pred CCCccEEEEeCCCCC-CCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcC--ccccCCCCCceeE
Q 025499 121 RHSEYRVIVRGLPSS-ASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD--TEFRNPWARGRIT 197 (252)
Q Consensus 121 ~~~~~~l~v~nl~~~-~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g--~~~~~~~~g~~i~ 197 (252)
..+..+|||+|||+. +++++|+++|++||.|..|.+...+ +||||+|++.++|..|++.|++ ..+. |+.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~k--g~aFVef~~~~~A~~Ai~~l~~~~~~l~----Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMK--SQAFIEMETREDAMAMVDHCLKKALWFQ----GRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTT--TEEEEECSSHHHHHHHHHHHHHSCCCSS----SSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCC--CEEEEEECCHHHHHHHHHHhccCCceEC----CEEEE
Confidence 456789999999998 9999999999999999999998654 8999999999999999999875 4577 99999
Q ss_pred eeecCC
Q 025499 198 VKRYDR 203 (252)
Q Consensus 198 v~~~~~ 203 (252)
|..+..
T Consensus 96 V~~a~~ 101 (112)
T 1x4f_A 96 VDLSEK 101 (112)
T ss_dssp EEEECS
T ss_pred EEECcc
Confidence 999874
No 231
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=6.3e-17 Score=105.87 Aligned_cols=77 Identities=19% Similarity=0.327 Sum_probs=70.8
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeec
Q 025499 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (252)
Q Consensus 122 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (252)
.+.++|||+|||..+++++|+++|++||.|..+.+. .+||||+|.+.++|..|+..|||..+. ++.|.|..+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLH----GVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCS----SCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccC----CcEEEEEEC
Confidence 356899999999999999999999999999999998 379999999999999999999999999 999999998
Q ss_pred CCCCC
Q 025499 202 DRSPS 206 (252)
Q Consensus 202 ~~~~~ 206 (252)
...+.
T Consensus 78 ~~~~~ 82 (90)
T 2dnq_A 78 KNKSK 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 85443
No 232
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.73 E-value=7.7e-18 Score=128.41 Aligned_cols=77 Identities=25% Similarity=0.349 Sum_probs=70.9
Q ss_pred CCCcEEEEcCCCCCC---------CHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCccc----
Q 025499 4 RFSRTIYVGNLPSDI---------REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF---- 70 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~---------t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~---- 70 (252)
.++++|||+|||..+ ++++|+++|++||+|++|.|... +|||||+|.+.++|+.|++.|+|..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~---kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES---KNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG---GTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC---CCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 568999999999998 79999999999999999999753 89999999999999999999999999
Q ss_pred --------CCeeEEEEecCCC
Q 025499 71 --------DGCRLRVELAHGG 83 (252)
Q Consensus 71 --------~g~~i~v~~~~~~ 83 (252)
.|+.|.|.|+...
T Consensus 209 ~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 209 DKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp STTGGGGGGSCCCEEEECC--
T ss_pred cccccccCCCCEEEEEEccCC
Confidence 8999999999866
No 233
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.6e-17 Score=110.02 Aligned_cols=84 Identities=15% Similarity=0.398 Sum_probs=74.0
Q ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCC-----CcEEEEEcCChhHHHHHHHHhcCccccCCCC
Q 025499 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWA 192 (252)
Q Consensus 118 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~-----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~ 192 (252)
..+..+.++|||+|||..+++++|+++|+.|| |..|.+..+.. .+||||+|.+.++|..|+ .||+..+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~---- 82 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG---- 82 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEET----
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeC----
Confidence 33445668999999999999999999999999 99999988764 369999999999999999 99999999
Q ss_pred CceeEeeecCCCCCC
Q 025499 193 RGRITVKRYDRSPSR 207 (252)
Q Consensus 193 g~~i~v~~~~~~~~r 207 (252)
++.|.|..+.....+
T Consensus 83 g~~l~V~~a~~~~~~ 97 (104)
T 1wi8_A 83 NKRIRVDVADQAQDK 97 (104)
T ss_dssp TEECEEEECCCCCCC
T ss_pred CcEEEEEEccCCCCC
Confidence 999999999854443
No 234
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.73 E-value=2.5e-17 Score=107.39 Aligned_cols=77 Identities=14% Similarity=0.302 Sum_probs=71.2
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCC-----CCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEe
Q 025499 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS-----EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (252)
Q Consensus 124 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~-----~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v 198 (252)
.++|||+|||..+++++|.++|++||.|..+.+..+. ..|||||+|.+.++|..|+..|||..+. |+.|.|
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v 79 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID----GQEITA 79 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEET----TEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeEC----CeEEEE
Confidence 4799999999999999999999999999999998776 3479999999999999999999999999 999999
Q ss_pred eecCCC
Q 025499 199 KRYDRS 204 (252)
Q Consensus 199 ~~~~~~ 204 (252)
..+...
T Consensus 80 ~~a~~~ 85 (88)
T 4a8x_A 80 TAVLAP 85 (88)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 988743
No 235
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.4e-17 Score=107.55 Aligned_cols=78 Identities=10% Similarity=0.101 Sum_probs=69.8
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhc--CccccCCCCCceeE
Q 025499 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLD--DTEFRNPWARGRIT 197 (252)
Q Consensus 120 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~--g~~~~~~~~g~~i~ 197 (252)
...+..+|||+|||+.+++++|+++|++||.|..+.+..+ .|||||+|++.++|..|+..|+ +..+. |+.|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~----Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYYSAVTPHLR----NQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCEET----TEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceEC----CcEEE
Confidence 3345689999999999999999999999999999988876 4899999999999999999875 56788 99999
Q ss_pred eeecCC
Q 025499 198 VKRYDR 203 (252)
Q Consensus 198 v~~~~~ 203 (252)
|.++..
T Consensus 85 V~~a~~ 90 (101)
T 2cq1_A 85 IQYSNH 90 (101)
T ss_dssp EEECSC
T ss_pred EEEcCc
Confidence 999884
No 236
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=9.7e-17 Score=105.42 Aligned_cols=77 Identities=26% Similarity=0.400 Sum_probs=70.9
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeee
Q 025499 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (252)
Q Consensus 121 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~ 200 (252)
....++|||+|||..+++++|+++|++||.|..+.+..+ ||||+|.+.++|..|+..|||..+. |+.|.|..
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQ----GKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS----EEEEEESCHHHHHHHHHHHTTEEET----TEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC----EEEEEECCHHHHHHHHHHhCCCeeC----CcEEEEEE
Confidence 445689999999999999999999999999999999854 9999999999999999999999999 99999999
Q ss_pred cCCCC
Q 025499 201 YDRSP 205 (252)
Q Consensus 201 ~~~~~ 205 (252)
+...+
T Consensus 79 a~~~~ 83 (92)
T 2dgt_A 79 STSRL 83 (92)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 98443
No 237
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.72 E-value=3e-17 Score=106.26 Aligned_cols=77 Identities=21% Similarity=0.272 Sum_probs=70.2
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCCceeE
Q 025499 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (252)
Q Consensus 122 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~ 197 (252)
.+..+|||+|||..+++++|+++|++||.|..+.+..+..+ +||||+|.+.++|..|+..|||..+. |+.|.
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~ 80 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF----GRTIR 80 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET----TEECE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEEC----CcEEE
Confidence 35589999999999999999999999999999999877433 69999999999999999999999999 99999
Q ss_pred eeecC
Q 025499 198 VKRYD 202 (252)
Q Consensus 198 v~~~~ 202 (252)
|..++
T Consensus 81 v~~ak 85 (85)
T 3mdf_A 81 VNLAK 85 (85)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 98764
No 238
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.72 E-value=9.4e-18 Score=122.73 Aligned_cols=78 Identities=22% Similarity=0.472 Sum_probs=72.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 025499 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (252)
Q Consensus 5 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (252)
++++|||+|||+++|+++|.++|++||.|..+.+.. ++.++|||||+|.+.++|.+|++ +++..++|++|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 467999999999999999999999999999999954 47889999999999999999999 89999999999999997
Q ss_pred CC
Q 025499 82 GG 83 (252)
Q Consensus 82 ~~ 83 (252)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 239
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.72 E-value=1.3e-17 Score=123.05 Aligned_cols=78 Identities=23% Similarity=0.351 Sum_probs=73.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (252)
.+.++|||+|||+.+|+++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..|+|..|.|++|.|.++.++
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 467899999999999999999999999999887 567888999999999999999999999999999999999999865
No 240
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.72 E-value=7.1e-17 Score=107.59 Aligned_cols=81 Identities=22% Similarity=0.302 Sum_probs=72.8
Q ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceE--------EEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCc
Q 025499 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF--------AEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDT 185 (252)
Q Consensus 118 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~--------~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~ 185 (252)
..+.....+|||+|||..+++++|+++|++||.|.. +.+..++.+ |||||+|.+.++|..|++.|||.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 344556789999999999999999999999999999 999887653 69999999999999999999999
Q ss_pred cccCCCCCceeEeeecC
Q 025499 186 EFRNPWARGRITVKRYD 202 (252)
Q Consensus 186 ~~~~~~~g~~i~v~~~~ 202 (252)
.+. |+.|+|..+.
T Consensus 87 ~~~----g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFS----GNPIKVSFAT 99 (99)
T ss_dssp BSS----SSBCEEEECC
T ss_pred EeC----CcEEEEEecC
Confidence 999 9999998763
No 241
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.72 E-value=1.5e-16 Score=106.72 Aligned_cols=76 Identities=11% Similarity=0.202 Sum_probs=70.0
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeecC
Q 025499 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (252)
Q Consensus 123 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~~ 202 (252)
+.++|||+|||..+++++|+++|++||.|..+.+.. +||||+|.+.++|..|+..|||..+. ++.|.|..+.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a~ 81 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK----DYAFIHFDERDGAVKAMEEMNGKDLE----GENIEIVFAK 81 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS----SCEEEEESSHHHHHHHHHHHTTEEET----TEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC----CEEEEEeCCHHHHHHHHHHHCCCccC----CCEEEEEEcC
Confidence 457999999999999999999999999999999884 49999999999999999999999999 9999999998
Q ss_pred CCCC
Q 025499 203 RSPS 206 (252)
Q Consensus 203 ~~~~ 206 (252)
....
T Consensus 82 ~~~~ 85 (103)
T 2dgu_A 82 PPDQ 85 (103)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 5443
No 242
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=7.9e-17 Score=108.17 Aligned_cols=81 Identities=15% Similarity=0.276 Sum_probs=72.6
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCCc
Q 025499 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (252)
Q Consensus 119 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~ 194 (252)
.+..+.++|||+|||..+++++|+++|+.|| |..|.++.+..+ |||||+|.+.++|..|+ .|||..+. |+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~----g~ 83 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLG----DR 83 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEET----TE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeEC----Ce
Confidence 3445568999999999999999999999997 999999988753 69999999999999999 89999999 99
Q ss_pred eeEeeecCCCC
Q 025499 195 RITVKRYDRSP 205 (252)
Q Consensus 195 ~i~v~~~~~~~ 205 (252)
.|.|..+...+
T Consensus 84 ~l~V~~a~~~~ 94 (103)
T 2dng_A 84 SLRVDIAEGRK 94 (103)
T ss_dssp ECEEEECCCCC
T ss_pred EEEEEEecCCC
Confidence 99999988543
No 243
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=7.5e-17 Score=105.52 Aligned_cols=76 Identities=24% Similarity=0.424 Sum_probs=70.3
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeec
Q 025499 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (252)
Q Consensus 122 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (252)
....+|||+|||..+++++|+++|++||.|..+.+..+ ||||+|.+.++|..|+..|||..+. |+.|.|..+
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD----YAFVHMEKEADAKAAIAQLNGKEVK----GKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS----CEEEEESCHHHHHHHHHHHTTCEET----TEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC----EEEEEECCHHHHHHHHHHhCCCEEC----CcEEEEEEC
Confidence 35579999999999999999999999999999999854 9999999999999999999999999 999999999
Q ss_pred CCCC
Q 025499 202 DRSP 205 (252)
Q Consensus 202 ~~~~ 205 (252)
...+
T Consensus 79 ~~~~ 82 (90)
T 2dnp_A 79 TKGQ 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8543
No 244
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.72 E-value=1.9e-16 Score=107.54 Aligned_cols=74 Identities=18% Similarity=0.247 Sum_probs=68.7
Q ss_pred CCccEEEEeCCCCC-CCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeee
Q 025499 122 HSEYRVIVRGLPSS-ASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (252)
Q Consensus 122 ~~~~~l~v~nl~~~-~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~ 200 (252)
...++|||+|||.. +++++|+++|++||.|..|.+ ..+||||+|.+.++|..|+..|||..+. |+.|.|..
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLA----GQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEET----TEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEE
Confidence 34579999999999 999999999999999999998 2379999999999999999999999999 99999999
Q ss_pred cCC
Q 025499 201 YDR 203 (252)
Q Consensus 201 ~~~ 203 (252)
+..
T Consensus 97 a~~ 99 (110)
T 1wf1_A 97 AGE 99 (110)
T ss_dssp SCC
T ss_pred CCC
Confidence 874
No 245
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.2e-16 Score=107.51 Aligned_cols=80 Identities=19% Similarity=0.203 Sum_probs=72.5
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHH-hCCceEEEEeeCCCC---cEEEEEcCChhHHHHHHHHhcCcc-ccCCCCCcee
Q 025499 122 HSEYRVIVRGLPSSASWQDLKDHMRK-AGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTE-FRNPWARGRI 196 (252)
Q Consensus 122 ~~~~~l~v~nl~~~~t~~~l~~~f~~-~g~v~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~-~~~~~~g~~i 196 (252)
.+.++|||+|||..+++++|+++|+. ||.|..+.+..+..+ +||||+|.+.++|..|+..|+|.. +. |+.|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~----g~~l 82 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLG----SKPV 82 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSS----SSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccC----CEeE
Confidence 45689999999999999999999999 999999999987632 699999999999999999999999 98 9999
Q ss_pred EeeecCCCC
Q 025499 197 TVKRYDRSP 205 (252)
Q Consensus 197 ~v~~~~~~~ 205 (252)
.|..+....
T Consensus 83 ~v~~a~~~~ 91 (104)
T 2dhg_A 83 RLSVAIPKA 91 (104)
T ss_dssp CCCBCCCCC
T ss_pred EEEEccCCC
Confidence 999987443
No 246
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1e-16 Score=108.75 Aligned_cols=79 Identities=18% Similarity=0.213 Sum_probs=72.9
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeec
Q 025499 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (252)
Q Consensus 122 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (252)
...++|||+|||..+++++|+++|+.||.|..|.+..+ .+||||+|.+.++|..|+..|+|..+. |+.|.|..+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIE----GHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEET----TEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEEC----CcEEEEEec
Confidence 45679999999999999999999999999999999987 489999999999999999999999999 999999998
Q ss_pred CCCCC
Q 025499 202 DRSPS 206 (252)
Q Consensus 202 ~~~~~ 206 (252)
+..+.
T Consensus 97 ~~~~~ 101 (109)
T 1x4g_A 97 KESPD 101 (109)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 85443
No 247
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.72 E-value=2.8e-16 Score=111.39 Aligned_cols=84 Identities=17% Similarity=0.236 Sum_probs=75.3
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCCc
Q 025499 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (252)
Q Consensus 119 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~ 194 (252)
.......+|||+|||..+++++|+++|+.||.|..|.+..++.+ |||||+|.+.++|..|+..|||..+. |+
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~ 112 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL----NK 112 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECS----SC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----Ce
Confidence 33455689999999999999999999999999999999988653 69999999999999999999999999 99
Q ss_pred eeEeeecCCCCC
Q 025499 195 RITVKRYDRSPS 206 (252)
Q Consensus 195 ~i~v~~~~~~~~ 206 (252)
.|.|..++....
T Consensus 113 ~l~v~~a~~~~~ 124 (139)
T 1u6f_A 113 RLKVALAASGHQ 124 (139)
T ss_dssp EEEEEESSCCCC
T ss_pred EEEEEECCCCCC
Confidence 999999985443
No 248
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.3e-16 Score=105.86 Aligned_cols=80 Identities=16% Similarity=0.282 Sum_probs=71.1
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeec
Q 025499 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (252)
Q Consensus 122 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (252)
.+.++|||+|||..+++++|+++|++||.|..+.+..+ .+||||+|.+.++|..|++.|||..+.+ .++.|.|..+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~--~g~~l~V~~a 90 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPLGG--PDRRLRVDFA 90 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBCSS--SSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEeCC--CCcEEEEEEC
Confidence 34579999999999999999999999999999999876 4799999999999999999999999862 2688999998
Q ss_pred CCCC
Q 025499 202 DRSP 205 (252)
Q Consensus 202 ~~~~ 205 (252)
...+
T Consensus 91 ~~~~ 94 (97)
T 1why_A 91 KSGP 94 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8543
No 249
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.72 E-value=8.6e-17 Score=105.71 Aligned_cols=79 Identities=25% Similarity=0.487 Sum_probs=71.6
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCC--CcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEee
Q 025499 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE--GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (252)
Q Consensus 122 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~--~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~ 199 (252)
.+.++|||+|||..+++++|+++|++||.|..+.+..+.. .+||||+|.+.++|..|+..|||..+. |+.|.|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~----g~~l~v~ 81 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLS----GREIDVR 81 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBT----TBCCCCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CcEEEEE
Confidence 4568999999999999999999999999999999987532 269999999999999999999999999 9999999
Q ss_pred ecCCC
Q 025499 200 RYDRS 204 (252)
Q Consensus 200 ~~~~~ 204 (252)
.++..
T Consensus 82 ~a~~~ 86 (92)
T 2dgv_A 82 IDRNA 86 (92)
T ss_dssp ECSCC
T ss_pred EcCCC
Confidence 98743
No 250
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=5.1e-17 Score=108.09 Aligned_cols=79 Identities=20% Similarity=0.391 Sum_probs=72.0
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCC-------CcEEEEEcCChhHHHHHHHHhcCccccCCCCCce
Q 025499 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-------GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (252)
Q Consensus 123 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~-------~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~ 195 (252)
+.++|||+|||..+++++|+++|+.||.|..+.+..+.. .+||||+|.+.++|..|+..|||..+. |+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 79 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD----GHK 79 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET----TEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC----CeE
Confidence 457999999999999999999999999999999987654 269999999999999999999999999 999
Q ss_pred eEeeecCCCC
Q 025499 196 ITVKRYDRSP 205 (252)
Q Consensus 196 i~v~~~~~~~ 205 (252)
|.|..+....
T Consensus 80 l~V~~a~~~~ 89 (98)
T 2cpf_A 80 LEVRISERAT 89 (98)
T ss_dssp CEEECSSCSS
T ss_pred EEEEEccCCC
Confidence 9999988533
No 251
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.72 E-value=9.9e-18 Score=113.44 Aligned_cols=76 Identities=24% Similarity=0.352 Sum_probs=67.2
Q ss_pred cEEEEcCC----CCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECC----HHH----HHHHHH--hcCCcc
Q 025499 7 RTIYVGNL----PSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFEN----ARD----AEDAIR--GRDGYN 69 (252)
Q Consensus 7 ~~l~v~~l----p~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~----~~~----a~~a~~--~l~~~~ 69 (252)
+.|||+|| |+.+++++|+++|+.||+|.++.+.. |+.++|||||+|.+ +++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 99999999999999999999999965 46789999999996 433 788888 789999
Q ss_pred cCCeeEEEEecCC
Q 025499 70 FDGCRLRVELAHG 82 (252)
Q Consensus 70 ~~g~~i~v~~~~~ 82 (252)
|+|++|.|.+-..
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998754
No 252
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.1e-17 Score=109.00 Aligned_cols=79 Identities=18% Similarity=0.298 Sum_probs=72.8
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCCcee
Q 025499 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (252)
Q Consensus 121 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i 196 (252)
....++|||+|||..+++++|.++|+.||.|..+.+..+..+ |||||+|.+.++|..|+..|||..+. |+.|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 95 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM----GQPI 95 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSS----SSBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEEC----CcEE
Confidence 445689999999999999999999999999999999988653 69999999999999999999999999 9999
Q ss_pred EeeecCC
Q 025499 197 TVKRYDR 203 (252)
Q Consensus 197 ~v~~~~~ 203 (252)
.|..+..
T Consensus 96 ~V~~a~~ 102 (106)
T 1p27_B 96 SVDWCFV 102 (106)
T ss_dssp EEEESEE
T ss_pred EEEeecC
Confidence 9998873
No 253
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-16 Score=106.40 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=71.7
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeec
Q 025499 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (252)
Q Consensus 122 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (252)
.+..+|||+|||..+++++|+++|++||.|..+.+..++ +||||+|.+.++|..|++.|||..+. |+.|.|..+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~k--g~afV~f~~~~~a~~a~~~l~g~~~~----g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK--GFGFIRLETRTLAEIAKVELDNMPLR----GKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTT--TEEEEECSSSHHHHHHHHHHTTCCBT----TBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCC--CEEEEEECCHHHHHHHHHHhCCCEeC----CceEEEEEc
Confidence 455799999999999999999999999999999998654 89999999999999999999999999 999999998
Q ss_pred CCCC
Q 025499 202 DRSP 205 (252)
Q Consensus 202 ~~~~ 205 (252)
....
T Consensus 87 ~~~~ 90 (99)
T 2cpj_A 87 CHSA 90 (99)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 8543
No 254
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.71 E-value=4.3e-17 Score=113.75 Aligned_cols=81 Identities=21% Similarity=0.243 Sum_probs=73.2
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCC----CcEEEEEcCChhHHHHHHHHhcCccccCCCCCce
Q 025499 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (252)
Q Consensus 120 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~ 195 (252)
...+.++|||+|||..+++++|+++|++||.|..|.+..++. .|||||+|.+.++|.+|+..|+|..|. |+.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~----g~~ 117 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD----GRR 117 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSS----SSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC----CEE
Confidence 344568999999999999999999999999999999988754 369999999999999999999999999 999
Q ss_pred eEeeecCCC
Q 025499 196 ITVKRYDRS 204 (252)
Q Consensus 196 i~v~~~~~~ 204 (252)
|.|..+...
T Consensus 118 l~V~~a~~~ 126 (129)
T 2kxn_B 118 IRVDFSITK 126 (129)
T ss_dssp CEESCCSSS
T ss_pred EEEEEecCC
Confidence 999988743
No 255
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.71 E-value=4.6e-17 Score=110.06 Aligned_cols=79 Identities=18% Similarity=0.275 Sum_probs=71.4
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeee
Q 025499 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (252)
Q Consensus 121 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~ 200 (252)
....++|||+|||..+++++|+++|++||.|..+.+. .|||||+|.+.++|..|+..|||..+. |+.|.|..
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFA----NQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEET----TEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEE
Confidence 4456899999999999999999999999999999998 479999999999999999999999998 99999999
Q ss_pred cCCCCCC
Q 025499 201 YDRSPSR 207 (252)
Q Consensus 201 ~~~~~~r 207 (252)
+...+.+
T Consensus 100 a~~~~~r 106 (108)
T 2jvo_A 100 SKLPAKR 106 (108)
T ss_dssp CSCCC--
T ss_pred ecCCCCC
Confidence 8865443
No 256
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.7e-16 Score=107.75 Aligned_cols=81 Identities=7% Similarity=0.051 Sum_probs=72.1
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCc----eEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeE
Q 025499 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDV----CFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (252)
Q Consensus 122 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v----~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~ 197 (252)
.+.++|||+|||..+++++|.++|+.||.| ..+.+......+||||+|.+.++|..|+..|||..+. |+.|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l~ 98 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLY----GKILV 98 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCS----SCBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeC----CcEEE
Confidence 456899999999999999999999999988 6677776666689999999999999999999999998 99999
Q ss_pred eeecCCCCC
Q 025499 198 VKRYDRSPS 206 (252)
Q Consensus 198 v~~~~~~~~ 206 (252)
|..+.....
T Consensus 99 v~~a~~~~~ 107 (115)
T 2cpx_A 99 IEFGKNKKQ 107 (115)
T ss_dssp EEECCCCSC
T ss_pred EEEccCCCC
Confidence 999985443
No 257
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=6.2e-17 Score=104.74 Aligned_cols=77 Identities=17% Similarity=0.247 Sum_probs=70.1
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHh-cCccccCCCCCceeEe
Q 025499 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL-DDTEFRNPWARGRITV 198 (252)
Q Consensus 120 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l-~g~~~~~~~~g~~i~v 198 (252)
......+|||+|||..+++++|+++|++||.|..+.+..++ +||||+|.+.++|..|+..| +|..+. |+.|.|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~k--g~afV~f~~~~~A~~a~~~l~~~~~~~----g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQ--QCAFIQFATRQAAEVAAEKSFNKLIVN----GRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGG--TEEEEEESSHHHHHHHHHTTTTTCEET----TEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCC--CEEEEEECCHHHHHHHHHHhcCCeeEC----CCEEEE
Confidence 34456899999999999999999999999999999999754 79999999999999999999 999999 999999
Q ss_pred eecC
Q 025499 199 KRYD 202 (252)
Q Consensus 199 ~~~~ 202 (252)
..++
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 8764
No 258
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.71 E-value=7.4e-17 Score=116.63 Aligned_cols=78 Identities=17% Similarity=0.206 Sum_probs=72.7
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCCceeE
Q 025499 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (252)
Q Consensus 122 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~ 197 (252)
...++|||+|||..+++++|+++|++||.|..|.++.+..+ +||||+|.+.++|..||..||+..|. ++.|.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~ 112 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLD----DRIIR 112 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEET----TEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC----CeEEE
Confidence 35689999999999999999999999999999999988654 59999999999999999999999999 99999
Q ss_pred eeecCC
Q 025499 198 VKRYDR 203 (252)
Q Consensus 198 v~~~~~ 203 (252)
|..+..
T Consensus 113 V~~a~~ 118 (156)
T 1h2v_Z 113 TDWDAG 118 (156)
T ss_dssp EEEESC
T ss_pred EEECCC
Confidence 999984
No 259
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5e-17 Score=110.75 Aligned_cols=79 Identities=22% Similarity=0.340 Sum_probs=70.4
Q ss_pred CCCcEEEEcCCCCCC-----------CHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCC
Q 025499 4 RFSRTIYVGNLPSDI-----------REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~-----------t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g 72 (252)
.++++|+|.||.... ++++|+++|++||+|.+|.| .+..++|||||+|.+.++|.+|+..|||..|+|
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 578999999995443 26899999999999999966 555689999999999999999999999999999
Q ss_pred eeEEEEecCCC
Q 025499 73 CRLRVELAHGG 83 (252)
Q Consensus 73 ~~i~v~~~~~~ 83 (252)
++|.|.++.+.
T Consensus 92 r~l~v~~a~~~ 102 (112)
T 2dit_A 92 RQITAQAWDGT 102 (112)
T ss_dssp EECEEEECCSC
T ss_pred cEEEEEEeCCC
Confidence 99999999765
No 260
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.71 E-value=2.9e-17 Score=123.47 Aligned_cols=80 Identities=23% Similarity=0.446 Sum_probs=74.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
.+.++|||+|||+.+|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|.+|+..|+|..|+|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 5679999999999999999999999999999999954 4677899999999999999999999999999999999999
Q ss_pred CCC
Q 025499 81 HGG 83 (252)
Q Consensus 81 ~~~ 83 (252)
.+.
T Consensus 192 ~~~ 194 (198)
T 2yh0_A 192 SVG 194 (198)
T ss_dssp CCC
T ss_pred CCC
Confidence 876
No 261
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.5e-16 Score=109.20 Aligned_cols=81 Identities=19% Similarity=0.200 Sum_probs=72.6
Q ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCC
Q 025499 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (252)
Q Consensus 118 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g 193 (252)
.......++|||+|||..+++++|+++|+.||.|..|.+..++.+ +||||+|.+.++|++|+..|++ .+. +
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~----g 85 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IID----G 85 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EET----T
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCC----C
Confidence 334456689999999999999999999999999999999987543 6999999999999999999998 788 9
Q ss_pred ceeEeeecCC
Q 025499 194 GRITVKRYDR 203 (252)
Q Consensus 194 ~~i~v~~~~~ 203 (252)
+.|.|..+..
T Consensus 86 ~~l~V~~a~~ 95 (116)
T 2cqd_A 86 RKANVNLAYL 95 (116)
T ss_dssp EECEEEESTT
T ss_pred EEEEEEEccc
Confidence 9999999874
No 262
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.1e-16 Score=106.01 Aligned_cols=79 Identities=22% Similarity=0.336 Sum_probs=72.8
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEE-EEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEee
Q 025499 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA-EVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (252)
Q Consensus 121 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~-~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~ 199 (252)
....++|||+|||+.+++++|+++|+.||.|..+ .+..++.++.|||+|.+.++|..|+..|||..+. |+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLE----NFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCS----SCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEEC----CcEEEEE
Confidence 3456899999999999999999999999999999 5888877778999999999999999999999999 9999999
Q ss_pred ecCC
Q 025499 200 RYDR 203 (252)
Q Consensus 200 ~~~~ 203 (252)
.+..
T Consensus 88 ~a~~ 91 (96)
T 2e44_A 88 YIPD 91 (96)
T ss_dssp ECCC
T ss_pred EcCc
Confidence 8874
No 263
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.71 E-value=1.7e-17 Score=109.16 Aligned_cols=74 Identities=12% Similarity=0.174 Sum_probs=67.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCC--ceEEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCcc----ccCCCCCc
Q 025499 125 YRVIVRGLPSSASWQDLKDHMRKAGD--VCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTE----FRNPWARG 194 (252)
Q Consensus 125 ~~l~v~nl~~~~t~~~l~~~f~~~g~--v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~----~~~~~~g~ 194 (252)
.+|||+|||+.+|+++|+++|++||. |..|.+..++.+ |||||+|.+.++|..|++.|||.. +. |+
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~----Gr 85 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID----GK 85 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET----TE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceEC----CE
Confidence 59999999999999999999999995 678988887653 699999999999999999999985 66 99
Q ss_pred eeEeeecC
Q 025499 195 RITVKRYD 202 (252)
Q Consensus 195 ~i~v~~~~ 202 (252)
.|.|..++
T Consensus 86 ~i~V~~Ak 93 (95)
T 2lkz_A 86 TIGVDFAK 93 (95)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcc
Confidence 99999886
No 264
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.71 E-value=7.6e-17 Score=103.84 Aligned_cols=76 Identities=14% Similarity=0.292 Sum_probs=70.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeee
Q 025499 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (252)
Q Consensus 125 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~ 200 (252)
.+|||+|||..+++++|+++|+.||.|..+.+..+..+ |||||+|.+.++|..|+..|||..+. |+.|.|..
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~----g~~l~v~~ 77 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN----GRPLRINW 77 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET----TEECEEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeC----CcEEEEEe
Confidence 58999999999999999999999999999999987543 69999999999999999999999999 99999998
Q ss_pred cCCC
Q 025499 201 YDRS 204 (252)
Q Consensus 201 ~~~~ 204 (252)
+...
T Consensus 78 a~~~ 81 (83)
T 3md1_A 78 AAKL 81 (83)
T ss_dssp CCCC
T ss_pred cCcC
Confidence 8743
No 265
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.71 E-value=3.4e-17 Score=122.88 Aligned_cols=80 Identities=23% Similarity=0.394 Sum_probs=71.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 025499 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (252)
Q Consensus 5 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (252)
+.++|||+|||+++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+.. ++..|+|+.|.|.++.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 568999999999999999999999999999999965 467899999999999999999995 7999999999999998
Q ss_pred CCCC
Q 025499 82 GGSG 85 (252)
Q Consensus 82 ~~~~ 85 (252)
++..
T Consensus 182 ~k~~ 185 (196)
T 1l3k_A 182 SKQE 185 (196)
T ss_dssp ----
T ss_pred ChhH
Confidence 7743
No 266
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.71 E-value=9.7e-17 Score=114.75 Aligned_cols=81 Identities=17% Similarity=0.174 Sum_probs=72.0
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeee
Q 025499 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (252)
Q Consensus 121 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~ 200 (252)
.....+|||+||++.+++++|+++|++||.|..|.+......+||||+|++.++|..|++.|||..|.+. ++.|+|.+
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~--g~~L~V~~ 120 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNA--CCTLRIDF 120 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSS--CSCEEEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCC--CcEEEEEE
Confidence 3445789999999999999999999999999999998766567999999999999999999999999721 49999999
Q ss_pred cCC
Q 025499 201 YDR 203 (252)
Q Consensus 201 ~~~ 203 (252)
++.
T Consensus 121 Ak~ 123 (164)
T 1sjr_A 121 SKL 123 (164)
T ss_dssp CSS
T ss_pred ecC
Confidence 884
No 267
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.1e-16 Score=107.81 Aligned_cols=80 Identities=16% Similarity=0.259 Sum_probs=72.6
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCCce
Q 025499 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (252)
Q Consensus 120 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~ 195 (252)
.....++|||+|||..+++++|+++|+.||.|..|.+..++.+ +||||+|.+.++|..|+.. ++..+. |+.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~----g~~ 86 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLD----GRN 86 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEET----TEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeEC----CEE
Confidence 3455689999999999999999999999999999999988654 6999999999999999998 999999 999
Q ss_pred eEeeecCCC
Q 025499 196 ITVKRYDRS 204 (252)
Q Consensus 196 i~v~~~~~~ 204 (252)
|.|..+...
T Consensus 87 l~V~~a~~~ 95 (105)
T 2dh8_A 87 IDPKPCTPR 95 (105)
T ss_dssp EBCCCSCCS
T ss_pred EEEEEccCC
Confidence 999988743
No 268
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.71 E-value=2e-17 Score=121.52 Aligned_cols=76 Identities=22% Similarity=0.447 Sum_probs=71.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEec
Q 025499 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (252)
Q Consensus 5 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 80 (252)
+.++|||+|||+.+|+++|+++|++||+|..|.+.. ++.++|||||+|.+.++|.+|+..|+|..++|++|.|.+|
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 468999999999999999999999999999999954 4677899999999999999999999999999999999987
No 269
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.1e-16 Score=109.29 Aligned_cols=83 Identities=24% Similarity=0.419 Sum_probs=73.8
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCce--------EEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccc
Q 025499 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVC--------FAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEF 187 (252)
Q Consensus 120 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~--------~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~ 187 (252)
.....++|||+|||..+++++|+++|+.||.|. .+.+..+..+ +||||+|.+.++|..|+..|||..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 344568999999999999999999999999999 6888887543 6999999999999999999999999
Q ss_pred cCCCCCceeEeeecCCCCC
Q 025499 188 RNPWARGRITVKRYDRSPS 206 (252)
Q Consensus 188 ~~~~~g~~i~v~~~~~~~~ 206 (252)
. |+.|.|..+...+.
T Consensus 91 ~----g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 Q----GSKLKVSLARKKPP 105 (113)
T ss_dssp T----TEECEEECSSCCCC
T ss_pred C----CCEEEEEECCCCCC
Confidence 9 99999999885443
No 270
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.71 E-value=1.3e-16 Score=107.95 Aligned_cols=82 Identities=20% Similarity=0.249 Sum_probs=73.9
Q ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCC
Q 025499 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (252)
Q Consensus 118 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g 193 (252)
+.......+|||+|||..+++++|+++|+.||.|..+.+..++.+ |||||+|.+.++|..|+..|+|..+. |
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~----g 95 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA----G 95 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS----S
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC----C
Confidence 334455689999999999999999999999999999999987653 69999999999999999999999999 9
Q ss_pred ceeEeeecCC
Q 025499 194 GRITVKRYDR 203 (252)
Q Consensus 194 ~~i~v~~~~~ 203 (252)
+.|.|..+..
T Consensus 96 ~~l~V~~a~~ 105 (108)
T 2jrs_A 96 RPMKVGHVTE 105 (108)
T ss_dssp SCCEEECSCS
T ss_pred EEEEEEEccc
Confidence 9999998874
No 271
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.71 E-value=7.2e-17 Score=106.92 Aligned_cols=77 Identities=16% Similarity=0.232 Sum_probs=71.4
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCC----CcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEee
Q 025499 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (252)
Q Consensus 124 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~ 199 (252)
.++|||+|||..+++++|.++|+.||.|..+.+..+.. .|||||+|.+.++|..|+..|||..+. |+.|.|.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V~ 77 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLG----SRFLKCG 77 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEET----TEECEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeEC----CeEEEEE
Confidence 47999999999999999999999999999999988754 379999999999999999999999999 9999999
Q ss_pred ecCCC
Q 025499 200 RYDRS 204 (252)
Q Consensus 200 ~~~~~ 204 (252)
.+...
T Consensus 78 ~a~~~ 82 (96)
T 2x1f_A 78 YSSNS 82 (96)
T ss_dssp ECSCS
T ss_pred EcCCC
Confidence 98743
No 272
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.71 E-value=1.6e-16 Score=109.36 Aligned_cols=80 Identities=23% Similarity=0.355 Sum_probs=71.8
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCC----CcEEEEEcCChhHHHHHHHHhcCccccCCCCCc
Q 025499 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (252)
Q Consensus 119 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~ 194 (252)
......++|||+|||..+++++|+++|++||.|..+.+..++. .+||||+|.+.++|..|++.|||..+. |+
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~ 110 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVG----TK 110 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEET----TE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEEC----CE
Confidence 3445678999999999999999999999999999999987754 369999999999999999999999999 99
Q ss_pred eeEeeecC
Q 025499 195 RITVKRYD 202 (252)
Q Consensus 195 ~i~v~~~~ 202 (252)
.|+|..++
T Consensus 111 ~l~V~~ak 118 (118)
T 2khc_A 111 RLKVQLKK 118 (118)
T ss_dssp ECCEEEC-
T ss_pred EEEEEecC
Confidence 99998763
No 273
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.71 E-value=3e-17 Score=107.40 Aligned_cols=76 Identities=13% Similarity=0.159 Sum_probs=66.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHhC--CceEEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEe
Q 025499 125 YRVIVRGLPSSASWQDLKDHMRKAG--DVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (252)
Q Consensus 125 ~~l~v~nl~~~~t~~~l~~~f~~~g--~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v 198 (252)
.+|||+|||..+++++|+++|+.|| .|..+.+..++.+ |||||+|.+.++|.+|++.|||..+. |+.|.|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~----gr~i~V 77 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH----GQNPVV 77 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSS----SCCCEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeC----CEEEEE
Confidence 4799999999999999999999999 9999999988644 69999999999999999999999999 999999
Q ss_pred eecCCC
Q 025499 199 KRYDRS 204 (252)
Q Consensus 199 ~~~~~~ 204 (252)
..+...
T Consensus 78 ~~~~~~ 83 (90)
T 3p5t_L 78 TPSNKL 83 (90)
T ss_dssp CCC---
T ss_pred EECCCC
Confidence 988843
No 274
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.6e-16 Score=105.85 Aligned_cols=79 Identities=9% Similarity=0.131 Sum_probs=71.6
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCce-EEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCCce-
Q 025499 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVC-FAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR- 195 (252)
Q Consensus 122 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~-~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~- 195 (252)
...++|||+|||..+++++|+++|++||.|. .+.+..++.+ +||||+|.+.++|..|+..|||..+. ++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~~ 82 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLP----GATP 82 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEES----SCSS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccC----CCCc
Confidence 3458999999999999999999999999999 9999988644 69999999999999999999999999 777
Q ss_pred ---eEeeecCCC
Q 025499 196 ---ITVKRYDRS 204 (252)
Q Consensus 196 ---i~v~~~~~~ 204 (252)
|+|..+...
T Consensus 83 ~~~l~v~~a~~~ 94 (99)
T 2div_A 83 AKRFKLNYATYS 94 (99)
T ss_dssp CEECCEEETTCC
T ss_pred ceeEEEeecCCC
Confidence 999988743
No 275
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.9e-16 Score=104.62 Aligned_cols=76 Identities=24% Similarity=0.237 Sum_probs=69.4
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHh--CCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEe
Q 025499 121 RHSEYRVIVRGLPSSASWQDLKDHMRKA--GDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (252)
Q Consensus 121 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~--g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v 198 (252)
..+.++|||+|||..+++++|+++|++| |.|..+.+.. +||||+|.+.++|..|+..|||..+. |+.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~----g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR----DYAFVHFSNREDAVEAMKALNGKVLD----GSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECS----SEEEEEESSHHHHHHHHHHHSSEEET----TEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeC----CeEEEEeCCHHHHHHHHHHhCCCEeC----CcEEEE
Confidence 3456899999999999999999999999 8999988764 69999999999999999999999999 999999
Q ss_pred eecCCC
Q 025499 199 KRYDRS 204 (252)
Q Consensus 199 ~~~~~~ 204 (252)
..++..
T Consensus 84 ~~a~~~ 89 (99)
T 2cpd_A 84 TLAKPV 89 (99)
T ss_dssp ECCCCC
T ss_pred EECCCC
Confidence 998743
No 276
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.5e-17 Score=108.81 Aligned_cols=80 Identities=21% Similarity=0.287 Sum_probs=72.8
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCC--CcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeE
Q 025499 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE--GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (252)
Q Consensus 120 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~--~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~ 197 (252)
.....++|||+|||..+++++|+++|++||.|..+.+..+.. .|||||+|.+.++|..|+..|||..+. |+.|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~ 100 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE----GRKIE 100 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEET----TEECE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEEC----CEEEE
Confidence 344568999999999999999999999999999999987754 379999999999999999999999999 99999
Q ss_pred eeecCC
Q 025499 198 VKRYDR 203 (252)
Q Consensus 198 v~~~~~ 203 (252)
|..+..
T Consensus 101 V~~a~~ 106 (109)
T 2err_A 101 VNNATA 106 (109)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 998864
No 277
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.70 E-value=8.6e-17 Score=109.32 Aligned_cols=81 Identities=15% Similarity=0.205 Sum_probs=73.4
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCCc
Q 025499 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (252)
Q Consensus 119 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~ 194 (252)
......++|||+|||..+++++|+++|+.||.|..+.+..+..+ |||||+|.+.++|..|+..|||..+. |+
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~ 96 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM----GQ 96 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEET----TE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC----Cc
Confidence 33456689999999999999999999999999999999877543 79999999999999999999999999 99
Q ss_pred eeEeeecCC
Q 025499 195 RITVKRYDR 203 (252)
Q Consensus 195 ~i~v~~~~~ 203 (252)
.|.|..+..
T Consensus 97 ~l~V~~a~~ 105 (110)
T 1oo0_B 97 TIQVDWCFV 105 (110)
T ss_dssp ECEEEESEE
T ss_pred EEEEEEccc
Confidence 999998873
No 278
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=6e-17 Score=107.74 Aligned_cols=79 Identities=11% Similarity=0.122 Sum_probs=70.4
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCCceeE
Q 025499 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (252)
Q Consensus 122 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~ 197 (252)
...++|||+|||..+++++|+++|..||.|..+.++.+..+ +||||+|.+.++|++|+..|||..+. |+.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l~ 88 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG----SRKVK 88 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEET----TEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeC----CeEEE
Confidence 34589999999999999999999999999987766665443 69999999999999999999999999 99999
Q ss_pred eeecCCC
Q 025499 198 VKRYDRS 204 (252)
Q Consensus 198 v~~~~~~ 204 (252)
|..+..+
T Consensus 89 V~~a~~~ 95 (98)
T 2cqp_A 89 LVLGSGP 95 (98)
T ss_dssp EEESSCS
T ss_pred EEEcCCC
Confidence 9998754
No 279
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.70 E-value=1.4e-16 Score=107.74 Aligned_cols=79 Identities=15% Similarity=0.205 Sum_probs=71.8
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC---cEEEEEcCChhHHHHHHHHhcCccccCCCCCcee
Q 025499 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (252)
Q Consensus 120 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i 196 (252)
...+..+|||+|||..+++++|+++|++||.|..+.+..+..+ +||||+|.+.++|..|+..|||..+. |+.|
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 100 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLD----GRPM 100 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeC----CcEE
Confidence 3456789999999999999999999999999999999987632 69999999999999999999999999 9999
Q ss_pred EeeecC
Q 025499 197 TVKRYD 202 (252)
Q Consensus 197 ~v~~~~ 202 (252)
.|..+.
T Consensus 101 ~V~~a~ 106 (107)
T 3ulh_A 101 NIQLVT 106 (107)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 998764
No 280
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.70 E-value=6.4e-17 Score=118.37 Aligned_cols=77 Identities=30% Similarity=0.493 Sum_probs=71.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCC--eeEEEE
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVE 78 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g--~~i~v~ 78 (252)
.++++|||+|||..+|+++|+++|++||.|..+.+.. ++.++|||||+|.+.++|.+|+..|+|..+.| ++|.|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 4678999999999999999999999999999999955 45678999999999999999999999999988 999998
Q ss_pred ec
Q 025499 79 LA 80 (252)
Q Consensus 79 ~~ 80 (252)
+|
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 281
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.70 E-value=8.2e-17 Score=120.14 Aligned_cols=77 Identities=17% Similarity=0.361 Sum_probs=69.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec--CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 025499 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (252)
Q Consensus 6 ~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 83 (252)
.++|||+|||+++|+++|.++|++||+|..|.+.. ++.++|||||+|.+.++|.+|+..+ +..|+|++|.|.++...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 58999999999999999999999999999999965 4677899999999999999999854 56999999999998765
No 282
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.70 E-value=6.6e-17 Score=119.04 Aligned_cols=78 Identities=18% Similarity=0.286 Sum_probs=70.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec--CCCCCeEEEEEECCHHHHHHHHHhcCCcccC---CeeEEEE
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFD---GCRLRVE 78 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~---g~~i~v~ 78 (252)
.+.++|||+|||+.+|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|.+|+..|+|..+. |++|.|.
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 3678999999999999999999999999999999955 4667899999999999999999999998775 4999999
Q ss_pred ecC
Q 025499 79 LAH 81 (252)
Q Consensus 79 ~~~ 81 (252)
|+.
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 873
No 283
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=9.6e-17 Score=109.18 Aligned_cols=81 Identities=15% Similarity=0.124 Sum_probs=73.2
Q ss_pred CCCccEEEEeCCCCCCCHHHHH---HHHHHhCCceEEEEeeCCCC-------cEEEEEcCChhHHHHHHHHhcCccccCC
Q 025499 121 RHSEYRVIVRGLPSSASWQDLK---DHMRKAGDVCFAEVSRDSEG-------TYGVVDYTNPEDMKYAIRKLDDTEFRNP 190 (252)
Q Consensus 121 ~~~~~~l~v~nl~~~~t~~~l~---~~f~~~g~v~~~~~~~~~~~-------~~afv~f~~~~~a~~a~~~l~g~~~~~~ 190 (252)
.....+|||+|||+.+++++|. ++|++||.|..+.+..+..+ |||||+|.+.++|..|++.|||..+.
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~-- 89 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD-- 89 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET--
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC--
Confidence 3446799999999999999999 99999999999999877642 69999999999999999999999999
Q ss_pred CCCceeEeeecCCCC
Q 025499 191 WARGRITVKRYDRSP 205 (252)
Q Consensus 191 ~~g~~i~v~~~~~~~ 205 (252)
|+.|.|..+...+
T Consensus 90 --gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 --GRTLKASLGTTKY 102 (111)
T ss_dssp --TEEEEEESCCCCS
T ss_pred --CEEEEEEeccccc
Confidence 9999999988543
No 284
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.69 E-value=1.5e-15 Score=105.34 Aligned_cols=80 Identities=14% Similarity=0.155 Sum_probs=73.1
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCC---CCcEEEEEcCChhHHHHHHHHhcCccccCCCCCcee
Q 025499 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS---EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (252)
Q Consensus 120 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~---~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i 196 (252)
.....++|||+|||..+++++|+++|+.||.|..+.+..+. ..|||||+|.+.++|..|+..|||..+. |+.|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l 106 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD----GRPM 106 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESS----SCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEEC----CcEE
Confidence 44567899999999999999999999999999999999876 2369999999999999999999999999 9999
Q ss_pred EeeecCC
Q 025499 197 TVKRYDR 203 (252)
Q Consensus 197 ~v~~~~~ 203 (252)
.|..+..
T Consensus 107 ~V~~a~~ 113 (124)
T 2kt5_A 107 DIQLVAS 113 (124)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 9998874
No 285
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.2e-16 Score=103.97 Aligned_cols=78 Identities=17% Similarity=0.185 Sum_probs=68.3
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCC-ceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcC-ccccCCCCCceeEeee
Q 025499 123 SEYRVIVRGLPSSASWQDLKDHMRKAGD-VCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD-TEFRNPWARGRITVKR 200 (252)
Q Consensus 123 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~-v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g-~~~~~~~~g~~i~v~~ 200 (252)
..++|||+|||..+++++|+++|++||. |..+.+.. .+||||+|.+.++|..|+..||| ..+. |+.|.|..
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~----g~~l~v~~ 79 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLK---SGYAFVDYPDQNWAIRAIETLSGKVELH----GKIMEVDY 79 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEE---TTEEEECCSCHHHHHHHHHHHTTTCEET----TEECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcC---CCEEEEEECCHHHHHHHHHHccCCeeEC----CEEEEEEE
Confidence 4579999999999999999999999999 66666643 37999999999999999999999 9998 99999999
Q ss_pred cCCCCCC
Q 025499 201 YDRSPSR 207 (252)
Q Consensus 201 ~~~~~~r 207 (252)
+...+.+
T Consensus 80 a~~~~~~ 86 (93)
T 2cqh_A 80 SVSKKLR 86 (93)
T ss_dssp CCCCCCC
T ss_pred ccCcccc
Confidence 9854443
No 286
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.69 E-value=8.2e-17 Score=112.83 Aligned_cols=80 Identities=23% Similarity=0.294 Sum_probs=72.0
Q ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHHHHhCC---ceEEEEeeCCCC---cEEEEEcCChhHHHHHHHHhcCccccCCC
Q 025499 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD---VCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPW 191 (252)
Q Consensus 118 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~---v~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~ 191 (252)
.++....++|||+|||+.+|+++|+++|+.||. |..|.+..+..+ |||||+|.+.++|.+|+. ||+..+.
T Consensus 38 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~--- 113 (136)
T 2hgl_A 38 GPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMG--- 113 (136)
T ss_dssp CSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESS---
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEEC---
Confidence 444556789999999999999999999999999 889999887653 699999999999999999 9999999
Q ss_pred CCceeEeeecC
Q 025499 192 ARGRITVKRYD 202 (252)
Q Consensus 192 ~g~~i~v~~~~ 202 (252)
++.|.|..+.
T Consensus 114 -gr~i~V~~a~ 123 (136)
T 2hgl_A 114 -HRYIEVFKSH 123 (136)
T ss_dssp -SSEEEEEECC
T ss_pred -CEEEEEEECC
Confidence 9999998875
No 287
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.69 E-value=1e-16 Score=110.13 Aligned_cols=80 Identities=25% Similarity=0.328 Sum_probs=72.0
Q ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHHHHhCC---ceEEEEeeCCCC---cEEEEEcCChhHHHHHHHHhcCccccCCC
Q 025499 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD---VCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPW 191 (252)
Q Consensus 118 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~---v~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~ 191 (252)
.......++|||+|||+.+++++|+++|+.||. |..|.+..+..+ |||||+|.+.++|.+||. ||+..|.
T Consensus 11 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~--- 86 (118)
T 2db1_A 11 GPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMG--- 86 (118)
T ss_dssp SSCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEET---
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeEC---
Confidence 344556789999999999999999999999998 899999887653 699999999999999999 9999999
Q ss_pred CCceeEeeecC
Q 025499 192 ARGRITVKRYD 202 (252)
Q Consensus 192 ~g~~i~v~~~~ 202 (252)
++.|.|..+.
T Consensus 87 -gr~i~V~~a~ 96 (118)
T 2db1_A 87 -HRYIEVFKSH 96 (118)
T ss_dssp -TEEEEEEEEC
T ss_pred -CeEEEEEECC
Confidence 9999998876
No 288
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=8e-16 Score=105.20 Aligned_cols=83 Identities=19% Similarity=0.281 Sum_probs=73.0
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC---cEEEEEcCChhHHHHHHHHhcCccccCCC----C
Q 025499 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPW----A 192 (252)
Q Consensus 120 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~----~ 192 (252)
.....++|||+|||..+++++|+++|+.||.|..+.+..+... +||||+|.+.++|..|+..|||..+.+.. .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3345689999999999999999999999999999999988632 69999999999999999999999996333 4
Q ss_pred CceeEeeecC
Q 025499 193 RGRITVKRYD 202 (252)
Q Consensus 193 g~~i~v~~~~ 202 (252)
++.|.|.+++
T Consensus 101 ~~~l~v~~a~ 110 (114)
T 1x5o_A 101 TEPLLCKFSG 110 (114)
T ss_dssp SSCBEEEECC
T ss_pred CCceeEEccC
Confidence 8889998887
No 289
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.69 E-value=7.3e-17 Score=107.60 Aligned_cols=76 Identities=21% Similarity=0.274 Sum_probs=70.5
Q ss_pred CccEEEEeCCCC------CCCHHHHHHHHHHhCCceEEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCC
Q 025499 123 SEYRVIVRGLPS------SASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWA 192 (252)
Q Consensus 123 ~~~~l~v~nl~~------~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~ 192 (252)
..++|||+|||. .+++++|+++|++||.|..+.++.++.+ |||||+|.+.++|.+|+..|||..+.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~---- 80 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD---- 80 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSS----
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccC----
Confidence 357999999999 9999999999999999999999988763 69999999999999999999999999
Q ss_pred C-ceeEeeecC
Q 025499 193 R-GRITVKRYD 202 (252)
Q Consensus 193 g-~~i~v~~~~ 202 (252)
| +.|.|..+.
T Consensus 81 g~r~l~V~~a~ 91 (100)
T 3ns6_A 81 LKHRLFLYTMK 91 (100)
T ss_dssp SSCBCEEEESH
T ss_pred CCeEEEEEECc
Confidence 8 999998765
No 290
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.4e-16 Score=105.51 Aligned_cols=75 Identities=16% Similarity=0.291 Sum_probs=68.9
Q ss_pred CCccEEEEeCCCC-CCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeee
Q 025499 122 HSEYRVIVRGLPS-SASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (252)
Q Consensus 122 ~~~~~l~v~nl~~-~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~ 200 (252)
.+.++|||+|||. .+++++|.++|++||.|..+.+. .+||||+|.+.++|..|+..|||..+. |+.|.|..
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNF----GKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCB----TTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeC----CcEEEEEE
Confidence 4568999999998 99999999999999999999986 379999999999999999999999999 99999999
Q ss_pred cCCC
Q 025499 201 YDRS 204 (252)
Q Consensus 201 ~~~~ 204 (252)
+...
T Consensus 80 a~~~ 83 (96)
T 2kvi_A 80 SSSN 83 (96)
T ss_dssp EECC
T ss_pred cCcC
Confidence 8743
No 291
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=9.2e-16 Score=105.32 Aligned_cols=77 Identities=8% Similarity=0.012 Sum_probs=67.4
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCCcE-EEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeec
Q 025499 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTY-GVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (252)
Q Consensus 123 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~-afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (252)
....|||+||++.+++++|.++|++||.|..|.+... .|+ |||+|++.++|..|++.|||..|.+. ++.|+|.++
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~--~~~l~V~~A 99 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--NGIQAMVEFESVLCAQKAKAALNGADIYAG--CCTLKIEYA 99 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--SSEEEEEEESSHHHHHHHHHHHTTCCCBTT--BSEEEEECC
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEecCC--CeEEEEEEe
Confidence 3456789999999999999999999999999998764 375 99999999999999999999999821 268999988
Q ss_pred CC
Q 025499 202 DR 203 (252)
Q Consensus 202 ~~ 203 (252)
+.
T Consensus 100 k~ 101 (124)
T 2e5i_A 100 RP 101 (124)
T ss_dssp SC
T ss_pred cC
Confidence 74
No 292
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.68 E-value=2.7e-16 Score=104.20 Aligned_cols=77 Identities=17% Similarity=0.302 Sum_probs=69.5
Q ss_pred CCCCCccEEEEeCCCC-CCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeE
Q 025499 119 ISRHSEYRVIVRGLPS-SASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (252)
Q Consensus 119 ~~~~~~~~l~v~nl~~-~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~ 197 (252)
......++|||+|||. .+++++|+++|+.||.|..+.+. .|||||+|.+.++|..|+..|||..+. |+.|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMNF----GKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEET----TEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEEC----CEEEE
Confidence 3345678999999998 99999999999999999999985 479999999999999999999999999 99999
Q ss_pred eeecCC
Q 025499 198 VKRYDR 203 (252)
Q Consensus 198 v~~~~~ 203 (252)
|..++.
T Consensus 89 V~~a~~ 94 (97)
T 2xnq_A 89 LEVSSS 94 (97)
T ss_dssp EEECCC
T ss_pred EEecCC
Confidence 998874
No 293
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=106.70 Aligned_cols=80 Identities=16% Similarity=0.221 Sum_probs=67.2
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeee
Q 025499 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (252)
Q Consensus 121 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~ 200 (252)
.....+|||+|||..+++++|+++|++||.|..+........+||||+|.+.++|+.|+..|||..+. ++.|.|..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE----GRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEET----TEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeC----CeEEEEEE
Confidence 34568999999999999999999999999873222211223479999999999999999999999999 99999999
Q ss_pred cCCC
Q 025499 201 YDRS 204 (252)
Q Consensus 201 ~~~~ 204 (252)
+...
T Consensus 88 a~~~ 91 (101)
T 2fc9_A 88 QGPR 91 (101)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 8854
No 294
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=3.6e-16 Score=108.32 Aligned_cols=79 Identities=9% Similarity=0.162 Sum_probs=69.8
Q ss_pred CCccEEEEeCCCCCCCHHHHH----HHHHHhCCceEEEEeeC-CCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCcee
Q 025499 122 HSEYRVIVRGLPSSASWQDLK----DHMRKAGDVCFAEVSRD-SEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (252)
Q Consensus 122 ~~~~~l~v~nl~~~~t~~~l~----~~f~~~g~v~~~~~~~~-~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i 196 (252)
.+..+|||+|||+.+++++|+ ++|++||.|..|.+... ...|||||+|.+.++|..|+..|||..+. |+.|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~----gr~l 102 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQ----GNPL 102 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCT----TSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeC----CCEE
Confidence 456799999999999999876 69999999999888653 34489999999999999999999999999 9999
Q ss_pred EeeecCCC
Q 025499 197 TVKRYDRS 204 (252)
Q Consensus 197 ~v~~~~~~ 204 (252)
.|..+...
T Consensus 103 ~V~~a~~~ 110 (127)
T 2a3j_A 103 VITFSETP 110 (127)
T ss_dssp EEEECCCC
T ss_pred EEEEccCc
Confidence 99998743
No 295
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-16 Score=108.82 Aligned_cols=75 Identities=15% Similarity=0.315 Sum_probs=69.3
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeecC
Q 025499 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (252)
Q Consensus 123 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~~ 202 (252)
..++|||+|||..+++++|+++|++||.|..|.+... .+||||+|.+.++|..|+..|||..+. |+.|.|..+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG--GITAIVEFLEPLEARKAFRHLAYSKFH----HVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS--SSCEEEEESCHHHHHHHHHHHTTCBSS----SSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEeCCHHHHHHHHHHhCCCEEC----CeEEEEEECC
Confidence 4679999999999999999999999999999988754 379999999999999999999999999 9999999887
Q ss_pred C
Q 025499 203 R 203 (252)
Q Consensus 203 ~ 203 (252)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 296
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.68 E-value=1.5e-16 Score=116.20 Aligned_cols=77 Identities=30% Similarity=0.559 Sum_probs=69.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec---CCCCCeEEEEEECCHHHHHHHHHhcCCcccCCee--EEEE
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR--LRVE 78 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~--i~v~ 78 (252)
.+.++|||+|||+.+|+++|+++|++||.|..+.+.. ++.++|||||+|.+.++|.+|+..|+|..+.|+. |.|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 3568999999999999999999999999999999954 4567899999999999999999999999999964 8887
Q ss_pred ec
Q 025499 79 LA 80 (252)
Q Consensus 79 ~~ 80 (252)
||
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 297
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.6e-16 Score=107.12 Aligned_cols=81 Identities=19% Similarity=0.213 Sum_probs=69.6
Q ss_pred CCccEEEE--eCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccc-cCCCCCceeEe
Q 025499 122 HSEYRVIV--RGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEF-RNPWARGRITV 198 (252)
Q Consensus 122 ~~~~~l~v--~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~-~~~~~g~~i~v 198 (252)
.+..+||| +||+..+++++|+++|++||.|..+.+..+ .|||||+|.+.++|..|++.|||..+ ..-..++.|.|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~--rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v 100 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN--KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 100 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT--CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEE
Confidence 34578999 779999999999999999999999988754 48999999999999999999999998 32223889999
Q ss_pred eecCCC
Q 025499 199 KRYDRS 204 (252)
Q Consensus 199 ~~~~~~ 204 (252)
.++..-
T Consensus 101 ~~a~~~ 106 (114)
T 2cq2_A 101 NFVEKV 106 (114)
T ss_dssp EEESCC
T ss_pred EecccC
Confidence 998743
No 298
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.7e-16 Score=105.09 Aligned_cols=76 Identities=17% Similarity=0.284 Sum_probs=68.9
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCC---CcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEe
Q 025499 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (252)
Q Consensus 122 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~---~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v 198 (252)
....+|||+|||..+|+++|.++|++||.|..|.+..+.. .|||||+|.+.++|..|+. ++|..+. |+.|.|
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~----gr~l~V 83 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYK----ETDLLI 83 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCT----TTTCEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEEC----CEEEEE
Confidence 3457999999999999999999999999999999998754 3799999999999999999 9999999 999999
Q ss_pred eecC
Q 025499 199 KRYD 202 (252)
Q Consensus 199 ~~~~ 202 (252)
..+.
T Consensus 84 ~~~~ 87 (103)
T 1s79_A 84 LFKD 87 (103)
T ss_dssp EEHH
T ss_pred EEch
Confidence 7644
No 299
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.68 E-value=7.4e-16 Score=109.31 Aligned_cols=78 Identities=22% Similarity=0.274 Sum_probs=70.1
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCC----CcEEEEEcCChhHHHHHHHHhcCccccCCCCCce
Q 025499 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (252)
Q Consensus 120 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~ 195 (252)
...+..+|||+|||..+++++|+++|++||.|..+.+..++. .|||||+|.+.++|.+|++.|||..+. |+.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 134 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF----GRT 134 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET----TEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC----CEE
Confidence 344568999999999999999999999999999999987743 379999999999999999999999999 999
Q ss_pred eEeeec
Q 025499 196 ITVKRY 201 (252)
Q Consensus 196 i~v~~~ 201 (252)
|.|..+
T Consensus 135 l~v~~A 140 (140)
T 2ku7_A 135 IRVNLA 140 (140)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 998764
No 300
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.68 E-value=3.7e-16 Score=107.04 Aligned_cols=77 Identities=21% Similarity=0.250 Sum_probs=71.2
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCC-CcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeee
Q 025499 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (252)
Q Consensus 122 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~-~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~ 200 (252)
.+..+|||+|||..+++++|.++|+.||.|..+.+..+.. .|||||+|.+.++|..|+..|||..+. |+.|.|..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~v~~ 81 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVS----NRYLVVLY 81 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSS----SCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEE
Confidence 3557999999999999999999999999999999987654 379999999999999999999999999 99999998
Q ss_pred cC
Q 025499 201 YD 202 (252)
Q Consensus 201 ~~ 202 (252)
+.
T Consensus 82 a~ 83 (115)
T 3lqv_A 82 YN 83 (115)
T ss_dssp CC
T ss_pred ec
Confidence 87
No 301
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=3.3e-16 Score=104.71 Aligned_cols=75 Identities=15% Similarity=0.104 Sum_probs=69.1
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeec
Q 025499 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (252)
Q Consensus 122 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (252)
...++|||+|||..+++++|+++|+.||.|..+.+.. ..+||||+|.+.++|..|+..|||..+. |+.|.|..+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP--EKGCCFIKYDTHEQAAVCIVALANFPFQ----GRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEET----TEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCeEC----CeEEEEEec
Confidence 3457999999999999999999999999999999884 3489999999999999999999999999 999999877
Q ss_pred C
Q 025499 202 D 202 (252)
Q Consensus 202 ~ 202 (252)
+
T Consensus 99 ~ 99 (101)
T 2la4_A 99 K 99 (101)
T ss_dssp C
T ss_pred c
Confidence 5
No 302
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.68 E-value=2.2e-16 Score=125.24 Aligned_cols=76 Identities=21% Similarity=0.381 Sum_probs=70.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccC-CeeEEEEecC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD-GCRLRVELAH 81 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~~~ 81 (252)
.++++|||+|||..+|+++|+++|++||.|.+|.+..+. +|||||+|.+.++|.+|+..|+|..|. |+.|.|.|++
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR--HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC--CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 467899999999999999999999999999999997543 589999999999999999999999999 9999999985
No 303
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=5.5e-16 Score=101.56 Aligned_cols=78 Identities=21% Similarity=0.300 Sum_probs=70.6
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC---cEEEEEcCChhHHHHHHHHhcCccccCCCCCceeE
Q 025499 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (252)
Q Consensus 121 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~ 197 (252)
.....+|||+|||..+++++|+++|+.| .|..+.++.+..+ |||||+|.+.++|..|+. |||..+. |+.|.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~----gr~i~ 80 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMG----GRYIE 80 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEET----TEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeC----CcEEE
Confidence 3456899999999999999999999999 9999999987432 699999999999999999 9999999 99999
Q ss_pred eeecCCC
Q 025499 198 VKRYDRS 204 (252)
Q Consensus 198 v~~~~~~ 204 (252)
|..+...
T Consensus 81 v~~a~~~ 87 (91)
T 2dgw_A 81 VFREKSG 87 (91)
T ss_dssp EEEESSC
T ss_pred EEECCcC
Confidence 9998754
No 304
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2e-16 Score=106.36 Aligned_cols=80 Identities=28% Similarity=0.384 Sum_probs=72.7
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCCceeE
Q 025499 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (252)
Q Consensus 122 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~ 197 (252)
....+|||+|||..+++++|+++|+.||.|..+.+..+..+ |||||+|.+.++|..|++.|||..+. |+.|.
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~ 81 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFS----GRALR 81 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCS----SSCBE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC----CcEEE
Confidence 34579999999999999999999999999999999987543 69999999999999999999999999 99999
Q ss_pred eeecCCCC
Q 025499 198 VKRYDRSP 205 (252)
Q Consensus 198 v~~~~~~~ 205 (252)
|..+....
T Consensus 82 v~~a~~~~ 89 (104)
T 1p1t_A 82 VDNAASEK 89 (104)
T ss_dssp EEETTCTT
T ss_pred EEeCCCcc
Confidence 99987443
No 305
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.67 E-value=3.3e-16 Score=108.77 Aligned_cols=76 Identities=21% Similarity=0.329 Sum_probs=69.9
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEe
Q 025499 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (252)
Q Consensus 123 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v 198 (252)
...+|||+|||..+++++|+++|+.||.|..|.+..++.+ |||||+|.+.++|..|+ .|||..+. |+.|.|
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~----g~~l~V 109 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFR----GRTIKV 109 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEET----TEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeEC----CeEEEE
Confidence 3579999999999999999999999999999999887533 69999999999999999 79999999 999999
Q ss_pred eecCC
Q 025499 199 KRYDR 203 (252)
Q Consensus 199 ~~~~~ 203 (252)
..++.
T Consensus 110 ~~a~~ 114 (124)
T 2jwn_A 110 LPKRT 114 (124)
T ss_dssp EESSC
T ss_pred EECCC
Confidence 99874
No 306
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.67 E-value=1.9e-16 Score=106.19 Aligned_cols=80 Identities=25% Similarity=0.375 Sum_probs=69.9
Q ss_pred CCCCcEEEEcCC--CCCCC--------HHHHHHHHhhcCceeEEEEecC-----CCCCeEEEEEECCHHHHHHHHHhcCC
Q 025499 3 GRFSRTIYVGNL--PSDIR--------EYEVEDLFYKYGRILDIELKIP-----PRPPCYCFVEFENARDAEDAIRGRDG 67 (252)
Q Consensus 3 ~~~~~~l~v~~l--p~~~t--------~~~l~~~f~~~G~v~~v~~~~~-----~~~~g~afV~f~~~~~a~~a~~~l~~ 67 (252)
+.|+++|.|.|+ |.++. +++|+++|++||+|.+|.|..+ +.++|+|||+|.+.++|.+|+..|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 479999999998 33433 4789999999999999999654 25789999999999999999999999
Q ss_pred cccCCeeEEEEecCC
Q 025499 68 YNFDGCRLRVELAHG 82 (252)
Q Consensus 68 ~~~~g~~i~v~~~~~ 82 (252)
..++|++|.|.++..
T Consensus 82 ~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 82 RKFANRVVVTKYCDP 96 (105)
T ss_dssp CEETTEECEEEEECH
T ss_pred CEeCCCEEEEEEeCH
Confidence 999999999999754
No 307
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.6e-16 Score=103.94 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=68.0
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC---cEEEEEcCChhHHHHHHHHhcCccccCCCCCceeE
Q 025499 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (252)
Q Consensus 121 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~ 197 (252)
.....+|||+|||+.+++++|+++|+.||. +.|.++.++.. |||||+|.+.++|.+||. +|+..|. ++.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~----gr~i~ 85 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQ----HRYVE 85 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSS----SSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeEC----CcEEE
Confidence 345689999999999999999999999994 58999887643 699999999999999995 7999999 99999
Q ss_pred eeecCC
Q 025499 198 VKRYDR 203 (252)
Q Consensus 198 v~~~~~ 203 (252)
|..+..
T Consensus 86 V~~~~~ 91 (102)
T 1wez_A 86 LFLNST 91 (102)
T ss_dssp EEEECC
T ss_pred EEECCC
Confidence 988774
No 308
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.67 E-value=1.6e-16 Score=119.49 Aligned_cols=78 Identities=17% Similarity=0.273 Sum_probs=72.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcC-ceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccC-CeeEEEEecC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD-GCRLRVELAH 81 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G-~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~~~ 81 (252)
.++++|||+|||..+|+++|+++|+.|| .|..|.+..+ .+|||||+|.+.++|.+|+..|+|..+. |++|.|.|+.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST--TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 4589999999999999999999999999 9999999653 3799999999999999999999999999 9999999987
Q ss_pred CC
Q 025499 82 GG 83 (252)
Q Consensus 82 ~~ 83 (252)
+.
T Consensus 196 ~~ 197 (198)
T 1qm9_A 196 ST 197 (198)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 309
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.67 E-value=4.5e-16 Score=109.06 Aligned_cols=78 Identities=10% Similarity=0.177 Sum_probs=70.6
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCceE--EEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCc----cccCC
Q 025499 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF--AEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDT----EFRNP 190 (252)
Q Consensus 121 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~--~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~----~~~~~ 190 (252)
.....+|||+|||+.+++++|+++|++||.|.. |.++.++.+ |||||+|.+. +|..|+..|||. .+.
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~-- 96 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID-- 96 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC--
Confidence 345679999999999999999999999999976 899888743 6999999999 999999999999 888
Q ss_pred CCCceeEeeecCC
Q 025499 191 WARGRITVKRYDR 203 (252)
Q Consensus 191 ~~g~~i~v~~~~~ 203 (252)
|+.|.|..+..
T Consensus 97 --gr~l~V~~a~~ 107 (131)
T 2m2b_A 97 --GKTINVEFAKG 107 (131)
T ss_dssp --GCCCCCEECCC
T ss_pred --CEEEEEEECCC
Confidence 99999999874
No 310
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.5e-15 Score=101.91 Aligned_cols=80 Identities=23% Similarity=0.285 Sum_probs=70.4
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCCc
Q 025499 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (252)
Q Consensus 119 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~ 194 (252)
....+..+|||+|||..+++++|+++|+.||.|..|.+..++.+ |||||+|.+.++|..|+. ++..+. |+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~----g~ 83 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMID----GR 83 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEET----TE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeC----Ce
Confidence 34455689999999999999999999999999999999988653 699999999999999998 466787 99
Q ss_pred eeEeeecCCC
Q 025499 195 RITVKRYDRS 204 (252)
Q Consensus 195 ~i~v~~~~~~ 204 (252)
.|.|..+...
T Consensus 84 ~l~v~~a~~~ 93 (103)
T 2cqg_A 84 WCDCKLPNSK 93 (103)
T ss_dssp EEEEECCCTT
T ss_pred EEEEEecCCC
Confidence 9999998843
No 311
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.5e-16 Score=106.99 Aligned_cols=76 Identities=18% Similarity=0.218 Sum_probs=70.1
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCCceeE
Q 025499 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (252)
Q Consensus 122 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~ 197 (252)
...++|||+|||..+++++|+++|+.||.|..|.+..+..+ |||||+|.+.++|..|+ .|||..|. |+.|.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~----g~~l~ 97 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLL----GVPII 97 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEET----TEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeC----CeEEE
Confidence 34579999999999999999999999999999999987653 69999999999999999 99999999 99999
Q ss_pred eeecC
Q 025499 198 VKRYD 202 (252)
Q Consensus 198 v~~~~ 202 (252)
|..+.
T Consensus 98 V~~a~ 102 (114)
T 2cq4_A 98 VQASQ 102 (114)
T ss_dssp EEEHH
T ss_pred EEecC
Confidence 98876
No 312
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.67 E-value=3.8e-16 Score=112.42 Aligned_cols=76 Identities=16% Similarity=0.174 Sum_probs=70.1
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhC--CceEEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCCcee
Q 025499 123 SEYRVIVRGLPSSASWQDLKDHMRKAG--DVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (252)
Q Consensus 123 ~~~~l~v~nl~~~~t~~~l~~~f~~~g--~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i 196 (252)
...+|||+|||+.+++++|+++|+.|| .|..|.++.+..+ |||||+|.+.++|..||..|||..|. |+.|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~----Gr~l 129 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN----GEKV 129 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET----TEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC----CeEe
Confidence 457999999999999999999999999 9999999988654 59999999999999999999999999 9999
Q ss_pred EeeecC
Q 025499 197 TVKRYD 202 (252)
Q Consensus 197 ~v~~~~ 202 (252)
.|..+.
T Consensus 130 ~V~~a~ 135 (156)
T 3n9u_C 130 DVRPAT 135 (156)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 999886
No 313
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.8e-16 Score=105.94 Aligned_cols=78 Identities=22% Similarity=0.261 Sum_probs=69.5
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCC---CcEEEEEcCChhHHHHHHHHhcCccccCCCCCce
Q 025499 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (252)
Q Consensus 119 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~---~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~ 195 (252)
+......+|||+|||+.+++++|+++|+.| .|..|.+..+.. .|||||+|.+.++|.+|| .+|+..|. ++.
T Consensus 11 ~~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~----gr~ 84 (109)
T 2dnn_A 11 PINPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMI----QRY 84 (109)
T ss_dssp CCCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEET----TEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeEC----CeE
Confidence 334456899999999999999999999999 899999987754 379999999999999999 69999999 999
Q ss_pred eEeeecC
Q 025499 196 ITVKRYD 202 (252)
Q Consensus 196 i~v~~~~ 202 (252)
|.|..+.
T Consensus 85 i~V~~a~ 91 (109)
T 2dnn_A 85 VEVSPAT 91 (109)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 9998775
No 314
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.2e-15 Score=101.14 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=69.3
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeec
Q 025499 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (252)
Q Consensus 122 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (252)
.+.++|||+|| .+++++|+++|++||.|..|.+. ...+||||+|.+.++|..|+..|||..+. |+.|.|..+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVE----SVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEET----TEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeEC----CeEEEEEEC
Confidence 45689999996 89999999999999999999985 34489999999999999999999999998 999999998
Q ss_pred CCCCCC
Q 025499 202 DRSPSR 207 (252)
Q Consensus 202 ~~~~~r 207 (252)
...+..
T Consensus 85 ~~~~~~ 90 (97)
T 1x5p_A 85 RKQPML 90 (97)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 854443
No 315
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.67 E-value=4.7e-16 Score=101.49 Aligned_cols=75 Identities=19% Similarity=0.333 Sum_probs=69.6
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCC----CcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEee
Q 025499 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (252)
Q Consensus 124 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~ 199 (252)
.++|||+|||..+++++|+++|+.||.|..+.+..+.. .+||||+|.+.++|..|+ .|||..+. |+.|.|.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~----g~~l~V~ 80 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFR----GRQIKVI 80 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEET----TEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEEC----CcEEEEE
Confidence 47999999999999999999999999999999998753 369999999999999999 99999999 9999999
Q ss_pred ecCC
Q 025499 200 RYDR 203 (252)
Q Consensus 200 ~~~~ 203 (252)
.++.
T Consensus 81 ~a~~ 84 (89)
T 3ucg_A 81 PKRT 84 (89)
T ss_dssp ETTT
T ss_pred EccC
Confidence 8873
No 316
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.67 E-value=5.5e-16 Score=100.67 Aligned_cols=76 Identities=20% Similarity=0.319 Sum_probs=68.0
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCCcee
Q 025499 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (252)
Q Consensus 121 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i 196 (252)
.....+|||+|||..+++++|+++|++||.|..+.+..++.+ |||||+|.+.++|..|+. +++..+. |+.|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~----g~~i 82 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLD----GRVI 82 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEET----TEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEEC----CEEE
Confidence 345689999999999999999999999999999999988653 699999999999999996 5888888 9999
Q ss_pred Eeeec
Q 025499 197 TVKRY 201 (252)
Q Consensus 197 ~v~~~ 201 (252)
.|+.+
T Consensus 83 ~v~~A 87 (87)
T 3s7r_A 83 DPKKA 87 (87)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 98764
No 317
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=6.9e-17 Score=104.53 Aligned_cols=74 Identities=20% Similarity=0.310 Sum_probs=67.2
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCC----CcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEe
Q 025499 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (252)
Q Consensus 123 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v 198 (252)
+..+|||+|||..+++++|+++|++||.|..+.+..++. .|||||+|.+.++|..|+..|||..+. |+.|++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~~~~ 79 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ----AQMAKQ 79 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC----EESCCS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe----eEEEee
Confidence 457999999999999999999999999999999988754 369999999999999999999999998 888766
Q ss_pred ee
Q 025499 199 KR 200 (252)
Q Consensus 199 ~~ 200 (252)
..
T Consensus 80 ~~ 81 (85)
T 1x4e_A 80 SG 81 (85)
T ss_dssp SC
T ss_pred cC
Confidence 54
No 318
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.66 E-value=3.6e-16 Score=107.77 Aligned_cols=81 Identities=19% Similarity=0.223 Sum_probs=69.9
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCCcE-EEEEcCChhHHHHHHHHhcCccccCCCCCceeEe
Q 025499 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTY-GVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (252)
Q Consensus 120 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~-afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v 198 (252)
.......|||+||++.+|+++|.++|++||.|..|.+.... .++ |||+|.+.++|..|++.|||..|.+ ..+.|+|
T Consensus 24 ~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-~gfqAFVef~~~~~A~~Ai~~LnG~~i~g--~~~~LrI 100 (130)
T 3zzy_A 24 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-NQFQALLQYADPVSAQHAKLSLDGQNIYN--ACCTLRI 100 (130)
T ss_dssp -CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-TEEEEEEEESCHHHHHHHHHHHTTCEEET--TEEEEEE
T ss_pred CCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-CCcEEEEEECCHHHHHHHHHHcCCCeecC--CCcEEEE
Confidence 33455788999999999999999999999999999888754 355 9999999999999999999999982 1288999
Q ss_pred eecCC
Q 025499 199 KRYDR 203 (252)
Q Consensus 199 ~~~~~ 203 (252)
.+++.
T Consensus 101 ~~ak~ 105 (130)
T 3zzy_A 101 DFSKL 105 (130)
T ss_dssp EECSC
T ss_pred EecCC
Confidence 99874
No 319
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.66 E-value=4e-16 Score=119.98 Aligned_cols=78 Identities=17% Similarity=0.273 Sum_probs=72.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcC-ceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccC-CeeEEEEecC
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD-GCRLRVELAH 81 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G-~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~~~ 81 (252)
.++++|||+|||+.+|+++|+++|++|| .|..|.+..+ .+|||||+|.+.++|.+|+..|+|..+. |++|.|.|+.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS--STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC--CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 4579999999999999999999999999 9999999643 3789999999999999999999999999 9999999987
Q ss_pred CC
Q 025499 82 GG 83 (252)
Q Consensus 82 ~~ 83 (252)
+.
T Consensus 227 ~~ 228 (229)
T 2adc_A 227 ST 228 (229)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 320
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.66 E-value=1.7e-16 Score=119.66 Aligned_cols=77 Identities=13% Similarity=0.168 Sum_probs=68.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCce--eEEEEecC-CCCCeEEEEEECCHHHHHHHHHhcCCcccCCe----eEE
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRI--LDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGC----RLR 76 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v--~~v~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~----~i~ 76 (252)
.|+++|||+|||+.+|+++|+++|++||.| ..+.+..+ +..+|||||+|.+.++|.+|+..|||..|.|. ++.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~ 200 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYT 200 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceE
Confidence 467899999999999999999999999999 88888654 35569999999999999999999999999876 677
Q ss_pred EEec
Q 025499 77 VELA 80 (252)
Q Consensus 77 v~~~ 80 (252)
|+++
T Consensus 201 vk~~ 204 (205)
T 3tyt_A 201 LKLC 204 (205)
T ss_dssp CEEE
T ss_pred EEec
Confidence 7764
No 321
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.3e-16 Score=109.51 Aligned_cols=78 Identities=21% Similarity=0.208 Sum_probs=67.0
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeC-CC---CcEEEEEcCChhHHHHHHHHhcCccccCCCCCce
Q 025499 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD-SE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (252)
Q Consensus 120 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~-~~---~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~ 195 (252)
+.....+|||+|||+.+++++|+++|+.||.|..+.++.+ .. .|||||+|.+.++|..||. |||..|. |+.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~----gr~ 95 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMG----NRF 95 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCST----TSC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeEC----CcE
Confidence 3445689999999999999999999999999887444333 22 2699999999999999999 9999999 999
Q ss_pred eEeeecC
Q 025499 196 ITVKRYD 202 (252)
Q Consensus 196 i~v~~~~ 202 (252)
|.|..+.
T Consensus 96 i~V~~a~ 102 (124)
T 1wel_A 96 IQVHPIT 102 (124)
T ss_dssp BEEEEEC
T ss_pred EEEEECC
Confidence 9998876
No 322
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=8.3e-16 Score=105.42 Aligned_cols=79 Identities=15% Similarity=0.231 Sum_probs=71.5
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCCceeE
Q 025499 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (252)
Q Consensus 122 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~ 197 (252)
...++|||+|||..+++++|+++|+.||.|..|.+..++.+ |||||+|.+.++|..||.. ++..+. |+.|.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~----g~~l~ 99 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSID----GRVVE 99 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEET----TEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEEC----CEEEE
Confidence 34579999999999999999999999999999999987543 6999999999999999997 999999 99999
Q ss_pred eeecCCCC
Q 025499 198 VKRYDRSP 205 (252)
Q Consensus 198 v~~~~~~~ 205 (252)
|..+....
T Consensus 100 V~~a~~~~ 107 (116)
T 1x4b_A 100 PKRAVARE 107 (116)
T ss_dssp EECCSSCC
T ss_pred EEECCCCc
Confidence 99988443
No 323
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.66 E-value=1.1e-16 Score=105.75 Aligned_cols=76 Identities=12% Similarity=0.153 Sum_probs=68.2
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEe
Q 025499 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (252)
Q Consensus 123 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v 198 (252)
...+|||+|||..+++++|+++|++||.|..+.++.++.+ +||||+|.+.++|.+|+..|||..+. |+.|.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----gr~l~v 89 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG----SRKVKL 89 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeEC----CcEEEE
Confidence 3589999999999999999999999999988777765443 69999999999999999999999999 999999
Q ss_pred eecC
Q 025499 199 KRYD 202 (252)
Q Consensus 199 ~~~~ 202 (252)
..+.
T Consensus 90 ~~a~ 93 (95)
T 2ek1_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred Eecc
Confidence 8764
No 324
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.7e-16 Score=104.45 Aligned_cols=79 Identities=18% Similarity=0.187 Sum_probs=69.2
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceE-EEEeeCCC---CcEEEEEcCChhHHHHHHHHhcCccccCCCCCce
Q 025499 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF-AEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (252)
Q Consensus 120 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~-~~~~~~~~---~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~ 195 (252)
......+|||+|||+.+++++|+++|+.||.|.. +.+..+.. .|||||+|.+.++|..|+.. ++..+. ++.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~----gr~ 85 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIG----HRY 85 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSS----SSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhC----CcE
Confidence 3455689999999999999999999999999987 77776632 37999999999999999997 999999 999
Q ss_pred eEeeecCC
Q 025499 196 ITVKRYDR 203 (252)
Q Consensus 196 i~v~~~~~ 203 (252)
|.|..+..
T Consensus 86 i~v~~~~~ 93 (104)
T 1wg5_A 86 IEIFKSSR 93 (104)
T ss_dssp CEEEEECT
T ss_pred EEEEECCH
Confidence 99988764
No 325
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.66 E-value=5.1e-17 Score=114.22 Aligned_cols=79 Identities=15% Similarity=0.177 Sum_probs=68.8
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCC---CcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeE
Q 025499 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (252)
Q Consensus 121 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~---~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~ 197 (252)
.....+|||+|||+.+++++|+++|++|| |+.|.++.++. .|||||+|++.++|.+|| .+|+..|. ++.|.
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~----gR~i~ 116 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQ----HRYIE 116 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSS----SCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEEC----CEEEE
Confidence 34567999999999999999999999999 77999887754 369999999999999999 79999999 99999
Q ss_pred eeecCCCC
Q 025499 198 VKRYDRSP 205 (252)
Q Consensus 198 v~~~~~~~ 205 (252)
|..+....
T Consensus 117 V~~a~~~~ 124 (139)
T 2hgn_A 117 LFLNSTTG 124 (139)
T ss_dssp CEECCCSC
T ss_pred EEECCCCC
Confidence 98877543
No 326
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.65 E-value=2e-16 Score=101.35 Aligned_cols=70 Identities=14% Similarity=0.256 Sum_probs=62.5
Q ss_pred cEEEEeCCCCCC------CHHHHHHHHHHhCCceEEEEeeCC--CCcEEEEEcCChhHHHHHHHHhcCccccCCCCCc-e
Q 025499 125 YRVIVRGLPSSA------SWQDLKDHMRKAGDVCFAEVSRDS--EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG-R 195 (252)
Q Consensus 125 ~~l~v~nl~~~~------t~~~l~~~f~~~g~v~~~~~~~~~--~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~-~ 195 (252)
++|||+|||..+ ++++|+++|++||.|..+.+.... ..|||||+|.+.++|..|+..|||..+. |+ .
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~----g~~~ 77 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD----KQHT 77 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCS----SSSC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccC----Ccee
Confidence 689999999999 779999999999999999987432 2379999999999999999999999999 88 7
Q ss_pred eEe
Q 025499 196 ITV 198 (252)
Q Consensus 196 i~v 198 (252)
|+|
T Consensus 78 l~V 80 (81)
T 2krb_A 78 FRV 80 (81)
T ss_dssp CCC
T ss_pred EEe
Confidence 765
No 327
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.65 E-value=2.9e-16 Score=99.02 Aligned_cols=71 Identities=18% Similarity=0.285 Sum_probs=65.0
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeec
Q 025499 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (252)
Q Consensus 126 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (252)
+|||+|||..+++++|+++|++||.|..+.+..++.+ |||||+|.+.++|..|++ |+|..+. |+.|.|+.+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~----g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEIN----NKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSS----SCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEEC----CEEEEEEeC
Confidence 4899999999999999999999999999999877643 699999999999999998 9999999 999998754
No 328
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=9.3e-16 Score=98.16 Aligned_cols=71 Identities=17% Similarity=0.285 Sum_probs=63.4
Q ss_pred cEEEEeCCCCCCCHHH----HHHHHHHhC-CceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEee
Q 025499 125 YRVIVRGLPSSASWQD----LKDHMRKAG-DVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (252)
Q Consensus 125 ~~l~v~nl~~~~t~~~----l~~~f~~~g-~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~ 199 (252)
+.|||.|||..+++++ |.++|++|| +|..|. .|+|||.|.+.++|..|++.|+|..+. |+.|+|.
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt------gG~AfV~F~~~esA~~A~~~l~G~~l~----gr~i~v~ 79 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT------GCSAILRFINQDSAERAQKRMENEDVF----GNRIIVS 79 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC------TTCEEEEESSHHHHHHHHHHHTTCCSS----SSCCEEE
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe------cCEEEEEECCHHHHHHHHHHhcCCccC----CceEEEE
Confidence 3499999999999988 558999995 999982 289999999999999999999999999 9999999
Q ss_pred ecCCCC
Q 025499 200 RYDRSP 205 (252)
Q Consensus 200 ~~~~~~ 205 (252)
+++..+
T Consensus 80 ~A~~~s 85 (96)
T 2diu_A 80 FTPKNR 85 (96)
T ss_dssp SSCCSC
T ss_pred ecCCCc
Confidence 998543
No 329
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.65 E-value=7.5e-16 Score=103.64 Aligned_cols=77 Identities=13% Similarity=0.252 Sum_probs=68.6
Q ss_pred CccEEEEeCCCCCC------CHHHHHHHHHHhCCceEEEEeeCC--CCcEEEEEcCChhHHHHHHHHhcCccccCCCCCc
Q 025499 123 SEYRVIVRGLPSSA------SWQDLKDHMRKAGDVCFAEVSRDS--EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (252)
Q Consensus 123 ~~~~l~v~nl~~~~------t~~~l~~~f~~~g~v~~~~~~~~~--~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~ 194 (252)
..++|||+|||..+ ++++|+++|++||.|..+.+.... ..|||||+|.+.++|..|+..|||..+. |+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~----g~ 89 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD----KQ 89 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS----TT
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC----CC
Confidence 45799999999999 789999999999999999888322 2379999999999999999999999999 98
Q ss_pred -eeEeeecCC
Q 025499 195 -RITVKRYDR 203 (252)
Q Consensus 195 -~i~v~~~~~ 203 (252)
.|.|..+..
T Consensus 90 ~~l~V~~a~~ 99 (105)
T 2nlw_A 90 HTFRVNLFTD 99 (105)
T ss_dssp CEEEEECSCC
T ss_pred ceEEEEEcch
Confidence 999988763
No 330
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=5.3e-16 Score=98.36 Aligned_cols=72 Identities=18% Similarity=0.286 Sum_probs=65.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCC----CcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeee
Q 025499 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (252)
Q Consensus 125 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~ 200 (252)
++|||+|||..+++++|+++|++||.|..+.+..++. .|||||+|.+.++|..|+..++ ..+. |+.|.|+.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~----g~~l~v~~ 75 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELD----SKTIDPKV 75 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCS----SCCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccC----CEEEEEEe
Confidence 4799999999999999999999999999999988764 3699999999999999999999 8888 99998876
Q ss_pred c
Q 025499 201 Y 201 (252)
Q Consensus 201 ~ 201 (252)
+
T Consensus 76 a 76 (77)
T 1uaw_A 76 A 76 (77)
T ss_dssp C
T ss_pred c
Confidence 4
No 331
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.6e-15 Score=99.90 Aligned_cols=73 Identities=15% Similarity=0.249 Sum_probs=64.8
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCCc-EEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeecC
Q 025499 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT-YGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (252)
Q Consensus 124 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~-~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~~ 202 (252)
..+|||+|||..+++++|+++|+.||.|..| ..+..++ ||||+|.+.++|..|+. |+|..+. |+.|.|..+.
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~----g~~l~V~~a~ 80 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLG----GHRLRVRPRE 80 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCCEEEEEESSHHHHHHHHT-CSCCEET----TEECCCBCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEEC----CEEEEEEECC
Confidence 4699999999999999999999999999988 3333333 99999999999999999 9999999 9999998776
Q ss_pred C
Q 025499 203 R 203 (252)
Q Consensus 203 ~ 203 (252)
.
T Consensus 81 ~ 81 (94)
T 2e5g_A 81 Q 81 (94)
T ss_dssp C
T ss_pred c
Confidence 3
No 332
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.3e-15 Score=101.28 Aligned_cols=78 Identities=18% Similarity=0.304 Sum_probs=69.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCC-ceEEEEe-eCCC----CcEEEEEcCChhHHHHHHHHhc--CccccCCCCCc
Q 025499 123 SEYRVIVRGLPSSASWQDLKDHMRKAGD-VCFAEVS-RDSE----GTYGVVDYTNPEDMKYAIRKLD--DTEFRNPWARG 194 (252)
Q Consensus 123 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~-v~~~~~~-~~~~----~~~afv~f~~~~~a~~a~~~l~--g~~~~~~~~g~ 194 (252)
+.++|||+|||..+++++|+++|..||. |..+.+. .+.. .|||||+|.+.++|..|+..|+ +..+. |+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~----g~ 82 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLW----GH 82 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBT----TB
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceec----CC
Confidence 4589999999999999999999999998 9999888 4433 3799999999999999999996 58888 99
Q ss_pred eeEeeecCCC
Q 025499 195 RITVKRYDRS 204 (252)
Q Consensus 195 ~i~v~~~~~~ 204 (252)
.|.|..+...
T Consensus 83 ~l~V~~a~~~ 92 (109)
T 2dis_A 83 QIAVDWAEPE 92 (109)
T ss_dssp CCEEEESCSS
T ss_pred eEEEEEcCCC
Confidence 9999998843
No 333
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.9e-16 Score=105.42 Aligned_cols=77 Identities=13% Similarity=0.105 Sum_probs=69.6
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCc-eEEEEeeCCC---CcEEEEEcCChhHHHHHHHHhcCccccCCCCCcee
Q 025499 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDV-CFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (252)
Q Consensus 121 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v-~~~~~~~~~~---~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i 196 (252)
.....+|||+|||+.+++++|+++|+.||.| ..|.++.+.. .|||||+|.+.++|..||.. |+..|. |+.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~----gr~i 86 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLN----GREA 86 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEET----TEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccC----CeEE
Confidence 3456899999999999999999999999999 8899887763 37999999999999999997 999999 9999
Q ss_pred EeeecC
Q 025499 197 TVKRYD 202 (252)
Q Consensus 197 ~v~~~~ 202 (252)
.|..+.
T Consensus 87 ~v~~a~ 92 (114)
T 2cpy_A 87 FVHVVT 92 (114)
T ss_dssp EEEEEC
T ss_pred EEEECC
Confidence 999887
No 334
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.64 E-value=1.1e-15 Score=103.46 Aligned_cols=79 Identities=18% Similarity=0.239 Sum_probs=69.0
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCC----CcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeE
Q 025499 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (252)
Q Consensus 122 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~ 197 (252)
...++|||+|||..+++++|+++|+.||.|..|.+..+.. .|||||+|.+.++|..|+..+ +..+. |+.|.
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~----g~~l~ 97 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELD----SKTID 97 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEET----TEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCC----CEEEE
Confidence 4567999999999999999999999999999999998764 369999999999999999976 58888 99999
Q ss_pred eeecCCCC
Q 025499 198 VKRYDRSP 205 (252)
Q Consensus 198 v~~~~~~~ 205 (252)
|..+...+
T Consensus 98 V~~a~~~~ 105 (109)
T 2rs2_A 98 PKVAFPRR 105 (109)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 99987443
No 335
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=5.5e-15 Score=97.72 Aligned_cols=77 Identities=21% Similarity=0.302 Sum_probs=65.0
Q ss_pred CCCcEEEEcCCC-------CCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEE
Q 025499 4 RFSRTIYVGNLP-------SDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (252)
Q Consensus 4 ~~~~~l~v~~lp-------~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~ 76 (252)
...+.|.|.-.+ ..+|+++|+++|++||+|.+|.|. +.++|||||+|.+.++|..|+..+++ +.|++|.
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~--~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~ 83 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS--SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLK 83 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE--SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCE
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc--cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEE
Confidence 345667776554 458999999999999999999997 46799999999999999999997554 6799999
Q ss_pred EEecCCCC
Q 025499 77 VELAHGGS 84 (252)
Q Consensus 77 v~~~~~~~ 84 (252)
|.|+.+.+
T Consensus 84 V~~a~~~~ 91 (100)
T 2d9o_A 84 ISWLEGQP 91 (100)
T ss_dssp EECSSCCC
T ss_pred EEEccCCC
Confidence 99988763
No 336
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.63 E-value=8.9e-16 Score=101.82 Aligned_cols=80 Identities=14% Similarity=0.176 Sum_probs=70.6
Q ss_pred CCCccEEEEeCCCCCCCHHHHH----HHHHHhCCceEEEEeeC-CCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCce
Q 025499 121 RHSEYRVIVRGLPSSASWQDLK----DHMRKAGDVCFAEVSRD-SEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (252)
Q Consensus 121 ~~~~~~l~v~nl~~~~t~~~l~----~~f~~~g~v~~~~~~~~-~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~ 195 (252)
..+..+|||+|||..+++++|+ ++|++||.|..+.+... ...|||||+|.+.++|..|+..|||..+. |+.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 80 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFY----DKP 80 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEET----TEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEEC----CcE
Confidence 3456899999999999999999 99999999999988742 22379999999999999999999999998 999
Q ss_pred eEeeecCCC
Q 025499 196 ITVKRYDRS 204 (252)
Q Consensus 196 i~v~~~~~~ 204 (252)
|.|..+...
T Consensus 81 l~v~~a~~~ 89 (97)
T 1nu4_A 81 MRIQYAKTD 89 (97)
T ss_dssp CEEEECSSC
T ss_pred EEEEEccCC
Confidence 999998754
No 337
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=5.4e-16 Score=102.67 Aligned_cols=78 Identities=8% Similarity=0.170 Sum_probs=68.5
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeee
Q 025499 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (252)
Q Consensus 121 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~ 200 (252)
..+..+|||+|||..+++++|+++|+.||.|..+ .......|||||+|.+.++|..|+..|+|..+. |+.|.|..
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID----GRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEET----TEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CeEEEEEE
Confidence 3456899999999999999999999999998877 232333479999999999999999999999999 99999999
Q ss_pred cCC
Q 025499 201 YDR 203 (252)
Q Consensus 201 ~~~ 203 (252)
+..
T Consensus 88 a~~ 90 (96)
T 1fjc_A 88 TGE 90 (96)
T ss_dssp CSS
T ss_pred cCC
Confidence 874
No 338
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.63 E-value=1.5e-15 Score=98.62 Aligned_cols=72 Identities=17% Similarity=0.384 Sum_probs=66.0
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHh----C-------CceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCC
Q 025499 122 HSEYRVIVRGLPSSASWQDLKDHMRKA----G-------DVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNP 190 (252)
Q Consensus 122 ~~~~~l~v~nl~~~~t~~~l~~~f~~~----g-------~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~ 190 (252)
....+|||+|||..+++++|+++|+.| | .|..+.+..+ .+||||+|.+.++|..|+ .|||..+.
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~--kg~afV~f~~~~~a~~A~-~l~g~~~~-- 78 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--KNFAFLEFRSVDETTQAM-AFDGIIFQ-- 78 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS--SSEEEEEESSHHHHHHHG-GGTTCEET--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC--CcEEEEEcCCHHHHHHHH-hcCCCEEC--
Confidence 356899999999999999999999999 8 8999988866 489999999999999999 99999999
Q ss_pred CCCceeEeee
Q 025499 191 WARGRITVKR 200 (252)
Q Consensus 191 ~~g~~i~v~~ 200 (252)
|+.|.|..
T Consensus 79 --g~~l~V~r 86 (87)
T 2hzc_A 79 --GQSLKIRR 86 (87)
T ss_dssp --TEECEEEC
T ss_pred --CeEEEEeC
Confidence 99998874
No 339
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=3.1e-15 Score=100.16 Aligned_cols=80 Identities=23% Similarity=0.364 Sum_probs=67.9
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCCce
Q 025499 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (252)
Q Consensus 120 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~ 195 (252)
...+.++|||+|||..+++++|+++|+.|+ .+.++.+..+ +||||+|.+.++|..|+..|||..|. ++.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 83 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID----GNK 83 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET----TEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeEC----CeE
Confidence 345568999999999999999999999774 5555555433 69999999999999999999999999 999
Q ss_pred eEeeecCCCCC
Q 025499 196 ITVKRYDRSPS 206 (252)
Q Consensus 196 i~v~~~~~~~~ 206 (252)
|.|..+.....
T Consensus 84 l~V~~a~~~~~ 94 (102)
T 2fc8_A 84 VTLDWAKPKGE 94 (102)
T ss_dssp CEEEECCCCCS
T ss_pred EEEEEecCCCC
Confidence 99999985443
No 340
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.63 E-value=2.8e-16 Score=104.81 Aligned_cols=79 Identities=16% Similarity=0.397 Sum_probs=67.9
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCC-----CCcEEEEEcCChhHHHHHHHHhcCccccCCCCC
Q 025499 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS-----EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (252)
Q Consensus 119 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~-----~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g 193 (252)
......++|||+|||..+++++|+++|+.|| |..+.+..+. ..|||||+|.+.++|..|+ .|+|..+. |
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~----g 87 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG----N 87 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBT----T
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEEC----C
Confidence 3445568999999999999999999999999 9999998876 2379999999999999999 89999999 9
Q ss_pred ceeEeeecCC
Q 025499 194 GRITVKRYDR 203 (252)
Q Consensus 194 ~~i~v~~~~~ 203 (252)
+.|.|..+..
T Consensus 88 ~~l~V~~a~~ 97 (100)
T 2j76_E 88 RRIRVDVADQ 97 (100)
T ss_dssp BCCCCEECCC
T ss_pred eEEEEEeccC
Confidence 9999998874
No 341
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.63 E-value=9.7e-16 Score=122.96 Aligned_cols=77 Identities=14% Similarity=0.245 Sum_probs=67.9
Q ss_pred CCCCCcEEEEcC--CCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccC---Ce--e
Q 025499 2 SGRFSRTIYVGN--LPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD---GC--R 74 (252)
Q Consensus 2 ~~~~~~~l~v~~--lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~---g~--~ 74 (252)
++.|+.+|||+| |+..+|+++|+++|++||+|.+|.+.. .+|||||+|.+.++|++|++.|||..+. |+ +
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT---TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 468999999999 578999999999999999999987753 4899999999999999999999998873 45 6
Q ss_pred EEEEecC
Q 025499 75 LRVELAH 81 (252)
Q Consensus 75 i~v~~~~ 81 (252)
|.|.++.
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 8888874
No 342
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.63 E-value=4.7e-16 Score=101.69 Aligned_cols=74 Identities=27% Similarity=0.362 Sum_probs=67.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCC----CcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeee
Q 025499 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (252)
Q Consensus 125 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~ 200 (252)
++|||+|||..+++++|+++|+.||.|..+.+..+.. .|||||+|.+.+ |..|+..|||..+. |+.|.|..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~----g~~l~V~~ 76 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFM----GRTIRVTE 76 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCS----SSSCSEEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEEC----CeEEEEEE
Confidence 4899999999999999999999999999999988754 369999999999 99999999999999 99999999
Q ss_pred cCC
Q 025499 201 YDR 203 (252)
Q Consensus 201 ~~~ 203 (252)
+..
T Consensus 77 a~~ 79 (90)
T 2ki2_A 77 ANP 79 (90)
T ss_dssp C--
T ss_pred cCC
Confidence 874
No 343
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=2.9e-15 Score=100.11 Aligned_cols=77 Identities=16% Similarity=0.232 Sum_probs=66.3
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEee----CCCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeE
Q 025499 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSR----DSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (252)
Q Consensus 122 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~----~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~ 197 (252)
....+|||+|||..+++++|+++|+.||.|.. .++. ....|||||+|.+.++|..|++ |||..+. |+.|.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~----g~~l~ 88 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVF----GNEIK 88 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBT----TBCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEEC----CcEEE
Confidence 35689999999999999999999999998766 2222 2344799999999999999999 9999999 99999
Q ss_pred eeecCCC
Q 025499 198 VKRYDRS 204 (252)
Q Consensus 198 v~~~~~~ 204 (252)
|..+...
T Consensus 89 V~~a~~~ 95 (101)
T 1fj7_A 89 LEKPKGR 95 (101)
T ss_dssp EECCSCC
T ss_pred EEEcCCC
Confidence 9998743
No 344
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.62 E-value=4e-16 Score=106.48 Aligned_cols=79 Identities=24% Similarity=0.268 Sum_probs=68.6
Q ss_pred CCCcEEEEcCCCC--C---CCHHHHHHHHhhcCceeEEEEecC-------CCCCeEEEEEECCHHHHHHHHHhcCCcccC
Q 025499 4 RFSRTIYVGNLPS--D---IREYEVEDLFYKYGRILDIELKIP-------PRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (252)
Q Consensus 4 ~~~~~l~v~~lp~--~---~t~~~l~~~f~~~G~v~~v~~~~~-------~~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 71 (252)
.|+++|+|.|+-. + -.++||++.|++||+|.+|.|..+ +.++|+|||+|.+.++|.+|+..|||..|+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 5899999999942 2 237899999999999999999543 235699999999999999999999999999
Q ss_pred CeeEEEEecCC
Q 025499 72 GCRLRVELAHG 82 (252)
Q Consensus 72 g~~i~v~~~~~ 82 (252)
|+.|.|.++..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999854
No 345
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.62 E-value=7.3e-16 Score=104.07 Aligned_cols=77 Identities=10% Similarity=0.148 Sum_probs=69.5
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCC---ceEEEEeeCCC---CcEEEEEcCChhHHHHHHHHhcCccccCCCCCc
Q 025499 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGD---VCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (252)
Q Consensus 121 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~---v~~~~~~~~~~---~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~ 194 (252)
....++|||+|||+.+++++|+++|+.||. |..|.+..+.. .|||||+|.+.++|..|+. +|+..+. |+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~----gr 82 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMG----QR 82 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSS----SS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeC----Ce
Confidence 345689999999999999999999999987 89999988764 3699999999999999999 9999999 99
Q ss_pred eeEeeecC
Q 025499 195 RITVKRYD 202 (252)
Q Consensus 195 ~i~v~~~~ 202 (252)
.|.|..+.
T Consensus 83 ~i~V~~a~ 90 (107)
T 2lmi_A 83 YVEVYEIN 90 (107)
T ss_dssp CCCCEECC
T ss_pred EEEEEECC
Confidence 99998876
No 346
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.61 E-value=1.4e-15 Score=98.95 Aligned_cols=74 Identities=20% Similarity=0.336 Sum_probs=68.1
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeecC
Q 025499 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (252)
Q Consensus 123 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~~ 202 (252)
...+|||+|||..+++++|+++|++| .|..+.+. ...|||||+|.+.++|..|++.|||..+. |+.|.|..+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFR----GKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEET----TEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeEC----CcEEEEEEcC
Confidence 34799999999999999999999999 99999885 44589999999999999999999999999 9999999987
Q ss_pred C
Q 025499 203 R 203 (252)
Q Consensus 203 ~ 203 (252)
.
T Consensus 77 ~ 77 (88)
T 1wg1_A 77 T 77 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 347
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.61 E-value=2.3e-15 Score=115.30 Aligned_cols=76 Identities=13% Similarity=0.162 Sum_probs=69.9
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhC--CceEEEEeeCCCC----cEEEEEcCChhHHHHHHHHhcCccccCCCCCcee
Q 025499 123 SEYRVIVRGLPSSASWQDLKDHMRKAG--DVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (252)
Q Consensus 123 ~~~~l~v~nl~~~~t~~~l~~~f~~~g--~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i 196 (252)
..++|||+||++.+++++|+++|+.|| .|+.|.|+.++.+ |||||+|.+.++|.+||..|||..|. ++.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~----Gr~l 142 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH----GQNP 142 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBT----TBCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeEC----CEEe
Confidence 457999999999999999999999999 9999999988654 59999999999999999999999999 9999
Q ss_pred EeeecC
Q 025499 197 TVKRYD 202 (252)
Q Consensus 197 ~v~~~~ 202 (252)
.|..+.
T Consensus 143 ~V~~a~ 148 (229)
T 3q2s_C 143 VVTPVN 148 (229)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999875
No 348
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.61 E-value=3.5e-15 Score=106.15 Aligned_cols=79 Identities=13% Similarity=0.118 Sum_probs=68.5
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCceE--------EEEe-eCCCCcEEEEEcCChhHHHHHHHHhcCccccCCCC
Q 025499 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF--------AEVS-RDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWA 192 (252)
Q Consensus 122 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~--------~~~~-~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~ 192 (252)
.+.++|||+|||..+++++|.++|+.||.|.. +.+. .....|||||+|.+.++|..|+..|||..+.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~---- 118 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF---- 118 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEET----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC----
Confidence 34579999999999999999999999998875 3333 3344579999999999999999999999999
Q ss_pred CceeEeeecCCC
Q 025499 193 RGRITVKRYDRS 204 (252)
Q Consensus 193 g~~i~v~~~~~~ 204 (252)
|+.|.|..++..
T Consensus 119 g~~l~V~~a~~~ 130 (143)
T 3egn_A 119 GKPMVVQFARSA 130 (143)
T ss_dssp TEECEEEECCCS
T ss_pred CcEEEEEECCCC
Confidence 999999999743
No 349
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.61 E-value=1.3e-15 Score=95.97 Aligned_cols=71 Identities=15% Similarity=0.284 Sum_probs=63.9
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCC----CcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeec
Q 025499 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (252)
Q Consensus 126 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (252)
+|||+|||..+++++|+++|++||.|..+.+..++. .|||||+|.+.++|..|+.. ++..+. |+.|.|+.+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~----g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVG----LSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBT----TBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeEC----CEEEEEEEC
Confidence 589999999999999999999999999999987654 37999999999999999994 888888 999888753
No 350
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.60 E-value=5.1e-15 Score=108.83 Aligned_cols=78 Identities=14% Similarity=0.158 Sum_probs=71.5
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCC---CcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeE
Q 025499 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (252)
Q Consensus 121 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~---~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~ 197 (252)
..+.++|||+|||..+++++|+++|+.||.|+.|.+..+.. .+||||+|.+.++|..|+..|||..+. |+.|.
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~----Gr~l~ 160 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD----GRPMD 160 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCS----SSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEEC----CEEEE
Confidence 34568999999999999999999999999999999988752 379999999999999999999999999 99999
Q ss_pred eeecC
Q 025499 198 VKRYD 202 (252)
Q Consensus 198 v~~~~ 202 (252)
|..+.
T Consensus 161 V~~a~ 165 (177)
T 2f3j_A 161 IQLVA 165 (177)
T ss_dssp EEEES
T ss_pred EEEec
Confidence 98876
No 351
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.60 E-value=5.2e-15 Score=101.91 Aligned_cols=77 Identities=16% Similarity=0.204 Sum_probs=68.9
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeec
Q 025499 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (252)
Q Consensus 122 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~ 201 (252)
...++|||+|+ ++++++|+++|+.||.|..|.+. ...|||||+|.+.++|..|+..|||..+. |+.|.|..+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~----g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVE----SVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCBCS----SCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEEC----CeEEEEEEe
Confidence 45689999996 69999999999999999999986 34489999999999999999999999998 999999998
Q ss_pred CCCCC
Q 025499 202 DRSPS 206 (252)
Q Consensus 202 ~~~~~ 206 (252)
...+.
T Consensus 109 ~~~~~ 113 (121)
T 2bz2_A 109 RKQPM 113 (121)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 85443
No 352
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.8e-15 Score=103.12 Aligned_cols=77 Identities=18% Similarity=0.190 Sum_probs=67.6
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCc----eEEEEeeCCCC---cEEEEEcCChhHHHHHHHHhcCccccCCCCC
Q 025499 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDV----CFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (252)
Q Consensus 121 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v----~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g 193 (252)
.....+|||+|||+.+|+++|+++|+.||.| ..|.++.+..+ |||||+|.+.++|.+||.. |+..+. +
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~----g 94 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLG----K 94 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESS----S
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeC----C
Confidence 3456899999999999999999999999975 67888876533 6999999999999999996 999998 9
Q ss_pred ceeEeeecC
Q 025499 194 GRITVKRYD 202 (252)
Q Consensus 194 ~~i~v~~~~ 202 (252)
+.|.|..+.
T Consensus 95 R~i~V~~a~ 103 (123)
T 2dha_A 95 RYIELFRST 103 (123)
T ss_dssp CEECCEEEC
T ss_pred eEEEEEECC
Confidence 999998765
No 353
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.60 E-value=1.9e-15 Score=104.16 Aligned_cols=77 Identities=17% Similarity=0.219 Sum_probs=66.5
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCce--EEEEeeCCCC---cEEEEEcCChhHHHHHHHHhcCccccCCCCCc
Q 025499 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVC--FAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (252)
Q Consensus 120 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~--~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~ 194 (252)
......+|||+|||+.+++++|+++|+.| .|+ .|.+..++.+ |||||+|.+.++|.+||. +++..|. |+
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~----gR 111 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIG----HR 111 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBT----TB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEEC----CE
Confidence 33456799999999999999999999999 677 8888876543 799999999999999998 4778888 99
Q ss_pred eeEeeecC
Q 025499 195 RITVKRYD 202 (252)
Q Consensus 195 ~i~v~~~~ 202 (252)
.|.|..+.
T Consensus 112 ~I~V~~a~ 119 (126)
T 2hgm_A 112 YIEVFKSS 119 (126)
T ss_dssp CCCCEEEC
T ss_pred EEEEEECC
Confidence 99987764
No 354
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.60 E-value=4.1e-16 Score=104.36 Aligned_cols=70 Identities=23% Similarity=0.397 Sum_probs=59.3
Q ss_pred EcCCCCCCCHHHHHHHH------------hhcCceeEEEEecC--CCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEE
Q 025499 11 VGNLPSDIREYEVEDLF------------YKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (252)
Q Consensus 11 v~~lp~~~t~~~l~~~f------------~~~G~v~~v~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~ 76 (252)
+.+||..+++++|.+.| ++||+|.+|.+..+ +.++|||||+|.+.++|.+|+..|||..++|++|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 34455556777776666 99999999999653 56799999999999999999999999999999999
Q ss_pred EEec
Q 025499 77 VELA 80 (252)
Q Consensus 77 v~~~ 80 (252)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 355
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.58 E-value=7e-15 Score=115.23 Aligned_cols=80 Identities=20% Similarity=0.187 Sum_probs=71.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEec--CCCCCeEEEEEECCHHHHHHHHHhcC-CcccC---CeeEEE
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRD-GYNFD---GCRLRV 77 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~-~~~~~---g~~i~v 77 (252)
.++++|||+|||+.+|+++|.++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..|+ +..+. +++|.|
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4678999999999999999999999999999999854 46779999999999999999999995 44444 999999
Q ss_pred EecCCC
Q 025499 78 ELAHGG 83 (252)
Q Consensus 78 ~~~~~~ 83 (252)
.++...
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 999765
No 356
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.57 E-value=1.4e-14 Score=98.13 Aligned_cols=78 Identities=14% Similarity=0.115 Sum_probs=67.2
Q ss_pred CCCcEEEEcCCCCCC----------CHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCe
Q 025499 4 RFSRTIYVGNLPSDI----------REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC 73 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~----------t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~ 73 (252)
-|+++|.|.|+=... .++||++.|++||.|.+|.+..+ .++|+|||+|.+.++|.+|+..|||..++|+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~-~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN-SAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT-CTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC-CCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 478899999984322 24678999999999999998554 3589999999999999999999999999999
Q ss_pred eEEEEecCC
Q 025499 74 RLRVELAHG 82 (252)
Q Consensus 74 ~i~v~~~~~ 82 (252)
.|.|.++..
T Consensus 84 ~i~v~~~~~ 92 (114)
T 3s6e_A 84 MITAAYVPL 92 (114)
T ss_dssp ECEEEEECH
T ss_pred EEEEEEEcH
Confidence 999999853
No 357
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.35 E-value=1.9e-16 Score=108.62 Aligned_cols=80 Identities=23% Similarity=0.331 Sum_probs=71.7
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCceE--------EEEeeCCC----CcEEEEEcCChhHHHHHHHHhcCccccCC
Q 025499 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCF--------AEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNP 190 (252)
Q Consensus 123 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~--------~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~ 190 (252)
+..+|||+|||..+++++|+++|+.||.|.. +.+..++. .+||||+|.+.++|..|+..|||..+.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-- 83 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS-- 83 (116)
Confidence 4579999999999999999999999999998 78877644 369999999999999999999999999
Q ss_pred CCCceeEeeecCCCCC
Q 025499 191 WARGRITVKRYDRSPS 206 (252)
Q Consensus 191 ~~g~~i~v~~~~~~~~ 206 (252)
|+.|.|..+...+.
T Consensus 84 --g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 --GNPIKVSFATRRAD 97 (116)
Confidence 99999999885443
No 358
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.56 E-value=6.7e-15 Score=98.47 Aligned_cols=76 Identities=17% Similarity=0.312 Sum_probs=68.1
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC---cEEEEEcCChhHHHHHHHHhcCccccCCCCCceeE
Q 025499 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (252)
Q Consensus 121 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~ 197 (252)
....++|||+|||..+++++|.++|+.||.|..+.+..+..+ |||||+|.+.++|..|+. ++..+. |+.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~----g~~l~ 79 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFH----GKKLK 79 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEET----TEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeEC----CEEEE
Confidence 345689999999999999999999999999999999988632 699999999999999999 888888 88888
Q ss_pred eeecC
Q 025499 198 VKRYD 202 (252)
Q Consensus 198 v~~~~ 202 (252)
|..+.
T Consensus 80 v~~a~ 84 (102)
T 2xs2_A 80 LGPAI 84 (102)
T ss_dssp EEEEE
T ss_pred EEECC
Confidence 87766
No 359
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.56 E-value=7.4e-15 Score=95.52 Aligned_cols=77 Identities=10% Similarity=0.167 Sum_probs=62.0
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEee
Q 025499 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (252)
Q Consensus 120 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~ 199 (252)
...+..+|||+|||+.+++++|+++|++||.|..+.++.+ ..|||||+|++.++|.. +++..+. ..++.|.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~~----~~~~~~~--~~g~~v~v~ 79 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQS----LCGEDLI--IKGISVHIS 79 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHHH----HTTCEEE--ETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHHH----HcCCCcc--cCCEEEEEE
Confidence 3456689999999999999999999999999999999875 45899999999999983 5666543 228889888
Q ss_pred ecCC
Q 025499 200 RYDR 203 (252)
Q Consensus 200 ~~~~ 203 (252)
.+..
T Consensus 80 ~a~~ 83 (89)
T 3d2w_A 80 NAEP 83 (89)
T ss_dssp ECC-
T ss_pred EcCC
Confidence 8763
No 360
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.55 E-value=2.2e-14 Score=97.11 Aligned_cols=75 Identities=15% Similarity=0.165 Sum_probs=67.4
Q ss_pred cEEEEeCC----CCCCCHHHHHHHHHHhCCceEEEEeeCCCC----cEEEEEcCC----hhH----HHHHHH--HhcCcc
Q 025499 125 YRVIVRGL----PSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTN----PED----MKYAIR--KLDDTE 186 (252)
Q Consensus 125 ~~l~v~nl----~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~----~~~----a~~a~~--~l~g~~ 186 (252)
..|||+|| |+.+++++|+++|+.||.|..+.++.|+.+ |||||+|.+ +++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 999999999999999999999999999988 599999996 444 888988 789999
Q ss_pred ccCCCCCceeEeeecCC
Q 025499 187 FRNPWARGRITVKRYDR 203 (252)
Q Consensus 187 ~~~~~~g~~i~v~~~~~ 203 (252)
|. |+.|+|...+.
T Consensus 83 I~----Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IM----GFKFEVILNKH 95 (136)
T ss_dssp ET----TEEEEEEECCT
T ss_pred ec----CcEEEEEECcc
Confidence 99 99999998763
No 361
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.2e-13 Score=93.84 Aligned_cols=79 Identities=23% Similarity=0.352 Sum_probs=67.7
Q ss_pred CCccEEEEeCCCCCCC-----------HHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCC
Q 025499 122 HSEYRVIVRGLPSSAS-----------WQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNP 190 (252)
Q Consensus 122 ~~~~~l~v~nl~~~~t-----------~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~ 190 (252)
.+..+|+|.||..... +++|+++|++||.|..|.+......|||||+|.+.++|..|+..|||..+.
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~-- 90 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG-- 90 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET--
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC--
Confidence 4568999999955443 589999999999999997754445589999999999999999999999999
Q ss_pred CCCceeEeeecCCC
Q 025499 191 WARGRITVKRYDRS 204 (252)
Q Consensus 191 ~~g~~i~v~~~~~~ 204 (252)
|+.|.|..+...
T Consensus 91 --gr~l~v~~a~~~ 102 (112)
T 2dit_A 91 --GRQITAQAWDGT 102 (112)
T ss_dssp --TEECEEEECCSC
T ss_pred --CcEEEEEEeCCC
Confidence 999999998743
No 362
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=9.2e-15 Score=95.04 Aligned_cols=75 Identities=11% Similarity=0.154 Sum_probs=62.1
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeecC
Q 025499 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (252)
Q Consensus 123 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~~ 202 (252)
..++|||+|||..+++++|+++|++||.|..+.+..+ ..|||||+|.+.++|+. +++..+. ..++.|.|..+.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~----~~~~~~~--~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQS----LCGEDLI--IKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHH----TTTCEEE--ETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHH----HhcCCce--eCCEEEEEEecC
Confidence 4579999999999999999999999999999999875 45799999999999975 4454442 128889888877
Q ss_pred CC
Q 025499 203 RS 204 (252)
Q Consensus 203 ~~ 204 (252)
..
T Consensus 77 ~~ 78 (88)
T 1wf0_A 77 PK 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 363
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.53 E-value=1.1e-13 Score=103.09 Aligned_cols=76 Identities=17% Similarity=0.291 Sum_probs=67.1
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC---cEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEee
Q 025499 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (252)
Q Consensus 123 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~ 199 (252)
..++|||+|||..+++++|+++|+.||.|..|.+..+..+ |||||+|++.++|..|+..++ ..+. |+.|.|.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~----Gr~l~V~ 182 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYK----ETDLLIL 182 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEET----TEECEEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeEC----CEEEEEE
Confidence 3579999999999999999999999999999999886543 799999999999999998665 4788 9999998
Q ss_pred ecCC
Q 025499 200 RYDR 203 (252)
Q Consensus 200 ~~~~ 203 (252)
....
T Consensus 183 ~~~~ 186 (193)
T 2voo_A 183 FKDD 186 (193)
T ss_dssp ETTT
T ss_pred EhHH
Confidence 7663
No 364
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.52 E-value=7.4e-14 Score=93.40 Aligned_cols=77 Identities=16% Similarity=0.143 Sum_probs=67.3
Q ss_pred CCccEEEEeCCCC-----CCCHHHHHHHHHHhCCceEEEEeeCC-----CCcEEEEEcCChhHHHHHHHHhcCccccCCC
Q 025499 122 HSEYRVIVRGLPS-----SASWQDLKDHMRKAGDVCFAEVSRDS-----EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPW 191 (252)
Q Consensus 122 ~~~~~l~v~nl~~-----~~t~~~l~~~f~~~g~v~~~~~~~~~-----~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~ 191 (252)
.+..+|+|.|+.. +.++++|+++|++||.|..+.+..++ ..|+|||+|.+.++|.+|+..|||..+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~--- 82 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFG--- 82 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEET---
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEEC---
Confidence 3457999999963 23789999999999999999998864 2479999999999999999999999999
Q ss_pred CCceeEeeecC
Q 025499 192 ARGRITVKRYD 202 (252)
Q Consensus 192 ~g~~i~v~~~~ 202 (252)
|+.|.|..+.
T Consensus 83 -Gr~i~v~~a~ 92 (105)
T 2pe8_A 83 -GRVVKACFYN 92 (105)
T ss_dssp -TEECEEEECC
T ss_pred -CcEEEEEEcC
Confidence 9999999876
No 365
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.52 E-value=2.8e-14 Score=108.84 Aligned_cols=82 Identities=12% Similarity=0.218 Sum_probs=69.9
Q ss_pred CCccEEEEeCCCCCC---------CHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCcccc----
Q 025499 122 HSEYRVIVRGLPSSA---------SWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR---- 188 (252)
Q Consensus 122 ~~~~~l~v~nl~~~~---------t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~---- 188 (252)
....+|||+||+..+ ++++|+++|++||.|+.|.++..+ |||||+|.+.++|+.|++.|+|..|.
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~k--G~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESK--NCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGG--TEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCC--CEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 456899999999998 799999999999999999998754 89999999999999999999999991
Q ss_pred ----CCCCCceeEeeecCCCC
Q 025499 189 ----NPWARGRITVKRYDRSP 205 (252)
Q Consensus 189 ----~~~~g~~i~v~~~~~~~ 205 (252)
+...|+.|.|+.+...+
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TTGGGGGGSCCCEEEECC---
T ss_pred ccccccCCCCEEEEEEccCCC
Confidence 00139999999998543
No 366
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=8.8e-14 Score=94.87 Aligned_cols=64 Identities=17% Similarity=0.358 Sum_probs=55.3
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCC-------CcEEEEEcCChhHHHHHHHHh---cCccc
Q 025499 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-------GTYGVVDYTNPEDMKYAIRKL---DDTEF 187 (252)
Q Consensus 123 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~-------~~~afv~f~~~~~a~~a~~~l---~g~~~ 187 (252)
..++|||+|||..+++++|+++|++||.|. +.++.+.. .|||||+|.+.++|..|++.| +|..+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~ 80 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLY 80 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEE
Confidence 457999999999999999999999999999 77766532 479999999999999999998 55543
No 367
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=5.2e-13 Score=90.43 Aligned_cols=75 Identities=13% Similarity=0.135 Sum_probs=67.4
Q ss_pred CCCcEEEEcCCCCC-CCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECC-HHHHHHHHHhcC--CcccCCeeEEEEe
Q 025499 4 RFSRTIYVGNLPSD-IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFEN-ARDAEDAIRGRD--GYNFDGCRLRVEL 79 (252)
Q Consensus 4 ~~~~~l~v~~lp~~-~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~-~~~a~~a~~~l~--~~~~~g~~i~v~~ 79 (252)
.+++.|||+||+++ ++.++|+++|++||+|..|.+..+. ..|||.|.+ +++|..|+..|+ +..|.|..+.+.+
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~---~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA---KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC---SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC---CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 57899999999999 9999999999999999999997653 369999999 899999999894 6889999999987
Q ss_pred cC
Q 025499 80 AH 81 (252)
Q Consensus 80 ~~ 81 (252)
..
T Consensus 93 L~ 94 (121)
T 1owx_A 93 LE 94 (121)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 368
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.42 E-value=4.9e-13 Score=89.43 Aligned_cols=76 Identities=21% Similarity=0.244 Sum_probs=65.1
Q ss_pred CccEEEEeCC--CCCCC--------HHHHHHHHHHhCCceEEEEeeCCC------CcEEEEEcCChhHHHHHHHHhcCcc
Q 025499 123 SEYRVIVRGL--PSSAS--------WQDLKDHMRKAGDVCFAEVSRDSE------GTYGVVDYTNPEDMKYAIRKLDDTE 186 (252)
Q Consensus 123 ~~~~l~v~nl--~~~~t--------~~~l~~~f~~~g~v~~~~~~~~~~------~~~afv~f~~~~~a~~a~~~l~g~~ 186 (252)
+...|.|.|+ |..+. +++|+++|++||.|..+.++.+.. .|+|||+|.+.++|.+|+..|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4568999998 33332 368999999999999999987753 4799999999999999999999999
Q ss_pred ccCCCCCceeEeeecC
Q 025499 187 FRNPWARGRITVKRYD 202 (252)
Q Consensus 187 ~~~~~~g~~i~v~~~~ 202 (252)
+. |+.|.|.+..
T Consensus 84 f~----GR~i~v~~~~ 95 (105)
T 3v4m_A 84 FA----NRVVVTKYCD 95 (105)
T ss_dssp ET----TEECEEEEEC
T ss_pred eC----CCEEEEEEeC
Confidence 99 9999998765
No 369
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.40 E-value=1.3e-12 Score=88.38 Aligned_cols=77 Identities=16% Similarity=0.086 Sum_probs=66.0
Q ss_pred CCccEEEEeCCCCCCC----------HHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCCC
Q 025499 122 HSEYRVIVRGLPSSAS----------WQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPW 191 (252)
Q Consensus 122 ~~~~~l~v~nl~~~~t----------~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~ 191 (252)
.+...|.|.|+-.... +++|++.|++||.|..+.+..+...|++||+|.+.++|.+|+..|||..+.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~--- 81 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFA--- 81 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEET---
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEEC---
Confidence 3456899999743322 358899999999999999987766799999999999999999999999999
Q ss_pred CCceeEeeecC
Q 025499 192 ARGRITVKRYD 202 (252)
Q Consensus 192 ~g~~i~v~~~~ 202 (252)
|+.|.|.+..
T Consensus 82 -GR~i~v~~~~ 91 (114)
T 3s6e_A 82 -GKMITAAYVP 91 (114)
T ss_dssp -TEECEEEEEC
T ss_pred -CEEEEEEEEc
Confidence 9999998875
No 370
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.39 E-value=8.9e-13 Score=89.85 Aligned_cols=76 Identities=16% Similarity=0.268 Sum_probs=66.0
Q ss_pred CccEEEEeCCCCC-----CCHHHHHHHHHHhCCceEEEEeeCCCC--------cEEEEEcCChhHHHHHHHHhcCccccC
Q 025499 123 SEYRVIVRGLPSS-----ASWQDLKDHMRKAGDVCFAEVSRDSEG--------TYGVVDYTNPEDMKYAIRKLDDTEFRN 189 (252)
Q Consensus 123 ~~~~l~v~nl~~~-----~t~~~l~~~f~~~g~v~~~~~~~~~~~--------~~afv~f~~~~~a~~a~~~l~g~~~~~ 189 (252)
+..+|+|.|+-.. -.+++|++.|++||.|..|.++.+..+ |++||+|.+.++|.+|+..|||..+.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~- 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA- 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC-
Confidence 5679999998432 236899999999999999999887532 79999999999999999999999999
Q ss_pred CCCCceeEeeecC
Q 025499 190 PWARGRITVKRYD 202 (252)
Q Consensus 190 ~~~g~~i~v~~~~ 202 (252)
|+.|.|.+..
T Consensus 98 ---GR~i~v~~~~ 107 (118)
T 3ue2_A 98 ---GRKVVAEVYD 107 (118)
T ss_dssp ---TEECEEEEEC
T ss_pred ---CcEEEEEEcC
Confidence 9999998865
No 371
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=2.8e-12 Score=81.34 Aligned_cols=75 Identities=16% Similarity=0.243 Sum_probs=64.4
Q ss_pred CCCCcEEEEcCCC----CCCCH----HHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCee
Q 025499 3 GRFSRTIYVGNLP----SDIRE----YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR 74 (252)
Q Consensus 3 ~~~~~~l~v~~lp----~~~t~----~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~ 74 (252)
+.|.-||+|.-.| .++-+ .+|.+.|.+||+|..+++..+ .+||+|.+.++|.+|++ |+|..+.|+.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-----~~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-----KMWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-----SEEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-----CEEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 4688899998776 23444 678999999999999999754 38999999999999999 9999999999
Q ss_pred EEEEecCCC
Q 025499 75 LRVELAHGG 83 (252)
Q Consensus 75 i~v~~~~~~ 83 (252)
|+|+++.+.
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999998754
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.35 E-value=1.3e-12 Score=104.89 Aligned_cols=80 Identities=18% Similarity=0.166 Sum_probs=65.0
Q ss_pred CCCCccEEEEeC--CCCCCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCc--e
Q 025499 120 SRHSEYRVIVRG--LPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG--R 195 (252)
Q Consensus 120 ~~~~~~~l~v~n--l~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~--~ 195 (252)
...+..+|||+| |+..+++++|+++|++||.|..|.+.. ..|||||+|.+.++|++|++.|||..+.. ..|+ .
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~-~~g~~~~ 90 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVD-DLGQKIT 90 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEEC-TTSCEEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCcccc-ccCCceE
Confidence 345668999999 578999999999999999999987765 34899999999999999999999999841 1133 4
Q ss_pred eEeeecC
Q 025499 196 ITVKRYD 202 (252)
Q Consensus 196 i~v~~~~ 202 (252)
|.+.+..
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 5555543
No 373
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.34 E-value=5e-13 Score=89.27 Aligned_cols=69 Identities=23% Similarity=0.252 Sum_probs=58.1
Q ss_pred EeCCCCCCCHHHHHHHH------------HHhCCceEEEEeeCCC---CcEEEEEcCChhHHHHHHHHhcCccccCCCCC
Q 025499 129 VRGLPSSASWQDLKDHM------------RKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (252)
Q Consensus 129 v~nl~~~~t~~~l~~~f------------~~~g~v~~~~~~~~~~---~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g 193 (252)
+.+|+..+++++|+++| ++||.|..+.+..+.. .|||||+|.+.++|.+|+..|||..+. |
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~----G 95 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFN----G 95 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEET----T
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEEC----C
Confidence 34566666777666665 9999999999987753 379999999999999999999999999 9
Q ss_pred ceeEeeec
Q 025499 194 GRITVKRY 201 (252)
Q Consensus 194 ~~i~v~~~ 201 (252)
+.|.|..+
T Consensus 96 r~i~v~~s 103 (104)
T 1jmt_A 96 QPIHAELS 103 (104)
T ss_dssp EECCEEEC
T ss_pred EEEEEEEc
Confidence 99998765
No 374
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=4.6e-11 Score=78.79 Aligned_cols=74 Identities=14% Similarity=0.144 Sum_probs=60.4
Q ss_pred cEEEEeCCC-------CCCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeE
Q 025499 125 YRVIVRGLP-------SSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (252)
Q Consensus 125 ~~l~v~nl~-------~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~ 197 (252)
..|.|.... ..+++++|+++|++||.|..|.+.. ...|||||+|++.++|..|+..+++ +. ++.|.
T Consensus 11 ~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-~~rGfaFVeF~~~~~A~~Ai~~~~~--~~----g~~l~ 83 (100)
T 2d9o_A 11 PKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-KKPGTAVVEFATVKAAELAVQNEVG--LV----DNPLK 83 (100)
T ss_dssp CEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-SSSSEEEEEESCHHHHHHHHHTCCB--CS----SSBCE
T ss_pred ceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-CCCCEEEEEECCHHHHHHHHHhcCC--CC----CCeEE
Confidence 456665543 4689999999999999999999883 4558999999999999999998655 44 88999
Q ss_pred eeecCCCC
Q 025499 198 VKRYDRSP 205 (252)
Q Consensus 198 v~~~~~~~ 205 (252)
|..+...+
T Consensus 84 V~~a~~~~ 91 (100)
T 2d9o_A 84 ISWLEGQP 91 (100)
T ss_dssp EECSSCCC
T ss_pred EEEccCCC
Confidence 99887443
No 375
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=1.9e-11 Score=77.86 Aligned_cols=73 Identities=18% Similarity=0.278 Sum_probs=62.5
Q ss_pred CCCCcEEEEcCCCCC-----CCH----HHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCe
Q 025499 3 GRFSRTIYVGNLPSD-----IRE----YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC 73 (252)
Q Consensus 3 ~~~~~~l~v~~lp~~-----~t~----~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~ 73 (252)
+.|.-||+|.-++.. +-+ .+|.+.|.+||+|..+++..+. +||+|.+.++|.+|+. |+|..+.|+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-----~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-----MLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-----EEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-----EEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 378889999888743 333 5689999999999999997652 9999999999999999 999999999
Q ss_pred eEEEEecC
Q 025499 74 RLRVELAH 81 (252)
Q Consensus 74 ~i~v~~~~ 81 (252)
.|+|.+..
T Consensus 86 ~L~V~~k~ 93 (95)
T 1ufw_A 86 AVKISGPS 93 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEeccC
Confidence 99998753
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=4.3e-11 Score=81.00 Aligned_cols=76 Identities=11% Similarity=0.223 Sum_probs=65.5
Q ss_pred CCCCCccEEEEeCCCCC-CCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCC-hhHHHHHHHHhc--CccccCCCCCc
Q 025499 119 ISRHSEYRVIVRGLPSS-ASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTN-PEDMKYAIRKLD--DTEFRNPWARG 194 (252)
Q Consensus 119 ~~~~~~~~l~v~nl~~~-~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~-~~~a~~a~~~l~--g~~~~~~~~g~ 194 (252)
..-++++.|+|+||+.. ++.++|+++|+.||.|.+|.+..+.. .|||.|.+ +++|..|+..|+ +..|. +.
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~----g~ 86 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQLR----NK 86 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBCTT----SS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcEEe----Cc
Confidence 34456799999999999 99999999999999999999988774 79999999 899999999995 66666 66
Q ss_pred eeEeee
Q 025499 195 RITVKR 200 (252)
Q Consensus 195 ~i~v~~ 200 (252)
.+++..
T Consensus 87 ~~~~ev 92 (121)
T 1owx_A 87 EVTWEV 92 (121)
T ss_dssp SEEEEE
T ss_pred EEEEEE
Confidence 666644
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=1.3e-10 Score=73.69 Aligned_cols=73 Identities=19% Similarity=0.150 Sum_probs=62.1
Q ss_pred CccEEEEeCCCC----CCCH----HHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCc
Q 025499 123 SEYRVIVRGLPS----SASW----QDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (252)
Q Consensus 123 ~~~~l~v~nl~~----~~t~----~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~ 194 (252)
+.-||+|..++. ..-+ .+|.+.|..||.|..+++..+. +||+|.+.++|.+|+. |||..+. |+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~----Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELL----NR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEET----TE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeC----Ce
Confidence 445888877662 3333 6789999999999999999975 9999999999999998 9999999 99
Q ss_pred eeEeeecCCC
Q 025499 195 RITVKRYDRS 204 (252)
Q Consensus 195 ~i~v~~~~~~ 204 (252)
.|+|..+...
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999998743
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=6.2e-10 Score=70.91 Aligned_cols=72 Identities=8% Similarity=0.180 Sum_probs=61.2
Q ss_pred CCccEEEEeCCCCC-----CCH----HHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCCCC
Q 025499 122 HSEYRVIVRGLPSS-----ASW----QDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWA 192 (252)
Q Consensus 122 ~~~~~l~v~nl~~~-----~t~----~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~ 192 (252)
++.-||+|..++.. +.+ .+|.+.|..||.|..+++..+. +||+|.+.++|.+||. |+|..+.
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v~---- 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKVK---- 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEET----
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeeeC----
Confidence 34568999888643 222 5689999999999999999985 9999999999999999 9999999
Q ss_pred CceeEeeecC
Q 025499 193 RGRITVKRYD 202 (252)
Q Consensus 193 g~~i~v~~~~ 202 (252)
|+.|+|....
T Consensus 84 Gr~L~V~~k~ 93 (95)
T 1ufw_A 84 GRAVKISGPS 93 (95)
T ss_dssp TEEEEEECCC
T ss_pred CeEEEEeccC
Confidence 9999998643
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.06 E-value=3.9e-10 Score=85.99 Aligned_cols=78 Identities=24% Similarity=0.264 Sum_probs=63.7
Q ss_pred CCcEEEEcCCCC-----CCCHHHHHHHHhhcCceeEEEEec-------CCCCCeEEEEEECCHHHHHHHHHhcCCcccCC
Q 025499 5 FSRTIYVGNLPS-----DIREYEVEDLFYKYGRILDIELKI-------PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (252)
Q Consensus 5 ~~~~l~v~~lp~-----~~t~~~l~~~f~~~G~v~~v~~~~-------~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g 72 (252)
++..+.+.|+-. +-.+++|.+.|++||.|.++.+.. ++.++|++||+|.+.++|.+|+..|+|..++|
T Consensus 123 ~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g 202 (222)
T 3dxb_A 123 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 202 (222)
T ss_dssp BCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred ccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECC
Confidence 344555555432 245789999999999999999942 23678999999999999999999999999999
Q ss_pred eeEEEEecCC
Q 025499 73 CRLRVELAHG 82 (252)
Q Consensus 73 ~~i~v~~~~~ 82 (252)
+.|.+.++..
T Consensus 203 r~i~~~~~~~ 212 (222)
T 3dxb_A 203 RKVVAEVYDQ 212 (222)
T ss_dssp SBCEEEECCH
T ss_pred eEEEEEEcCH
Confidence 9999999753
No 380
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.89 E-value=1.2e-08 Score=66.19 Aligned_cols=73 Identities=15% Similarity=0.124 Sum_probs=66.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhc-----CceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEE
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKY-----GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~-----G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 78 (252)
+..++|-|-|||..+++..|+.+++++ |.|..|.+..+ -+=|+|+|.+...|.+|.-.|+|..|.|++|+|.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD---H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD---FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT---TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC---CCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 347899999999999999999999999 99999999876 4569999999999999997899999999999987
Q ss_pred e
Q 025499 79 L 79 (252)
Q Consensus 79 ~ 79 (252)
-
T Consensus 96 T 96 (117)
T 2l9w_A 96 T 96 (117)
T ss_dssp C
T ss_pred C
Confidence 4
No 381
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=5.8e-08 Score=62.60 Aligned_cols=74 Identities=19% Similarity=0.238 Sum_probs=63.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhh-----cCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEE
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYK-----YGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~-----~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 78 (252)
.-.++|.|.|||+.+.++.|.-+|+. -|+|.+|+... +-|+|+|.+.+.|+..|. -..+.+++.+|.|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-----~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-----CGGVLTFREPADAERVLA-QADHELHGAQLSLR 79 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-----TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-----CcEEEEEcChHHHHHHhc-CCcceecCeEEEEE
Confidence 45789999999999999999999987 25999998863 569999999999999998 45689999999998
Q ss_pred ecCCC
Q 025499 79 LAHGG 83 (252)
Q Consensus 79 ~~~~~ 83 (252)
...+.
T Consensus 80 P~~~~ 84 (104)
T 2dhx_A 80 PAPPR 84 (104)
T ss_dssp ECCCC
T ss_pred cCCCC
Confidence 76544
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.83 E-value=4.2e-08 Score=63.74 Aligned_cols=70 Identities=11% Similarity=0.087 Sum_probs=65.7
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHHh-----CCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEe
Q 025499 124 EYRVIVRGLPSSASWQDLKDHMRKA-----GDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (252)
Q Consensus 124 ~~~l~v~nl~~~~t~~~l~~~f~~~-----g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v 198 (252)
..+|-|-|||..+++..|+.+.+++ |.++.+.+..+. +-|+|+|.+...|.+|..+|+|.+|. |+.|++
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH--~GAivef~d~~~AgKasLaL~G~ef~----gr~Lr~ 94 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF--NGAIIIFRDSKFAAKMLMILNGSQFQ----GKVIRS 94 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT--TEEEEECSCHHHHHHHHHHHSSEEET----TEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC--CceEEEEccchhhHHHHhhcCCeeec----CeEEEe
Confidence 5789999999999999999999999 999999999887 67999999999999999999999999 999987
Q ss_pred e
Q 025499 199 K 199 (252)
Q Consensus 199 ~ 199 (252)
.
T Consensus 95 g 95 (117)
T 2l9w_A 95 G 95 (117)
T ss_dssp E
T ss_pred c
Confidence 4
No 383
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.75 E-value=1.8e-08 Score=76.66 Aligned_cols=63 Identities=17% Similarity=0.270 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHhCCceEEEEeeCCCC--------cEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeeecC
Q 025499 136 ASWQDLKDHMRKAGDVCFAEVSRDSEG--------TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (252)
Q Consensus 136 ~t~~~l~~~f~~~g~v~~~~~~~~~~~--------~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~~~ 202 (252)
-.+++|.+.|++||.|..+.+..+..+ |++||+|.+.++|.+|+..|||+.+. |+.|.+.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~----gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA----GRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS----SSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC----CeEEEEEEcC
Confidence 356889999999999999999855332 69999999999999999999999999 9999998865
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.47 E-value=7e-07 Score=57.87 Aligned_cols=77 Identities=18% Similarity=0.130 Sum_probs=64.5
Q ss_pred CCCcEEEEcCCCCCC-C----HHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEE
Q 025499 4 RFSRTIYVGNLPSDI-R----EYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~-t----~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 78 (252)
.-.++|+|.||+.++ + .+.++++|..|+++........ =.=..|.|.++++|.+|-..|++..++|+.|+|.
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS---FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS---FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT---TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc---ceEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 445789999998864 3 2577999999999988877543 2236999999999999999999999999999999
Q ss_pred ecCCC
Q 025499 79 LAHGG 83 (252)
Q Consensus 79 ~~~~~ 83 (252)
++++.
T Consensus 80 Fgq~~ 84 (104)
T 1wey_A 80 FAQTL 84 (104)
T ss_dssp CCCCS
T ss_pred ecCCC
Confidence 99854
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.14 E-value=1e-05 Score=51.61 Aligned_cols=65 Identities=17% Similarity=0.229 Sum_probs=54.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecC-----CCCCeEEEEEECCHHHHHHHHHhcCCcccC
Q 025499 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-----PRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (252)
Q Consensus 7 ~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~-----~~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 71 (252)
++|.|++||+.+|++++.+.+....++....+... ...-.-|||.|.+.+++....+.++|..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 57999999999999999999999988766665332 123456999999999999999999998874
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.00 E-value=2.3e-05 Score=49.88 Aligned_cols=54 Identities=19% Similarity=0.358 Sum_probs=44.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhc
Q 025499 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (252)
Q Consensus 6 ~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l 65 (252)
.+.++| ++|+.+...||.++|+.||.| .|..+.+ .-|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD----TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD----TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET----TEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC----CeEEEEecCHHHHHHHHHhc
Confidence 467888 999999999999999999955 3444332 46999999999999999865
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.91 E-value=0.0001 Score=49.12 Aligned_cols=71 Identities=18% Similarity=0.264 Sum_probs=59.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCC-eeEEEEecC
Q 025499 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG-CRLRVELAH 81 (252)
Q Consensus 6 ~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g-~~i~v~~~~ 81 (252)
.+-|.|-+.|+.. ...|...|++||+|.+.... ....+..|.|.+..+|++||. .||..|.| .-|=|.+..
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~---~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS---NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC---SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC---CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 5678888999986 57788899999999988762 236799999999999999999 79999975 677777754
No 388
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.85 E-value=6.4e-05 Score=48.71 Aligned_cols=72 Identities=14% Similarity=0.080 Sum_probs=61.1
Q ss_pred cEEEEeCCCCCC-C----HHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEee
Q 025499 125 YRVIVRGLPSSA-S----WQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (252)
Q Consensus 125 ~~l~v~nl~~~~-t----~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~ 199 (252)
++|+|.||+..+ . .+.++++|..|+.+........- .-..|.|.++++|.+|...||+..+. |..+++-
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF--RRirv~F~~~~~A~~AR~~Lh~~~f~----g~~~r~Y 79 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF--KRVRINFSNPLSAADARLRLHKTEFL----GKEMKLY 79 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT--TEEEEECSSTTHHHHHHHTSTTSEET----TEECEEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc--eEEEEEeCChHHHHHHHHHhccceec----CceeEEE
Confidence 689999998755 2 25778999999988887666543 36889999999999999999999999 9999998
Q ss_pred ecC
Q 025499 200 RYD 202 (252)
Q Consensus 200 ~~~ 202 (252)
.+.
T Consensus 80 Fgq 82 (104)
T 1wey_A 80 FAQ 82 (104)
T ss_dssp CCC
T ss_pred ecC
Confidence 877
No 389
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.78 E-value=3e-05 Score=49.54 Aligned_cols=54 Identities=19% Similarity=0.355 Sum_probs=44.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcC
Q 025499 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66 (252)
Q Consensus 7 ~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 66 (252)
+.++| ++|+.+.-.||.++|+.||.| .|..+-+ .-|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD----TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD----TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET----TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC----CeEEEEecCHHHHHHHHHhcc
Confidence 56788 999999999999999999944 3444332 469999999999999998654
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.69 E-value=0.00028 Score=44.93 Aligned_cols=64 Identities=19% Similarity=0.382 Sum_probs=56.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC------cEEEEEcCChhHHHHHHHHhcCcccc
Q 025499 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG------TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (252)
Q Consensus 125 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~------~~afv~f~~~~~a~~a~~~l~g~~~~ 188 (252)
++|.|.+||+.+|++++.+.+.....+....+...+.. .-|+|.|.+.+++..-.+.++|..+-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 47889999999999999999999988888777766533 38999999999999999999999987
No 391
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.57 E-value=0.00014 Score=49.14 Aligned_cols=76 Identities=24% Similarity=0.318 Sum_probs=56.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEE-Ee---------------cCC-CCCeEEEEEECCHHHHHHHHHhcCC
Q 025499 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIE-LK---------------IPP-RPPCYCFVEFENARDAEDAIRGRDG 67 (252)
Q Consensus 5 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~-~~---------------~~~-~~~g~afV~f~~~~~a~~a~~~l~~ 67 (252)
...-|.|-+.|+..+ ..+...|++||.|.+-. +. .+. ....+..|+|.+..+|.+||. .||
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 445677778877665 66778999999887722 11 010 125688999999999999999 899
Q ss_pred cccCCeeEEEEecCC
Q 025499 68 YNFDGCRLRVELAHG 82 (252)
Q Consensus 68 ~~~~g~~i~v~~~~~ 82 (252)
..|+|.-|=|.+...
T Consensus 84 ~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 84 AVFNGVLLGVIPYTK 98 (132)
T ss_dssp CEETTEECEEEECCH
T ss_pred eEeCcEEEEEEECCH
Confidence 999999888888753
No 392
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.56 E-value=0.0012 Score=42.54 Aligned_cols=69 Identities=22% Similarity=0.309 Sum_probs=54.5
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHH---h--CCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEe
Q 025499 124 EYRVIVRGLPSSASWQDLKDHMRK---A--GDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (252)
Q Consensus 124 ~~~l~v~nl~~~~t~~~l~~~f~~---~--g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v 198 (252)
..+|.|.|||..+.++.|.-.|+. - |.|..+.... +-|+|+|.+.+.|++.+.. ....+. +..|.|
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k-~~H~L~----~~~LsV 78 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ-ADHELH----GAQLSL 78 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC-SCCBSS----SSBCEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC-Ccceec----CeEEEE
Confidence 469999999999999999999987 2 4788888766 4799999999999999874 234444 566666
Q ss_pred eec
Q 025499 199 KRY 201 (252)
Q Consensus 199 ~~~ 201 (252)
...
T Consensus 79 ~P~ 81 (104)
T 2dhx_A 79 RPA 81 (104)
T ss_dssp EEC
T ss_pred EcC
Confidence 553
No 393
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.51 E-value=0.00011 Score=47.04 Aligned_cols=75 Identities=21% Similarity=0.247 Sum_probs=54.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecC-----CCCCeEEEEEECCHHHHHHHHHhcCCcccCC-----eeE
Q 025499 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-----PRPPCYCFVEFENARDAEDAIRGRDGYNFDG-----CRL 75 (252)
Q Consensus 6 ~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~-----~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g-----~~i 75 (252)
+-+|.|+.|||.+||+++.+.++..-++....+... ...-.-|||.|.+.+++....+.++|..+.+ .+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 457999999999999999988887666533222211 1122458999999999999999999988743 244
Q ss_pred EEEec
Q 025499 76 RVELA 80 (252)
Q Consensus 76 ~v~~~ 80 (252)
.|++|
T Consensus 89 ~VE~A 93 (97)
T 2l08_A 89 VVEFA 93 (97)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 45554
No 394
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.45 E-value=0.00052 Score=43.74 Aligned_cols=53 Identities=19% Similarity=0.260 Sum_probs=43.9
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhc
Q 025499 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLD 183 (252)
Q Consensus 126 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~ 183 (252)
.++| ++|..+...||.++|+.||.| .|..+.+. .|||.|.+++.|..|+..+.
T Consensus 18 Vf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT---sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 18 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp EEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT---EEEEECSCHHHHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 4555 999999999999999999943 34555553 89999999999999999764
No 395
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.42 E-value=0.0008 Score=44.84 Aligned_cols=72 Identities=18% Similarity=0.220 Sum_probs=56.7
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCccccCCCCCceeEeee
Q 025499 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (252)
Q Consensus 122 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~g~~i~v~~ 200 (252)
....-|.|-+.|... ...|..+|++||.|+.... ....+...|.|.+..+|++||. .||..+.+ +--|-|..
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g---~~mIGV~p 93 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--SNTGNWMHIRYQSKLQARKALS-KDGRIFGE---SIMIGVKP 93 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--CSSSSEEEEEESSHHHHHHHHT-TTTCEETT---TEECEEEE
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--CCCCCeEEEEeCCHHHHHHHHH-hCCeEecC---CEEEEEEE
Confidence 345788899988874 6778899999999998876 3334699999999999999999 69998872 24455554
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.41 E-value=0.0001 Score=61.34 Aligned_cols=56 Identities=20% Similarity=0.231 Sum_probs=43.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHH
Q 025499 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (252)
Q Consensus 5 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (252)
..++|+|. .|..+++.+|.++|++||+|.++.+..+ ...||.|+|.+.+++++++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~--~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES--FGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS--SSEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc--CCeEEEEEeCCHHHHHHHHh
Confidence 45789996 7999999999999999999999988654 24799999999999998876
No 397
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.21 E-value=0.00055 Score=43.76 Aligned_cols=53 Identities=21% Similarity=0.217 Sum_probs=44.3
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhc
Q 025499 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLD 183 (252)
Q Consensus 126 ~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~ 183 (252)
.++| ++|..+...||.++|+.|| -..|..+.+. .|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT---sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT---SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT---EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 4445 9999999999999999999 4445555554 89999999999999999765
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.72 E-value=0.0013 Score=54.76 Aligned_cols=55 Identities=15% Similarity=0.191 Sum_probs=42.3
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHH
Q 025499 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIR 180 (252)
Q Consensus 124 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~ 180 (252)
..+|+|. .|..+++.+|.+.|+.||.|..+.+..+.. .||.|||.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-EEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-eEEEEEeCCHHHHHHHHh
Confidence 3589997 799999999999999999999999887552 499999999999997765
No 399
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.55 E-value=0.002 Score=41.23 Aligned_cols=66 Identities=18% Similarity=0.332 Sum_probs=51.8
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCC------cEEEEEcCChhHHHHHHHHhcCccccC
Q 025499 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG------TYGVVDYTNPEDMKYAIRKLDDTEFRN 189 (252)
Q Consensus 124 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~------~~afv~f~~~~~a~~a~~~l~g~~~~~ 189 (252)
...|.|..||+.+|++++.+.+...-.+.+..+...... .-|+|.|.+.++...-.+.++|..+-+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 358999999999999998888876655444443333222 389999999999999999999999873
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.78 E-value=0.017 Score=39.07 Aligned_cols=72 Identities=21% Similarity=0.313 Sum_probs=51.0
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHHHhCCceE-EEEee--------------CC---CCcEEEEEcCChhHHHHHHHHhcCc
Q 025499 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCF-AEVSR--------------DS---EGTYGVVDYTNPEDMKYAIRKLDDT 185 (252)
Q Consensus 124 ~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~-~~~~~--------------~~---~~~~afv~f~~~~~a~~a~~~l~g~ 185 (252)
..-|.|-+.|...+ ..+-+.|++||.|.. +.... -+ ..+...|+|++..+|.+|+. .||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 35677888876654 456688999998876 21111 01 13588999999999999998 8999
Q ss_pred cccCCCCCceeEeeec
Q 025499 186 EFRNPWARGRITVKRY 201 (252)
Q Consensus 186 ~~~~~~~g~~i~v~~~ 201 (252)
.|. |.-|-|..-
T Consensus 85 ii~----G~mIGV~Py 96 (132)
T 3p3d_A 85 VFN----GVLLGVIPY 96 (132)
T ss_dssp EET----TEECEEEEC
T ss_pred EeC----cEEEEEEEC
Confidence 998 666666543
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.93 E-value=0.14 Score=43.44 Aligned_cols=55 Identities=18% Similarity=0.345 Sum_probs=44.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcC
Q 025499 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66 (252)
Q Consensus 6 ~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 66 (252)
...++|+ +|+.+...+|.++|+.||.| +|.... ...|||.|.+.+.|..++..+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid----dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID----DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS----SSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc----CCeEEEEECCHHHHHHHHHHHH
Confidence 3577776 99999999999999999965 444332 3569999999999999998774
No 402
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=89.50 E-value=2.5 Score=26.16 Aligned_cols=58 Identities=14% Similarity=0.277 Sum_probs=49.0
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcC
Q 025499 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD 184 (252)
Q Consensus 123 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g 184 (252)
..+-+.|-|+|..+-..++.-...-.|---+|.... |.|.|.|.+.++...|+..|-+
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid----gqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID----GQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS----SCEEEEESSHHHHHHHHHHHEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec----CeeEEEecCChHHHHHHHHHHh
Confidence 357889999999999999888888888777777765 5799999999999999987733
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=88.87 E-value=1.7 Score=26.06 Aligned_cols=68 Identities=19% Similarity=0.228 Sum_probs=44.3
Q ss_pred EEEEcCCCC-CCCHHHHHHHHhhcC-----ceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 025499 8 TIYVGNLPS-DIREYEVEDLFYKYG-----RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (252)
Q Consensus 8 ~l~v~~lp~-~~t~~~l~~~f~~~G-----~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 81 (252)
+|||..--. .++..+|..++..-+ .|-.|.+. -.|.||+-... .|..++..|++..+.|+.+.|..+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-----d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM-----DNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC-----SSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe-----CCcEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 566743332 377788888887655 45556664 35789998866 4678888899999999999988753
No 404
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.81 E-value=1.2 Score=37.81 Aligned_cols=55 Identities=20% Similarity=0.232 Sum_probs=44.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcC
Q 025499 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD 184 (252)
Q Consensus 125 ~~l~v~nl~~~~t~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g 184 (252)
..++|+ +|..+...+|.++|+.||.+ .|..+.+ ..|||.|.+.+.|..++..+..
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd---t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD---TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS---SEEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC---CeEEEEECCHHHHHHHHHHHHh
Confidence 455565 89999999999999999954 4555554 3899999999999999998853
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=81.12 E-value=7.6 Score=24.02 Aligned_cols=69 Identities=17% Similarity=0.200 Sum_probs=52.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEEEEe
Q 025499 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (252)
Q Consensus 4 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (252)
..+|-|-|-|+|..+-..++.-.....|---.|... -|.|.|.|.+.++-..|++.|-+ -++.+|.++.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi-----dgqamirfqnsdeqrlaiqklln--hnnnklqiei 78 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-----DGQAMIRFQNSDEQRLAIQKLLN--HNNNKLQIEI 78 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-----SSCEEEEESSHHHHHHHHHHHEE--TTTTEEEEEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-----cCeeEEEecCChHHHHHHHHHHh--cCCCEEEEEE
Confidence 457788899999999999988888888855566554 46799999999999999986622 2344555554
No 406
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=70.18 E-value=17 Score=22.51 Aligned_cols=55 Identities=9% Similarity=0.167 Sum_probs=39.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cC-ceeEEEEecCCCCCeEEEEEECCHHHHHHHHH
Q 025499 9 IYVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (252)
Q Consensus 9 l~v~~lp~~~t~~~l~~~f~~-~G-~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (252)
.|+-.+...++..+|.+.++. || .|..|..........-|||++....+|.....
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 344467889999999999987 56 67777664433334459999998877766544
No 407
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=67.96 E-value=9.6 Score=27.01 Aligned_cols=55 Identities=15% Similarity=0.085 Sum_probs=37.4
Q ss_pred EEEcCCCC-C--------CCHHHHHHHH--hhcCceeEEEEecCCCCCeEEEEEECCHH-HHHHHHH
Q 025499 9 IYVGNLPS-D--------IREYEVEDLF--YKYGRILDIELKIPPRPPCYCFVEFENAR-DAEDAIR 63 (252)
Q Consensus 9 l~v~~lp~-~--------~t~~~l~~~f--~~~G~v~~v~~~~~~~~~g~afV~f~~~~-~a~~a~~ 63 (252)
+.|-|+|. . ....+|.+.| ..|.++.-..+.-.....|+|.|.|...- .-..|+.
T Consensus 15 gIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 15 GIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 45668886 2 3457899977 99998875555544556789999998543 3334554
No 408
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=63.95 E-value=18 Score=22.26 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=38.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cC-ceeEEEEecCCCCCeEEEEEECCHHHHHHHHH
Q 025499 9 IYVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (252)
Q Consensus 9 l~v~~lp~~~t~~~l~~~f~~-~G-~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (252)
-|+-.+.+.+|..+|.+.++. || .|..|..........-|||++...++|.....
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid~~~ 80 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVAS 80 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHHHHH
Confidence 344567889999999999986 66 77777775433334469999987766554433
No 409
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=57.88 E-value=1.4 Score=30.53 Aligned_cols=28 Identities=11% Similarity=0.132 Sum_probs=18.0
Q ss_pred HHHHHHHhhcCceeEEEEecCCCCCeEEEEEEC
Q 025499 21 YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFE 53 (252)
Q Consensus 21 ~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~ 53 (252)
+|+.++|...|.|+-+... +||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~-----kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVR-----MGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEETT-----TTEEEEEEE
T ss_pred CcccccccceeEEEEEECC-----CCeeEEeeC
Confidence 4566777778877665443 899999976
No 410
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=48.42 E-value=69 Score=22.63 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=33.7
Q ss_pred cEEEEeCCCC-C--------CCHHHHHHHH--HHhCCceEEEEeeCC-CCcEEEEEcCChhH
Q 025499 125 YRVIVRGLPS-S--------ASWQDLKDHM--RKAGDVCFAEVSRDS-EGTYGVVDYTNPED 174 (252)
Q Consensus 125 ~~l~v~nl~~-~--------~t~~~l~~~f--~~~g~v~~~~~~~~~-~~~~afv~f~~~~~ 174 (252)
..+.|.|+|. . ....+|.+.| ..|..+.-..+.... ..|+|.|+|..--.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWN 74 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChH
Confidence 4777888886 2 3457899977 888776644444333 22699999996433
No 411
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=46.93 E-value=45 Score=22.73 Aligned_cols=55 Identities=18% Similarity=0.319 Sum_probs=37.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cC-ceeEEEEecCCCCCeEEEEEECCHHHHHHHHH
Q 025499 9 IYVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (252)
Q Consensus 9 l~v~~lp~~~t~~~l~~~f~~-~G-~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (252)
-|+-.+...++..+|.+.++. || .|..|..........-|||.+....+|.....
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAn 137 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIAN 137 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHH
Confidence 344467889999999988876 56 67777664432224459999987766665443
No 412
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=46.58 E-value=47 Score=22.87 Aligned_cols=54 Identities=9% Similarity=0.116 Sum_probs=37.2
Q ss_pred EEcCCCCCCCHHHHHHHHhh-cC-ceeEEEEecCCCCCeEEEEEECCHHHHHHHHH
Q 025499 10 YVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (252)
Q Consensus 10 ~v~~lp~~~t~~~l~~~f~~-~G-~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (252)
|+--+...++..+|.+.++. || .|..|..........-|||.+....+|.....
T Consensus 90 ~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAn 145 (150)
T 4a17_R 90 MVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLAN 145 (150)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHH
Confidence 44457888999999988876 56 67777664432224459999987766665443
No 413
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=46.50 E-value=51 Score=22.89 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=38.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cC-ceeEEEEecCCCCCeEEEEEECCHHHHHHHHH
Q 025499 9 IYVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (252)
Q Consensus 9 l~v~~lp~~~t~~~l~~~f~~-~G-~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (252)
.|+-.+...++..+|.+.++. || .|..|..........-|||++....+|.....
T Consensus 95 ~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~KKAiVtL~~g~~aid~~~ 151 (156)
T 2zkr_s 95 TLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVAN 151 (156)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSCEEEEEEECTTSCHHHHHH
T ss_pred cEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEECCCCcHHHHHH
Confidence 344467889999999999886 56 77777764432224459999987766555444
No 414
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=43.78 E-value=40 Score=23.25 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=37.3
Q ss_pred EEcCCCCCCCHHHHHHHHhh-cC-ceeEEEEecCCCCCeEEEEEECCHHHHHHHHH
Q 025499 10 YVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (252)
Q Consensus 10 ~v~~lp~~~t~~~l~~~f~~-~G-~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (252)
|+-.+...++..+|.+.++. || .|..|..........-|||++....+|.....
T Consensus 92 ~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAn 147 (152)
T 3iz5_X 92 LVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVAN 147 (152)
T ss_dssp EEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHG
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 44457788898999888876 56 67777764433334459999998777666544
No 415
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.66 E-value=13 Score=21.53 Aligned_cols=11 Identities=36% Similarity=0.791 Sum_probs=8.9
Q ss_pred CeEEEEEECCH
Q 025499 45 PCYCFVEFENA 55 (252)
Q Consensus 45 ~g~afV~f~~~ 55 (252)
+..|||.|.+.
T Consensus 37 ~~~ClV~FeD~ 47 (68)
T 2e5p_A 37 REVCLVQFEDD 47 (68)
T ss_dssp TTEEEEEETTT
T ss_pred CcEEEEEEccC
Confidence 67899999853
No 416
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=40.16 E-value=64 Score=19.84 Aligned_cols=54 Identities=13% Similarity=0.047 Sum_probs=40.1
Q ss_pred EEeCCCCCCCHHHHHHHHHH-hC-CceEEEEeeCCCC-cEEEEEcCChhHHHHHHHH
Q 025499 128 IVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRK 181 (252)
Q Consensus 128 ~v~nl~~~~t~~~l~~~f~~-~g-~v~~~~~~~~~~~-~~afv~f~~~~~a~~a~~~ 181 (252)
++-......+..+|++.+++ |+ .|..+.....+.+ .-|+|.+..-.+|......
T Consensus 26 ~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 26 LTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHHh
Confidence 34446678899999999988 56 6777777665543 4899999988888776554
No 417
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=38.96 E-value=29 Score=26.59 Aligned_cols=30 Identities=30% Similarity=0.438 Sum_probs=24.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCceeEE
Q 025499 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDI 36 (252)
Q Consensus 6 ~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v 36 (252)
..-+.|+|||+.++..-|..++.. +.+..+
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~ 139 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARL 139 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEE
Confidence 346789999999999999999987 555443
No 418
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=38.77 E-value=59 Score=26.77 Aligned_cols=59 Identities=24% Similarity=0.292 Sum_probs=40.9
Q ss_pred EEEcCCCCCC----CHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCee
Q 025499 9 IYVGNLPSDI----REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR 74 (252)
Q Consensus 9 l~v~~lp~~~----t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~ 74 (252)
-+||||..-. ....+.++..+||+|..+++- +.-+|...+++.++.++. -++..+.+++
T Consensus 17 PliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g------~~~~vvv~~p~~~k~il~-~~~~~f~~rp 79 (494)
T 3swz_A 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG------TKTTVIVGHHQLAKEVLI-KKGKDFSGRP 79 (494)
T ss_dssp CEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET------TEEEEEECSHHHHHHHHT-TTTTTTBBCC
T ss_pred CeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC------CCCEEEECCHHHHHHHHH-hCcHhhCCCC
Confidence 4788876432 135678888999999888772 345788889999999886 3444454443
No 419
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=38.51 E-value=55 Score=18.59 Aligned_cols=56 Identities=7% Similarity=-0.019 Sum_probs=42.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhc
Q 025499 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (252)
Q Consensus 6 ~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l 65 (252)
..++.|.++....=...|.+.+.. ..|..+.+... .+-+.|+|.+.++...++..+
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~---~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN---EAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS---EEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc---CCEEEEEECCHHHHHHHHHHc
Confidence 356889899888778899999999 88988888432 456788888666777777743
No 420
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=37.16 E-value=29 Score=30.42 Aligned_cols=54 Identities=20% Similarity=0.262 Sum_probs=40.6
Q ss_pred cCCCCCCCHHHHHHHHh----hcCceeEEEEec--CCCCCeEEEEEECCHHHHHHHHHhc
Q 025499 12 GNLPSDIREYEVEDLFY----KYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGR 65 (252)
Q Consensus 12 ~~lp~~~t~~~l~~~f~----~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l 65 (252)
+..+.+.+--||..+|- .+|.|..+.++. -.....++++.|.+.++|..++..+
T Consensus 349 ~~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 349 CQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHH
Confidence 34566666668888883 789999988843 2344567899999999999988755
No 421
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=36.92 E-value=17 Score=21.10 Aligned_cols=12 Identities=33% Similarity=0.711 Sum_probs=9.4
Q ss_pred CCeEEEEEECCH
Q 025499 44 PPCYCFVEFENA 55 (252)
Q Consensus 44 ~~g~afV~f~~~ 55 (252)
..+.|+|.|.+-
T Consensus 40 ~~gtC~V~F~D~ 51 (66)
T 2eqj_A 40 LKQSCFIIFEDS 51 (66)
T ss_dssp TTTEEEEEETTT
T ss_pred CCcEEEEEEccC
Confidence 368899999863
No 422
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=35.50 E-value=77 Score=20.10 Aligned_cols=53 Identities=19% Similarity=0.303 Sum_probs=41.3
Q ss_pred EeCCCCCCCHHHHHHHHH-HhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcCc
Q 025499 129 VRGLPSSASWQDLKDHMR-KAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDT 185 (252)
Q Consensus 129 v~nl~~~~t~~~l~~~f~-~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~ 185 (252)
|-.++..+.-+||..... .||.-..+.... ....|-..+.+|..+||+.|+-.
T Consensus 21 Ii~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n----~EllIpl~sQeDLDkaIellDrs 74 (103)
T 2cu1_A 21 ILQFPRPVKLEDLRSKAKIAFGQSMDLHYTN----NELVIPLTTQDDLDKAVELLDRS 74 (103)
T ss_dssp EEEEESSCCHHHHHHHHHHHHSSCEEEEECS----SSSCEECCSHHHHHHHHHHHHHC
T ss_pred EEeccCCccHHHHHHHHHHHhCCeeeEEEec----ceEEEeccCHHHHHHHHHHHccC
Confidence 445788999898887665 589877776663 25789999999999999987655
No 423
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=34.02 E-value=18 Score=27.92 Aligned_cols=32 Identities=22% Similarity=0.240 Sum_probs=25.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCceeEEEE
Q 025499 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIEL 38 (252)
Q Consensus 7 ~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~ 38 (252)
..+.|+|||+.++..-|..++.....+..+.+
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~ 146 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHF 146 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEE
Confidence 46789999999999999999986555555433
No 424
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=33.53 E-value=62 Score=20.76 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=26.5
Q ss_pred ceeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCc
Q 025499 32 RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68 (252)
Q Consensus 32 ~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~ 68 (252)
.|.++.. .+..+||.|||=.+..++..|++.+.+.
T Consensus 40 ~I~Si~~--~~~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVA--PEHVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEE--CTTCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEe--cCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 3555544 3456999999999999999999866543
No 425
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=32.32 E-value=1.2e+02 Score=20.66 Aligned_cols=55 Identities=16% Similarity=0.128 Sum_probs=40.2
Q ss_pred EEEeCCCCCCCHHHHHHHHHH-hC-CceEEEEeeCCCC-cEEEEEcCChhHHHHHHHH
Q 025499 127 VIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRK 181 (252)
Q Consensus 127 l~v~nl~~~~t~~~l~~~f~~-~g-~v~~~~~~~~~~~-~~afv~f~~~~~a~~a~~~ 181 (252)
.++-......+..+|++.++. |+ .|..|..+..+++ .-|+|.+....+|......
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnk 138 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIANR 138 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHHh
Confidence 444446678899999999987 56 7777877765544 4799999887777765543
No 426
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=31.76 E-value=23 Score=21.15 Aligned_cols=11 Identities=36% Similarity=0.791 Sum_probs=8.8
Q ss_pred CeEEEEEECCH
Q 025499 45 PCYCFVEFENA 55 (252)
Q Consensus 45 ~g~afV~f~~~ 55 (252)
+..|+|.|.+.
T Consensus 54 ~e~ClV~F~D~ 64 (79)
T 2m0o_A 54 REVCLVQFEDD 64 (79)
T ss_dssp TTEEEEEETTS
T ss_pred CCEEEEEEcCC
Confidence 67899999864
No 427
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=31.63 E-value=51 Score=20.90 Aligned_cols=22 Identities=18% Similarity=0.067 Sum_probs=17.9
Q ss_pred CCHHHHHHHHhhcCceeEEEEe
Q 025499 18 IREYEVEDLFYKYGRILDIELK 39 (252)
Q Consensus 18 ~t~~~l~~~f~~~G~v~~v~~~ 39 (252)
.+++.|.++|+..|.|..-.+.
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~MF 25 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSMF 25 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEET
T ss_pred hHHHHHHHHHhccCCceEeecc
Confidence 4678899999999999876664
No 428
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=31.27 E-value=1.3e+02 Score=20.71 Aligned_cols=55 Identities=13% Similarity=0.079 Sum_probs=39.7
Q ss_pred EEEeCCCCCCCHHHHHHHHHH-hC-CceEEEEeeCCCC-cEEEEEcCChhHHHHHHHH
Q 025499 127 VIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRK 181 (252)
Q Consensus 127 l~v~nl~~~~t~~~l~~~f~~-~g-~v~~~~~~~~~~~-~~afv~f~~~~~a~~a~~~ 181 (252)
.++-......+..+|++.++. |+ .|..|..+..+++ .-|||.+....+|......
T Consensus 89 ~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAnk 146 (150)
T 4a17_R 89 TMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLANK 146 (150)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHHh
Confidence 334445678899999999987 56 6777777766544 4899999887777765543
No 429
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=31.20 E-value=95 Score=19.15 Aligned_cols=34 Identities=24% Similarity=0.211 Sum_probs=24.0
Q ss_pred CceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcC
Q 025499 150 DVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD 184 (252)
Q Consensus 150 ~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g 184 (252)
.|..+.+.. .-.||.||+++..++...++....|
T Consensus 39 ~i~~v~vP~-~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 39 DVYSILASE-SLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp CEEEEEECT-TSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred cEEEEEEec-ccCCEEEEEEecchhHHHHHHCCCC
Confidence 344444432 3568999999999988888876554
No 430
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=30.76 E-value=1.3e+02 Score=20.70 Aligned_cols=54 Identities=15% Similarity=0.054 Sum_probs=39.1
Q ss_pred EEEeCCCCCCCHHHHHHHHHH-hC-CceEEEEeeCCCC-cEEEEEcCChhHHHHHHH
Q 025499 127 VIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIR 180 (252)
Q Consensus 127 l~v~nl~~~~t~~~l~~~f~~-~g-~v~~~~~~~~~~~-~~afv~f~~~~~a~~a~~ 180 (252)
.++-......+..+|++.++. |+ .|..|..+..+++ .-|+|.+....+|.....
T Consensus 91 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAn 147 (152)
T 3iz5_X 91 TLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVAN 147 (152)
T ss_dssp EEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHG
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 344445678889999999987 56 6777777665544 489999998877776544
No 431
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=30.17 E-value=41 Score=27.53 Aligned_cols=48 Identities=19% Similarity=0.292 Sum_probs=32.0
Q ss_pred EEcCCCCC---CCHHHHHHHHhhcCceeEEEEecCCCCCeEEEEEECCHHHHHHHHH
Q 025499 10 YVGNLPSD---IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (252)
Q Consensus 10 ~v~~lp~~---~t~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (252)
+|||+..- -....+.++..+||+|..+.+- +.-+|...+++.++.++.
T Consensus 20 ~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g------~~~~vvv~~p~~i~~vl~ 70 (479)
T 3tbg_A 20 GLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLA------WTPVVVLNGLAAVREALV 70 (479)
T ss_dssp TTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEET------TEEEEEEEHHHHHHHHHT
T ss_pred cccchHhhcCCCHHHHHHHHHHHhCCEEEEEEC------CeeEEEECCHHHHHHHHH
Confidence 45665432 2345578888999999887762 223566678888888775
No 432
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=28.51 E-value=43 Score=25.20 Aligned_cols=29 Identities=31% Similarity=0.285 Sum_probs=22.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCceeE
Q 025499 7 RTIYVGNLPSDIREYEVEDLFYKYGRILD 35 (252)
Q Consensus 7 ~~l~v~~lp~~~t~~~l~~~f~~~G~v~~ 35 (252)
..+.|+|||+.++...|..++.....+..
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~ 119 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIAD 119 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcce
Confidence 35889999999999999888875433433
No 433
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=28.41 E-value=72 Score=19.08 Aligned_cols=49 Identities=12% Similarity=0.171 Sum_probs=31.6
Q ss_pred CCHHHHHHHHhhcCc-eeEEEEecCCCCCeEEEEEECCHHHHHHHHHhcCCcccCCeeEE
Q 025499 18 IREYEVEDLFYKYGR-ILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (252)
Q Consensus 18 ~t~~~l~~~f~~~G~-v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~ 76 (252)
-|+++|..+++.|-. -.+|+ .+|...+.++..+|.+..+.+.|+-+.-.
T Consensus 33 ktedelkkyleefrkesqnik----------vlilvsndeeldkakelaqkmeidvrtrk 82 (110)
T 2kpo_A 33 KTEDELKKYLEEFRKESQNIK----------VLILVSNDEELDKAKELAQKMEIDVRTRK 82 (110)
T ss_dssp CSHHHHHHHHHHHTSSTTSEE----------EEEEESSHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccHHHHHHHHHHHHhhccCeE----------EEEEEcChHHHHHHHHHHHhhceeeeeee
Confidence 478899988888752 22222 35666777888888776565666544433
No 434
>2lsl_A Telomerase associated protein P65; LA protein, LARP7, RRM, RNA BI protein; NMR {Tetrahymena thermophila}
Probab=34.29 E-value=12 Score=23.32 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=18.4
Q ss_pred cEEEEEcCChhHHHHHHHHhcC
Q 025499 163 TYGVVDYTNPEDMKYAIRKLDD 184 (252)
Q Consensus 163 ~~afv~f~~~~~a~~a~~~l~g 184 (252)
|.|.|.|.+.++...|+..|-+
T Consensus 78 gqamirfqnsdeqrlaiqklln 99 (137)
T 2lsl_A 78 GQAMIRFQNSDEQRLAIQKLLN 99 (137)
Confidence 6899999999999988887633
No 435
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=28.10 E-value=19 Score=27.33 Aligned_cols=31 Identities=32% Similarity=0.368 Sum_probs=24.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCceeEEEE
Q 025499 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIEL 38 (252)
Q Consensus 8 ~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~ 38 (252)
-..|+|||+.++..-|..++...+.+..+.+
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~l 128 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHF 128 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEE
Confidence 3489999999999999999987665554433
No 436
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=27.39 E-value=41 Score=25.25 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=23.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCceeEE
Q 025499 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDI 36 (252)
Q Consensus 7 ~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v 36 (252)
..+.|+|||+.++..-|..++.....+..+
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~ 125 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLA 125 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceE
Confidence 347899999999999999999875444443
No 437
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=25.58 E-value=26 Score=20.84 Aligned_cols=11 Identities=27% Similarity=0.425 Sum_probs=8.6
Q ss_pred CCeEEEEEECC
Q 025499 44 PPCYCFVEFEN 54 (252)
Q Consensus 44 ~~g~afV~f~~ 54 (252)
.+||+||+=.+
T Consensus 13 ~KGfGFI~~~d 23 (74)
T 2k5n_A 13 DKGFGFIKDEN 23 (74)
T ss_dssp TTTEEEEEESS
T ss_pred CCCeEEEecCC
Confidence 38999998764
No 438
>1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21
Probab=25.48 E-value=1.3e+02 Score=19.05 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=23.3
Q ss_pred HHHHHHhhcCceeEEEEecCCC-CCeEEEEEECC
Q 025499 22 EVEDLFYKYGRILDIELKIPPR-PPCYCFVEFEN 54 (252)
Q Consensus 22 ~l~~~f~~~G~v~~v~~~~~~~-~~g~afV~f~~ 54 (252)
+|.+.+...| |.+..|...+. ..-|++++..+
T Consensus 28 Ev~~~L~~aG-i~~ysIfl~~~~~~LF~~~E~~d 60 (104)
T 1x8d_A 28 ELEAVLKSHG-AHNYAIYLDKARNLLFAMVEIES 60 (104)
T ss_dssp HHHHHHHHTT-EEEEEEEEETTTTEEEEEEEESC
T ss_pred HHHHHHHHcC-CeEEEEEEECCCCeEEEEEEEcC
Confidence 4677888888 77777755443 34699999988
No 439
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=24.64 E-value=58 Score=19.75 Aligned_cols=20 Identities=20% Similarity=0.463 Sum_probs=17.8
Q ss_pred cCCCCCCCHHHHHHHHhhcC
Q 025499 12 GNLPSDIREYEVEDLFYKYG 31 (252)
Q Consensus 12 ~~lp~~~t~~~l~~~f~~~G 31 (252)
|.|+..+||++|.++++...
T Consensus 50 Gqi~~ki~e~~L~~lL~~i~ 69 (80)
T 1eij_A 50 GRVRSKITDEQLKELLKRVA 69 (80)
T ss_dssp CSSCCCCCHHHHHHHHHHHS
T ss_pred CCCCCCcCHHHHHHHHHHHc
Confidence 67899999999999999864
No 440
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=24.50 E-value=1.6e+02 Score=19.54 Aligned_cols=47 Identities=11% Similarity=0.092 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhCCceEEEEeeCCCCcEEEEEcCChhHHHHHHHHhcC
Q 025499 138 WQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD 184 (252)
Q Consensus 138 ~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g 184 (252)
.+++.+.+..+..|..|........-++.|...+.++....+..+.+
T Consensus 78 ~~~~~~~l~~~p~V~~~~~~tG~~d~~~~v~~~~~~~l~~~~~~l~~ 124 (144)
T 2cfx_A 78 YERFKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSP 124 (144)
T ss_dssp HHHHHHHHHTCTTEEEEEEEESSSSEEEEEEESSHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcChhhheeeeeeCCCCEEEEEEECCHHHHHHHHHHhcC
Confidence 57788888889999999988877667899999999999999887764
No 441
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=24.22 E-value=61 Score=25.93 Aligned_cols=22 Identities=14% Similarity=0.034 Sum_probs=19.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHhh
Q 025499 8 TIYVGNLPSDIREYEVEDLFYK 29 (252)
Q Consensus 8 ~l~v~~lp~~~t~~~l~~~f~~ 29 (252)
...|+|||++++..-|..++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4799999999999999998875
No 442
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=23.81 E-value=41 Score=18.92 Aligned_cols=11 Identities=36% Similarity=0.791 Sum_probs=8.5
Q ss_pred CeEEEEEECCH
Q 025499 45 PCYCFVEFENA 55 (252)
Q Consensus 45 ~g~afV~f~~~ 55 (252)
+..|+|.|.+.
T Consensus 31 ~~~clV~F~D~ 41 (58)
T 4hcz_A 31 REVCLVQFEDD 41 (58)
T ss_dssp TTEEEEEETTS
T ss_pred CCEEEEEEcCC
Confidence 56799999864
No 443
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=23.60 E-value=30 Score=20.58 Aligned_cols=11 Identities=18% Similarity=0.431 Sum_probs=8.8
Q ss_pred CCeEEEEEECC
Q 025499 44 PPCYCFVEFEN 54 (252)
Q Consensus 44 ~~g~afV~f~~ 54 (252)
.+||+||+-.+
T Consensus 11 ~KGfGFI~~~d 21 (74)
T 2kcm_A 11 AKKYGFIQGDD 21 (74)
T ss_dssp TTTEEEEEETT
T ss_pred CCCEEEEecCC
Confidence 38999998764
No 444
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=23.60 E-value=1.6e+02 Score=20.92 Aligned_cols=46 Identities=9% Similarity=0.083 Sum_probs=28.9
Q ss_pred cEEEEcCCCCCCCHHHH--------HHHHhhcCceeEEEEecCCCCCeEEEEEEC
Q 025499 7 RTIYVGNLPSDIREYEV--------EDLFYKYGRILDIELKIPPRPPCYCFVEFE 53 (252)
Q Consensus 7 ~~l~v~~lp~~~t~~~l--------~~~f~~~G~v~~v~~~~~~~~~g~afV~f~ 53 (252)
+.+-| -||..++.++- .++|..+|-|.++-|..++.....|-|-|.
T Consensus 72 re~~i-ALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~~~~~NpHaHim~t 125 (185)
T 2ns6_A 72 KEVEF-ALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHAGGGENPHCHLMIS 125 (185)
T ss_dssp EEEEE-ECCTTSCHHHHHHHHHHHHHHHHTTTTCCEEEEEEEETTTEEEEEEEEC
T ss_pred EEEEE-ECCccCCHHHHHHHHHHHHHHHHHhcCCEEEEEEEcCCCCCceEEEEEe
Confidence 34444 79999887763 445566787788877654333345566554
No 445
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=23.26 E-value=61 Score=27.96 Aligned_cols=52 Identities=15% Similarity=0.147 Sum_probs=33.4
Q ss_pred CCCCCCHHHHHHHHh----hcCceeEEEEecC--CCCCeEEEEEECCHHHHHHHHHhc
Q 025499 14 LPSDIREYEVEDLFY----KYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGR 65 (252)
Q Consensus 14 lp~~~t~~~l~~~f~----~~G~v~~v~~~~~--~~~~g~afV~f~~~~~a~~a~~~l 65 (252)
++.+.+.-+|+.+|- .+|.|..+.++.. ......+++.|.+.++|.+|+..+
T Consensus 281 ~~~~~~g~dl~~~~~GseGtlGIIT~~tlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~ 338 (584)
T 2uuu_A 281 GARSGAGINYKHIILGSEGTLGIITEAVMKVHAVPQAVEYYGFLFPTFAHAVSALQQI 338 (584)
T ss_dssp ------CCCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccCCCcchhhhhccCCCCcEEEEEEEEEEEecccceEEEEEEcCCHHHHHHHHHHH
Confidence 444445556777664 5678999888442 233467899999999999988755
No 446
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=22.97 E-value=81 Score=26.35 Aligned_cols=52 Identities=31% Similarity=0.438 Sum_probs=36.3
Q ss_pred CCCCCCHHHHHHHHh----hcCceeEEEEec--CCCCCeEEEEEECCHHHHHHHHHhc
Q 025499 14 LPSDIREYEVEDLFY----KYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGR 65 (252)
Q Consensus 14 lp~~~t~~~l~~~f~----~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l 65 (252)
++++.+.-+|+.+|- .+|.|..+.++. .......+++.|.+.++|..++..+
T Consensus 194 ~~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~ 251 (476)
T 3pm9_A 194 LKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIA 251 (476)
T ss_dssp CSCCCSSCCCHHHHTTSTTSSCEEEEEEEECEECCSEEEEEEEEESCHHHHHHHHHHH
T ss_pred ccCCCCCcCHHHHhccCCCCcEEEEEEEEEEeecCceeEEEEEEcCCHHHHHHHHHHH
Confidence 445555556777764 567898988843 2333467899999999999988655
No 447
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=22.88 E-value=59 Score=18.51 Aligned_cols=19 Identities=32% Similarity=0.230 Sum_probs=15.5
Q ss_pred CeEEEEEECCHHHHHHHHH
Q 025499 45 PCYCFVEFENARDAEDAIR 63 (252)
Q Consensus 45 ~g~afV~f~~~~~a~~a~~ 63 (252)
+..-+=+|.++|+|..|..
T Consensus 26 ~r~~LGtf~T~eeAA~AyD 44 (63)
T 1gcc_A 26 ARVWLGTFETAEDAALAYD 44 (63)
T ss_dssp EEEEEEEESSHHHHHHHHH
T ss_pred eEEEeeeCCCHHHHHHHHH
Confidence 4556778999999999875
No 448
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=22.72 E-value=32 Score=19.78 Aligned_cols=10 Identities=40% Similarity=0.670 Sum_probs=8.1
Q ss_pred CCeEEEEEEC
Q 025499 44 PPCYCFVEFE 53 (252)
Q Consensus 44 ~~g~afV~f~ 53 (252)
.+||+||+=.
T Consensus 12 ~kGfGFI~~~ 21 (66)
T 1c9o_A 12 EKGYGFIEVE 21 (66)
T ss_dssp TTTEEEEEET
T ss_pred CCCeEEEecC
Confidence 3899999865
No 449
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=22.15 E-value=34 Score=19.82 Aligned_cols=10 Identities=10% Similarity=0.325 Sum_probs=8.0
Q ss_pred CCeEEEEEEC
Q 025499 44 PPCYCFVEFE 53 (252)
Q Consensus 44 ~~g~afV~f~ 53 (252)
.+||+||+=.
T Consensus 12 ~kGfGFI~~~ 21 (67)
T 3cam_A 12 AKGFGFITPD 21 (67)
T ss_dssp TTTEEEEEET
T ss_pred CCCeEEEecC
Confidence 3899999865
No 450
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=22.05 E-value=48 Score=28.02 Aligned_cols=41 Identities=20% Similarity=0.278 Sum_probs=28.0
Q ss_pred HHHHHH--hhcCceeEEEEecCC--CCCeEEEEEECCHHHHHHHH
Q 025499 22 EVEDLF--YKYGRILDIELKIPP--RPPCYCFVEFENARDAEDAI 62 (252)
Q Consensus 22 ~l~~~f--~~~G~v~~v~~~~~~--~~~g~afV~f~~~~~a~~a~ 62 (252)
+|..+| +.+|.|..+.++... .....+++.|.+.++|..|+
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHH
Confidence 456667 368999999884432 22356789999877766644
No 451
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=21.36 E-value=2.1e+02 Score=19.80 Aligned_cols=54 Identities=17% Similarity=0.118 Sum_probs=38.9
Q ss_pred EEEeCCCCCCCHHHHHHHHHH-hC-CceEEEEeeCCCC-cEEEEEcCChhHHHHHHH
Q 025499 127 VIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIR 180 (252)
Q Consensus 127 l~v~nl~~~~t~~~l~~~f~~-~g-~v~~~~~~~~~~~-~~afv~f~~~~~a~~a~~ 180 (252)
.++-......+..+|++.++. |+ .|..|..+.-+.+ .-|+|.+....+|.....
T Consensus 95 ~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~KKAiVtL~~g~~aid~~~ 151 (156)
T 2zkr_s 95 TLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVAN 151 (156)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSCEEEEEEECTTSCHHHHHH
T ss_pred cEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEECCCCcHHHHHH
Confidence 344446778899999999987 56 7777877665543 479999988777655444
No 452
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=21.25 E-value=36 Score=20.10 Aligned_cols=10 Identities=40% Similarity=0.561 Sum_probs=7.9
Q ss_pred CCeEEEEEEC
Q 025499 44 PPCYCFVEFE 53 (252)
Q Consensus 44 ~~g~afV~f~ 53 (252)
.+||+||+-.
T Consensus 12 ~kGfGFI~~~ 21 (73)
T 3a0j_A 12 EKGYGFIERE 21 (73)
T ss_dssp TTTEEEEECT
T ss_pred CCCEEEEecC
Confidence 3899999865
No 453
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=21.23 E-value=73 Score=19.35 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=16.9
Q ss_pred cCCCCCCCHHHHHHHHhhc
Q 025499 12 GNLPSDIREYEVEDLFYKY 30 (252)
Q Consensus 12 ~~lp~~~t~~~l~~~f~~~ 30 (252)
|.|+..+||++|.+++...
T Consensus 48 Gqi~~ki~e~~L~~lL~~i 66 (81)
T 2fh0_A 48 NNVTHKITEAEIVSILNGI 66 (81)
T ss_dssp TCCSCCBCHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHH
Confidence 6788999999999999875
No 454
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=20.63 E-value=70 Score=14.24 Aligned_cols=13 Identities=31% Similarity=0.508 Sum_probs=10.3
Q ss_pred CHHHHHHHHhhcC
Q 025499 19 REYEVEDLFYKYG 31 (252)
Q Consensus 19 t~~~l~~~f~~~G 31 (252)
++.+|+.+.++|-
T Consensus 14 nekelrdfiekfk 26 (28)
T 1fme_A 14 NEKELRDFIEKFK 26 (28)
T ss_dssp CHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHhc
Confidence 5788999888773
No 455
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=20.62 E-value=38 Score=19.49 Aligned_cols=11 Identities=18% Similarity=0.392 Sum_probs=8.6
Q ss_pred CCeEEEEEECC
Q 025499 44 PPCYCFVEFEN 54 (252)
Q Consensus 44 ~~g~afV~f~~ 54 (252)
.+||+||+-.+
T Consensus 11 ~kGfGFI~~~~ 21 (66)
T 1g6p_A 11 KKGYGFITKDE 21 (66)
T ss_dssp TTTEEEEEETT
T ss_pred CCCEEEEecCC
Confidence 38999998663
No 456
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=25.81 E-value=21 Score=22.97 Aligned_cols=51 Identities=18% Similarity=0.181 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHHhCCceEEEEeeCCCCc-----EEEEEcCChhHHHHHHHHhcCcc
Q 025499 135 SASWQDLKDHMRKAGDVCFAEVSRDSEGT-----YGVVDYTNPEDMKYAIRKLDDTE 186 (252)
Q Consensus 135 ~~t~~~l~~~f~~~g~v~~~~~~~~~~~~-----~afv~f~~~~~a~~a~~~l~g~~ 186 (252)
..+++++..+..+.+ +..+.+......| .-+=.|.+.++|..|+..|-...
T Consensus 33 ~~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 33 SSNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 345566666666665 2334444322111 23337999999999999886544
Done!