Query 025500
Match_columns 252
No_of_seqs 125 out of 1229
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 06:29:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025500.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025500hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 1E-53 2.2E-58 373.7 24.1 216 8-224 1-219 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 2.7E-51 5.9E-56 353.3 22.4 225 6-233 10-240 (336)
3 COG0656 ARA1 Aldo/keto reducta 100.0 4.7E-50 1E-54 339.5 15.6 220 8-250 3-238 (280)
4 PRK09912 L-glyceraldehyde 3-ph 100.0 3.4E-48 7.3E-53 344.0 23.0 214 6-223 11-235 (346)
5 TIGR01293 Kv_beta voltage-depe 100.0 4.9E-48 1.1E-52 339.4 23.4 210 10-224 1-219 (317)
6 cd06660 Aldo_ket_red Aldo-keto 100.0 1.3E-47 2.9E-52 331.6 22.5 207 10-223 1-211 (285)
7 PRK10625 tas putative aldo-ket 100.0 2.2E-47 4.9E-52 339.0 24.2 213 8-224 1-247 (346)
8 PLN02587 L-galactose dehydroge 100.0 1.3E-47 2.9E-52 336.3 21.6 206 10-222 1-216 (314)
9 KOG1577 Aldo/keto reductase fa 100.0 3.3E-46 7.1E-51 316.4 17.4 186 10-218 6-215 (300)
10 PRK10376 putative oxidoreducta 100.0 3.8E-44 8.2E-49 311.0 23.4 207 6-216 5-218 (290)
11 PF00248 Aldo_ket_red: Aldo/ke 100.0 2.2E-44 4.7E-49 311.2 20.3 196 22-224 1-201 (283)
12 PRK14863 bifunctional regulato 100.0 1.3E-44 2.9E-49 313.8 15.9 191 17-221 2-202 (292)
13 PRK11172 dkgB 2,5-diketo-D-glu 100.0 4.4E-43 9.6E-48 301.0 20.6 181 18-220 1-188 (267)
14 COG4989 Predicted oxidoreducta 100.0 1E-43 2.3E-48 290.0 13.8 239 8-249 1-266 (298)
15 PRK11565 dkgA 2,5-diketo-D-glu 100.0 2.5E-41 5.4E-46 291.2 19.8 182 11-217 7-193 (275)
16 KOG1576 Predicted oxidoreducta 100.0 7.5E-42 1.6E-46 281.2 15.6 226 8-236 22-255 (342)
17 COG1453 Predicted oxidoreducta 100.0 1.8E-41 3.9E-46 290.8 16.8 231 8-250 1-249 (391)
18 KOG3023 Glutamate-cysteine lig 98.1 7E-06 1.5E-10 67.8 6.7 78 140-219 155-234 (285)
19 cd03319 L-Ala-DL-Glu_epimerase 96.1 0.27 5.8E-06 43.2 14.5 156 39-217 134-292 (316)
20 cd03316 MR_like Mandelate race 93.9 2.8 6.1E-05 37.3 14.5 154 39-212 139-299 (357)
21 cd03315 MLE_like Muconate lact 93.6 4 8.8E-05 34.7 15.7 158 39-217 85-244 (265)
22 PRK08392 hypothetical protein; 92.4 4.2 9.1E-05 33.6 12.3 149 41-208 14-178 (215)
23 PRK10550 tRNA-dihydrouridine s 91.8 7.4 0.00016 34.2 13.7 132 39-183 73-223 (312)
24 TIGR02370 pyl_corrinoid methyl 91.8 2.5 5.3E-05 34.6 10.1 145 39-205 10-164 (197)
25 cd03174 DRE_TIM_metallolyase D 91.5 1.9 4.1E-05 36.5 9.5 105 105-211 16-135 (265)
26 cd06543 GH18_PF-ChiA-like PF-C 91.4 7.4 0.00016 33.9 13.1 182 22-217 71-266 (294)
27 PF07021 MetW: Methionine bios 90.9 1.2 2.7E-05 36.2 7.2 102 114-217 64-172 (193)
28 cd02070 corrinoid_protein_B12- 90.4 6.9 0.00015 31.9 11.5 145 39-205 9-162 (201)
29 TIGR01928 menC_lowGC/arch o-su 90.1 13 0.00027 32.8 14.6 153 39-217 132-287 (324)
30 cd00308 enolase_like Enolase-s 89.5 3.4 7.3E-05 34.4 9.2 88 126-217 120-209 (229)
31 cd03318 MLE Muconate Lactonizi 89.4 14 0.00031 32.9 13.7 156 40-216 143-302 (365)
32 cd03323 D-glucarate_dehydratas 88.5 19 0.00041 32.7 15.3 151 39-214 168-322 (395)
33 cd03322 rpsA The starvation se 88.5 18 0.00039 32.4 15.0 147 39-213 126-274 (361)
34 TIGR01502 B_methylAsp_ase meth 87.9 9.4 0.0002 35.0 11.5 106 105-213 245-357 (408)
35 TIGR02534 mucon_cyclo muconate 87.0 22 0.00048 31.8 14.4 156 41-216 143-301 (368)
36 PF04476 DUF556: Protein of un 86.5 13 0.00028 31.2 10.5 153 39-207 9-183 (235)
37 PRK07945 hypothetical protein; 86.2 24 0.00051 31.4 13.3 108 40-161 110-227 (335)
38 PRK13958 N-(5'-phosphoribosyl) 85.0 4 8.6E-05 33.6 6.9 67 117-185 16-83 (207)
39 PRK08609 hypothetical protein; 84.8 9.9 0.00021 36.4 10.3 148 43-208 351-522 (570)
40 PRK13796 GTPase YqeH; Provisio 83.8 31 0.00067 31.0 12.6 138 22-172 35-179 (365)
41 PRK05692 hydroxymethylglutaryl 83.2 8.7 0.00019 33.4 8.5 102 105-209 23-138 (287)
42 PRK00164 moaA molybdenum cofac 83.2 31 0.00068 30.3 13.5 150 38-208 49-227 (331)
43 PLN02428 lipoic acid synthase 82.4 25 0.00054 31.5 11.2 158 38-215 130-325 (349)
44 cd03325 D-galactonate_dehydrat 82.2 36 0.00078 30.3 15.6 153 39-211 123-285 (352)
45 cd03321 mandelate_racemase Man 82.0 37 0.0008 30.2 13.8 153 39-211 141-295 (355)
46 cd03327 MR_like_2 Mandelate ra 81.8 37 0.0008 30.1 15.0 152 39-211 120-280 (341)
47 cd03314 MAL Methylaspartate am 81.7 17 0.00037 32.8 10.0 85 128-212 229-320 (369)
48 PRK01222 N-(5'-phosphoribosyl) 81.4 5.9 0.00013 32.7 6.6 67 117-185 18-85 (210)
49 COG0135 TrpF Phosphoribosylant 81.3 14 0.0003 30.6 8.6 83 117-208 17-102 (208)
50 cd00739 DHPS DHPS subgroup of 81.3 17 0.00037 31.0 9.5 102 105-212 21-128 (257)
51 cd02069 methionine_synthase_B1 81.2 28 0.00061 28.8 10.5 145 39-205 13-168 (213)
52 cd07943 DRE_TIM_HOA 4-hydroxy- 80.3 22 0.00048 30.2 10.0 104 105-210 19-131 (263)
53 COG0635 HemN Coproporphyrinoge 80.1 17 0.00036 33.4 9.6 109 20-166 148-276 (416)
54 PRK15072 bifunctional D-altron 78.6 21 0.00045 32.6 9.8 84 126-213 232-317 (404)
55 PF13378 MR_MLE_C: Enolase C-t 77.8 3.9 8.5E-05 29.7 4.0 54 162-216 3-57 (111)
56 PLN00191 enolase 77.5 27 0.00058 32.5 10.2 103 105-216 295-401 (457)
57 COG1140 NarY Nitrate reductase 77.4 1 2.3E-05 40.2 0.9 54 153-206 263-317 (513)
58 PF00682 HMGL-like: HMGL-like 77.3 33 0.00072 28.4 10.0 119 38-172 11-142 (237)
59 TIGR02026 BchE magnesium-proto 77.3 36 0.00077 32.0 11.2 67 137-205 319-392 (497)
60 cd04740 DHOD_1B_like Dihydroor 77.2 47 0.001 28.6 12.7 153 39-205 100-286 (296)
61 cd03317 NAAAR N-acylamino acid 77.1 53 0.0011 29.1 15.1 150 41-216 139-291 (354)
62 cd07944 DRE_TIM_HOA_like 4-hyd 76.9 40 0.00086 28.9 10.5 105 104-211 16-129 (266)
63 PRK00077 eno enolase; Provisio 76.7 38 0.00082 31.2 10.9 99 105-212 261-365 (425)
64 PF05690 ThiG: Thiazole biosyn 75.6 24 0.00053 29.7 8.4 168 21-211 9-182 (247)
65 cd00423 Pterin_binding Pterin 75.6 33 0.00071 29.1 9.6 104 105-214 21-130 (258)
66 PRK14017 galactonate dehydrata 75.3 63 0.0014 29.1 15.6 155 39-213 124-288 (382)
67 COG2089 SpsE Sialic acid synth 75.1 59 0.0013 28.8 10.9 118 38-174 87-224 (347)
68 TIGR00735 hisF imidazoleglycer 74.0 33 0.00071 29.0 9.2 91 114-207 160-253 (254)
69 PLN02363 phosphoribosylanthran 73.8 15 0.00033 31.3 7.0 66 118-184 63-129 (256)
70 cd03324 rTSbeta_L-fuconate_deh 73.5 74 0.0016 29.2 14.5 152 39-211 196-352 (415)
71 TIGR01060 eno phosphopyruvate 73.4 47 0.001 30.6 10.6 98 105-211 262-365 (425)
72 PLN02746 hydroxymethylglutaryl 72.8 10 0.00022 33.9 6.0 100 105-210 65-181 (347)
73 COG1748 LYS9 Saccharopine dehy 72.8 17 0.00037 33.0 7.4 82 39-137 77-159 (389)
74 cd00740 MeTr MeTr subgroup of 72.6 59 0.0013 27.6 11.3 104 104-213 22-128 (252)
75 PRK05588 histidinol-phosphatas 72.1 55 0.0012 27.6 10.2 105 40-160 15-143 (255)
76 cd07939 DRE_TIM_NifV Streptomy 72.1 59 0.0013 27.5 10.4 98 104-209 16-128 (259)
77 smart00642 Aamy Alpha-amylase 71.9 6.9 0.00015 31.0 4.3 21 194-214 73-93 (166)
78 PF00682 HMGL-like: HMGL-like 71.8 26 0.00057 29.0 8.1 97 105-207 11-124 (237)
79 TIGR00676 fadh2 5,10-methylene 71.3 66 0.0014 27.6 12.0 150 41-207 15-186 (272)
80 COG1801 Uncharacterized conser 71.1 62 0.0013 27.7 10.2 110 22-138 4-116 (263)
81 PRK06740 histidinol-phosphatas 71.1 75 0.0016 28.2 12.0 25 40-64 60-84 (331)
82 PRK08195 4-hyroxy-2-oxovalerat 70.9 63 0.0014 28.7 10.6 102 104-211 21-135 (337)
83 PLN02681 proline dehydrogenase 70.5 93 0.002 29.0 12.0 162 42-215 221-413 (455)
84 PRK13361 molybdenum cofactor b 70.1 77 0.0017 27.9 11.4 115 38-173 45-176 (329)
85 cd02810 DHOD_DHPD_FMN Dihydroo 69.9 70 0.0015 27.4 11.6 130 39-183 109-271 (289)
86 PRK13803 bifunctional phosphor 69.9 38 0.00082 32.8 9.5 68 118-185 19-87 (610)
87 PRK02227 hypothetical protein; 69.7 66 0.0014 27.2 9.7 152 39-206 9-182 (238)
88 PRK04452 acetyl-CoA decarbonyl 69.2 70 0.0015 28.3 10.3 94 116-214 83-185 (319)
89 PTZ00081 enolase; Provisional 69.2 57 0.0012 30.2 10.2 97 105-210 281-382 (439)
90 cd07948 DRE_TIM_HCS Saccharomy 69.2 72 0.0016 27.2 11.2 23 39-61 20-42 (262)
91 PRK07328 histidinol-phosphatas 69.1 72 0.0016 27.2 13.5 108 42-163 19-162 (269)
92 PRK06294 coproporphyrinogen II 69.1 39 0.00084 30.4 9.0 60 105-166 167-243 (370)
93 TIGR02666 moaA molybdenum cofa 69.1 80 0.0017 27.7 13.8 115 38-173 43-175 (334)
94 PRK07379 coproporphyrinogen II 68.4 40 0.00087 30.7 9.0 19 146-165 236-254 (400)
95 COG3172 NadR Predicted ATPase/ 68.2 30 0.00064 27.6 6.9 96 54-154 80-185 (187)
96 PRK10415 tRNA-dihydrouridine s 67.7 87 0.0019 27.6 11.7 133 39-183 75-223 (321)
97 cd03313 enolase Enolase: Enola 67.5 78 0.0017 28.9 10.7 96 105-209 261-361 (408)
98 cd03320 OSBS o-Succinylbenzoat 67.4 77 0.0017 26.8 12.6 87 126-217 153-240 (263)
99 PRK12928 lipoyl synthase; Prov 67.2 40 0.00087 29.3 8.4 77 138-215 185-282 (290)
100 TIGR01182 eda Entner-Doudoroff 66.7 39 0.00085 27.8 7.8 87 106-209 18-106 (204)
101 cd02930 DCR_FMN 2,4-dienoyl-Co 66.7 95 0.0021 27.7 12.9 97 82-183 202-305 (353)
102 PF03102 NeuB: NeuB family; I 66.6 43 0.00092 28.3 8.2 112 38-168 53-184 (241)
103 PF14871 GHL6: Hypothetical gl 65.9 16 0.00034 27.9 4.9 24 191-214 44-67 (132)
104 cd07943 DRE_TIM_HOA 4-hydroxy- 65.7 84 0.0018 26.7 16.8 24 38-61 19-42 (263)
105 cd03328 MR_like_3 Mandelate ra 65.0 1E+02 0.0022 27.4 13.9 151 39-211 138-293 (352)
106 TIGR03217 4OH_2_O_val_ald 4-hy 65.0 83 0.0018 27.9 10.1 102 104-211 20-134 (333)
107 cd07939 DRE_TIM_NifV Streptomy 64.9 86 0.0019 26.5 15.3 176 39-221 18-224 (259)
108 PRK05660 HemN family oxidoredu 64.3 74 0.0016 28.7 9.9 25 106-131 172-196 (378)
109 PRK09058 coproporphyrinogen II 64.0 44 0.00094 31.0 8.5 28 105-133 227-254 (449)
110 TIGR01496 DHPS dihydropteroate 63.7 92 0.002 26.5 11.1 100 105-211 20-125 (257)
111 PRK08446 coproporphyrinogen II 63.5 1.1E+02 0.0024 27.2 11.2 59 106-166 163-231 (350)
112 COG2185 Sbm Methylmalonyl-CoA 63.3 40 0.00088 26.1 6.7 96 112-247 30-125 (143)
113 PRK09427 bifunctional indole-3 63.2 27 0.00058 32.5 6.8 65 117-185 272-337 (454)
114 PRK08195 4-hyroxy-2-oxovalerat 63.2 1.1E+02 0.0024 27.2 17.5 178 38-221 22-231 (337)
115 PRK00208 thiG thiazole synthas 63.2 95 0.0021 26.4 15.7 105 104-210 72-181 (250)
116 TIGR00126 deoC deoxyribose-pho 62.5 54 0.0012 27.1 7.9 72 39-125 130-205 (211)
117 TIGR01927 menC_gamma/gm+ o-suc 62.4 1.1E+02 0.0023 26.8 14.1 97 115-217 171-270 (307)
118 PLN02540 methylenetetrahydrofo 62.1 1.5E+02 0.0033 28.4 14.3 150 40-205 14-196 (565)
119 PRK02714 O-succinylbenzoate sy 62.1 1.1E+02 0.0024 26.8 13.8 86 126-217 192-278 (320)
120 PRK05414 urocanate hydratase; 61.8 25 0.00053 33.0 6.2 117 45-175 116-254 (556)
121 PRK13347 coproporphyrinogen II 61.7 52 0.0011 30.5 8.5 60 105-166 216-291 (453)
122 PRK02901 O-succinylbenzoate sy 61.6 84 0.0018 27.8 9.5 71 144-216 173-244 (327)
123 TIGR03822 AblA_like_2 lysine-2 61.5 1.1E+02 0.0025 26.8 12.6 120 39-174 120-252 (321)
124 PF01487 DHquinase_I: Type I 3 61.5 91 0.002 25.6 10.1 120 39-173 73-192 (224)
125 PRK08776 cystathionine gamma-s 61.1 1.3E+02 0.0028 27.4 10.9 88 126-217 99-188 (405)
126 PRK07259 dihydroorotate dehydr 60.4 1.1E+02 0.0024 26.4 11.4 153 39-205 102-289 (301)
127 COG0042 tRNA-dihydrouridine sy 60.4 1.2E+02 0.0026 26.8 10.6 132 39-183 77-227 (323)
128 TIGR01228 hutU urocanate hydra 60.0 26 0.00057 32.7 6.0 117 45-175 107-245 (545)
129 PRK06015 keto-hydroxyglutarate 60.0 30 0.00065 28.4 5.9 85 107-208 15-101 (201)
130 COG1168 MalY Bifunctional PLP- 59.8 1.4E+02 0.003 27.1 13.5 150 39-220 39-207 (388)
131 cd03329 MR_like_4 Mandelate ra 59.6 1.3E+02 0.0028 26.9 15.2 151 39-211 143-299 (368)
132 COG0076 GadB Glutamate decarbo 59.6 29 0.00063 32.3 6.4 154 39-218 74-251 (460)
133 COG2355 Zn-dependent dipeptida 59.2 86 0.0019 27.7 8.9 107 41-163 149-260 (313)
134 TIGR00742 yjbN tRNA dihydrouri 59.2 1.3E+02 0.0028 26.6 10.5 126 39-174 65-215 (318)
135 PF13407 Peripla_BP_4: Peripla 59.0 38 0.00083 27.9 6.7 53 107-165 13-65 (257)
136 COG2069 CdhD CO dehydrogenase/ 58.6 1.3E+02 0.0028 26.5 10.7 95 115-214 157-261 (403)
137 cd00405 PRAI Phosphoribosylant 58.1 53 0.0011 26.6 7.2 47 116-169 67-113 (203)
138 TIGR00737 nifR3_yhdG putative 57.9 1.3E+02 0.0028 26.3 12.3 133 39-183 73-221 (319)
139 PRK08645 bifunctional homocyst 57.6 1.9E+02 0.0041 28.0 14.5 110 39-153 41-163 (612)
140 TIGR03247 glucar-dehydr glucar 56.2 1.7E+02 0.0037 27.1 14.7 157 39-213 180-338 (441)
141 COG4464 CapC Capsular polysacc 55.4 49 0.0011 27.6 6.3 42 38-79 17-61 (254)
142 PRK15440 L-rhamnonate dehydrat 55.2 58 0.0013 29.6 7.5 68 143-210 247-318 (394)
143 PRK05283 deoxyribose-phosphate 55.1 87 0.0019 26.8 8.1 77 40-127 146-227 (257)
144 PRK00730 rnpA ribonuclease P; 54.9 74 0.0016 24.5 6.9 63 81-153 46-110 (138)
145 cd04742 NPD_FabD 2-Nitropropan 53.9 60 0.0013 29.9 7.3 89 117-212 6-103 (418)
146 COG3623 SgaU Putative L-xylulo 53.9 38 0.00083 28.6 5.5 76 15-92 65-156 (287)
147 cd03326 MR_like_1 Mandelate ra 53.7 1.7E+02 0.0038 26.4 14.0 145 39-206 160-313 (385)
148 PF01081 Aldolase: KDPG and KH 53.3 30 0.00064 28.3 4.8 81 113-209 24-106 (196)
149 COG2896 MoaA Molybdenum cofact 52.4 37 0.0008 30.0 5.6 94 38-155 43-151 (322)
150 cd07940 DRE_TIM_IPMS 2-isoprop 52.3 1.5E+02 0.0032 25.2 15.7 178 38-221 17-231 (268)
151 cd02801 DUS_like_FMN Dihydrour 52.2 1.3E+02 0.0028 24.6 9.4 133 39-184 65-213 (231)
152 PF03851 UvdE: UV-endonuclease 51.9 1.6E+02 0.0034 25.5 11.6 103 39-146 43-165 (275)
153 TIGR00677 fadh2_euk methylenet 51.8 1.6E+02 0.0034 25.5 12.8 152 40-207 15-190 (281)
154 PRK09061 D-glutamate deacylase 51.7 1.4E+02 0.003 28.2 9.7 113 41-164 169-285 (509)
155 TIGR02660 nifV_homocitr homoci 51.7 1.8E+02 0.0039 26.1 10.6 97 104-208 19-130 (365)
156 PRK00912 ribonuclease P protei 51.5 1.4E+02 0.0031 24.8 11.7 141 40-209 15-172 (237)
157 PRK08208 coproporphyrinogen II 51.3 1.4E+02 0.0031 27.3 9.6 60 105-166 205-275 (430)
158 TIGR03822 AblA_like_2 lysine-2 51.3 1.7E+02 0.0037 25.7 12.1 77 141-217 153-240 (321)
159 COG1751 Uncharacterized conser 51.1 79 0.0017 24.9 6.5 75 35-123 8-84 (186)
160 cd02932 OYE_YqiM_FMN Old yello 50.8 1.8E+02 0.0038 25.7 13.2 94 82-183 219-319 (336)
161 PF01175 Urocanase: Urocanase; 50.6 41 0.00089 31.6 5.7 128 44-185 105-257 (546)
162 cd07938 DRE_TIM_HMGL 3-hydroxy 50.4 84 0.0018 27.0 7.5 99 105-209 17-132 (274)
163 PRK06582 coproporphyrinogen II 50.2 1.2E+02 0.0026 27.5 8.7 60 105-166 174-250 (390)
164 cd07948 DRE_TIM_HCS Saccharomy 49.9 1.2E+02 0.0026 25.8 8.3 100 104-211 18-132 (262)
165 cd07940 DRE_TIM_IPMS 2-isoprop 49.6 1.6E+02 0.0035 25.0 9.1 96 105-208 17-131 (268)
166 smart00052 EAL Putative diguan 49.4 1.1E+02 0.0025 24.7 8.0 100 108-211 99-210 (241)
167 PF01207 Dus: Dihydrouridine s 49.3 57 0.0012 28.6 6.3 133 39-183 64-212 (309)
168 cd07944 DRE_TIM_HOA_like 4-hyd 49.3 1.7E+02 0.0036 25.0 16.4 178 39-221 18-225 (266)
169 PRK06552 keto-hydroxyglutarate 49.1 57 0.0012 27.0 5.9 81 113-209 29-114 (213)
170 PRK12331 oxaloacetate decarbox 49.0 1.5E+02 0.0032 27.6 9.2 104 105-210 23-142 (448)
171 TIGR02080 O_succ_thio_ly O-suc 49.0 2E+02 0.0044 25.9 10.8 88 127-218 91-180 (382)
172 TIGR03471 HpnJ hopanoid biosyn 48.9 1.5E+02 0.0032 27.5 9.4 92 113-207 288-394 (472)
173 PF09989 DUF2229: CoA enzyme a 48.6 62 0.0014 26.9 6.2 28 184-211 192-219 (221)
174 TIGR03217 4OH_2_O_val_ald 4-hy 48.1 2E+02 0.0043 25.5 17.5 178 38-221 21-230 (333)
175 cd02803 OYE_like_FMN_family Ol 47.6 1.9E+02 0.0041 25.2 13.2 94 82-183 206-310 (327)
176 PRK15108 biotin synthase; Prov 47.5 2.1E+02 0.0045 25.5 11.6 105 38-158 76-188 (345)
177 TIGR00538 hemN oxygen-independ 47.2 1.5E+02 0.0032 27.4 9.1 60 105-166 215-290 (455)
178 COG0646 MetH Methionine syntha 47.1 2E+02 0.0043 25.3 11.3 115 38-152 50-183 (311)
179 TIGR00048 radical SAM enzyme, 46.9 68 0.0015 28.8 6.5 88 128-215 218-333 (355)
180 PRK15408 autoinducer 2-binding 46.7 2E+02 0.0044 25.3 12.3 80 80-175 21-104 (336)
181 COG4943 Predicted signal trans 46.3 2.6E+02 0.0056 26.4 11.1 140 70-224 341-506 (524)
182 KOG1549 Cysteine desulfurase N 46.2 1.6E+02 0.0035 27.2 8.7 72 143-216 144-223 (428)
183 cd07945 DRE_TIM_CMS Leptospira 46.1 1.9E+02 0.0042 24.9 15.9 114 106-221 109-233 (280)
184 PLN02389 biotin synthase 46.1 2.3E+02 0.005 25.7 13.3 101 38-155 116-227 (379)
185 COG0502 BioB Biotin synthase a 46.0 2.2E+02 0.0047 25.5 9.3 133 38-190 84-233 (335)
186 PF07476 MAAL_C: Methylasparta 45.7 49 0.0011 27.7 4.9 101 103-208 84-193 (248)
187 PRK09389 (R)-citramalate synth 45.7 2.2E+02 0.0047 26.8 9.9 25 38-62 21-45 (488)
188 PRK14461 ribosomal RNA large s 45.5 2.4E+02 0.0051 25.6 10.2 89 128-216 231-353 (371)
189 PRK00507 deoxyribose-phosphate 45.4 85 0.0018 26.1 6.5 74 39-125 134-209 (221)
190 TIGR02814 pfaD_fam PfaD family 45.4 91 0.002 29.0 7.2 89 117-212 11-108 (444)
191 PF00809 Pterin_bind: Pterin b 45.3 63 0.0014 26.5 5.7 93 117-213 27-125 (210)
192 PRK05628 coproporphyrinogen II 45.3 2.2E+02 0.0047 25.5 9.7 27 105-132 172-198 (375)
193 TIGR01430 aden_deam adenosine 45.1 2.1E+02 0.0045 24.9 13.2 105 106-215 138-243 (324)
194 PF05368 NmrA: NmrA-like famil 44.8 99 0.0021 25.2 6.9 85 125-217 22-107 (233)
195 PRK07114 keto-hydroxyglutarate 44.7 1.9E+02 0.004 24.2 9.0 88 107-208 26-116 (222)
196 PRK11858 aksA trans-homoaconit 44.6 2.4E+02 0.0052 25.4 9.8 99 104-210 22-135 (378)
197 cd03174 DRE_TIM_metallolyase D 44.4 1.9E+02 0.004 24.1 14.5 179 39-221 17-232 (265)
198 COG1625 Fe-S oxidoreductase, r 44.3 68 0.0015 29.3 6.0 118 42-166 95-223 (414)
199 TIGR00035 asp_race aspartate r 44.1 1.2E+02 0.0026 25.1 7.3 68 105-173 14-94 (229)
200 PRK08599 coproporphyrinogen II 44.1 1.8E+02 0.0039 26.1 8.9 59 105-165 164-239 (377)
201 TIGR02090 LEU1_arch isopropylm 43.7 1.9E+02 0.0041 25.9 8.9 97 104-208 18-129 (363)
202 PRK13753 dihydropteroate synth 43.6 2.2E+02 0.0047 24.7 10.6 102 105-214 22-129 (279)
203 cd01974 Nitrogenase_MoFe_beta 43.3 2.5E+02 0.0054 25.8 9.9 104 61-181 64-191 (435)
204 PRK07094 biotin synthase; Prov 43.3 2.2E+02 0.0048 24.7 14.1 115 38-173 70-201 (323)
205 TIGR03597 GTPase_YqeH ribosome 43.1 2.4E+02 0.0053 25.2 11.5 138 21-171 28-172 (360)
206 cd07937 DRE_TIM_PC_TC_5S Pyruv 42.8 2.2E+02 0.0047 24.4 16.9 26 37-62 17-42 (275)
207 TIGR01278 DPOR_BchB light-inde 42.5 3E+02 0.0065 26.0 11.9 133 69-214 69-243 (511)
208 PRK14459 ribosomal RNA large s 42.3 2.2E+02 0.0048 25.8 9.0 90 127-216 240-360 (373)
209 COG4992 ArgD Ornithine/acetylo 42.2 1.4E+02 0.0031 27.3 7.7 56 166-221 174-235 (404)
210 COG4948 L-alanine-DL-glutamate 42.0 2.5E+02 0.0055 25.0 14.6 154 39-212 143-298 (372)
211 cd02067 B12-binding B12 bindin 42.0 1.3E+02 0.0029 21.7 7.8 56 148-204 21-78 (119)
212 PRK06256 biotin synthase; Vali 42.0 2.4E+02 0.0052 24.7 11.6 118 38-173 91-222 (336)
213 TIGR03699 mena_SCO4550 menaqui 41.8 2.4E+02 0.0052 24.8 9.2 120 38-171 72-214 (340)
214 PRK07535 methyltetrahydrofolat 41.7 2.2E+02 0.0048 24.3 11.0 101 105-212 22-124 (261)
215 COG1121 ZnuC ABC-type Mn/Zn tr 41.0 1.9E+02 0.0042 24.7 8.0 66 106-174 113-207 (254)
216 PRK12581 oxaloacetate decarbox 40.8 3.1E+02 0.0068 25.7 15.1 151 39-206 103-264 (468)
217 PF01053 Cys_Met_Meta_PP: Cys/ 40.6 1.1E+02 0.0023 27.9 6.9 81 140-220 104-187 (386)
218 TIGR01290 nifB nitrogenase cof 40.4 3E+02 0.0066 25.5 10.7 111 104-217 59-200 (442)
219 TIGR00381 cdhD CO dehydrogenas 40.2 2.9E+02 0.0063 25.2 11.2 106 108-218 128-254 (389)
220 PF01118 Semialdhyde_dh: Semia 40.2 43 0.00094 24.6 3.6 27 39-65 75-101 (121)
221 PF02679 ComA: (2R)-phospho-3- 40.1 71 0.0015 27.1 5.2 85 42-134 85-169 (244)
222 PRK08247 cystathionine gamma-s 39.5 1.8E+02 0.0039 25.9 8.1 64 156-219 116-181 (366)
223 PRK11815 tRNA-dihydrouridine s 39.3 2.7E+02 0.0059 24.6 9.1 133 39-183 75-232 (333)
224 COG0626 MetC Cystathionine bet 38.9 1.9E+02 0.004 26.5 8.0 80 142-221 114-196 (396)
225 TIGR00973 leuA_bact 2-isopropy 38.8 3.4E+02 0.0074 25.6 17.0 180 39-221 21-235 (494)
226 PRK14041 oxaloacetate decarbox 38.7 2E+02 0.0043 27.0 8.4 100 105-210 22-141 (467)
227 PRK13352 thiamine biosynthesis 38.7 3.2E+02 0.0069 25.2 9.8 104 39-159 75-183 (431)
228 PRK05799 coproporphyrinogen II 38.5 2.9E+02 0.0063 24.6 9.9 25 106-131 164-188 (374)
229 COG2159 Predicted metal-depend 38.4 2.7E+02 0.0057 24.2 8.8 97 118-216 55-169 (293)
230 cd04731 HisF The cyclase subun 38.3 2.3E+02 0.005 23.5 13.3 85 116-203 156-243 (243)
231 cd08583 PI-PLCc_GDPD_SF_unchar 37.9 2.3E+02 0.005 23.4 9.5 22 39-60 13-34 (237)
232 PRK05458 guanosine 5'-monophos 37.9 2.3E+02 0.0049 25.2 8.3 125 75-209 15-145 (326)
233 PRK05968 hypothetical protein; 37.8 2E+02 0.0043 25.9 8.2 54 164-217 136-190 (389)
234 PRK09454 ugpQ cytoplasmic glyc 37.5 2.4E+02 0.0053 23.5 14.4 59 154-212 140-217 (249)
235 PF00072 Response_reg: Respons 37.1 92 0.002 21.6 4.9 59 124-185 42-102 (112)
236 cd00739 DHPS DHPS subgroup of 36.4 2.7E+02 0.0058 23.7 10.1 49 116-165 157-209 (257)
237 PRK09249 coproporphyrinogen II 36.3 2.5E+02 0.0055 25.9 8.8 25 106-131 216-240 (453)
238 COG2987 HutU Urocanate hydrata 36.3 94 0.002 28.9 5.6 101 67-181 148-261 (561)
239 PRK14041 oxaloacetate decarbox 36.2 3.7E+02 0.008 25.2 17.8 24 37-60 21-44 (467)
240 PRK07811 cystathionine gamma-s 36.1 3.2E+02 0.007 24.5 9.8 101 113-218 88-190 (388)
241 cd00502 DHQase_I Type I 3-dehy 36.1 2.4E+02 0.0053 23.1 12.6 107 39-163 74-182 (225)
242 PF01904 DUF72: Protein of unk 36.0 2.5E+02 0.0055 23.3 11.1 140 47-214 12-152 (230)
243 COG1797 CobB Cobyrinic acid a, 35.7 1.5E+02 0.0032 27.5 6.8 77 139-228 199-299 (451)
244 COG0820 Predicted Fe-S-cluster 35.6 3.3E+02 0.0072 24.5 9.1 93 82-174 100-207 (349)
245 TIGR01428 HAD_type_II 2-haloal 35.6 1E+02 0.0023 24.3 5.5 64 110-175 61-128 (198)
246 COG0001 HemL Glutamate-1-semia 35.5 3.7E+02 0.0079 25.0 12.3 145 39-214 70-244 (432)
247 KOG0369 Pyruvate carboxylase [ 35.4 3.8E+02 0.0082 26.7 9.6 147 40-217 42-197 (1176)
248 COG1540 Uncharacterized protei 35.3 51 0.0011 27.8 3.5 32 24-56 13-59 (252)
249 cd04734 OYE_like_3_FMN Old yel 35.2 3.2E+02 0.007 24.2 14.7 94 82-183 206-314 (343)
250 COG2873 MET17 O-acetylhomoseri 35.0 3.6E+02 0.0077 24.7 11.9 138 30-220 52-193 (426)
251 TIGR00221 nagA N-acetylglucosa 35.0 2.1E+02 0.0046 25.9 7.8 123 39-175 75-211 (380)
252 PTZ00413 lipoate synthase; Pro 34.9 3.6E+02 0.0078 24.7 12.9 161 37-215 176-373 (398)
253 TIGR01329 cysta_beta_ly_E cyst 34.8 2.3E+02 0.005 25.4 8.1 88 127-218 86-175 (378)
254 cd00248 Mth938-like Mth938-lik 34.7 1.4E+02 0.003 21.7 5.5 51 162-212 37-87 (109)
255 PF01619 Pro_dh: Proline dehyd 34.7 57 0.0012 28.6 4.0 158 41-214 92-283 (313)
256 PF01791 DeoC: DeoC/LacD famil 34.7 2E+02 0.0043 23.9 7.2 130 41-186 19-168 (236)
257 PRK14463 ribosomal RNA large s 34.3 3.4E+02 0.0074 24.3 10.9 87 129-215 211-325 (349)
258 PF06506 PrpR_N: Propionate ca 34.2 68 0.0015 25.4 4.1 69 140-213 63-134 (176)
259 PLN02880 tyrosine decarboxylas 34.1 1.9E+02 0.0041 27.1 7.6 92 110-219 190-284 (490)
260 PLN02775 Probable dihydrodipic 33.8 2.3E+02 0.005 24.7 7.5 59 113-175 67-125 (286)
261 PRK14466 ribosomal RNA large s 33.7 3.5E+02 0.0076 24.2 9.4 88 128-215 210-325 (345)
262 PRK14338 (dimethylallyl)adenos 33.3 4E+02 0.0086 24.7 10.3 123 38-175 184-330 (459)
263 COG0145 HyuA N-methylhydantoin 33.3 4.1E+02 0.009 26.2 9.9 98 37-136 135-243 (674)
264 cd08556 GDPD Glycerophosphodie 33.2 2.3E+02 0.005 21.9 9.0 131 39-212 11-168 (189)
265 cd00405 PRAI Phosphoribosylant 33.2 1.7E+02 0.0036 23.6 6.4 67 118-186 15-82 (203)
266 cd00959 DeoC 2-deoxyribose-5-p 33.1 2.6E+02 0.0057 22.6 15.2 130 39-184 15-151 (203)
267 PF02679 ComA: (2R)-phospho-3- 32.9 46 0.001 28.2 3.0 97 112-209 25-131 (244)
268 COG1104 NifS Cysteine sulfinat 32.8 99 0.0021 28.1 5.2 77 141-219 102-186 (386)
269 PTZ00124 adenosine deaminase; 32.8 3.7E+02 0.008 24.2 13.1 159 43-215 108-280 (362)
270 PRK12558 glutamyl-tRNA synthet 32.6 1E+02 0.0022 28.6 5.4 61 104-172 47-107 (445)
271 KOG0996 Structural maintenance 32.4 37 0.0008 35.0 2.7 74 141-217 600-678 (1293)
272 PRK10200 putative racemase; Pr 32.3 2.1E+02 0.0046 23.8 7.0 64 105-169 14-89 (230)
273 cd02933 OYE_like_FMN Old yello 32.3 3.6E+02 0.0078 23.9 13.9 94 86-183 220-313 (338)
274 PRK11613 folP dihydropteroate 31.8 3.4E+02 0.0074 23.5 9.8 100 105-211 35-140 (282)
275 PF00697 PRAI: N-(5'phosphorib 31.6 63 0.0014 26.2 3.6 66 116-185 13-79 (197)
276 cd00945 Aldolase_Class_I Class 31.6 2.5E+02 0.0054 21.9 8.8 98 39-153 11-109 (201)
277 TIGR03470 HpnH hopanoid biosyn 31.5 3.6E+02 0.0077 23.6 9.3 35 139-173 147-184 (318)
278 TIGR03278 methan_mark_10 putat 31.2 4.2E+02 0.009 24.3 9.3 120 35-164 83-205 (404)
279 PRK09358 adenosine deaminase; 31.2 3.6E+02 0.0078 23.6 13.3 105 107-215 148-253 (340)
280 PRK08255 salicylyl-CoA 5-hydro 31.2 5.4E+02 0.012 25.6 13.5 157 38-206 541-737 (765)
281 PRK14462 ribosomal RNA large s 31.1 3.9E+02 0.0086 24.0 10.6 86 130-215 225-338 (356)
282 COG2200 Rtn c-di-GMP phosphodi 30.8 3.3E+02 0.0071 22.9 10.7 159 43-223 51-240 (256)
283 PRK02083 imidazole glycerol ph 30.7 3.2E+02 0.007 22.8 12.8 87 116-207 160-251 (253)
284 PRK07810 O-succinylhomoserine 30.6 3E+02 0.0064 25.0 8.1 56 163-218 142-199 (403)
285 KOG0059 Lipid exporter ABCA1 a 30.3 3.2E+02 0.0069 27.8 8.9 69 105-175 670-767 (885)
286 cd00959 DeoC 2-deoxyribose-5-p 30.0 3E+02 0.0065 22.2 7.4 71 39-124 129-203 (203)
287 PRK00915 2-isopropylmalate syn 29.9 4.8E+02 0.011 24.6 16.3 180 39-221 24-238 (513)
288 PRK11858 aksA trans-homoaconit 29.8 4.2E+02 0.0091 23.9 13.5 179 39-221 24-230 (378)
289 cd08562 GDPD_EcUgpQ_like Glyce 29.7 3E+02 0.0066 22.3 8.4 22 39-60 11-32 (229)
290 PRK14040 oxaloacetate decarbox 29.6 5.3E+02 0.011 25.0 18.0 24 37-60 23-46 (593)
291 cd08606 GDPD_YPL110cp_fungi Gl 29.4 3.6E+02 0.0077 23.0 12.4 29 147-175 156-184 (286)
292 COG2109 BtuR ATP:corrinoid ade 29.4 2.8E+02 0.0062 22.7 6.8 117 41-172 43-173 (198)
293 PF00762 Ferrochelatase: Ferro 29.3 1.7E+02 0.0038 25.7 6.2 52 107-159 206-258 (316)
294 PLN02438 inositol-3-phosphate 29.1 3.4E+02 0.0073 25.7 8.1 49 107-155 206-258 (510)
295 COG0135 TrpF Phosphoribosylant 29.1 2.9E+02 0.0063 22.8 7.0 100 39-165 11-111 (208)
296 PRK14465 ribosomal RNA large s 29.1 4.2E+02 0.0091 23.7 9.8 88 128-215 215-329 (342)
297 KOG0258 Alanine aminotransfera 29.0 2E+02 0.0044 26.4 6.4 49 115-163 175-223 (475)
298 cd00419 Ferrochelatase_C Ferro 29.0 2.6E+02 0.0055 21.2 9.8 81 72-155 6-91 (135)
299 PRK07671 cystathionine beta-ly 28.8 3.5E+02 0.0076 24.2 8.2 55 164-218 122-178 (377)
300 COG5310 Homospermidine synthas 28.7 4.4E+02 0.0095 23.8 9.9 180 1-209 1-211 (481)
301 cd02742 GH20_hexosaminidase Be 28.7 81 0.0018 27.4 4.0 17 194-210 75-91 (303)
302 KOG0023 Alcohol dehydrogenase, 28.6 3.7E+02 0.008 24.1 7.8 147 6-206 172-323 (360)
303 PRK10508 hypothetical protein; 28.4 99 0.0021 27.4 4.5 41 105-150 286-326 (333)
304 PRK06176 cystathionine gamma-s 28.4 3.7E+02 0.0079 24.2 8.3 55 164-218 122-178 (380)
305 cd08568 GDPD_TmGDE_like Glycer 28.2 2.6E+02 0.0055 22.9 6.8 22 39-60 12-33 (226)
306 TIGR00433 bioB biotin syntheta 28.1 3.8E+02 0.0081 22.8 12.4 119 38-173 62-193 (296)
307 PF03599 CdhD: CO dehydrogenas 27.9 2.9E+02 0.0063 25.2 7.3 83 125-214 69-154 (386)
308 cd03527 RuBisCO_small Ribulose 27.7 2.4E+02 0.0051 20.4 9.7 75 36-133 10-85 (99)
309 PRK08123 histidinol-phosphatas 27.7 3.8E+02 0.0082 22.7 11.0 24 41-64 19-42 (270)
310 PRK14463 ribosomal RNA large s 27.7 3.3E+02 0.0071 24.4 7.7 71 102-174 128-203 (349)
311 PRK08045 cystathionine gamma-s 27.7 3.7E+02 0.008 24.2 8.2 88 127-218 92-181 (386)
312 PF00388 PI-PLC-X: Phosphatidy 27.6 50 0.0011 25.2 2.2 18 44-61 29-46 (146)
313 TIGR02109 PQQ_syn_pqqE coenzym 27.2 4.3E+02 0.0094 23.2 11.8 23 38-60 37-59 (358)
314 COG2022 ThiG Uncharacterized e 27.1 2.9E+02 0.0062 23.5 6.6 70 104-174 79-149 (262)
315 PF10171 DUF2366: Uncharacteri 27.0 1.3E+02 0.0029 24.0 4.5 39 125-163 77-115 (173)
316 PF04748 Polysacc_deac_2: Dive 26.9 3.1E+02 0.0066 22.6 6.9 52 38-92 71-128 (213)
317 PRK13561 putative diguanylate 26.9 2.5E+02 0.0054 27.1 7.4 70 140-211 533-611 (651)
318 COG0820 Predicted Fe-S-cluster 26.7 4.7E+02 0.01 23.5 9.4 162 34-216 125-331 (349)
319 PLN02590 probable tyrosine dec 26.7 3.1E+02 0.0068 26.2 7.7 27 193-219 306-332 (539)
320 COG2949 SanA Uncharacterized m 26.6 3.8E+02 0.0082 22.3 8.7 98 107-212 75-181 (235)
321 PLN02520 bifunctional 3-dehydr 26.6 5.6E+02 0.012 24.3 15.0 156 39-210 33-198 (529)
322 PLN02607 1-aminocyclopropane-1 26.6 3.3E+02 0.0072 25.1 7.8 21 194-214 223-243 (447)
323 TIGR01212 radical SAM protein, 26.5 4.3E+02 0.0093 22.9 9.2 64 105-172 91-156 (302)
324 PRK08099 bifunctional DNA-bind 26.5 3.8E+02 0.0083 24.4 8.0 95 53-152 291-395 (399)
325 TIGR00190 thiC thiamine biosyn 26.4 5.1E+02 0.011 23.8 10.6 104 39-159 75-180 (423)
326 PRK08861 cystathionine gamma-s 26.4 4.9E+02 0.011 23.5 10.7 90 126-219 92-183 (388)
327 PF00563 EAL: EAL domain; Int 26.4 2E+02 0.0043 23.1 5.8 66 142-211 135-210 (236)
328 TIGR02090 LEU1_arch isopropylm 26.4 4.7E+02 0.01 23.4 15.3 25 38-62 19-43 (363)
329 TIGR02026 BchE magnesium-proto 26.3 5.5E+02 0.012 24.1 10.7 107 103-213 220-345 (497)
330 PF05913 DUF871: Bacterial pro 26.2 50 0.0011 29.7 2.2 172 39-231 12-194 (357)
331 PLN02509 cystathionine beta-ly 26.2 3.1E+02 0.0067 25.6 7.5 56 163-218 204-261 (464)
332 PF01890 CbiG_C: Cobalamin syn 26.1 1.6E+02 0.0034 21.9 4.7 64 103-173 10-73 (121)
333 PF07994 NAD_binding_5: Myo-in 26.0 1.7E+02 0.0037 25.6 5.4 95 106-209 130-230 (295)
334 PRK11267 biopolymer transport 25.7 1.7E+02 0.0038 22.2 5.0 54 105-163 81-134 (141)
335 PRK05718 keto-hydroxyglutarate 25.7 3.8E+02 0.0083 22.1 7.9 86 106-208 25-112 (212)
336 PRK12331 oxaloacetate decarbox 25.7 5.5E+02 0.012 23.9 18.4 25 37-61 22-46 (448)
337 PRK09536 btuD corrinoid ABC tr 25.6 2.3E+02 0.005 25.9 6.5 74 143-216 279-352 (402)
338 COG1131 CcmA ABC-type multidru 25.6 4.4E+02 0.0095 22.7 8.1 63 109-174 140-205 (293)
339 PRK04311 selenocysteine syntha 25.5 3.8E+02 0.0082 25.0 8.0 67 150-218 188-262 (464)
340 COG4130 Predicted sugar epimer 25.2 2.2E+02 0.0047 23.9 5.5 56 165-220 50-112 (272)
341 COG4626 Phage terminase-like p 25.2 3.4E+02 0.0073 26.0 7.5 74 137-213 409-485 (546)
342 TIGR02668 moaA_archaeal probab 25.1 4.4E+02 0.0095 22.6 12.2 130 37-187 39-187 (302)
343 COG2874 FlaH Predicted ATPases 25.1 4.2E+02 0.009 22.3 9.1 148 10-172 18-178 (235)
344 TIGR01325 O_suc_HS_sulf O-succ 25.0 4E+02 0.0087 23.8 7.9 54 164-217 127-182 (380)
345 PRK07114 keto-hydroxyglutarate 24.9 4.1E+02 0.0089 22.1 7.5 50 39-90 25-76 (222)
346 PF04481 DUF561: Protein of un 24.8 3.4E+02 0.0074 22.8 6.6 25 39-63 25-49 (242)
347 PRK08084 DNA replication initi 24.7 1.3E+02 0.0029 24.9 4.5 45 125-169 97-145 (235)
348 cd08561 GDPD_cytoplasmic_ScUgp 24.7 3.2E+02 0.007 22.7 6.9 71 142-212 119-220 (249)
349 TIGR01660 narH nitrate reducta 24.6 32 0.0007 31.9 0.7 53 154-206 264-317 (492)
350 PRK04527 argininosuccinate syn 24.6 3.9E+02 0.0085 24.5 7.7 74 39-135 40-118 (400)
351 TIGR03849 arch_ComA phosphosul 24.4 4.1E+02 0.0089 22.5 7.2 84 42-133 72-155 (237)
352 PF07302 AroM: AroM protein; 24.4 4.2E+02 0.0091 22.1 14.2 164 39-215 11-189 (221)
353 cd05560 Xcc1710_like Xcc1710_l 24.2 2.6E+02 0.0057 20.3 5.4 51 161-212 37-87 (109)
354 cd01965 Nitrogenase_MoFe_beta_ 24.0 5.6E+02 0.012 23.4 10.3 104 63-183 62-188 (428)
355 smart00148 PLCXc Phospholipase 24.0 68 0.0015 24.3 2.3 19 43-61 30-48 (135)
356 PRK08248 O-acetylhomoserine am 23.9 5.7E+02 0.012 23.5 10.9 61 156-216 129-191 (431)
357 TIGR02660 nifV_homocitr homoci 23.9 5.3E+02 0.011 23.1 15.3 177 38-221 20-227 (365)
358 COG0800 Eda 2-keto-3-deoxy-6-p 23.9 2.4E+02 0.0053 23.3 5.6 58 140-208 51-110 (211)
359 TIGR00238 KamA family protein. 23.7 5.1E+02 0.011 22.8 9.8 103 40-155 144-251 (331)
360 COG2425 Uncharacterized protei 23.7 6E+02 0.013 23.6 8.8 64 110-174 349-417 (437)
361 PRK14455 ribosomal RNA large s 23.6 5.4E+02 0.012 23.1 8.5 88 129-216 223-338 (356)
362 PRK02412 aroD 3-dehydroquinate 23.6 4.5E+02 0.0097 22.2 12.8 118 39-172 93-214 (253)
363 TIGR01093 aroD 3-dehydroquinat 23.5 4.2E+02 0.0091 21.8 12.6 119 39-173 76-197 (228)
364 TIGR00044 pyridoxal phosphate 23.4 3.6E+02 0.0077 22.3 6.8 51 107-165 8-60 (229)
365 TIGR00789 flhB_rel flhB C-term 23.4 41 0.00089 23.3 0.9 36 194-230 30-65 (82)
366 TIGR02631 xylA_Arthro xylose i 23.4 5.6E+02 0.012 23.2 13.3 40 22-61 8-52 (382)
367 COG1879 RbsB ABC-type sugar tr 23.2 4.8E+02 0.01 22.3 9.6 61 107-172 48-108 (322)
368 PRK13523 NADPH dehydrogenase N 23.2 5.3E+02 0.011 22.8 11.9 91 85-183 208-304 (337)
369 PF08734 GYD: GYD domain; Int 22.8 2.7E+02 0.006 19.4 7.4 66 108-173 19-90 (91)
370 COG2055 Malate/L-lactate dehyd 22.7 5.7E+02 0.012 23.0 8.4 87 105-209 6-113 (349)
371 TIGR01856 hisJ_fam histidinol 22.6 4.6E+02 0.01 21.9 13.9 83 41-135 15-114 (253)
372 PF00875 DNA_photolyase: DNA p 22.6 2.4E+02 0.0052 21.7 5.3 19 193-211 106-124 (165)
373 cd01297 D-aminoacylase D-amino 22.5 5.8E+02 0.013 23.1 11.0 123 41-175 167-298 (415)
374 PRK10060 RNase II stability mo 22.4 7.2E+02 0.016 24.1 11.8 100 108-211 507-618 (663)
375 PHA02128 hypothetical protein 22.4 3.2E+02 0.0069 20.0 5.4 70 141-210 60-150 (151)
376 TIGR01163 rpe ribulose-phospha 22.4 4E+02 0.0087 21.2 9.7 99 105-207 8-107 (210)
377 PF00101 RuBisCO_small: Ribulo 22.4 3.1E+02 0.0066 19.8 7.7 75 37-134 10-85 (99)
378 COG1167 ARO8 Transcriptional r 22.3 6.3E+02 0.014 23.4 13.7 149 38-214 104-270 (459)
379 PF01120 Alpha_L_fucos: Alpha- 22.2 93 0.002 27.7 3.2 24 191-214 138-161 (346)
380 COG3454 Metal-dependent hydrol 22.2 68 0.0015 28.5 2.2 17 194-210 213-229 (377)
381 cd00668 Ile_Leu_Val_MetRS_core 21.9 1.5E+02 0.0032 25.8 4.4 49 107-158 81-131 (312)
382 PRK04165 acetyl-CoA decarbonyl 21.9 6.6E+02 0.014 23.5 11.3 99 105-212 102-209 (450)
383 PRK13602 putative ribosomal pr 21.9 2.7E+02 0.0059 19.0 5.5 56 147-211 3-60 (82)
384 PF11590 DNAPolymera_Pol: DNA 21.9 67 0.0014 19.0 1.4 32 20-52 7-38 (41)
385 COG0218 Predicted GTPase [Gene 21.8 4.5E+02 0.0098 21.6 8.2 100 41-153 91-198 (200)
386 cd08582 GDPD_like_2 Glyceropho 21.8 4.5E+02 0.0097 21.5 7.1 22 39-60 11-32 (233)
387 PRK08249 cystathionine gamma-s 21.7 5.7E+02 0.012 23.1 8.3 57 161-217 134-192 (398)
388 TIGR00736 nifR3_rel_arch TIM-b 21.7 4.8E+02 0.01 21.8 12.8 128 39-183 78-219 (231)
389 PRK14040 oxaloacetate decarbox 21.7 6E+02 0.013 24.6 8.7 99 105-207 24-140 (593)
390 PRK06084 O-acetylhomoserine am 21.6 4.2E+02 0.0092 24.2 7.5 55 164-218 131-187 (425)
391 PRK11024 colicin uptake protei 21.6 2.1E+02 0.0046 21.7 4.7 53 105-162 85-137 (141)
392 cd00885 cinA Competence-damage 21.6 2E+02 0.0044 22.7 4.7 44 43-89 21-65 (170)
393 cd08607 GDPD_GDE5 Glycerophosp 21.5 3.8E+02 0.0082 22.8 6.8 22 39-60 19-40 (290)
394 cd08590 PI-PLCc_Rv2075c_like C 21.5 4.9E+02 0.011 22.3 7.4 20 142-161 150-169 (267)
395 smart00481 POLIIIAc DNA polyme 21.5 94 0.002 20.0 2.4 17 194-210 18-34 (67)
396 PRK09776 putative diguanylate 21.4 1.6E+02 0.0034 30.2 5.1 101 107-211 939-1051(1092)
397 PRK10826 2-deoxyglucose-6-phos 21.4 3.4E+02 0.0073 21.9 6.2 35 140-175 94-128 (222)
398 PLN02449 ferrochelatase 21.4 5.6E+02 0.012 24.2 8.1 66 107-172 299-373 (485)
399 COG1149 MinD superfamily P-loo 21.4 2.1E+02 0.0045 24.8 4.9 88 118-216 156-251 (284)
400 PRK10558 alpha-dehydro-beta-de 21.3 2.9E+02 0.0062 23.5 5.9 68 146-214 9-79 (256)
401 PRK03031 rnpA ribonuclease P; 21.3 3.5E+02 0.0075 20.0 6.6 64 81-153 47-114 (122)
402 PRK07027 cobalamin biosynthesi 21.1 1.9E+02 0.0042 21.6 4.3 62 104-172 13-74 (126)
403 COG0710 AroD 3-dehydroquinate 21.1 5E+02 0.011 21.8 14.5 88 39-131 12-101 (231)
404 TIGR01108 oadA oxaloacetate de 21.1 6.2E+02 0.013 24.5 8.6 100 111-210 23-137 (582)
405 PRK05406 LamB/YcsF family prot 21.1 4E+02 0.0086 22.7 6.5 81 24-121 13-95 (246)
406 PF08013 Tagatose_6_P_K: Tagat 21.1 1.3E+02 0.0028 27.7 3.8 108 17-124 79-213 (424)
407 COG0647 NagD Predicted sugar p 21.0 4.7E+02 0.01 22.5 7.1 117 39-163 25-156 (269)
408 PRK15456 universal stress prot 21.0 1.6E+02 0.0035 21.8 3.9 35 182-216 83-117 (142)
409 PLN02489 homocysteine S-methyl 20.9 5.9E+02 0.013 22.5 16.8 170 38-212 52-275 (335)
410 cd07938 DRE_TIM_HMGL 3-hydroxy 20.9 5.3E+02 0.012 22.0 14.5 23 39-61 18-40 (274)
411 cd00945 Aldolase_Class_I Class 20.9 2.3E+02 0.005 22.0 5.1 80 39-127 63-147 (201)
412 PRK10997 yieM hypothetical pro 20.8 3.3E+02 0.0071 25.7 6.5 63 110-172 399-466 (487)
413 KOG2741 Dimeric dihydrodiol de 20.8 2.4E+02 0.0051 25.3 5.3 15 194-208 113-127 (351)
414 PRK15108 biotin synthase; Prov 20.7 6E+02 0.013 22.6 10.5 108 105-216 76-196 (345)
415 TIGR01326 OAH_OAS_sulfhy OAH/O 20.7 5.6E+02 0.012 23.3 8.1 54 164-217 130-185 (418)
416 PRK14456 ribosomal RNA large s 20.7 6.3E+02 0.014 22.8 8.6 88 128-215 237-353 (368)
417 PRK14461 ribosomal RNA large s 20.6 5.6E+02 0.012 23.2 7.7 95 82-176 106-225 (371)
418 PRK06361 hypothetical protein; 20.6 4.5E+02 0.0099 21.1 15.3 154 41-214 10-171 (212)
419 PRK02910 light-independent pro 20.6 7.3E+02 0.016 23.5 11.4 131 69-214 69-243 (519)
420 PLN02522 ATP citrate (pro-S)-l 20.6 1.9E+02 0.0041 28.1 5.0 29 67-95 234-262 (608)
421 COG0274 DeoC Deoxyribose-phosp 20.5 5.2E+02 0.011 21.7 7.9 75 39-125 138-213 (228)
422 PRK07269 cystathionine gamma-s 20.5 2.3E+02 0.0051 25.3 5.4 55 164-218 124-180 (364)
423 PRK05718 keto-hydroxyglutarate 20.5 4.9E+02 0.011 21.4 8.0 53 39-93 25-77 (212)
424 cd01973 Nitrogenase_VFe_beta_l 20.5 6.9E+02 0.015 23.2 10.8 113 61-183 65-194 (454)
425 cd00614 CGS_like CGS_like: Cys 20.4 6E+02 0.013 22.5 10.9 58 161-218 110-169 (369)
426 PRK14470 ribosomal RNA large s 20.4 6.1E+02 0.013 22.5 9.3 88 128-215 207-322 (336)
427 PRK12702 mannosyl-3-phosphogly 20.3 3.8E+02 0.0082 23.6 6.4 148 40-209 20-174 (302)
428 PF01680 SOR_SNZ: SOR/SNZ fami 20.3 54 0.0012 26.5 1.1 19 116-134 87-105 (208)
429 PRK04820 rnpA ribonuclease P; 20.3 3.9E+02 0.0085 20.6 5.9 54 39-123 64-117 (145)
430 cd01320 ADA Adenosine deaminas 20.3 5.7E+02 0.012 22.1 13.7 99 107-209 140-239 (325)
431 PRK14465 ribosomal RNA large s 20.2 6.3E+02 0.014 22.6 9.1 135 83-217 105-266 (342)
432 PRK12569 hypothetical protein; 20.2 4.4E+02 0.0096 22.4 6.6 83 24-121 14-98 (245)
433 PRK11059 regulatory protein Cs 20.2 5.5E+02 0.012 24.8 8.3 70 139-211 531-610 (640)
434 COG0419 SbcC ATPase involved i 20.1 2.3E+02 0.0049 28.9 5.8 56 112-169 826-886 (908)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=1e-53 Score=373.66 Aligned_cols=216 Identities=46% Similarity=0.742 Sum_probs=196.5
Q ss_pred cCceecCCCCccccceeecccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhcCC-CCCEE
Q 025500 8 VPRVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLP-REKIQ 86 (252)
Q Consensus 8 m~~~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~~~-R~~~~ 86 (252)
|.+|+||++|++||+||||||.+|+.+.. .+++++.++|++|+++||||||||+.||.|.||+++|++|++.+ |++++
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~~~-~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~Rd~vv 79 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDTDD-EEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKERGRRDKVV 79 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCCCc-hhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhccCCCCeEE
Confidence 78999999999999999999999975332 25567888999999999999999999999999999999999744 89999
Q ss_pred EEeccCccCCCCccc-ccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCC
Q 025500 87 VATKFGIAGIGVAGV-IVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS 165 (252)
Q Consensus 87 i~tK~~~~~~~~~~~-~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~ 165 (252)
|+||++.....+... ..+.+++++.++++.||+|||+||||+|++|+||...+.++++++|.+|+++|+||+||+||++
T Consensus 80 IaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~iG~S~~~ 159 (316)
T COG0667 80 IATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRYIGVSNYS 159 (316)
T ss_pred EEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCC
Confidence 999999876421111 3668999999999999999999999999999999989999999999999999999999999999
Q ss_pred HHHHHHHhhc-CCceEEeeecCccccchhhhHHHHHHHhCCeEEecccCccccCCCCCCC
Q 025500 166 PGTIRRAHAV-HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVV 224 (252)
Q Consensus 166 ~~~l~~~~~~-~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~ 224 (252)
.+++.++++. .+++++|.+||++++..+.+++++|+++||++++||||++|+|++++..
T Consensus 160 ~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~~ 219 (316)
T COG0667 160 AEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYLP 219 (316)
T ss_pred HHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccCCCcCC
Confidence 9999999998 5999999999999987777799999999999999999999999999765
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=2.7e-51 Score=353.30 Aligned_cols=225 Identities=47% Similarity=0.744 Sum_probs=202.6
Q ss_pred cccCceecCCCCccccceeecccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhc--CCCC
Q 025500 6 HQVPRVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPRE 83 (252)
Q Consensus 6 ~~m~~~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~--~~R~ 83 (252)
..|+++++|++|++||++|||||.+.. |+...+++++.++|++|+++|+||||||++||+|.+|..+|+++++ .+|+
T Consensus 10 ~~~~~~~lg~~gl~Vs~lglG~m~~~~-~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~~~R~ 88 (336)
T KOG1575|consen 10 LGMLRRKLGNSGLKVSPLGLGCMGWTT-FGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSRGWRRD 88 (336)
T ss_pred hcceeeeccCCCceecceeecceeeec-cccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhcCCcCC
Confidence 458999999999999999999974443 4444699999999999999999999999999999999999999998 7899
Q ss_pred CEEEEeccCccCCCCcccccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccC
Q 025500 84 KIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE 163 (252)
Q Consensus 84 ~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~ 163 (252)
+++|+||++.... +......+..++.+.++.|++||+++|||+|++||+|...+++++|++|.+++++|+|++||+|+
T Consensus 89 ~vviaTK~~~~~~--~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~yiGlSe 166 (336)
T KOG1575|consen 89 KVVIATKFGFDYG--GETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIRYWGLSE 166 (336)
T ss_pred cEEEEEEEeccCC--CcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceEEEEecc
Confidence 9999999998662 22355678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHhhcCC--ceEEeeecCccccchh-hhHHHHHHHhCCeEEecccCccccCCCCCC-CCCCCCCccc
Q 025500 164 ASPGTIRRAHAVHP--ITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFFGGKAV-VENVPADSFL 233 (252)
Q Consensus 164 ~~~~~l~~~~~~~~--~~~~q~~~~~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~L~~~~~-~~~~~~~~~~ 233 (252)
++.+++.+++...+ +.++|++||++.++.+ .++++.|++.||++++||||++|+|++++. .++.+.+...
T Consensus 167 ~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~~e~~~~~~~~ 240 (336)
T KOG1575|consen 167 WSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKLGEDSRNGDKR 240 (336)
T ss_pred CCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCccccccccccccc
Confidence 99999999998876 9999999999999854 679999999999999999999999999954 3555555543
No 3
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=4.7e-50 Score=339.52 Aligned_cols=220 Identities=30% Similarity=0.489 Sum_probs=184.3
Q ss_pred cCceecCCCCccccceeecccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhc--CCCCCE
Q 025500 8 VPRVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPREKI 85 (252)
Q Consensus 8 m~~~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~--~~R~~~ 85 (252)
+.+.++ ++|.+||.||||||++++ .+...+++.+|++.|+|+||||..|| +|+.+|+++++ ++|+++
T Consensus 3 ~~~~~l-~~g~~iP~iGlGt~~~~~-------~~~~~~av~~Al~~Gyr~IDTA~~Yg---nE~~VG~aI~~s~v~Reel 71 (280)
T COG0656 3 KTKVTL-NNGVEIPAIGLGTWQIGD-------DEWAVRAVRAALELGYRLIDTAEIYG---NEEEVGEAIKESGVPREEL 71 (280)
T ss_pred Cceeec-CCCCcccCcceEeeecCC-------chhHHHHHHHHHHhCcceEecHhHhc---CHHHHHHHHHhcCCCHHHe
Confidence 456677 678889999999999864 23389999999999999999999999 89999999998 899999
Q ss_pred EEEeccCccCCCCcccccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCC--CCHHHHHHHHHHHHHcCCccEEEccC
Q 025500 86 QVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS--VPIEETIGEMKKLVEEGKIKYIGLSE 163 (252)
Q Consensus 86 ~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~--~~~~~~~~~L~~l~~~G~ir~iGvs~ 163 (252)
||+||+|... .+++.+.+++++||+|||+||+|||++|||... ..+.++|++|++++++|+||+|||||
T Consensus 72 FittKvw~~~---------~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSN 142 (280)
T COG0656 72 FITTKVWPSD---------LGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSN 142 (280)
T ss_pred EEEeecCCcc---------CCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEeeC
Confidence 9999999765 468899999999999999999999999999752 23689999999999999999999999
Q ss_pred CCHHHHHHHhhc--CCceEEeeecCccccchhhhHHHHHHHhCCeEEecccCcccc-CCCCCC-------CCCCCCCccc
Q 025500 164 ASPGTIRRAHAV--HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGF-FGGKAV-------VENVPADSFL 233 (252)
Q Consensus 164 ~~~~~l~~~~~~--~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~-L~~~~~-------~~~~~~~~~~ 233 (252)
|+.++|+++++. ..|.++|++||++.+.. +++++|+++||.++|||||+.|. |..... ... .+.+.+
T Consensus 143 F~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~--el~~~~~~~gI~v~AysPL~~g~~l~~~~~l~~Ia~k~g~-t~AQv~ 219 (280)
T COG0656 143 FGVEHLEELLSLAKVKPAVNQIEYHPYLRQP--ELLPFCQRHGIAVEAYSPLAKGGKLLDNPVLAEIAKKYGK-TPAQVA 219 (280)
T ss_pred CCHHHHHHHHHhcCCCCceEEEEeccCCCcH--HHHHHHHHcCCEEEEECCcccccccccChHHHHHHHHhCC-CHHHHH
Confidence 999999999876 45899999999999974 59999999999999999999654 444321 111 233333
Q ss_pred cccCC--ccccccCccccc
Q 025500 234 VLFSV--NVYPHHFVSSVS 250 (252)
Q Consensus 234 ~~~~~--~~~~~~~~~~~~ 250 (252)
+.|.. ..+++|-.++++
T Consensus 220 L~W~i~~gv~~Ipks~~~~ 238 (280)
T COG0656 220 LRWHIQRGVIVIPKSTTPE 238 (280)
T ss_pred HHHHHhCCcEEecCCCCHH
Confidence 43332 367777776654
No 4
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=3.4e-48 Score=344.02 Aligned_cols=214 Identities=28% Similarity=0.513 Sum_probs=185.2
Q ss_pred cccCceecCCCCccccceeecccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEeCcCCcCC--CcHHHHHHHHHhc---C
Q 025500 6 HQVPRVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQ--NANEVLLGKALKQ---L 80 (252)
Q Consensus 6 ~~m~~~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~--g~se~~ig~~l~~---~ 80 (252)
..|++|+||++|++||+||||||+. +|...+.+++.+++++|+++|||+||||+.||+ |.+|+.+|++|+. .
T Consensus 11 ~~m~~r~lg~tg~~vs~lglG~~~~---~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~~~ 87 (346)
T PRK09912 11 GQMQYRYCGKSGLRLPALSLGLWHN---FGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAA 87 (346)
T ss_pred CCcceeecCCCCcccccccccCccc---cCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcccC
Confidence 4589999999999999999999973 222336788899999999999999999999995 8999999999985 2
Q ss_pred CCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEE
Q 025500 81 PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIG 160 (252)
Q Consensus 81 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iG 160 (252)
+|++++|+||++....+. ......+++.+++++++||+|||+||||+|++|+|+...+.+++|++|++|+++|+||+||
T Consensus 88 ~Rd~~~I~TK~g~~~~~~-~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~GkIr~iG 166 (346)
T PRK09912 88 YRDELIISTKAGYDMWPG-PYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVG 166 (346)
T ss_pred CCCeEEEEEEecccCCCC-cCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEE
Confidence 699999999997531111 1112357999999999999999999999999999988778999999999999999999999
Q ss_pred ccCCCHHHHHHHhhc-----CCceEEeeecCccccchh-hhHHHHHHHhCCeEEecccCccccCCCCCC
Q 025500 161 LSEASPGTIRRAHAV-----HPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFFGGKAV 223 (252)
Q Consensus 161 vs~~~~~~l~~~~~~-----~~~~~~q~~~~~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~L~~~~~ 223 (252)
||||+.++++++.+. .++.++|++||++++..+ .+++++|+++||+|++|+||++|+|++++.
T Consensus 167 vSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~~~ 235 (346)
T PRK09912 167 ISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYL 235 (346)
T ss_pred ecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCCCC
Confidence 999999988766542 367899999999998654 579999999999999999999999999853
No 5
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=4.9e-48 Score=339.40 Aligned_cols=210 Identities=32% Similarity=0.495 Sum_probs=183.7
Q ss_pred ceecCCCCccccceeecccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhc--CCCCCEEE
Q 025500 10 RVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPREKIQV 87 (252)
Q Consensus 10 ~~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~--~~R~~~~i 87 (252)
||+||++|++||+||||||++++ ...+.+++.++++.|+++|||+||||+.||.|.||+.+|++|+. .+|++++|
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~~g---~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~~~~i 77 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVTFG---GQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKKGWRRSSYVI 77 (317)
T ss_pred CcccCCCCCeecceeecCCccCC---CCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhcCCCcccEEE
Confidence 58899999999999999997432 23478899999999999999999999999999999999999985 46999999
Q ss_pred EeccCccCCCCcccccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCCHH
Q 025500 88 ATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPG 167 (252)
Q Consensus 88 ~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~ 167 (252)
+||+++.... ...+..+++.+++++++||+|||+||||+|++|||+...+.+++|++|++|+++|+||+||+||++.+
T Consensus 78 aTK~~~~~~~--~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir~iGvSn~~~~ 155 (317)
T TIGR01293 78 TTKIFWGGKA--ETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAMYWGTSRWSSM 155 (317)
T ss_pred EeeeccCCCC--CCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHH
Confidence 9998643210 01234679999999999999999999999999999887788999999999999999999999999999
Q ss_pred HHHHHhhc------CCceEEeeecCccccch-hhhHHHHHHHhCCeEEecccCccccCCCCCCC
Q 025500 168 TIRRAHAV------HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRGFFGGKAVV 224 (252)
Q Consensus 168 ~l~~~~~~------~~~~~~q~~~~~~~~~~-~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~ 224 (252)
++.++... .+++++|++||++++.. +.+++++|+++||++++|+||++|+|++++..
T Consensus 156 ~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~ 219 (317)
T TIGR01293 156 EIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDS 219 (317)
T ss_pred HHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCC
Confidence 98776432 46789999999999874 56899999999999999999999999998643
No 6
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=1.3e-47 Score=331.63 Aligned_cols=207 Identities=46% Similarity=0.744 Sum_probs=189.0
Q ss_pred ceecCCCCccccceeecccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhcCC-CCCEEEE
Q 025500 10 RVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLP-REKIQVA 88 (252)
Q Consensus 10 ~~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~~~-R~~~~i~ 88 (252)
+|+||++|++||+||||||.++..+ .+.+++.+++++|++.|||+||||+.||+|.+|+.+|++|+..+ |++++|+
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~---~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~ 77 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGY---VDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIA 77 (285)
T ss_pred CcccCCCCceecCcceeccccCCCC---CCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEE
Confidence 5789999999999999999988654 37899999999999999999999999999999999999999854 9999999
Q ss_pred eccCccCCCCcccccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCC-HHHHHHHHHHHHHcCCccEEEccCCCHH
Q 025500 89 TKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVP-IEETIGEMKKLVEEGKIKYIGLSEASPG 167 (252)
Q Consensus 89 tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~-~~~~~~~L~~l~~~G~ir~iGvs~~~~~ 167 (252)
||++..... .++.+++.+++++++||++|++||||+|++|+|+.... ..++|++|++++++|+||+||+||++.+
T Consensus 78 tK~~~~~~~----~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~ 153 (285)
T cd06660 78 TKVGPRPGD----GRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSAE 153 (285)
T ss_pred eeecCCCCC----CCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCHH
Confidence 999865421 14568999999999999999999999999999987665 8899999999999999999999999999
Q ss_pred HHHHHhhc--CCceEEeeecCccccchhhhHHHHHHHhCCeEEecccCccccCCCCCC
Q 025500 168 TIRRAHAV--HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAV 223 (252)
Q Consensus 168 ~l~~~~~~--~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~ 223 (252)
.++++... .+|+++|++||++++..+.+++++|+++||+|++|+||++|.|++++.
T Consensus 154 ~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~ 211 (285)
T cd06660 154 QLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYL 211 (285)
T ss_pred HHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCC
Confidence 99999887 799999999999999865579999999999999999999999987754
No 7
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=2.2e-47 Score=338.96 Aligned_cols=213 Identities=29% Similarity=0.416 Sum_probs=182.6
Q ss_pred cCceecCCCCccccceeecccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEeCcCCcC-------CCcHHHHHHHHHhc-
Q 025500 8 VPRVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYG-------QNANEVLLGKALKQ- 79 (252)
Q Consensus 8 m~~~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg-------~g~se~~ig~~l~~- 79 (252)
|++|+||++|+.||+||||||++|. ..+.+++.++++.|++.|||+||||+.|| .|.+|+.+|++|+.
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~----~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~ 76 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGE----QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR 76 (346)
T ss_pred CCceecCCCCCccccEeEeccccCC----CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc
Confidence 6789999999999999999999874 23688999999999999999999999998 48899999999985
Q ss_pred CCCCCEEEEeccCccCCCCcc---cccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCC-----------------CCC
Q 025500 80 LPREKIQVATKFGIAGIGVAG---VIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT-----------------SVP 139 (252)
Q Consensus 80 ~~R~~~~i~tK~~~~~~~~~~---~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~-----------------~~~ 139 (252)
.+|++++|+||++........ .....+++.+++++++||+|||+||||+|++|||+. ..+
T Consensus 77 ~~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T PRK10625 77 GSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVS 156 (346)
T ss_pred CCcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCC
Confidence 469999999998642110000 012468999999999999999999999999999964 235
Q ss_pred HHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhc------CCceEEeeecCccccchhhhHHHHHHHhCCeEEecccC
Q 025500 140 IEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV------HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPL 213 (252)
Q Consensus 140 ~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~------~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl 213 (252)
+.++|++|++|+++|+||+||+|||+.++++++... ..+.++|++||++++..+.+++++|+++||++++|+||
T Consensus 157 ~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL 236 (346)
T PRK10625 157 LLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCL 236 (346)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccc
Confidence 789999999999999999999999999988776431 35788999999999876678999999999999999999
Q ss_pred ccccCCCCCCC
Q 025500 214 GRGFFGGKAVV 224 (252)
Q Consensus 214 ~~G~L~~~~~~ 224 (252)
++|+|++++..
T Consensus 237 ~~G~Ltg~~~~ 247 (346)
T PRK10625 237 AFGTLTGKYLN 247 (346)
T ss_pred cCeeccCCCCC
Confidence 99999998543
No 8
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=1.3e-47 Score=336.29 Aligned_cols=206 Identities=34% Similarity=0.576 Sum_probs=178.2
Q ss_pred ceecCCCCccccceeecccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhc--CCCCCEEE
Q 025500 10 RVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPREKIQV 87 (252)
Q Consensus 10 ~~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~--~~R~~~~i 87 (252)
||+||+||++||+||||||++|+.|+. .+.+++.+++++|++.|||+||||+.||.|.+|+.+|++|+. .+|++++|
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~-~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~~~R~~v~I 79 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGP-VSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKALGIPREKYVV 79 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCC-CCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhCCCCcceEEE
Confidence 688999999999999999999876654 478999999999999999999999999999999999999997 47999999
Q ss_pred EeccCccCCCCcccccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCC---CCHHHHHHHHHHHHHcCCccEEEccCC
Q 025500 88 ATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS---VPIEETIGEMKKLVEEGKIKYIGLSEA 164 (252)
Q Consensus 88 ~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~---~~~~~~~~~L~~l~~~G~ir~iGvs~~ 164 (252)
+||++.... ..+.+++.+++++++||+|||+||||+|++|+|+.. ..++++|++|++|+++|+||+||+||+
T Consensus 80 ~TK~~~~~~-----~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~ 154 (314)
T PLN02587 80 STKCGRYGE-----GFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITGL 154 (314)
T ss_pred EeccccCCC-----CCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 999984321 124679999999999999999999999999999642 245689999999999999999999999
Q ss_pred CHHHHHHHhhc---C--CceEEeeecCccccchhhhHHHHHHHhCCeEEecccCccccCCCCC
Q 025500 165 SPGTIRRAHAV---H--PITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKA 222 (252)
Q Consensus 165 ~~~~l~~~~~~---~--~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~ 222 (252)
+.++++.+... . .+..+|+.||+.++.. .+++++|+++||++++|+||++|+|+++.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~spl~~G~L~~~~ 216 (314)
T PLN02587 155 PLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISASPLAMGLLTENG 216 (314)
T ss_pred CHHHHHHHHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEechhhccccCCCC
Confidence 99988776643 2 2333567888876543 58999999999999999999999999874
No 9
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=3.3e-46 Score=316.37 Aligned_cols=186 Identities=32% Similarity=0.490 Sum_probs=171.3
Q ss_pred ceecCCCCccccceeecccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhc------CCCC
Q 025500 10 RVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ------LPRE 83 (252)
Q Consensus 10 ~~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~------~~R~ 83 (252)
.++| ++|.+||.||||||+. ++.+...+++.|++.|+||||||..|+ +|+.+|++|++ ++|+
T Consensus 6 ~~~L-n~G~~mP~iGlGTw~~--------~~~~~~~aV~~Al~~GYRHIDtA~~Y~---NE~evG~aik~~i~~~~v~Re 73 (300)
T KOG1577|consen 6 TVKL-NNGFKMPIIGLGTWQS--------PPGQVAEAVKAAIKAGYRHIDTAHVYG---NEKEVGEAIKELLAEGGVKRE 73 (300)
T ss_pred eEec-cCCCccceeeeEeccc--------ChhhHHHHHHHHHHhCcceeechhhhC---ChHHHHHHHHHHhhhCCcchh
Confidence 6788 9999999999999983 678999999999999999999999999 89999999995 7999
Q ss_pred CEEEEeccCccCCCCcccccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCC----------------CCHHHHHHHH
Q 025500 84 KIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS----------------VPIEETIGEM 147 (252)
Q Consensus 84 ~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~----------------~~~~~~~~~L 147 (252)
++||+||+|... +.++.++.++++||++||+||+|+|++|||-.. .+..++|++|
T Consensus 74 diFiTSKlw~~~---------~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~am 144 (300)
T KOG1577|consen 74 DIFITSKLWPTD---------HAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAM 144 (300)
T ss_pred hheeeeccCccc---------cChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHH
Confidence 999999999765 568999999999999999999999999999553 3467899999
Q ss_pred HHHHHcCCccEEEccCCCHHHHHHHhhc--CCceEEeeecCccccchhhhHHHHHHHhCCeEEecccCccccC
Q 025500 148 KKLVEEGKIKYIGLSEASPGTIRRAHAV--HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFF 218 (252)
Q Consensus 148 ~~l~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L 218 (252)
+++++.|++|+||||||+..+|++++.. .+|.++|+++|++.+. .+++++|+++||.|.|||||+.+.-
T Consensus 145 E~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q--~~L~~fCk~~~I~v~AYSpLg~~~~ 215 (300)
T KOG1577|consen 145 EKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQ--KKLVEFCKSKGIVVTAYSPLGSPGR 215 (300)
T ss_pred HHHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcCh--HHHHHHHhhCCcEEEEecCCCCCCC
Confidence 9999999999999999999999999876 6799999999998884 7899999999999999999998754
No 10
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=3.8e-44 Score=311.05 Aligned_cols=207 Identities=27% Similarity=0.459 Sum_probs=177.7
Q ss_pred cccCceecCCCCccccceeecccccCC--CCCCCCCHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhcCCCC
Q 025500 6 HQVPRVKLGTQGLEVSKLGYGCMNLSG--GYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPRE 83 (252)
Q Consensus 6 ~~m~~~~lg~~g~~vs~lglG~~~~g~--~~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~~~R~ 83 (252)
|+-.+++|+ |++||+||||||++|+ .||...+++++.++++.|++.|||+||||+.||+|.+|+.+|++++ ..|+
T Consensus 5 ~~~~~~~l~--g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~-~~R~ 81 (290)
T PRK10376 5 MSSGTFTLG--GRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALH-PYPD 81 (290)
T ss_pred ccCCceecC--CeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHh-cCCC
Confidence 445566774 9999999999999985 2565557889999999999999999999999999999999999997 3699
Q ss_pred CEEEEeccCccCCCCcccccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCC-----CCCHHHHHHHHHHHHHcCCccE
Q 025500 84 KIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT-----SVPIEETIGEMKKLVEEGKIKY 158 (252)
Q Consensus 84 ~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~-----~~~~~~~~~~L~~l~~~G~ir~ 158 (252)
+++|+||++.............+++.+++++++||+|||+||||+|++|+++. ..+..++|++|++|+++||||+
T Consensus 82 ~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gkir~ 161 (290)
T PRK10376 82 DLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGLVRH 161 (290)
T ss_pred eEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCceeE
Confidence 99999998753211111223467999999999999999999999999887421 2347889999999999999999
Q ss_pred EEccCCCHHHHHHHhhcCCceEEeeecCccccchhhhHHHHHHHhCCeEEecccCccc
Q 025500 159 IGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRG 216 (252)
Q Consensus 159 iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G 216 (252)
||||||+.++++++.+..+++++|++||++++.. .+++++|+++||++++|+||+++
T Consensus 162 iGvSn~~~~~l~~~~~~~~~~~~q~~~~~~~~~~-~~~~~~~~~~gi~v~a~~pL~g~ 218 (290)
T PRK10376 162 IGLSNVTPTQVAEARKIAEIVCVQNHYNLAHRAD-DALIDALARDGIAYVPFFPLGGF 218 (290)
T ss_pred EEecCCCHHHHHHHHhhCCeEEEecccCCCcCCh-HHHHHHHHHcCCEEEEeecCCCC
Confidence 9999999999999988888999999999998763 67999999999999999999854
No 11
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=2.2e-44 Score=311.23 Aligned_cols=196 Identities=40% Similarity=0.653 Sum_probs=171.8
Q ss_pred ceeecccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhc--CCCCCEEEEeccCccCCCCc
Q 025500 22 KLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPREKIQVATKFGIAGIGVA 99 (252)
Q Consensus 22 ~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~--~~R~~~~i~tK~~~~~~~~~ 99 (252)
+||||||++++. ..+.+++.++++.|++.|||+||||+.||+|.+|+.+|++|+. .+|++++|+||+... .
T Consensus 1 ~l~lG~~~~~~~---~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~~i~tK~~~~----~ 73 (283)
T PF00248_consen 1 PLGLGTWRLGGE---RVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRDDIFISTKVYGD----G 73 (283)
T ss_dssp SBEEECTTBTTT---TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGGGSEEEEEEESS----S
T ss_pred CEEEEccccCCC---CCCHHHHHHHHHHHHHcCCCeecccccccccccccccccccccccccccccccccccccc----c
Confidence 589999999863 4589999999999999999999999999988999999999998 799999999999221 1
Q ss_pred ccccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCC-HHHHHHHHHHHHHcCCccEEEccCCCHHHHHHH--hhcC
Q 025500 100 GVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVP-IEETIGEMKKLVEEGKIKYIGLSEASPGTIRRA--HAVH 176 (252)
Q Consensus 100 ~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~-~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~--~~~~ 176 (252)
......+++.+++++++||++||+||+|+|++|+|+.... ..++|++|++|+++|+||+||||||+++.++++ ....
T Consensus 74 ~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 153 (283)
T PF00248_consen 74 KPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSI 153 (283)
T ss_dssp STGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS
T ss_pred cccccccccccccccccccccccccchhccccccccccccccchhhhhhhhccccccccccccccccccccccccccccc
Confidence 2345678999999999999999999999999999999888 899999999999999999999999999999999 5557
Q ss_pred CceEEeeecCccccchhhhHHHHHHHhCCeEEecccCccccCCCCCCC
Q 025500 177 PITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVV 224 (252)
Q Consensus 177 ~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~ 224 (252)
+|+++|++||++++....+++++|+++||++++|+||++|.|++++..
T Consensus 154 ~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~ 201 (283)
T PF00248_consen 154 PPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKS 201 (283)
T ss_dssp -ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTT
T ss_pred cccccccccccccccccccccccccccccccccccccccCcccccccc
Confidence 899999999999766668999999999999999999999999988543
No 12
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=1.3e-44 Score=313.77 Aligned_cols=191 Identities=19% Similarity=0.254 Sum_probs=168.0
Q ss_pred CccccceeecccccCCC-------CCCCCCHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhcCCCCCEEEEe
Q 025500 17 GLEVSKLGYGCMNLSGG-------YSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVAT 89 (252)
Q Consensus 17 g~~vs~lglG~~~~g~~-------~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~~~R~~~~i~t 89 (252)
+++||+||||||++|+. |+. ++++++.++++.|++.||||||||+.|| .+|+.+|++|+...+++++|+|
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~-~~~~ea~~~l~~A~~~Gin~~DTA~~YG--~SE~~lG~al~~~~~~~~~i~t 78 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGR-TPEAEARDILNIAARAGLSVLDASGLFG--RAETVLGQLIPRPVPFRVTLST 78 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCC-CCHHHHHHHHHHHHHcCCCEEecchhhh--hHHHHHhhhhccCCceEeeccc
Confidence 57899999999999864 343 5899999999999999999999999997 5999999999843346788888
Q ss_pred ccCccCCCCcccccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCC-CCH-HHHHHHHHHHHHcCCccEEEccCCCHH
Q 025500 90 KFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-VPI-EETIGEMKKLVEEGKIKYIGLSEASPG 167 (252)
Q Consensus 90 K~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-~~~-~~~~~~L~~l~~~G~ir~iGvs~~~~~ 167 (252)
|.. +.+++.+++++++||+|||+||||+|++|+|+.. .+. +++|++|++|+++|+||+|||||++++
T Consensus 79 k~~-----------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~ 147 (292)
T PRK14863 79 VRA-----------DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHASD 147 (292)
T ss_pred ccc-----------cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCHH
Confidence 842 1358999999999999999999999999999753 223 578999999999999999999999999
Q ss_pred HHHHHhhcCCceEEeeecCccccchh-hhHHHHHHHhCCeEEecccCccccCCCC
Q 025500 168 TIRRAHAVHPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFFGGK 221 (252)
Q Consensus 168 ~l~~~~~~~~~~~~q~~~~~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~L~~~ 221 (252)
++.++....+|+++|++||++++..+ .+++++|+++||++++|+||++|+|++.
T Consensus 148 ~~~~~~~~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~ 202 (292)
T PRK14863 148 DPVGVARRFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLP 202 (292)
T ss_pred HHHHHHhcCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCC
Confidence 99888877899999999999998654 5799999999999999999999999864
No 13
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=4.4e-43 Score=300.97 Aligned_cols=181 Identities=27% Similarity=0.453 Sum_probs=162.3
Q ss_pred ccccceeecccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhc--CCCCCEEEEeccCccC
Q 025500 18 LEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPREKIQVATKFGIAG 95 (252)
Q Consensus 18 ~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~--~~R~~~~i~tK~~~~~ 95 (252)
++||+||||||+++ .+++.+++++|++.|||+||||+.|| +|+.+|++|+. .+|+++||+||++..
T Consensus 1 ~~vs~lglGt~~~~--------~~~~~~~i~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~v~i~TK~~~~- 68 (267)
T PRK11172 1 MSIPAFGLGTFRLK--------DQVVIDSVKTALELGYRAIDTAQIYD---NEAAVGQAIAESGVPRDELFITTKIWID- 68 (267)
T ss_pred CCCCCEeeEccccC--------hHHHHHHHHHHHHcCCCEEEccchhC---CHHHHHHHHHHcCCChhHeEEEEEeCCC-
Confidence 36999999999863 47799999999999999999999999 69999999985 579999999998532
Q ss_pred CCCcccccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCC--CCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHh
Q 025500 96 IGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS--VPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAH 173 (252)
Q Consensus 96 ~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~--~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~ 173 (252)
..+++.+++++++||+|||+||+|+|++|+|+.. .+..++|++|++++++|+||+||||||+.++++++.
T Consensus 69 --------~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~ 140 (267)
T PRK11172 69 --------NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAI 140 (267)
T ss_pred --------CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHH
Confidence 2568999999999999999999999999999653 467899999999999999999999999999999887
Q ss_pred hc---CCceEEeeecCccccchhhhHHHHHHHhCCeEEecccCccccCCC
Q 025500 174 AV---HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGG 220 (252)
Q Consensus 174 ~~---~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~ 220 (252)
+. .+++++|++||++++. .+++++|+++||+|++|+||++|.+..
T Consensus 141 ~~~~~~~~~~~Q~~~~~~~~~--~~ll~~~~~~gi~v~a~spl~~G~~~~ 188 (267)
T PRK11172 141 AAVGAENIATNQIELSPYLQN--RKVVAFAKEHGIHVTSYMTLAYGKVLK 188 (267)
T ss_pred HhcCCCCCeEEeeecCCCCCc--HHHHHHHHHCCCEEEEECCCCCCcccC
Confidence 64 3689999999999874 689999999999999999999997654
No 14
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=1e-43 Score=290.04 Aligned_cols=239 Identities=28% Similarity=0.381 Sum_probs=207.6
Q ss_pred cCceecCCCCccccceeecccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhc--CCCCCE
Q 025500 8 VPRVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPREKI 85 (252)
Q Consensus 8 m~~~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~--~~R~~~ 85 (252)
|++..+++.|+.+|++.+|+|++.. |+. ..++....++.|++.|||+||.|+.||.|+.|+.+|.+|+- ..|+++
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d-~~~--~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~p~lReki 77 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND-WNM--SARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLAPGLREKI 77 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh-ccC--CHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcChhhhhhe
Confidence 6788999999999999999999975 543 56899999999999999999999999999999999999996 569999
Q ss_pred EEEeccCccCCCC---cccccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEcc
Q 025500 86 QVATKFGIAGIGV---AGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS 162 (252)
Q Consensus 86 ~i~tK~~~~~~~~---~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs 162 (252)
.|.||.+...... ....++.|.++|..++++||.||++||+|++++|+||+-.+.+++.+|+..|+++||||++|||
T Consensus 78 eivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKVr~fGVS 157 (298)
T COG4989 78 EIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKVRHFGVS 157 (298)
T ss_pred EeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCeeeeecC
Confidence 9999999765321 1235688999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhhc--CCceEEeeecCccccchh-hhHHHHHHHhCCeEEecccCccccCCCCC-C---------------
Q 025500 163 EASPGTIRRAHAV--HPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFFGGKA-V--------------- 223 (252)
Q Consensus 163 ~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~L~~~~-~--------------- 223 (252)
||++.+++-+... .++.+||+++|+++.+.- .+.+++|+++.|.+++||||++|.++... .
T Consensus 158 Nf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g~~~~q~l~~~l~~ia~e~ 237 (298)
T COG4989 158 NFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLGDDKFQRLRKVLDRIAEEY 237 (298)
T ss_pred CCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccCCcchHHHHHHHHHHHHHh
Confidence 9999999888776 457999999999998744 77999999999999999999999666531 1
Q ss_pred ---CCCCCCCccccccCCccccccCcccc
Q 025500 224 ---VENVPADSFLVLFSVNVYPHHFVSSV 249 (252)
Q Consensus 224 ---~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (252)
....-.-.|++++++...|+=|+.++
T Consensus 238 ga~s~~~VaiAWllR~Pa~~~PiiGt~~~ 266 (298)
T COG4989 238 GAVSITAVAIAWLLRHPAKPQPIIGTGNL 266 (298)
T ss_pred CcccHHHHHHHHHHhCcCcccceecCCCH
Confidence 00111346888999888888888765
No 15
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=2.5e-41 Score=291.16 Aligned_cols=182 Identities=31% Similarity=0.399 Sum_probs=163.3
Q ss_pred eecCCCCccccceeecccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhc--CCCCCEEEE
Q 025500 11 VKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPREKIQVA 88 (252)
Q Consensus 11 ~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~--~~R~~~~i~ 88 (252)
..| ++|+.||+||||||++ +.+++.+++++|++.|+|+||||+.|| +|+.+|++|+. .+|++++|+
T Consensus 7 ~~l-~~g~~v~~lglG~~~~--------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~~~i~ 74 (275)
T PRK11565 7 IKL-QDGNVMPQLGLGVWQA--------SNEEVITAIHKALEVGYRSIDTAAIYK---NEEGVGKALKEASVAREELFIT 74 (275)
T ss_pred EEc-CCCCccCCcceECccC--------CHHHHHHHHHHHHHhCCCEEEchhhhC---CHHHHHHHHHHcCCCHHHEEEE
Confidence 557 8999999999999975 468899999999999999999999998 79999999986 469999999
Q ss_pred eccCccCCCCcccccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCC-CHHHHHHHHHHHHHcCCccEEEccCCCHH
Q 025500 89 TKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV-PIEETIGEMKKLVEEGKIKYIGLSEASPG 167 (252)
Q Consensus 89 tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~-~~~~~~~~L~~l~~~G~ir~iGvs~~~~~ 167 (252)
||++. .+++.+++++++||+|||+||+|+|++|+|+... +..++|++|++|+++|+||+|||||++.+
T Consensus 75 tK~~~-----------~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~ 143 (275)
T PRK11565 75 TKLWN-----------DDHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQIH 143 (275)
T ss_pred EEecC-----------cchHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeeccCCHH
Confidence 99863 2467899999999999999999999999997643 46799999999999999999999999999
Q ss_pred HHHHHhhc--CCceEEeeecCccccchhhhHHHHHHHhCCeEEecccCcccc
Q 025500 168 TIRRAHAV--HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGF 217 (252)
Q Consensus 168 ~l~~~~~~--~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~ 217 (252)
+++++... ..+.++|++|+++.+. .+++++|+++||.+++|+||++|.
T Consensus 144 ~l~~~~~~~~v~~~~~Q~~~~~~~~~--~~~~~~~~~~~i~~~a~spl~~G~ 193 (275)
T PRK11565 144 HLQRLIDETGVTPVINQIELHPLMQQ--RQLHAWNATHKIQTESWSPLAQGG 193 (275)
T ss_pred HHHHHHHhCCCCceeeeeecCCccch--HHHHHHHHHCCCEEEEEccCCCCC
Confidence 99988754 3578999999998874 679999999999999999999773
No 16
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=7.5e-42 Score=281.25 Aligned_cols=226 Identities=30% Similarity=0.471 Sum_probs=196.9
Q ss_pred cCceecCCCCccccceeecccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhcCCCCCEEE
Q 025500 8 VPRVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQV 87 (252)
Q Consensus 8 m~~~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~~~R~~~~i 87 (252)
|.+|.+|+||++||+||||+..++..|+.. ++++....+..|++.|||+|||++.||.+++|+.+|.+++++||+.++|
T Consensus 22 meyR~lg~tgl~VSk~~fGga~L~~~fgd~-~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~vPR~aYyI 100 (342)
T KOG1576|consen 22 MEYRQLGSTGLRVSKLGFGGAALGQLFGDE-DEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDVPREAYYI 100 (342)
T ss_pred HHHhhcCCCcceeeeeeecchhhhhhcCCc-chhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhCChhheee
Confidence 889999999999999999999999988874 7888888788899999999999999999999999999999999999999
Q ss_pred EeccCccCCCCcccccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCC----CCHHHHHHHHHHHHHcCCccEEEccC
Q 025500 88 ATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS----VPIEETIGEMKKLVEEGKIKYIGLSE 163 (252)
Q Consensus 88 ~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~----~~~~~~~~~L~~l~~~G~ir~iGvs~ 163 (252)
+||++..... ....++++++.+++++++||+||++||+|++++|..+.. ..+.|++.+|+++|++||+|+||++.
T Consensus 101 aTKvgRy~ld-~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~RfiGitg 179 (342)
T KOG1576|consen 101 ATKVGRYELD-YANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRFIGITG 179 (342)
T ss_pred eeeeeecccC-ccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeEeeecc
Confidence 9999975532 234578999999999999999999999999999998764 23678999999999999999999999
Q ss_pred CCHHHHHHHhhc--CCceEEe--eecCccccchhhhHHHHHHHhCCeEEecccCccccCCCCCCCCCCCCCcccccc
Q 025500 164 ASPGTIRRAHAV--HPITAVQ--MEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLVLF 236 (252)
Q Consensus 164 ~~~~~l~~~~~~--~~~~~~q--~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~ 236 (252)
++.+.+.++++. +.++++- ..|++.+.. .-..+++.+.+|++|+.-++++.|+|+++-.+.+.|+.+-++..
T Consensus 180 ypldvl~~~ae~~~G~~dvvlsY~ry~l~d~t-Ll~~~~~~~sk~vgVi~AsalsmgLLt~~gp~~wHPaS~Elk~~ 255 (342)
T KOG1576|consen 180 YPLDVLTECAERGKGRLDVVLSYCRYTLNDNT-LLRYLKRLKSKGVGVINASALSMGLLTNQGPPPWHPASDELKEA 255 (342)
T ss_pred cchHHHHHHHhcCCCceeeehhhhhhccccHH-HHHHHHHHHhcCceEEehhhHHHHHhhcCCCCCCCCCCHHHHHH
Confidence 999999999876 3456555 455555443 25677888999999999999999999999888899887666543
No 17
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=1.8e-41 Score=290.83 Aligned_cols=231 Identities=27% Similarity=0.364 Sum_probs=198.7
Q ss_pred cCceecCCCCccccceeecccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhcCCCCCEEE
Q 025500 8 VPRVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQV 87 (252)
Q Consensus 8 m~~~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~~~R~~~~i 87 (252)
|.||++|+||.++|.+|||||++...+....|.+.+.+++++|++.|||+||||..|..|.||..+|++|....|++|.+
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~L 80 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKL 80 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceEEE
Confidence 78999999999999999999999876655568999999999999999999999999987889999999999988999999
Q ss_pred EeccCccCCCCcccccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHH-----HHHHHHHHHHHcCCccEEEcc
Q 025500 88 ATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIE-----ETIGEMKKLVEEGKIKYIGLS 162 (252)
Q Consensus 88 ~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~-----~~~~~L~~l~~~G~ir~iGvs 162 (252)
+||+..... -+++.+++-++++|++|++||+|+|+||..+. ..++ +.++.+++++++|+||++|+|
T Consensus 81 aTKlp~~~~--------~~~edm~r~fneqLekl~~Dy~D~yliH~l~~-e~~~k~~~~g~~df~~kak~eGkIr~~GFS 151 (391)
T COG1453 81 ATKLPSWPV--------KDREDMERIFNEQLEKLGTDYIDYYLIHGLNT-ETWEKIERLGVFDFLEKAKAEGKIRNAGFS 151 (391)
T ss_pred EeecCCccc--------cCHHHHHHHHHHHHHHhCCchhhhhhhccccH-HHHHHHHccChHHHHHHHHhcCcEEEeeec
Confidence 999986442 36899999999999999999999999999976 3322 368999999999999999999
Q ss_pred CCCH-HHHHHHhhcCCceEEeeecCccccchh--hhHHHHHHHhCCeEEecccCccccCCCCCC----------CCCCCC
Q 025500 163 EASP-GTIRRAHAVHPITAVQMEWSLWTRDIE--EEIIPLCRELGIGIVPYSPLGRGFFGGKAV----------VENVPA 229 (252)
Q Consensus 163 ~~~~-~~l~~~~~~~~~~~~q~~~~~~~~~~~--~~l~~~~~~~gi~v~a~spl~~G~L~~~~~----------~~~~~~ 229 (252)
.|+. +.+++++...+++++|++||.++.... .+.+++|+++|++|+.++|+.+|-|..+.. ...-.|
T Consensus 152 fHgs~e~~~~iv~a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~vP~~~~~l~~~~~~~~sP 231 (391)
T COG1453 152 FHGSTEVFKEIVDAYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYNVPEKLEELCRPASPKRSP 231 (391)
T ss_pred CCCCHHHHHHHHhcCCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccCCCHHHHHHHHhcCCCCCc
Confidence 9875 679999999999999999999998744 489999999999999999999998887421 111113
Q ss_pred CccccccCCccccccCccccc
Q 025500 230 DSFLVLFSVNVYPHHFVSSVS 250 (252)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~ 250 (252)
.+|.. +++.++|.|++|+
T Consensus 232 ~~wa~---R~~~shp~V~~vl 249 (391)
T COG1453 232 AEWAL---RYLLSHPEVTTVL 249 (391)
T ss_pred HHHHH---HHHhcCCCeEEEe
Confidence 34433 3458888888775
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.13 E-value=7e-06 Score=67.79 Aligned_cols=78 Identities=15% Similarity=0.195 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhc--CCceEEeeecCccccchhhhHHHHHHHhCCeEEecccCcccc
Q 025500 140 IEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV--HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGF 217 (252)
Q Consensus 140 ~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~ 217 (252)
+.+.|..||+++..|+|..||+|.|+..+|++++.. ..|..+|+++.-...- .+++.+||.++.|.+...+=-. -+
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvv-PpdLqafa~~hdiQLltHsDP~-~l 232 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVV-PPDLQAFADRHDIQLLTHSDPS-AL 232 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccC-CHHHHHHhhhcceeeeecCCch-hc
Confidence 457899999999999999999999999999999887 4578888876655543 2799999999999999876433 34
Q ss_pred CC
Q 025500 218 FG 219 (252)
Q Consensus 218 L~ 219 (252)
|+
T Consensus 233 ls 234 (285)
T KOG3023|consen 233 LS 234 (285)
T ss_pred CC
Confidence 44
No 19
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=96.13 E-value=0.27 Score=43.17 Aligned_cols=156 Identities=11% Similarity=0.059 Sum_probs=99.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhc-CCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ-LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEAS 117 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~-~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 117 (252)
+.++..+.++.+.+.|++.|..--.-......+.+ +++++ .+ ++-|.-+.... ++.+.. ..+-+.
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~g~~~~~d~~~v-~~lr~~~g--~~~l~vD~n~~----------~~~~~A-~~~~~~ 199 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKLGGDLEDDIERI-RAIREAAP--DARLRVDANQG----------WTPEEA-VELLRE 199 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeCCChhhHHHHH-HHHHHhCC--CCeEEEeCCCC----------cCHHHH-HHHHHH
Confidence 56778888899999999999974311111122333 34444 33 56666666432 334332 233344
Q ss_pred HHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCcc-EEEccCCCHHHHHHHhhcCCceEEeeecCccccch-hhh
Q 025500 118 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDI-EEE 195 (252)
Q Consensus 118 L~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~-~~~ 195 (252)
|+..+ +.++..|-.. +-++.+.++++.-.+. ..|=+-++.+.+.++++....+++|+..+..-.-. -..
T Consensus 200 l~~~~-----l~~iEeP~~~----~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~ 270 (316)
T cd03319 200 LAELG-----VELIEQPVPA----GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEALR 270 (316)
T ss_pred HHhcC-----CCEEECCCCC----CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHH
Confidence 55554 4444555432 2367778888887766 33445578899999998888999999877653221 278
Q ss_pred HHHHHHHhCCeEEecccCcccc
Q 025500 196 IIPLCRELGIGIVPYSPLGRGF 217 (252)
Q Consensus 196 l~~~~~~~gi~v~a~spl~~G~ 217 (252)
+...|+++|+.++..+-+..++
T Consensus 271 ~~~~a~~~gi~~~~~~~~~~~i 292 (316)
T cd03319 271 IADLARAAGLKVMVGCMVESSL 292 (316)
T ss_pred HHHHHHHcCCCEEEECchhhHH
Confidence 9999999999999876665443
No 20
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=93.91 E-value=2.8 Score=37.28 Aligned_cols=154 Identities=12% Similarity=0.093 Sum_probs=93.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCC-----CcHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQ-----NANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSC 113 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~-----g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~ 113 (252)
+.++..+..+.+.+.|++.|-.--..+. -..+..+=+++++.-..++.|...... .++.+...
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~~~~l~vDaN~----------~~~~~~a~-- 206 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGPDVDLMVDANG----------RWDLAEAI-- 206 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCCCCEEEEECCC----------CCCHHHHH--
Confidence 4677788888889999998875432221 011222223444422234555544421 13444433
Q ss_pred HHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCcc-EEEccCCCHHHHHHHhhcCCceEEeeecCccccch
Q 025500 114 CEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDI 192 (252)
Q Consensus 114 ~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~ 192 (252)
+.+++|. ..++.+++.|-.. +.++.+.+++++-.+. ..|=+-++++.+.++++...++++|+.....-.-.
T Consensus 207 --~~~~~l~--~~~i~~iEqP~~~----~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~ 278 (357)
T cd03316 207 --RLARALE--EYDLFWFEEPVPP----DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGIT 278 (357)
T ss_pred --HHHHHhC--ccCCCeEcCCCCc----cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCHH
Confidence 3333332 2345566666442 2467778888875555 33444578899999998888999999876654221
Q ss_pred -hhhHHHHHHHhCCeEEeccc
Q 025500 193 -EEEIIPLCRELGIGIVPYSP 212 (252)
Q Consensus 193 -~~~l~~~~~~~gi~v~a~sp 212 (252)
-..+.+.|+++|+.++..+.
T Consensus 279 ~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 279 EAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred HHHHHHHHHHHcCCeEeccCC
Confidence 27899999999999887764
No 21
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=93.63 E-value=4 Score=34.71 Aligned_cols=158 Identities=15% Similarity=0.148 Sum_probs=96.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASL 118 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 118 (252)
+.++..+.++.+.+.|++.|-.--.-.. ..+...=+++++.-.+++.|...... .++.+...+-+ +.|
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg~~~-~~d~~~v~~vr~~~g~~~~l~vDan~----------~~~~~~a~~~~-~~l 152 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVGRDP-ARDVAVVAALREAVGDDAELRVDANR----------GWTPKQAIRAL-RAL 152 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCH-HHHHHHHHHHHHhcCCCCEEEEeCCC----------CcCHHHHHHHH-HHH
Confidence 4577778888899999998875421111 11222224445422334444333321 13444433322 344
Q ss_pred HHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCcc-EEEccCCCHHHHHHHhhcCCceEEeeecCccccch-hhhH
Q 025500 119 KRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDI-EEEI 196 (252)
Q Consensus 119 ~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~-~~~l 196 (252)
+.++ +.+++.|-.. +.++.+.++++.-.+. ..|=+-++...+.++++...++++|+..+..-.-. ...+
T Consensus 153 ~~~~-----i~~iEeP~~~----~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~ 223 (265)
T cd03315 153 EDLG-----LDYVEQPLPA----DDLEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRV 223 (265)
T ss_pred HhcC-----CCEEECCCCc----ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHHH
Confidence 4444 4445666432 2356677777776555 34445578888999888888999999887755322 2789
Q ss_pred HHHHHHhCCeEEecccCcccc
Q 025500 197 IPLCRELGIGIVPYSPLGRGF 217 (252)
Q Consensus 197 ~~~~~~~gi~v~a~spl~~G~ 217 (252)
.+.|+++|+.++..+.+..|+
T Consensus 224 ~~~A~~~gi~~~~~~~~~s~i 244 (265)
T cd03315 224 LAVAEALGLPVMVGSMIESGL 244 (265)
T ss_pred HHHHHHcCCcEEecCccchHH
Confidence 999999999999887666553
No 22
>PRK08392 hypothetical protein; Provisional
Probab=92.43 E-value=4.2 Score=33.56 Aligned_cols=149 Identities=17% Similarity=0.140 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHCCCCEEeCcCCcCCC---cHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHH
Q 025500 41 EDGISMIKHAFSKGITFFDTADVYGQN---ANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEAS 117 (252)
Q Consensus 41 ~~~~~~l~~A~~~Gin~~Dta~~Yg~g---~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 117 (252)
....+.++.|.+.|++.|=.+++.... .-+..+.+..+-..+.++.| ..|... +..++. .+..++.
T Consensus 14 ~~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~~~~~i~i--l~GiE~--------~~~~~~-~~~~~~~ 82 (215)
T PRK08392 14 GSVRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWGEESEIVV--LAGIEA--------NITPNG-VDITDDF 82 (215)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHhhccCceE--EEeEEe--------eecCCc-chhHHHH
Confidence 346889999999999998777665311 11222221111011223333 222211 000111 1233344
Q ss_pred HHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCC-------C-HHHHHHHh----hcC-CceEEeee
Q 025500 118 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-------S-PGTIRRAH----AVH-PITAVQME 184 (252)
Q Consensus 118 L~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~-------~-~~~l~~~~----~~~-~~~~~q~~ 184 (252)
+++ .|++ +..+|........++..+.+.++.+.+.+.-+|=-+. . .+.+++++ +.. .+.+|-
T Consensus 83 ~~~--~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiNt-- 157 (215)
T PRK08392 83 AKK--LDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEISS-- 157 (215)
T ss_pred Hhh--CCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEeC--
Confidence 443 4555 6677854333335567788888888888777764321 1 12333322 222 233332
Q ss_pred cCccccchhhhHHHHHHHhCCeEE
Q 025500 185 WSLWTRDIEEEIIPLCRELGIGIV 208 (252)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~~gi~v~ 208 (252)
..+.+...+++.|++.|+.++
T Consensus 158 ---~~~~p~~~~l~~~~~~G~~~~ 178 (215)
T PRK08392 158 ---RYRVPDLEFIRECIKRGIKLT 178 (215)
T ss_pred ---CCCCCCHHHHHHHHHcCCEEE
Confidence 112223578888888887655
No 23
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=91.81 E-value=7.4 Score=34.23 Aligned_cols=132 Identities=11% Similarity=0.009 Sum_probs=85.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEeC---cC-----CcCCC----cHHHHHHHHHhcC---CCCCEEEEeccCccCCCCccccc
Q 025500 39 SEEDGISMIKHAFSKGITFFDT---AD-----VYGQN----ANEVLLGKALKQL---PREKIQVATKFGIAGIGVAGVIV 103 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dt---a~-----~Yg~g----~se~~ig~~l~~~---~R~~~~i~tK~~~~~~~~~~~~~ 103 (252)
++++..++...+.+.|+..||- ++ .||.| ..-+.+.+.++.+ -..++-|+.|+...+.
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~------- 145 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWD------- 145 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCC-------
Confidence 6788888888889999999993 33 25544 2334455555442 1225788889765321
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHH---HHHHHHHHHHcCCccEEEccC-CCHHHHHHHhhcCCce
Q 025500 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEE---TIGEMKKLVEEGKIKYIGLSE-ASPGTIRRAHAVHPIT 179 (252)
Q Consensus 104 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~---~~~~L~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~ 179 (252)
+.+. ...+-+.++..|+ |.+.+|.......... -|+...++++.-.|.-||..+ .++++.+++++....+
T Consensus 146 --~~~~-~~~~a~~l~~~Gv---d~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~D 219 (312)
T PRK10550 146 --SGER-KFEIADAVQQAGA---TELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCD 219 (312)
T ss_pred --CchH-HHHHHHHHHhcCC---CEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCC
Confidence 1122 2356666777775 6777887544322211 378888888887899999888 5788888888665566
Q ss_pred EEee
Q 025500 180 AVQM 183 (252)
Q Consensus 180 ~~q~ 183 (252)
.+++
T Consensus 220 gVmi 223 (312)
T PRK10550 220 AVMI 223 (312)
T ss_pred EEEE
Confidence 6655
No 24
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=91.81 E-value=2.5 Score=34.55 Aligned_cols=145 Identities=12% Similarity=0.033 Sum_probs=89.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhc----CCCCCEEEEeccCccCCCCcccccCCChHHHHHHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ----LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~----~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 114 (252)
|.+++.++++.|++.|++..| .| ++.+..+++. ..++++++.-=. ...+.+++.+
T Consensus 10 d~~~~~~~v~~~l~~g~~~~~---i~-----~~~l~p~m~~iG~~w~~gei~va~~~-------------~a~~~~~~~l 68 (197)
T TIGR02370 10 EEDDVVEGAQKALDAGIDPIE---LI-----EKGLMAGMGVVGKLFEDGELFLPHVM-------------MSADAMLAGI 68 (197)
T ss_pred CHHHHHHHHHHHHHcCCCHHH---HH-----HHHHHHHHHHHHHHHcCCCccHHHHH-------------HHHHHHHHHH
Confidence 789999999999999987666 22 3444455543 345555552111 2344555566
Q ss_pred HHHHHHcCCC----cccEEEccCCCCCCCHHHHHHHHHHHHHcCC-ccEEEccCCCHHHHHHHhhcCCceEEeeecCccc
Q 025500 115 EASLKRLDVD----YIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWT 189 (252)
Q Consensus 115 ~~sL~~Lg~d----~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~ 189 (252)
+.....+... .---+++-.+..+.+--...-.-.-++..|. |.++|. +.+.+.+.+......++++.+.++...
T Consensus 69 ~~l~~~~~~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~-~vp~e~~v~~~~~~~pd~v~lS~~~~~ 147 (197)
T TIGR02370 69 KVLTPEMEKAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGR-DVPIDTVVEKVKKEKPLMLTGSALMTT 147 (197)
T ss_pred HHHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCC-CCCHHHHHHHHHHcCCCEEEEcccccc
Confidence 5555555421 1112333334333333333333445667787 778885 556677777777788999999887666
Q ss_pred cchh-hhHHHHHHHhCC
Q 025500 190 RDIE-EEIIPLCRELGI 205 (252)
Q Consensus 190 ~~~~-~~l~~~~~~~gi 205 (252)
+... .++++.+++.|.
T Consensus 148 ~~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 148 TMYGQKDINDKLKEEGY 164 (197)
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 5433 789999999864
No 25
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=91.50 E-value=1.9 Score=36.49 Aligned_cols=105 Identities=16% Similarity=0.125 Sum_probs=69.8
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcC-CccEEEccCCCHHHHHHHhhcCCceEEee
Q 025500 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSEASPGTIRRAHAVHPITAVQM 183 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G-~ir~iGvs~~~~~~l~~~~~~~~~~~~q~ 183 (252)
++.+...+ +-+.|..+|+++|++-....+......++.++.++.+++.+ .++...++....+.++.+.+.. ++.+++
T Consensus 16 ~s~e~~~~-i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g-~~~i~i 93 (265)
T cd03174 16 FSTEDKLE-IAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG-VDEVRI 93 (265)
T ss_pred CCHHHHHH-HHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC-cCEEEE
Confidence 45555554 44458889999999887765533222346788889999988 5777677766666777776643 566666
Q ss_pred ecCccc--------c------chhhhHHHHHHHhCCeEEecc
Q 025500 184 EWSLWT--------R------DIEEEIIPLCRELGIGIVPYS 211 (252)
Q Consensus 184 ~~~~~~--------~------~~~~~l~~~~~~~gi~v~a~s 211 (252)
.+...+ + ..-...+++++++|+.+..+-
T Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 94 FDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 655441 1 112677888999998877655
No 26
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=91.39 E-value=7.4 Score=33.92 Aligned_cols=182 Identities=15% Similarity=0.134 Sum_probs=87.8
Q ss_pred ceeecccccCCCCC-CCCCHHHHHHHHHHHHHC-CCCEEeCcCCcCCCc---HHHHHHHHHhcC--CCCCEEEEeccCcc
Q 025500 22 KLGYGCMNLSGGYS-SPVSEEDGISMIKHAFSK-GITFFDTADVYGQNA---NEVLLGKALKQL--PREKIQVATKFGIA 94 (252)
Q Consensus 22 ~lglG~~~~g~~~~-~~~~~~~~~~~l~~A~~~-Gin~~Dta~~Yg~g~---se~~ig~~l~~~--~R~~~~i~tK~~~~ 94 (252)
.|.||.+.-.. +. ...+.+...+.+...++. |++.||----|+.-. +-..+-++|+.+ .+..+.|+.-+...
T Consensus 71 iiS~GG~~g~~-~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~~p~l~vs~Tlp~~ 149 (294)
T cd06543 71 IVSFGGASGTP-LATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKEYPDLKISFTLPVL 149 (294)
T ss_pred EEEecCCCCCc-cccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 46788776332 11 112445554555555554 999999755554211 124455566542 22356666555433
Q ss_pred CCCCcccccCCChHHHHHHHHHHHHHcCC--CcccEEEccCCCC--CCC-HHHHHHHHHHHHHcCCccEEEccCCCHHHH
Q 025500 95 GIGVAGVIVKGAPDYVRSCCEASLKRLDV--DYIDLYYQHRVDT--SVP-IEETIGEMKKLVEEGKIKYIGLSEASPGTI 169 (252)
Q Consensus 95 ~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~--d~iDl~~lh~~~~--~~~-~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l 169 (252)
+. .++++.+ .+-+..+..|+ |++-++-+..-.. ..+ -+.+..+.+.++.+=+--+=+ ++.+++
T Consensus 150 p~-------gl~~~g~--~~l~~a~~~Gv~~d~VNiMtmDyg~~~~~~~mg~~a~~aa~~~~~ql~~~~~~---~s~~~~ 217 (294)
T cd06543 150 PT-------GLTPDGL--NVLEAAAANGVDLDTVNIMTMDYGSSAGSQDMGAAAISAAESLHDQLKDLYPK---LSDAEL 217 (294)
T ss_pred CC-------CCChhHH--HHHHHHHHcCCCcceeeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHHccC---CCHHHH
Confidence 21 1233322 34455566665 4444444433322 122 234555555555442111111 222232
Q ss_pred HHHhhcCCceEEeeec--CccccchhhhHHHHHHHhCCeEEecccCcccc
Q 025500 170 RRAHAVHPITAVQMEW--SLWTRDIEEEIIPLCRELGIGIVPYSPLGRGF 217 (252)
Q Consensus 170 ~~~~~~~~~~~~q~~~--~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~ 217 (252)
-..+...|. +-+.+. ..+.......+.++|+++||+-++|-.+.+..
T Consensus 218 ~~~ig~TpM-iG~nD~~~e~ft~~da~~~~~fA~~~~l~~~s~Ws~~RD~ 266 (294)
T cd06543 218 WAMIGVTPM-IGVNDVGSEVFTLADAQTLVDFAKEKGLGRLSMWSLNRDR 266 (294)
T ss_pred HHHcccccc-ccccCCCCceeeHHHHHHHHHHHHhCCCCeEeeeeccCCC
Confidence 222332221 111111 02222223789999999999999999887554
No 27
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=90.85 E-value=1.2 Score=36.18 Aligned_cols=102 Identities=14% Similarity=0.147 Sum_probs=71.2
Q ss_pred HHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhh-cC-CceEEeeecCccccc
Q 025500 114 CEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHA-VH-PITAVQMEWSLWTRD 191 (252)
Q Consensus 114 ~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~-~~-~~~~~q~~~~~~~~~ 191 (252)
+++.|..+.-+.+|.+.+..- -+.+..-.+.|+++..-|+---|++.||.-+.....+- .+ -|..-+++|+.++.+
T Consensus 64 ld~gL~~f~d~sFD~VIlsqt--LQ~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTP 141 (193)
T PF07021_consen 64 LDEGLADFPDQSFDYVILSQT--LQAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTP 141 (193)
T ss_pred HHHhHhhCCCCCccEEehHhH--HHhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCC
Confidence 444555555566666666432 11223345568888888998889999998876555433 23 355677888888865
Q ss_pred h-----hhhHHHHHHHhCCeEEecccCcccc
Q 025500 192 I-----EEEIIPLCRELGIGIVPYSPLGRGF 217 (252)
Q Consensus 192 ~-----~~~l~~~~~~~gi~v~a~spl~~G~ 217 (252)
. -.+.-++|++.|+.|.-..++.++.
T Consensus 142 Nih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 142 NIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred CcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 2 2889999999999999999998776
No 28
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=90.44 E-value=6.9 Score=31.93 Aligned_cols=145 Identities=18% Similarity=0.145 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhc----CCCCCEEEEeccCccCCCCcccccCCChHHHHHHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ----LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~----~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 114 (252)
|++.+.+++..+++.|+...| .| +..+..+++. ..++++++.-=. ...+.+++.+
T Consensus 9 D~~~~~~~v~~~l~~g~~~~~---i~-----~~~l~p~m~~vG~~w~~~~i~va~e~-------------~as~~~~~~l 67 (201)
T cd02070 9 DEEETVELVKKALEAGIDPQD---II-----EEGLAPGMDIVGDKYEEGEIFVPELL-------------MAADAMKAGL 67 (201)
T ss_pred CHHHHHHHHHHHHHcCCCHHH---HH-----HHHHHHHHHHHHHHHccCCeeHHHHH-------------HHHHHHHHHH
Confidence 789999999999999986554 22 2344444443 345556553221 2234455555
Q ss_pred HHHHHHcCCCc---ccEEEccCCCCCCCHHHHHHHHHHHHHcCC-ccEEEccCCCHHHHHHHhhcCCceEEeeecCcccc
Q 025500 115 EASLKRLDVDY---IDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTR 190 (252)
Q Consensus 115 ~~sL~~Lg~d~---iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~ 190 (252)
......+.... ---+++-.+..+.+.-...=.-.-++..|. |.++| .+.+.+.+.+......++++-+.++...+
T Consensus 68 ~~l~~~~~~~~~~~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG-~~~p~~~l~~~~~~~~~d~v~lS~~~~~~ 146 (201)
T cd02070 68 DLLKPLLGKSKSAKKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLG-RDVPPEEFVEAVKEHKPDILGLSALMTTT 146 (201)
T ss_pred HHHHHHHhhcCCCCCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEecccccc
Confidence 55544443322 113344444433333333333345667887 67788 56677888888777888898888866554
Q ss_pred chh-hhHHHHHHHhCC
Q 025500 191 DIE-EEIIPLCRELGI 205 (252)
Q Consensus 191 ~~~-~~l~~~~~~~gi 205 (252)
-.. ..+++.+++.+.
T Consensus 147 ~~~~~~~i~~lr~~~~ 162 (201)
T cd02070 147 MGGMKEVIEALKEAGL 162 (201)
T ss_pred HHHHHHHHHHHHHCCC
Confidence 322 778888888854
No 29
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=90.15 E-value=13 Score=32.84 Aligned_cols=153 Identities=14% Similarity=0.094 Sum_probs=95.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhc-CCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ-LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEAS 117 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~-~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 117 (252)
++++..+.+..+.+.|++.|=.-- +. ..+.-.=+++++ .+ ++.|..-.. ..++++... . -+.
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~KiKv--~~-~~d~~~v~~vr~~~~--~~~l~vDaN----------~~~~~~~a~-~-~~~ 194 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIKLKI--TP-QIMHQLVKLRRLRFP--QIPLVIDAN----------ESYDLQDFP-R-LKE 194 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEe--CC-chhHHHHHHHHHhCC--CCcEEEECC----------CCCCHHHHH-H-HHH
Confidence 456777888888899999874321 11 122233345554 32 332222211 123454431 1 233
Q ss_pred HHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCcc-EEEccCCCHHHHHHHhhcCCceEEeeecCccccch-hhh
Q 025500 118 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDI-EEE 195 (252)
Q Consensus 118 L~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~-~~~ 195 (252)
|+. .++.++..|-.. +.++.+.+++++-.+. ..|=|.++...+.++++....+++|++.+..-.-. -..
T Consensus 195 l~~-----~~~~~iEeP~~~----~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~ 265 (324)
T TIGR01928 195 LDR-----YQLLYIEEPFKI----DDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQK 265 (324)
T ss_pred Hhh-----CCCcEEECCCCh----hHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHH
Confidence 433 456666666432 3467788888875554 55777789999999998888999999877644321 278
Q ss_pred HHHHHHHhCCeEEecccCcccc
Q 025500 196 IIPLCRELGIGIVPYSPLGRGF 217 (252)
Q Consensus 196 l~~~~~~~gi~v~a~spl~~G~ 217 (252)
+.+.|+++|+.++..+.+..|+
T Consensus 266 ~~~~A~~~gi~~~~~~~~es~i 287 (324)
T TIGR01928 266 AIETCREHGAKVWIGGMLETGI 287 (324)
T ss_pred HHHHHHHcCCeEEEcceEcccH
Confidence 9999999999999877666663
No 30
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=89.52 E-value=3.4 Score=34.36 Aligned_cols=88 Identities=13% Similarity=0.058 Sum_probs=63.1
Q ss_pred ccEEEccCCCCCCCHHHHHHHHHHHHHcCCcc-EEEccCCCHHHHHHHhhcCCceEEeeecCccccchh-hhHHHHHHHh
Q 025500 126 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIE-EEIIPLCREL 203 (252)
Q Consensus 126 iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~-~~l~~~~~~~ 203 (252)
.++.++..|-... .++.+.+|++...+. ..+=|-++.+.+.++++...++++|+..+..-.-.+ ..+.+.|+++
T Consensus 120 ~~i~~iEeP~~~~----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~ 195 (229)
T cd00308 120 YGLAWIEEPCAPD----DLEGYAALRRRTGIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAF 195 (229)
T ss_pred cCCCeEECCCCcc----CHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 5667777775432 356677788777665 334445677888788777789999998877543222 6889999999
Q ss_pred CCeEEecccCcccc
Q 025500 204 GIGIVPYSPLGRGF 217 (252)
Q Consensus 204 gi~v~a~spl~~G~ 217 (252)
|+.++..+.+..|.
T Consensus 196 gi~~~~~~~~~s~i 209 (229)
T cd00308 196 GIRVMVHGTLESSI 209 (229)
T ss_pred CCEEeecCCCCCHH
Confidence 99999988776553
No 31
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=89.39 E-value=14 Score=32.95 Aligned_cols=156 Identities=9% Similarity=0.048 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHCC-CCEEeCcCC-cCCCcHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHH
Q 025500 40 EEDGISMIKHAFSKG-ITFFDTADV-YGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEAS 117 (252)
Q Consensus 40 ~~~~~~~l~~A~~~G-in~~Dta~~-Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 117 (252)
.++..+....+++.| ++.|=.--. -......+.+ +++++.-.+++.|..=... .++.+... .+-+.
T Consensus 143 ~~~~~~~~~~~~~~G~f~~~KiKvg~~~~~~d~~~v-~avr~~~g~~~~l~iDaN~----------~~~~~~A~-~~~~~ 210 (365)
T cd03318 143 TERDIAEAEEMLEAGRHRRFKLKMGARPPADDLAHV-EAIAKALGDRASVRVDVNQ----------AWDESTAI-RALPR 210 (365)
T ss_pred HHHHHHHHHHHHhCCCceEEEEEeCCCChHHHHHHH-HHHHHHcCCCcEEEEECCC----------CCCHHHHH-HHHHH
Confidence 445556667778889 887764311 0100122333 4444422233333322211 13444322 22234
Q ss_pred HHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCcc-EEEccCCCHHHHHHHhhcCCceEEeeecCccccch-hhh
Q 025500 118 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDI-EEE 195 (252)
Q Consensus 118 L~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~-~~~ 195 (252)
|+.+ ++.++..|-.. +.++.+.+|+++..+. ++|=+-++...+.++++...++++|++....-.-. -..
T Consensus 211 l~~~-----~~~~iEeP~~~----~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~ 281 (365)
T cd03318 211 LEAA-----GVELIEQPVPR----ENLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQK 281 (365)
T ss_pred HHhc-----CcceeeCCCCc----ccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHH
Confidence 4444 45566666432 2467788888876655 55666678889999988888899999876654321 278
Q ss_pred HHHHHHHhCCeEEecccCccc
Q 025500 196 IIPLCRELGIGIVPYSPLGRG 216 (252)
Q Consensus 196 l~~~~~~~gi~v~a~spl~~G 216 (252)
+...|+++|+.++..+-+..|
T Consensus 282 ~~~~a~~~gi~~~~~~~~~s~ 302 (365)
T cd03318 282 VAAIAEAAGIALYGGTMLESS 302 (365)
T ss_pred HHHHHHHcCCceeecCcchhH
Confidence 999999999999865444333
No 32
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=88.49 E-value=19 Score=32.72 Aligned_cols=151 Identities=13% Similarity=0.100 Sum_probs=93.0
Q ss_pred CHHHHHHHHHHHHH-CCCCEEeCcCCcCCCcHHHHHHHHHhc-CCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHH
Q 025500 39 SEEDGISMIKHAFS-KGITFFDTADVYGQNANEVLLGKALKQ-LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEA 116 (252)
Q Consensus 39 ~~~~~~~~l~~A~~-~Gin~~Dta~~Yg~g~se~~ig~~l~~-~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (252)
+.++..+..+.+.+ .|++.|=.--.-.+...+...=+++++ ++ ++.|..-... .++++... +
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~~~~~~di~~v~avRea~~--~~~l~vDaN~----------~w~~~~A~----~ 231 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGVLPGEEEIEAVKALAEAFP--GARLRLDPNG----------AWSLETAI----R 231 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCCCCHHHHHHHHHHHHHhCC--CCcEEEeCCC----------CcCHHHHH----H
Confidence 55667777777775 599987543211110112222234444 42 3333333211 23444333 3
Q ss_pred HHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCcc-EEEccCCCHHHHHHHhhcCCceEEeeecCccccch-hh
Q 025500 117 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDI-EE 194 (252)
Q Consensus 117 sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~-~~ 194 (252)
.+++|. . ++.++..|-. .++.+.+|+++..+. +.|=|-++..++.++++...++++|...+..-.-. -.
T Consensus 232 ~~~~l~--~-~l~~iEeP~~------d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~ 302 (395)
T cd03323 232 LAKELE--G-VLAYLEDPCG------GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSV 302 (395)
T ss_pred HHHhcC--c-CCCEEECCCC------CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHHH
Confidence 444453 2 6667777653 377788888886655 55666678888999988888999999887654321 27
Q ss_pred hHHHHHHHhCCeEEecccCc
Q 025500 195 EIIPLCRELGIGIVPYSPLG 214 (252)
Q Consensus 195 ~l~~~~~~~gi~v~a~spl~ 214 (252)
.+.+.|+++|+.+...+...
T Consensus 303 kia~~A~~~gi~~~~h~~~e 322 (395)
T cd03323 303 RVAQVCETWGLGWGMHSNNH 322 (395)
T ss_pred HHHHHHHHcCCeEEEecCcc
Confidence 89999999999999887653
No 33
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=88.46 E-value=18 Score=32.38 Aligned_cols=147 Identities=10% Similarity=0.045 Sum_probs=93.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASL 118 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 118 (252)
+.++..+.+..+.+.|++.|=.-- .+.+ +++++.-.+++.+..-.. ..++.+... +.+
T Consensus 126 ~~~~~~~~a~~~~~~Gf~~~KiKv-------~~~v-~avre~~G~~~~l~vDaN----------~~w~~~~A~----~~~ 183 (361)
T cd03322 126 DIPELLEAVERHLAQGYRAIRVQL-------PKLF-EAVREKFGFEFHLLHDVH----------HRLTPNQAA----RFG 183 (361)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeCH-------HHHH-HHHHhccCCCceEEEECC----------CCCCHHHHH----HHH
Confidence 456677777888889999765321 2233 344442223444433221 124454332 333
Q ss_pred HHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCcc-EEEccCCCHHHHHHHhhcCCceEEeeecCccccch-hhhH
Q 025500 119 KRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDI-EEEI 196 (252)
Q Consensus 119 ~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~-~~~l 196 (252)
+.|. .+++.++..|-.. +-++.+.+|+++..+. ..|=|-++...+.++++...++++|+.....-.-. -..+
T Consensus 184 ~~l~--~~~l~~iEeP~~~----~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~i 257 (361)
T cd03322 184 KDVE--PYRLFWMEDPTPA----ENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKI 257 (361)
T ss_pred HHhh--hcCCCEEECCCCc----ccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHH
Confidence 3332 3467777777543 2377788888887665 66777788999999998888999999877644221 2789
Q ss_pred HHHHHHhCCeEEecccC
Q 025500 197 IPLCRELGIGIVPYSPL 213 (252)
Q Consensus 197 ~~~~~~~gi~v~a~spl 213 (252)
.+.|+++|+.++..+..
T Consensus 258 a~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 258 ADLASLYGVRTGWHGPT 274 (361)
T ss_pred HHHHHHcCCeeeccCCC
Confidence 99999999999876543
No 34
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=87.94 E-value=9.4 Score=34.95 Aligned_cols=106 Identities=10% Similarity=-0.049 Sum_probs=72.5
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHc------CCccEEEccCCCHHHHHHHhhcCCc
Q 025500 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEE------GKIKYIGLSEASPGTIRRAHAVHPI 178 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~------G~ir~iGvs~~~~~~l~~~~~~~~~ 178 (252)
++++...+-+.+. ++...+ +++ ++..|-...+.++.++.+.+|+++ ..--..+=+-++.+.+.++++....
T Consensus 245 ~~~~~ai~~l~~l-~~~~~~-~~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~ 321 (408)
T TIGR01502 245 VDIKAMADYIQTL-AEAAKP-FHL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAG 321 (408)
T ss_pred CCHHHHHHHHHHH-HHhCcc-CCe-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCC
Confidence 5665555433332 221111 345 788886554445667888888766 4444556666789999999988889
Q ss_pred eEEeeecCccccchh-hhHHHHHHHhCCeEEecccC
Q 025500 179 TAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPL 213 (252)
Q Consensus 179 ~~~q~~~~~~~~~~~-~~l~~~~~~~gi~v~a~spl 213 (252)
+++|+..+-.-.-.+ .++.++|+++||.++..+..
T Consensus 322 d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 322 HMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGTC 357 (408)
T ss_pred CEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCCC
Confidence 999998876543222 78999999999999987765
No 35
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=87.00 E-value=22 Score=31.82 Aligned_cols=156 Identities=10% Similarity=0.041 Sum_probs=90.2
Q ss_pred HHHHHHHHHHH-HCCCCEEeCcCCcCCCcHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHHHH
Q 025500 41 EDGISMIKHAF-SKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLK 119 (252)
Q Consensus 41 ~~~~~~l~~A~-~~Gin~~Dta~~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 119 (252)
++..+.+..++ +.|++.|=.--.-.+-..+...=+++++.-.+++.+.--.. ..++++...+ +-+.|+
T Consensus 143 ~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~d~~~v~~~re~~g~~~~l~~DaN----------~~~~~~~A~~-~~~~l~ 211 (368)
T TIGR02534 143 DRDIAEAEERIEEKRHRSFKLKIGARDPADDVAHVVAIAKALGDRASVRVDVN----------AAWDERTALH-YLPQLA 211 (368)
T ss_pred HHHHHHHHHHHHhcCcceEEEEeCCCCcHHHHHHHHHHHHhcCCCcEEEEECC----------CCCCHHHHHH-HHHHHH
Confidence 33344455565 47999875421100001222233455542233444332221 1244544332 223344
Q ss_pred HcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCcc-EEEccCCCHHHHHHHhhcCCceEEeeecCccccch-hhhHH
Q 025500 120 RLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDI-EEEII 197 (252)
Q Consensus 120 ~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~-~~~l~ 197 (252)
.+ ++.++..|-.. +.++.+.++++...+. ..|=+-++..++.++++....+++|+..+..-.-. -..+.
T Consensus 212 ~~-----~~~~iEeP~~~----~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~ 282 (368)
T TIGR02534 212 DA-----GVELIEQPTPA----ENREALARLTRRFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIA 282 (368)
T ss_pred hc-----ChhheECCCCc----ccHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHH
Confidence 43 55566666443 2367777888776655 66777788889999888778899999877644321 26799
Q ss_pred HHHHHhCCeEEecccCccc
Q 025500 198 PLCRELGIGIVPYSPLGRG 216 (252)
Q Consensus 198 ~~~~~~gi~v~a~spl~~G 216 (252)
..|+.+|+.++..+.+.+|
T Consensus 283 ~lA~~~gi~~~~~~~~~s~ 301 (368)
T TIGR02534 283 AIAEAAGIALYGGTMLEGP 301 (368)
T ss_pred HHHHHcCCceeeecchhhH
Confidence 9999999999876555444
No 36
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=86.51 E-value=13 Score=31.22 Aligned_cols=153 Identities=17% Similarity=0.186 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCc-CC-Cc-HHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVY-GQ-NA-NEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCE 115 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Y-g~-g~-se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (252)
+.+|+. .|++.|..+||.-+-- |. |. ....+. .+......+.-||..++-.+ ..+..+..+..
T Consensus 9 ~~~EA~----~a~~~gaDiID~K~P~~GaLGA~~~~vi~-~i~~~~~~~~pvSAtiGDlp---------~~p~~~~~aa~ 74 (235)
T PF04476_consen 9 NVEEAE----EALAGGADIIDLKNPAEGALGALFPWVIR-EIVAAVPGRKPVSATIGDLP---------MKPGTASLAAL 74 (235)
T ss_pred CHHHHH----HHHhCCCCEEEccCCCCCCCCCCCHHHHH-HHHHHcCCCCceEEEecCCC---------CCchHHHHHHH
Confidence 455554 4678899999975422 21 22 344444 33433344477888887544 34555555544
Q ss_pred HHHHHcCCCcccEEEccCCCCCCCHHHHHHH----HHHHHHcCCccEEEccCCC------HHHHHHHhhcCCceEEeee-
Q 025500 116 ASLKRLDVDYIDLYYQHRVDTSVPIEETIGE----MKKLVEEGKIKYIGLSEAS------PGTIRRAHAVHPITAVQME- 184 (252)
Q Consensus 116 ~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~----L~~l~~~G~ir~iGvs~~~------~~~l~~~~~~~~~~~~q~~- 184 (252)
..- ..|+||+-+=+....+.. ...+.|+. +.+.-.+.++-.++.+++. +-.+-++.....|+.++++
T Consensus 75 ~~a-~~GvdyvKvGl~g~~~~~-~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDT 152 (235)
T PF04476_consen 75 GAA-ATGVDYVKVGLFGCKDYD-EAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDT 152 (235)
T ss_pred HHH-hcCCCEEEEecCCCCCHH-HHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEec
Confidence 443 469999998887443322 11223322 2222234567788888874 3344444444557777774
Q ss_pred -----cCccccc---hhhhHHHHHHHhCCeE
Q 025500 185 -----WSLWTRD---IEEEIIPLCRELGIGI 207 (252)
Q Consensus 185 -----~~~~~~~---~~~~l~~~~~~~gi~v 207 (252)
-++++.- .-.++++.|+++|+.+
T Consensus 153 a~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 153 ADKDGGSLFDHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred ccCCCCchhhcCCHHHHHHHHHHHHHccchh
Confidence 2333332 2267888899999853
No 37
>PRK07945 hypothetical protein; Provisional
Probab=86.20 E-value=24 Score=31.37 Aligned_cols=108 Identities=18% Similarity=0.160 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHCCCCEEeCcCCcCC-----CcHHHHHHHHHhc---CCC--CCEEEEeccCccCCCCcccccCCChHH
Q 025500 40 EEDGISMIKHAFSKGITFFDTADVYGQ-----NANEVLLGKALKQ---LPR--EKIQVATKFGIAGIGVAGVIVKGAPDY 109 (252)
Q Consensus 40 ~~~~~~~l~~A~~~Gin~~Dta~~Yg~-----g~se~~ig~~l~~---~~R--~~~~i~tK~~~~~~~~~~~~~~~~~~~ 109 (252)
.....+++++|.+.|+..+=.++|... +.+.+.+-..+.. .++ .++.| +.|... +..++.+.+.
T Consensus 110 ~~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~I~I--l~GiE~----d~~~~g~~~~ 183 (335)
T PRK07945 110 GSPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAPFRI--LTGIEV----DILDDGSLDQ 183 (335)
T ss_pred CCCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCCceE--EEEeEe----cccCCCCcch
Confidence 345789999999999998877766421 1122222222221 111 12333 222211 0011112222
Q ss_pred HHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEc
Q 025500 110 VRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGL 161 (252)
Q Consensus 110 i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGv 161 (252)
. ++.|+. .||+ +..+|+... .+..+..+.|.++.+.+.+..||=
T Consensus 184 ~----~~~l~~--~D~v-IgSvH~~~~-~~~~~~~~~l~~ai~~~~~dvlgH 227 (335)
T PRK07945 184 E----PELLDR--LDVV-VASVHSKLR-MDAAAMTRRMLAAVANPHTDVLGH 227 (335)
T ss_pred h----HHHHHh--CCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCCeEEec
Confidence 2 333443 4665 777798643 334566788888888888888874
No 38
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=85.01 E-value=4 Score=33.65 Aligned_cols=67 Identities=15% Similarity=0.198 Sum_probs=47.2
Q ss_pred HHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEcc-CCCHHHHHHHhhcCCceEEeeec
Q 025500 117 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPGTIRRAHAVHPITAVQMEW 185 (252)
Q Consensus 117 sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~ 185 (252)
.+..+|.|++=+.+........+.+.+ ..+.+.. .+.++.+||. |.+++.+.++.+...++++|+.-
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~V~~~~a-~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLHG 83 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRHQTITQI-KKLASAV-PNHIDKVCVVVNPDLTTIEHILSNTSINTIQLHG 83 (207)
T ss_pred HHHHcCCCEEEEecCCCCcccCCHHHH-HHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEECC
Confidence 466799999999865544444444433 3333322 3568889996 78889999999888999999953
No 39
>PRK08609 hypothetical protein; Provisional
Probab=84.78 E-value=9.9 Score=36.40 Aligned_cols=148 Identities=18% Similarity=0.218 Sum_probs=78.3
Q ss_pred HHHHHHHHHHCCCCEEeCcCCcC-----CCcHHHHHHHH------Hhc-CCCCCEEEEeccCccCCCCcccccCCChHHH
Q 025500 43 GISMIKHAFSKGITFFDTADVYG-----QNANEVLLGKA------LKQ-LPREKIQVATKFGIAGIGVAGVIVKGAPDYV 110 (252)
Q Consensus 43 ~~~~l~~A~~~Gin~~Dta~~Yg-----~g~se~~ig~~------l~~-~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i 110 (252)
..++++.|.+.|+..|=.++|+. .|.+...+-.. +++ ...=+|+...-+.... +..
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i~~------------~g~ 418 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYPEIDILSGIEMDILP------------DGS 418 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeecC------------Ccc
Confidence 55699999999999998888862 12223222222 221 1111233333332211 111
Q ss_pred HHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccC------CC--HHHHHHH----hhcCCc
Q 025500 111 RSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE------AS--PGTIRRA----HAVHPI 178 (252)
Q Consensus 111 ~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~------~~--~~~l~~~----~~~~~~ 178 (252)
.+-.+..|+. .||+ +.-+|++. ..+.+++++.+.++.+.|.+.-||=-. .. ...++++ .+.+
T Consensus 419 ~d~~~~~L~~--~D~v-I~SvH~~~-~~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G-- 492 (570)
T PRK08609 419 LDYDDEVLAE--LDYV-IAAIHSSF-SQSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETN-- 492 (570)
T ss_pred hhhcHHHHHh--hCEE-EEEeecCC-CCCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhC--
Confidence 2222334444 4665 77778753 234567788888888888887776443 11 1122222 2222
Q ss_pred eEEeeecCccccchhhhHHHHHHHhCCeEE
Q 025500 179 TAVQMEWSLWTRDIEEEIIPLCRELGIGIV 208 (252)
Q Consensus 179 ~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~ 208 (252)
.++|++-+.+.......++..|++.|+.++
T Consensus 493 ~~lEINa~~~r~~~~~~~~~~~~e~Gv~i~ 522 (570)
T PRK08609 493 TALELNANPNRLDLSAEHLKKAQEAGVKLA 522 (570)
T ss_pred CEEEEcCCccccCccHHHHHHHHHcCCEEE
Confidence 234454444333333678888888887654
No 40
>PRK13796 GTPase YqeH; Provisional
Probab=83.78 E-value=31 Score=31.01 Aligned_cols=138 Identities=14% Similarity=0.199 Sum_probs=89.6
Q ss_pred ceeecccccCCCCCC----CCCHHHHHHHHHHHHHCC---CCEEeCcCCcCCCcHHHHHHHHHhcCCCCCEEEEeccCcc
Q 025500 22 KLGYGCMNLSGGYSS----PVSEEDGISMIKHAFSKG---ITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIA 94 (252)
Q Consensus 22 ~lglG~~~~g~~~~~----~~~~~~~~~~l~~A~~~G---in~~Dta~~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~ 94 (252)
.+|-=|.++-. |+. ..+.++..++++..-+.- +-.+|..+.-+ .-...+.+... .+.-++|.+|.-..
T Consensus 35 ~~C~RC~~l~h-y~~~~~~~~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~--s~~~~L~~~~~--~kpviLViNK~DLl 109 (365)
T PRK13796 35 VYCQRCFRLKH-YNEIQDVSLTDDDFLKLLNGIGDSDALVVNVVDIFDFNG--SWIPGLHRFVG--NNPVLLVGNKADLL 109 (365)
T ss_pred eEchhhhhhhc-cCcccCCCCCHHHHHHHHHhhcccCcEEEEEEECccCCC--chhHHHHHHhC--CCCEEEEEEchhhC
Confidence 45555554432 332 246677778888887665 44678666443 23344444443 45668899998653
Q ss_pred CCCCcccccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHH
Q 025500 95 GIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRA 172 (252)
Q Consensus 95 ~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~ 172 (252)
.. ....+.+.+-++...+.+|....|++.+.... ...++++++.+.+..+.+.+-.||.+|..-..|-..
T Consensus 110 ~~-------~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~-g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~ 179 (365)
T PRK13796 110 PK-------SVKKNKVKNWLRQEAKELGLRPVDVVLISAQK-GHGIDELLEAIEKYREGRDVYVVGVTNVGKSTLINR 179 (365)
T ss_pred CC-------ccCHHHHHHHHHHHHHhcCCCcCcEEEEECCC-CCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHH
Confidence 21 13455666666777777887656777776543 356788888888887778899999999987765444
No 41
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=83.19 E-value=8.7 Score=33.36 Aligned_cols=102 Identities=12% Similarity=0.044 Sum_probs=63.0
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhcCCceEEeee
Q 025500 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQME 184 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~ 184 (252)
++.+.. ..+-+.|.++|+++|++-.+.+|.......+.++.+..+.+...++...+. .+...++++.+.. ++.+.+-
T Consensus 23 ~s~e~k-~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~g-~~~v~i~ 99 (287)
T PRK05692 23 IPTADK-IALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAAG-ADEVAVF 99 (287)
T ss_pred cCHHHH-HHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHcC-CCEEEEE
Confidence 444444 456677999999999998666664333333456666776655456655554 4778888887752 2333332
Q ss_pred cCccc--------cc------hhhhHHHHHHHhCCeEEe
Q 025500 185 WSLWT--------RD------IEEEIIPLCRELGIGIVP 209 (252)
Q Consensus 185 ~~~~~--------~~------~~~~l~~~~~~~gi~v~a 209 (252)
++.-+ .. .-.+.+++++++|+.+.+
T Consensus 100 ~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 100 ASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 22211 11 115789999999999864
No 42
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=83.18 E-value=31 Score=30.26 Aligned_cols=150 Identities=14% Similarity=0.136 Sum_probs=81.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEeCcCCcCCC----cHHHHHHHHHhcC-CCCCEEEEeccCccCCCCcccccCCChHHHHH
Q 025500 38 VSEEDGISMIKHAFSKGITFFDTADVYGQN----ANEVLLGKALKQL-PREKIQVATKFGIAGIGVAGVIVKGAPDYVRS 112 (252)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g----~se~~ig~~l~~~-~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~ 112 (252)
.+.++..++++.+.+.|++.|.-+. |.- .-.+++.. +++. .-.++.|+|-... +.+
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~tG--GEPll~~~l~~li~~-i~~~~~~~~i~itTNG~l----------------l~~ 109 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLTG--GEPLLRKDLEDIIAA-LAALPGIRDLALTTNGYL----------------LAR 109 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC--CCCcCccCHHHHHHH-HHhcCCCceEEEEcCchh----------------HHH
Confidence 5789999999999999998877432 210 11222222 2222 1235666655321 112
Q ss_pred HHHHHHHHcCCCcccEEEccCCCC--------CCCHHHHHHHHHHHHHcCC----ccEEEccCCCHHHHHHHhhc---CC
Q 025500 113 CCEASLKRLDVDYIDLYYQHRVDT--------SVPIEETIGEMKKLVEEGK----IKYIGLSEASPGTIRRAHAV---HP 177 (252)
Q Consensus 113 ~~~~sL~~Lg~d~iDl~~lh~~~~--------~~~~~~~~~~L~~l~~~G~----ir~iGvs~~~~~~l~~~~~~---~~ 177 (252)
. -..|...|++.+- +-+|..+. ...++.++++++.+++.|. +..+.+.+.+.+.+.++.+. ..
T Consensus 110 ~-~~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~g 187 (331)
T PRK00164 110 R-AAALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRG 187 (331)
T ss_pred H-HHHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCC
Confidence 2 2334555665443 34454432 2357889999999999885 33444445555555554433 34
Q ss_pred ceEEeeecCccccc---------hhhhHHHHHHHhCCeEE
Q 025500 178 ITAVQMEWSLWTRD---------IEEEIIPLCRELGIGIV 208 (252)
Q Consensus 178 ~~~~q~~~~~~~~~---------~~~~l~~~~~~~gi~v~ 208 (252)
+.+.-++|.+.... ...++++..+++|+.+.
T Consensus 188 v~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 227 (331)
T PRK00164 188 IQLRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQ 227 (331)
T ss_pred CeEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCccc
Confidence 55555555543321 11567777777765543
No 43
>PLN02428 lipoic acid synthase
Probab=82.36 E-value=25 Score=31.51 Aligned_cols=158 Identities=13% Similarity=0.214 Sum_probs=86.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEeCc-C---CcCCCcHHHHHHHHHhcCCC--CCEEEEeccCccCCCCcccccCCChHHHH
Q 025500 38 VSEEDGISMIKHAFSKGITFFDTA-D---VYGQNANEVLLGKALKQLPR--EKIQVATKFGIAGIGVAGVIVKGAPDYVR 111 (252)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta-~---~Yg~g~se~~ig~~l~~~~R--~~~~i~tK~~~~~~~~~~~~~~~~~~~i~ 111 (252)
.+.++..++.+.+.+.|++++=.. . .|-++..+ .+.+.++.+.+ .++.|..=. + . ...+
T Consensus 130 ~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~-~~~elir~Ir~~~P~i~Ie~L~-p-d-------f~~d----- 194 (349)
T PLN02428 130 PDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSG-HFAETVRRLKQLKPEILVEALV-P-D-------FRGD----- 194 (349)
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHH-HHHHHHHHHHHhCCCcEEEEeC-c-c-------ccCC-----
Confidence 466777888888889999865432 1 23332232 33344443222 133333311 1 1 0011
Q ss_pred HHHHHHHHHcCCCcccEEEccCCCC-----------CCCHHHHHHHHHHHHHc--CCcc----EEEccCCCHHHHHHHhh
Q 025500 112 SCCEASLKRLDVDYIDLYYQHRVDT-----------SVPIEETIGEMKKLVEE--GKIK----YIGLSEASPGTIRRAHA 174 (252)
Q Consensus 112 ~~~~~sL~~Lg~d~iDl~~lh~~~~-----------~~~~~~~~~~L~~l~~~--G~ir----~iGvs~~~~~~l~~~~~ 174 (252)
+.+-+.|..-| +|. +-|+++. ....++.++.|+.+++. |..- -+|+ +-+.+++.+.+.
T Consensus 195 ~elL~~L~eAG---~d~-i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l~ 269 (349)
T PLN02428 195 LGAVETVATSG---LDV-FAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTME 269 (349)
T ss_pred HHHHHHHHHcC---CCE-EccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHHH
Confidence 22223333444 455 3366654 13457788999999988 7653 2577 566666655543
Q ss_pred c---CCceE-----------EeeecCccccchh-hhHHHHHHHhCCeEEecccCcc
Q 025500 175 V---HPITA-----------VQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGR 215 (252)
Q Consensus 175 ~---~~~~~-----------~q~~~~~~~~~~~-~~l~~~~~~~gi~v~a~spl~~ 215 (252)
. ..+++ ..++.+.+-+..+ ..+-+++.+.|...++.+||-.
T Consensus 270 ~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vr 325 (349)
T PLN02428 270 DLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVR 325 (349)
T ss_pred HHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 2 23333 3334444444433 7788889999999999999863
No 44
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=82.24 E-value=36 Score=30.30 Aligned_cols=153 Identities=12% Similarity=0.068 Sum_probs=92.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCCC--------cHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQN--------ANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYV 110 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g--------~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i 110 (252)
+.++..+.+..+.+.|++.|=.--....+ ..+...=+++++.-..++.|..=... .++.+.
T Consensus 123 ~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~g~~~~l~vDaN~----------~~~~~~- 191 (352)
T cd03325 123 RPSDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREAVGPDIDIGVDFHG----------RVSKPM- 191 (352)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECCC----------CCCHHH-
Confidence 45666777788889999988754321100 12222334555422223333322211 134433
Q ss_pred HHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCcc-EEEccCCCHHHHHHHhhcCCceEEeeecCccc
Q 025500 111 RSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWT 189 (252)
Q Consensus 111 ~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~ 189 (252)
..+.++.|. ..++.++..|-... .++.+.+|+++.-+. +.|=|.++..++..+++...++++|+.....-
T Consensus 192 ---A~~~~~~l~--~~~i~~iEeP~~~~----d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~G 262 (352)
T cd03325 192 ---AKDLAKELE--PYRLLFIEEPVLPE----NVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAG 262 (352)
T ss_pred ---HHHHHHhcc--ccCCcEEECCCCcc----CHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccC
Confidence 333444442 34566677665432 377888888876555 45556688899999888778899999876543
Q ss_pred cc-hhhhHHHHHHHhCCeEEecc
Q 025500 190 RD-IEEEIIPLCRELGIGIVPYS 211 (252)
Q Consensus 190 ~~-~~~~l~~~~~~~gi~v~a~s 211 (252)
.- .-..+.+.|+++|+.++..+
T Consensus 263 Git~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 263 GITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred CHHHHHHHHHHHHHcCCcEeccC
Confidence 21 12789999999999998765
No 45
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=82.00 E-value=37 Score=30.25 Aligned_cols=153 Identities=9% Similarity=0.037 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASL 118 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 118 (252)
+.++..+....+.+.|++.|=.--...+-..+...=+++++.-.+++.|..-... .++.+...+-+ +.|
T Consensus 141 ~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~d~~~v~air~~~g~~~~l~vDaN~----------~~~~~~A~~~~-~~l 209 (355)
T cd03321 141 GAKLATERAVTAAEEGFHAVKTKIGYPTADEDLAVVRSIRQAVGDGVGLMVDYNQ----------SLTVPEAIERG-QAL 209 (355)
T ss_pred hHHHHHHHHHHHHHhhhHHHhhhcCCCChHhHHHHHHHHHHhhCCCCEEEEeCCC----------CcCHHHHHHHH-HHH
Confidence 3456666667777788876543211111012223334555433335544433211 24555433322 233
Q ss_pred HHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCcc-EEEccCCCHHHHHHHhhcCCceEEeeecCccccchh-hhH
Q 025500 119 KRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIE-EEI 196 (252)
Q Consensus 119 ~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~-~~l 196 (252)
+.+ ++.++..|-.. +.++.+.+++++-.|. +.|=+.++...+.++++...++++|+..+..-.-.+ ..+
T Consensus 210 ~~~-----~i~~iEeP~~~----~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~i 280 (355)
T cd03321 210 DQE-----GLTWIEEPTLQ----HDYEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRA 280 (355)
T ss_pred HcC-----CCCEEECCCCC----cCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHH
Confidence 444 45566666433 2467778888775433 445555888999999888889999998776543222 679
Q ss_pred HHHHHHhCCeEEecc
Q 025500 197 IPLCRELGIGIVPYS 211 (252)
Q Consensus 197 ~~~~~~~gi~v~a~s 211 (252)
.+.|+++|+.++...
T Consensus 281 a~~A~~~gi~~~~h~ 295 (355)
T cd03321 281 SALAEQAGIPMSSHL 295 (355)
T ss_pred HHHHHHcCCeecccc
Confidence 999999999987554
No 46
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=81.83 E-value=37 Score=30.10 Aligned_cols=152 Identities=14% Similarity=0.123 Sum_probs=90.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCC--C-----cHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQ--N-----ANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVR 111 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~--g-----~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~ 111 (252)
+.++..+..+.+.+.|++.|=.--..+. + ...+.+ +++++.-..++-|..-.. ..++++...
T Consensus 120 ~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v-~avr~~~g~~~~l~vDan----------~~~~~~~A~ 188 (341)
T cd03327 120 DLDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELV-RAIREAVGYDVDLMLDCY----------MSWNLNYAI 188 (341)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCcchHHHHHHHHHH-HHHHHHhCCCCcEEEECC----------CCCCHHHHH
Confidence 5666777888888999998764321111 0 112222 334432112332322111 123444333
Q ss_pred HHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCcc-EEEccCCCHHHHHHHhhcCCceEEeeecCcccc
Q 025500 112 SCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTR 190 (252)
Q Consensus 112 ~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~ 190 (252)
+.+++|. .+++.++..|-... .++.+.+++++..+. +.|=+-++...+.++++....+++|+..+..-.
T Consensus 189 ----~~~~~l~--~~~~~~iEeP~~~~----d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GG 258 (341)
T cd03327 189 ----KMARALE--KYELRWIEEPLIPD----DIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGG 258 (341)
T ss_pred ----HHHHHhh--hcCCccccCCCCcc----CHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCC
Confidence 2333332 24666777765432 366777888876665 556566888999999988889999998776543
Q ss_pred ch-hhhHHHHHHHhCCeEEecc
Q 025500 191 DI-EEEIIPLCRELGIGIVPYS 211 (252)
Q Consensus 191 ~~-~~~l~~~~~~~gi~v~a~s 211 (252)
-. -..+.+.|+++|+.++..+
T Consensus 259 it~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 259 ITELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred HHHHHHHHHHHHHcCCeecccc
Confidence 22 2789999999999988764
No 47
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=81.72 E-value=17 Score=32.83 Aligned_cols=85 Identities=16% Similarity=0.036 Sum_probs=62.8
Q ss_pred EEEccCCCCCCCHHHHHHHHHHHHHc------CCccEEEccCCCHHHHHHHhhcCCceEEeeecCccccchh-hhHHHHH
Q 025500 128 LYYQHRVDTSVPIEETIGEMKKLVEE------GKIKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIE-EEIIPLC 200 (252)
Q Consensus 128 l~~lh~~~~~~~~~~~~~~L~~l~~~------G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~-~~l~~~~ 200 (252)
++++..|-...+..+.++.+.+++++ +.--..|=+.++...+.++++....+++|+..+-.-.-.+ ..+.+.|
T Consensus 229 ~~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA 308 (369)
T cd03314 229 PLRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYC 308 (369)
T ss_pred cEEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHH
Confidence 45777775544333457777788766 4555567677889999999988889999998876543222 7899999
Q ss_pred HHhCCeEEeccc
Q 025500 201 RELGIGIVPYSP 212 (252)
Q Consensus 201 ~~~gi~v~a~sp 212 (252)
+.+|+.++..+.
T Consensus 309 ~a~Gi~~~~h~~ 320 (369)
T cd03314 309 KEHGVGAYLGGS 320 (369)
T ss_pred HHcCCcEEEeCC
Confidence 999999998654
No 48
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=81.37 E-value=5.9 Score=32.68 Aligned_cols=67 Identities=19% Similarity=0.256 Sum_probs=45.4
Q ss_pred HHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEcc-CCCHHHHHHHhhcCCceEEeeec
Q 025500 117 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPGTIRRAHAVHPITAVQMEW 185 (252)
Q Consensus 117 sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~ 185 (252)
.+..+|.|++=+.+........+.+.+ ..+.+.. .+.+..+||. +-+++.+.++.+...++++|+.-
T Consensus 18 ~~~~~Gad~iGfI~~~~S~R~V~~~~a-~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg 85 (210)
T PRK01222 18 AAAELGADAIGFVFYPKSPRYVSPEQA-AELAAAL-PPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHG 85 (210)
T ss_pred HHHHcCCCEEEEccCCCCCCcCCHHHH-HHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECC
Confidence 455799999998754443333444333 3332222 3568899998 57888899998888999999943
No 49
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=81.32 E-value=14 Score=30.56 Aligned_cols=83 Identities=18% Similarity=0.237 Sum_probs=55.3
Q ss_pred HHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCC-ccEEEcc-CCCHHHHHHHhhcCCceEEeeecCccccchhh
Q 025500 117 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLS-EASPGTIRRAHAVHPITAVQMEWSLWTRDIEE 194 (252)
Q Consensus 117 sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~ 194 (252)
....+|.||+=+++.-......+.+. ..++.+.-. ++.+||. |.+.+.+.++++..+++.+|+.-. ...
T Consensus 17 ~a~~~gad~iG~If~~~SpR~Vs~~~----a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~-----e~~ 87 (208)
T COG0135 17 AAAKAGADYIGFIFVPKSPRYVSPEQ----AREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGD-----EDP 87 (208)
T ss_pred HHHHcCCCEEEEEEcCCCCCcCCHHH----HHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCC-----CCH
Confidence 35678999998888864444444433 333443333 7899997 477888999999899999998433 125
Q ss_pred hHHHHHHHhC-CeEE
Q 025500 195 EIIPLCRELG-IGIV 208 (252)
Q Consensus 195 ~l~~~~~~~g-i~v~ 208 (252)
+.++..++.. +.|+
T Consensus 88 ~~~~~l~~~~~~~v~ 102 (208)
T COG0135 88 EYIDQLKEELGVPVI 102 (208)
T ss_pred HHHHHHHhhcCCceE
Confidence 5666666554 5554
No 50
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=81.31 E-value=17 Score=31.01 Aligned_cols=102 Identities=20% Similarity=0.145 Sum_probs=64.5
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEc-cCCCCC-CCHHH----HHHHHHHHHHcCCccEEEccCCCHHHHHHHhhcCCc
Q 025500 105 GAPDYVRSCCEASLKRLDVDYIDLYYQ-HRVDTS-VPIEE----TIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPI 178 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~l-h~~~~~-~~~~~----~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 178 (252)
.+.+.+.+..++.+ +-|.+.||+-.- .+|+.. .+.++ +...++.+++.-.+. |.+-+++++.++++++.+..
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G~~ 98 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAGAD 98 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhCCC
Confidence 45566666555554 668899999643 234332 22233 333456666553443 88999999999999987633
Q ss_pred eEEeeecCccccchhhhHHHHHHHhCCeEEeccc
Q 025500 179 TAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSP 212 (252)
Q Consensus 179 ~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~sp 212 (252)
-+ +..+....+ ..+++.++++|..++.+..
T Consensus 99 iI--Ndisg~~~~--~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 99 II--NDVSGGSDD--PAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred EE--EeCCCCCCC--hHHHHHHHHcCCCEEEECC
Confidence 22 333443322 5789999999999999543
No 51
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=81.15 E-value=28 Score=28.78 Aligned_cols=145 Identities=12% Similarity=-0.016 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhc----CCCCCEEEEeccCccCCCCcccccCCChHHHHHHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ----LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~----~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 114 (252)
|++.+.++++.|++.|+...|+- ++.+-..+.. ..+.++++.--. ...+.+++.+
T Consensus 13 D~~~~~~~l~~al~~~~~~~~ii--------~~~l~p~m~~vG~~w~~gei~vaqe~-------------~as~~~~~~l 71 (213)
T cd02069 13 IRDGIEEDTEEARQQYARPLEII--------NGPLMDGMKVVGDLFGAGKMFLPQVL-------------KSARVMKAAV 71 (213)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHHHHHHccCCCcHHHHH-------------HHHHHHHHHH
Confidence 78999999999999987644421 2334444443 345566653221 2344555555
Q ss_pred HHHHHHcCCC-----cccEEEccCCCCCCCHHHHHHHHHHHHHcCC-ccEEEccCCCHHHHHHHhhcCCceEEeeecCcc
Q 025500 115 EASLKRLDVD-----YIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPGTIRRAHAVHPITAVQMEWSLW 188 (252)
Q Consensus 115 ~~sL~~Lg~d-----~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~ 188 (252)
.....++... ..=-+++-.+..+.+--...=.-.-|+..|. |.++|.. .+++.+.++.....++++.+.....
T Consensus 72 ~~l~~~l~~~~~~~~~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~-vp~e~~v~~~~~~~~~~V~lS~~~~ 150 (213)
T cd02069 72 AYLEPYMEKEKGENSSKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVM-VPIEKILEAAKEHKADIIGLSGLLV 150 (213)
T ss_pred HHHHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEccchh
Confidence 5553322211 1112333334333332222222234566776 7888864 4667777777777888888887765
Q ss_pred ccchh-hhHHHHHHHhCC
Q 025500 189 TRDIE-EEIIPLCRELGI 205 (252)
Q Consensus 189 ~~~~~-~~l~~~~~~~gi 205 (252)
..... .++++.+++.+.
T Consensus 151 ~~~~~~~~~i~~L~~~~~ 168 (213)
T cd02069 151 PSLDEMVEVAEEMNRRGI 168 (213)
T ss_pred ccHHHHHHHHHHHHhcCC
Confidence 54323 788888888866
No 52
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=80.35 E-value=22 Score=30.25 Aligned_cols=104 Identities=16% Similarity=0.166 Sum_probs=61.1
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEccCCCC-----CCCHHHHHHHHHHHHHc-CCccEEEcc---CCCHHHHHHHhhc
Q 025500 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT-----SVPIEETIGEMKKLVEE-GKIKYIGLS---EASPGTIRRAHAV 175 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~-----~~~~~~~~~~L~~l~~~-G~ir~iGvs---~~~~~~l~~~~~~ 175 (252)
++.+... .+-+.|.++|++++++-+...... .......|+.++.+++. +..+...+. ....+.++++.+.
T Consensus 19 ~~~~~k~-~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~ 97 (263)
T cd07943 19 FTLEQVR-AIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAADL 97 (263)
T ss_pred cCHHHHH-HHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHHc
Confidence 4555555 455569999999999985432110 01112246666666443 346666554 3345667777663
Q ss_pred CCceEEeeecCccccchhhhHHHHHHHhCCeEEec
Q 025500 176 HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPY 210 (252)
Q Consensus 176 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~ 210 (252)
.++.+.+-++.-+.....+.+++++++|+.+..+
T Consensus 98 -g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 98 -GVDVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred -CCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 4556655444433222377899999999877654
No 53
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=80.09 E-value=17 Score=33.41 Aligned_cols=109 Identities=18% Similarity=0.254 Sum_probs=67.8
Q ss_pred ccceeecccccCC----CCCCCCCHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhcCCCCCEEEEeccCccC
Q 025500 20 VSKLGYGCMNLSG----GYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAG 95 (252)
Q Consensus 20 vs~lglG~~~~g~----~~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~~ 95 (252)
|.+|++|..+|.. .-++.-+.+++..++..|-+.|+.-|..-=.||-
T Consensus 148 vNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIygl----------------------------- 198 (416)
T COG0635 148 VNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGL----------------------------- 198 (416)
T ss_pred CCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC-----------------------------
Confidence 3488888877654 1233346677788888888888776655555551
Q ss_pred CCCcccccCCChHHHHHHHHHHHHHcCCCcccEEEccC-CCCC----------CC-H---HHHHHHHH-HHHHcCCccEE
Q 025500 96 IGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHR-VDTS----------VP-I---EETIGEMK-KLVEEGKIKYI 159 (252)
Q Consensus 96 ~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~-~~~~----------~~-~---~~~~~~L~-~l~~~G~ir~i 159 (252)
+.-+.+.+.+.+++.++ |+.|+|.+|.+-. |... .+ . .+.++... .|.+.|- +.+
T Consensus 199 -------P~QT~~~~~~~l~~a~~-l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~y 269 (416)
T COG0635 199 -------PGQTLESLKEDLEQALE-LGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQY 269 (416)
T ss_pred -------CCCCHHHHHHHHHHHHh-CCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEE
Confidence 01356667777776664 6689999998833 3110 11 1 23455444 4556666 999
Q ss_pred EccCCCH
Q 025500 160 GLSEASP 166 (252)
Q Consensus 160 Gvs~~~~ 166 (252)
|+|||..
T Consensus 270 eisnfa~ 276 (416)
T COG0635 270 EISNFAK 276 (416)
T ss_pred eechhcC
Confidence 9999886
No 54
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=78.57 E-value=21 Score=32.57 Aligned_cols=84 Identities=8% Similarity=0.005 Sum_probs=62.4
Q ss_pred ccEEEccCCCCCCCHHHHHHHHHHHHHcCCcc-EEEccCCCHHHHHHHhhcCCceEEeeecCccccch-hhhHHHHHHHh
Q 025500 126 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDI-EEEIIPLCREL 203 (252)
Q Consensus 126 iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~-~~~l~~~~~~~ 203 (252)
.++.++..|-.. +.++.+.+|++.-.+. +.|=|-++...++++++...++++|+.....-.-. -..+.+.|+.+
T Consensus 232 ~~l~~iEeP~~~----~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit~~~kia~lA~~~ 307 (404)
T PRK15072 232 YRLFWLEDPTPA----ENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITHLRRIADFAALY 307 (404)
T ss_pred cCCcEEECCCCc----cCHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHHHHHHHHHHHHHc
Confidence 466777766443 2367788888876555 56666789999999998888999999877654321 27899999999
Q ss_pred CCeEEecccC
Q 025500 204 GIGIVPYSPL 213 (252)
Q Consensus 204 gi~v~a~spl 213 (252)
|+.++.++..
T Consensus 308 gi~~~~h~~~ 317 (404)
T PRK15072 308 QVRTGSHGPT 317 (404)
T ss_pred CCceeeccCc
Confidence 9999986543
No 55
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=77.81 E-value=3.9 Score=29.68 Aligned_cols=54 Identities=24% Similarity=0.191 Sum_probs=41.2
Q ss_pred cCCCHHHHHHHhhcCCceEEeeecCccccch-hhhHHHHHHHhCCeEEecccCccc
Q 025500 162 SEASPGTIRRAHAVHPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRG 216 (252)
Q Consensus 162 s~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~-~~~l~~~~~~~gi~v~a~spl~~G 216 (252)
+.++...++++++...++++|+.....-.-. -..+.+.|+++|+.++..+. .++
T Consensus 3 ~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~ 57 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESG 57 (111)
T ss_dssp TSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSH
T ss_pred CCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCc
Confidence 4567888899988888899999866543211 27899999999999999997 544
No 56
>PLN00191 enolase
Probab=77.54 E-value=27 Score=32.51 Aligned_cols=103 Identities=11% Similarity=0.091 Sum_probs=72.0
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEcc--CCCHHHHHHHhhcCCceEEe
Q 025500 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS--EASPGTIRRAHAVHPITAVQ 182 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs--~~~~~~l~~~~~~~~~~~~q 182 (252)
.+++.+.+-++..+++ .++.++..|-.. +-|+.+.+|.++.++.-+|=- ..++..+.++++....++++
T Consensus 295 ~s~~e~i~~~~~L~~~-----y~I~~IEDPl~~----~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~ 365 (457)
T PLN00191 295 KSGDELIDLYKEFVSD-----YPIVSIEDPFDQ----DDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALL 365 (457)
T ss_pred cCHHHHHHHHHHHhhc-----CCcEEEECCCCc----ccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEE
Confidence 4666666666655543 357788887554 347777888888888766622 25588899998888889999
Q ss_pred eecCccccchh-hhHHHHHHHhCCeEEecc-cCccc
Q 025500 183 MEWSLWTRDIE-EEIIPLCRELGIGIVPYS-PLGRG 216 (252)
Q Consensus 183 ~~~~~~~~~~~-~~l~~~~~~~gi~v~a~s-pl~~G 216 (252)
+..|-.-.-.+ .++++.|+++|+.++... ....+
T Consensus 366 iKl~qiGGITea~~~a~lA~~~G~~~~ishrsgET~ 401 (457)
T PLN00191 366 LKVNQIGTVTESIEAVKMSKAAGWGVMTSHRSGETE 401 (457)
T ss_pred ecccccCCHHHHHHHHHHHHHCCCEEEeCCCCccch
Confidence 98876554222 789999999999997643 44433
No 57
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=77.42 E-value=1 Score=40.16 Aligned_cols=54 Identities=17% Similarity=0.309 Sum_probs=37.3
Q ss_pred cCCccEEEccCCCHHHHHHHhhcC-CceEEeeecCccccchhhhHHHHHHHhCCe
Q 025500 153 EGKIKYIGLSEASPGTIRRAHAVH-PITAVQMEWSLWTRDIEEEIIPLCRELGIG 206 (252)
Q Consensus 153 ~G~ir~iGvs~~~~~~l~~~~~~~-~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~ 206 (252)
-|+||++||--++.+.+.++.... .-+..+.+..++.......+++.|++.||+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 399999999999999999887652 122223333333332236899999999986
No 58
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=77.27 E-value=33 Score=28.40 Aligned_cols=119 Identities=15% Similarity=0.249 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEeCc-CCcCCCcHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHH
Q 025500 38 VSEEDGISMIKHAFSKGITFFDTA-DVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEA 116 (252)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta-~~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (252)
.+.++..++++...++||..|+.. +..+. ...+.+.+..+..+...+..... ...+.++..++.
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~--------------~~~~~i~~~~~~ 75 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASE-DDFEQVRRLREALPNARLQALCR--------------ANEEDIERAVEA 75 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSH-HHHHHHHHHHHHHHSSEEEEEEE--------------SCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCH-HHHHHhhhhhhhhcccccceeee--------------ehHHHHHHHHHh
Confidence 478999999999999999999998 33331 23344544444333333322222 124445555543
Q ss_pred HHHHcCCCcccEEEccCC-----CCCCC----HHHHHHHHHHHHHcCCccEEEccC---CCHHHHHHH
Q 025500 117 SLKRLDVDYIDLYYQHRV-----DTSVP----IEETIGEMKKLVEEGKIKYIGLSE---ASPGTIRRA 172 (252)
Q Consensus 117 sL~~Lg~d~iDl~~lh~~-----~~~~~----~~~~~~~L~~l~~~G~ir~iGvs~---~~~~~l~~~ 172 (252)
. ...|.+.+.++.--++ ..... ++.+.+.++..++.|.-..+++-. ++++.+.++
T Consensus 76 ~-~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~ 142 (237)
T PF00682_consen 76 A-KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLEL 142 (237)
T ss_dssp H-HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHH
T ss_pred h-HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHH
Confidence 3 4567666665543221 00011 233445555566667666666644 344444443
No 59
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=77.27 E-value=36 Score=31.96 Aligned_cols=67 Identities=7% Similarity=0.057 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHHHHcCCccE----EEccCCCHHHHHHHhhc---CCceEEeeecCccccchhhhHHHHHHHhCC
Q 025500 137 SVPIEETIGEMKKLVEEGKIKY----IGLSEASPGTIRRAHAV---HPITAVQMEWSLWTRDIEEEIIPLCRELGI 205 (252)
Q Consensus 137 ~~~~~~~~~~L~~l~~~G~ir~----iGvs~~~~~~l~~~~~~---~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi 205 (252)
....++..++++.+++.|.... +|+-+.+.+.+++..+. ..++.. .++.+.+.....+.+.+++++.
T Consensus 319 ~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~~~--~~~~~tP~PGT~l~~~~~~~~~ 392 (497)
T TIGR02026 319 GTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPDQA--NWLMYTPWPFTSLFGELSDRVE 392 (497)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCCce--EEEEecCCCCcHHHHHHHhhcc
Confidence 3456788899999999997433 47777788777665443 334333 3344444434678888887764
No 60
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=77.21 E-value=47 Score=28.64 Aligned_cols=153 Identities=12% Similarity=0.070 Sum_probs=91.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEeC---cCCcCC-----CcHHHHHHHHHhcCCCC-CEEEEeccCccCCCCcccccCCChHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDT---ADVYGQ-----NANEVLLGKALKQLPRE-KIQVATKFGIAGIGVAGVIVKGAPDY 109 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dt---a~~Yg~-----g~se~~ig~~l~~~~R~-~~~i~tK~~~~~~~~~~~~~~~~~~~ 109 (252)
+.++..++.+.+.++|+..||. ++.+.. +.+.+.+.+.++.+.+. ++-|..|+.+.. +.
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~------------~~ 167 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPNV------------TD 167 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCCCc------------hh
Confidence 5788888889999999999985 222211 13455665666553332 678888985321 12
Q ss_pred HHHHHHHHHHHcCCCcccEEEc------cCCCCC-------------CCHHHHHHHHHHHHHcCCccEEEccCC-CHHHH
Q 025500 110 VRSCCEASLKRLDVDYIDLYYQ------HRVDTS-------------VPIEETIGEMKKLVEEGKIKYIGLSEA-SPGTI 169 (252)
Q Consensus 110 i~~~~~~sL~~Lg~d~iDl~~l------h~~~~~-------------~~~~~~~~~L~~l~~~G~ir~iGvs~~-~~~~l 169 (252)
+ ..+-+.++..|.|.++++-. |..... ....-.++.+.++++.=.+.-||+... +++.+
T Consensus 168 ~-~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da 246 (296)
T cd04740 168 I-VEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDA 246 (296)
T ss_pred H-HHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHH
Confidence 2 23345677889887776421 110000 001125677778877667889999985 78888
Q ss_pred HHHhhcCCceEEeeecCc-cccc----hhhhHHHHHHHhCC
Q 025500 170 RRAHAVHPITAVQMEWSL-WTRD----IEEEIIPLCRELGI 205 (252)
Q Consensus 170 ~~~~~~~~~~~~q~~~~~-~~~~----~~~~l~~~~~~~gi 205 (252)
.+++..+ .+.+|+-=.+ .++. ...++-++.+++|.
T Consensus 247 ~~~l~~G-Ad~V~igra~l~~p~~~~~i~~~l~~~~~~~g~ 286 (296)
T cd04740 247 LEFLMAG-ASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGI 286 (296)
T ss_pred HHHHHcC-CCEEEEchhhhcChHHHHHHHHHHHHHHHHcCC
Confidence 8888755 6778773222 2221 22566666777764
No 61
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=77.05 E-value=53 Score=29.14 Aligned_cols=150 Identities=19% Similarity=0.138 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhc-CCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHHHH
Q 025500 41 EDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ-LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLK 119 (252)
Q Consensus 41 ~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~-~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 119 (252)
++..+.+..+.+.|++.|=.-- +.....+.+ +++++ .+ ++.|..=.. ..++.+... + ++
T Consensus 139 ~~~~~~~~~~~~~Gf~~~KiKv--~~~~d~~~l-~~vr~~~g--~~~l~lDaN----------~~~~~~~a~--~---~~ 198 (354)
T cd03317 139 EQLLKQIERYLEEGYKRIKLKI--KPGWDVEPL-KAVRERFP--DIPLMADAN----------SAYTLADIP--L---LK 198 (354)
T ss_pred HHHHHHHHHHHHcCCcEEEEec--ChHHHHHHH-HHHHHHCC--CCeEEEECC----------CCCCHHHHH--H---HH
Confidence 6677888888999999774321 221223333 44444 33 333332221 124444432 2 34
Q ss_pred HcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCC-ccEEEccCCCHHHHHHHhhcCCceEEeeecCccccch-hhhHH
Q 025500 120 RLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDI-EEEII 197 (252)
Q Consensus 120 ~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~-~~~l~ 197 (252)
+| +..++.++..|-.. +-++.+.+++++-. --+.|=|-++.+.+.++++...++++|+..+..-.-. -..+.
T Consensus 199 ~l--~~~~i~~iEeP~~~----~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~ 272 (354)
T cd03317 199 RL--DEYGLLMIEQPLAA----DDLIDHAELQKLLKTPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIH 272 (354)
T ss_pred Hh--hcCCccEEECCCCh----hHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHH
Confidence 43 23466777766432 33666777776533 3455666788999999998888899999876654321 27899
Q ss_pred HHHHHhCCeEEecccCccc
Q 025500 198 PLCRELGIGIVPYSPLGRG 216 (252)
Q Consensus 198 ~~~~~~gi~v~a~spl~~G 216 (252)
..|+.+|+.++..+.+..|
T Consensus 273 ~~A~~~gi~~~~g~~~es~ 291 (354)
T cd03317 273 DLCQEHGIPVWCGGMLESG 291 (354)
T ss_pred HHHHHcCCcEEecCcccch
Confidence 9999999999876655443
No 62
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=76.89 E-value=40 Score=28.87 Aligned_cols=105 Identities=12% Similarity=0.172 Sum_probs=62.0
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCC------CHHHHHHHHHHHHHcCCccEEEccCCC---HHHHHHHhh
Q 025500 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV------PIEETIGEMKKLVEEGKIKYIGLSEAS---PGTIRRAHA 174 (252)
Q Consensus 104 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~------~~~~~~~~L~~l~~~G~ir~iGvs~~~---~~~l~~~~~ 174 (252)
.++.+... .+-+.|.++|+++|++-+........ .-.+.++.+..+.+ +..+-.+++... .+.++.+.+
T Consensus 16 ~f~~~~~~-~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a~~ 93 (266)
T cd07944 16 DFGDEFVK-AIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPASG 93 (266)
T ss_pred cCCHHHHH-HHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHHhc
Confidence 35555554 56666999999999998765532210 11456666666553 346666665443 456666654
Q ss_pred cCCceEEeeecCccccchhhhHHHHHHHhCCeEEecc
Q 025500 175 VHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYS 211 (252)
Q Consensus 175 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~s 211 (252)
. .++.+.+.+....-+.-.+.+++++++|+.|...-
T Consensus 94 ~-gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~ 129 (266)
T cd07944 94 S-VVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNL 129 (266)
T ss_pred C-CcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEE
Confidence 3 34555454433332223778888999998776443
No 63
>PRK00077 eno enolase; Provisional
Probab=76.71 E-value=38 Score=31.17 Aligned_cols=99 Identities=10% Similarity=0.045 Sum_probs=68.0
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcC--CccEEEccC--CCHHHHHHHhhcCCceE
Q 025500 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGLSE--ASPGTIRRAHAVHPITA 180 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G--~ir~iGvs~--~~~~~l~~~~~~~~~~~ 180 (252)
++++...+.+.+.++.+ ++.++..|-... -|+.+.+|.++- ++.-+|=-. .++..+.++++....++
T Consensus 261 ~s~~e~~~~~~~l~e~y-----~i~~iEdPl~~~----D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~ 331 (425)
T PRK00077 261 LTSEEMIDYLAELVDKY-----PIVSIEDGLDEN----DWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANS 331 (425)
T ss_pred CCHHHHHHHHHHHHhhC-----CcEEEEcCCCCc----cHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCCE
Confidence 56777777777776664 577788876543 366666666663 455443332 36889999988888899
Q ss_pred EeeecCccccchh-hhHHHHHHHhCCeEEe-ccc
Q 025500 181 VQMEWSLWTRDIE-EEIIPLCRELGIGIVP-YSP 212 (252)
Q Consensus 181 ~q~~~~~~~~~~~-~~l~~~~~~~gi~v~a-~sp 212 (252)
+|+..+-.-.-.+ .++...|+++|+.++. .+.
T Consensus 332 v~ik~~~~GGitea~~ia~lA~~~gi~~~vsh~s 365 (425)
T PRK00077 332 ILIKVNQIGTLTETLDAIELAKRAGYTAVVSHRS 365 (425)
T ss_pred EEeCccccCCHHHHHHHHHHHHHcCCeEEEeCCC
Confidence 9998876553222 7899999999998654 443
No 64
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=75.65 E-value=24 Score=29.71 Aligned_cols=168 Identities=13% Similarity=0.054 Sum_probs=86.0
Q ss_pred cceeecccccCCCCCCCCCHHHHHHHHHHHHHC-CCCEEeCcCCcCCCcHHHHHHHHHhcCCCCCEEEEeccCccCCCCc
Q 025500 21 SKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSK-GITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVA 99 (252)
Q Consensus 21 s~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~-Gin~~Dta~~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~ 99 (252)
|++-+||..+.+ .+++..|+++ |-..+=.|=---+-.....-...+..++++++.+.-...
T Consensus 9 SRL~lGTgky~s-----------~~~m~~ai~aSg~evvTvalRR~~~~~~~~~~~~~~~i~~~~~~lLPNTa------- 70 (247)
T PF05690_consen 9 SRLILGTGKYPS-----------PEVMREAIEASGAEVVTVALRRVNLGSKPGGDNILDYIDRSGYTLLPNTA------- 70 (247)
T ss_dssp -SEEEE-STSSS-----------HHHHHHHHHHTT-SEEEEECCGSTTTS-TTCHHCCCCTTCCTSEEEEE-T-------
T ss_pred cceEEecCCCCC-----------HHHHHHHHHHhCCcEEEEEEecccCCCCCCCccHHHHhcccCCEECCcCC-------
Confidence 588888877542 4455555554 655554332110000000111233335666665543332
Q ss_pred ccccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCC-CCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhcCCc
Q 025500 100 GVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPI 178 (252)
Q Consensus 100 ~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 178 (252)
-+.+.+...+..+-+.+.+++++|-+=.+.++..- .+..+++++-++|+++|-+- +=.++.++-..+++.+.+ .
T Consensus 71 ---Gc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~V-lPY~~~D~v~akrL~d~G-c 145 (247)
T PF05690_consen 71 ---GCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLAKRLEDAG-C 145 (247)
T ss_dssp ---T-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EE-EEEE-S-HHHHHHHHHTT--
T ss_pred ---CCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEE-eecCCCCHHHHHHHHHCC-C
Confidence 24578888888999999999999999888776543 35678999999999999754 344555665666665542 2
Q ss_pred eEEeeecCccccc---hh-hhHHHHHHHhCCeEEecc
Q 025500 179 TAVQMEWSLWTRD---IE-EEIIPLCRELGIGIVPYS 211 (252)
Q Consensus 179 ~~~q~~~~~~~~~---~~-~~l~~~~~~~gi~v~a~s 211 (252)
..++.--++.-.. .+ ..+-..+.+.+|.|+.-.
T Consensus 146 aavMPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIvDA 182 (247)
T PF05690_consen 146 AAVMPLGSPIGSGRGIQNPYNLRIIIERADVPVIVDA 182 (247)
T ss_dssp SEBEEBSSSTTT---SSTHHHHHHHHHHGSSSBEEES
T ss_pred CEEEecccccccCcCCCCHHHHHHHHHhcCCcEEEeC
Confidence 2222222222111 01 223334556688887644
No 65
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=75.56 E-value=33 Score=29.13 Aligned_cols=104 Identities=19% Similarity=0.152 Sum_probs=67.7
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEc-cCCCCC-----CCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhcCCc
Q 025500 105 GAPDYVRSCCEASLKRLDVDYIDLYYQ-HRVDTS-----VPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPI 178 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~l-h~~~~~-----~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 178 (252)
.+.+.+.+..++.+ .-|.|.||+-.- -+|+.. ...+.+...++.+++.-.+- |.+.+++++.++++++.+..
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~p-iSIDT~~~~v~~aaL~~g~~ 98 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVP-ISVDTFNAEVAEAALKAGAD 98 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCe-EEEeCCcHHHHHHHHHhCCC
Confidence 45667776666654 678999999754 334321 11233455666666553333 89999999999999987633
Q ss_pred eEEeeecCccccchhhhHHHHHHHhCCeEEecccCc
Q 025500 179 TAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLG 214 (252)
Q Consensus 179 ~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~ 214 (252)
+-+..+....+ .++++.++++|..++....-+
T Consensus 99 --iINdis~~~~~--~~~~~l~~~~~~~vV~m~~~~ 130 (258)
T cd00423 99 --IINDVSGGRGD--PEMAPLAAEYGAPVVLMHMDG 130 (258)
T ss_pred --EEEeCCCCCCC--hHHHHHHHHcCCCEEEECcCC
Confidence 22333443322 578999999999999886543
No 66
>PRK14017 galactonate dehydratase; Provisional
Probab=75.25 E-value=63 Score=29.12 Aligned_cols=155 Identities=12% Similarity=0.103 Sum_probs=93.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCC-----cCCC---cHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADV-----YGQN---ANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYV 110 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~-----Yg~g---~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i 110 (252)
++++..+.+..+.+.|++.|=.--. ++.. ..+...=+++++.-..++.|..-.- ..++.+.
T Consensus 124 ~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~~~~~~~~~~~d~~~i~avr~~~g~~~~l~vDaN----------~~w~~~~- 192 (382)
T PRK14017 124 RPADVAEAARARVERGFTAVKMNGTEELQYIDSPRKVDAAVARVAAVREAVGPEIGIGVDFH----------GRVHKPM- 192 (382)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCcCCccccccHHHHHHHHHHHHHHHHHhCCCCeEEEECC----------CCCCHHH-
Confidence 5677778888888999998765321 1100 0111222344431112333332221 1234443
Q ss_pred HHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCcc-EEEccCCCHHHHHHHhhcCCceEEeeecCccc
Q 025500 111 RSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWT 189 (252)
Q Consensus 111 ~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~ 189 (252)
..+.+++|. .+++.++..|-... .++.+.+|+++..+. ..|=|-++...+.++++...++++|+..+..-
T Consensus 193 ---A~~~~~~l~--~~~~~~iEeP~~~~----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~G 263 (382)
T PRK14017 193 ---AKVLAKELE--PYRPMFIEEPVLPE----NAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAG 263 (382)
T ss_pred ---HHHHHHhhc--ccCCCeEECCCCcC----CHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccC
Confidence 233334442 24566777764432 357788888887665 55666688899999988888999999877654
Q ss_pred cc-hhhhHHHHHHHhCCeEEecccC
Q 025500 190 RD-IEEEIIPLCRELGIGIVPYSPL 213 (252)
Q Consensus 190 ~~-~~~~l~~~~~~~gi~v~a~spl 213 (252)
.- .-..+.+.|+++|+.++..+..
T Consensus 264 Git~~~~ia~~A~~~gi~~~~h~~~ 288 (382)
T PRK14017 264 GITECRKIAAMAEAYDVALAPHCPL 288 (382)
T ss_pred CHHHHHHHHHHHHHcCCeEeecCCC
Confidence 21 1278999999999999987653
No 67
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=75.11 E-value=59 Score=28.84 Aligned_cols=118 Identities=19% Similarity=0.199 Sum_probs=75.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEeCcCCcCC----------------C--cHHHHHHHHHhcCCCCCEEEEeccCccCCCCc
Q 025500 38 VSEEDGISMIKHAFSKGITFFDTADVYGQ----------------N--ANEVLLGKALKQLPREKIQVATKFGIAGIGVA 99 (252)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~----------------g--~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~ 99 (252)
++.+...++.++|-+.|+-+|=|--.+.. | ....++....+ ..+.+.+||-..
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~--~~kPiIlSTGma------- 157 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAK--KGKPIILSTGMA------- 157 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHh--cCCCEEEEcccc-------
Confidence 57888899999999999998876544331 0 12233333323 334677777653
Q ss_pred ccccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCC-CCHHHH-HHHHHHHHHcCCccEEEccCCCHHHHHHHhh
Q 025500 100 GVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-VPIEET-IGEMKKLVEEGKIKYIGLSEASPGTIRRAHA 174 (252)
Q Consensus 100 ~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-~~~~~~-~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~ 174 (252)
+-+.+.++++...++=.. |+.++|..... .+.+++ +..|-.|++.= ---||+|+|+...+..+..
T Consensus 158 ------~~~ei~~av~~~r~~g~~---~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l~A 224 (347)
T COG2089 158 ------TIEEIEEAVAILRENGNP---DIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAPLAA 224 (347)
T ss_pred ------cHHHHHHHHHHHHhcCCC---CeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHHHHH
Confidence 467788888776665443 99999997543 234432 45555555543 4469999999876555433
No 68
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=74.05 E-value=33 Score=29.03 Aligned_cols=91 Identities=18% Similarity=0.134 Sum_probs=53.8
Q ss_pred HHHHHHHcCCCcccEEEccCCCCCCCHH-HHHHHHHHHHHcCCccEEEccC-CCHHHHHHHhhcCCceEEeeecCccccc
Q 025500 114 CEASLKRLDVDYIDLYYQHRVDTSVPIE-ETIGEMKKLVEEGKIKYIGLSE-ASPGTIRRAHAVHPITAVQMEWSLWTRD 191 (252)
Q Consensus 114 ~~~sL~~Lg~d~iDl~~lh~~~~~~~~~-~~~~~L~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~~~~~~~~ 191 (252)
+-+.|+.+|. |.+.+|..+...... -.|+.+.++++.-.+.-|...+ .+.+.+.++......+.+.+---++...
T Consensus 160 ~~~~l~~~G~---~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~ 236 (254)
T TIGR00735 160 WAKEVEKLGA---GEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYRE 236 (254)
T ss_pred HHHHHHHcCC---CEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCC
Confidence 3344566765 556666654321111 1255666666665677776665 5677888888766565554422222222
Q ss_pred h-hhhHHHHHHHhCCeE
Q 025500 192 I-EEEIIPLCRELGIGI 207 (252)
Q Consensus 192 ~-~~~l~~~~~~~gi~v 207 (252)
. ..++.+.|+++|+.+
T Consensus 237 ~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 237 ITIGEVKEYLAERGIPV 253 (254)
T ss_pred CCHHHHHHHHHHCCCcc
Confidence 1 278899999999865
No 69
>PLN02363 phosphoribosylanthranilate isomerase
Probab=73.76 E-value=15 Score=31.33 Aligned_cols=66 Identities=21% Similarity=0.332 Sum_probs=44.6
Q ss_pred HHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEcc-CCCHHHHHHHhhcCCceEEeee
Q 025500 118 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPGTIRRAHAVHPITAVQME 184 (252)
Q Consensus 118 L~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~ 184 (252)
+.++|.|++=+++..........+. ...+.+......++.+||. |-+++.+.++.+...++++|+.
T Consensus 63 a~~~GaD~iGfIf~~~SpR~Vs~e~-a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLH 129 (256)
T PLN02363 63 AVEAGADFIGMILWPKSKRSISLSV-AKEISQVAREGGAKPVGVFVDDDANTILRAADSSDLELVQLH 129 (256)
T ss_pred HHHcCCCEEEEecCCCCCCcCCHHH-HHHHHHhccccCccEEEEEeCCCHHHHHHHHHhcCCCEEEEC
Confidence 4468999999976544333344433 3333333333246779996 7888889999888899999995
No 70
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=73.51 E-value=74 Score=29.16 Aligned_cols=152 Identities=11% Similarity=0.046 Sum_probs=88.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASL 118 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 118 (252)
+.++..+....+.+.|++.|=.--.-......+.+ +++++.-..++.+..-... .++++... +.+
T Consensus 196 ~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~d~~~v-~avRe~vG~~~~L~vDaN~----------~w~~~~A~----~~~ 260 (415)
T cd03324 196 SDEKLRRLCKEALAQGFTHFKLKVGADLEDDIRRC-RLAREVIGPDNKLMIDANQ----------RWDVPEAI----EWV 260 (415)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHH-HHHHHhcCCCCeEEEECCC----------CCCHHHHH----HHH
Confidence 45666677777888899977543111100112222 3445422223333322211 13444433 233
Q ss_pred HHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcC----CccEEEccCCCHHHHHHHhhcCCceEEeeecCccccch-h
Q 025500 119 KRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG----KIKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDI-E 193 (252)
Q Consensus 119 ~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G----~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~-~ 193 (252)
++|. ..++.++..|-... -++.+.+|+++. .--+.|=+-++...+.++++....+++|+..+..-.-. .
T Consensus 261 ~~L~--~~~l~~iEEP~~~~----d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a~dil~~d~~~~GGit~~ 334 (415)
T cd03324 261 KQLA--EFKPWWIEEPTSPD----DILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGAIDVVQIDSCRLGGVNEN 334 (415)
T ss_pred HHhh--ccCCCEEECCCCCC----cHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCCCCEEEeCccccCCHHHH
Confidence 3332 24566777775433 356666676653 33344545678889999988888999999887654321 2
Q ss_pred hhHHHHHHHhCCeEEecc
Q 025500 194 EEIIPLCRELGIGIVPYS 211 (252)
Q Consensus 194 ~~l~~~~~~~gi~v~a~s 211 (252)
..+.+.|+++|+.+..+.
T Consensus 335 ~kia~lA~a~gi~~~pH~ 352 (415)
T cd03324 335 LAVLLMAAKFGVPVCPHA 352 (415)
T ss_pred HHHHHHHHHcCCeEEEcC
Confidence 789999999999998764
No 71
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=73.38 E-value=47 Score=30.57 Aligned_cols=98 Identities=9% Similarity=0.046 Sum_probs=64.7
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcC--CccEEEccC-C-CHHHHHHHhhcCCceE
Q 025500 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGLSE-A-SPGTIRRAHAVHPITA 180 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G--~ir~iGvs~-~-~~~~l~~~~~~~~~~~ 180 (252)
++++...+-+++.++.+ ++.++..|-... -|+.+.+|.++- .+.-+|=-. . +...++++++....++
T Consensus 262 ~s~~eai~~~~~lle~~-----~i~~iEdPl~~~----D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~ 332 (425)
T TIGR01060 262 LTSEEMIEYYKELVEKY-----PIVSIEDGLSEE----DWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGVANS 332 (425)
T ss_pred cCHHHHHHHHHHHHhcC-----CcEEEEcCCCcc----cHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCCCE
Confidence 45555555555555443 567788775543 366667776664 555444332 2 5889999988888899
Q ss_pred EeeecCccccchh-hhHHHHHHHhCCeEEe-cc
Q 025500 181 VQMEWSLWTRDIE-EEIIPLCRELGIGIVP-YS 211 (252)
Q Consensus 181 ~q~~~~~~~~~~~-~~l~~~~~~~gi~v~a-~s 211 (252)
+|+..+-.-.-.+ .++.+.|+++|+.++. ..
T Consensus 333 v~ik~~~iGGItea~~ia~lA~~~Gi~~vv~h~ 365 (425)
T TIGR01060 333 ILIKPNQIGTLTETLDAVELAKKAGYTAVISHR 365 (425)
T ss_pred EEecccccCCHHHHHHHHHHHHHcCCcEEEecC
Confidence 9998876553222 7799999999998554 44
No 72
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=72.80 E-value=10 Score=33.90 Aligned_cols=100 Identities=11% Similarity=0.025 Sum_probs=59.0
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEccCCCCC---CCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhcCCceEE
Q 025500 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS---VPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAV 181 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~---~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~ 181 (252)
++.+ -+-.+-+.|.++|+++|++-..-+|..- .+.+++++.+. +...++..++. .+...++++.+.. .+.+
T Consensus 65 ~s~e-~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~---~~~~~~~~~l~-~n~~die~A~~~g-~~~v 138 (347)
T PLN02746 65 VPTS-VKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVR---NLEGARFPVLT-PNLKGFEAAIAAG-AKEV 138 (347)
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHH---hccCCceeEEc-CCHHHHHHHHHcC-cCEE
Confidence 3443 4456667799999999999866555322 23344555554 33335555554 4788899888753 2233
Q ss_pred eee--cC-------ccccchh-----hhHHHHHHHhCCeEEec
Q 025500 182 QME--WS-------LWTRDIE-----EEIIPLCRELGIGIVPY 210 (252)
Q Consensus 182 q~~--~~-------~~~~~~~-----~~l~~~~~~~gi~v~a~ 210 (252)
.+. .| +.....+ .+++++|+++|+.|.++
T Consensus 139 ~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~ 181 (347)
T PLN02746 139 AVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGY 181 (347)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 332 21 1111111 57899999999998533
No 73
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=72.77 E-value=17 Score=33.04 Aligned_cols=82 Identities=12% Similarity=0.172 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhc-CCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ-LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEAS 117 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~-~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 117 (252)
+.-....++++|++.|++++|||.+..+ . ..++. ..+..+.+..-.|..+ ..+.-.....+++.
T Consensus 77 p~~~~~~i~ka~i~~gv~yvDts~~~~~---~----~~~~~~a~~Agit~v~~~G~dP--------Gi~nv~a~~a~~~~ 141 (389)
T COG1748 77 PPFVDLTILKACIKTGVDYVDTSYYEEP---P----WKLDEEAKKAGITAVLGCGFDP--------GITNVLAAYAAKEL 141 (389)
T ss_pred CchhhHHHHHHHHHhCCCEEEcccCCch---h----hhhhHHHHHcCeEEEcccCcCc--------chHHHHHHHHHHHh
Confidence 3455679999999999999999976642 1 22222 3455566666665432 12332333333332
Q ss_pred HHHcCCCcccEEEccCCCCC
Q 025500 118 LKRLDVDYIDLYYQHRVDTS 137 (252)
Q Consensus 118 L~~Lg~d~iDl~~lh~~~~~ 137 (252)
-+ .++++|+|..+-|+..
T Consensus 142 ~~--~i~si~iy~g~~g~~~ 159 (389)
T COG1748 142 FD--EIESIDIYVGGLGEHG 159 (389)
T ss_pred hc--cccEEEEEEecCCCCC
Confidence 22 5899999999998765
No 74
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=72.63 E-value=59 Score=27.62 Aligned_cols=104 Identities=12% Similarity=0.011 Sum_probs=64.1
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhc--CCceEE
Q 025500 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV--HPITAV 181 (252)
Q Consensus 104 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~ 181 (252)
..+++.+.+..++.++ -|.|+||+-. .|. ..+.++.+..+....++-.=.-|.+-+++++.++++++. +.. +
T Consensus 22 ~~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~-~~~~~ee~~r~v~~i~~~~~~piSIDT~~~~v~e~aL~~~~G~~--i 95 (252)
T cd00740 22 AEDYDEALDVARQQVE-GGAQILDLNV--DYG-GLDGVSAMKWLLNLLATEPTVPLMLDSTNWEVIEAGLKCCQGKC--V 95 (252)
T ss_pred cCCHHHHHHHHHHHHH-CCCCEEEECC--CCC-CCCHHHHHHHHHHHHHHhcCCcEEeeCCcHHHHHHHHhhCCCCc--E
Confidence 3567788888777775 5999999875 233 223333333332223221112388889999999999886 433 3
Q ss_pred eeecCccccc-hhhhHHHHHHHhCCeEEecccC
Q 025500 182 QMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPL 213 (252)
Q Consensus 182 q~~~~~~~~~-~~~~l~~~~~~~gi~v~a~spl 213 (252)
-+..+....+ ....+++.++++|..++....-
T Consensus 96 INsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~ 128 (252)
T cd00740 96 VNSINLEDGEERFLKVARLAKEHGAAVVVLAFD 128 (252)
T ss_pred EEeCCCCCCccccHHHHHHHHHhCCCEEEeccC
Confidence 3344433211 1257889999999999887653
No 75
>PRK05588 histidinol-phosphatase; Provisional
Probab=72.14 E-value=55 Score=27.56 Aligned_cols=105 Identities=18% Similarity=0.234 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHCCCCEEeCcCCcCCC---------cHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHH
Q 025500 40 EEDGISMIKHAFSKGITFFDTADVYGQN---------ANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYV 110 (252)
Q Consensus 40 ~~~~~~~l~~A~~~Gin~~Dta~~Yg~g---------~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i 110 (252)
.....+.+++|.+.|+..+ .++|.... .-+..+. .++..+..+|.+.--++. .++ .
T Consensus 15 ~~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~~-~i~~~~~~~I~~GiE~~~------------~~~-~ 79 (255)
T PRK05588 15 KMKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYFN-KYSKYRNNKLLLGIELGM------------EKD-L 79 (255)
T ss_pred ccCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHHH-HHHHHhcCCcceEEEecc------------cCC-C
Confidence 3457899999999999998 77664110 0112221 112122234444433322 122 3
Q ss_pred HHHHHHHHHHcCCCcccEEEccCCCCCC----------CHHH----HHHHHHHHHH-cCCccEEE
Q 025500 111 RSCCEASLKRLDVDYIDLYYQHRVDTSV----------PIEE----TIGEMKKLVE-EGKIKYIG 160 (252)
Q Consensus 111 ~~~~~~sL~~Lg~d~iDl~~lh~~~~~~----------~~~~----~~~~L~~l~~-~G~ir~iG 160 (252)
.+.+++.|++...|++ +..+|+.+... +.++ .++.+.++++ .+.+..||
T Consensus 80 ~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvlg 143 (255)
T PRK05588 80 IEENKELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSLG 143 (255)
T ss_pred HHHHHHHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 4566778887777776 78889854211 2222 3466777666 45555444
No 76
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=72.10 E-value=59 Score=27.54 Aligned_cols=98 Identities=17% Similarity=0.155 Sum_probs=61.1
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcC-CccEEEccCCCHHHHHHHhhcCCceEEe
Q 025500 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSEASPGTIRRAHAVHPITAVQ 182 (252)
Q Consensus 104 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G-~ir~iGvs~~~~~~l~~~~~~~~~~~~q 182 (252)
.++.+... .+-+.|.++|+++|++-+ |... +.-++.++++.+.+ .++..+.+..+.+.++.+.+. .++.+.
T Consensus 16 ~~~~~~k~-~i~~~L~~~Gv~~iE~g~---p~~~---~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~-g~~~i~ 87 (259)
T cd07939 16 AFSREEKL-AIARALDEAGVDEIEVGI---PAMG---EEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRC-GVTAVH 87 (259)
T ss_pred CCCHHHHH-HHHHHHHHcCCCEEEEec---CCCC---HHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhC-CcCEEE
Confidence 34555544 555669999999999963 3211 23356677777643 477777877788888887764 234444
Q ss_pred eecCcccc--------c------hhhhHHHHHHHhCCeEEe
Q 025500 183 MEWSLWTR--------D------IEEEIIPLCRELGIGIVP 209 (252)
Q Consensus 183 ~~~~~~~~--------~------~~~~l~~~~~~~gi~v~a 209 (252)
+-++.-+. . .-.+.+++|+++|+.|..
T Consensus 88 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~ 128 (259)
T cd07939 88 ISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSV 128 (259)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 43322211 0 115688899999997653
No 77
>smart00642 Aamy Alpha-amylase domain.
Probab=71.91 E-value=6.9 Score=31.01 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=18.1
Q ss_pred hhHHHHHHHhCCeEEecccCc
Q 025500 194 EEIIPLCRELGIGIVPYSPLG 214 (252)
Q Consensus 194 ~~l~~~~~~~gi~v~a~spl~ 214 (252)
+.+++.|+++||.|+.=-++.
T Consensus 73 ~~lv~~~h~~Gi~vilD~V~N 93 (166)
T smart00642 73 KELVDAAHARGIKVILDVVIN 93 (166)
T ss_pred HHHHHHHHHCCCEEEEEECCC
Confidence 889999999999999766664
No 78
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=71.75 E-value=26 Score=29.02 Aligned_cols=97 Identities=20% Similarity=0.176 Sum_probs=56.8
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhh---cCCceEE
Q 025500 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHA---VHPITAV 181 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~---~~~~~~~ 181 (252)
++.+.. ..+-+.|.++|+++|++- .|.......+.++.+.+.... .+-.+++-.....++.+.+ ....+.+
T Consensus 11 ~~~~~k-~~i~~~L~~~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~i 84 (237)
T PF00682_consen 11 FSTEEK-LEIAKALDEAGVDYIEVG---FPFASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDII 84 (237)
T ss_dssp --HHHH-HHHHHHHHHHTTSEEEEE---HCTSSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSEE
T ss_pred cCHHHH-HHHHHHHHHhCCCEEEEc---ccccCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCEE
Confidence 344444 455567999999999998 332222233455555555555 5555666667776666443 2344455
Q ss_pred eeecCccc--------------cchhhhHHHHHHHhCCeE
Q 025500 182 QMEWSLWT--------------RDIEEEIIPLCRELGIGI 207 (252)
Q Consensus 182 q~~~~~~~--------------~~~~~~l~~~~~~~gi~v 207 (252)
.+..+..+ -..-.+.+++++++|+.+
T Consensus 85 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 85 RIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 44433322 111267899999999999
No 79
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=71.28 E-value=66 Score=27.57 Aligned_cols=150 Identities=11% Similarity=0.100 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHH--HHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHHH
Q 025500 41 EDGISMIKHAFSKGITFFDTADVYGQNANEVLLG--KALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASL 118 (252)
Q Consensus 41 ~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig--~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 118 (252)
+...+.++..-+.|+.+|..++.-+.+..+..+. +.|+. ...+-....+. -.+.++..+...+...
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~--~~g~~~i~Hlt---------~r~~n~~~l~~~L~~~- 82 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKK--ETGIPTVPHLT---------CIGATREEIREILREY- 82 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHH--hcCCCeeEEee---------ecCCCHHHHHHHHHHH-
Confidence 5566666776677899999987665433444443 22231 11111111111 1124577777777754
Q ss_pred HHcCCCcccEEEc-cCCCC------CCCHHHHHHHHHHHHHcCCccEEEccCCCH---------HHHHHHhhc----CCc
Q 025500 119 KRLDVDYIDLYYQ-HRVDT------SVPIEETIGEMKKLVEEGKIKYIGLSEASP---------GTIRRAHAV----HPI 178 (252)
Q Consensus 119 ~~Lg~d~iDl~~l-h~~~~------~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~---------~~l~~~~~~----~~~ 178 (252)
..+|++ +++.| -.+.. ......+.+-++.+++..---+||+..++. +.++.+.++ ..+
T Consensus 83 ~~~Gi~--nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f 160 (272)
T TIGR00676 83 RELGIR--HILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADY 160 (272)
T ss_pred HHCCCC--EEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCe
Confidence 888864 33433 23321 112234455455555542235788776432 234444433 235
Q ss_pred eEEeeecCccccchhhhHHHHHHHhCCeE
Q 025500 179 TAVQMEWSLWTRDIEEEIIPLCRELGIGI 207 (252)
Q Consensus 179 ~~~q~~~~~~~~~~~~~l~~~~~~~gi~v 207 (252)
-+-|.-|+. ....++++.|++.|+.+
T Consensus 161 ~iTQ~~fd~---~~~~~~~~~~~~~gi~~ 186 (272)
T TIGR00676 161 AITQLFFDN---DDYYRFVDRCRAAGIDV 186 (272)
T ss_pred EeeccccCH---HHHHHHHHHHHHcCCCC
Confidence 455554443 32367889999998765
No 80
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=71.14 E-value=62 Score=27.75 Aligned_cols=110 Identities=5% Similarity=-0.121 Sum_probs=65.6
Q ss_pred ceeecccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhcCCCCCEEEEeccCccCCCCccc
Q 025500 22 KLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGV 101 (252)
Q Consensus 22 ~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~ 101 (252)
.||.+.|....-.+...+++...+-.-+.+...+|.++.-..|=.-.+++.+-+|.+ ...+++..+.|+...-..
T Consensus 4 ~IG~sGW~~~~w~~~~yp~~~~~~~~L~~y~~~f~~VEiN~TFYa~p~~~t~~~W~~-~~p~~FrFsvK~~~~iTH---- 78 (263)
T COG1801 4 YIGTSGWSYPDWEGLFYPEGLKKKEFLAYYASHFNTVEINSTFYAPPSPETVLRWAE-ETPDDFRFSVKAPRAITH---- 78 (263)
T ss_pred EEeecCCCcccccccccCcccchhhHHHHHhccCCEEEECCcccCCCCHHHHHHHHH-hCCCCeEEEEEecccccc----
Confidence 456666655431121123333334334455556887775444433357888888988 588999999999764321
Q ss_pred ccCCCh---HHHHHHHHHHHHHcCCCcccEEEccCCCCCC
Q 025500 102 IVKGAP---DYVRSCCEASLKRLDVDYIDLYYQHRVDTSV 138 (252)
Q Consensus 102 ~~~~~~---~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~ 138 (252)
..... ..+.+.+.+.++.||. ++..+++.-|..-.
T Consensus 79 -~~~l~~~~~~~~~~~~~~~~~L~~-klg~il~Q~Ppsf~ 116 (263)
T COG1801 79 -QRRLKECDFELWEFFLEPLAPLGE-RLGPILFQLPPSFK 116 (263)
T ss_pred -hhhhccchHHHHHHHHHHHHhhhc-ccceEEEecCCccc
Confidence 11112 3444555555667774 89999999997653
No 81
>PRK06740 histidinol-phosphatase; Validated
Probab=71.13 E-value=75 Score=28.17 Aligned_cols=25 Identities=20% Similarity=0.086 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHCCCCEEeCcCCc
Q 025500 40 EEDGISMIKHAFSKGITFFDTADVY 64 (252)
Q Consensus 40 ~~~~~~~l~~A~~~Gin~~Dta~~Y 64 (252)
.......+++|++.|+..|=-++|.
T Consensus 60 ~~~~e~yv~~Ai~~G~~~ig~SdH~ 84 (331)
T PRK06740 60 TKWIDLYLEEALRKGIKEVGIVDHL 84 (331)
T ss_pred cchHHHHHHHHHHCCCcEEEECCCC
Confidence 4568999999999999977766663
No 82
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=70.92 E-value=63 Score=28.73 Aligned_cols=102 Identities=19% Similarity=0.184 Sum_probs=58.8
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEcc---------CCCCCCCHHHHHHHHHHHHHc-CCccEEEccC---CCHHHHH
Q 025500 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQH---------RVDTSVPIEETIGEMKKLVEE-GKIKYIGLSE---ASPGTIR 170 (252)
Q Consensus 104 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh---------~~~~~~~~~~~~~~L~~l~~~-G~ir~iGvs~---~~~~~l~ 170 (252)
.++.+.+. .+-+.|.+.|+++|.+-... .+.. .+ .++.++.+++. ...+...+.. .+.+.++
T Consensus 21 ~f~~~~~~-~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~-~~---~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~ 95 (337)
T PRK08195 21 QYTLEQVR-AIARALDAAGVPVIEVTHGDGLGGSSFNYGFGA-HT---DEEYIEAAAEVVKQAKIAALLLPGIGTVDDLK 95 (337)
T ss_pred ccCHHHHH-HHHHHHHHcCCCEEEeecCCCCCCccccCCCCC-CC---HHHHHHHHHHhCCCCEEEEEeccCcccHHHHH
Confidence 45666655 45566999999999996321 1111 12 34444554332 3355444332 3567777
Q ss_pred HHhhcCCceEEeeecCccccchhhhHHHHHHHhCCeEEecc
Q 025500 171 RAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYS 211 (252)
Q Consensus 171 ~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~s 211 (252)
.+.+. .++.+.+-.+.-+.+.....+++++++|+.+..+-
T Consensus 96 ~a~~~-gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l 135 (337)
T PRK08195 96 MAYDA-GVRVVRVATHCTEADVSEQHIGLARELGMDTVGFL 135 (337)
T ss_pred HHHHc-CCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEE
Confidence 77664 34555554444333333778999999998877653
No 83
>PLN02681 proline dehydrogenase
Probab=70.50 E-value=93 Score=28.99 Aligned_cols=162 Identities=14% Similarity=0.081 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHCCCC-EEeCcCCcCCCcHHHHHHHHHhcCC----CCCEEEEeccCccCCCCcccccCCChHHHHHHHHH
Q 025500 42 DGISMIKHAFSKGIT-FFDTADVYGQNANEVLLGKALKQLP----REKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEA 116 (252)
Q Consensus 42 ~~~~~l~~A~~~Gin-~~Dta~~Yg~g~se~~ig~~l~~~~----R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (252)
...++++.|.+.|++ +||.=+.|-...-..+.-+..+... +.-|+++-.....+ +++.+...++.
T Consensus 221 rl~~i~~~A~~~gv~l~IDAE~s~~q~aid~l~~~l~~~yN~~~~~~~V~~T~QaYLk~----------t~~~l~~~l~~ 290 (455)
T PLN02681 221 RLQKLCERAAQLGVPLLIDAEYTSLQPAIDYITYDLAREFNKGKDRPIVYGTYQAYLKD----------ARERLRLDLER 290 (455)
T ss_pred HHHHHHHHHHHCCCEEEEeCCcccchhHHHHHHHHHHHHhccccCCCcEEEEEeCcccc----------CHHHHHHHHHH
Confidence 467889999999999 6886554432222333333333322 34566666665443 56777777766
Q ss_pred HHHH---cCC-----CcccE-----EEccCCCCCC----CHHHHHH-HHHHHHH---cCCccEEEccCCCHHHHHHHhhc
Q 025500 117 SLKR---LDV-----DYIDL-----YYQHRVDTSV----PIEETIG-EMKKLVE---EGKIKYIGLSEASPGTIRRAHAV 175 (252)
Q Consensus 117 sL~~---Lg~-----d~iDl-----~~lh~~~~~~----~~~~~~~-~L~~l~~---~G~ir~iGvs~~~~~~l~~~~~~ 175 (252)
+.+. +|+ -|+|- -...||+.-. +.+..++ .++.+.+ .+. .++.+.+|+.+.+..+.+.
T Consensus 291 a~~~g~~~gvKLVRGAY~e~E~~~a~~~g~~~pi~~~k~~Td~~Y~~~~~~lL~~~~~~~-~~~~vATHN~~Si~~a~~~ 369 (455)
T PLN02681 291 SEREGVPLGAKLVRGAYLSLERRLAASLGVPSPVHDTIQDTHACYNRCAEFLLEKASNGD-GEVMLATHNVESGELAAAK 369 (455)
T ss_pred HHhcCCCcceEEEecCCcchhhhhHHhcCCCCCCcCCHHHHHHHHHHHHHHHhhhhccCC-eeeEEecCCHHHHHHHHHH
Confidence 6442 222 22221 1112222111 1222232 3333333 244 4889999999876666443
Q ss_pred -----CCceEEeeecCccccchhhhHHHHHHHhCCeEEecccCcc
Q 025500 176 -----HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGR 215 (252)
Q Consensus 176 -----~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~ 215 (252)
.+..-..++|-.+..- .+.+-....+.|..|.-|-|+|.
T Consensus 370 ~~~~gi~~~~~~veF~qL~GM-~d~ls~~L~~~G~~V~kYvPyG~ 413 (455)
T PLN02681 370 MNELGLHKGDPRVQFAQLLGM-SDNLSFGLGNAGFRVSKYLPYGP 413 (455)
T ss_pred HHHcCCCCCCCCEEEeccCCC-CHHHHHHHHhcCCCEEEEeeccC
Confidence 1111112333333321 14455556677999999999984
No 84
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=70.08 E-value=77 Score=27.89 Aligned_cols=115 Identities=14% Similarity=0.168 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEeCcCCcCCC----cHHHHHHHHHhcCC-CCCEEEEeccCccCCCCcccccCCChHHHHH
Q 025500 38 VSEEDGISMIKHAFSKGITFFDTADVYGQN----ANEVLLGKALKQLP-REKIQVATKFGIAGIGVAGVIVKGAPDYVRS 112 (252)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g----~se~~ig~~l~~~~-R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~ 112 (252)
.+.++..++++.+.+.|+..|.-+. |-. .-++++.. +++.. ..++.|+|-.. .+.+
T Consensus 45 ls~eei~~li~~~~~~Gv~~I~~tG--GEPllr~dl~~li~~-i~~~~~l~~i~itTNG~----------------ll~~ 105 (329)
T PRK13361 45 LSLEELAWLAQAFTELGVRKIRLTG--GEPLVRRGCDQLVAR-LGKLPGLEELSLTTNGS----------------RLAR 105 (329)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC--cCCCccccHHHHHHH-HHhCCCCceEEEEeChh----------------HHHH
Confidence 5789999999999999998887432 110 11222222 22211 22455555421 1222
Q ss_pred HHHHHHHHcCCCcccEEEccCCCC--------CCCHHHHHHHHHHHHHcCC----ccEEEccCCCHHHHHHHh
Q 025500 113 CCEASLKRLDVDYIDLYYQHRVDT--------SVPIEETIGEMKKLVEEGK----IKYIGLSEASPGTIRRAH 173 (252)
Q Consensus 113 ~~~~sL~~Lg~d~iDl~~lh~~~~--------~~~~~~~~~~L~~l~~~G~----ir~iGvs~~~~~~l~~~~ 173 (252)
.-+.|...|++++- +.++..+. ...++.+++.++.+++.|. |..+.+...+.+.+.++.
T Consensus 106 -~~~~L~~aGl~~v~-ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~ 176 (329)
T PRK13361 106 -FAAELADAGLKRLN-ISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLV 176 (329)
T ss_pred -HHHHHHHcCCCeEE-EEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHH
Confidence 33456667777664 35555432 1236788899999988875 223334445555544443
No 85
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=69.95 E-value=70 Score=27.38 Aligned_cols=130 Identities=15% Similarity=0.134 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEeC---cCCcCCC----cHHHHHHHHHhcCCCC-CEEEEeccCccCCCCcccccCCChHHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDT---ADVYGQN----ANEVLLGKALKQLPRE-KIQVATKFGIAGIGVAGVIVKGAPDYV 110 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dt---a~~Yg~g----~se~~ig~~l~~~~R~-~~~i~tK~~~~~~~~~~~~~~~~~~~i 110 (252)
+.++..+..+.+.+.|+..|+. ++....+ ...+.+.+.++.+++. ++-|+.|+.... +.+.+
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~----------~~~~~ 178 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF----------DLEDI 178 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC----------CHHHH
Confidence 5788888999999999999985 3333221 1344555555542222 577888887532 34444
Q ss_pred HHHHHHHHHHcCCCcccEEEccCCCC-------------C---C-----C-HHHHHHHHHHHHHcC--CccEEEccCC-C
Q 025500 111 RSCCEASLKRLDVDYIDLYYQHRVDT-------------S---V-----P-IEETIGEMKKLVEEG--KIKYIGLSEA-S 165 (252)
Q Consensus 111 ~~~~~~sL~~Lg~d~iDl~~lh~~~~-------------~---~-----~-~~~~~~~L~~l~~~G--~ir~iGvs~~-~ 165 (252)
.+.+ +.++..|+|.+.+ |+-.. . . . ..-.++.+.++++.= .+.-||+... +
T Consensus 179 ~~~a-~~l~~~Gad~i~~---~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~ 254 (289)
T cd02810 179 VELA-KAAERAGADGLTA---INTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDS 254 (289)
T ss_pred HHHH-HHHHHcCCCEEEE---EcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCC
Confidence 4433 3567778655544 42110 0 0 0 112467777887764 6888888885 4
Q ss_pred HHHHHHHhhcCCceEEee
Q 025500 166 PGTIRRAHAVHPITAVQM 183 (252)
Q Consensus 166 ~~~l~~~~~~~~~~~~q~ 183 (252)
.+.+.+++..+ .+.+|+
T Consensus 255 ~~da~~~l~~G-Ad~V~v 271 (289)
T cd02810 255 GEDVLEMLMAG-ASAVQV 271 (289)
T ss_pred HHHHHHHHHcC-ccHheE
Confidence 67888877644 566665
No 86
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=69.90 E-value=38 Score=32.79 Aligned_cols=68 Identities=13% Similarity=0.130 Sum_probs=47.8
Q ss_pred HHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEcc-CCCHHHHHHHhhcCCceEEeeec
Q 025500 118 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPGTIRRAHAVHPITAVQMEW 185 (252)
Q Consensus 118 L~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~ 185 (252)
+..+|.|++=+++..........+.....+.+......+..|||- |.+++.+.++.+...++++|+.-
T Consensus 19 a~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLHG 87 (610)
T PRK13803 19 AVDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGIDFVQLHG 87 (610)
T ss_pred HHHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECC
Confidence 456899999998766555555555423333333333357789996 78889999998889999999954
No 87
>PRK02227 hypothetical protein; Provisional
Probab=69.67 E-value=66 Score=27.17 Aligned_cols=152 Identities=15% Similarity=0.188 Sum_probs=86.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCc-CC-C-cHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVY-GQ-N-ANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCE 115 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Y-g~-g-~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (252)
+.+|+. .|++.|..+||.-+-- |. | .....|.+..+. -+.+.-||..++-.+ ..+..+..++
T Consensus 9 ~~eEA~----~Al~~GaDiIDvK~P~~GaLGA~~p~vir~Iv~~-~~~~~pvSAtiGD~p---------~~p~~~~~aa- 73 (238)
T PRK02227 9 NLEEAL----EALAGGADIIDVKNPKEGSLGANFPWVIREIVAA-VPGRKPVSATIGDVP---------YKPGTISLAA- 73 (238)
T ss_pred CHHHHH----HHHhcCCCEEEccCCCCCCCCCCCHHHHHHHHHH-hCCCCCceeeccCCC---------CCchHHHHHH-
Confidence 455554 5678899999975522 21 1 244555544442 334457777777443 3344444333
Q ss_pred HHHHHcCCCcccEEEccCCCCCCCHHHHH----HHHHHHHHcCCccEEEccCC------CHHHHHHHhhcCCceEEeeec
Q 025500 116 ASLKRLDVDYIDLYYQHRVDTSVPIEETI----GEMKKLVEEGKIKYIGLSEA------SPGTIRRAHAVHPITAVQMEW 185 (252)
Q Consensus 116 ~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~----~~L~~l~~~G~ir~iGvs~~------~~~~l~~~~~~~~~~~~q~~~ 185 (252)
...-..|+||+-+=+....+.. ...+.| +++.......++-.++++.+ ++..+-+......|+.++++-
T Consensus 74 ~~~a~~GvDyVKvGl~~~~~~~-~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlDT 152 (238)
T PRK02227 74 LGAAATGADYVKVGLYGGKTAE-EAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLDT 152 (238)
T ss_pred HHHHhhCCCEEEEcCCCCCcHH-HHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCCCEEEEec
Confidence 2344578888887776333221 122333 33444445677888888886 344555555556677777752
Q ss_pred ------Ccccc---chhhhHHHHHHHhCCe
Q 025500 186 ------SLWTR---DIEEEIIPLCRELGIG 206 (252)
Q Consensus 186 ------~~~~~---~~~~~l~~~~~~~gi~ 206 (252)
+++++ ..-.++++.|+++|+-
T Consensus 153 a~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~ 182 (238)
T PRK02227 153 AIKDGKSLFDHMDEEELAEFVAEARSHGLM 182 (238)
T ss_pred ccCCCcchHhhCCHHHHHHHHHHHHHcccH
Confidence 23332 2227788889999974
No 88
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=69.21 E-value=70 Score=28.30 Aligned_cols=94 Identities=15% Similarity=0.186 Sum_probs=55.8
Q ss_pred HHHHHcCCCcccEEEccC-CCC-CCCHHHHHHHHHHHHHc-CCccEEEccCC---CHHHHHHHhhcCC---ceEEeeecC
Q 025500 116 ASLKRLDVDYIDLYYQHR-VDT-SVPIEETIGEMKKLVEE-GKIKYIGLSEA---SPGTIRRAHAVHP---ITAVQMEWS 186 (252)
Q Consensus 116 ~sL~~Lg~d~iDl~~lh~-~~~-~~~~~~~~~~L~~l~~~-G~ir~iGvs~~---~~~~l~~~~~~~~---~~~~q~~~~ 186 (252)
+.-+.+|.|+||+-+.-. |+. ....++....++...+. +.--.|..|.. +++.|+++++... +-++-. +
T Consensus 83 ~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSa--t 160 (319)
T PRK04452 83 KCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSA--E 160 (319)
T ss_pred HHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEEC--C
Confidence 445689999999886543 322 12233344444444333 33333666643 7888998877522 322222 2
Q ss_pred ccccchhhhHHHHHHHhCCeEEecccCc
Q 025500 187 LWTRDIEEEIIPLCRELGIGIVPYSPLG 214 (252)
Q Consensus 187 ~~~~~~~~~l~~~~~~~gi~v~a~spl~ 214 (252)
...-+.+.+.|+++|..|++.+|..
T Consensus 161 ---~en~~~i~~lA~~y~~~Vva~s~~D 185 (319)
T PRK04452 161 ---EDNYKKIAAAAMAYGHAVIAWSPLD 185 (319)
T ss_pred ---HHHHHHHHHHHHHhCCeEEEEcHHH
Confidence 1113789999999999999998653
No 89
>PTZ00081 enolase; Provisional
Probab=69.21 E-value=57 Score=30.22 Aligned_cols=97 Identities=14% Similarity=0.091 Sum_probs=68.5
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcC--CccEEEcc--CCCHHHHHHHhhcCCceE
Q 025500 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGLS--EASPGTIRRAHAVHPITA 180 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G--~ir~iGvs--~~~~~~l~~~~~~~~~~~ 180 (252)
.+++.+.+-+.+.++.++ ++++..|-... -|+.+.+|.++= .+.-+|=- ..+++.+.++++....++
T Consensus 281 ~s~~eli~~~~~~l~~y~-----I~~IEDPl~~~----D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~ 351 (439)
T PTZ00081 281 LTGEELVELYLDLVKKYP-----IVSIEDPFDQD----DWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNA 351 (439)
T ss_pred cCHHHHHHHHHHHHhcCC-----cEEEEcCCCcc----cHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 577777777777777764 67777775543 366666666653 55544432 356889999998888899
Q ss_pred EeeecCccccchh-hhHHHHHHHhCCeEEec
Q 025500 181 VQMEWSLWTRDIE-EEIIPLCRELGIGIVPY 210 (252)
Q Consensus 181 ~q~~~~~~~~~~~-~~l~~~~~~~gi~v~a~ 210 (252)
+|+..|-.-.-.+ .++++.|+++|+.++..
T Consensus 352 i~iKvnqiGGITe~l~~a~lA~~~Gi~~iis 382 (439)
T PTZ00081 352 LLLKVNQIGTVTEAIEAAKLAQKNGWGVMVS 382 (439)
T ss_pred EEeccccccCHHHHHHHHHHHHHcCCcEEEe
Confidence 9998886553222 77999999999998763
No 90
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=69.15 E-value=72 Score=27.22 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCc
Q 025500 39 SEEDGISMIKHAFSKGITFFDTA 61 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta 61 (252)
+.++..++++...++||..|+..
T Consensus 20 s~~~k~~i~~~L~~~Gv~~IEvG 42 (262)
T cd07948 20 DTEDKIEIAKALDAFGVDYIELT 42 (262)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEE
Confidence 77999999999999999999975
No 91
>PRK07328 histidinol-phosphatase; Provisional
Probab=69.14 E-value=72 Score=27.16 Aligned_cols=108 Identities=14% Similarity=0.150 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHCCCCEEeCcCCcCC------------CcHHHHHHHHHhc-------CCCCCEEEEeccCccCCCCcccc
Q 025500 42 DGISMIKHAFSKGITFFDTADVYGQ------------NANEVLLGKALKQ-------LPREKIQVATKFGIAGIGVAGVI 102 (252)
Q Consensus 42 ~~~~~l~~A~~~Gin~~Dta~~Yg~------------g~se~~ig~~l~~-------~~R~~~~i~tK~~~~~~~~~~~~ 102 (252)
...+.+++|.+.|+..+=.++|... +.....+-..+++ ..+=+|.+..-+...
T Consensus 19 ~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y~~i~Il~GiE~~~~-------- 90 (269)
T PRK07328 19 TPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARFPDLYVRLGIEADYH-------- 90 (269)
T ss_pred CHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHcCCCeEEEEEEeccc--------
Confidence 4688999999999997766665321 0111112222222 111133333333221
Q ss_pred cCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCC-------------CCHHHHH----HHHHHHHHcCCccEEEccC
Q 025500 103 VKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-------------VPIEETI----GEMKKLVEEGKIKYIGLSE 163 (252)
Q Consensus 103 ~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-------------~~~~~~~----~~L~~l~~~G~ir~iGvs~ 163 (252)
+ ...+.+++.|++-..|++ +..+|+.+.. .+.++.+ +.+.++.+.|.+..||=-+
T Consensus 91 ----~-~~~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d 162 (269)
T PRK07328 91 ----P-GTEEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHPD 162 (269)
T ss_pred ----C-CcHHHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCcc
Confidence 1 134456667777777776 7788986421 1222333 3577778888887776443
No 92
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=69.07 E-value=39 Score=30.39 Aligned_cols=60 Identities=13% Similarity=0.076 Sum_probs=35.7
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEccCCCCC------------CC-H---HHHH-HHHHHHHHcCCccEEEccCCCH
Q 025500 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS------------VP-I---EETI-GEMKKLVEEGKIKYIGLSEASP 166 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~------------~~-~---~~~~-~~L~~l~~~G~ir~iGvs~~~~ 166 (252)
-+.+.+.+.++..++ |+.+++.+|.+.-.... .+ . .+.+ .+.+.|.+.|- ..+++|||..
T Consensus 167 qt~~~~~~~l~~~~~-l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yeis~fa~ 243 (370)
T PRK06294 167 QSLSDFIVDLHQAIT-LPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGF-TRYELASYAK 243 (370)
T ss_pred CCHHHHHHHHHHHHc-cCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCC-CeeeeeeeeC
Confidence 367778877777664 78888888877532110 01 1 1222 24455666776 4478888763
No 93
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=69.06 E-value=80 Score=27.71 Aligned_cols=115 Identities=14% Similarity=0.184 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEeCcCCcCCC----cHHHHHHHHHhcCC-CCCEEEEeccCccCCCCcccccCCChHHHHH
Q 025500 38 VSEEDGISMIKHAFSKGITFFDTADVYGQN----ANEVLLGKALKQLP-REKIQVATKFGIAGIGVAGVIVKGAPDYVRS 112 (252)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g----~se~~ig~~l~~~~-R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~ 112 (252)
++.++..++++.+.+.|++.|.-+. |.- .-.+++.. ++..+ -+++.|+|-... +.+
T Consensus 43 ls~eei~~~i~~~~~~gv~~V~ltG--GEPll~~~l~~li~~-i~~~~gi~~v~itTNG~l----------------l~~ 103 (334)
T TIGR02666 43 LTFEEIERLVRAFVGLGVRKVRLTG--GEPLLRKDLVELVAR-LAALPGIEDIALTTNGLL----------------LAR 103 (334)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC--ccccccCCHHHHHHH-HHhcCCCCeEEEEeCchh----------------HHH
Confidence 5789999999999999998877432 210 12233332 22222 226777664321 111
Q ss_pred HHHHHHHHcCCCcccEEEccCCCC---------CCCHHHHHHHHHHHHHcCCc----cEEEccCCCHHHHHHHh
Q 025500 113 CCEASLKRLDVDYIDLYYQHRVDT---------SVPIEETIGEMKKLVEEGKI----KYIGLSEASPGTIRRAH 173 (252)
Q Consensus 113 ~~~~sL~~Lg~d~iDl~~lh~~~~---------~~~~~~~~~~L~~l~~~G~i----r~iGvs~~~~~~l~~~~ 173 (252)
.-+.|.+.|++++- +.++..++ ...++.+++.++.+++.|.- ..+-+.+.+.+++.++.
T Consensus 104 -~~~~L~~~gl~~v~-ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~ 175 (334)
T TIGR02666 104 -HAKDLKEAGLKRVN-VSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLA 175 (334)
T ss_pred -HHHHHHHcCCCeEE-EecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHH
Confidence 22446666665443 23444332 12567889999999998852 22333345555554443
No 94
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=68.38 E-value=40 Score=30.67 Aligned_cols=19 Identities=16% Similarity=0.120 Sum_probs=11.2
Q ss_pred HHHHHHHcCCccEEEccCCC
Q 025500 146 EMKKLVEEGKIKYIGLSEAS 165 (252)
Q Consensus 146 ~L~~l~~~G~ir~iGvs~~~ 165 (252)
+.+.|.+.|-. .+++|||.
T Consensus 236 ~~~~L~~~Gy~-~yeisnfa 254 (400)
T PRK07379 236 AQEILTQAGYE-HYEISNYA 254 (400)
T ss_pred HHHHHHHcCCc-eeeeeheE
Confidence 44556666653 46777765
No 95
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=68.24 E-value=30 Score=27.63 Aligned_cols=96 Identities=11% Similarity=0.065 Sum_probs=64.0
Q ss_pred CCCEEeCcC--------CcCCCcHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccc--cCCChHHHHHHHHHHHHHcCC
Q 025500 54 GITFFDTAD--------VYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVI--VKGAPDYVRSCCEASLKRLDV 123 (252)
Q Consensus 54 Gin~~Dta~--------~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~--~~~~~~~i~~~~~~sL~~Lg~ 123 (252)
+|-++||-. .|. |+.+..+-+.|. -.|-++.|.++--..+..++.-. ...++..+.+.+++.|++-+.
T Consensus 80 ~v~fiDTD~itT~~~~~~y~-gr~~P~~~~~i~-~~r~DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~l~~~L~~~~~ 157 (187)
T COG3172 80 KVAFIDTDFLTTQAFCKKYE-GREHPFLQALIA-EYRFDLTLLLEPNTPWVADGLRSLGSSVQRQEFQNLLEQMLEENNI 157 (187)
T ss_pred ceEEEeccHHHHHHHHHHHc-ccCCchHHHHHh-hcccceEEEcCCCCceeCCCccccccHhHHHHHHHHHHHHHHHhCC
Confidence 899999854 232 345556666666 47788888777654444333221 123688899999999999987
Q ss_pred CcccEEEccCCCCCCCHHHHHHHHHHHHHcC
Q 025500 124 DYIDLYYQHRVDTSVPIEETIGEMKKLVEEG 154 (252)
Q Consensus 124 d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G 154 (252)
.| +.|..++.......+.++.+++...+
T Consensus 158 ~~---v~i~~~~y~eR~~~~~~aV~ell~~~ 185 (187)
T COG3172 158 PF---VVIEGEDYLERYLQAVEAVEELLGEK 185 (187)
T ss_pred cE---EEEcCCCHHHHHHHHHHHHHHHHhcc
Confidence 65 44566555555667788888887765
No 96
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=67.66 E-value=87 Score=27.58 Aligned_cols=133 Identities=11% Similarity=0.087 Sum_probs=78.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCc---C-------CcCCC--cHHHHHHHHHhcC-CCCCEEEEeccCccCCCCcccccCC
Q 025500 39 SEEDGISMIKHAFSKGITFFDTA---D-------VYGQN--ANEVLLGKALKQL-PREKIQVATKFGIAGIGVAGVIVKG 105 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta---~-------~Yg~g--~se~~ig~~l~~~-~R~~~~i~tK~~~~~~~~~~~~~~~ 105 (252)
++++..++.+.+.+.|+..||.- + .+|.. ..-+.+.+.++.+ ..-++-|+.|+...+. .
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~--------~ 146 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWA--------P 146 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEcccc--------C
Confidence 67887788888888999999942 2 12210 1233344434331 1114567777753321 0
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCH--HHHHHHHHHHHHcCCccEEEccC-CCHHHHHHHhhcCCceEEe
Q 025500 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPI--EETIGEMKKLVEEGKIKYIGLSE-ASPGTIRRAHAVHPITAVQ 182 (252)
Q Consensus 106 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~--~~~~~~L~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q 182 (252)
+.... ..+-+.++..|. |.+.+|........ ..-|+.+.++++.=.|--||..+ .++++.+++++....+.++
T Consensus 147 ~~~~~-~~~a~~le~~G~---d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVm 222 (321)
T PRK10415 147 EHRNC-VEIAQLAEDCGI---QALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALM 222 (321)
T ss_pred CcchH-HHHHHHHHHhCC---CEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEE
Confidence 11111 133344677775 66677865432111 12478888888887788898888 4788888888765666776
Q ss_pred e
Q 025500 183 M 183 (252)
Q Consensus 183 ~ 183 (252)
+
T Consensus 223 i 223 (321)
T PRK10415 223 I 223 (321)
T ss_pred E
Confidence 6
No 97
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=67.46 E-value=78 Score=28.94 Aligned_cols=96 Identities=16% Similarity=0.141 Sum_probs=65.3
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcC--CccEEEcc--CCCHHHHHHHhhcCCceE
Q 025500 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGLS--EASPGTIRRAHAVHPITA 180 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G--~ir~iGvs--~~~~~~l~~~~~~~~~~~ 180 (252)
++++...+-+.+.++.+ +++++..|-...+ |+.+.+|.++- .+.-+|=- .+++..+.++++....++
T Consensus 261 ~t~~eai~~~~~l~e~~-----~i~~iEdPl~~~D----~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~ 331 (408)
T cd03313 261 LTSEELIDYYKELVKKY-----PIVSIEDPFDEDD----WEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANA 331 (408)
T ss_pred cCHHHHHHHHHHHHHhC-----CcEEEEeCCCCcC----HHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 56666666666665554 5778888865444 56666666662 44433322 247889999988888899
Q ss_pred EeeecCccccchh-hhHHHHHHHhCCeEEe
Q 025500 181 VQMEWSLWTRDIE-EEIIPLCRELGIGIVP 209 (252)
Q Consensus 181 ~q~~~~~~~~~~~-~~l~~~~~~~gi~v~a 209 (252)
+|+..+-.-.-.+ .++...|+++|+.++.
T Consensus 332 v~ik~~~iGGite~~~ia~lA~~~G~~~~~ 361 (408)
T cd03313 332 LLIKVNQIGTLTETIEAIKLAKKNGYGVVV 361 (408)
T ss_pred EEEcccccCCHHHHHHHHHHHHHcCCeEEc
Confidence 9998876543222 7789999999999864
No 98
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=67.40 E-value=77 Score=26.85 Aligned_cols=87 Identities=17% Similarity=0.099 Sum_probs=59.8
Q ss_pred ccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhcCCceEEeeecCccccch-hhhHHHHHHHhC
Q 025500 126 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDI-EEEIIPLCRELG 204 (252)
Q Consensus 126 iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~-~~~l~~~~~~~g 204 (252)
.++.++..|-.. +.++.+.++. .+.--..|=|-++...+.++++....+++|+..+..-.-. -..+.+.|+++|
T Consensus 153 ~~i~~iEqP~~~----~d~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~g 227 (263)
T cd03320 153 GRIEYIEQPLPP----DDLAELRRLA-AGVPIALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARG 227 (263)
T ss_pred cCCceEECCCCh----HHHHHHHHhh-cCCCeeeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcC
Confidence 466667666432 3456666666 4444456666677778888888778899999877644222 278999999999
Q ss_pred CeEEecccCcccc
Q 025500 205 IGIVPYSPLGRGF 217 (252)
Q Consensus 205 i~v~a~spl~~G~ 217 (252)
+.++..+-+..++
T Consensus 228 i~~~~~~~~es~i 240 (263)
T cd03320 228 IPAVVSSALESSI 240 (263)
T ss_pred CCEEEEcchhhHH
Confidence 9998876555443
No 99
>PRK12928 lipoyl synthase; Provisional
Probab=67.17 E-value=40 Score=29.29 Aligned_cols=77 Identities=17% Similarity=0.204 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHHHcC---CccE---EEccCCCHHHHHHHhhc---CCceEEee-ecCc----------cccc-hhhhH
Q 025500 138 VPIEETIGEMKKLVEEG---KIKY---IGLSEASPGTIRRAHAV---HPITAVQM-EWSL----------WTRD-IEEEI 196 (252)
Q Consensus 138 ~~~~~~~~~L~~l~~~G---~ir~---iGvs~~~~~~l~~~~~~---~~~~~~q~-~~~~----------~~~~-~~~~l 196 (252)
...++.++.++.+++.| .+++ +|+ +-+.+++.+.+.. .+++.+.+ +|.. +... ....+
T Consensus 185 ~t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~ 263 (290)
T PRK12928 185 ADYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLPVQRYWTPEEFEAL 263 (290)
T ss_pred CCHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCccCCceeeccCHHHHHHH
Confidence 34677889999999988 3332 477 6666665554432 44555544 3322 1122 22678
Q ss_pred HHHHHHhCCeEEecccCcc
Q 025500 197 IPLCRELGIGIVPYSPLGR 215 (252)
Q Consensus 197 ~~~~~~~gi~v~a~spl~~ 215 (252)
-+.+.+.|...++.+||-.
T Consensus 264 ~~~~~~~g~~~~~~~p~~r 282 (290)
T PRK12928 264 GQIARELGFSHVRSGPLVR 282 (290)
T ss_pred HHHHHHcCCceeEecCccc
Confidence 8888999999999999863
No 100
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=66.69 E-value=39 Score=27.79 Aligned_cols=87 Identities=17% Similarity=0.179 Sum_probs=56.2
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccC-CCHHHHHHHhhcC-CceEEee
Q 025500 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE-ASPGTIRRAHAVH-PITAVQM 183 (252)
Q Consensus 106 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~-~~~~~q~ 183 (252)
+++... .+-+.|-+-|+..+.+-+ +. ....+.+++++++..=-.||..+ .+.++.+++.+.+ .|-
T Consensus 18 ~~e~a~-~~~~al~~~Gi~~iEit~-~t-------~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fi---- 84 (204)
T TIGR01182 18 DVDDAL-PLAKALIEGGLRVLEVTL-RT-------PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFI---- 84 (204)
T ss_pred CHHHHH-HHHHHHHHcCCCEEEEeC-CC-------ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEE----
Confidence 344444 455667777876666554 11 23566666666654335689888 6788888888763 332
Q ss_pred ecCccccchhhhHHHHHHHhCCeEEe
Q 025500 184 EWSLWTRDIEEEIIPLCRELGIGIVP 209 (252)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~~gi~v~a 209 (252)
.++.. ..+++++|+++|+.++.
T Consensus 85 -vsP~~---~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 85 -VSPGL---TPELAKHAQDHGIPIIP 106 (204)
T ss_pred -ECCCC---CHHHHHHHHHcCCcEEC
Confidence 23322 37999999999998775
No 101
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=66.68 E-value=95 Score=27.65 Aligned_cols=97 Identities=16% Similarity=0.101 Sum_probs=56.7
Q ss_pred CCCEEEEeccCccCCCCcccccCCChHHHHHHHHHHHHHcCCCcccEE-EccC-CCCC----CCHHHHHHHHHHHHHcCC
Q 025500 82 REKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLY-YQHR-VDTS----VPIEETIGEMKKLVEEGK 155 (252)
Q Consensus 82 R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~-~lh~-~~~~----~~~~~~~~~L~~l~~~G~ 155 (252)
..++.|..|+.......+ ..+.+... .+-+.|+..|+|++++- -.|. +... .+........+++++.=.
T Consensus 202 G~d~~v~iRi~~~D~~~~----g~~~~e~~-~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~ 276 (353)
T cd02930 202 GEDFIIIYRLSMLDLVEG----GSTWEEVV-ALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVD 276 (353)
T ss_pred CCCceEEEEecccccCCC----CCCHHHHH-HHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCC
Confidence 457788888875432111 13444433 44556788898888872 2231 2111 011112344566777667
Q ss_pred ccEEEccC-CCHHHHHHHhhcCCceEEee
Q 025500 156 IKYIGLSE-ASPGTIRRAHAVHPITAVQM 183 (252)
Q Consensus 156 ir~iGvs~-~~~~~l~~~~~~~~~~~~q~ 183 (252)
+.-++..+ .+++.++++++....+.+++
T Consensus 277 iPVi~~G~i~~~~~a~~~i~~g~~D~V~~ 305 (353)
T cd02930 277 IPVIASNRINTPEVAERLLADGDADMVSM 305 (353)
T ss_pred CCEEEcCCCCCHHHHHHHHHCCCCChhHh
Confidence 77777766 57888999988777777766
No 102
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=66.58 E-value=43 Score=28.34 Aligned_cols=112 Identities=21% Similarity=0.188 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEeCcCCcCC------------------CcHHHHHHHHHhcCCCCCEEEEeccCccCCCCc
Q 025500 38 VSEEDGISMIKHAFSKGITFFDTADVYGQ------------------NANEVLLGKALKQLPREKIQVATKFGIAGIGVA 99 (252)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~------------------g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~ 99 (252)
.+.++..++.++|-+.|+.||=|.-.-.. =.+-.++-+.- .....++++|-..
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A--~tgkPvIlSTG~s------- 123 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIA--KTGKPVILSTGMS------- 123 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHH--TT-S-EEEE-TT--------
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHH--HhCCcEEEECCCC-------
Confidence 47899999999999999999887643220 00112222221 2345577777653
Q ss_pred ccccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCC-CHH-HHHHHHHHHHHcCCccEEEccCCCHHH
Q 025500 100 GVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV-PIE-ETIGEMKKLVEEGKIKYIGLSEASPGT 168 (252)
Q Consensus 100 ~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~-~~~-~~~~~L~~l~~~G~ir~iGvs~~~~~~ 168 (252)
+.+.|.++++...++-+ -++.++|...... +.+ --+..+..|++.=- --||.|+|+...
T Consensus 124 ------tl~EI~~Av~~~~~~~~---~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g~ 184 (241)
T PF03102_consen 124 ------TLEEIERAVEVLREAGN---EDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDGI 184 (241)
T ss_dssp -------HHHHHHHHHHHHHHCT-----EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSSS
T ss_pred ------CHHHHHHHHHHHHhcCC---CCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCCc
Confidence 46677777776645543 5899999985432 222 24666777775533 568999998753
No 103
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=65.87 E-value=16 Score=27.87 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=21.2
Q ss_pred chhhhHHHHHHHhCCeEEecccCc
Q 025500 191 DIEEEIIPLCRELGIGIVPYSPLG 214 (252)
Q Consensus 191 ~~~~~l~~~~~~~gi~v~a~spl~ 214 (252)
+...+++++|++.||.|++|-.+.
T Consensus 44 Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 44 DLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred CHHHHHHHHHHHCCCEEEEEEeee
Confidence 344889999999999999998887
No 104
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=65.69 E-value=84 Score=26.66 Aligned_cols=24 Identities=8% Similarity=0.187 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEeCc
Q 025500 38 VSEEDGISMIKHAFSKGITFFDTA 61 (252)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta 61 (252)
.+.++..++++...++||..++..
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg 42 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVG 42 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 378999999999999999999987
No 105
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=65.00 E-value=1e+02 Score=27.43 Aligned_cols=151 Identities=8% Similarity=0.007 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCCC-cHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQN-ANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEAS 117 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g-~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 117 (252)
++++..+....+.+.|++.|=.-- |.. ......=+++++.-.+++.|..-... .++.+...+ +-+.
T Consensus 138 ~~e~~~~~a~~~~~~Gf~~~Kikv--g~~~~~d~~~v~~vRe~~G~~~~l~vDaN~----------~~~~~~A~~-~~~~ 204 (352)
T cd03328 138 DDDRLREQLSGWVAQGIPRVKMKI--GRDPRRDPDRVAAARRAIGPDAELFVDANG----------AYSRKQALA-LARA 204 (352)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeec--CCCHHHHHHHHHHHHHHcCCCCeEEEECCC----------CCCHHHHHH-HHHH
Confidence 456666777777889999765321 211 11222224455422223333222111 134443332 2233
Q ss_pred HHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHc--CC-ccEEEccCCCHHHHHHHhhcCCceEEeeecCccccch-h
Q 025500 118 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEE--GK-IKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDI-E 193 (252)
Q Consensus 118 L~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~--G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~-~ 193 (252)
|+. +++.++..|-.. +-++.+.+++++ -. --+.|=+-++...+.++++....+++|+...-.-.-. -
T Consensus 205 l~~-----~~~~~~EeP~~~----~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~a~div~~d~~~~GGit~~ 275 (352)
T cd03328 205 FAD-----EGVTWFEEPVSS----DDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQADVTRCGGVTGF 275 (352)
T ss_pred HHH-----hCcchhhCCCCh----hhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcCCCCEEecCccccCCHHHH
Confidence 343 455666666432 346777888877 32 2345666688999999998888999999887644221 2
Q ss_pred hhHHHHHHHhCCeEEecc
Q 025500 194 EEIIPLCRELGIGIVPYS 211 (252)
Q Consensus 194 ~~l~~~~~~~gi~v~a~s 211 (252)
..+.+.|+.+|+.++...
T Consensus 276 ~~ia~~A~a~gi~~~~h~ 293 (352)
T cd03328 276 LQAAALAAAHHVDLSAHC 293 (352)
T ss_pred HHHHHHHHHcCCeeccCc
Confidence 789999999999999764
No 106
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=64.95 E-value=83 Score=27.93 Aligned_cols=102 Identities=19% Similarity=0.195 Sum_probs=56.2
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEc--------cC-CCCCCCHHHHHHHHHHHHHcC-CccEEEccC---CCHHHHH
Q 025500 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQ--------HR-VDTSVPIEETIGEMKKLVEEG-KIKYIGLSE---ASPGTIR 170 (252)
Q Consensus 104 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~l--------h~-~~~~~~~~~~~~~L~~l~~~G-~ir~iGvs~---~~~~~l~ 170 (252)
.++.+.+. .+-+.|.+.|+++|++-.. .. +... + .|+.++++++.- ..+...+.. .+.+.++
T Consensus 20 ~f~~~~~~-~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~-~---~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~ 94 (333)
T TIGR03217 20 QFTIEQVR-AIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAH-T---DLEYIEAAADVVKRAKVAVLLLPGIGTVHDLK 94 (333)
T ss_pred cCCHHHHH-HHHHHHHHcCCCEEEEecCCCCCCccccCCCCCC-C---hHHHHHHHHHhCCCCEEEEEeccCccCHHHHH
Confidence 35565555 5666699999999999522 11 1111 1 233344433322 233332322 3567777
Q ss_pred HHhhcCCceEEeeecCccccchhhhHHHHHHHhCCeEEecc
Q 025500 171 RAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYS 211 (252)
Q Consensus 171 ~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~s 211 (252)
.+.+. .++.+.+-.+.-+-+.....+++++++|..+..+-
T Consensus 95 ~a~~~-gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l 134 (333)
T TIGR03217 95 AAYDA-GARTVRVATHCTEADVSEQHIGMARELGMDTVGFL 134 (333)
T ss_pred HHHHC-CCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEE
Confidence 77764 34555554444333333778888999998776443
No 107
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=64.85 E-value=86 Score=26.51 Aligned_cols=176 Identities=12% Similarity=0.037 Sum_probs=89.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHH-HHHHHHHhcCCCCCEEEEeccCccCCC-----Ccc---c--------
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANE-VLLGKALKQLPREKIQVATKFGIAGIG-----VAG---V-------- 101 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se-~~ig~~l~~~~R~~~~i~tK~~~~~~~-----~~~---~-------- 101 (252)
+.++..++++.-.++||..|++.-.. .+..+ +.+.+..+..++..+..-......... ..+ .
T Consensus 18 ~~~~k~~i~~~L~~~Gv~~iE~g~p~-~~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~~i~i~~~~s~~~ 96 (259)
T cd07939 18 SREEKLAIARALDEAGVDEIEVGIPA-MGEEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCGVTAVHISIPVSDIH 96 (259)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC-CCHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcCEEEEEEecCHHH
Confidence 78999999999999999999986322 12344 444444332222222211111000000 000 0
Q ss_pred ---ccCCChHHHHHHHHHHH---HHcCCCcccEEEccCCCCC-CCHHHHHHHHHHHHHcCCccEEEccC----CCHHHHH
Q 025500 102 ---IVKGAPDYVRSCCEASL---KRLDVDYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLSE----ASPGTIR 170 (252)
Q Consensus 102 ---~~~~~~~~i~~~~~~sL---~~Lg~d~iDl~~lh~~~~~-~~~~~~~~~L~~l~~~G~ir~iGvs~----~~~~~l~ 170 (252)
....+++...+.+.+.+ +..|. ++. +..++.. .+.+.+.+..+++.+.| +..|.+++ ..++++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~i~~a~~~G~-~v~---~~~~~~~~~~~~~~~~~~~~~~~~G-~~~i~l~DT~G~~~P~~v~ 171 (259)
T cd07939 97 LAHKLGKDRAWVLDQLRRLVGRAKDRGL-FVS---VGAEDASRADPDFLIEFAEVAQEAG-ADRLRFADTVGILDPFTTY 171 (259)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHCCC-eEE---EeeccCCCCCHHHHHHHHHHHHHCC-CCEEEeCCCCCCCCHHHHH
Confidence 01122333333333333 33454 232 2333322 34566677777777777 57788776 4566665
Q ss_pred HHhhcC--CceEEeeecCccccchh-hhHHHHHHHhCCeEEecccCccccCCCC
Q 025500 171 RAHAVH--PITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFFGGK 221 (252)
Q Consensus 171 ~~~~~~--~~~~~q~~~~~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~L~~~ 221 (252)
++.... .+. +++.+|.-+..-. ..-.-.|-+.|+..+--+-.+.|.-+|.
T Consensus 172 ~lv~~l~~~~~-~~l~~H~Hn~~Gla~An~laAi~aG~~~vd~s~~G~G~~aGN 224 (259)
T cd07939 172 ELIRRLRAATD-LPLEFHAHNDLGLATANTLAAVRAGATHVSVTVNGLGERAGN 224 (259)
T ss_pred HHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccccccccC
Confidence 554331 122 4556655443211 2222334478999998888888865554
No 108
>PRK05660 HemN family oxidoreductase; Provisional
Probab=64.35 E-value=74 Score=28.67 Aligned_cols=25 Identities=8% Similarity=0.066 Sum_probs=13.2
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEc
Q 025500 106 APDYVRSCCEASLKRLDVDYIDLYYQ 131 (252)
Q Consensus 106 ~~~~i~~~~~~sL~~Lg~d~iDl~~l 131 (252)
+.+.+.+.++..++ ++++++.++.+
T Consensus 172 t~~~~~~~l~~~~~-l~p~~is~y~l 196 (378)
T PRK05660 172 SLEEALDDLRQAIA-LNPPHLSWYQL 196 (378)
T ss_pred CHHHHHHHHHHHHh-cCCCeEEeecc
Confidence 45555555554433 55666655555
No 109
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=63.98 E-value=44 Score=30.97 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=21.9
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEccC
Q 025500 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHR 133 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~ 133 (252)
-+.+.+.+.++..++ ++.+++++|.+.-
T Consensus 227 qT~e~~~~~l~~~~~-l~~~~is~y~L~~ 254 (449)
T PRK09058 227 QTPEIWQQDLAIVRD-LGLDGVDLYALNL 254 (449)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEecccc
Confidence 467788888777664 8999999998864
No 110
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=63.74 E-value=92 Score=26.49 Aligned_cols=100 Identities=19% Similarity=0.166 Sum_probs=63.7
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEc-cCCCCC-CCHHH----HHHHHHHHHHcCCccEEEccCCCHHHHHHHhhcCCc
Q 025500 105 GAPDYVRSCCEASLKRLDVDYIDLYYQ-HRVDTS-VPIEE----TIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPI 178 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~l-h~~~~~-~~~~~----~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 178 (252)
.+++.+.+..++.+ .-|.++||+--. -+|+.. .+.++ +...++.+++.-.+ -|.+-+++++.++++++.+..
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~-plsiDT~~~~vi~~al~~G~~ 97 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV-PISVDTYRAEVARAALEAGAD 97 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCCHHHHHHHHHcCCC
Confidence 45677666666554 678999999422 234322 12232 44455555555223 388899999999999987644
Q ss_pred eEEeeecCccccchhhhHHHHHHHhCCeEEecc
Q 025500 179 TAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYS 211 (252)
Q Consensus 179 ~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~s 211 (252)
-++-+ +... .+++++.++++|..++.+.
T Consensus 98 iINsi--s~~~---~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 98 IINDV--SGGQ---DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred EEEEC--CCCC---CchhHHHHHHcCCcEEEEe
Confidence 34433 3322 2579999999999999854
No 111
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=63.50 E-value=1.1e+02 Score=27.23 Aligned_cols=59 Identities=15% Similarity=0.084 Sum_probs=32.4
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEccC-CCCC--------CCHHHHH-HHHHHHHHcCCccEEEccCCCH
Q 025500 106 APDYVRSCCEASLKRLDVDYIDLYYQHR-VDTS--------VPIEETI-GEMKKLVEEGKIKYIGLSEASP 166 (252)
Q Consensus 106 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~-~~~~--------~~~~~~~-~~L~~l~~~G~ir~iGvs~~~~ 166 (252)
+.+.+.+.++..+ +++.+++.++.+.- |... .+.++.+ .+.+.|.+.|- ..+++|||..
T Consensus 163 t~~~~~~~l~~~~-~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~yeis~fa~ 231 (350)
T PRK08446 163 NKKLLKEELKLAK-ELPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGF-KQYEISNFGK 231 (350)
T ss_pred CHHHHHHHHHHHH-hcCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCC-cEEEeehhhC
Confidence 5666666665544 47777777776643 2110 1112233 33455666674 4678887763
No 112
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=63.27 E-value=40 Score=26.07 Aligned_cols=96 Identities=17% Similarity=0.134 Sum_probs=57.5
Q ss_pred HHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhcCCceEEeeecCccccc
Q 025500 112 SCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRD 191 (252)
Q Consensus 112 ~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~ 191 (252)
+-+.+.|+..|.+-+..=++. ..+++.++. -+.-+.-||+|..+..+...+
T Consensus 30 kvia~~l~d~GfeVi~~g~~~------tp~e~v~aA----~~~dv~vIgvSsl~g~h~~l~------------------- 80 (143)
T COG2185 30 KVIARALADAGFEVINLGLFQ------TPEEAVRAA----VEEDVDVIGVSSLDGGHLTLV------------------- 80 (143)
T ss_pred HHHHHHHHhCCceEEecCCcC------CHHHHHHHH----HhcCCCEEEEEeccchHHHHH-------------------
Confidence 345677888886533222222 224444332 456788999999887665443
Q ss_pred hhhhHHHHHHHhCCeEEecccCccccCCCCCCCCCCCCCccccccCCccccccCcc
Q 025500 192 IEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADSFLVLFSVNVYPHHFVS 247 (252)
Q Consensus 192 ~~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (252)
.++++.|++.|+.=+. .+++|.+.... ...+.++...-+..|++.
T Consensus 81 --~~lve~lre~G~~~i~--v~~GGvip~~d-------~~~l~~~G~~~if~pgt~ 125 (143)
T COG2185 81 --PGLVEALREAGVEDIL--VVVGGVIPPGD-------YQELKEMGVDRIFGPGTP 125 (143)
T ss_pred --HHHHHHHHHhCCcceE--EeecCccCchh-------HHHHHHhCcceeeCCCCC
Confidence 6899999999998776 66667654321 123334555555555543
No 113
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=63.25 E-value=27 Score=32.51 Aligned_cols=65 Identities=17% Similarity=0.210 Sum_probs=45.0
Q ss_pred HHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEcc-CCCHHHHHHHhhcCCceEEeeec
Q 025500 117 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPGTIRRAHAVHPITAVQMEW 185 (252)
Q Consensus 117 sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~ 185 (252)
....+|.|++=+.+........+.+.+-+....+ . ++.+||- |-+++.+.++.+...++++|+.-
T Consensus 272 ~a~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l-~---v~~VgVfv~~~~~~i~~i~~~~~lD~vQLHG 337 (454)
T PRK09427 272 AAYDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAA-P---LRYVGVFRNADIEDIVDIAKQLSLAAVQLHG 337 (454)
T ss_pred HHHhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhC-C---CCEEEEEeCCCHHHHHHHHHHcCCCEEEeCC
Confidence 4567899999887654433444444333222222 2 8899998 78888999988888999999955
No 114
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=63.25 E-value=1.1e+02 Score=27.20 Aligned_cols=178 Identities=15% Similarity=0.075 Sum_probs=83.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEeCc---------CCcCCC--cHHHHHHHHHhcCCCCCEEEEeccCccCCC--------C
Q 025500 38 VSEEDGISMIKHAFSKGITFFDTA---------DVYGQN--ANEVLLGKALKQLPREKIQVATKFGIAGIG--------V 98 (252)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta---------~~Yg~g--~se~~ig~~l~~~~R~~~~i~tK~~~~~~~--------~ 98 (252)
.+.++..++++..-++||..|+.. -.||.. ..++.+..+....++.++....-.+..... .
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~g 101 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGTVDDLKMAYDAG 101 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCcccHHHHHHHHHcC
Confidence 378999999999999999999984 222321 245666555554444444322111110000 0
Q ss_pred ccc----ccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccC----CCHHHHH
Q 025500 99 AGV----IVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE----ASPGTIR 170 (252)
Q Consensus 99 ~~~----~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~----~~~~~l~ 170 (252)
.+. .+....+.+.+.++ ..+.+|. .+-..+...+ ..+.+.+.+..+.+.+.| +..|.+.+ ..++++.
T Consensus 102 vd~iri~~~~~e~~~~~~~i~-~ak~~G~-~v~~~l~~a~--~~~~e~l~~~a~~~~~~G-a~~i~i~DT~G~~~P~~v~ 176 (337)
T PRK08195 102 VRVVRVATHCTEADVSEQHIG-LARELGM-DTVGFLMMSH--MAPPEKLAEQAKLMESYG-AQCVYVVDSAGALLPEDVR 176 (337)
T ss_pred CCEEEEEEecchHHHHHHHHH-HHHHCCC-eEEEEEEecc--CCCHHHHHHHHHHHHhCC-CCEEEeCCCCCCCCHHHHH
Confidence 000 11111222333332 2333453 2333333221 123445555555555555 44566554 3455544
Q ss_pred HHhhc----CCceEEeeecCccccch-hhhHHHHHHHhCCeEEecccCccccCCCC
Q 025500 171 RAHAV----HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRGFFGGK 221 (252)
Q Consensus 171 ~~~~~----~~~~~~q~~~~~~~~~~-~~~l~~~~~~~gi~v~a~spl~~G~L~~~ 221 (252)
++... .++ -+++.+|.-+.-- .-.-.-.|-+.|+..+--+-.+.|.-+|.
T Consensus 177 ~~v~~l~~~l~~-~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~GlG~~aGN 231 (337)
T PRK08195 177 DRVRALRAALKP-DTQVGFHGHNNLGLGVANSLAAVEAGATRIDGSLAGLGAGAGN 231 (337)
T ss_pred HHHHHHHHhcCC-CCeEEEEeCCCcchHHHHHHHHHHhCCCEEEecChhhcccccC
Confidence 44322 111 2345555433311 01222233467888777777776765554
No 115
>PRK00208 thiG thiazole synthase; Reviewed
Probab=63.16 E-value=95 Score=26.42 Aligned_cols=105 Identities=14% Similarity=0.075 Sum_probs=71.9
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEccCCCCC-CCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhcCCceEEe
Q 025500 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQ 182 (252)
Q Consensus 104 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q 182 (252)
+.+.+...+-.+...+.+++++|-|=.+.++... .+..+++++.++|+++|.+- +=+++.++...+++.+.+ +++++
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~v-lpyc~~d~~~ak~l~~~G-~~~vm 149 (250)
T PRK00208 72 CRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLAKRLEEAG-CAAVM 149 (250)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHcC-CCEeC
Confidence 4678888888899999999999999999876543 45789999999999999864 446677777777776653 33332
Q ss_pred eecCcccc--c-hhhhHHHHHHH-hCCeEEec
Q 025500 183 MEWSLWTR--D-IEEEIIPLCRE-LGIGIVPY 210 (252)
Q Consensus 183 ~~~~~~~~--~-~~~~l~~~~~~-~gi~v~a~ 210 (252)
.-=++.-. . ...++++..++ .++.|++-
T Consensus 150 Plg~pIGsg~gi~~~~~i~~i~e~~~vpVIve 181 (250)
T PRK00208 150 PLGAPIGSGLGLLNPYNLRIIIEQADVPVIVD 181 (250)
T ss_pred CCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEe
Confidence 21111111 1 12456666666 47887764
No 116
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=62.52 E-value=54 Score=27.09 Aligned_cols=72 Identities=15% Similarity=0.232 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCC-CcHH---HHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQ-NANE---VLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~-g~se---~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 114 (252)
+.++...+.+.|.++|..|+=|+..|+. |.+. +.+.+.++ ++ +-.|..-. . .+.+...+-+
T Consensus 130 ~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~----~~--v~IKaaGG-------i--rt~~~a~~~i 194 (211)
T TIGR00126 130 TDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVG----DT--IGVKASGG-------V--RTAEDAIAMI 194 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhc----cC--CeEEEeCC-------C--CCHHHHHHHH
Confidence 5678889999999999999999988863 3333 33333333 22 22222111 1 2688888999
Q ss_pred HHHHHHcCCCc
Q 025500 115 EASLKRLDVDY 125 (252)
Q Consensus 115 ~~sL~~Lg~d~ 125 (252)
+.-..|+|+++
T Consensus 195 ~aGa~riGts~ 205 (211)
T TIGR00126 195 EAGASRIGASA 205 (211)
T ss_pred HHhhHHhCcch
Confidence 99999999875
No 117
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=62.43 E-value=1.1e+02 Score=26.77 Aligned_cols=97 Identities=13% Similarity=0.046 Sum_probs=66.1
Q ss_pred HHHHHHcCCC-cccEEEccCCCCCCCHHHHHHHHHHHHHcC-CccEEEccCCCHHHHHHHhhcCCceEEeeecCccccch
Q 025500 115 EASLKRLDVD-YIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDI 192 (252)
Q Consensus 115 ~~sL~~Lg~d-~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G-~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~ 192 (252)
.+.+++|.-+ ..++.++..|-... +.+..+.++- .--+.|=|-++.+.+.++++....+++|+.....-.-.
T Consensus 171 ~~~~~~l~~~~~~~i~~iEqP~~~~------~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~ 244 (307)
T TIGR01927 171 QQFLKALDPNLRGRIAFLEEPLPDA------DEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGALVIKPAIIGSPA 244 (307)
T ss_pred HHHHHhcccccCCCceEEeCCCCCH------HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHH
Confidence 3444455311 15777887775321 5666666653 33355556678888999888777889999887654322
Q ss_pred h-hhHHHHHHHhCCeEEecccCcccc
Q 025500 193 E-EEIIPLCRELGIGIVPYSPLGRGF 217 (252)
Q Consensus 193 ~-~~l~~~~~~~gi~v~a~spl~~G~ 217 (252)
+ ..+.+.|+.+|+.++..+.+..|+
T Consensus 245 ~~~~i~~~a~~~gi~~~~~~~~es~i 270 (307)
T TIGR01927 245 KLRDLAQKAHRLGLQAVFSSVFESSI 270 (307)
T ss_pred HHHHHHHHHHHcCCCEEEECccchHH
Confidence 2 789999999999999888777664
No 118
>PLN02540 methylenetetrahydrofolate reductase
Probab=62.12 E-value=1.5e+02 Score=28.44 Aligned_cols=150 Identities=12% Similarity=0.135 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhcCCCC-CEEEEeccCccCCCCcccccCCChHHHHHHHHHHH
Q 025500 40 EEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPRE-KIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASL 118 (252)
Q Consensus 40 ~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~~~R~-~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 118 (252)
.+...+.+++-.+.|-.|+|.+..-|...++..+.-+.. +.++ .+-..-.+.- .+.+...+...+++.
T Consensus 14 ~~nL~~~~~rl~~~~P~FisVT~gAgGst~~~Tl~la~~-lq~~~Gie~i~HLTC---------rd~n~~~L~~~L~~a- 82 (565)
T PLN02540 14 VDNLFERMDRMVAHGPLFCDITWGAGGSTADLTLDIANR-MQNMICVETMMHLTC---------TNMPVEKIDHALETI- 82 (565)
T ss_pred HHHHHHHHHHHhccCCCEEEeCCCCCCCcHHHHHHHHHH-HHHhcCCCeeEEeee---------cCCCHHHHHHHHHHH-
Confidence 455666777777889999998866654445555543333 2221 1222222211 124567777777666
Q ss_pred HHcCCCcccEEEccC-CCCC--------CCHHHHHHHHHHHHHc-CCccEEEccCCCH------------------HHHH
Q 025500 119 KRLDVDYIDLYYQHR-VDTS--------VPIEETIGEMKKLVEE-GKIKYIGLSEASP------------------GTIR 170 (252)
Q Consensus 119 ~~Lg~d~iDl~~lh~-~~~~--------~~~~~~~~~L~~l~~~-G~ir~iGvs~~~~------------------~~l~ 170 (252)
..+|+.. ++.|.- |... .....+.+-++..++. |..-.|||+.+.. ..++
T Consensus 83 ~~~GIrN--ILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~~~~~~dl~ 160 (565)
T PLN02540 83 KSNGIQN--ILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATPEAYQKDLA 160 (565)
T ss_pred HHCCCCE--EEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCCCCceEEEeCCCCCCCcccccccccCCCChHHHHH
Confidence 8888753 444422 2111 1122344445555554 5567788886532 2344
Q ss_pred HHhhc----CCceEEeeecCccccchhhhHHHHHHHhCC
Q 025500 171 RAHAV----HPITAVQMEWSLWTRDIEEEIIPLCRELGI 205 (252)
Q Consensus 171 ~~~~~----~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi 205 (252)
.+.++ ..|-+-|+-|.. +.....++.|++.||
T Consensus 161 ~Lk~KvdAGAdFiITQlfFD~---d~f~~f~~~~r~~Gi 196 (565)
T PLN02540 161 YLKEKVDAGADLIITQLFYDT---DIFLKFVNDCRQIGI 196 (565)
T ss_pred HHHHHHHcCCCEEeeccccCH---HHHHHHHHHHHhcCC
Confidence 44333 335445554433 323678899999985
No 119
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=62.12 E-value=1.1e+02 Score=26.83 Aligned_cols=86 Identities=9% Similarity=0.018 Sum_probs=62.4
Q ss_pred ccEEEccCCCCCCCHHHHHHHHHHHHHcC-CccEEEccCCCHHHHHHHhhcCCceEEeeecCccccchhhhHHHHHHHhC
Q 025500 126 IDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELG 204 (252)
Q Consensus 126 iDl~~lh~~~~~~~~~~~~~~L~~l~~~G-~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~g 204 (252)
.++.++..|-... .++.+.+++++- .--+.|=|-++...+.++++....+++|+..+..-.- ..+.+.|+.+|
T Consensus 192 ~~i~~iEqP~~~~----~~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~ik~~k~GGi--~~~~~~a~~~g 265 (320)
T PRK02714 192 GKIEFIEQPLPPD----QFDEMLQLSQDYQTPIALDESVANLAQLQQCYQQGWRGIFVIKPAIAGSP--SRLRQFCQQHP 265 (320)
T ss_pred CCccEEECCCCcc----cHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCCCEEEEcchhcCCH--HHHHHHHHHhC
Confidence 5777787775432 366777777654 3445666668888999988877888899988765542 46788999999
Q ss_pred CeEEecccCcccc
Q 025500 205 IGIVPYSPLGRGF 217 (252)
Q Consensus 205 i~v~a~spl~~G~ 217 (252)
+.++..+.+..|+
T Consensus 266 i~~~~~~~~es~i 278 (320)
T PRK02714 266 LDAVFSSVFETAI 278 (320)
T ss_pred CCEEEEechhhHH
Confidence 9999877665553
No 120
>PRK05414 urocanate hydratase; Provisional
Probab=61.79 E-value=25 Score=33.03 Aligned_cols=117 Identities=19% Similarity=0.198 Sum_probs=76.6
Q ss_pred HHHHHHHHCCCCEEe--CcCCcC--------CCcHHHHHHHHHhc---CCCCCEEEEeccCccCCCC------c---ccc
Q 025500 45 SMIKHAFSKGITFFD--TADVYG--------QNANEVLLGKALKQ---LPREKIQVATKFGIAGIGV------A---GVI 102 (252)
Q Consensus 45 ~~l~~A~~~Gin~~D--ta~~Yg--------~g~se~~ig~~l~~---~~R~~~~i~tK~~~~~~~~------~---~~~ 102 (252)
+-+...-+.|+..+- ||.+|- .|.-|.++.-+-+. -.+.++|+++-++-..-.+ + .-.
T Consensus 116 e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~g~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~ 195 (556)
T PRK05414 116 EHFNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFGGDLAGRLVLTAGLGGMGGAQPLAATMAGAVCLA 195 (556)
T ss_pred HHHHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcCCCCceeEEEEecCCccccccHHHHHhcCceEEE
Confidence 344555667887543 444442 14455554433332 3467899999998654221 0 011
Q ss_pred cCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhc
Q 025500 103 VKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV 175 (252)
Q Consensus 103 ~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 175 (252)
.+.++. +.-+|+.+.|+|.+ ..+++++++..++.+++|+..+||+-..-.+.+.++.+.
T Consensus 196 vEvd~~-------ri~kR~~~gyld~~-------~~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~ 254 (556)
T PRK05414 196 VEVDES-------RIDKRLRTGYLDEK-------ADDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRR 254 (556)
T ss_pred EEECHH-------HHHHHHhCCcceeE-------cCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHc
Confidence 223343 34457777887754 346889999999999999999999999888999998876
No 121
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=61.69 E-value=52 Score=30.47 Aligned_cols=60 Identities=20% Similarity=0.213 Sum_probs=37.5
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEc-cCCCCC-----------CCHHH---H-HHHHHHHHHcCCccEEEccCCCH
Q 025500 105 GAPDYVRSCCEASLKRLDVDYIDLYYQ-HRVDTS-----------VPIEE---T-IGEMKKLVEEGKIKYIGLSEASP 166 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~l-h~~~~~-----------~~~~~---~-~~~L~~l~~~G~ir~iGvs~~~~ 166 (252)
-+.+.+.+.++..+ +|+.+++.++.+ |.|... .+.++ . -.+.+.|.+.|- ..+++++|..
T Consensus 216 qt~e~~~~tl~~~~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy-~~~~~~~far 291 (453)
T PRK13347 216 QTVESFRETLDKVI-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGY-VPIGLDHFAL 291 (453)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCC-EEEeccceeC
Confidence 36777877777766 588888888876 333210 01122 2 235566778886 4589999864
No 122
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=61.57 E-value=84 Score=27.83 Aligned_cols=71 Identities=11% Similarity=0.097 Sum_probs=50.9
Q ss_pred HHHHHHHHHcCCcc-EEEccCCCHHHHHHHhhcCCceEEeeecCccccchhhhHHHHHHHhCCeEEecccCccc
Q 025500 144 IGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRG 216 (252)
Q Consensus 144 ~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G 216 (252)
++.+.+++++-.+. +.|=|-++...+.++.+....+++|+..+..-.- .++++.|+++|+.++..+.+..+
T Consensus 173 ~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~~~GGi--t~~lkiA~~~gi~v~v~s~~es~ 244 (327)
T PRK02901 173 VEELAELRRRVGVPIAADESIRRAEDPLRVARAGAADVAVLKVAPLGGV--RAALDIAEQIGLPVVVSSALDTS 244 (327)
T ss_pred HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCCH--HHHHHHHHHcCCcEEEeCCcccH
Confidence 56666666653332 3444456777888888777889999988775542 56788999999999988877655
No 123
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=61.48 E-value=1.1e+02 Score=26.80 Aligned_cols=120 Identities=16% Similarity=0.133 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHHHC-CCCEEeCcCCcCCC--cHHHHHHHHH---hcC-CCCCEEEEeccCccCCCCcccccCCChHHHH
Q 025500 39 SEEDGISMIKHAFSK-GITFFDTADVYGQN--ANEVLLGKAL---KQL-PREKIQVATKFGIAGIGVAGVIVKGAPDYVR 111 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~-Gin~~Dta~~Yg~g--~se~~ig~~l---~~~-~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~ 111 (252)
+.++..++++..-+. ||+-+--+. |+- .+.+.+.+.+ +.. ....+.|.|+..... +..+.
T Consensus 120 ~~~e~~~~i~~i~~~~~I~~VilSG--GDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~-----------p~rit 186 (321)
T TIGR03822 120 SPAELDAAFAYIADHPEIWEVILTG--GDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVAD-----------PARVT 186 (321)
T ss_pred CHHHHHHHHHHHHhCCCccEEEEeC--CCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccC-----------hhhcC
Confidence 557788888877655 887553221 110 1122233333 322 244567888765322 33344
Q ss_pred HHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccE----E--EccCCCHHHHHHHhh
Q 025500 112 SCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKY----I--GLSEASPGTIRRAHA 174 (252)
Q Consensus 112 ~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~----i--Gvs~~~~~~l~~~~~ 174 (252)
+.+-+.|.+.|.. ..+.+|......-.++++++++.|++.|..-. + |+ |.+.+.+.++.+
T Consensus 187 ~ell~~L~~~g~~--v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv-Nd~~~~l~~l~~ 252 (321)
T TIGR03822 187 PALIAALKTSGKT--VYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV-NDDPETLAALMR 252 (321)
T ss_pred HHHHHHHHHcCCc--EEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC-CCCHHHHHHHHH
Confidence 4555567777742 35777775443335789999999999996221 1 43 567666666543
No 124
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=61.45 E-value=91 Score=25.64 Aligned_cols=120 Identities=18% Similarity=0.125 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASL 118 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 118 (252)
++++-.+++..+++.|+.++|.--... .+...-.......+.+++++..-+... .+.+.+.+.+++.
T Consensus 73 ~~~~~~~ll~~~~~~~~d~iDiE~~~~---~~~~~~~~~~~~~~~~iI~S~H~f~~t---------p~~~~l~~~~~~~- 139 (224)
T PF01487_consen 73 SEEEYLELLERAIRLGPDYIDIELDLF---PDDLKSRLAARKGGTKIILSYHDFEKT---------PSWEELIELLEEM- 139 (224)
T ss_dssp -HHHHHHHHHHHHHHTSSEEEEEGGCC---HHHHHHHHHHHHTTSEEEEEEEESS------------THHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcccc---hhHHHHHHHHhhCCCeEEEEeccCCCC---------CCHHHHHHHHHHH-
Confidence 678899999999999999999765532 232222222225778888888744322 2344455555444
Q ss_pred HHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHh
Q 025500 119 KRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAH 173 (252)
Q Consensus 119 ~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~ 173 (252)
..+|.|.+-+..... ...+....++.+.++++.-...-|+++.-....+.++.
T Consensus 140 ~~~gadivKia~~~~--~~~D~~~l~~~~~~~~~~~~~p~i~~~MG~~G~~SRi~ 192 (224)
T PF01487_consen 140 QELGADIVKIAVMAN--SPEDVLRLLRFTKEFREEPDIPVIAISMGELGRISRIL 192 (224)
T ss_dssp HHTT-SEEEEEEE-S--SHHHHHHHHHHHHHHHHHTSSEEEEEEETGGGHHHHHC
T ss_pred HhcCCCeEEEEeccC--CHHHHHHHHHHHHHHhhccCCcEEEEEcCCCchhHHHH
Confidence 488887777766633 22345556677777776544555555544444455544
No 125
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=61.10 E-value=1.3e+02 Score=27.41 Aligned_cols=88 Identities=13% Similarity=0.052 Sum_probs=55.9
Q ss_pred ccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhc-CCceEEeeecCccccchh-hhHHHHHHHh
Q 025500 126 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV-HPITAVQMEWSLWTRDIE-EEIIPLCREL 203 (252)
Q Consensus 126 iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~~-~~l~~~~~~~ 203 (252)
=|-+++..|.. ...+..+..+.+.+.++.+-+...+.+.+++++.. ..+.++..+-|+.-+-.. .++.+.|+++
T Consensus 99 GD~Vvv~~p~Y----~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~ 174 (405)
T PRK08776 99 GDTLVVPHDAY----GGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKV 174 (405)
T ss_pred CCEEEEccCCc----hHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHc
Confidence 36566654432 24455555555555566666666678888877642 334444555555443322 7899999999
Q ss_pred CCeEEecccCcccc
Q 025500 204 GIGIVPYSPLGRGF 217 (252)
Q Consensus 204 gi~v~a~spl~~G~ 217 (252)
|+.++.=..++.+.
T Consensus 175 gi~vIvD~a~a~~~ 188 (405)
T PRK08776 175 GALTVVDNTFLSPA 188 (405)
T ss_pred CCEEEEECCCcccc
Confidence 99999888887554
No 126
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=60.44 E-value=1.1e+02 Score=26.38 Aligned_cols=153 Identities=13% Similarity=0.073 Sum_probs=90.3
Q ss_pred CHHHHHHHHHHHHHCC-CCEEeC---cCCcC-----CCcHHHHHHHHHhcCCC-CCEEEEeccCccCCCCcccccCCChH
Q 025500 39 SEEDGISMIKHAFSKG-ITFFDT---ADVYG-----QNANEVLLGKALKQLPR-EKIQVATKFGIAGIGVAGVIVKGAPD 108 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~G-in~~Dt---a~~Yg-----~g~se~~ig~~l~~~~R-~~~~i~tK~~~~~~~~~~~~~~~~~~ 108 (252)
+.++..+..+.+.++| +..||. +++.. .+...+.+-+.++.+++ -++-|..|+.+.. +
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~------------~ 169 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNV------------T 169 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCc------------h
Confidence 6788888888888998 999986 33221 12345566666655322 2678888986421 1
Q ss_pred HHHHHHHHHHHHcCCCcccEEE-ccCCC--CC---------------CC-HHHHHHHHHHHHHcCCccEEEccCC-CHHH
Q 025500 109 YVRSCCEASLKRLDVDYIDLYY-QHRVD--TS---------------VP-IEETIGEMKKLVEEGKIKYIGLSEA-SPGT 168 (252)
Q Consensus 109 ~i~~~~~~sL~~Lg~d~iDl~~-lh~~~--~~---------------~~-~~~~~~~L~~l~~~G~ir~iGvs~~-~~~~ 168 (252)
.+ ..+-+.++..|+|.+++.- ++... .. .. ..-.++.+.++++.=.+--||+... +.+.
T Consensus 170 ~~-~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~d 248 (301)
T PRK07259 170 DI-VEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAED 248 (301)
T ss_pred hH-HHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHH
Confidence 22 2344567888988776642 11110 00 00 0114667777777656888999985 7888
Q ss_pred HHHHhhcCCceEEeeecCc-cccc----hhhhHHHHHHHhCC
Q 025500 169 IRRAHAVHPITAVQMEWSL-WTRD----IEEEIIPLCRELGI 205 (252)
Q Consensus 169 l~~~~~~~~~~~~q~~~~~-~~~~----~~~~l~~~~~~~gi 205 (252)
..+++..+ .+.+|+-=-+ .++. ...++-+++.++|.
T Consensus 249 a~~~l~aG-Ad~V~igr~ll~~P~~~~~i~~~l~~~~~~~g~ 289 (301)
T PRK07259 249 AIEFIMAG-ASAVQVGTANFYDPYAFPKIIEGLEAYLDKYGI 289 (301)
T ss_pred HHHHHHcC-CCceeEcHHHhcCcHHHHHHHHHHHHHHHHcCC
Confidence 88887654 6777762221 1221 12556666666664
No 127
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=60.43 E-value=1.2e+02 Score=26.76 Aligned_cols=132 Identities=18% Similarity=0.072 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcC----------CcCCC--cHHHHHHHHHhc---CCCCCEEEEeccCccCCCCccccc
Q 025500 39 SEEDGISMIKHAFSKGITFFDTAD----------VYGQN--ANEVLLGKALKQ---LPREKIQVATKFGIAGIGVAGVIV 103 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~----------~Yg~g--~se~~ig~~l~~---~~R~~~~i~tK~~~~~~~~~~~~~ 103 (252)
+++...+.-+.+-+.|+..||--- .+|.. ..-+.+.+.++. .-. ++-|+.|+...+..
T Consensus 77 dp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~-~iPVTVKiRlG~d~------ 149 (323)
T COG0042 77 DPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVG-DIPVTVKIRLGWDD------ 149 (323)
T ss_pred CHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhC-CCCeEEEEecccCc------
Confidence 678889999999999999999522 22211 245566666664 122 78899998765521
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCH--HHHHHHHHHHHHcCC-ccEEEccC-CCHHHHHHHhhcCCce
Q 025500 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPI--EETIGEMKKLVEEGK-IKYIGLSE-ASPGTIRRAHAVHPIT 179 (252)
Q Consensus 104 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~--~~~~~~L~~l~~~G~-ir~iGvs~-~~~~~l~~~~~~~~~~ 179 (252)
.+.....+.+.++..|+ |.+.+|-....... ..-|+.+.++++.=. |--||=.+ ++.+...+.++....+
T Consensus 150 ---~~~~~~~ia~~~~~~g~---~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~D 223 (323)
T COG0042 150 ---DDILALEIARILEDAGA---DALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGAD 223 (323)
T ss_pred ---ccccHHHHHHHHHhcCC---CEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCC
Confidence 12344567777777775 88999987543221 145888888888866 66666665 6888888888765555
Q ss_pred EEee
Q 025500 180 AVQM 183 (252)
Q Consensus 180 ~~q~ 183 (252)
-+++
T Consensus 224 gVMi 227 (323)
T COG0042 224 GVMI 227 (323)
T ss_pred EEEE
Confidence 5554
No 128
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=60.02 E-value=26 Score=32.72 Aligned_cols=117 Identities=21% Similarity=0.235 Sum_probs=76.2
Q ss_pred HHHHHHHHCCCCEEe--CcCCcC--------CCcHHHHHHHHHhc---CCCCCEEEEeccCccCCCC------cc---cc
Q 025500 45 SMIKHAFSKGITFFD--TADVYG--------QNANEVLLGKALKQ---LPREKIQVATKFGIAGIGV------AG---VI 102 (252)
Q Consensus 45 ~~l~~A~~~Gin~~D--ta~~Yg--------~g~se~~ig~~l~~---~~R~~~~i~tK~~~~~~~~------~~---~~ 102 (252)
+-+....+.|+..+- ||.+|- .|.-|.+..-+-+. -.+.++|+++-++-..-.+ ++ -.
T Consensus 107 e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~ 186 (545)
T TIGR01228 107 EHFHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGGSLKGKWVLTAGLGGMGGAQPLAVTMNGGVSIA 186 (545)
T ss_pred HHHHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCCCCceeEEEEeCCCccccccHHHHHHcCceEEE
Confidence 345556667887543 444432 14455554433332 3467899999998654221 00 11
Q ss_pred cCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhc
Q 025500 103 VKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV 175 (252)
Q Consensus 103 ~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 175 (252)
.+.++. +.-+|+.+.|+|.+ ..+++++++..++.+++|+..+||+-..-.+.+.++.+.
T Consensus 187 vEvd~~-------ri~kR~~~gyld~~-------~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r 245 (545)
T TIGR01228 187 VEVDES-------RIDKRLETKYCDEQ-------TDSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKR 245 (545)
T ss_pred EEECHH-------HHHHHHhcCcceeE-------cCCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHc
Confidence 223343 34457777887754 346889999999999999999999999888999998876
No 129
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=59.97 E-value=30 Score=28.43 Aligned_cols=85 Identities=8% Similarity=0.087 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccC-CCHHHHHHHhhcC-CceEEeee
Q 025500 107 PDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE-ASPGTIRRAHAVH-PITAVQME 184 (252)
Q Consensus 107 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~-~~~~~q~~ 184 (252)
++... .+-+.|-+-|+..+.+-+= .| +..+.+++++++..=-.||..+ .+.++++++.+.+ .| -
T Consensus 15 ~~~a~-~ia~al~~gGi~~iEit~~-tp-------~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~F-----i 80 (201)
T PRK06015 15 VEHAV-PLARALAAGGLPAIEITLR-TP-------AALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRF-----I 80 (201)
T ss_pred HHHHH-HHHHHHHHCCCCEEEEeCC-Cc-------cHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCE-----E
Confidence 44433 3444555666655554431 11 2455556665553335588887 6788888887763 23 1
Q ss_pred cCccccchhhhHHHHHHHhCCeEE
Q 025500 185 WSLWTRDIEEEIIPLCRELGIGIV 208 (252)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~~gi~v~ 208 (252)
.++. ...+++++|+++||.++
T Consensus 81 vSP~---~~~~vi~~a~~~~i~~i 101 (201)
T PRK06015 81 VSPG---TTQELLAAANDSDVPLL 101 (201)
T ss_pred ECCC---CCHHHHHHHHHcCCCEe
Confidence 2232 23789999999999877
No 130
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=59.81 E-value=1.4e+02 Score=27.14 Aligned_cols=150 Identities=14% Similarity=0.149 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhc-----CCCCCEEEEeccCccCCCCcccccCCChHHHHHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ-----LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSC 113 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~-----~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~ 113 (252)
...+..++|+.+++.|+- .+.|++..--+.+-.|.++ +..+.++++.-+ ...
T Consensus 39 ~pp~i~~Al~~rvdhGvf----GY~~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~V-------------------Vpg 95 (388)
T COG1168 39 TPPEIIEALRERVDHGVF----GYPYGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGV-------------------VPG 95 (388)
T ss_pred CCHHHHHHHHHHHhcCCC----CCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcc-------------------hHh
Confidence 357889999999999852 2233321112344455553 344455444333 223
Q ss_pred HHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCC-ccEE----EccCC--CHHHHHHHhhcCCceEEeeecC
Q 025500 114 CEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYI----GLSEA--SPGTIRRAHAVHPITAVQMEWS 186 (252)
Q Consensus 114 ~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~-ir~i----Gvs~~--~~~~l~~~~~~~~~~~~q~~~~ 186 (252)
+...++.| ++-=|-+.++.|-.. ++-.+.. ..|+ +-.. .=.-| +.++|+++...... ...+-||
T Consensus 96 i~~~I~~~-T~~gd~Vvi~tPvY~-PF~~~i~------~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~v-kl~iLCn 166 (388)
T COG1168 96 ISLAIRAL-TKPGDGVVIQTPVYP-PFYNAIK------LNGRKVIENPLVEDDGRYEIDFDALEKAFVDERV-KLFILCN 166 (388)
T ss_pred HHHHHHHh-CcCCCeeEecCCCch-HHHHHHh------hcCcEEEeccccccCCcEEecHHHHHHHHhcCCc-cEEEEeC
Confidence 44444444 234577777776331 1111111 1111 0000 00011 44555555443221 1223344
Q ss_pred ccccc------hh-hhHHHHHHHhCCeEEecccCccccCCC
Q 025500 187 LWTRD------IE-EEIIPLCRELGIGIVPYSPLGRGFFGG 220 (252)
Q Consensus 187 ~~~~~------~~-~~l~~~~~~~gi~v~a~spl~~G~L~~ 220 (252)
+-++. .+ ..+.+.|+++|+.||+-.--+-=.|.+
T Consensus 167 PHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g 207 (388)
T COG1168 167 PHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGG 207 (388)
T ss_pred CCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccC
Confidence 43331 12 789999999999999765544334444
No 131
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=59.57 E-value=1.3e+02 Score=26.87 Aligned_cols=151 Identities=10% Similarity=0.024 Sum_probs=87.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCCC--cHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQN--ANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEA 116 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g--~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (252)
+.++..+....+.+.|++.|=.. .++.. ......=+++++.--.++.|..-.. ..++.+... .+-+
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik-~~~~~~~~~di~~i~~vR~~~G~~~~l~vDan----------~~~~~~~A~-~~~~ 210 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLH-PWGPGVVRRDLKACLAVREAVGPDMRLMHDGA----------HWYSRADAL-RLGR 210 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-cCCchhHHHHHHHHHHHHHHhCCCCeEEEECC----------CCcCHHHHH-HHHH
Confidence 56777888888999999988653 12211 1111222344441112333322211 113443332 2222
Q ss_pred HHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEc--cCCC-HHHHHHHhhcCCceEEeeecCccccch-
Q 025500 117 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGL--SEAS-PGTIRRAHAVHPITAVQMEWSLWTRDI- 192 (252)
Q Consensus 117 sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGv--s~~~-~~~l~~~~~~~~~~~~q~~~~~~~~~~- 192 (252)
.|+.+ ++.++..|-.. +.++.+.+++++-.+. |.. +-++ ...+.++++...++++|+..+..-.-.
T Consensus 211 ~l~~~-----~l~~iEeP~~~----~d~~~~~~l~~~~~ip-Ia~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~ 280 (368)
T cd03329 211 ALEEL-----GFFWYEDPLRE----ASISSYRWLAEKLDIP-ILGTEHSRGALESRADWVLAGATDFLRADVNLVGGITG 280 (368)
T ss_pred Hhhhc-----CCCeEeCCCCc----hhHHHHHHHHhcCCCC-EEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHHH
Confidence 33443 45556655432 2357777888875555 433 3366 888888888888999999887654321
Q ss_pred hhhHHHHHHHhCCeEEecc
Q 025500 193 EEEIIPLCRELGIGIVPYS 211 (252)
Q Consensus 193 ~~~l~~~~~~~gi~v~a~s 211 (252)
-..+...|+++|+.++..+
T Consensus 281 ~~~ia~~a~~~gi~~~~h~ 299 (368)
T cd03329 281 AMKTAHLAEAFGLDVELHG 299 (368)
T ss_pred HHHHHHHHHHcCCEEEEEC
Confidence 2789999999999997654
No 132
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=59.56 E-value=29 Score=32.33 Aligned_cols=154 Identities=14% Similarity=0.103 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhc---CCCCCEEEEeccCccCC-----------C---Cc--
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ---LPREKIQVATKFGIAGI-----------G---VA-- 99 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~---~~R~~~~i~tK~~~~~~-----------~---~~-- 99 (252)
....+.+.+..+++.+.--+|+++.-. .-|+.+-.++.. .+.+-.=..|.-+.... . ..
T Consensus 74 ~~~~a~~~~~~~~~~nl~d~~~~p~a~--~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~ 151 (460)
T COG0076 74 VPPVAAELLVSALNKNLGDPDESPAAA--ELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAES 151 (460)
T ss_pred CHHHHHHHHHHHHhhcCCCcccChhHH--HHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcc
Confidence 567888888888888887777765221 245555555554 22222222222221100 0 00
Q ss_pred ----ccccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcC-CccEEEccCCCHHHHHHHhh
Q 025500 100 ----GVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSEASPGTIRRAHA 174 (252)
Q Consensus 100 ----~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G-~ir~iGvs~~~~~~l~~~~~ 174 (252)
+...-.-++..+-+++++++-||++.--+..... +...+..++.+++++....| .|-..|...+.
T Consensus 152 ~~~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~~~~~-~~~id~~~l~~~i~~~t~~g~vV~~aGtT~~G--------- 221 (460)
T COG0076 152 GKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTVPT-DYRIDVDALEEAIDENTIGGVVVGTAGTTDTG--------- 221 (460)
T ss_pred cccCCCCeEEecCcchhHHHHHHHHhCCCceeEEeccC-ccccCHHHHHHHHHhhccCceEEEEecCCCCC---------
Confidence 0001134566778999999999997544444433 44455666666666666665 22222332222
Q ss_pred cCCceEEeeecCccccchhhhHHHHHHHhCCeEEecccCccccC
Q 025500 175 VHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFF 218 (252)
Q Consensus 175 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L 218 (252)
-.+. -+++-+.|+++++.+.+-+.+|+-++
T Consensus 222 ------------~iDd--i~~ia~ia~~~~i~lHVDAA~GG~~~ 251 (460)
T COG0076 222 ------------SIDD--IEELADIAEEYGIWLHVDAAFGGFLL 251 (460)
T ss_pred ------------ccCC--HHHHHHHHHHcCCcEEEEccccceee
Confidence 1111 37899999999999999999996655
No 133
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=59.22 E-value=86 Score=27.66 Aligned_cols=107 Identities=16% Similarity=0.213 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHHHHH
Q 025500 41 EDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKR 120 (252)
Q Consensus 41 ~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~ 120 (252)
...+++++.+-+.|| .+|.|.. +++.+=+++. . -+.-+|++..-... ..++.+.--.++++...++
T Consensus 149 ~~Gk~lV~~~N~LgI-iiDlSH~-----s~kt~~Dvl~-~-s~~PviaSHSN~~a------l~~h~RNl~D~qlkaI~~~ 214 (313)
T COG2355 149 PFGKELVREMNELGI-IIDLSHL-----SDKTFWDVLD-L-SKAPVVASHSNARA------LVDHPRNLSDEQLKAIAET 214 (313)
T ss_pred HHHHHHHHHHHhcCC-EEEeccc-----CCccHHHHHh-c-cCCceEEecCCchh------ccCCCCCCCHHHHHHHHhc
Confidence 567999999999997 7898854 4666767777 3 34445555554433 2334555666777788887
Q ss_pred cCCCcccEEEccCCC-----CCCCHHHHHHHHHHHHHcCCccEEEccC
Q 025500 121 LDVDYIDLYYQHRVD-----TSVPIEETIGEMKKLVEEGKIKYIGLSE 163 (252)
Q Consensus 121 Lg~d~iDl~~lh~~~-----~~~~~~~~~~~L~~l~~~G~ir~iGvs~ 163 (252)
=|+ |.+.++-..- ....+++.++.++.+++.+-+++||+.+
T Consensus 215 gGv--Igv~~~~~fl~~~~~~~atldd~v~hI~h~v~~~G~dhVglGs 260 (313)
T COG2355 215 GGV--IGVNFIPAFLRPGGAARATLDDLVRHIDHFVELVGIDHVGLGS 260 (313)
T ss_pred CCE--EEEEeehhhccCCCCCCCCHHHHHHHHHHHHHhcCcceeEecc
Confidence 776 6666654332 2447899999999999999999999986
No 134
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=59.18 E-value=1.3e+02 Score=26.58 Aligned_cols=126 Identities=12% Similarity=0.070 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEe----------CcCCcCCC--cHHHHHHHHHhcCC-CCCEEEEeccCccCCCCcccccCC
Q 025500 39 SEEDGISMIKHAFSKGITFFD----------TADVYGQN--ANEVLLGKALKQLP-REKIQVATKFGIAGIGVAGVIVKG 105 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~D----------ta~~Yg~g--~se~~ig~~l~~~~-R~~~~i~tK~~~~~~~~~~~~~~~ 105 (252)
++++..++.+.+.+.|+..|| +...||.. ..-+.+.+.++.+. .-++-|+.|+...... ..
T Consensus 65 ~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~------~~ 138 (318)
T TIGR00742 65 DPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDP------LD 138 (318)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCC------cc
Confidence 778888888888889999999 33345532 12334444444421 2246788888654311 01
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEccCCCC-CCCH---------HHHHHHHHHHHHcC-CccEEEccC-CCHHHHHHHh
Q 025500 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDT-SVPI---------EETIGEMKKLVEEG-KIKYIGLSE-ASPGTIRRAH 173 (252)
Q Consensus 106 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~-~~~~---------~~~~~~L~~l~~~G-~ir~iGvs~-~~~~~l~~~~ 173 (252)
+.+... .+-+.++..| +|.+.+|--.. .... .--|+...++++.- .|--||..+ ++.++..+.+
T Consensus 139 ~~~~~~-~~~~~l~~~G---~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l 214 (318)
T TIGR00742 139 SYEFLC-DFVEIVSGKG---CQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHL 214 (318)
T ss_pred hHHHHH-HHHHHHHHcC---CCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHH
Confidence 222222 3444556666 57788887642 1000 11477788888765 688888777 6677777766
Q ss_pred h
Q 025500 174 A 174 (252)
Q Consensus 174 ~ 174 (252)
.
T Consensus 215 ~ 215 (318)
T TIGR00742 215 S 215 (318)
T ss_pred h
Confidence 4
No 135
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=59.04 E-value=38 Score=27.88 Aligned_cols=53 Identities=21% Similarity=0.285 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCC
Q 025500 107 PDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS 165 (252)
Q Consensus 107 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~ 165 (252)
...+.+.+++.++.+|.+ +.++ .+...+.+...+.++++.++| +..|=++..+
T Consensus 13 ~~~~~~g~~~~a~~~g~~-~~~~----~~~~~d~~~q~~~i~~~i~~~-~d~Iiv~~~~ 65 (257)
T PF13407_consen 13 WQQVIKGAKAAAKELGYE-VEIV----FDAQNDPEEQIEQIEQAISQG-VDGIIVSPVD 65 (257)
T ss_dssp HHHHHHHHHHHHHHHTCE-EEEE----EESTTTHHHHHHHHHHHHHTT-ESEEEEESSS
T ss_pred HHHHHHHHHHHHHHcCCE-EEEe----CCCCCCHHHHHHHHHHHHHhc-CCEEEecCCC
Confidence 456788899999999873 3333 333445567788888888887 7766665443
No 136
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=58.57 E-value=1.3e+02 Score=26.46 Aligned_cols=95 Identities=16% Similarity=0.242 Sum_probs=64.5
Q ss_pred HHHHHHcCCCcccEEEccCCCC-----CCCHHHHHHHHHHHHHcCCccE-EEccC---CCHHHHHHHhhcCC-ceEEeee
Q 025500 115 EASLKRLDVDYIDLYYQHRVDT-----SVPIEETIGEMKKLVEEGKIKY-IGLSE---ASPGTIRRAHAVHP-ITAVQME 184 (252)
Q Consensus 115 ~~sL~~Lg~d~iDl~~lh~~~~-----~~~~~~~~~~L~~l~~~G~ir~-iGvs~---~~~~~l~~~~~~~~-~~~~q~~ 184 (252)
+...+++|. |++-+|-... +.+..++.+.|+++.++=+|-- ||=|+ -+++.++++.+... -.|.-..
T Consensus 157 rk~Vk~fga---dmvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaS 233 (403)
T COG2069 157 RKCVKKFGA---DMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLAS 233 (403)
T ss_pred HHHHHHhCC---ceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEeec
Confidence 345567775 6666666533 2457789999999988877654 56666 46788988877632 2233333
Q ss_pred cCccccchhhhHHHHHHHhCCeEEecccCc
Q 025500 185 WSLWTRDIEEEIIPLCRELGIGIVPYSPLG 214 (252)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~~gi~v~a~spl~ 214 (252)
.|+-.. .+.+.++|.++|=.|++|+++.
T Consensus 234 anldlD--y~~ia~AA~ky~H~VLswt~~D 261 (403)
T COG2069 234 ANLDLD--YERIAEAALKYDHVVLSWTQMD 261 (403)
T ss_pred cccccC--HHHHHHHHHhcCceEEEeeccC
Confidence 333222 2789999999999999999875
No 137
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=58.12 E-value=53 Score=26.61 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=28.9
Q ss_pred HHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCCHHHH
Q 025500 116 ASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTI 169 (252)
Q Consensus 116 ~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l 169 (252)
+....++ +|.++||..++ . +..+.+.+......++.||++......+
T Consensus 67 ~ia~~~~---~d~Vqlhg~e~---~-~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 67 EIAEELG---LDVVQLHGDES---P-EYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred HHHHhcC---CCEEEECCCCC---H-HHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 3444554 68899998642 1 2344444433346799999998765444
No 138
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=57.94 E-value=1.3e+02 Score=26.31 Aligned_cols=133 Identities=15% Similarity=0.082 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcC---------CcC-CC--cHHHHHHHHHhcC-CCCCEEEEeccCccCCCCcccccCC
Q 025500 39 SEEDGISMIKHAFSKGITFFDTAD---------VYG-QN--ANEVLLGKALKQL-PREKIQVATKFGIAGIGVAGVIVKG 105 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~---------~Yg-~g--~se~~ig~~l~~~-~R~~~~i~tK~~~~~~~~~~~~~~~ 105 (252)
++++..++.+.+.++|+..||.-- .|+ .. ...+.+.+.++.+ .+-.+-|+.|+......
T Consensus 73 ~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~-------- 144 (319)
T TIGR00737 73 DPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDD-------- 144 (319)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCC--------
Confidence 678888999999999999888521 122 10 1234555555542 12236678887532210
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCH--HHHHHHHHHHHHcCCccEEEccC-CCHHHHHHHhhcCCceEEe
Q 025500 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPI--EETIGEMKKLVEEGKIKYIGLSE-ASPGTIRRAHAVHPITAVQ 182 (252)
Q Consensus 106 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~--~~~~~~L~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q 182 (252)
..... ..+-+.|+..|+ |.+.+|........ ...|+.+.++++.=.+.-|+..+ .+.+++.++++....+.++
T Consensus 145 ~~~~~-~~~a~~l~~~G~---d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vm 220 (319)
T TIGR00737 145 AHINA-VEAARIAEDAGA---QAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVM 220 (319)
T ss_pred CcchH-HHHHHHHHHhCC---CEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEE
Confidence 11111 234456777786 45555654221111 23578888888876688888777 5678888888655566666
Q ss_pred e
Q 025500 183 M 183 (252)
Q Consensus 183 ~ 183 (252)
+
T Consensus 221 i 221 (319)
T TIGR00737 221 I 221 (319)
T ss_pred E
Confidence 6
No 139
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=57.55 E-value=1.9e+02 Score=28.05 Aligned_cols=110 Identities=14% Similarity=0.117 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCC-------C---cHHHHHHHHHh---cCCCCCEEEEeccCccCCCCcccccCC
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQ-------N---ANEVLLGKALK---QLPREKIQVATKFGIAGIGVAGVIVKG 105 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~-------g---~se~~ig~~l~---~~~R~~~~i~tK~~~~~~~~~~~~~~~ 105 (252)
+++...++-+..+++|-+.+.|...+.+ | ..+++...+++ +....+++|+.-+++.... ......
T Consensus 41 ~Pe~i~~vH~~yl~AGAdvi~TnTy~as~~~l~~~g~~~~~~~l~~~av~lAr~a~~~~~~VagsiGP~g~~--~~~~~~ 118 (612)
T PRK08645 41 HPELILRIHREYIEAGADVIQTNTFGANRIKLKRYGLEDKVKEINRAAVRLAREAAGDDVYVAGTIGPIGGR--GPLGDI 118 (612)
T ss_pred CHHHHHHHHHHHHHhCCCEEecCcccccHHHHHhcCchHHHHHHHHHHHHHHHHHhcCCCeEEEeCCCCCCC--CCCCCC
Confidence 6788888889999999999998864432 1 13344444443 1121457888888876532 112235
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHc
Q 025500 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEE 153 (252)
Q Consensus 106 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~ 153 (252)
+.+.+.+......+.|.-.-+|++++.-... +.|+..+++.+++.
T Consensus 119 ~~~~~~~~~~~~~~~l~~~gvD~l~~ET~~~---~~Ea~a~~~a~~~~ 163 (612)
T PRK08645 119 SLEEIRREFREQIDALLEEGVDGLLLETFYD---LEELLLALEAAREK 163 (612)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEEccCC---HHHHHHHHHHHHHh
Confidence 6788888888888888666799999977643 33433344444433
No 140
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=56.20 E-value=1.7e+02 Score=27.11 Aligned_cols=157 Identities=13% Similarity=0.074 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHHH-CCCCEEeCcCCcCCCcHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHH
Q 025500 39 SEEDGISMIKHAFS-KGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEAS 117 (252)
Q Consensus 39 ~~~~~~~~l~~A~~-~Gin~~Dta~~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 117 (252)
++++..+....+++ .|++.|=.--.-.++..+...=+++++.- .++.|..-.- ..++.+... +.
T Consensus 180 ~~e~~~~~a~~~~~~~Gf~a~KiKvG~~~~~~Di~~v~avRea~-~d~~L~vDAN----------~~wt~~~Ai----~~ 244 (441)
T TIGR03247 180 TPEAVVRLAEAAYDRYGFRDFKLKGGVLRGEEEIEAVTALAKRF-PQARITLDPN----------GAWSLDEAI----AL 244 (441)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEecCCCChHHHHHHHHHHHHhC-CCCeEEEECC----------CCCCHHHHH----HH
Confidence 45666666666665 59997753211111112222224455422 2333322221 113444322 33
Q ss_pred HHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCcc-EEEccCCCHHHHHHHhhcCCceEEeeecCccccchhhhH
Q 025500 118 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIEEEI 196 (252)
Q Consensus 118 L~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~l 196 (252)
+++|. ++ +.++..|-...+..+-++.+.+++++-.+. ..|=+-++...+.++++...++++|......--.....+
T Consensus 245 ~~~Le-~~--~~~iEePv~~~d~~~~~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~avdi~~~d~~~gGIt~~~kI 321 (441)
T TIGR03247 245 CKDLK-GV--LAYAEDPCGAEQGYSGREVMAEFRRATGLPTATNMIATDWRQMGHALQLQAVDIPLADPHFWTMQGSVRV 321 (441)
T ss_pred HHHhh-hh--hceEeCCCCcccccchHHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhCCCCEEeccCCcchHHHHHHH
Confidence 33342 22 456777754332112367778887765544 345566788899998888888899988642211112789
Q ss_pred HHHHHHhCCeEEecccC
Q 025500 197 IPLCRELGIGIVPYSPL 213 (252)
Q Consensus 197 ~~~~~~~gi~v~a~spl 213 (252)
.+.|+.+|+.+..++.+
T Consensus 322 a~lA~a~Gi~v~~h~~~ 338 (441)
T TIGR03247 322 AQMCHDWGLTWGSHSNN 338 (441)
T ss_pred HHHHHHcCCEEEEeCCc
Confidence 99999999999887643
No 141
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=55.40 E-value=49 Score=27.64 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEeCcCCcCCCc---HHHHHHHHHhc
Q 025500 38 VSEEDGISMIKHAFSKGITFFDTADVYGQNA---NEVLLGKALKQ 79 (252)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~---se~~ig~~l~~ 79 (252)
.+.++..++++.|.+.||+-+=..++|-.|+ .++.|.+.+.+
T Consensus 17 ~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~~ 61 (254)
T COG4464 17 KSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKANQ 61 (254)
T ss_pred CcHHHHHHHHHHHHHcCceEEeecccccCCccCChHHHHHHHHHH
Confidence 4789999999999999999776666665543 45555555543
No 142
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=55.23 E-value=58 Score=29.64 Aligned_cols=68 Identities=19% Similarity=0.120 Sum_probs=51.0
Q ss_pred HHHHHHHHHHcCCc---cEEEccCCCHHHHHHHhhcCCceEEeeecCccccchh-hhHHHHHHHhCCeEEec
Q 025500 143 TIGEMKKLVEEGKI---KYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPY 210 (252)
Q Consensus 143 ~~~~L~~l~~~G~i---r~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~-~~l~~~~~~~gi~v~a~ 210 (252)
-++.+.+|+++-.+ -..|=+.++...+.++++...++++|+...-.-.-.+ ..+.+.|+.+|+.++..
T Consensus 247 d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 247 DYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred cHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 46677778776442 2236677888999999988889999998876543222 78999999999998765
No 143
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=55.11 E-value=87 Score=26.80 Aligned_cols=77 Identities=16% Similarity=0.088 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHCCCCEEeCcCCcCC-CcHHHH---HHHHHhcC-CCCCEEEEeccCccCCCCcccccCCChHHHHHHH
Q 025500 40 EEDGISMIKHAFSKGITFFDTADVYGQ-NANEVL---LGKALKQL-PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (252)
Q Consensus 40 ~~~~~~~l~~A~~~Gin~~Dta~~Yg~-g~se~~---ig~~l~~~-~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 114 (252)
+++..++.+.|.++|..|+=|+-.|+. |...+. +-+.+++. ...+ +.-|..-. . .+.+...+-+
T Consensus 146 ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~~~~~~--vgIKAsGG-------I--rt~~~A~~~i 214 (257)
T PRK05283 146 EALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDMGVAKT--VGFKPAGG-------V--RTAEDAAQYL 214 (257)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhcccCCC--eeEEccCC-------C--CCHHHHHHHH
Confidence 445899999999999999999999874 333333 33333210 0122 22233211 1 3578889999
Q ss_pred HHHHHHcCCCccc
Q 025500 115 EASLKRLDVDYID 127 (252)
Q Consensus 115 ~~sL~~Lg~d~iD 127 (252)
+..-+.||-+|++
T Consensus 215 ~ag~~~lg~~~~~ 227 (257)
T PRK05283 215 ALADEILGADWAD 227 (257)
T ss_pred HHHHHHhChhhcC
Confidence 9999999998865
No 144
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=54.95 E-value=74 Score=24.48 Aligned_cols=63 Identities=11% Similarity=0.190 Sum_probs=44.2
Q ss_pred CCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHHHHHcC--CCcccEEEccCCCCCCCHHHHHHHHHHHHHc
Q 025500 81 PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLD--VDYIDLYYQHRVDTSVPIEETIGEMKKLVEE 153 (252)
Q Consensus 81 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg--~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~ 153 (252)
+|=-+.|+-|++.. ..+..+++.++++++.+. +...|++++.......+.++....|..+.++
T Consensus 46 ~RlG~sVSKKvg~A----------V~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 46 CKVGITVSKKFGKA----------HQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPE 110 (138)
T ss_pred ceEEEEEecccccc----------hhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHH
Confidence 45557787787642 357778888888887663 3568999999987766677776666666544
No 145
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=53.93 E-value=60 Score=29.89 Aligned_cols=89 Identities=15% Similarity=0.210 Sum_probs=57.0
Q ss_pred HHHHcCCCcccEEEccCCCC-CCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhc--------CCceEEeeecCc
Q 025500 117 SLKRLDVDYIDLYYQHRVDT-SVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV--------HPITAVQMEWSL 187 (252)
Q Consensus 117 sL~~Lg~d~iDl~~lh~~~~-~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~--------~~~~~~q~~~~~ 187 (252)
.++.+|++|. ++.-|.. ... ..+-...+-+.|-+.++|..+.+++++++.+.. .||.+|-+ .++
T Consensus 6 f~~~lgiryP---ii~gpMa~Gis---s~eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~ 78 (418)
T cd04742 6 FKEDYGLRYA---YVAGAMARGIA---SAELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSP 78 (418)
T ss_pred HHHHhCCCcc---EECCcccCCCC---CHHHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCC
Confidence 4567777654 3333332 122 223345566889999999999999888776432 25666554 333
Q ss_pred cccchhhhHHHHHHHhCCeEEeccc
Q 025500 188 WTRDIEEEIIPLCRELGIGIVPYSP 212 (252)
Q Consensus 188 ~~~~~~~~l~~~~~~~gi~v~a~sp 212 (252)
-++..+.+.++.|.++||.++..+-
T Consensus 79 ~~~~~e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 79 DEPELEEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred CCchhHHHHHHHHHHcCCCEEEecc
Confidence 3333346799999999999887654
No 146
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=53.93 E-value=38 Score=28.61 Aligned_cols=76 Identities=16% Similarity=0.252 Sum_probs=48.7
Q ss_pred CCCccccceeecccccCCCCCCC--CCHHHHHH----HHHHHHHCCCCEEeCcC---CcCCCcHHHHHHHHHhc------
Q 025500 15 TQGLEVSKLGYGCMNLSGGYSSP--VSEEDGIS----MIKHAFSKGITFFDTAD---VYGQNANEVLLGKALKQ------ 79 (252)
Q Consensus 15 ~~g~~vs~lglG~~~~g~~~~~~--~~~~~~~~----~l~~A~~~Gin~~Dta~---~Yg~g~se~~ig~~l~~------ 79 (252)
.+|+.+|.+||.+-+--. +|+. ...+++.+ .+..|.+.|||.|-.|. .|.. .+++...+++.+
T Consensus 65 etgv~ipSmClSaHRRfP-fGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~-~d~eT~~rFi~g~~~a~~ 142 (287)
T COG3623 65 ETGVRIPSMCLSAHRRFP-FGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEE-ADEETRQRFIEGLKWAVE 142 (287)
T ss_pred HhCCCccchhhhhhccCC-CCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeecc-CCHHHHHHHHHHHHHHHH
Confidence 689999999998764221 3332 22344544 45556677999999885 2333 366666666664
Q ss_pred -CCCCCEEEEeccC
Q 025500 80 -LPREKIQVATKFG 92 (252)
Q Consensus 80 -~~R~~~~i~tK~~ 92 (252)
..+.+|.++.-+.
T Consensus 143 lA~~aqV~lAvEiM 156 (287)
T COG3623 143 LAARAQVMLAVEIM 156 (287)
T ss_pred HHHhhccEEEeeec
Confidence 4577777776664
No 147
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=53.67 E-value=1.7e+02 Score=26.45 Aligned_cols=145 Identities=11% Similarity=-0.030 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCCCc-HHHHHHHHHhc-C-CCCCEEEEeccCccCCCCcccccCCChHHHHHHHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQNA-NEVLLGKALKQ-L-PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCE 115 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~-se~~ig~~l~~-~-~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (252)
+.++..+....+.+.|++.|=.--...+-. ..+.+ +++++ + +.-++.| -... .++.+...
T Consensus 160 ~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~di~~v-~avRe~~G~~~~l~v--DaN~----------~w~~~~A~---- 222 (385)
T cd03326 160 DLGRLRDEMRRYLDRGYTVVKIKIGGAPLDEDLRRI-EAALDVLGDGARLAV--DANG----------RFDLETAI---- 222 (385)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHH-HHHHHhcCCCCeEEE--ECCC----------CCCHHHHH----
Confidence 456677777888899999775421110001 12223 34444 2 2223433 2211 13444322
Q ss_pred HHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCcc-EEEccCCCHHHHHHHhhcCCc----eEEeeecCcccc
Q 025500 116 ASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPGTIRRAHAVHPI----TAVQMEWSLWTR 190 (252)
Q Consensus 116 ~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~----~~~q~~~~~~~~ 190 (252)
+.++.|. .+++.++..|-... -++.+.+|+++..+. +.|=|-++...+.++++.... +++|+..+-.-.
T Consensus 223 ~~~~~l~--~~~~~~iEeP~~~~----d~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~d~~~~GG 296 (385)
T cd03326 223 AYAKALA--PYGLRWYEEPGDPL----DYALQAELADHYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQFDPGLSYG 296 (385)
T ss_pred HHHHHhh--CcCCCEEECCCCcc----CHHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEEeCchhhCC
Confidence 2333332 34677777775432 367778888776554 556666888999998876554 899998775442
Q ss_pred ch-hhhHHHHHHHhCCe
Q 025500 191 DI-EEEIIPLCRELGIG 206 (252)
Q Consensus 191 ~~-~~~l~~~~~~~gi~ 206 (252)
-. -..+.+.|+.+|+.
T Consensus 297 it~~~kia~lA~a~gi~ 313 (385)
T cd03326 297 LPEYLRMLDVLEAHGWS 313 (385)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 21 27899999999998
No 148
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=53.27 E-value=30 Score=28.32 Aligned_cols=81 Identities=19% Similarity=0.196 Sum_probs=45.5
Q ss_pred HHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccC-CCHHHHHHHhhcC-CceEEeeecCcccc
Q 025500 113 CCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE-ASPGTIRRAHAVH-PITAVQMEWSLWTR 190 (252)
Q Consensus 113 ~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~-~~~~~q~~~~~~~~ 190 (252)
.+-+.|-.-|+..+.+-+ -. .. ..+.++.++++--=-.||+.+ .+.++++++.+.+ .|- .++
T Consensus 24 ~~~~al~~gGi~~iEiT~---~t--~~---a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~Fi-----vSP--- 87 (196)
T PF01081_consen 24 PIAEALIEGGIRAIEITL---RT--PN---ALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFI-----VSP--- 87 (196)
T ss_dssp HHHHHHHHTT--EEEEET---TS--TT---HHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEE-----EES---
T ss_pred HHHHHHHHCCCCEEEEec---CC--cc---HHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEE-----ECC---
Confidence 344556666665544433 11 12 334444444332224589888 6788899888764 332 222
Q ss_pred chhhhHHHHHHHhCCeEEe
Q 025500 191 DIEEEIIPLCRELGIGIVP 209 (252)
Q Consensus 191 ~~~~~l~~~~~~~gi~v~a 209 (252)
...++++++|+++|+.++.
T Consensus 88 ~~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 88 GFDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp S--HHHHHHHHHHTSEEEE
T ss_pred CCCHHHHHHHHHcCCcccC
Confidence 2237899999999999884
No 149
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=52.45 E-value=37 Score=30.04 Aligned_cols=94 Identities=20% Similarity=0.258 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhc----CC---CCCEEEEeccCccCCCCcccccCCChHHH
Q 025500 38 VSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ----LP---REKIQVATKFGIAGIGVAGVIVKGAPDYV 110 (252)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~----~~---R~~~~i~tK~~~~~~~~~~~~~~~~~~~i 110 (252)
...++...+++.+.+.|++=|=-+ | .|..+-+-|.+ +. -.++-++|-.. .
T Consensus 43 Ls~eei~~~~~~~~~~Gv~kvRlT---G---GEPllR~dl~eIi~~l~~~~~~~islTTNG~-----------------~ 99 (322)
T COG2896 43 LSLEEIRRLVRAFAELGVEKVRLT---G---GEPLLRKDLDEIIARLARLGIRDLSLTTNGV-----------------L 99 (322)
T ss_pred CCHHHHHHHHHHHHHcCcceEEEe---C---CCchhhcCHHHHHHHHhhcccceEEEecchh-----------------h
Confidence 468999999999999999977733 3 45555555544 22 25566665542 2
Q ss_pred HHHHHHHHHHcCCCcccEEEccCCCCC--------CCHHHHHHHHHHHHHcCC
Q 025500 111 RSCCEASLKRLDVDYIDLYYQHRVDTS--------VPIEETIGEMKKLVEEGK 155 (252)
Q Consensus 111 ~~~~~~sL~~Lg~d~iDl~~lh~~~~~--------~~~~~~~~~L~~l~~~G~ 155 (252)
-.....-|+.-|++++-+ .||..+++ ..+..+++.+++.+++|.
T Consensus 100 L~~~a~~Lk~AGl~rVNV-SLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl 151 (322)
T COG2896 100 LARRAADLKEAGLDRVNV-SLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGL 151 (322)
T ss_pred HHHHHHHHHHcCCcEEEe-ecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Confidence 334445566666655432 33444331 235677888888887775
No 150
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=52.29 E-value=1.5e+02 Score=25.22 Aligned_cols=178 Identities=11% Similarity=0.092 Sum_probs=88.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhc-CCCCCEEEEeccCccCCC-----C----ccc---c--
Q 025500 38 VSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ-LPREKIQVATKFGIAGIG-----V----AGV---I-- 102 (252)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~-~~R~~~~i~tK~~~~~~~-----~----~~~---~-- 102 (252)
.+.++..++++...++||..|+....... ..+...-+.+.. .+..++............ . .+. .
T Consensus 17 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~-~~~~~~~~~l~~~~~~~~~~~l~r~~~~~v~~a~~~~~~~~~~~i~i~~~ 95 (268)
T cd07940 17 LTPEEKLEIARQLDELGVDVIEAGFPAAS-PGDFEAVKRIAREVLNAEICGLARAVKKDIDAAAEALKPAKVDRIHTFIA 95 (268)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCC-HHHHHHHHHHHHhCCCCEEEEEccCCHhhHHHHHHhCCCCCCCEEEEEec
Confidence 37899999999999999999998643311 122222233332 333333332221110000 0 000 0
Q ss_pred ---------cCCChHHHHHHHHHHHH---HcCCCcccEEEccCCCC-CCCHHHHHHHHHHHHHcCCccEEEccCC----C
Q 025500 103 ---------VKGAPDYVRSCCEASLK---RLDVDYIDLYYQHRVDT-SVPIEETIGEMKKLVEEGKIKYIGLSEA----S 165 (252)
Q Consensus 103 ---------~~~~~~~i~~~~~~sL~---~Lg~d~iDl~~lh~~~~-~~~~~~~~~~L~~l~~~G~ir~iGvs~~----~ 165 (252)
...+++...+.+.+..+ .+|. .+. +..++. ..+.+.+.+..+++.+.| +..|.+++. +
T Consensus 96 ~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~-~v~---~~~~~~~~~~~~~~~~~~~~~~~~G-~~~i~l~DT~G~~~ 170 (268)
T cd07940 96 TSDIHLKYKLKKTREEVLERAVEAVEYAKSHGL-DVE---FSAEDATRTDLDFLIEVVEAAIEAG-ATTINIPDTVGYLT 170 (268)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-eEE---EeeecCCCCCHHHHHHHHHHHHHcC-CCEEEECCCCCCCC
Confidence 11222333333333333 3443 222 333332 234556667777777777 677888873 6
Q ss_pred HHHHHHHhhcC--Cce--EEeeecCccccch-hhhHHHHHHHhCCeEEecccCccccCCCC
Q 025500 166 PGTIRRAHAVH--PIT--AVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRGFFGGK 221 (252)
Q Consensus 166 ~~~l~~~~~~~--~~~--~~q~~~~~~~~~~-~~~l~~~~~~~gi~v~a~spl~~G~L~~~ 221 (252)
++++.++.+.. .+. -+.+.+|.-+..- .-.-.-.|-+.|+..+--+-.+.|.-+|.
T Consensus 171 P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi~aG~~~iD~s~~GlG~~aGN 231 (268)
T cd07940 171 PEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVEAGARQVECTINGIGERAGN 231 (268)
T ss_pred HHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHHHHhCCCEEEEEeecccccccc
Confidence 66666554431 111 1455666544421 11222223467999998888887754444
No 151
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=52.23 E-value=1.3e+02 Score=24.57 Aligned_cols=133 Identities=13% Similarity=0.038 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCc----------CCcCCC--cHHHHHHHHHhcCCC-CCEEEEeccCccCCCCcccccCC
Q 025500 39 SEEDGISMIKHAFSKGITFFDTA----------DVYGQN--ANEVLLGKALKQLPR-EKIQVATKFGIAGIGVAGVIVKG 105 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta----------~~Yg~g--~se~~ig~~l~~~~R-~~~~i~tK~~~~~~~~~~~~~~~ 105 (252)
+.++..+..+.+.++|+.-||.- +.||.. ..-+.+-+.++.+.+ -.+-|+.|+...+. .
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~--------~ 136 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWD--------D 136 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccC--------C
Confidence 67888889999999999999852 235421 123334444443211 11456666643220 0
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEccCCCCCC--CHHHHHHHHHHHHHcCCccEEEccCC-CHHHHHHHhhcCCceEEe
Q 025500 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV--PIEETIGEMKKLVEEGKIKYIGLSEA-SPGTIRRAHAVHPITAVQ 182 (252)
Q Consensus 106 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~--~~~~~~~~L~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q 182 (252)
.+... .+-+.|+..|+ |.+.+|...... .-...|+.+.++++.-.+.-++..+. +.+++.++++....+.++
T Consensus 137 -~~~~~-~~~~~l~~~Gv---d~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~ 211 (231)
T cd02801 137 -EEETL-ELAKALEDAGA---SALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVM 211 (231)
T ss_pred -chHHH-HHHHHHHHhCC---CEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEE
Confidence 11222 23334566675 555666653211 11124677778888777777777764 677888877765566666
Q ss_pred ee
Q 025500 183 ME 184 (252)
Q Consensus 183 ~~ 184 (252)
+-
T Consensus 212 ig 213 (231)
T cd02801 212 IG 213 (231)
T ss_pred Ec
Confidence 63
No 152
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=51.95 E-value=1.6e+02 Score=25.49 Aligned_cols=103 Identities=13% Similarity=0.111 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCC-------cCCC-cHHHHHHHHHhc----CCCCCEEEEeccCccCCCCcccccCCC
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADV-------YGQN-ANEVLLGKALKQ----LPREKIQVATKFGIAGIGVAGVIVKGA 106 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~-------Yg~g-~se~~ig~~l~~----~~R~~~~i~tK~~~~~~~~~~~~~~~~ 106 (252)
+-+...++|+.-.+.||++|=.++. ...+ .-++.+...|+. +....+.++..-+.... .-+.+
T Consensus 43 Nl~~l~~~L~~n~~~~I~~yRisS~liP~ashp~~~~~~~~~~~~~l~~iG~~~~~~~iRls~HP~qf~v-----LnSp~ 117 (275)
T PF03851_consen 43 NLEDLLRILEYNIAHGIRFYRISSDLIPLASHPEVGWDWEEEFAEELAEIGDLAKENGIRLSMHPDQFTV-----LNSPR 117 (275)
T ss_dssp HHHHHHHHHHHHHHTT--EEE--TTSSTTTTSTT--S-HHHHHHHHHHHHHHHHHHTT-EEEE---TT-------TT-SS
T ss_pred HHHHHHHHHHHHHHcCCCEEecCcccCCCCCCcccccchHHHHHHHHHHHHHHHHHcCCeEEecCCccee-----CCCCC
Confidence 3466788899999999999987651 1101 123333333333 34567777777654321 11234
Q ss_pred hHHHHHHHHH------HHHHcCCCcc--cEEEccCCCCCCCHHHHHHH
Q 025500 107 PDYVRSCCEA------SLKRLDVDYI--DLYYQHRVDTSVPIEETIGE 146 (252)
Q Consensus 107 ~~~i~~~~~~------sL~~Lg~d~i--Dl~~lh~~~~~~~~~~~~~~ 146 (252)
++.++++++. .|+.||++.- ..+.||--....+.+++++.
T Consensus 118 ~~Vv~~si~~L~yH~~~Ld~mg~~~~~~~~i~IH~GG~YgdK~~al~R 165 (275)
T PF03851_consen 118 EEVVENSIRDLEYHARLLDLMGLDDSPDHKINIHVGGVYGDKEAALER 165 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-TT----EEEEE----SS-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccccEEEEeeCCCCCChHHHHHH
Confidence 6677777654 5888999877 88899987655555544443
No 153
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=51.83 E-value=1.6e+02 Score=25.45 Aligned_cols=152 Identities=12% Similarity=0.138 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhcCCCC-CEEEEeccCccCCCCcccccCCChHHHHHHHHHHH
Q 025500 40 EEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPRE-KIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASL 118 (252)
Q Consensus 40 ~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~~~R~-~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 118 (252)
.+...+.++.-.+.+..|+..+..-|....+..+.-+-. +.++ .+-+...+.-. +.+...+...+.+.
T Consensus 15 ~~~~~~~~~~l~~~~p~fvsvT~~~~~~~~~~t~~~~~~-l~~~~g~~~i~Hltcr---------~~~~~~l~~~L~~~- 83 (281)
T TIGR00677 15 VQNLYERMDRMVASGPLFIDITWGAGGTTAELTLTIASR-AQNVVGVETCMHLTCT---------NMPIEMIDDALERA- 83 (281)
T ss_pred HHHHHHHHHHHhhCCCCEEEeccCCCCcchhhHHHHHHH-HHHhcCCCeeEEeccC---------CCCHHHHHHHHHHH-
Confidence 455666777777889999998865533334444433322 2222 22222222221 24566666666555
Q ss_pred HHcCCCcccEEEcc-CCC--------CCCCHHHHHHHHHHHHHc-CCccEEEccCCC--------HH-HHHHHhhc----
Q 025500 119 KRLDVDYIDLYYQH-RVD--------TSVPIEETIGEMKKLVEE-GKIKYIGLSEAS--------PG-TIRRAHAV---- 175 (252)
Q Consensus 119 ~~Lg~d~iDl~~lh-~~~--------~~~~~~~~~~~L~~l~~~-G~ir~iGvs~~~--------~~-~l~~~~~~---- 175 (252)
..+|++. ++.|- .+. ....+..+.+-++.+++. |..-+||+..++ .+ .++.+.++
T Consensus 84 ~~~Gi~n--iLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aG 161 (281)
T TIGR00677 84 YSNGIQN--ILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAESVELDLKYLKEKVDAG 161 (281)
T ss_pred HHCCCCE--EEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 7888753 33332 221 111223355555556554 444579998774 11 24444433
Q ss_pred CCceEEeeecCccccchhhhHHHHHHHhCCeE
Q 025500 176 HPITAVQMEWSLWTRDIEEEIIPLCRELGIGI 207 (252)
Q Consensus 176 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v 207 (252)
..+-+-|.-|+. ....+.++.|++.|+.+
T Consensus 162 A~f~iTQ~~Fd~---~~~~~f~~~~~~~gi~~ 190 (281)
T TIGR00677 162 ADFIITQLFYDV---DNFLKFVNDCRAIGIDC 190 (281)
T ss_pred CCEeeccceecH---HHHHHHHHHHHHcCCCC
Confidence 235555554443 22367888999997754
No 154
>PRK09061 D-glutamate deacylase; Validated
Probab=51.72 E-value=1.4e+02 Score=28.21 Aligned_cols=113 Identities=9% Similarity=0.040 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHHHH-
Q 025500 41 EDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLK- 119 (252)
Q Consensus 41 ~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~- 119 (252)
++..++++.|++.|+..|=+...|-++.+...+-+.++...+....|......... .+......++++.++
T Consensus 169 ~~m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~--------~~~~~e~~av~~~i~l 240 (509)
T PRK09061 169 AEILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLAARAGVPTYTHVRYLSN--------VDPRSSVDAYQELIAA 240 (509)
T ss_pred HHHHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEEEecCccc--------CCchhHHHHHHHHHHH
Confidence 34788899999999999977556644445555666666555556677666643221 011122223333333
Q ss_pred --HcCCCcccEEEccCCCC-CCCHHHHHHHHHHHHHcCCccEEEccCC
Q 025500 120 --RLDVDYIDLYYQHRVDT-SVPIEETIGEMKKLVEEGKIKYIGLSEA 164 (252)
Q Consensus 120 --~Lg~d~iDl~~lh~~~~-~~~~~~~~~~L~~l~~~G~ir~iGvs~~ 164 (252)
..|. -+.+.|-... .....+.++.+++++++|.--..-++-|
T Consensus 241 A~~~G~---rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~P~ 285 (509)
T PRK09061 241 AAETGA---HMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAYPY 285 (509)
T ss_pred HHHhCC---CEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEecCc
Confidence 4443 3555565432 2345678899999999986444444433
No 155
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=51.68 E-value=1.8e+02 Score=26.07 Aligned_cols=97 Identities=15% Similarity=0.191 Sum_probs=61.1
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCC-ccEEEccCCCHHHHHHHhhcCCceEEe
Q 025500 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPGTIRRAHAVHPITAVQ 182 (252)
Q Consensus 104 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q 182 (252)
.++.+... .+-+.|.++|+++|++- +|... +.-++.++.+.+.+. .+..+++..+.+.++.+.+.. .+.+.
T Consensus 19 ~~s~~~k~-~ia~~L~~~Gv~~IEvG---~p~~~---~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g-~~~i~ 90 (365)
T TIGR02660 19 AFTAAEKL-AIARALDEAGVDELEVG---IPAMG---EEERAVIRAIVALGLPARLMAWCRARDADIEAAARCG-VDAVH 90 (365)
T ss_pred CCCHHHHH-HHHHHHHHcCCCEEEEe---CCCCC---HHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCC-cCEEE
Confidence 35555544 45566999999999885 34321 234667777776643 777777878888888887652 33444
Q ss_pred eecCccc--------cch------hhhHHHHHHHhCCeEE
Q 025500 183 MEWSLWT--------RDI------EEEIIPLCRELGIGIV 208 (252)
Q Consensus 183 ~~~~~~~--------~~~------~~~l~~~~~~~gi~v~ 208 (252)
+-....+ ... -.+.+++++++|+.|.
T Consensus 91 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~ 130 (365)
T TIGR02660 91 ISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS 130 (365)
T ss_pred EEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 4332211 111 1478899999998765
No 156
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=51.46 E-value=1.4e+02 Score=24.78 Aligned_cols=141 Identities=11% Similarity=0.119 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHHHH
Q 025500 40 EEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLK 119 (252)
Q Consensus 40 ~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 119 (252)
.....+++..|.+.|+..|=.+++...........+.+ . ++-|-+.+-... ...+.+.+- ++
T Consensus 15 ~~~~~e~i~~A~~~Gl~~i~itdH~~~~~~~~~~~~~~---~--~i~Il~GiEi~~---------~~~~~~~~~----~~ 76 (237)
T PRK00912 15 YDTVLRLISEASHLGYSGIALSNHSDKYPESKPELEDL---L--GFEIFRGVEIVA---------SNPSKLRGL----VG 76 (237)
T ss_pred cchHHHHHHHHHHCCCCEEEEecCcccccchhHHHHHh---c--CCcEEeeEEEec---------CCHHHHHHH----HH
Confidence 45678999999999999887777653210101111111 1 233322221111 234443333 33
Q ss_pred HcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCC-------CHHHHHHHhhcCCceEEeeecCccccc-
Q 025500 120 RLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-------SPGTIRRAHAVHPITAVQMEWSLWTRD- 191 (252)
Q Consensus 120 ~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~-------~~~~l~~~~~~~~~~~~q~~~~~~~~~- 191 (252)
+. .+.+|++.+| |.. +.+ ...+.+.+.|.-||--.. ....++.+.+.. ..+.+.++.+...
T Consensus 77 ~~-~~~~d~v~v~-~~~----~~~---~~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~g--v~lEIn~s~~~~~~ 145 (237)
T PRK00912 77 KF-RKKVDVLAVH-GGD----EKV---NRAACENPRVDILSHPYTKRKDSGINHVLAKEAARNN--VAIEFNLRDILKSR 145 (237)
T ss_pred hc-cCcccEEEEe-CCC----HHH---HHHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCC--eEEEEEchHhhhhc
Confidence 32 2356888888 222 111 135778888888887542 223334444433 1233444432111
Q ss_pred ---------hhhhHHHHHHHhCCeEEe
Q 025500 192 ---------IEEEIIPLCRELGIGIVP 209 (252)
Q Consensus 192 ---------~~~~l~~~~~~~gi~v~a 209 (252)
....++..|++.|+.++.
T Consensus 146 ~~~r~~~~~~~~~~~~~~~~~g~piii 172 (237)
T PRK00912 146 GGRRARTLSNFRDNLALARKYDFPLVL 172 (237)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 115799999999988873
No 157
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=51.33 E-value=1.4e+02 Score=27.33 Aligned_cols=60 Identities=10% Similarity=-0.071 Sum_probs=38.0
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEccCCCCC-------CCHH---HHH-HHHHHHHHcCCccEEEccCCCH
Q 025500 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-------VPIE---ETI-GEMKKLVEEGKIKYIGLSEASP 166 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-------~~~~---~~~-~~L~~l~~~G~ir~iGvs~~~~ 166 (252)
-+.+.+.+.++..+ +|+.+++.++.+.-.... ...+ +.+ .+.+.|.+.|- +.+++++|..
T Consensus 205 qt~e~~~~~l~~~~-~l~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy-~~yei~~far 275 (430)
T PRK08208 205 QTHASWMESLDQAL-VYRPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGY-TQTSMRMFRR 275 (430)
T ss_pred CCHHHHHHHHHHHH-hCCCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCC-eEEeecceec
Confidence 46788888887776 588999999887543211 0111 233 34555667775 5588888764
No 158
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=51.30 E-value=1.7e+02 Score=25.70 Aligned_cols=77 Identities=17% Similarity=0.132 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHcCCccEEEccC---------CCHHHHHHHhhcCCceEEeeecCccc--cchhhhHHHHHHHhCCeEEe
Q 025500 141 EETIGEMKKLVEEGKIKYIGLSE---------ASPGTIRRAHAVHPITAVQMEWSLWT--RDIEEEIIPLCRELGIGIVP 209 (252)
Q Consensus 141 ~~~~~~L~~l~~~G~ir~iGvs~---------~~~~~l~~~~~~~~~~~~q~~~~~~~--~~~~~~l~~~~~~~gi~v~a 209 (252)
....+.++.+++.+.++.|.+.+ .+.+.++.+.+......+.++.+-.. .......++.+++.||.+..
T Consensus 153 ~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~ 232 (321)
T TIGR03822 153 RRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKTVYVALHANHARELTAEARAACARLIDAGIPMVS 232 (321)
T ss_pred HHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCcEEEEecCCChhhcCHHHHHHHHHHHHcCCEEEE
Confidence 45677778888888776555533 33444555544442223333333111 11125677788899999999
Q ss_pred cccCcccc
Q 025500 210 YSPLGRGF 217 (252)
Q Consensus 210 ~spl~~G~ 217 (252)
.+++..|.
T Consensus 233 q~vLl~gv 240 (321)
T TIGR03822 233 QSVLLRGV 240 (321)
T ss_pred EeeEeCCC
Confidence 99998875
No 159
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=51.12 E-value=79 Score=24.88 Aligned_cols=75 Identities=20% Similarity=0.160 Sum_probs=47.9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhcCCCC-CEEEEe-ccCccCCCCcccccCCChHHHHH
Q 025500 35 SSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPRE-KIQVAT-KFGIAGIGVAGVIVKGAPDYVRS 112 (252)
Q Consensus 35 ~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~~~R~-~~~i~t-K~~~~~~~~~~~~~~~~~~~i~~ 112 (252)
|....++...-++++|-+.|+.+|=.|+.||. .--+++.-++.+ ++++.| ..+... .....+.+
T Consensus 8 G~eNT~~tle~a~erA~elgik~~vVAS~tG~-----tA~k~lemveg~lkvVvVthh~Gf~e---------~g~~e~~~ 73 (186)
T COG1751 8 GKENTDETLEIAVERAKELGIKHIVVASSTGY-----TALKALEMVEGDLKVVVVTHHAGFEE---------KGTQEMDE 73 (186)
T ss_pred cccchHHHHHHHHHHHHhcCcceEEEEecccH-----HHHHHHHhcccCceEEEEEeeccccc---------CCceecCH
Confidence 34445667788889999999999999999983 222333323332 344444 333332 23455777
Q ss_pred HHHHHHHHcCC
Q 025500 113 CCEASLKRLDV 123 (252)
Q Consensus 113 ~~~~sL~~Lg~ 123 (252)
.+++-|+..|.
T Consensus 74 E~~~~L~erGa 84 (186)
T COG1751 74 EVRKELKERGA 84 (186)
T ss_pred HHHHHHHHcCc
Confidence 88888999886
No 160
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=50.80 E-value=1.8e+02 Score=25.69 Aligned_cols=94 Identities=15% Similarity=0.123 Sum_probs=54.4
Q ss_pred CCCEEEEeccCccCCCCcccccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCC--C--CCH--HHHHHHHHHHHHcCC
Q 025500 82 REKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT--S--VPI--EETIGEMKKLVEEGK 155 (252)
Q Consensus 82 R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~--~--~~~--~~~~~~L~~l~~~G~ 155 (252)
.+++.|..|+....... ...+.+... .+-+.|+..|+|++++ |.... . ... ...++.++++++.=.
T Consensus 219 G~d~~v~vri~~~~~~~----~g~~~~e~~-~ia~~Le~~gvd~iev---~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~ 290 (336)
T cd02932 219 PEDKPLFVRISATDWVE----GGWDLEDSV-ELAKALKELGVDLIDV---SSGGNSPAQKIPVGPGYQVPFAERIRQEAG 290 (336)
T ss_pred CCCceEEEEEcccccCC----CCCCHHHHH-HHHHHHHHcCCCEEEE---CCCCCCcccccCCCccccHHHHHHHHhhCC
Confidence 45678888987533111 113344333 3444567778766653 32110 0 011 122456677777767
Q ss_pred ccEEEccCC-CHHHHHHHhhcCCceEEee
Q 025500 156 IKYIGLSEA-SPGTIRRAHAVHPITAVQM 183 (252)
Q Consensus 156 ir~iGvs~~-~~~~l~~~~~~~~~~~~q~ 183 (252)
+.-++..+. +++..+++++....+.+++
T Consensus 291 iPVi~~G~i~t~~~a~~~l~~g~aD~V~~ 319 (336)
T cd02932 291 IPVIAVGLITDPEQAEAILESGRADLVAL 319 (336)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCCCeehh
Confidence 888888875 7888888888776777665
No 161
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=50.55 E-value=41 Score=31.58 Aligned_cols=128 Identities=20% Similarity=0.213 Sum_probs=70.6
Q ss_pred HHHHHHHHHCCCCEEe--CcCCcCC--------CcHHHHHHHHHhc---CCCCCEEEEeccCccCCCC---------ccc
Q 025500 44 ISMIKHAFSKGITFFD--TADVYGQ--------NANEVLLGKALKQ---LPREKIQVATKFGIAGIGV---------AGV 101 (252)
Q Consensus 44 ~~~l~~A~~~Gin~~D--ta~~Yg~--------g~se~~ig~~l~~---~~R~~~~i~tK~~~~~~~~---------~~~ 101 (252)
-+-+....+.|+..+- ||.+|.. |.-|.+..-+-+. -.+.++|+++-++-..-.+ ..-
T Consensus 105 ~e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g~~L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l 184 (546)
T PF01175_consen 105 WEHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFGGDLAGKLFLTAGLGGMGGAQPLAATMAGGVGL 184 (546)
T ss_dssp HHHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHSTTS-TT-EEEEE--STTCCHHHHHHHHTT-EEE
T ss_pred HHHHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcCCCCcceEEEEecccccccchHHHHHhcCceEE
Confidence 3445666778888554 5554431 3334433322222 4578899999998654211 011
Q ss_pred ccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhc-CC--c
Q 025500 102 IVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV-HP--I 178 (252)
Q Consensus 102 ~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~--~ 178 (252)
..+.+++.++ +|+.+.|+|.+. .+++++++..++.+++|+..+||+-..-.+.++++.+. .. +
T Consensus 185 ~vEvd~~ri~-------kR~~~g~ld~~~-------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl 250 (546)
T PF01175_consen 185 IVEVDPSRIE-------KRLEQGYLDEVT-------DDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDL 250 (546)
T ss_dssp EEES-HHHHH-------HHHHTTSSSEEE-------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SE
T ss_pred EEEECHHHHH-------HHHhCCCeeEEc-------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCc
Confidence 2334454444 566677877653 45889999999999999999999999888999998876 23 3
Q ss_pred eEEeeec
Q 025500 179 TAVQMEW 185 (252)
Q Consensus 179 ~~~q~~~ 185 (252)
..-|...
T Consensus 251 ~tDQTS~ 257 (546)
T PF01175_consen 251 VTDQTSA 257 (546)
T ss_dssp E---SST
T ss_pred ccCCCcc
Confidence 4446654
No 162
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=50.40 E-value=84 Score=26.98 Aligned_cols=99 Identities=14% Similarity=0.085 Sum_probs=58.5
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEccCCCC---CCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhcCCceEE
Q 025500 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT---SVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAV 181 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~---~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~ 181 (252)
++.+ -+..+-+.|.++|+++|++-..-.|.. ..+.+++...+.. ...++..++. .+...++++.+.. .+.+
T Consensus 17 ~s~e-~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~---~~~~~~~~~~-~~~~dv~~A~~~g-~~~i 90 (274)
T cd07938 17 IPTE-DKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPR---RPGVRYSALV-PNLRGAERALAAG-VDEV 90 (274)
T ss_pred cCHH-HHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhccc---CCCCEEEEEC-CCHHHHHHHHHcC-cCEE
Confidence 3444 445566779999999999985544432 1233444444443 2346666765 4667788888753 3333
Q ss_pred eeecCccc--------cc------hhhhHHHHHHHhCCeEEe
Q 025500 182 QMEWSLWT--------RD------IEEEIIPLCRELGIGIVP 209 (252)
Q Consensus 182 q~~~~~~~--------~~------~~~~l~~~~~~~gi~v~a 209 (252)
.+..+.-+ .. ...+.+++++++|+.+..
T Consensus 91 ~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~ 132 (274)
T cd07938 91 AVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRG 132 (274)
T ss_pred EEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 33322211 11 115678999999999863
No 163
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=50.18 E-value=1.2e+02 Score=27.52 Aligned_cols=60 Identities=12% Similarity=0.056 Sum_probs=37.0
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEccCCCCC-------------CCHH---HHHH-HHHHHHHcCCccEEEccCCCH
Q 025500 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-------------VPIE---ETIG-EMKKLVEEGKIKYIGLSEASP 166 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-------------~~~~---~~~~-~L~~l~~~G~ir~iGvs~~~~ 166 (252)
-+.+.+.+.++..++ |+.++|.+|.+.-.... .+.+ +.++ +.+.|.+.|-.+ +++|||..
T Consensus 174 qt~e~~~~~l~~~~~-l~p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~-yeis~fa~ 250 (390)
T PRK06582 174 QTLKDWQEELKQAMQ-LATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYFR-YEISNYAK 250 (390)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCce-eeceeeeC
Confidence 467788888888876 78999999887532110 0111 2233 344566666644 78888764
No 164
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=49.94 E-value=1.2e+02 Score=25.83 Aligned_cols=100 Identities=18% Similarity=0.192 Sum_probs=58.3
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCC-ccEEEccCCCHHHHHHHhhcCCceEEe
Q 025500 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPGTIRRAHAVHPITAVQ 182 (252)
Q Consensus 104 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q 182 (252)
.++.+...+ +-+.|.++|++.|.+-. |... .+.+++.+.+.+.++ .+-.+....+.+.++.+.+.+ ++.+.
T Consensus 18 ~~s~~~k~~-i~~~L~~~Gv~~IEvG~---P~~~---~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~g-~~~i~ 89 (262)
T cd07948 18 FFDTEDKIE-IAKALDAFGVDYIELTS---PAAS---PQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVETG-VDGVD 89 (262)
T ss_pred CCCHHHHHH-HHHHHHHcCCCEEEEEC---CCCC---HHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHcC-cCEEE
Confidence 345555554 44559999998888874 5433 233455555554443 444556677788888888753 33333
Q ss_pred eecCcc--------ccch------hhhHHHHHHHhCCeEEecc
Q 025500 183 MEWSLW--------TRDI------EEEIIPLCRELGIGIVPYS 211 (252)
Q Consensus 183 ~~~~~~--------~~~~------~~~l~~~~~~~gi~v~a~s 211 (252)
+-++.- .... -.+++++++++|+.|..+-
T Consensus 90 i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ 132 (262)
T cd07948 90 LVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS 132 (262)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 322211 1111 1567788999998866554
No 165
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=49.60 E-value=1.6e+02 Score=24.98 Aligned_cols=96 Identities=16% Similarity=0.182 Sum_probs=59.3
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEcc-CCCCCCCHHHHHHHHHHHHHc-CCccEEEccCCCHHHHHHHhhcC---Cce
Q 025500 105 GAPDYVRSCCEASLKRLDVDYIDLYYQH-RVDTSVPIEETIGEMKKLVEE-GKIKYIGLSEASPGTIRRAHAVH---PIT 179 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh-~~~~~~~~~~~~~~L~~l~~~-G~ir~iGvs~~~~~~l~~~~~~~---~~~ 179 (252)
++.+... .+-+.|.++|+++|++-..- +++ -|+.++.+.+. ..++..+++......++.+.+.. +++
T Consensus 17 ~~~~~k~-~i~~~L~~~Gv~~iEvg~~~~~~~-------~~~~~~~l~~~~~~~~~~~l~r~~~~~v~~a~~~~~~~~~~ 88 (268)
T cd07940 17 LTPEEKL-EIARQLDELGVDVIEAGFPAASPG-------DFEAVKRIAREVLNAEICGLARAVKKDIDAAAEALKPAKVD 88 (268)
T ss_pred CCHHHHH-HHHHHHHHcCCCEEEEeCCCCCHH-------HHHHHHHHHHhCCCCEEEEEccCCHhhHHHHHHhCCCCCCC
Confidence 4555555 45556999999999996432 221 24666666653 34777788766677777776653 255
Q ss_pred EEeeecCccc--------cc------hhhhHHHHHHHhCCeEE
Q 025500 180 AVQMEWSLWT--------RD------IEEEIIPLCRELGIGIV 208 (252)
Q Consensus 180 ~~q~~~~~~~--------~~------~~~~l~~~~~~~gi~v~ 208 (252)
.+.+-++..+ .. .-.+.+++|+++|+.|.
T Consensus 89 ~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~ 131 (268)
T cd07940 89 RIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVE 131 (268)
T ss_pred EEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 5555433211 11 11568889999998876
No 166
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=49.38 E-value=1.1e+02 Score=24.69 Aligned_cols=100 Identities=16% Similarity=0.189 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEccCCC--CCCCHHHHHHHHHHHHHcCCccEEEccCCCH--HHHHHHhhcCCceEEee
Q 025500 108 DYVRSCCEASLKRLDVDYIDLYYQHRVD--TSVPIEETIGEMKKLVEEGKIKYIGLSEASP--GTIRRAHAVHPITAVQM 183 (252)
Q Consensus 108 ~~i~~~~~~sL~~Lg~d~iDl~~lh~~~--~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~--~~l~~~~~~~~~~~~q~ 183 (252)
......+...+++.+... +-+.+.-.. .........+.++.|++.|- .+.+.+++. ..+..+. ..+++.+-+
T Consensus 99 ~~~~~~l~~~l~~~~~~~-~~lvlei~e~~~~~~~~~~~~~i~~l~~~G~--~ialddfg~~~~~~~~l~-~l~~d~iKl 174 (241)
T smart00052 99 PDLVPRVLELLEETGLPP-QRLELEITESVLLDDDESAVATLQRLRELGV--RIALDDFGTGYSSLSYLK-RLPVDLLKI 174 (241)
T ss_pred chHHHHHHHHHHHcCCCH-HHEEEEEeChhhhcChHHHHHHHHHHHHCCC--EEEEeCCCCcHHHHHHHH-hCCCCeEEE
Confidence 345566777788877642 223332222 12233445688999999997 466666543 2333333 346777766
Q ss_pred ecCcccc--------chhhhHHHHHHHhCCeEEecc
Q 025500 184 EWSLWTR--------DIEEEIIPLCRELGIGIVPYS 211 (252)
Q Consensus 184 ~~~~~~~--------~~~~~l~~~~~~~gi~v~a~s 211 (252)
+.++... ..-..++..|+..|+.|++-.
T Consensus 175 d~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g 210 (241)
T smart00052 175 DKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEG 210 (241)
T ss_pred CHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEec
Confidence 6544322 112678899999999998653
No 167
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=49.33 E-value=57 Score=28.55 Aligned_cols=133 Identities=16% Similarity=0.108 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEeC----------cCCcCCC--cHHHHHHHHHhcCC-CCCEEEEeccCccCCCCcccccCC
Q 025500 39 SEEDGISMIKHAFSKGITFFDT----------ADVYGQN--ANEVLLGKALKQLP-REKIQVATKFGIAGIGVAGVIVKG 105 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dt----------a~~Yg~g--~se~~ig~~l~~~~-R~~~~i~tK~~~~~~~~~~~~~~~ 105 (252)
+++...++.+.+.+.|+..||- ...+|.+ ..-+.+.+.++.+. .-++-|+.|+..... .
T Consensus 64 ~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~--------~ 135 (309)
T PF01207_consen 64 DPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWD--------D 135 (309)
T ss_dssp -HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT---------
T ss_pred cHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccccc--------c
Confidence 7888888888888889999994 2234432 23455555555411 123666777665431 1
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCH--HHHHHHHHHHHHcCCccEEEccC-CCHHHHHHHhhcCCceEEe
Q 025500 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPI--EETIGEMKKLVEEGKIKYIGLSE-ASPGTIRRAHAVHPITAVQ 182 (252)
Q Consensus 106 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~--~~~~~~L~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q 182 (252)
+.+...+ +-+.|+..| +|.+.||-....+.. ..-|+.+.++++.=.|--||=.+ ++.+...+.++....+-++
T Consensus 136 ~~~~~~~-~~~~l~~~G---~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvM 211 (309)
T PF01207_consen 136 SPEETIE-FARILEDAG---VSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVM 211 (309)
T ss_dssp -CHHHHH-HHHHHHHTT-----EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEE
T ss_pred chhHHHH-HHHHhhhcc---cceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEE
Confidence 2344443 555777777 688999997554432 45699999999887787777666 6778888877653444444
Q ss_pred e
Q 025500 183 M 183 (252)
Q Consensus 183 ~ 183 (252)
+
T Consensus 212 i 212 (309)
T PF01207_consen 212 I 212 (309)
T ss_dssp E
T ss_pred E
Confidence 4
No 168
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=49.26 E-value=1.7e+02 Score=25.00 Aligned_cols=178 Identities=16% Similarity=0.141 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCCCc---------HHHHHHHHHhcC-CCCCEEEEeccCccCCC--------Ccc
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQNA---------NEVLLGKALKQL-PREKIQVATKFGIAGIG--------VAG 100 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~---------se~~ig~~l~~~-~R~~~~i~tK~~~~~~~--------~~~ 100 (252)
+.++..++.+..-++||..|+....-+.+. .++.+.+..+.. ++.++.+.......... ..+
T Consensus 18 ~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~gv~ 97 (266)
T cd07944 18 GDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASGSVVD 97 (266)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhcCCcC
Confidence 689999999999999999999763222111 245666555533 24455544443321100 001
Q ss_pred c----ccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccC----CCHHHHHHH
Q 025500 101 V----IVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE----ASPGTIRRA 172 (252)
Q Consensus 101 ~----~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~----~~~~~l~~~ 172 (252)
. ......+.+.+.++.. +..|. .+-+.+.+... .+.+.+.+.++++.+.| +..|.+++ .+++++.++
T Consensus 98 ~iri~~~~~~~~~~~~~i~~a-k~~G~-~v~~~~~~a~~--~~~~~~~~~~~~~~~~g-~~~i~l~DT~G~~~P~~v~~l 172 (266)
T cd07944 98 MIRVAFHKHEFDEALPLIKAI-KEKGY-EVFFNLMAISG--YSDEELLELLELVNEIK-PDVFYIVDSFGSMYPEDIKRI 172 (266)
T ss_pred EEEEecccccHHHHHHHHHHH-HHCCC-eEEEEEEeecC--CCHHHHHHHHHHHHhCC-CCEEEEecCCCCCCHHHHHHH
Confidence 0 1122344444444444 33454 33443333332 34556666667776665 56676665 456665555
Q ss_pred hhcC--Cce-EEeeecCccccch-hhhHHHHHHHhCCeEEecccCccccCCCC
Q 025500 173 HAVH--PIT-AVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRGFFGGK 221 (252)
Q Consensus 173 ~~~~--~~~-~~q~~~~~~~~~~-~~~l~~~~~~~gi~v~a~spl~~G~L~~~ 221 (252)
.... .+. -+.+.+|..+..- ...-.-.+-+.|+.++--+-.+.|--+|.
T Consensus 173 v~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~~vd~s~~G~G~~aGN 225 (266)
T cd07944 173 ISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEIIDATVYGMGRGAGN 225 (266)
T ss_pred HHHHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCCEEEEecccCCCCcCc
Confidence 4331 111 1234444433321 12222223468888887777776654443
No 169
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=49.08 E-value=57 Score=26.99 Aligned_cols=81 Identities=21% Similarity=0.193 Sum_probs=47.2
Q ss_pred HHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCC---ccEEEccC-CCHHHHHHHhhcC-CceEEeeecCc
Q 025500 113 CCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK---IKYIGLSE-ASPGTIRRAHAVH-PITAVQMEWSL 187 (252)
Q Consensus 113 ~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~---ir~iGvs~-~~~~~l~~~~~~~-~~~~~q~~~~~ 187 (252)
.+-+.|-.-|+.-+.+-+= . ....+.+++++++-. =-.||+.+ .+.++.+++.+.+ .|-+ ++
T Consensus 29 ~~~~al~~~Gi~~iEit~~-~-------~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fiv-----sP 95 (213)
T PRK06552 29 KISLAVIKGGIKAIEVTYT-N-------PFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIV-----SP 95 (213)
T ss_pred HHHHHHHHCCCCEEEEECC-C-------ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEE-----CC
Confidence 3445566666655554431 1 124555566655421 13588877 6778888887763 3321 22
Q ss_pred cccchhhhHHHHHHHhCCeEEe
Q 025500 188 WTRDIEEEIIPLCRELGIGIVP 209 (252)
Q Consensus 188 ~~~~~~~~l~~~~~~~gi~v~a 209 (252)
....+++++|+++|+.++.
T Consensus 96 ---~~~~~v~~~~~~~~i~~iP 114 (213)
T PRK06552 96 ---SFNRETAKICNLYQIPYLP 114 (213)
T ss_pred ---CCCHHHHHHHHHcCCCEEC
Confidence 2237888888888887763
No 170
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=49.03 E-value=1.5e+02 Score=27.64 Aligned_cols=104 Identities=11% Similarity=0.088 Sum_probs=56.9
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEccCCCC--CCCHHHHHHHHHHHHHc-CCccE---------EEccCCCHHH----
Q 025500 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT--SVPIEETIGEMKKLVEE-GKIKY---------IGLSEASPGT---- 168 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~--~~~~~~~~~~L~~l~~~-G~ir~---------iGvs~~~~~~---- 168 (252)
.+.+... .+-+.|.++|++.|++.-=...+. .-.-++.|+.++.+++. ..++. +|.+++.-+.
T Consensus 23 ~~t~dkl-~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~ 101 (448)
T PRK12331 23 MTTEEML-PILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESF 101 (448)
T ss_pred cCHHHHH-HHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHH
Confidence 4454444 355568999999999830000010 00012357777777765 22332 4555554333
Q ss_pred HHHHhhcCCceEEeeecCccccchhhhHHHHHHHhCCeEEec
Q 025500 169 IRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPY 210 (252)
Q Consensus 169 l~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~ 210 (252)
++++.+ ..++++.+-..+.+...-...+++++++|+.+...
T Consensus 102 v~~A~~-~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~ 142 (448)
T PRK12331 102 VQKSVE-NGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVA 142 (448)
T ss_pred HHHHHH-CCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEE
Confidence 344443 34566666554444332367899999999876543
No 171
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=49.02 E-value=2e+02 Score=25.86 Aligned_cols=88 Identities=15% Similarity=0.129 Sum_probs=54.5
Q ss_pred cEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhc-CCceEEeeecCccccch-hhhHHHHHHHhC
Q 025500 127 DLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV-HPITAVQMEWSLWTRDI-EEEIIPLCRELG 204 (252)
Q Consensus 127 Dl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~-~~~l~~~~~~~g 204 (252)
|-+++..|.. ......+..+...+.++..-+...+.+.+++++.. ..+.++..+-|+.-... .+.+.+.|+++|
T Consensus 91 D~Vl~~~p~y----~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g 166 (382)
T TIGR02080 91 DLLVAPHDCY----GGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAVG 166 (382)
T ss_pred CEEEEcCCCc----HHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHHHcC
Confidence 6666655533 23445555555565555555555677888887643 33444444555543322 278999999999
Q ss_pred CeEEecccCccccC
Q 025500 205 IGIVPYSPLGRGFF 218 (252)
Q Consensus 205 i~v~a~spl~~G~L 218 (252)
+.++.=..++.+..
T Consensus 167 ~~vvvD~a~~~~~~ 180 (382)
T TIGR02080 167 AVVVVDNTFLSPAL 180 (382)
T ss_pred CEEEEECCCccccc
Confidence 99998888765543
No 172
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=48.94 E-value=1.5e+02 Score=27.50 Aligned_cols=92 Identities=14% Similarity=0.036 Sum_probs=54.2
Q ss_pred HHHHHHHHcCCCcccEEEccCC--------CCCCCHHHHHHHHHHHHHcCCccE----EEccCCCHHHHHHHhhc---CC
Q 025500 113 CCEASLKRLDVDYIDLYYQHRV--------DTSVPIEETIGEMKKLVEEGKIKY----IGLSEASPGTIRRAHAV---HP 177 (252)
Q Consensus 113 ~~~~sL~~Lg~d~iDl~~lh~~--------~~~~~~~~~~~~L~~l~~~G~ir~----iGvs~~~~~~l~~~~~~---~~ 177 (252)
.+-+.+++.|+.++-+ =+... ......+++.++++.+++.|.--. +|+-+.+.+.+++.++. ..
T Consensus 288 e~l~~l~~aG~~~v~i-GiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~ 366 (472)
T TIGR03471 288 ETLKVMKENGLRLLLV-GYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELN 366 (472)
T ss_pred HHHHHHHHcCCCEEEE-cCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcC
Confidence 3345566677655432 22222 223346678888999999987433 36677787777665443 33
Q ss_pred ceEEeeecCccccchhhhHHHHHHHhCCeE
Q 025500 178 ITAVQMEWSLWTRDIEEEIIPLCRELGIGI 207 (252)
Q Consensus 178 ~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v 207 (252)
++.++ ++++.+-....+.+.++++|.-.
T Consensus 367 ~~~~~--~~~l~P~PGT~l~~~~~~~g~~~ 394 (472)
T TIGR03471 367 PHTIQ--VSLAAPYPGTELYDQAKQNGWIT 394 (472)
T ss_pred CCcee--eeecccCCCcHHHHHHHHCCCcC
Confidence 44333 34444433467888888887643
No 173
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=48.62 E-value=62 Score=26.88 Aligned_cols=28 Identities=18% Similarity=0.315 Sum_probs=24.8
Q ss_pred ecCccccchhhhHHHHHHHhCCeEEecc
Q 025500 184 EWSLWTRDIEEEIIPLCRELGIGIVPYS 211 (252)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~~gi~v~a~s 211 (252)
+||++++..+.++.+..++.|+.|+...
T Consensus 192 pY~~~D~~in~~I~~~l~~~G~~vit~d 219 (221)
T PF09989_consen 192 PYNIYDPFINMGIPDKLRSLGVPVITED 219 (221)
T ss_pred CCcCCCcccCCchHHHHHHCCCeeeCcc
Confidence 8999999888999999999999998653
No 174
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=48.09 E-value=2e+02 Score=25.53 Aligned_cols=178 Identities=15% Similarity=0.088 Sum_probs=85.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEeCc---------CCcCCC--cHHHHHHHHHhcCCCCCEEEEeccCccCCC--------C
Q 025500 38 VSEEDGISMIKHAFSKGITFFDTA---------DVYGQN--ANEVLLGKALKQLPREKIQVATKFGIAGIG--------V 98 (252)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta---------~~Yg~g--~se~~ig~~l~~~~R~~~~i~tK~~~~~~~--------~ 98 (252)
.+.++..+++...-++||..|+.. -.||.. ..++.+.+..+..++.++.+..--+..... .
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~g 100 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAYDAG 100 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHHHHCC
Confidence 378999999999999999999984 222221 245666655554555444432211110000 0
Q ss_pred ccc----ccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccC----CCHHHHH
Q 025500 99 AGV----IVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE----ASPGTIR 170 (252)
Q Consensus 99 ~~~----~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~----~~~~~l~ 170 (252)
.+. .+....+.+.+.++ ..+.+|.+ +-.++...+ ..+.+...+..+.+.+.| +..|.+.+ ..++++.
T Consensus 101 vd~iri~~~~~e~d~~~~~i~-~ak~~G~~-v~~~l~~s~--~~~~e~l~~~a~~~~~~G-a~~i~i~DT~G~~~P~~v~ 175 (333)
T TIGR03217 101 ARTVRVATHCTEADVSEQHIG-MARELGMD-TVGFLMMSH--MTPPEKLAEQAKLMESYG-ADCVYIVDSAGAMLPDDVR 175 (333)
T ss_pred CCEEEEEeccchHHHHHHHHH-HHHHcCCe-EEEEEEccc--CCCHHHHHHHHHHHHhcC-CCEEEEccCCCCCCHHHHH
Confidence 000 11112233333333 33445542 222222221 223445556666666655 44566665 4455555
Q ss_pred HHhhc----CCceEEeeecCccccch-hhhHHHHHHHhCCeEEecccCccccCCCC
Q 025500 171 RAHAV----HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRGFFGGK 221 (252)
Q Consensus 171 ~~~~~----~~~~~~q~~~~~~~~~~-~~~l~~~~~~~gi~v~a~spl~~G~L~~~ 221 (252)
++... .+++ +++.+|.-+.-- .-.-.-.+-+.|+..+--+-.+.|.-.|.
T Consensus 176 ~~v~~l~~~l~~~-i~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~G~G~~aGN 230 (333)
T TIGR03217 176 DRVRALKAVLKPE-TQVGFHAHHNLSLAVANSIAAIEAGATRIDASLRGLGAGAGN 230 (333)
T ss_pred HHHHHHHHhCCCC-ceEEEEeCCCCchHHHHHHHHHHhCCCEEEeecccccccccC
Confidence 44332 2211 344554433321 01122234468888887777777765554
No 175
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=47.63 E-value=1.9e+02 Score=25.16 Aligned_cols=94 Identities=13% Similarity=0.053 Sum_probs=53.3
Q ss_pred CCCEEEEeccCccCCCCcccccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCC----------CHHHHHHHHHHHH
Q 025500 82 REKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV----------PIEETIGEMKKLV 151 (252)
Q Consensus 82 R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~----------~~~~~~~~L~~l~ 151 (252)
..++.|..|+....... ...+.+... .+-+.|+..|+|++++ +...... .....++.+..++
T Consensus 206 g~d~~i~vris~~~~~~----~g~~~~e~~-~la~~l~~~G~d~i~v---s~g~~~~~~~~~~~~~~~~~~~~~~~~~ir 277 (327)
T cd02803 206 GPDFPVGVRLSADDFVP----GGLTLEEAI-EIAKALEEAGVDALHV---SGGSYESPPPIIPPPYVPEGYFLELAEKIK 277 (327)
T ss_pred CCCceEEEEechhccCC----CCCCHHHHH-HHHHHHHHcCCCEEEe---CCCCCcccccccCCCCCCcchhHHHHHHHH
Confidence 35678888887543110 013344433 3444567778766554 3322111 0122345566666
Q ss_pred HcCCccEEEccCCC-HHHHHHHhhcCCceEEee
Q 025500 152 EEGKIKYIGLSEAS-PGTIRRAHAVHPITAVQM 183 (252)
Q Consensus 152 ~~G~ir~iGvs~~~-~~~l~~~~~~~~~~~~q~ 183 (252)
+.=.+.-++..+.. .+.++++++....+.+++
T Consensus 278 ~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~i 310 (327)
T cd02803 278 KAVKIPVIAVGGIRDPEVAEEILAEGKADLVAL 310 (327)
T ss_pred HHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeee
Confidence 66567777777754 888888887766676666
No 176
>PRK15108 biotin synthase; Provisional
Probab=47.49 E-value=2.1e+02 Score=25.52 Aligned_cols=105 Identities=13% Similarity=0.179 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEeCcCCc-CC-CcHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHHH
Q 025500 38 VSEEDGISMIKHAFSKGITFFDTADVY-GQ-NANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCE 115 (252)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta~~Y-g~-g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (252)
.+.++..+..+.+.+.|++.|-....+ ++ ...-+.+-+.++.++...+.++.-.+. .+.+.+
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~v~~s~G~-----------ls~e~l----- 139 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLETCMTLGT-----------LSESQA----- 139 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCCCEEEEeCCc-----------CCHHHH-----
Confidence 578999999999999999987432221 11 122355666666533323333322331 233333
Q ss_pred HHHHHcCCCcccEEEccCC------CCCCCHHHHHHHHHHHHHcCCccE
Q 025500 116 ASLKRLDVDYIDLYYQHRV------DTSVPIEETIGEMKKLVEEGKIKY 158 (252)
Q Consensus 116 ~sL~~Lg~d~iDl~~lh~~------~~~~~~~~~~~~L~~l~~~G~ir~ 158 (252)
+-|+..|+|++-+-+=-.| -.....++.++.++.+++.|.--.
T Consensus 140 ~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~ 188 (345)
T PRK15108 140 QRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVC 188 (345)
T ss_pred HHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCcee
Confidence 3356667765433211111 112357788999999999997433
No 177
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=47.15 E-value=1.5e+02 Score=27.42 Aligned_cols=60 Identities=17% Similarity=0.283 Sum_probs=36.4
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEc-cCCC----------CCC-CHH---HHHH-HHHHHHHcCCccEEEccCCCH
Q 025500 105 GAPDYVRSCCEASLKRLDVDYIDLYYQ-HRVD----------TSV-PIE---ETIG-EMKKLVEEGKIKYIGLSEASP 166 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~l-h~~~----------~~~-~~~---~~~~-~L~~l~~~G~ir~iGvs~~~~ 166 (252)
-+.+.+.+.++..++ ++.+++.++.+ +.|. ... +.+ +.++ +.+.|.+.|- ..+++++|..
T Consensus 215 qt~e~~~~tl~~~~~-l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy-~~~~~~~fa~ 290 (455)
T TIGR00538 215 QTKESFAKTLEKVAE-LNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGY-QFIGMDHFAK 290 (455)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCC-EEEeccceeC
Confidence 467888888876655 89999999877 2221 001 112 2233 3445556665 6699999874
No 178
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=47.15 E-value=2e+02 Score=25.26 Aligned_cols=115 Identities=11% Similarity=0.011 Sum_probs=72.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEeCcCCcCC------CcHHH----HHHHHH------h-c-CCCCCEEEEeccCccCCCC-
Q 025500 38 VSEEDGISMIKHAFSKGITFFDTADVYGQ------NANEV----LLGKAL------K-Q-LPREKIQVATKFGIAGIGV- 98 (252)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~------g~se~----~ig~~l------~-~-~~R~~~~i~tK~~~~~~~~- 98 (252)
+.++...++=+..+++|-..|.|--.-+. +.-|. +-.++. . + ..+.+.||.--+++.....
T Consensus 50 T~Pd~I~~IH~aY~eAGADiIeTNTFgat~i~lady~led~v~~in~~aa~iAR~aA~~~~~~k~rfVaGsiGPt~k~~~ 129 (311)
T COG0646 50 TKPDVIEAIHRAYIEAGADIIETNTFGATTIKLADYGLEDKVYEINQKAARIARRAADEAGDPKPRFVAGSIGPTNKTLS 129 (311)
T ss_pred CCcHHHHHHHHHHHhccCcEEEecCCCcchhhHhhhChHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEeccCcCCcCC
Confidence 46788889999999999999998642221 11222 111111 1 1 1125788888888766321
Q ss_pred cccccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHH
Q 025500 99 AGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVE 152 (252)
Q Consensus 99 ~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~ 152 (252)
....+..+.+.+.++..++.+-|=-.=+|++++.-..+......++.+.++..+
T Consensus 130 ~~~~~~v~fd~l~~ay~eq~~~Li~gG~D~iLiET~~D~l~~KaA~~a~~~~~~ 183 (311)
T COG0646 130 ISPDFAVTFDELVEAYREQVEGLIDGGADLILIETIFDTLNAKAAVFAAREVFE 183 (311)
T ss_pred cCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEehhccHHHHHHHHHHHHHHHH
Confidence 111025789999999999999988888999999887554344444444444443
No 179
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=46.91 E-value=68 Score=28.78 Aligned_cols=88 Identities=10% Similarity=0.191 Sum_probs=55.1
Q ss_pred EEEccCCCCC-----------CCHHHHHHHHHHHHH-cCC---ccEEEccC--CCHHHHHHH---hhcCCceEEeeecCc
Q 025500 128 LYYQHRVDTS-----------VPIEETIGEMKKLVE-EGK---IKYIGLSE--ASPGTIRRA---HAVHPITAVQMEWSL 187 (252)
Q Consensus 128 l~~lh~~~~~-----------~~~~~~~~~L~~l~~-~G~---ir~iGvs~--~~~~~l~~~---~~~~~~~~~q~~~~~ 187 (252)
.+.||.++++ .+++++++++.++.+ .|+ |+++=+.+ .+.++++++ +...++.++-++||+
T Consensus 218 aiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp 297 (355)
T TIGR00048 218 AISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNP 297 (355)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEeccc
Confidence 3778998642 236788888877654 443 44444433 344555554 333456788889998
Q ss_pred cccc-----hh---hhHHHHHHHhCCeEEecccCcc
Q 025500 188 WTRD-----IE---EEIIPLCRELGIGIVPYSPLGR 215 (252)
Q Consensus 188 ~~~~-----~~---~~l~~~~~~~gi~v~a~spl~~ 215 (252)
+... .. ..+.+..+++|+.|......+.
T Consensus 298 ~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~ 333 (355)
T TIGR00048 298 FPEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGD 333 (355)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 6531 11 3456667788999998887753
No 180
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=46.69 E-value=2e+02 Score=25.25 Aligned_cols=80 Identities=21% Similarity=0.258 Sum_probs=52.7
Q ss_pred CCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEE
Q 025500 80 LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYI 159 (252)
Q Consensus 80 ~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~i 159 (252)
..++.+.++.|....++ ...+.+.+++..+.+|. ++.+ ..+. ..+.+...+.++.+..+| +..|
T Consensus 21 ~~~~~i~~v~k~~~~pf----------~~~~~~Gi~~aa~~~G~---~v~~-~~~~-~~d~~~q~~~i~~li~~~-vdgI 84 (336)
T PRK15408 21 QAAERIAFIPKLVGVGF----------FTSGGNGAKEAGKELGV---DVTY-DGPT-EPSVSGQVQLINNFVNQG-YNAI 84 (336)
T ss_pred cCCcEEEEEECCCCCHH----------HHHHHHHHHHHHHHhCC---EEEE-ECCC-CCCHHHHHHHHHHHHHcC-CCEE
Confidence 35677888888654321 45678889999999985 4443 2332 234556678889988875 8888
Q ss_pred EccCCCHH----HHHHHhhc
Q 025500 160 GLSEASPG----TIRRAHAV 175 (252)
Q Consensus 160 Gvs~~~~~----~l~~~~~~ 175 (252)
-++..+.+ .++++.+.
T Consensus 85 iv~~~d~~al~~~l~~a~~~ 104 (336)
T PRK15408 85 IVSAVSPDGLCPALKRAMQR 104 (336)
T ss_pred EEecCCHHHHHHHHHHHHHC
Confidence 88876654 44444443
No 181
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=46.29 E-value=2.6e+02 Score=26.35 Aligned_cols=140 Identities=18% Similarity=0.222 Sum_probs=81.9
Q ss_pred HHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCC-CCCHHHHHHHHH
Q 025500 70 EVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT-SVPIEETIGEMK 148 (252)
Q Consensus 70 e~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~-~~~~~~~~~~L~ 148 (252)
-+-+|.+|+ .+.+++|+-.+...+ .....+..-+.+.+++-++. ..-+.+.--+. ..+.......+.
T Consensus 341 ~~dlG~~L~--~~~~l~VsINl~a~D---------l~s~rli~~~~~~l~~~~v~-pqQI~lElTER~f~D~~~~~~iI~ 408 (524)
T COG4943 341 FRDLGDLLR--QHRDLHVSINLSASD---------LASPRLIDRLNRKLAQYQVR-PQQIALELTERTFADPKKMTPIIL 408 (524)
T ss_pred HHHhHHHHH--hCcceEEEEeeeehh---------hcCchHHHHHHHHHHhcCcC-hHHheeehhhhhhcCchhhhHHHH
Confidence 355677777 566778877776544 44556777888888888873 23333322211 123344667788
Q ss_pred HHHHcCCccEEEccCCCH--HHHHHHhhcCCceEEee--------ecCccccchhhhHHHHHHHhCCeEEec--------
Q 025500 149 KLVEEGKIKYIGLSEASP--GTIRRAHAVHPITAVQM--------EWSLWTRDIEEEIIPLCRELGIGIVPY-------- 210 (252)
Q Consensus 149 ~l~~~G~ir~iGvs~~~~--~~l~~~~~~~~~~~~q~--------~~~~~~~~~~~~l~~~~~~~gi~v~a~-------- 210 (252)
.++++|.--+| -+|+. +.|..+.+ -++|..-+ .++.......+-+++.||++|+.+++=
T Consensus 409 r~ReaG~~IyI--DDFGTGYSnL~YLq~-L~VDaLKIDKsFvdtlg~~~a~~~I~~hII~MAk~L~L~iVaEGVEteeQ~ 485 (524)
T COG4943 409 RLREAGHEIYI--DDFGTGYSNLHYLQS-LPVDALKIDKSFVDTLGTDSASHLIAPHIIEMAKSLGLKIVAEGVETEEQV 485 (524)
T ss_pred HHHhcCCeEEE--ccCcCcchhHHHHhh-CCccceeccHHHHHhhccCcccchhHHHHHHHHHHcCCcEEeecccHHHHH
Confidence 99999984444 33322 11222222 22232222 222222323367899999999988864
Q ss_pred -------ccCccccCCCCCCC
Q 025500 211 -------SPLGRGFFGGKAVV 224 (252)
Q Consensus 211 -------spl~~G~L~~~~~~ 224 (252)
-++|+|.|.+|..+
T Consensus 486 ~~LR~~Gv~~gQGW~fskaLp 506 (524)
T COG4943 486 DWLRKRGVHYGQGWLFSKALP 506 (524)
T ss_pred HHHHHcCCccccccccCCCCC
Confidence 46899999988654
No 182
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=46.20 E-value=1.6e+02 Score=27.18 Aligned_cols=72 Identities=24% Similarity=0.406 Sum_probs=44.8
Q ss_pred HHHHHHHHHHcCC-ccEEEccCCC---HHHHHHHhhcC-C---ceEEeeecCccccchhhhHHHHHHHhCCeEEecccCc
Q 025500 143 TIGEMKKLVEEGK-IKYIGLSEAS---PGTIRRAHAVH-P---ITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLG 214 (252)
Q Consensus 143 ~~~~L~~l~~~G~-ir~iGvs~~~---~~~l~~~~~~~-~---~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~ 214 (252)
+....+.++++|. |+++.+.+-. .+.++++++.. . ++.+..+.....+ -+++...|++.||.|++-..-+
T Consensus 144 v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~P--v~EI~~icr~~~v~v~~DaAQa 221 (428)
T KOG1549|consen 144 VLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQP--VKEIVKICREEGVQVHVDAAQA 221 (428)
T ss_pred hhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCcccccc--HHHHHHHhCcCCcEEEeehhhh
Confidence 4556677788886 7888888644 44555555431 1 2222222223222 3889999999999888776666
Q ss_pred cc
Q 025500 215 RG 216 (252)
Q Consensus 215 ~G 216 (252)
-|
T Consensus 222 vG 223 (428)
T KOG1549|consen 222 VG 223 (428)
T ss_pred cC
Confidence 55
No 183
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=46.14 E-value=1.9e+02 Score=24.86 Aligned_cols=114 Identities=12% Similarity=0.093 Sum_probs=63.9
Q ss_pred ChHHHHHHHHHHHH---HcCCCcccEEEccCCCC-CCCHHHHHHHHHHHHHcCCccEEEccC----CCHHHHHHHhhcC-
Q 025500 106 APDYVRSCCEASLK---RLDVDYIDLYYQHRVDT-SVPIEETIGEMKKLVEEGKIKYIGLSE----ASPGTIRRAHAVH- 176 (252)
Q Consensus 106 ~~~~i~~~~~~sL~---~Lg~d~iDl~~lh~~~~-~~~~~~~~~~L~~l~~~G~ir~iGvs~----~~~~~l~~~~~~~- 176 (252)
+++...+.+.+..+ ..|. ++.+.+-+.... ..+.+.+.+..+++.+.| +..|.+++ .++.++.++....
T Consensus 109 t~~e~l~~~~~~i~~a~~~G~-~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G-~~~i~l~DT~G~~~P~~v~~l~~~l~ 186 (280)
T cd07945 109 TPEEHFADIREVIEYAIKNGI-EVNIYLEDWSNGMRDSPDYVFQLVDFLSDLP-IKRIMLPDTLGILSPFETYTYISDMV 186 (280)
T ss_pred CHHHHHHHHHHHHHHHHhCCC-EEEEEEEeCCCCCcCCHHHHHHHHHHHHHcC-CCEEEecCCCCCCCHHHHHHHHHHHH
Confidence 45555444444443 3454 566666653221 345667777778888887 67888887 4566666654331
Q ss_pred -CceEEeeecCccccc-hhhhHHHHHHHhCCeEEecccCccccCCCC
Q 025500 177 -PITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRGFFGGK 221 (252)
Q Consensus 177 -~~~~~q~~~~~~~~~-~~~~l~~~~~~~gi~v~a~spl~~G~L~~~ 221 (252)
.+.-+.+.+|..+.. ....-.-.|-+.|+..+--+-.+-|--+|.
T Consensus 187 ~~~~~~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd~s~~GlGe~aGN 233 (280)
T cd07945 187 KRYPNLHFDFHAHNDYDLAVANVLAAVKAGIKGLHTTVNGLGERAGN 233 (280)
T ss_pred hhCCCCeEEEEeCCCCCHHHHHHHHHHHhCCCEEEEecccccccccC
Confidence 111133445544432 112333345688999988887777754443
No 184
>PLN02389 biotin synthase
Probab=46.08 E-value=2.3e+02 Score=25.67 Aligned_cols=101 Identities=18% Similarity=0.223 Sum_probs=57.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEeCcC----CcCCCcHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHH
Q 025500 38 VSEEDGISMIKHAFSKGITFFDTAD----VYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSC 113 (252)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta~----~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~ 113 (252)
.+.++..+..+.+.+.|++.|-... ..+.-..-+.+-+.++.++...+.|....+.. +.+.+
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~l-----------~~E~l--- 181 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGML-----------EKEQA--- 181 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCCC-----------CHHHH---
Confidence 5889999999999999999774321 11110123455556665443345555444321 23322
Q ss_pred HHHHHHHcCCCcccEEEccC-C------CCCCCHHHHHHHHHHHHHcCC
Q 025500 114 CEASLKRLDVDYIDLYYQHR-V------DTSVPIEETIGEMKKLVEEGK 155 (252)
Q Consensus 114 ~~~sL~~Lg~d~iDl~~lh~-~------~~~~~~~~~~~~L~~l~~~G~ 155 (252)
+.|+.-|+|++-.-+ .. + -.....++.++.++.+++.|.
T Consensus 182 --~~LkeAGld~~~~~L-eTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi 227 (379)
T PLN02389 182 --AQLKEAGLTAYNHNL-DTSREYYPNVITTRSYDDRLETLEAVREAGI 227 (379)
T ss_pred --HHHHHcCCCEEEeee-cCChHHhCCcCCCCCHHHHHHHHHHHHHcCC
Confidence 335555776643321 21 1 012357788999999999985
No 185
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=45.99 E-value=2.2e+02 Score=25.46 Aligned_cols=133 Identities=17% Similarity=0.220 Sum_probs=77.2
Q ss_pred CCHHHHHHHHHHHHHCC-CCEEeCcCCcCCCcHHHHHHHHHhcCC-CCCEEEEeccCccCCCCcccccCCChHHHHHHHH
Q 025500 38 VSEEDGISMIKHAFSKG-ITFFDTADVYGQNANEVLLGKALKQLP-REKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCE 115 (252)
Q Consensus 38 ~~~~~~~~~l~~A~~~G-in~~Dta~~Yg~g~se~~ig~~l~~~~-R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (252)
.+.++..+.-+.|-+.| .+|...|..++.|+.-+.+-+.++.+. --.+-+..-+|. .+.+...
T Consensus 84 ~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~le~c~slG~-----------l~~eq~~---- 148 (335)
T COG0502 84 MEVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEELGLEVCASLGM-----------LTEEQAE---- 148 (335)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhcCcHHhhccCC-----------CCHHHHH----
Confidence 57788888889999999 888888888863344445555555422 222444444442 2343333
Q ss_pred HHHHHcCCCcccEEEccCCCC----------CCCHHHHHHHHHHHHHcCCccE----EEccCCCHHHHHHHhhcCCce-E
Q 025500 116 ASLKRLDVDYIDLYYQHRVDT----------SVPIEETIGEMKKLVEEGKIKY----IGLSEASPGTIRRAHAVHPIT-A 180 (252)
Q Consensus 116 ~sL~~Lg~d~iDl~~lh~~~~----------~~~~~~~~~~L~~l~~~G~ir~----iGvs~~~~~~l~~~~~~~~~~-~ 180 (252)
-|..-|+|+. -|+.+. ....++-++.++.+++.|.=-. +|+..-..+.++-+.....+. .
T Consensus 149 -~L~~aGvd~y----nhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~p 223 (335)
T COG0502 149 -KLADAGVDRY----NHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPTP 223 (335)
T ss_pred -HHHHcChhhe----ecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCCC
Confidence 3566676652 354433 2357889999999999987433 355554444444443332111 3
Q ss_pred EeeecCcccc
Q 025500 181 VQMEWSLWTR 190 (252)
Q Consensus 181 ~q~~~~~~~~ 190 (252)
-.+++|.+++
T Consensus 224 dsVPIn~l~P 233 (335)
T COG0502 224 DSVPINFLNP 233 (335)
T ss_pred CeeeeeeecC
Confidence 3445554443
No 186
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=45.73 E-value=49 Score=27.72 Aligned_cols=101 Identities=19% Similarity=0.159 Sum_probs=58.8
Q ss_pred cCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHc----CCccEEEccC--CCHHHHHHHhhcC
Q 025500 103 VKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEE----GKIKYIGLSE--ASPGTIRRAHAVH 176 (252)
Q Consensus 103 ~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~----G~ir~iGvs~--~~~~~l~~~~~~~ 176 (252)
++.+++.+.+-+.+.-+.-.. .+ +.+..|-+..+.++++++|.+|++. |----|=.-. .+.+.+++.....
T Consensus 84 f~~d~~~~adYl~~l~~aA~P--~~-L~iEgP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~da~ 160 (248)
T PF07476_consen 84 FDNDPDRMADYLAELEEAAAP--FK-LRIEGPMDAGSREAQIEALAELREELDRRGINVEIVADEWCNTLEDIREFADAK 160 (248)
T ss_dssp TTT-HHHHHHHHHHHHHHHTT--S--EEEE-SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHHTT
T ss_pred hCCCHHHHHHHHHHHHHhcCC--Ce-eeeeCCcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHhcC
Confidence 345677777777776666654 23 4567776666777788887776654 3322233333 3567888888777
Q ss_pred CceEEeeec---CccccchhhhHHHHHHHhCCeEE
Q 025500 177 PITAVQMEW---SLWTRDIEEEIIPLCRELGIGIV 208 (252)
Q Consensus 177 ~~~~~q~~~---~~~~~~~~~~l~~~~~~~gi~v~ 208 (252)
.-+.+|+.- .-.+.. -+.+-+|+++|++..
T Consensus 161 A~dmVQIKtPDLGgi~nt--ieAvlyCk~~gvgaY 193 (248)
T PF07476_consen 161 AADMVQIKTPDLGGINNT--IEAVLYCKEHGVGAY 193 (248)
T ss_dssp -SSEEEE-GGGGSSTHHH--HHHHHHHHHTT-EEE
T ss_pred CcCEEEecCCCccchhhH--HHHHHHHHhcCCcee
Confidence 788899853 222221 567889999999864
No 187
>PRK09389 (R)-citramalate synthase; Provisional
Probab=45.66 E-value=2.2e+02 Score=26.79 Aligned_cols=25 Identities=8% Similarity=0.315 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEeCcC
Q 025500 38 VSEEDGISMIKHAFSKGITFFDTAD 62 (252)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta~ 62 (252)
++.++..++.+...+.||..|+...
T Consensus 21 ~s~e~K~~ia~~L~~~Gv~~IE~G~ 45 (488)
T PRK09389 21 LTPEEKLEIARKLDELGVDVIEAGS 45 (488)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 3789999999999999999999863
No 188
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=45.51 E-value=2.4e+02 Score=25.62 Aligned_cols=89 Identities=12% Similarity=0.209 Sum_probs=58.7
Q ss_pred EEEccCCCCC-----------CCHHHHHHHHHHHHHc-CC---ccEEEcc--CCCHHHHHHHhhc---C------CceEE
Q 025500 128 LYYQHRVDTS-----------VPIEETIGEMKKLVEE-GK---IKYIGLS--EASPGTIRRAHAV---H------PITAV 181 (252)
Q Consensus 128 l~~lh~~~~~-----------~~~~~~~~~L~~l~~~-G~---ir~iGvs--~~~~~~l~~~~~~---~------~~~~~ 181 (252)
.+.||.|+++ .+++++++++.+..+. |+ +-++=+. |.+.++.+++.+. . +..++
T Consensus 231 AiSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VN 310 (371)
T PRK14461 231 AISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVN 310 (371)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEE
Confidence 4678999653 3578899999888654 33 2223222 4566665555443 4 56888
Q ss_pred eeecCccccc------h--hhhHHHHHHHhCCeEEecccCccc
Q 025500 182 QMEWSLWTRD------I--EEEIIPLCRELGIGIVPYSPLGRG 216 (252)
Q Consensus 182 q~~~~~~~~~------~--~~~l~~~~~~~gi~v~a~spl~~G 216 (252)
-++||+.... . -....+..+++||.+......+.-
T Consensus 311 LIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~D 353 (371)
T PRK14461 311 LIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGVE 353 (371)
T ss_pred EecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcC
Confidence 9999986531 1 156677788999999999887543
No 189
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=45.37 E-value=85 Score=26.12 Aligned_cols=74 Identities=16% Similarity=0.194 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCC-CcHHHHHHHHHhcC-CCCCEEEEeccCccCCCCcccccCCChHHHHHHHHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQ-NANEVLLGKALKQL-PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEA 116 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~-g~se~~ig~~l~~~-~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (252)
++++..++.+.+.++|..|+=|+..|+. |.+.+.+....+.. .+-.+..+--+ .+.+...+-++.
T Consensus 134 ~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~~~~~~~IKasGGI-------------rt~~~a~~~i~a 200 (221)
T PRK00507 134 TDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRETVGPRVGVKASGGI-------------RTLEDALAMIEA 200 (221)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhCCCceEEeeCCc-------------CCHHHHHHHHHc
Confidence 6788999999999999999999998864 45666655444422 22222222111 246777777777
Q ss_pred HHHHcCCCc
Q 025500 117 SLKRLDVDY 125 (252)
Q Consensus 117 sL~~Lg~d~ 125 (252)
--.|+|+++
T Consensus 201 GA~riGtS~ 209 (221)
T PRK00507 201 GATRLGTSA 209 (221)
T ss_pred CcceEccCc
Confidence 777777753
No 190
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=45.37 E-value=91 Score=28.95 Aligned_cols=89 Identities=16% Similarity=0.163 Sum_probs=56.0
Q ss_pred HHHHcCCCcccEEEccCCCC-CCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhc-------CC-ceEEeeecCc
Q 025500 117 SLKRLDVDYIDLYYQHRVDT-SVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV-------HP-ITAVQMEWSL 187 (252)
Q Consensus 117 sL~~Lg~d~iDl~~lh~~~~-~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~-------~~-~~~~q~~~~~ 187 (252)
.++.+|+.|. ++.-|.. ... ..+-...+-+.|-..++|....+++++++.+.. .+ |.+|-+ .++
T Consensus 11 f~~~lgiryP---iiqgpMa~GiS---s~eLVaAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~-~~~ 83 (444)
T TIGR02814 11 FREDYGVRYA---YVAGAMANGIA---SAELVIAMGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLI-HSP 83 (444)
T ss_pred HHHHhCCCCc---EECccccCCCC---CHHHHHHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEec-ccC
Confidence 4566777654 2233322 122 223345566889999999999999988776543 24 665553 222
Q ss_pred cccchhhhHHHHHHHhCCeEEeccc
Q 025500 188 WTRDIEEEIIPLCRELGIGIVPYSP 212 (252)
Q Consensus 188 ~~~~~~~~l~~~~~~~gi~v~a~sp 212 (252)
-++..+.++++.|.++++.++..+-
T Consensus 84 ~~~~~e~~~v~l~l~~~V~~veasa 108 (444)
T TIGR02814 84 SDPALEWGLVDLLLRHGVRIVEASA 108 (444)
T ss_pred CCcccHHHHHHHHHHcCCCEEEecc
Confidence 2232346789999999999887654
No 191
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=45.34 E-value=63 Score=26.49 Aligned_cols=93 Identities=18% Similarity=0.208 Sum_probs=56.1
Q ss_pred HHHHcCCCcccEEEcc-CCCC-CCCHHH----HHHHHHHHHHcCCccEEEccCCCHHHHHHHhhcCCceEEeeecCcccc
Q 025500 117 SLKRLDVDYIDLYYQH-RVDT-SVPIEE----TIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTR 190 (252)
Q Consensus 117 sL~~Lg~d~iDl~~lh-~~~~-~~~~~~----~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~ 190 (252)
.+..-|.++||+-.-- +|.. ..+.++ +...++.+++...=--|.+-+++++.++++++. ..+++-...+ +..
T Consensus 27 ~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~~~~v~~~aL~~-g~~~ind~~~-~~~ 104 (210)
T PF00809_consen 27 EQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDTFNPEVAEAALKA-GADIINDISG-FED 104 (210)
T ss_dssp HHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHH-TSSEEEETTT-TSS
T ss_pred HHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEECCCHHHHHHHHHc-CcceEEeccc-ccc
Confidence 3456788999997543 2322 122233 444455555411122477888999999999887 3333222222 111
Q ss_pred chhhhHHHHHHHhCCeEEecccC
Q 025500 191 DIEEEIIPLCRELGIGIVPYSPL 213 (252)
Q Consensus 191 ~~~~~l~~~~~~~gi~v~a~spl 213 (252)
.+++++.++++|..++++.--
T Consensus 105 --~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 105 --DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp --STTHHHHHHHHTSEEEEESES
T ss_pred --cchhhhhhhcCCCEEEEEecc
Confidence 278999999999999988766
No 192
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=45.29 E-value=2.2e+02 Score=25.48 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=18.3
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEcc
Q 025500 105 GAPDYVRSCCEASLKRLDVDYIDLYYQH 132 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh 132 (252)
-+.+.+.+.++..+ +++.+++.++.+.
T Consensus 172 qt~~~~~~tl~~~~-~l~~~~i~~y~l~ 198 (375)
T PRK05628 172 ESDDDWRASLDAAL-EAGVDHVSAYALI 198 (375)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEeeeee
Confidence 45667777666544 4788888877765
No 193
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=45.06 E-value=2.1e+02 Score=24.91 Aligned_cols=105 Identities=13% Similarity=0.068 Sum_probs=53.1
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCC-CHHHHHHHhhcCCceEEeee
Q 025500 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-SPGTIRRAHAVHPITAVQME 184 (252)
Q Consensus 106 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~~ 184 (252)
+++.+.+.++..++ .+-+.+--+-++......+.+.....++..++.|+--.+=++.. +.+....++.......+---
T Consensus 138 ~~~~~~~~~~~~~~-~~~~~vvg~~l~~~e~~~~~~~~~~~~~~A~~~g~~i~~Ha~E~~~~~~~~~~~~~~g~~ri~Hg 216 (324)
T TIGR01430 138 QPEAAEETLELAKP-YKEQTIVGFGLAGDERGGPPPDFVRAFAIARELGLHLTVHAGELGGPESVREALDDLGATRIGHG 216 (324)
T ss_pred CHHHHHHHHHHHHh-hccCcEEEecCCCCCCCCCHHHHHHHHHHHHHCCCCeEEecCCCCChHHHHHHHHHcCchhcchh
Confidence 46677777777665 33222222233433223335556677777888887666666543 23334443322111111000
Q ss_pred cCccccchhhhHHHHHHHhCCeEEecccCcc
Q 025500 185 WSLWTRDIEEEIIPLCRELGIGIVPYSPLGR 215 (252)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~ 215 (252)
+++. ..++.++..+++|+.+.. .|..+
T Consensus 217 ~~l~---~~~~~i~~l~~~gi~v~~-cP~Sn 243 (324)
T TIGR01430 217 VRAL---EDPELLKRLAQENITLEV-CPTSN 243 (324)
T ss_pred hhhc---cCHHHHHHHHHcCceEEE-CCccc
Confidence 1111 125689999999988754 44443
No 194
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=44.79 E-value=99 Score=25.22 Aligned_cols=85 Identities=12% Similarity=0.059 Sum_probs=50.2
Q ss_pred cccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhcCCceEEeeecC-ccccchhhhHHHHHHHh
Q 025500 125 YIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQMEWS-LWTRDIEEEIIPLCREL 203 (252)
Q Consensus 125 ~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~-~~~~~~~~~l~~~~~~~ 203 (252)
-..+..+.+.. .-+...+|.+.|. ..+-+.-.+.+.|.++++-....++-+... .........++++|++.
T Consensus 22 ~~~V~~l~R~~-------~~~~~~~l~~~g~-~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~a 93 (233)
T PF05368_consen 22 GFSVRALVRDP-------SSDRAQQLQALGA-EVVEADYDDPESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAA 93 (233)
T ss_dssp TGCEEEEESSS-------HHHHHHHHHHTTT-EEEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEecc-------chhhhhhhhcccc-eEeecccCCHHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhcc
Confidence 35666666543 1122455666666 456666667888888877444333333322 11112237799999999
Q ss_pred CCeEEecccCcccc
Q 025500 204 GIGIVPYSPLGRGF 217 (252)
Q Consensus 204 gi~v~a~spl~~G~ 217 (252)
||..+.+|-++...
T Consensus 94 gVk~~v~ss~~~~~ 107 (233)
T PF05368_consen 94 GVKHFVPSSFGADY 107 (233)
T ss_dssp T-SEEEESEESSGT
T ss_pred ccceEEEEEecccc
Confidence 99999999988665
No 195
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=44.65 E-value=1.9e+02 Score=24.18 Aligned_cols=88 Identities=9% Similarity=0.026 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHH-HHHcCCccEEEccC-CCHHHHHHHhhcC-CceEEee
Q 025500 107 PDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKK-LVEEGKIKYIGLSE-ASPGTIRRAHAVH-PITAVQM 183 (252)
Q Consensus 107 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~-l~~~G~ir~iGvs~-~~~~~l~~~~~~~-~~~~~q~ 183 (252)
++... .+-+.|-+-|+..+.+-+ ......+.++.|.+ ..++.-=-.||+.+ .+.++.+.+.+.+ .|-
T Consensus 26 ~~~a~-~~~~al~~gGi~~iEiT~-----~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~Fi---- 95 (222)
T PRK07114 26 VEVAK-KVIKACYDGGARVFEFTN-----RGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFI---- 95 (222)
T ss_pred HHHHH-HHHHHHHHCCCCEEEEeC-----CCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEE----
Confidence 44443 455567777876666544 11223345555532 22332223589888 6788888888763 331
Q ss_pred ecCccccchhhhHHHHHHHhCCeEE
Q 025500 184 EWSLWTRDIEEEIIPLCRELGIGIV 208 (252)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~~gi~v~ 208 (252)
.++ ....+++++|+++|+.++
T Consensus 96 -VsP---~~~~~v~~~~~~~~i~~i 116 (222)
T PRK07114 96 -VTP---LFNPDIAKVCNRRKVPYS 116 (222)
T ss_pred -ECC---CCCHHHHHHHHHcCCCEe
Confidence 222 223789999999999877
No 196
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=44.58 E-value=2.4e+02 Score=25.45 Aligned_cols=99 Identities=15% Similarity=0.105 Sum_probs=59.7
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCC-ccEEEccCCCHHHHHHHhhcCCceEEe
Q 025500 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPGTIRRAHAVHPITAVQ 182 (252)
Q Consensus 104 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q 182 (252)
.++.+... .+-+.|.++|+++|++- +|... ++-++.++.+.+.|. .+-++.+-.....++.+.+. .++.+.
T Consensus 22 ~~s~e~k~-~ia~~L~~~GV~~IE~G---~p~~~---~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~-g~~~i~ 93 (378)
T PRK11858 22 VFTNEEKL-AIARMLDEIGVDQIEAG---FPAVS---EDEKEAIKAIAKLGLNASILALNRAVKSDIDASIDC-GVDAVH 93 (378)
T ss_pred CCCHHHHH-HHHHHHHHhCCCEEEEe---CCCcC---hHHHHHHHHHHhcCCCeEEEEEcccCHHHHHHHHhC-CcCEEE
Confidence 45555444 55566999999999975 34322 223556666666554 45555555557778887764 344454
Q ss_pred eecCcccc--------------chhhhHHHHHHHhCCeEEec
Q 025500 183 MEWSLWTR--------------DIEEEIIPLCRELGIGIVPY 210 (252)
Q Consensus 183 ~~~~~~~~--------------~~~~~l~~~~~~~gi~v~a~ 210 (252)
+-+...+. ..-.+.+++|+++|+.|...
T Consensus 94 i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~ 135 (378)
T PRK11858 94 IFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFS 135 (378)
T ss_pred EEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 43333221 11156888999999987654
No 197
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=44.39 E-value=1.9e+02 Score=24.13 Aligned_cols=179 Identities=18% Similarity=0.121 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCC------CcHHHHHHHHHhcCCCCCEEEEeccCccCCC---Cc--c---cccC
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQ------NANEVLLGKALKQLPREKIQVATKFGIAGIG---VA--G---VIVK 104 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~------g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~---~~--~---~~~~ 104 (252)
+.++..++++...+.||..|+....-.. ...++.+.+..+..++..+.+.++.+..... .. . ...+
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g~~~i~i~~~ 96 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAGVDEVRIFDS 96 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCCcCEEEEEEe
Confidence 6799999999999999999996543221 2244555544443333444333332211000 00 0 0000
Q ss_pred -----------CC----hHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccC----CC
Q 025500 105 -----------GA----PDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE----AS 165 (252)
Q Consensus 105 -----------~~----~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~----~~ 165 (252)
.+ .+.+.+.++. ++..|. .+.+............+++.+.++.+.+.| +..|.+.+ .+
T Consensus 97 ~s~~~~~~~~~~~~~~~~~~~~~~i~~-a~~~G~-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g-~~~i~l~Dt~G~~~ 173 (265)
T cd03174 97 ASETHSRKNLNKSREEDLENAEEAIEA-AKEAGL-EVEGSLEDAFGCKTDPEYVLEVAKALEEAG-ADEISLKDTVGLAT 173 (265)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHH-HHHCCC-eEEEEEEeecCCCCCHHHHHHHHHHHHHcC-CCEEEechhcCCcC
Confidence 11 2223333332 233443 233333222221134455566666666666 55555544 34
Q ss_pred HHHHHHHhhc---CCceEEeeecCccccch-hhhHHHHHHHhCCeEEecccCccccCCCC
Q 025500 166 PGTIRRAHAV---HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRGFFGGK 221 (252)
Q Consensus 166 ~~~l~~~~~~---~~~~~~q~~~~~~~~~~-~~~l~~~~~~~gi~v~a~spl~~G~L~~~ 221 (252)
++++.++.+. .... +.+.+|.-+..- ...-.-.|-+.|+..+--+-.+-|.-+|.
T Consensus 174 P~~v~~li~~l~~~~~~-~~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G~G~~~Gn 232 (265)
T cd03174 174 PEEVAELVKALREALPD-VPLGLHTHNTLGLAVANSLAALEAGADRVDGSVNGLGERAGN 232 (265)
T ss_pred HHHHHHHHHHHHHhCCC-CeEEEEeCCCCChHHHHHHHHHHcCCCEEEeccccccccccC
Confidence 5555554432 1111 444454433321 12222234467888887777777754444
No 198
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=44.29 E-value=68 Score=29.31 Aligned_cols=118 Identities=13% Similarity=0.049 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHCC----CCEEeCcCCcCC--CcHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHHH
Q 025500 42 DGISMIKHAFSKG----ITFFDTADVYGQ--NANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCE 115 (252)
Q Consensus 42 ~~~~~l~~A~~~G----in~~Dta~~Yg~--g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (252)
+.....+++-+.+ ++.-+|+.+|.. +.++. |-...=+++.||......... ..+..+..++++.++++
T Consensus 95 ~le~~~~r~~~~~~d~~~rL~~tsG~~~~lt~~~~~-----i~~~gvdev~~SVhtT~p~lR-~klm~n~~A~~~le~L~ 168 (414)
T COG1625 95 DLEPRGRRARLYYKDDDIRLSFTSGSGFTLTNRAER-----IIDAGVDEVYFSVHTTNPELR-AKLMKNPNAEQLLELLR 168 (414)
T ss_pred chhhhhhHHHhhcCCccceeeeeeccceeccchHHH-----HHHcCCCeeEEEEeeCCHHHH-HHHhcCCcHHHHHHHHH
Confidence 3345555666665 667776655542 23444 222445778887766543211 23445667888888888
Q ss_pred HHHHHc-CCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccE----EEccCCCH
Q 025500 116 ASLKRL-DVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKY----IGLSEASP 166 (252)
Q Consensus 116 ~sL~~L-g~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~----iGvs~~~~ 166 (252)
...++- .+ |.+++++-..++...+.++++-|+++-..+.+-. +|+.-++.
T Consensus 169 ~f~~~~~~v-~a~iVl~PGvNdge~L~kT~~dL~~~g~~~~~~~~~~pvGlt~~n~ 223 (414)
T COG1625 169 RFAERCIEV-HAQIVLCPGVNDGEELEKTLEDLEEWGAHEVILMRVVPVGLTRYNR 223 (414)
T ss_pred HHHHhhhhe-eeEEEEcCCcCcHHHHHHHHHHHHHhCcCceeEEEeecceeeecCC
Confidence 888886 55 8899999777766667777777777755555443 56665553
No 199
>TIGR00035 asp_race aspartate racemase.
Probab=44.07 E-value=1.2e+02 Score=25.06 Aligned_cols=68 Identities=12% Similarity=0.055 Sum_probs=45.3
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEccCCCCC-----------C-CHHHHHHHHHHHHHcCCccEEEccCCCHHH-HHH
Q 025500 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-----------V-PIEETIGEMKKLVEEGKIKYIGLSEASPGT-IRR 171 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-----------~-~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~-l~~ 171 (252)
.+.+..++-++..-.+.+.++++.+.+++|+.. . ....+.+.++.|.+. .+..|-++..+... +++
T Consensus 14 at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~-g~d~iviaCNTah~~~~~ 92 (229)
T TIGR00035 14 ATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENA-GADFIIMPCNTAHKFAED 92 (229)
T ss_pred HHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHc-CCCEEEECCccHHHHHHH
Confidence 355666666667767899999999999998541 1 122345566666655 47889888877655 344
Q ss_pred Hh
Q 025500 172 AH 173 (252)
Q Consensus 172 ~~ 173 (252)
+.
T Consensus 93 l~ 94 (229)
T TIGR00035 93 IQ 94 (229)
T ss_pred HH
Confidence 43
No 200
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=44.05 E-value=1.8e+02 Score=26.07 Aligned_cols=59 Identities=14% Similarity=0.067 Sum_probs=32.4
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEcc-CCCCC------------CCHH---HHH-HHHHHHHHcCCccEEEccCCC
Q 025500 105 GAPDYVRSCCEASLKRLDVDYIDLYYQH-RVDTS------------VPIE---ETI-GEMKKLVEEGKIKYIGLSEAS 165 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh-~~~~~------------~~~~---~~~-~~L~~l~~~G~ir~iGvs~~~ 165 (252)
-+.+.+.+.++.. .+++++++.++.+. .|... .+.+ +.+ .+.+.|.+.|- ..+++++|.
T Consensus 164 qt~~~~~~~l~~~-~~l~~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~~~~~~fa 239 (377)
T PRK08599 164 QTIEDFKESLAKA-LALDIPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGF-HQYEISNFA 239 (377)
T ss_pred CCHHHHHHHHHHH-HccCCCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCC-cEeeeeeee
Confidence 3566777766654 55888888777543 12100 0111 122 34566666675 457888875
No 201
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=43.72 E-value=1.9e+02 Score=25.94 Aligned_cols=97 Identities=19% Similarity=0.187 Sum_probs=59.4
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCC-ccEEEccCCCHHHHHHHhhcCCceEEe
Q 025500 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPGTIRRAHAVHPITAVQ 182 (252)
Q Consensus 104 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q 182 (252)
.++.+... .+-+.|.++|+++|++-+ |... ++-++.++.+.+.+. .+-.+.+....+.++.+.+.. ++.+.
T Consensus 18 ~~s~~~k~-~ia~~L~~~Gv~~IEvG~---p~~~---~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g-~~~i~ 89 (363)
T TIGR02090 18 SLTVEQKV-EIARKLDELGVDVIEAGF---PIAS---EGEFEAIKKISQEGLNAEICSLARALKKDIDKAIDCG-VDSIH 89 (363)
T ss_pred CCCHHHHH-HHHHHHHHcCCCEEEEeC---CCCC---hHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHHcC-cCEEE
Confidence 34555544 455669999999999753 3221 233677777766555 555566677788888887753 33444
Q ss_pred eecCc--cc------cc------hhhhHHHHHHHhCCeEE
Q 025500 183 MEWSL--WT------RD------IEEEIIPLCRELGIGIV 208 (252)
Q Consensus 183 ~~~~~--~~------~~------~~~~l~~~~~~~gi~v~ 208 (252)
+-+.. .+ .. .-.+.+++|+++|+.|.
T Consensus 90 i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~ 129 (363)
T TIGR02090 90 TFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVE 129 (363)
T ss_pred EEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 42222 11 11 11578889999998764
No 202
>PRK13753 dihydropteroate synthase; Provisional
Probab=43.63 E-value=2.2e+02 Score=24.70 Aligned_cols=102 Identities=16% Similarity=0.115 Sum_probs=67.6
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEccC-CCCC-CC----HHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhcCCc
Q 025500 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHR-VDTS-VP----IEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPI 178 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~-~~~~-~~----~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 178 (252)
.+.+.+.+..++.+ .-|.|.||+=---. |... .+ +..+...++.+++.+. -|.|-++.++.++++++.+-
T Consensus 22 ~~~d~a~~~a~~m~-~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~--~ISIDT~~~~va~~al~aGa- 97 (279)
T PRK13753 22 LDPAGAVTAAIEML-RVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMH--RVSIDSFQPETQRYALKRGV- 97 (279)
T ss_pred CCHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCC--cEEEECCCHHHHHHHHHcCC-
Confidence 45666666666644 66888888876543 5432 22 3334467777877653 48999999999999998642
Q ss_pred eEEeeecCccccchhhhHHHHHHHhCCeEEecccCc
Q 025500 179 TAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLG 214 (252)
Q Consensus 179 ~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~ 214 (252)
+ +-++.+-+. .+.+.+.+++.+++++.+-..+
T Consensus 98 d-iINDVsg~~---d~~~~~vva~~~~~vVlmH~~~ 129 (279)
T PRK13753 98 G-YLNDIQGFP---DPALYPDIAEADCRLVVMHSAQ 129 (279)
T ss_pred C-EEEeCCCCC---chHHHHHHHHcCCCEEEEecCC
Confidence 2 122333332 2678889999999988877654
No 203
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=43.33 E-value=2.5e+02 Score=25.78 Aligned_cols=104 Identities=18% Similarity=0.184 Sum_probs=51.8
Q ss_pred cCCcCCCcHHHHHHHHHhc----CCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHHHHHcCCC-----cccEEEc
Q 025500 61 ADVYGQNANEVLLGKALKQ----LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVD-----YIDLYYQ 131 (252)
Q Consensus 61 a~~Yg~g~se~~ig~~l~~----~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d-----~iDl~~l 131 (252)
.-.|| .|+.+.+++++ .+.+=++|.|-.- ++-+-+.++...+++.-+ .+.++.+
T Consensus 64 d~V~G---g~~~L~~ai~~~~~~~~p~~I~v~ttC~--------------~~iiGdDi~~v~~~~~~~~~~~~~~~vi~v 126 (435)
T cd01974 64 AAVFG---GQNNLIDGLKNAYAVYKPDMIAVSTTCM--------------AEVIGDDLNAFIKNAKNKGSIPADFPVPFA 126 (435)
T ss_pred ceEEC---cHHHHHHHHHHHHHhcCCCEEEEeCCch--------------HhhhhccHHHHHHHHHHhccCCCCCeEEEe
Confidence 34566 57777777776 2334355555432 222333333333333221 3688888
Q ss_pred cCCCCCCCH----HHHHHHHHH-HHH-------cCCccEEEccC--CC-HHHHHHHhhcCCceEE
Q 025500 132 HRVDTSVPI----EETIGEMKK-LVE-------EGKIKYIGLSE--AS-PGTIRRAHAVHPITAV 181 (252)
Q Consensus 132 h~~~~~~~~----~~~~~~L~~-l~~-------~G~ir~iGvs~--~~-~~~l~~~~~~~~~~~~ 181 (252)
+.|...... +.++++|-+ +.. .+.|.-||-.+ .+ .+.++++++...+.++
T Consensus 127 ~tpgf~gs~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~ 191 (435)
T cd01974 127 NTPSFVGSHITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYT 191 (435)
T ss_pred cCCCCccCHHHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEE
Confidence 888654332 233444432 222 23455565222 22 5677777766544444
No 204
>PRK07094 biotin synthase; Provisional
Probab=43.26 E-value=2.2e+02 Score=24.71 Aligned_cols=115 Identities=17% Similarity=0.223 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEeCc----CCcCCCcHHHHHHHHHhcCCC-CCEEEEeccCccCCCCcccccCCChHHHHH
Q 025500 38 VSEEDGISMIKHAFSKGITFFDTA----DVYGQNANEVLLGKALKQLPR-EKIQVATKFGIAGIGVAGVIVKGAPDYVRS 112 (252)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta----~~Yg~g~se~~ig~~l~~~~R-~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~ 112 (252)
.+.++..+.++.+.+.|++.|--. +.| ..+.+-+.++.+.+ ..+.+..-.+. .+.+.+
T Consensus 70 ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~----~~~~l~~l~~~i~~~~~l~i~~~~g~-----------~~~e~l-- 132 (323)
T PRK07094 70 LSPEEILECAKKAYELGYRTIVLQSGEDPYY----TDEKIADIIKEIKKELDVAITLSLGE-----------RSYEEY-- 132 (323)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCC----CHHHHHHHHHHHHccCCceEEEecCC-----------CCHHHH--
Confidence 367888999999999999977532 222 22344444444322 34444322211 122222
Q ss_pred HHHHHHHHcCCCcccEEEccCC--------CCCCCHHHHHHHHHHHHHcCCcc----EEEccCCCHHHHHHHh
Q 025500 113 CCEASLKRLDVDYIDLYYQHRV--------DTSVPIEETIGEMKKLVEEGKIK----YIGLSEASPGTIRRAH 173 (252)
Q Consensus 113 ~~~~sL~~Lg~d~iDl~~lh~~--------~~~~~~~~~~~~L~~l~~~G~ir----~iGvs~~~~~~l~~~~ 173 (252)
+.|++.|++.+-+ -+... ......++.+++++.+++.|.-- -+|+...+.+.+.+.+
T Consensus 133 ---~~Lk~aG~~~v~~-glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l 201 (323)
T PRK07094 133 ---KAWKEAGADRYLL-RHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDI 201 (323)
T ss_pred ---HHHHHcCCCEEEe-ccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHH
Confidence 3466677665441 12221 11345678899999999998621 2466666777665544
No 205
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=43.15 E-value=2.4e+02 Score=25.15 Aligned_cols=138 Identities=13% Similarity=0.202 Sum_probs=83.9
Q ss_pred cceeecccccCCCCCC----CCCHHHHHHHHHHHHHCC---CCEEeCcCCcCCCcHHHHHHHHHhcCCCCCEEEEeccCc
Q 025500 21 SKLGYGCMNLSGGYSS----PVSEEDGISMIKHAFSKG---ITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGI 93 (252)
Q Consensus 21 s~lglG~~~~g~~~~~----~~~~~~~~~~l~~A~~~G---in~~Dta~~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~ 93 (252)
..+|-=|.++-. |+. ..+.++..+++....+.- +-.+|..+..+. -.+.+-+.+. ...-++|.+|.-.
T Consensus 28 ~~~C~RC~~l~h-y~~~~~~~~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s--~~~~l~~~~~--~~piilV~NK~DL 102 (360)
T TIGR03597 28 EVYCQRCFRLKH-YNEIQDVELNDDDFLNLLNSLGDSNALIVYVVDIFDFEGS--LIPELKRFVG--GNPVLLVGNKIDL 102 (360)
T ss_pred Ceeecchhhhhc-cCccccCCCCHHHHHHHHhhcccCCcEEEEEEECcCCCCC--ccHHHHHHhC--CCCEEEEEEchhh
Confidence 345555555432 332 245566777776665432 225676554432 1222333333 4556889999875
Q ss_pred cCCCCcccccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHH
Q 025500 94 AGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRR 171 (252)
Q Consensus 94 ~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~ 171 (252)
... ..+.+.+.+-+.+.++..|....+++.+..- ....++++++.|.++.+.+.|-.+|.+|..-+.|-.
T Consensus 103 l~k-------~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk-~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStliN 172 (360)
T TIGR03597 103 LPK-------SVNLSKIKEWMKKRAKELGLKPVDIILVSAK-KGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSLIN 172 (360)
T ss_pred CCC-------CCCHHHHHHHHHHHHHHcCCCcCcEEEecCC-CCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHH
Confidence 331 2345666666767778888654567766543 345688899999888766789999999988765433
No 206
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=42.76 E-value=2.2e+02 Score=24.41 Aligned_cols=26 Identities=12% Similarity=0.110 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEeCcC
Q 025500 37 PVSEEDGISMIKHAFSKGITFFDTAD 62 (252)
Q Consensus 37 ~~~~~~~~~~l~~A~~~Gin~~Dta~ 62 (252)
....++..++.....+.||..||...
T Consensus 17 ~~~~~~~~~ia~~L~~~Gv~~iE~G~ 42 (275)
T cd07937 17 RMRTEDMLPIAEALDEAGFFSLEVWG 42 (275)
T ss_pred eccHHHHHHHHHHHHHcCCCEEEccC
Confidence 34778889999999999999999764
No 207
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=42.46 E-value=3e+02 Score=25.96 Aligned_cols=133 Identities=12% Similarity=0.116 Sum_probs=72.1
Q ss_pred HHHHHHHHHhc---CCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCH-HHHH
Q 025500 69 NEVLLGKALKQ---LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPI-EETI 144 (252)
Q Consensus 69 se~~ig~~l~~---~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~-~~~~ 144 (252)
+++.+-+++++ ..+-++++.+-.+ .++-+-+.++...++++.+.++++.++.|...... ...-
T Consensus 69 ~~~~L~~aI~~~~~~~~P~~I~V~sTC-------------~selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~~ 135 (511)
T TIGR01278 69 SQTRLVDTVRRVDDRFKPDLIVVTPSC-------------TSSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAAD 135 (511)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEeCCC-------------hHHHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHHH
Confidence 56777777776 1223344433333 24445555666666666556889999988654432 2222
Q ss_pred HHHHHHH--------------HcCCccEEEccCC------CHHHHHHHhhcCCceEEee-e---------------cCcc
Q 025500 145 GEMKKLV--------------EEGKIKYIGLSEA------SPGTIRRAHAVHPITAVQM-E---------------WSLW 188 (252)
Q Consensus 145 ~~L~~l~--------------~~G~ir~iGvs~~------~~~~l~~~~~~~~~~~~q~-~---------------~~~~ 188 (252)
.+|+.++ +.+.|.-||.++. +...++++++...+.++.+ + +|+.
T Consensus 136 ~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v~p~g~s~~dl~~l~~A~~NIv 215 (511)
T TIGR01278 136 RTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVVAPWGASIADLARLPAAWLNIC 215 (511)
T ss_pred HHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhcccCcEEEE
Confidence 2333222 2356888898763 4456777776655555433 2 2222
Q ss_pred c-cchhhhHHHHH-HHhCCeEEecccCc
Q 025500 189 T-RDIEEEIIPLC-RELGIGIVPYSPLG 214 (252)
Q Consensus 189 ~-~~~~~~l~~~~-~~~gi~v~a~spl~ 214 (252)
. +.....+.++. ++.|++++...|++
T Consensus 216 ~~~~~g~~~A~~Le~~fGiP~i~~~PiG 243 (511)
T TIGR01278 216 PYREIGLMAAEYLKEKFGQPYITTTPIG 243 (511)
T ss_pred echHHHHHHHHHHHHHhCCCcccccccC
Confidence 1 11112234444 35599998877775
No 208
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=42.25 E-value=2.2e+02 Score=25.78 Aligned_cols=90 Identities=12% Similarity=0.101 Sum_probs=59.0
Q ss_pred cEEEccCCCCC-----------CCHHHHHHHHHHHH-HcCC---ccEEEccC--CCHHHHHHH---hhcC---CceEEee
Q 025500 127 DLYYQHRVDTS-----------VPIEETIGEMKKLV-EEGK---IKYIGLSE--ASPGTIRRA---HAVH---PITAVQM 183 (252)
Q Consensus 127 Dl~~lh~~~~~-----------~~~~~~~~~L~~l~-~~G~---ir~iGvs~--~~~~~l~~~---~~~~---~~~~~q~ 183 (252)
=.+.||.++++ .+++++++++.++. +.|+ |+++=+.+ .+.++++++ ++.. +..++-+
T Consensus 240 LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLI 319 (373)
T PRK14459 240 LAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLI 319 (373)
T ss_pred EEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEE
Confidence 34678998652 34788899887776 4465 55665553 444444444 4434 5678888
Q ss_pred ecCcccc-----chh---hhHHHHHHHhCCeEEecccCccc
Q 025500 184 EWSLWTR-----DIE---EEIIPLCRELGIGIVPYSPLGRG 216 (252)
Q Consensus 184 ~~~~~~~-----~~~---~~l~~~~~~~gi~v~a~spl~~G 216 (252)
+||+... ... ..+.+..+++||.+......+.-
T Consensus 320 pyNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~d 360 (373)
T PRK14459 320 PLNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQE 360 (373)
T ss_pred ccCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCcC
Confidence 9998543 111 55777788999999998877543
No 209
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=42.18 E-value=1.4e+02 Score=27.29 Aligned_cols=56 Identities=18% Similarity=0.073 Sum_probs=34.4
Q ss_pred HHHHHHHhhcC----CceEEeeecCccccchh--hhHHHHHHHhCCeEEecccCccccCCCC
Q 025500 166 PGTIRRAHAVH----PITAVQMEWSLWTRDIE--EEIIPLCRELGIGIVPYSPLGRGFFGGK 221 (252)
Q Consensus 166 ~~~l~~~~~~~----~~~~~q~~~~~~~~~~~--~~l~~~~~~~gi~v~a~spl~~G~L~~~ 221 (252)
.+.+++++... -+..+|-+-.+...+.+ ..+.++|+++|+-+|.-..-.|==-||+
T Consensus 174 i~al~~ai~~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk 235 (404)
T COG4992 174 IEALEAAIDEDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGK 235 (404)
T ss_pred HHHHHHHhccCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccch
Confidence 34555554431 13345666555555444 8899999999999888777653223555
No 210
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=42.04 E-value=2.5e+02 Score=25.01 Aligned_cols=154 Identities=13% Similarity=0.084 Sum_probs=95.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASL 118 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 118 (252)
+++.....-+...+.|++.|=.-..-++...+...=+++++.-.+++.|..-... .++.+. ..+.+
T Consensus 143 ~~e~~~~~~~~~~~~G~~~~Klk~g~~~~~~d~~~v~avRe~~g~~~~l~iDan~----------~~~~~~----A~~~~ 208 (372)
T COG4948 143 PEEMAAEAARALVELGFKALKLKVGVGDGDEDLERVRALREAVGDDVRLMVDANG----------GWTLEE----AIRLA 208 (372)
T ss_pred CHHHHHHHHHHHHhcCCceEEecCCCCchHHHHHHHHHHHHHhCCCceEEEeCCC----------CcCHHH----HHHHH
Confidence 4566666666666689997765444433213333335666533334444333222 133431 22233
Q ss_pred HHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcC-CccEEEccCCCHHHHHHHhhcCCceEEeeecCccccchh-hhH
Q 025500 119 KRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIE-EEI 196 (252)
Q Consensus 119 ~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G-~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~-~~l 196 (252)
+.|. ..++.++..|-.. +..+.+.++.+.- .--+.|=|.++..++.++++....+++|++..-.-.-.+ ..+
T Consensus 209 ~~l~--~~~l~~iEeP~~~----~d~~~~~~l~~~~~~PIa~gEs~~~~~~~~~l~~~~a~div~~d~~~~GGite~~ki 282 (372)
T COG4948 209 RALE--EYGLEWIEEPLPP----DDLEGLRELRAATSTPIAAGESVYTRWDFRRLLEAGAVDIVQPDLARVGGITEALKI 282 (372)
T ss_pred HHhc--ccCcceEECCCCc----cCHHHHHHHHhcCCCCEecCcccccHHHHHHHHHcCCCCeecCCccccCCHHHHHHH
Confidence 3332 2337778877554 3467777888753 555677788999999999998889999998776443222 778
Q ss_pred HHHHHHhCCeEEeccc
Q 025500 197 IPLCRELGIGIVPYSP 212 (252)
Q Consensus 197 ~~~~~~~gi~v~a~sp 212 (252)
.+.|+..++.+..+..
T Consensus 283 a~~A~~~~~~v~~h~~ 298 (372)
T COG4948 283 AALAEGFGVMVGPHVE 298 (372)
T ss_pred HHHHHHhCCceeccCc
Confidence 8889989988887766
No 211
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=42.04 E-value=1.3e+02 Score=21.73 Aligned_cols=56 Identities=23% Similarity=0.268 Sum_probs=31.2
Q ss_pred HHHHHcCC-ccEEEccCCCHHHHHHHhhcCCceEEeeecCccccchh-hhHHHHHHHhC
Q 025500 148 KKLVEEGK-IKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIE-EEIIPLCRELG 204 (252)
Q Consensus 148 ~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~-~~l~~~~~~~g 204 (252)
.-|+..|. |.++| .+.+.+.+.+......++++.+.++.-.+... .++++.+++.+
T Consensus 21 ~~l~~~G~~V~~lg-~~~~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~ 78 (119)
T cd02067 21 RALRDAGFEVIDLG-VDVPPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAG 78 (119)
T ss_pred HHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcC
Confidence 34445555 44556 44566666665555666666666553333222 56777777664
No 212
>PRK06256 biotin synthase; Validated
Probab=41.98 E-value=2.4e+02 Score=24.71 Aligned_cols=118 Identities=19% Similarity=0.198 Sum_probs=62.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEE-eCcCCcCCCcH-HHHHHHHHhcCCC-CCEEEEeccCccCCCCcccccCCChHHHHHHH
Q 025500 38 VSEEDGISMIKHAFSKGITFF-DTADVYGQNAN-EVLLGKALKQLPR-EKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (252)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~-Dta~~Yg~g~s-e~~ig~~l~~~~R-~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 114 (252)
.+.++..+.++.+.+.|++.| -.+..+++... -+.+-+.++.+.+ -.+.+.+-.+. .+.+.+
T Consensus 91 ~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~~~g~-----------l~~e~l---- 155 (336)
T PRK06256 91 LDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEICACLGL-----------LTEEQA---- 155 (336)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCCcEEecCCc-----------CCHHHH----
Confidence 478999999999999998633 22333332111 1344455554322 23333332221 223333
Q ss_pred HHHHHHcCCCcccEEEccC-------CCCCCCHHHHHHHHHHHHHcCCccE----EEccCCCHHHHHHHh
Q 025500 115 EASLKRLDVDYIDLYYQHR-------VDTSVPIEETIGEMKKLVEEGKIKY----IGLSEASPGTIRRAH 173 (252)
Q Consensus 115 ~~sL~~Lg~d~iDl~~lh~-------~~~~~~~~~~~~~L~~l~~~G~ir~----iGvs~~~~~~l~~~~ 173 (252)
+.|++.|++.+-+- +.. .......++.+++++.+++.|.--. +|+ +.+.+++.+.+
T Consensus 156 -~~LkeaG~~~v~~~-lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl-gEt~ed~~~~~ 222 (336)
T PRK06256 156 -ERLKEAGVDRYNHN-LETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGM-GESLEDRVEHA 222 (336)
T ss_pred -HHHHHhCCCEEecC-CccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeC-CCCHHHHHHHH
Confidence 34777777654321 111 1112346788899999999986222 345 55665554443
No 213
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=41.79 E-value=2.4e+02 Score=24.81 Aligned_cols=120 Identities=13% Similarity=-0.009 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHH-------
Q 025500 38 VSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYV------- 110 (252)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i------- 110 (252)
.+.++..+.++.+.+.|++.|-......+....+.+-+.++.+.+.-..+..+. .++..+
T Consensus 72 ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i~~~~-------------~s~~ei~~~~~~~ 138 (340)
T TIGR03699 72 LSVEEILQKIEELVAYGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPHIHIHS-------------FSPVEIVYIAKKE 138 (340)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcCCCC-------------CCHHHHHHHhccC
Confidence 578899999999999999877764332221122233333332211110111111 111111
Q ss_pred ---HHHHHHHHHHcCCCcccEEE---c-----cCC-CCCCCHHHHHHHHHHHHHcCCccE----EEccCCCHHHHHH
Q 025500 111 ---RSCCEASLKRLDVDYIDLYY---Q-----HRV-DTSVPIEETIGEMKKLVEEGKIKY----IGLSEASPGTIRR 171 (252)
Q Consensus 111 ---~~~~~~sL~~Lg~d~iDl~~---l-----h~~-~~~~~~~~~~~~L~~l~~~G~ir~----iGvs~~~~~~l~~ 171 (252)
.+..-+.|++.|+++++..- + +.. ......++.+++++.+++.|.--. +|+ +.+.+++.+
T Consensus 139 g~~~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGl-gEt~ed~~~ 214 (340)
T TIGR03699 139 GLSLREVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGH-VETLEDRIE 214 (340)
T ss_pred CCCHHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeC-CCCHHHHHH
Confidence 14455667778888775210 0 110 112356778999999999986322 354 556555444
No 214
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=41.75 E-value=2.2e+02 Score=24.25 Aligned_cols=101 Identities=14% Similarity=0.160 Sum_probs=61.8
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhc--CCceEEe
Q 025500 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV--HPITAVQ 182 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~q 182 (252)
.+.+.+.+..++. ..-|.+.||+-.=- ......+.....++.+++.-.+ -|.+-+++++.++++++. +..-+|
T Consensus 22 ~d~~~i~~~A~~~-~~~GAdiIDVg~~~--~~~eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~G~~iIN- 96 (261)
T PRK07535 22 KDAAFIQKLALKQ-AEAGADYLDVNAGT--AVEEEPETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAKGPPLIN- 96 (261)
T ss_pred CCHHHHHHHHHHH-HHCCCCEEEECCCC--CchhHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCCCCCEEE-
Confidence 3455666555554 37789999987532 2222233445555555544222 378889999999999886 433333
Q ss_pred eecCccccchhhhHHHHHHHhCCeEEeccc
Q 025500 183 MEWSLWTRDIEEEIIPLCRELGIGIVPYSP 212 (252)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~~gi~v~a~sp 212 (252)
..+..... .+.+++.++++|..++...-
T Consensus 97 -sIs~~~~~-~~~~~~l~~~~g~~vv~m~~ 124 (261)
T PRK07535 97 -SVSAEGEK-LEVVLPLVKKYNAPVVALTM 124 (261)
T ss_pred -eCCCCCcc-CHHHHHHHHHhCCCEEEEec
Confidence 33332211 25788899999998887543
No 215
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=41.01 E-value=1.9e+02 Score=24.68 Aligned_cols=66 Identities=20% Similarity=0.233 Sum_probs=49.6
Q ss_pred ChHHHHHHHHHHHHHcCC--------------------------CcccEEEccCCCCCCCH---HHHHHHHHHHHHcCCc
Q 025500 106 APDYVRSCCEASLKRLDV--------------------------DYIDLYYQHRVDTSVPI---EETIGEMKKLVEEGKI 156 (252)
Q Consensus 106 ~~~~i~~~~~~sL~~Lg~--------------------------d~iDl~~lh~~~~~~~~---~~~~~~L~~l~~~G~i 156 (252)
+.+. ++.++++|++.|. ...|++++.-|....+. .+.++-|.+|+++|+
T Consensus 113 ~~~d-~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~- 190 (254)
T COG1121 113 NKKD-KEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK- 190 (254)
T ss_pred cHHH-HHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC-
Confidence 3444 6788899998885 56789999888766654 467899999999966
Q ss_pred cEEEccCCCHHHHHHHhh
Q 025500 157 KYIGLSEASPGTIRRAHA 174 (252)
Q Consensus 157 r~iGvs~~~~~~l~~~~~ 174 (252)
.|=+..|+.....+..+
T Consensus 191 -tIl~vtHDL~~v~~~~D 207 (254)
T COG1121 191 -TVLMVTHDLGLVMAYFD 207 (254)
T ss_pred -EEEEEeCCcHHhHhhCC
Confidence 67777888877666543
No 216
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=40.83 E-value=3.1e+02 Score=25.70 Aligned_cols=151 Identities=13% Similarity=0.092 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCCCc-HHHHHHHHHhc-CCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQNA-NEVLLGKALKQ-LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEA 116 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~-se~~ig~~l~~-~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (252)
+.+.....++.|.+.|+..|=..++-.+-+ .+..+. +.+. ...-++.|+-...+ .++.+.+.+.+++
T Consensus 103 pddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~-~ak~~G~~~~~~i~yt~sp----------~~t~~y~~~~a~~ 171 (468)
T PRK12581 103 ADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALR-AVKKTGKEAQLCIAYTTSP----------VHTLNYYLSLVKE 171 (468)
T ss_pred cchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHH-HHHHcCCEEEEEEEEEeCC----------cCcHHHHHHHHHH
Confidence 557778889999999999887776655322 233332 3332 22122333333311 2466777776666
Q ss_pred HHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHH-----HhhcCCceEEeeecCccccc
Q 025500 117 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRR-----AHAVHPITAVQMEWSLWTRD 191 (252)
Q Consensus 117 sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~-----~~~~~~~~~~q~~~~~~~~~ 191 (252)
+..+|. |.+.|-+.-......++.+-+..+++... .-||+=.|+...+.- +++ ...+.+..-.+.+-..
T Consensus 172 -l~~~Ga---d~I~IkDtaG~l~P~~v~~Lv~alk~~~~-~pi~~H~Hnt~GlA~An~laAie-AGad~vD~ai~g~g~g 245 (468)
T PRK12581 172 -LVEMGA---DSICIKDMAGILTPKAAKELVSGIKAMTN-LPLIVHTHATSGISQMTYLAAVE-AGADRIDTALSPFSEG 245 (468)
T ss_pred -HHHcCC---CEEEECCCCCCcCHHHHHHHHHHHHhccC-CeEEEEeCCCCccHHHHHHHHHH-cCCCEEEeeccccCCC
Confidence 456776 55666555444444556666666666443 347777766433222 222 2234444444443332
Q ss_pred ----hhhhHHHHHHHhCCe
Q 025500 192 ----IEEEIIPLCRELGIG 206 (252)
Q Consensus 192 ----~~~~l~~~~~~~gi~ 206 (252)
+.+.++..++..|..
T Consensus 246 agN~~tE~lv~~L~~~g~~ 264 (468)
T PRK12581 246 TSQPATESMYLALKEAGYD 264 (468)
T ss_pred cCChhHHHHHHHHHhcCCC
Confidence 125667677665543
No 217
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=40.57 E-value=1.1e+02 Score=27.86 Aligned_cols=81 Identities=12% Similarity=0.062 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhc-CCceEEeeecCccccchh-hhHHHHHHHhC-CeEEecccCccc
Q 025500 140 IEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV-HPITAVQMEWSLWTRDIE-EEIIPLCRELG-IGIVPYSPLGRG 216 (252)
Q Consensus 140 ~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~~-~~l~~~~~~~g-i~v~a~spl~~G 216 (252)
..++.+-++++....-|...=+...+.+.++++++. ....++..+-|+...-.. ..+.+.|+++| +.++.=..++.+
T Consensus 104 Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp 183 (386)
T PF01053_consen 104 YGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATP 183 (386)
T ss_dssp SHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHT
T ss_pred cCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccce
Confidence 345666666655555555544555567777777653 445666777777655433 78999999999 999999999877
Q ss_pred cCCC
Q 025500 217 FFGG 220 (252)
Q Consensus 217 ~L~~ 220 (252)
.+..
T Consensus 184 ~~~~ 187 (386)
T PF01053_consen 184 YNQN 187 (386)
T ss_dssp TTC-
T ss_pred eeec
Confidence 5543
No 218
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=40.40 E-value=3e+02 Score=25.45 Aligned_cols=111 Identities=14% Similarity=0.062 Sum_probs=70.0
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEccCCCCC-CCHHHHHHHHHHHHHcCCccEEEccCCC---HHHHHHHhhcCCce
Q 025500 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLSEAS---PGTIRRAHAVHPIT 179 (252)
Q Consensus 104 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-~~~~~~~~~L~~l~~~G~ir~iGvs~~~---~~~l~~~~~~~~~~ 179 (252)
..+++.+.+.+++..+.++ .++.+-+-.|.+. ...+.+++.+..++++..=..+.+++.. ++.++++.+. .++
T Consensus 59 ~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~-gvd 135 (442)
T TIGR01290 59 LLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVDL-GVG 135 (442)
T ss_pred cCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHC-CCC
Confidence 4789999999988887663 3455666554332 2234578888888888321257777644 5777777664 245
Q ss_pred EEeeecCccccchh---------------------------hhHHHHHHHhCCeEEecccCcccc
Q 025500 180 AVQMEWSLWTRDIE---------------------------EEIIPLCRELGIGIVPYSPLGRGF 217 (252)
Q Consensus 180 ~~q~~~~~~~~~~~---------------------------~~l~~~~~~~gi~v~a~spl~~G~ 217 (252)
.+.+.++-.++... .+-++.+.+.|+.|....++--|.
T Consensus 136 ~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlIpGi 200 (442)
T TIGR01290 136 HVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLIPGI 200 (442)
T ss_pred eEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEeeCCc
Confidence 56666554432110 123556778899988888877664
No 219
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=40.22 E-value=2.9e+02 Score=25.17 Aligned_cols=106 Identities=17% Similarity=0.160 Sum_probs=65.0
Q ss_pred HHHHHHHHHHH-----------HHcCCCcccEEEccCCCCC-----CCHHHHHHHHHHHHH-cCCccEEEcc---CCCHH
Q 025500 108 DYVRSCCEASL-----------KRLDVDYIDLYYQHRVDTS-----VPIEETIGEMKKLVE-EGKIKYIGLS---EASPG 167 (252)
Q Consensus 108 ~~i~~~~~~sL-----------~~Lg~d~iDl~~lh~~~~~-----~~~~~~~~~L~~l~~-~G~ir~iGvs---~~~~~ 167 (252)
+.+.+.++... +.++ +|++.||.-..+ .+.++..+..++..+ .+.---|+=| ..+++
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~~---aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~e 204 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEFG---ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPL 204 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhC---CCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHH
Confidence 55666666655 6666 577777765332 234456666666633 3444444444 57889
Q ss_pred HHHHHhhcCCc-eEEeeecCccccchhhhHHHHHHHhCCeEEecccCccccC
Q 025500 168 TIRRAHAVHPI-TAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFF 218 (252)
Q Consensus 168 ~l~~~~~~~~~-~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L 218 (252)
.++++++...= .++-...|.-. ....+.+.|+++|..|++++|..-|.+
T Consensus 205 VLeaaLe~~~G~kpLL~SAt~e~--Ny~~ia~lAk~yg~~Vvv~s~~Din~a 254 (389)
T TIGR00381 205 VLEKAAEVAEGERCLLASANLDL--DYEKIANAAKKYGHVVLSWTIMDINMQ 254 (389)
T ss_pred HHHHHHHHhCCCCcEEEecCchh--hHHHHHHHHHHhCCeEEEEcCCcHHHH
Confidence 99998876211 11111122210 237899999999999999999876643
No 220
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=40.16 E-value=43 Score=24.59 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcC
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYG 65 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg 65 (252)
+.+.+.+....+++.|++.||.+..|-
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 678889999999999999999999884
No 221
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=40.05 E-value=71 Score=27.10 Aligned_cols=85 Identities=11% Similarity=0.012 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHHHHHc
Q 025500 42 DGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRL 121 (252)
Q Consensus 42 ~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L 121 (252)
...+.++.|-+.|++.++.++.+-. .+++.--++++...+.-+.+.+-++.... ......+++.+.+.+++-|+.
T Consensus 85 ~~~~yl~~~k~lGf~~IEiSdGti~-l~~~~r~~~I~~~~~~Gf~v~~EvG~K~~---~~~~~~~~~~~i~~~~~dLeA- 159 (244)
T PF02679_consen 85 KFDEYLEECKELGFDAIEISDGTID-LPEEERLRLIRKAKEEGFKVLSEVGKKDP---ESDFSLDPEELIEQAKRDLEA- 159 (244)
T ss_dssp -HHHHHHHHHHCT-SEEEE--SSS----HHHHHHHHHHHCCTTSEEEEEES-SSH---HHHTT--CCHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHcCCCEEEecCCcee-CCHHHHHHHHHHHHHCCCEEeecccCCCc---hhcccCCHHHHHHHHHHHHHC-
Confidence 4567788888889999998877653 45566667777666667889999986542 223334577888888888887
Q ss_pred CCCcccEEEccCC
Q 025500 122 DVDYIDLYYQHRV 134 (252)
Q Consensus 122 g~d~iDl~~lh~~ 134 (252)
| .|.+++...
T Consensus 160 G---A~~ViiEar 169 (244)
T PF02679_consen 160 G---ADKVIIEAR 169 (244)
T ss_dssp T---ECEEEE--T
T ss_pred C---CCEEEEeee
Confidence 5 577788665
No 222
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=39.51 E-value=1.8e+02 Score=25.90 Aligned_cols=64 Identities=9% Similarity=0.135 Sum_probs=41.0
Q ss_pred ccEEEccCCCHHHHHHHhhc-CCceEEeeecCccccch-hhhHHHHHHHhCCeEEecccCccccCC
Q 025500 156 IKYIGLSEASPGTIRRAHAV-HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRGFFG 219 (252)
Q Consensus 156 ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~-~~~l~~~~~~~gi~v~a~spl~~G~L~ 219 (252)
++..-+...+.+.+++++.. ....++..+.|+..... -.++.+.|+++|+.++.=..++.+.+.
T Consensus 116 ~~v~~vd~~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~ 181 (366)
T PRK08247 116 VRFVYVNTASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQ 181 (366)
T ss_pred ceEEEECCCCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcccccc
Confidence 44444544567777776542 33444555667644322 278999999999999988877655543
No 223
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=39.32 E-value=2.7e+02 Score=24.59 Aligned_cols=133 Identities=12% Similarity=0.092 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEe----------CcCCcCCC--cHHHHHHHHHhcCC-CCCEEEEeccCccCCCCcccccCC
Q 025500 39 SEEDGISMIKHAFSKGITFFD----------TADVYGQN--ANEVLLGKALKQLP-REKIQVATKFGIAGIGVAGVIVKG 105 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~D----------ta~~Yg~g--~se~~ig~~l~~~~-R~~~~i~tK~~~~~~~~~~~~~~~ 105 (252)
+++...++.+.+.+.|+..|| +...||.. ..-+.+.+.++.++ .-.+-|+.|+...... ..
T Consensus 75 ~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~------~~ 148 (333)
T PRK11815 75 DPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDD------QD 148 (333)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCC------Cc
Confidence 778888888899999999998 33455531 12334444444321 1246777776322210 11
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEccCCCC-CCCHH---------HHHHHHHHHHHcC-CccEEEccC-CCHHHHHHHh
Q 025500 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDT-SVPIE---------ETIGEMKKLVEEG-KIKYIGLSE-ASPGTIRRAH 173 (252)
Q Consensus 106 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~-~~~~~---------~~~~~L~~l~~~G-~ir~iGvs~-~~~~~l~~~~ 173 (252)
+.+.. ..+-+.++..|+ |.+.+|.... ..... -.|+.+.++++.- .|--||..+ .+++.+.+++
T Consensus 149 t~~~~-~~~~~~l~~aG~---d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l 224 (333)
T PRK11815 149 SYEFL-CDFVDTVAEAGC---DTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHL 224 (333)
T ss_pred CHHHH-HHHHHHHHHhCC---CEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHH
Confidence 22222 234445666774 6677885432 00000 1377777888763 677788777 4677777776
Q ss_pred hcCCceEEee
Q 025500 174 AVHPITAVQM 183 (252)
Q Consensus 174 ~~~~~~~~q~ 183 (252)
+. .+.+++
T Consensus 225 ~~--aDgVmI 232 (333)
T PRK11815 225 QH--VDGVMI 232 (333)
T ss_pred hc--CCEEEE
Confidence 53 444444
No 224
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=38.87 E-value=1.9e+02 Score=26.52 Aligned_cols=80 Identities=9% Similarity=0.045 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHcCCccEEEccCCCHHHHHHHhh--cCCceEEeeecCccccchh-hhHHHHHHHhCCeEEecccCccccC
Q 025500 142 ETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHA--VHPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFF 218 (252)
Q Consensus 142 ~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~--~~~~~~~q~~~~~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~L 218 (252)
.+.+-++.+.++.-|....+...+.+.+.+++. .....++..+-|+...-.. ..+.+.|+++|+.++.=..|+.+.+
T Consensus 114 ~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP~~ 193 (396)
T COG0626 114 GTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPVL 193 (396)
T ss_pred hHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccccc
Confidence 455555666555666666665555544444443 3566677777887776433 7899999999999999999998877
Q ss_pred CCC
Q 025500 219 GGK 221 (252)
Q Consensus 219 ~~~ 221 (252)
...
T Consensus 194 q~P 196 (396)
T COG0626 194 QRP 196 (396)
T ss_pred cCh
Confidence 655
No 225
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=38.85 E-value=3.4e+02 Score=25.56 Aligned_cols=180 Identities=12% Similarity=0.044 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHH-hcCCCCCEEEEeccCccCCC-----------C-c------
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKAL-KQLPREKIQVATKFGIAGIG-----------V-A------ 99 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l-~~~~R~~~~i~tK~~~~~~~-----------~-~------ 99 (252)
+.++..++.+.-.+.||..|+....-.+....+.+ +.+ +..+..++..-+........ + .
T Consensus 21 s~e~K~~ia~~L~~~GV~~IEvG~p~~s~~d~e~v-~~i~~~~~~~~i~al~r~~~~did~a~~al~~~~~~~v~i~~~~ 99 (494)
T TIGR00973 21 TVEEKLQIALALERLGVDIIEAGFPVSSPGDFEAV-QRIARTVKNPRVCGLARCVEKDIDAAAEALKPAEKFRIHTFIAT 99 (494)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHH-HHHHHhCCCCEEEEEcCCCHHhHHHHHHhccccCCCEEEEEEcc
Confidence 67889999999999999999964322211122333 333 32333333332221100000 0 0
Q ss_pred -----ccccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCC-CCCHHHHHHHHHHHHHcCCccEEEccC----CCHHHH
Q 025500 100 -----GVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT-SVPIEETIGEMKKLVEEGKIKYIGLSE----ASPGTI 169 (252)
Q Consensus 100 -----~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~-~~~~~~~~~~L~~l~~~G~ir~iGvs~----~~~~~l 169 (252)
......+++.+.+.+.++.+...- +-.-+.+..++. ..+.+.+++.++.+.+.| +..|.+++ .+|+++
T Consensus 100 S~~h~~~~l~~s~~e~l~~~~~~v~~a~~-~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~G-a~~i~l~DTvG~~~P~~~ 177 (494)
T TIGR00973 100 SPIHLEHKLKMTRDEVLERAVGMVKYAKN-FTDDVEFSCEDAGRTEIPFLARIVEAAINAG-ATTINIPDTVGYALPAEY 177 (494)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHH-cCCeEEEEcCCCCCCCHHHHHHHHHHHHHcC-CCEEEeCCCCCCCCHHHH
Confidence 001123455555555555544432 122244444433 235666777777777776 56788776 456665
Q ss_pred HHHhhc----CC-ceEEeeecCccccc-hhhhHHHHHHHhCCeEEecccCccccCCCC
Q 025500 170 RRAHAV----HP-ITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRGFFGGK 221 (252)
Q Consensus 170 ~~~~~~----~~-~~~~q~~~~~~~~~-~~~~l~~~~~~~gi~v~a~spl~~G~L~~~ 221 (252)
.++.+. .+ ..-+.+.+|.-+.. ..-.-.-.|-+.|+..+--+-.+-|--+|.
T Consensus 178 ~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANalaAv~aGa~~vd~tv~GlGERaGN 235 (494)
T TIGR00973 178 GNLIKGLRENVPNIDKAILSVHCHNDLGLAVANSLAAVQNGARQVECTINGIGERAGN 235 (494)
T ss_pred HHHHHHHHHhhccccCceEEEEeCCCCChHHHHHHHHHHhCCCEEEEEeecccccccC
Confidence 555433 21 11233455444332 112222334478998888888887755544
No 226
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=38.72 E-value=2e+02 Score=26.97 Aligned_cols=100 Identities=9% Similarity=0.103 Sum_probs=54.6
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEccCCCCCC------CHHHHHHHHHHHHHcC-CccE---------EEccCCCHHH
Q 025500 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV------PIEETIGEMKKLVEEG-KIKY---------IGLSEASPGT 168 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~------~~~~~~~~L~~l~~~G-~ir~---------iGvs~~~~~~ 168 (252)
.+.+... .+-+.|.++|++.|++. ..... .-++.|+.|+.+++.. .++. +|..++.-+.
T Consensus 22 ~~t~dkl-~Ia~~Ld~~Gv~~IE~~----ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDv 96 (467)
T PRK14041 22 MRTEDML-PALEAFDRMGFYSMEVW----GGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDV 96 (467)
T ss_pred CCHHHHH-HHHHHHHHcCCCEEEec----CCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchh
Confidence 4444444 35566888899999983 11110 0123577777777652 2333 2332233232
Q ss_pred ----HHHHhhcCCceEEeeecCccccchhhhHHHHHHHhCCeEEec
Q 025500 169 ----IRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPY 210 (252)
Q Consensus 169 ----l~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~ 210 (252)
++.+.+ ..++++.+-.++.+...-...+++++++|..+.+.
T Consensus 97 v~~fv~~A~~-~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~ 141 (467)
T PRK14041 97 VELFVKKVAE-YGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGA 141 (467)
T ss_pred hHHHHHHHHH-CCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 333333 34566666555544433367788899999877644
No 227
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=38.69 E-value=3.2e+02 Score=25.20 Aligned_cols=104 Identities=21% Similarity=0.168 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHHCCCC-EEeCcCCcCCCcHHHHHHHHHhcCCCCCEEEEeccCccCCCC----cccccCCChHHHHHH
Q 025500 39 SEEDGISMIKHAFSKGIT-FFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGV----AGVIVKGAPDYVRSC 113 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin-~~Dta~~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~----~~~~~~~~~~~i~~~ 113 (252)
+.+.-.+-++.|.+.|-. ..|.+- .| .-..+.+.+- ....+-|.|=--+..... .+...+.+.+.+.+.
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLSt-gg---dl~~iR~~il--~~s~vpvGTVPiYqa~~~~~~k~~~~~~mt~d~~~~~ 148 (431)
T PRK13352 75 DIEEELEKAKVAVKYGADTIMDLST-GG---DLDEIRRAII--EASPVPVGTVPIYQAAVEAARKYGSVVDMTEDDLFDV 148 (431)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeccC-CC---CHHHHHHHHH--HcCCCCCcChhHHHHHHHHHhcCCChhhCCHHHHHHH
Confidence 666667779999999976 556553 33 3333433332 112222222110000000 112345778888888
Q ss_pred HHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEE
Q 025500 114 CEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYI 159 (252)
Q Consensus 114 ~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~i 159 (252)
+++..+ +=+|.+-+|.-- ..+.++.++++|++-.|
T Consensus 149 ie~qa~----~GVDfmTiHcGi-------~~~~~~~~~~~~R~~gi 183 (431)
T PRK13352 149 IEKQAK----DGVDFMTIHCGV-------TRETLERLKKSGRIMGI 183 (431)
T ss_pred HHHHHH----hCCCEEEEccch-------hHHHHHHHHhcCCccCe
Confidence 887776 357899999852 36778888888865433
No 228
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=38.46 E-value=2.9e+02 Score=24.64 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=14.0
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEc
Q 025500 106 APDYVRSCCEASLKRLDVDYIDLYYQ 131 (252)
Q Consensus 106 ~~~~i~~~~~~sL~~Lg~d~iDl~~l 131 (252)
+.+.+.+.++..+ +++.+++.+|.+
T Consensus 164 t~e~~~~~l~~~~-~l~~~~is~y~l 188 (374)
T PRK05799 164 TLEDWKETLEKVV-ELNPEHISCYSL 188 (374)
T ss_pred CHHHHHHHHHHHH-hcCCCEEEEecc
Confidence 4555555555543 356666666554
No 229
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=38.41 E-value=2.7e+02 Score=24.19 Aligned_cols=97 Identities=20% Similarity=0.276 Sum_probs=61.7
Q ss_pred HHHcCCCcccEEEccCCCCCCCHHHHH-----HHHHHHHHcCCccEEEccCCCHHH-------HHHHhhcCCceEEeeec
Q 025500 118 LKRLDVDYIDLYYQHRVDTSVPIEETI-----GEMKKLVEEGKIKYIGLSEASPGT-------IRRAHAVHPITAVQMEW 185 (252)
Q Consensus 118 L~~Lg~d~iDl~~lh~~~~~~~~~~~~-----~~L~~l~~~G~ir~iGvs~~~~~~-------l~~~~~~~~~~~~q~~~ 185 (252)
++-+.-..+|++.+..+.......+.. +.+.++.++--=|++|+.+.++.. ++++... ..++++.+
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~~--~gf~g~~l 132 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEELERRVRE--LGFVGVKL 132 (293)
T ss_pred HhhhcccccceEEeeccccccchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHHh--cCceEEEe
Confidence 777778889999998521222222322 478888888888999999877652 3333333 33444544
Q ss_pred Cccccc-----hh-hhHHHHHHHhCCeEEecccCccc
Q 025500 186 SLWTRD-----IE-EEIIPLCRELGIGIVPYSPLGRG 216 (252)
Q Consensus 186 ~~~~~~-----~~-~~l~~~~~~~gi~v~a~spl~~G 216 (252)
++..+. .. ..++++|.++|+.|+-+.....+
T Consensus 133 ~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~ 169 (293)
T COG2159 133 HPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPG 169 (293)
T ss_pred cccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 443322 11 56999999999999986655433
No 230
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=38.34 E-value=2.3e+02 Score=23.47 Aligned_cols=85 Identities=11% Similarity=0.030 Sum_probs=44.6
Q ss_pred HHHHHcCCCcccEEEccCCCCCCCHH-HHHHHHHHHHHcCCccEEEccC-CCHHHHHHHhhcCCceEEeeecCccccch-
Q 025500 116 ASLKRLDVDYIDLYYQHRVDTSVPIE-ETIGEMKKLVEEGKIKYIGLSE-ASPGTIRRAHAVHPITAVQMEWSLWTRDI- 192 (252)
Q Consensus 116 ~sL~~Lg~d~iDl~~lh~~~~~~~~~-~~~~~L~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~~~~~~~~~- 192 (252)
+.++.+|. |.+.+|..+.....+ --|+.++++++.-.+.-|.... .+++.+.++++....+.+.+---++....
T Consensus 156 ~~l~~~G~---d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~~~ 232 (243)
T cd04731 156 KEVEELGA---GEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEYT 232 (243)
T ss_pred HHHHHCCC---CEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCCCC
Confidence 44566666 455555544321110 1355666666665666666665 35777887776545555555322222211
Q ss_pred hhhHHHHHHHh
Q 025500 193 EEEIIPLCREL 203 (252)
Q Consensus 193 ~~~l~~~~~~~ 203 (252)
..++.++|+++
T Consensus 233 ~~~~~~~~~~~ 243 (243)
T cd04731 233 IAELKEYLAER 243 (243)
T ss_pred HHHHHHHHhhC
Confidence 25566666653
No 231
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=37.95 E-value=2.3e+02 Score=23.36 Aligned_cols=22 Identities=18% Similarity=0.542 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEeC
Q 025500 39 SEEDGISMIKHAFSKGITFFDT 60 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dt 60 (252)
.+|.....++.|++.|+..|++
T Consensus 13 ~pENTl~Af~~A~~~G~d~iE~ 34 (237)
T cd08583 13 TYTNSLDAFEHNYKKGYRVFEV 34 (237)
T ss_pred CCccHHHHHHHHHHhCCCEEEE
Confidence 4688899999999999998875
No 232
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=37.88 E-value=2.3e+02 Score=25.19 Aligned_cols=125 Identities=14% Similarity=0.119 Sum_probs=66.2
Q ss_pred HHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcC
Q 025500 75 KALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG 154 (252)
Q Consensus 75 ~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G 154 (252)
..+....|+++-++|++.......+=..-..+. .+.+.+-+.+++.|- +..+|..+ .++.....++.+..|
T Consensus 15 ~~lp~~s~~dvdlst~~~~~~l~~P~~inAM~t-~iN~~LA~~a~~~G~----~~~~~k~~----~e~~~~~~r~~~~~~ 85 (326)
T PRK05458 15 NKCIVNSRSECDTSVTLGPRTFKLPVVPANMQT-IIDEKIAEWLAENGY----FYIMHRFD----PEARIPFIKDMHEQG 85 (326)
T ss_pred CCCCCCCHHHcccceEECCcEecCcEEEecccc-hhHHHHHHHHHHcCC----EEEEecCC----HHHHHHHHHhccccc
Confidence 344446788999999886432211000111222 788888888888874 55667732 233333334444556
Q ss_pred CccEEEccCCCHHH---HHHHhhcC-CceEEeeecCccccchhhhHHHHHHHh--CCeEEe
Q 025500 155 KIKYIGLSEASPGT---IRRAHAVH-PITAVQMEWSLWTRDIEEEIIPLCREL--GIGIVP 209 (252)
Q Consensus 155 ~ir~iGvs~~~~~~---l~~~~~~~-~~~~~q~~~~~~~~~~~~~l~~~~~~~--gi~v~a 209 (252)
++-.++++. +.+. +.++.+.. ..++++++...-+-....++++..+++ ++.|++
T Consensus 86 l~v~~~vg~-~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~ 145 (326)
T PRK05458 86 LIASISVGV-KDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIA 145 (326)
T ss_pred cEEEEEecC-CHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEE
Confidence 655444443 2333 44444432 247888876664332235555555544 355555
No 233
>PRK05968 hypothetical protein; Provisional
Probab=37.80 E-value=2e+02 Score=25.93 Aligned_cols=54 Identities=7% Similarity=0.010 Sum_probs=36.5
Q ss_pred CCHHHHHHHhhcCCceEEeeecCccccchh-hhHHHHHHHhCCeEEecccCcccc
Q 025500 164 ASPGTIRRAHAVHPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGF 217 (252)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~ 217 (252)
.+.+.+++++...++.+++.+.|+.-.... ..+.+.|+++|+.|+.=..++.+.
T Consensus 136 ~d~~~l~~~i~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~ 190 (389)
T PRK05968 136 RDEEAVAKALPGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPV 190 (389)
T ss_pred CCHHHHHHhcccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchh
Confidence 366777776644455555555565443322 778999999999999887776654
No 234
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=37.51 E-value=2.4e+02 Score=23.51 Aligned_cols=59 Identities=19% Similarity=0.261 Sum_probs=36.5
Q ss_pred CCccEEEccCCCHHHHHHHhhcCC-c--eEE-------------ee---ecCccccchhhhHHHHHHHhCCeEEeccc
Q 025500 154 GKIKYIGLSEASPGTIRRAHAVHP-I--TAV-------------QM---EWSLWTRDIEEEIIPLCRELGIGIVPYSP 212 (252)
Q Consensus 154 G~ir~iGvs~~~~~~l~~~~~~~~-~--~~~-------------q~---~~~~~~~~~~~~l~~~~~~~gi~v~a~sp 212 (252)
+....+=+++|+.+.+.++.+..| + .+. +. .+++.......++++.|+++|+.|.+|..
T Consensus 140 ~~~~~v~v~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~WTv 217 (249)
T PRK09454 140 GAAVPPLLSSFSEDALEAARQAAPELPRGLLLDEWPDDWLELTRRLGCVSLHLNHKLLDEARVAALKAAGLRILVYTV 217 (249)
T ss_pred CCCCCEEEEeCCHHHHHHHHHhCCCCcEEEEeccccccHHHHHHhcCCeEEecccccCCHHHHHHHHHCCCEEEEEeC
Confidence 444567889999988888765422 1 100 00 01111122237899999999999999974
No 235
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=37.09 E-value=92 Score=21.56 Aligned_cols=59 Identities=8% Similarity=0.010 Sum_probs=36.3
Q ss_pred CcccEEEccCCCCCCCHHHHHHHHHHHHHcC-CccEEEccCC-CHHHHHHHhhcCCceEEeeec
Q 025500 124 DYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSEA-SPGTIRRAHAVHPITAVQMEW 185 (252)
Q Consensus 124 d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G-~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~~~ 185 (252)
...|++++.......+. .+.++++++.+ .++-|.+++. +.+...++.+.+-.+++.-++
T Consensus 42 ~~~d~iiid~~~~~~~~---~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~ 102 (112)
T PF00072_consen 42 HPPDLIIIDLELPDGDG---LELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGADDYLSKPF 102 (112)
T ss_dssp STESEEEEESSSSSSBH---HHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTESEEEESSS
T ss_pred cCceEEEEEeeeccccc---cccccccccccccccEEEecCCCCHHHHHHHHHCCCCEEEECCC
Confidence 44899999765554444 45555556555 7888888864 445666666655444444433
No 236
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=36.42 E-value=2.7e+02 Score=23.67 Aligned_cols=49 Identities=18% Similarity=0.093 Sum_probs=30.1
Q ss_pred HHHHHcCCC----cccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCC
Q 025500 116 ASLKRLDVD----YIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS 165 (252)
Q Consensus 116 ~sL~~Lg~d----~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~ 165 (252)
+.+++.|++ ++|-..- ........-++++.++.+++.|.=-.+|+||-+
T Consensus 157 ~~~~~~Gi~~~~Ii~DPg~g-f~ks~~~~~~~l~~i~~l~~~~~pil~G~SrkS 209 (257)
T cd00739 157 EAAESAGVARNRIILDPGIG-FGKTPEHNLELLRRLDELKQLGLPVLVGASRKS 209 (257)
T ss_pred HHHHHcCCCHHHEEEecCCC-cccCHHHHHHHHHHHHHHHhCCCcEEEEecccH
Confidence 345677776 4444221 111111223568888888888888899999965
No 237
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=36.31 E-value=2.5e+02 Score=25.90 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=12.8
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEc
Q 025500 106 APDYVRSCCEASLKRLDVDYIDLYYQ 131 (252)
Q Consensus 106 ~~~~i~~~~~~sL~~Lg~d~iDl~~l 131 (252)
+.+.+.+.++..+ .++++++.++.+
T Consensus 216 t~e~~~~~l~~~~-~l~~~~i~~y~l 240 (453)
T PRK09249 216 TPESFARTLEKVL-ELRPDRLAVFNY 240 (453)
T ss_pred CHHHHHHHHHHHH-hcCCCEEEEccC
Confidence 4455555554444 255555555544
No 238
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=36.28 E-value=94 Score=28.89 Aligned_cols=101 Identities=18% Similarity=0.170 Sum_probs=67.2
Q ss_pred CcHHHHHHHHHhc---CCCCCEEEEeccCccCCCC------cc---cccCCChHHHHHHHHHHHHHcCCCcccEEEccCC
Q 025500 67 NANEVLLGKALKQ---LPREKIQVATKFGIAGIGV------AG---VIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRV 134 (252)
Q Consensus 67 g~se~~ig~~l~~---~~R~~~~i~tK~~~~~~~~------~~---~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~ 134 (252)
|.-|.++.-+-+. -.+.+++++.-++-..-.+ ++ -..+.+.. +.-.||.+.|+|..
T Consensus 148 GTyeT~~~~~r~h~~gdL~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~s-------rI~~Rl~t~y~d~~----- 215 (561)
T COG2987 148 GTYETFAEAGRQHFGGDLKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDES-------RIDKRLRTGYLDEI----- 215 (561)
T ss_pred chHHHHHHHHHHhcCCCccceEEEecCCCcccccchHHHHhcCceEEEEEeCHH-------HHHHHHhcchhhhh-----
Confidence 4455555444333 4577899999988654221 00 01122232 33456777787742
Q ss_pred CCCCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhc-CCceEE
Q 025500 135 DTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV-HPITAV 181 (252)
Q Consensus 135 ~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~ 181 (252)
...++|++...++..++|+-.+||+-..-.+.+.++++. ..++++
T Consensus 216 --a~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~v 261 (561)
T COG2987 216 --AETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLV 261 (561)
T ss_pred --cCCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCcee
Confidence 346889999999999999999999999888999999876 345544
No 239
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=36.18 E-value=3.7e+02 Score=25.19 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=20.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEeC
Q 025500 37 PVSEEDGISMIKHAFSKGITFFDT 60 (252)
Q Consensus 37 ~~~~~~~~~~l~~A~~~Gin~~Dt 60 (252)
+++.++..+++...-+.|+..|+.
T Consensus 21 ~~~t~dkl~Ia~~Ld~~Gv~~IE~ 44 (467)
T PRK14041 21 RMRTEDMLPALEAFDRMGFYSMEV 44 (467)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEe
Confidence 357889999999999999999997
No 240
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=36.12 E-value=3.2e+02 Score=24.53 Aligned_cols=101 Identities=11% Similarity=0.082 Sum_probs=55.6
Q ss_pred HHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhc-CCceEEeeecCccccc
Q 025500 113 CCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV-HPITAVQMEWSLWTRD 191 (252)
Q Consensus 113 ~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~ 191 (252)
++...+..| ++.=|-+++..+.. ...+..+..+...-.++..-+...+.+.+++++.. .+..++..+.|+.-..
T Consensus 88 Ai~~~l~al-l~~Gd~Vl~~~~~y----~~t~~~~~~~~~~~gi~~~~~d~~d~e~l~~~i~~~tklV~ie~p~NPtg~~ 162 (388)
T PRK07811 88 ATDCLLRAV-LRPGDHIVIPNDAY----GGTFRLIDKVFTRWGVEYTPVDLSDLDAVRAAITPRTKLIWVETPTNPLLSI 162 (388)
T ss_pred HHHHHHHHH-hCCCCEEEEcCCCc----hHHHHHHHHhCcCCCeEEEEeCCCCHHHHHHhcCcCCeEEEEECCCCCccee
Confidence 334444443 33446666655433 22333333332221233333334577888777643 3344444566654332
Q ss_pred h-hhhHHHHHHHhCCeEEecccCccccC
Q 025500 192 I-EEEIIPLCRELGIGIVPYSPLGRGFF 218 (252)
Q Consensus 192 ~-~~~l~~~~~~~gi~v~a~spl~~G~L 218 (252)
. -..+.+.|+++|+.++.=..++.+..
T Consensus 163 ~dl~~I~~la~~~gi~lIvD~a~a~~~~ 190 (388)
T PRK07811 163 TDIAALAELAHDAGAKVVVDNTFASPYL 190 (388)
T ss_pred cCHHHHHHHHHHcCCEEEEECCCCcccc
Confidence 2 27899999999999998888776643
No 241
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=36.08 E-value=2.4e+02 Score=23.11 Aligned_cols=107 Identities=15% Similarity=0.107 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhc--CCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEA 116 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~--~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (252)
++++-.++++.+++.|+.++|.--.. ..+.+.++. ..+.+++++..-.... .+.+.+...+++
T Consensus 74 ~~~~~~~ll~~~~~~~~d~vDiEl~~------~~~~~~~~~~~~~~~kiI~S~H~f~~t---------p~~~~l~~~~~~ 138 (225)
T cd00502 74 SEEEYLELLEEALKLGPDYVDIELDS------ALLEELINSRKKGNTKIIGSYHDFSGT---------PSDEELVSRLEK 138 (225)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEecc------hHHHHHHHHHHhCCCEEEEEeccCCCC---------cCHHHHHHHHHH
Confidence 67788899999999999999964221 122233332 2556677766644322 135566655554
Q ss_pred HHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccC
Q 025500 117 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE 163 (252)
Q Consensus 117 sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~ 163 (252)
+..+|.|.+-+... +....+....+....+++....+..|+++.
T Consensus 139 -~~~~gadivKla~~--~~~~~D~~~ll~~~~~~~~~~~~p~i~~~M 182 (225)
T cd00502 139 -MAALGADIVKIAVM--ANSIEDNLRLLKFTRQVKNLYDIPLIAINM 182 (225)
T ss_pred -HHHhCCCEEEEEec--CCCHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 55677666666554 222334445555555555543344444443
No 242
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=35.98 E-value=2.5e+02 Score=23.25 Aligned_cols=140 Identities=12% Similarity=0.093 Sum_probs=73.8
Q ss_pred HHHHHHCCCCEEeC-cCCcCCCcHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHHHHHcCCCc
Q 025500 47 IKHAFSKGITFFDT-ADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDY 125 (252)
Q Consensus 47 l~~A~~~Gin~~Dt-a~~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~ 125 (252)
|....+. +|.++. +..|.. .+++.+.+|.++ -.+++..+.|+...-.. ...-....+.+.+.+-+.++-|| +.
T Consensus 12 L~~Ya~~-F~~VEvn~TFY~~-P~~~t~~~W~~~-~p~~F~F~vK~~~~iTH--~~~l~~~~~~~~~~F~~~~~~L~-~k 85 (230)
T PF01904_consen 12 LAYYARH-FNTVEVNSTFYRI-PSPETVARWREQ-TPEGFRFSVKAPQLITH--ERRLRDCAEELWRRFLEALEPLG-EK 85 (230)
T ss_dssp HHHHCCT--SEEEE-HHCCSS-S-HHHHHHHHCT-S-TT-EEEEE--CCCCC--CCHCGSSHHHHHHHHHHHCHHHH-T-
T ss_pred HHHHHHh-CCeEEECcccCCC-CCHHHHHHHHhh-CCCCeEEEEeccHHhee--cccccccHHHHHHHHHHHHHHHh-hc
Confidence 3333333 566654 335654 488899999885 55789999999864421 00111235666466666999998 89
Q ss_pred ccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhcCCceEEeeecCccccchhhhHHHHHHHhCC
Q 025500 126 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGI 205 (252)
Q Consensus 126 iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi 205 (252)
+..+++.-|..-....+.++.|..+.+.=. . ...-.+.++---|. ..+++++++++|+
T Consensus 86 lg~iL~Q~Ppsf~~~~~~~~~l~~~l~~~~------------------~-~~~~avE~R~~sW~---~~~~~~~l~~~~~ 143 (230)
T PF01904_consen 86 LGPILFQFPPSFRFTPENLERLDAFLDRLP------------------R-GFRYAVEFRHPSWF---TEEVFELLREHGV 143 (230)
T ss_dssp EEEEEEE--TT--S-HHHHHHHHHHHHHTT--------------------TS-EEEE--BGGGG---CHHHHHHHHHTT-
T ss_pred ceEEEEEcCCCcCCCHHHHHHHHHHHhhcc------------------c-ccceEEecCCcchh---hHHHHHHHHHcCC
Confidence 999999999764444566666665554421 0 11222333221122 2689999999999
Q ss_pred eEEecccCc
Q 025500 206 GIVPYSPLG 214 (252)
Q Consensus 206 ~v~a~spl~ 214 (252)
..+.-....
T Consensus 144 ~~v~~d~~~ 152 (230)
T PF01904_consen 144 ALVIADSPR 152 (230)
T ss_dssp EEEEEE---
T ss_pred EEEEeCCcc
Confidence 877544433
No 243
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=35.66 E-value=1.5e+02 Score=27.50 Aligned_cols=77 Identities=17% Similarity=0.240 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhcC---CceEEe---e--------------ecCccccchhhhHHH
Q 025500 139 PIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVH---PITAVQ---M--------------EWSLWTRDIEEEIIP 198 (252)
Q Consensus 139 ~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~---~~~~~q---~--------------~~~~~~~~~~~~l~~ 198 (252)
++++.++.+.+++++. .+.+.+.++.... +++..+ . -||.+. ++.++
T Consensus 199 ~~~~~~~~~a~~v~~~---------vDld~l~~ia~~~~~~~~~~~~~~~~~~~~~~rIAVA~D~AF~FyY----~~nl~ 265 (451)
T COG1797 199 ELEAKLEALAEVVEKH---------VDLDALLEIASSAGPLEPDLSPEPERGNPLGVRIAVARDAAFNFYY----PENLE 265 (451)
T ss_pred hHHHHHHHHHHHHHhh---------CCHHHHHHHHhccCCCCCCccccccccCCcCceEEEEecchhcccc----HHHHH
Confidence 4567788888888763 3667666665531 111111 1 122222 68999
Q ss_pred HHHHhCCeEEecccCccccCCCC----CCCCCCC
Q 025500 199 LCRELGIGIVPYSPLGRGFFGGK----AVVENVP 228 (252)
Q Consensus 199 ~~~~~gi~v~a~spl~~G~L~~~----~~~~~~~ 228 (252)
..++.|-.++-+|||..-.|-.. |.+...|
T Consensus 266 ~Lr~~GAelv~FSPL~D~~lP~~~D~vYlgGGYP 299 (451)
T COG1797 266 LLREAGAELVFFSPLADEELPPDVDAVYLGGGYP 299 (451)
T ss_pred HHHHCCCEEEEeCCcCCCCCCCCCCEEEeCCCCh
Confidence 99999999999999996565532 4444444
No 244
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=35.59 E-value=3.3e+02 Score=24.46 Aligned_cols=93 Identities=15% Similarity=0.170 Sum_probs=57.3
Q ss_pred CCCEEEEeccCccCC------CCcccccCCChHHHHHHHHHHHHHcCCC---cccEEEccCCCC-CCCHHHHHHHHHHHH
Q 025500 82 REKIQVATKFGIAGI------GVAGVIVKGAPDYVRSCCEASLKRLDVD---YIDLYYQHRVDT-SVPIEETIGEMKKLV 151 (252)
Q Consensus 82 R~~~~i~tK~~~~~~------~~~~~~~~~~~~~i~~~~~~sL~~Lg~d---~iDl~~lh~~~~-~~~~~~~~~~L~~l~ 151 (252)
|.-+.|||.+|=.-. +..+..++++...|..|+....++++.. .+.=+.+-...+ ...++.+..+++.+.
T Consensus 100 r~tlCVSsQvGC~~~C~FCaTg~~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEPl~N~dnV~~a~~i~~ 179 (349)
T COG0820 100 RNTLCVSSQVGCPVGCTFCATGQGGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEPLLNLDNVVKALEIIN 179 (349)
T ss_pred CceEEEecCCCcCCCCCeeccccccceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecCCchhhhHHHHHHHHHhhc
Confidence 445667777664321 1235678899999999999999999874 233222222222 223456777777777
Q ss_pred Hc-CC---ccEEEccCCC-HHHHHHHhh
Q 025500 152 EE-GK---IKYIGLSEAS-PGTIRRAHA 174 (252)
Q Consensus 152 ~~-G~---ir~iGvs~~~-~~~l~~~~~ 174 (252)
+. |. .|+|=||+.. ...|.++.+
T Consensus 180 ~~~G~~ls~R~iTvSTsGi~~~I~~l~~ 207 (349)
T COG0820 180 DDEGLGLSKRRITVSTSGIVPRIRKLAD 207 (349)
T ss_pred CcccccccceEEEEecCCCchhHHHHHh
Confidence 33 32 2778888877 456666664
No 245
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=35.59 E-value=1e+02 Score=24.35 Aligned_cols=64 Identities=20% Similarity=0.196 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHcCCCcc----cEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhc
Q 025500 110 VRSCCEASLKRLDVDYI----DLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV 175 (252)
Q Consensus 110 i~~~~~~sL~~Lg~d~i----Dl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 175 (252)
..+.++..++++|.+.- +.+.-.+ .......++.+.|+.|+++| ++-.-+||.+...+...++.
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~ 128 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLAEAY-LRLPPHPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKH 128 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHH
Confidence 34566677777776421 1111111 11123456788899999887 56666888887776666544
No 246
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=35.51 E-value=3.7e+02 Score=24.95 Aligned_cols=145 Identities=17% Similarity=0.190 Sum_probs=88.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCC-CcHHHHHHHHHhc-CCC-CCEEEEeccCccCCCCcccccCCChHHHHHHHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQ-NANEVLLGKALKQ-LPR-EKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCE 115 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~-g~se~~ig~~l~~-~~R-~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (252)
......+++..+++.|.. ||. ...|..+++.+.+ .+- +.+.+++- ..+....+++
T Consensus 70 ~~p~V~~Av~~~l~~G~~-------fg~Pte~Ei~~Aell~~~~p~~e~vrfvnS---------------GTEAtmsAiR 127 (432)
T COG0001 70 AHPAVVEAVQEQLERGLS-------FGAPTELEVELAELLIERVPSIEKVRFVNS---------------GTEATMSAIR 127 (432)
T ss_pred CCHHHHHHHHHHHHhcCC-------CCCCCHHHHHHHHHHHHhcCcccEEEEecc---------------hhHHHHHHHH
Confidence 345588899999999974 542 3478888888887 454 55544332 2667778888
Q ss_pred HHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcC-------CccEEEcc-----------CCCHHHHHHHhhcC-
Q 025500 116 ASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-------KIKYIGLS-----------EASPGTIRRAHAVH- 176 (252)
Q Consensus 116 ~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G-------~ir~iGvs-----------~~~~~~l~~~~~~~- 176 (252)
-..--.|.|.|=.|-=+++..... -|++.| .-.+-|+- =.+.+.++++.+..
T Consensus 128 lARa~TgR~kIikF~G~YHG~~D~---------~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yND~~al~~~~~~~g 198 (432)
T COG0001 128 LARAYTGRDKIIKFEGCYHGHSDS---------LLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYNDLEALEEAFEEYG 198 (432)
T ss_pred HHHHhhCCCeEEEEcCCCCCCccH---------HHhhcCcCcccCCCCCCCCCChhhhccEEEecCCCHHHHHHHHHHcC
Confidence 888888887665554444422111 112221 11222222 23567777777664
Q ss_pred -CceEEee-----ecCccccchh--hhHHHHHHHhCCeEEecccCc
Q 025500 177 -PITAVQM-----EWSLWTRDIE--EEIIPLCRELGIGIVPYSPLG 214 (252)
Q Consensus 177 -~~~~~q~-----~~~~~~~~~~--~~l~~~~~~~gi~v~a~spl~ 214 (252)
.++++-+ +..+..+..+ ..+.+.|+++|+-+|--....
T Consensus 199 ~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViT 244 (432)
T COG0001 199 DDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVIT 244 (432)
T ss_pred CcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchh
Confidence 4555543 4555555444 889999999999988655543
No 247
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=35.45 E-value=3.8e+02 Score=26.65 Aligned_cols=147 Identities=17% Similarity=0.088 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHHHH
Q 025500 40 EEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLK 119 (252)
Q Consensus 40 ~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 119 (252)
-+-+.+++++|.+.|++.+- .|. |+--...=+ ..-++-++.-|..+.-. .+- -...+-+..+
T Consensus 42 gEIaIRvFRa~tEL~~~tvA---iYs----eqD~~sMHR-qKADEaY~iGk~l~PV~---------AYL-~ideii~iak 103 (1176)
T KOG0369|consen 42 GEIAIRVFRAATELSMRTVA---IYS----EQDRLSMHR-QKADEAYLIGKGLPPVG---------AYL-AIDEIISIAK 103 (1176)
T ss_pred CcchhHHHHHHhhhcceEEE---EEe----ccchhhhhh-hccccceecccCCCchh---------hhh-hHHHHHHHHH
Confidence 36679999999999998766 773 443333223 56677888888743221 111 2223334444
Q ss_pred HcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhc---------CCceEEeeecCcccc
Q 025500 120 RLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV---------HPITAVQMEWSLWTR 190 (252)
Q Consensus 120 ~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~---------~~~~~~q~~~~~~~~ 190 (252)
+-++| .+ | |... -+.|--+.-..+.++ -|+.||=|- +.++..-++ ....++---=.+...
T Consensus 104 ~~~vd---av--H-PGYG-FLSErsdFA~av~~A-Gi~fiGPsp---eVi~~mGDKv~AR~~Ai~agVpvVPGTpgPitt 172 (1176)
T KOG0369|consen 104 KHNVD---AV--H-PGYG-FLSERSDFAQAVQDA-GIRFIGPSP---EVIDSMGDKVAARAIAIEAGVPVVPGTPGPITT 172 (1176)
T ss_pred HcCCC---ee--c-CCcc-ccccchHHHHHHHhc-CceEeCCCH---HHHHHhhhHHHHHHHHHHcCCCccCCCCCCccc
Confidence 55443 32 3 2221 122222333344444 478899764 433332111 111111111111111
Q ss_pred chhhhHHHHHHHhCCeEEecccCcccc
Q 025500 191 DIEEEIIPLCRELGIGIVPYSPLGRGF 217 (252)
Q Consensus 191 ~~~~~l~~~~~~~gi~v~a~spl~~G~ 217 (252)
.++.++||+++|.+||-...++||-
T Consensus 173 --~~EA~eF~k~yG~PvI~KAAyGGGG 197 (1176)
T KOG0369|consen 173 --VEEALEFVKEYGLPVIIKAAYGGGG 197 (1176)
T ss_pred --HHHHHHHHHhcCCcEEEeecccCCC
Confidence 2789999999999999999998773
No 248
>COG1540 Uncharacterized proteins, homologs of lactam utilization protein B [General function prediction only]
Probab=35.26 E-value=51 Score=27.77 Aligned_cols=32 Identities=16% Similarity=0.389 Sum_probs=22.5
Q ss_pred eecccccCC---------------CCCCCCCHHHHHHHHHHHHHCCCC
Q 025500 24 GYGCMNLSG---------------GYSSPVSEEDGISMIKHAFSKGIT 56 (252)
Q Consensus 24 glG~~~~g~---------------~~~~~~~~~~~~~~l~~A~~~Gin 56 (252)
|||.|++|. .|+.- |+....+.++.|.+.||.
T Consensus 13 ~fG~w~mG~De~~l~lvsSANIACGfHAG-Dp~~M~rtV~lA~e~gV~ 59 (252)
T COG1540 13 GFGAWRMGDDEALLPLVSSANIACGFHAG-DPLTMRRTVRLAKENGVA 59 (252)
T ss_pred ccCCcccCCcHHHHHHHhhhhHhhcccCC-CHHHHHHHHHHHHHcCCe
Confidence 678887774 23333 677778888888888775
No 249
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=35.23 E-value=3.2e+02 Score=24.22 Aligned_cols=94 Identities=14% Similarity=0.092 Sum_probs=52.4
Q ss_pred CCCEEEEeccCccCCCCcccccCCChHHHHHHHHHHHHHcC-CCcccEEEccCCCCC-------------CCHHHHHHHH
Q 025500 82 REKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLD-VDYIDLYYQHRVDTS-------------VPIEETIGEM 147 (252)
Q Consensus 82 R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg-~d~iDl~~lh~~~~~-------------~~~~~~~~~L 147 (252)
..++.|..|+.......+ ..+.+... .+-+.|+..| +|+++ +|..... ..-.-.|+..
T Consensus 206 g~~~~v~iRl~~~~~~~~----G~~~~e~~-~~~~~l~~~G~vd~i~---vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (343)
T cd04734 206 GPDFIVGIRISGDEDTEG----GLSPDEAL-EIAARLAAEGLIDYVN---VSAGSYYTLLGLAHVVPSMGMPPGPFLPLA 277 (343)
T ss_pred CCCCeEEEEeehhhccCC----CCCHHHHH-HHHHHHHhcCCCCEEE---eCCCCCCcccccccccCCCCCCcchhHHHH
Confidence 457788888876442111 13343333 3445566666 55555 4321100 0111135666
Q ss_pred HHHHHcCCccEEEccC-CCHHHHHHHhhcCCceEEee
Q 025500 148 KKLVEEGKIKYIGLSE-ASPGTIRRAHAVHPITAVQM 183 (252)
Q Consensus 148 ~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~ 183 (252)
+..++.=.+--|++.+ .+++.++++++....+.+.+
T Consensus 278 ~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~ 314 (343)
T cd04734 278 ARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGM 314 (343)
T ss_pred HHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeee
Confidence 6666665677788877 47888888887766666655
No 250
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=34.99 E-value=3.6e+02 Score=24.67 Aligned_cols=138 Identities=14% Similarity=0.131 Sum_probs=75.4
Q ss_pred cCCCCCCCC-CHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhc--CCCCCEEEEeccCccCCCCcccccCCC
Q 025500 30 LSGGYSSPV-SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ--LPREKIQVATKFGIAGIGVAGVIVKGA 106 (252)
Q Consensus 30 ~g~~~~~~~-~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~--~~R~~~~i~tK~~~~~~~~~~~~~~~~ 106 (252)
.|..|.+.+ +.....+-=-+|+|.|+--+-+|..- +-.. -++-. ..-+.|+-+++++-.
T Consensus 52 ~G~iYsRi~NPT~~vlE~RiAaLEGG~aa~a~aSG~----AA~~--~ai~~la~aGD~iVss~~LYGG------------ 113 (426)
T COG2873 52 PGNIYTRIMNPTTDVLEERIAALEGGVAALAVASGQ----AAIT--YAILNLAGAGDNIVSSSKLYGG------------ 113 (426)
T ss_pred CCceeeeccCchHHHHHHHHHHhhcchhhhhhccch----HHHH--HHHHHhccCCCeeEeeccccCc------------
Confidence 344444432 33556666678999999877777532 2222 22333 466888888888642
Q ss_pred hHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhcCCceEEeeecC
Q 025500 107 PDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQMEWS 186 (252)
Q Consensus 107 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~ 186 (252)
-...+.-+|+++|+ +.-++...+ . +.| ++..++ +.|.| ++..-=|
T Consensus 114 ---T~~lf~~tl~~~Gi---~v~fvd~~d----~-~~~---~~aI~~-nTkav--------------------f~EtigN 158 (426)
T COG2873 114 ---TYNLFSHTLKRLGI---EVRFVDPDD----P-ENF---EAAIDE-NTKAV--------------------FAETIGN 158 (426)
T ss_pred ---hHHHHHHHHHhcCc---EEEEeCCCC----H-HHH---HHHhCc-ccceE--------------------EEEeccC
Confidence 23577788999996 444443322 1 122 222211 22222 2222112
Q ss_pred ccccc-hhhhHHHHHHHhCCeEEecccCccccCCC
Q 025500 187 LWTRD-IEEEIIPLCRELGIGIVPYSPLGRGFFGG 220 (252)
Q Consensus 187 ~~~~~-~~~~l~~~~~~~gi~v~a~spl~~G~L~~ 220 (252)
+-..- .-+.+.+.|+++|+.++.-+.++...|..
T Consensus 159 P~~~v~Die~ia~iAh~~gvpliVDNT~atpyl~r 193 (426)
T COG2873 159 PGLDVLDIEAIAEIAHRHGVPLIVDNTFATPYLCR 193 (426)
T ss_pred CCccccCHHHHHHHHHHcCCcEEEecCCCcceecc
Confidence 21111 11678888888888888888887665544
No 251
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=34.95 E-value=2.1e+02 Score=25.87 Aligned_cols=123 Identities=15% Similarity=0.078 Sum_probs=68.0
Q ss_pred CHHHHHHHHHHHHHCCCC-EEeCcCCcCCCcHHHHHHHHHhc----C--CCCCEEEEeccCccCC----CC---cccccC
Q 025500 39 SEEDGISMIKHAFSKGIT-FFDTADVYGQNANEVLLGKALKQ----L--PREKIQVATKFGIAGI----GV---AGVIVK 104 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin-~~Dta~~Yg~g~se~~ig~~l~~----~--~R~~~~i~tK~~~~~~----~~---~~~~~~ 104 (252)
+.+....+.+.+...|++ +++|.-.- ..+.+-++++. . .+.-..+.-.+--+.. +. .++.+.
T Consensus 75 ~~e~~~~~~~~~~~~GvTt~l~t~~t~----~~~~~~~~l~~~~~~~~~~~~a~~lG~HlEGPfi~~~~~Gah~~~~i~~ 150 (380)
T TIGR00221 75 SFETLEIMSERLPKSGCTSFLPTLITQ----PDENIKQAVKNMREYLAKEKNAQALGLHLEGPFLSPEKKGAHPPEYIRE 150 (380)
T ss_pred CHHHHHHHHHHHHhcCeeEEeeeccCC----CHHHHHHHHHHHHHHHhccCCceeeeEeeecCcCChhhcCCCCHHHhhC
Confidence 567888899999999998 67776432 22223333332 1 1111222222221111 11 112233
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhc
Q 025500 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV 175 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 175 (252)
.+.+.+++-++.+ + +.+-++-+- |+ .....+.++.|+++|.+-++|=|+-+.+++.++.+.
T Consensus 151 p~~~~~~~~~~~~----~-~~i~~vTlA-PE----~~~~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~ 211 (380)
T TIGR00221 151 PDVELFKKFLCEA----G-GVITKVTLA-PE----EDQHFELIRHLKDAGIIVSAGHTNATYELAKAAFKA 211 (380)
T ss_pred cCHHHHHHHHHhc----C-CCEEEEEEC-CC----CCChHHHHHHHHHCCeEEEeeCCCCCHHHHHHHHHc
Confidence 4444444333322 2 234444441 21 223567889999999999999999999999998765
No 252
>PTZ00413 lipoate synthase; Provisional
Probab=34.90 E-value=3.6e+02 Score=24.68 Aligned_cols=161 Identities=15% Similarity=0.244 Sum_probs=86.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEeCcCCcCCC---cHHHHHHHHHhcCCC--CCEEEEeccCccCCCCcccccCCChHHHH
Q 025500 37 PVSEEDGISMIKHAFSKGITFFDTADVYGQN---ANEVLLGKALKQLPR--EKIQVATKFGIAGIGVAGVIVKGAPDYVR 111 (252)
Q Consensus 37 ~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g---~se~~ig~~l~~~~R--~~~~i~tK~~~~~~~~~~~~~~~~~~~i~ 111 (252)
..|+++..+.-+++.+.|++|+=.+....+. ..-..+.++++.++. .++.|..=++-.. .+.+.+.
T Consensus 176 ~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~~a~~I~~Ir~~~p~~~IevligDf~---------g~~e~l~ 246 (398)
T PTZ00413 176 PLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGASHVARCVELIKESNPELLLEALVGDFH---------GDLKSVE 246 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHHHHHHHHHHHHccCCCCeEEEcCCccc---------cCHHHHH
Confidence 3588999999999999999976544443321 122444455555333 3466655554221 1232222
Q ss_pred HHHHHHHHHcCCCcccEEEccCCCC-----------CCCHHHHHHHHHHHHHc--CCcc-----EEEccCCCHHHHHHHh
Q 025500 112 SCCEASLKRLDVDYIDLYYQHRVDT-----------SVPIEETIGEMKKLVEE--GKIK-----YIGLSEASPGTIRRAH 173 (252)
Q Consensus 112 ~~~~~sL~~Lg~d~iDl~~lh~~~~-----------~~~~~~~~~~L~~l~~~--G~ir-----~iGvs~~~~~~l~~~~ 173 (252)
. |..-| +|.|. ||.+. ....++.|+.|+..++. +.+. -||+..-..+.++-+.
T Consensus 247 ~-----L~eAG---~dvyn-HNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET~eEvie~m~ 317 (398)
T PTZ00413 247 K-----LANSP---LSVYA-HNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGETEEEVRQTLR 317 (398)
T ss_pred H-----HHhcC---CCEEe-cccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCCCHHHHHHHHH
Confidence 2 33333 34333 55322 23577889999988875 3332 2565554433332222
Q ss_pred hc--CCceEEee-----------ecCccccchh-hhHHHHHHHhCCeEEecccCcc
Q 025500 174 AV--HPITAVQM-----------EWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGR 215 (252)
Q Consensus 174 ~~--~~~~~~q~-----------~~~~~~~~~~-~~l~~~~~~~gi~v~a~spl~~ 215 (252)
.. ..++++.+ +..-|.+..+ ..+-+.+.+.|...++..||-.
T Consensus 318 dLrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v~sgPlVR 373 (398)
T PTZ00413 318 DLRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYCASGPLVR 373 (398)
T ss_pred HHHHcCCcEEeeccccCCCcccCCceeccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 21 22333322 1111222222 6778888999999999999864
No 253
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=34.81 E-value=2.3e+02 Score=25.37 Aligned_cols=88 Identities=7% Similarity=0.005 Sum_probs=48.3
Q ss_pred cEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhc-CCceEEeeecCccccch-hhhHHHHHHHhC
Q 025500 127 DLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV-HPITAVQMEWSLWTRDI-EEEIIPLCRELG 204 (252)
Q Consensus 127 Dl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~-~~~l~~~~~~~g 204 (252)
|-+++..+.. ......+..+.+.-.++..-+...+++.++++++. ....++..+.|+.-.-. -+++.+.|+++|
T Consensus 86 d~Vl~~~~~y----~~~~~~~~~~~~~~G~~v~~vd~~d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g 161 (378)
T TIGR01329 86 DEIIAGDDLY----GGTDRLLTQVVPRSGVVVVHVDTTDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQN 161 (378)
T ss_pred CEEEEcCCCc----hHHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcC
Confidence 5555544322 22333333333332333344444467777776642 23444444555543322 278999999999
Q ss_pred CeEEecccCccccC
Q 025500 205 IGIVPYSPLGRGFF 218 (252)
Q Consensus 205 i~v~a~spl~~G~L 218 (252)
+.++.=..++.+..
T Consensus 162 ~~vivD~a~~~~~~ 175 (378)
T TIGR01329 162 ALVVVDNTMMSPLL 175 (378)
T ss_pred CEEEEECCCccccc
Confidence 99998887765543
No 254
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=34.72 E-value=1.4e+02 Score=21.74 Aligned_cols=51 Identities=16% Similarity=0.102 Sum_probs=26.7
Q ss_pred cCCCHHHHHHHhhcCCceEEeeecCccccchhhhHHHHHHHhCCeEEeccc
Q 025500 162 SEASPGTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSP 212 (252)
Q Consensus 162 s~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~sp 212 (252)
+..+.+.+..+....+++++-+--.-..+...+++.++++++||++..+..
T Consensus 37 ~~l~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T 87 (109)
T cd00248 37 SDLDPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMST 87 (109)
T ss_pred ccCCHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCc
Confidence 344455555554432244443322111111226788888899888887654
No 255
>PF01619 Pro_dh: Proline dehydrogenase; InterPro: IPR002872 The proline oxidase/dehydrogenase 1.5.99.8 from EC is responsible for the first step in the conversion of proline to glutamate for use as a carbon and nitrogen source. The enzyme requires FAD as a cofactor, and is induced by proline.; GO: 0004657 proline dehydrogenase activity, 0006537 glutamate biosynthetic process, 0006562 proline catabolic process, 0055114 oxidation-reduction process; PDB: 2G37_A 2EKG_B 4F9I_B 3HAZ_A 2FZM_A 3E2Q_A 3E2S_A 2FZN_A 1K87_A 1TJ2_A ....
Probab=34.72 E-value=57 Score=28.59 Aligned_cols=158 Identities=13% Similarity=0.184 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHCCCC-EEeCcCCcCCCcHHHHHHHHHh---c--CCCCCEEEEeccCccCCCCcccccCCChHHHHHHH
Q 025500 41 EDGISMIKHAFSKGIT-FFDTADVYGQNANEVLLGKALK---Q--LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (252)
Q Consensus 41 ~~~~~~l~~A~~~Gin-~~Dta~~Yg~g~se~~ig~~l~---~--~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 114 (252)
+...++++.|.+.|+. +||.=+.+- -+.++--+.+ . ..+..+.++-.....+ +++.+.+.+
T Consensus 92 ~~l~~i~~~A~~~~v~v~iDaE~~~~---~~~~~~~~~~~~~~~~~~~~~vg~tlQaYL~~----------t~~~l~~l~ 158 (313)
T PF01619_consen 92 ERLRRICERAKEHGVFVLIDAEESWY---QDAILDLFLELMRKYNKGWPNVGITLQAYLKR----------TPDDLERLL 158 (313)
T ss_dssp HHHHHHHHHHHHTTEEEEE----GGG---HHHHHHHHHHHCCHHGTT--SEEEEEETTBTT----------HHHHHHHHH
T ss_pred HHHHHHHHHhhcCCcEEEEcCCCccc---hHHHHHHHHHHhhHhhCCCCeEEEEEechhhc----------hHHHHHHHH
Confidence 4667889999999998 678655443 3333332222 2 3455677777766544 466666666
Q ss_pred HHHHHHcCCCcccEEEc-----------------cCCCCCC---CHHHHHHHHHHHHHcCC-c--cEEEccCCCHHHHHH
Q 025500 115 EASLKRLDVDYIDLYYQ-----------------HRVDTSV---PIEETIGEMKKLVEEGK-I--KYIGLSEASPGTIRR 171 (252)
Q Consensus 115 ~~sL~~Lg~d~iDl~~l-----------------h~~~~~~---~~~~~~~~L~~l~~~G~-i--r~iGvs~~~~~~l~~ 171 (252)
+.+-+ .|. .+-+=++ +.+.... ..+.....+..+..++. - -+++|.+|+...+..
T Consensus 159 ~~a~~-~g~-~~~vRLVkGAY~e~E~~~a~~~g~~~~~~~~~k~~~d~~y~~~~~~l~~~~~~~~~~~~vATHn~~si~~ 236 (313)
T PF01619_consen 159 ELARR-RGF-RLGVRLVKGAYLESERKRAQQHGYPDPPAFTDKATTDANYRRLARLLLEGGDAPKVYPMVATHNERSIAL 236 (313)
T ss_dssp HHHHH-TTS--EEEEEE--SSHHHHHHHHHHTTTSS-SB-SSHHHHHHHHHHHHHHHHCTTTT--EEEEEE---HHHHHH
T ss_pred HHHHH-cCC-eEEEEEecCCCCCchhHHHHHcCCCCCCCCCchhhhHHHHHHHHHHHhcccccceeeeeccCCCHHHHHH
Confidence 55543 121 1222111 1111111 12234556666665554 3 689999999987766
Q ss_pred Hhhc---C--CceEEeeecCccccchhhhHHHHHHHhCCeEEecccCc
Q 025500 172 AHAV---H--PITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLG 214 (252)
Q Consensus 172 ~~~~---~--~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~ 214 (252)
+.+. . +..--+++|-.+..- .+++-....+.|..|.-|-|+|
T Consensus 237 a~~l~~~~~~~~~~~~~efq~L~Gm-~d~l~~~L~~~g~~v~~YvP~G 283 (313)
T PF01619_consen 237 ALELAEELGIPPNDDRVEFQQLYGM-ADDLSRALAQAGYRVRKYVPYG 283 (313)
T ss_dssp HHHHHHCTT-GG--GGEEEEEETTS-SHHHHHHHHHHTSEEEEEEEES
T ss_pred HHHHHHHcCCCcccccEEeehhccC-CHHHHHHHHhCCCCEEEEEecC
Confidence 6443 1 211112233222221 2567777889999999999998
No 256
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=34.71 E-value=2e+02 Score=23.86 Aligned_cols=130 Identities=20% Similarity=0.119 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHH-----HHHHH
Q 025500 41 EDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYV-----RSCCE 115 (252)
Q Consensus 41 ~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i-----~~~~~ 115 (252)
++..+.++.|.+.|++-+=+.+.|. ....+.+.. .+-++-+..++.... ...+.- ...++
T Consensus 19 ~~~~~~~~~a~~~~~~av~v~p~~~-----~~~~~~~~~-~~~~~~~vi~fp~g~---------~~~~~k~~~~~~~~ve 83 (236)
T PF01791_consen 19 EDIKKLCREAIEYGFDAVCVTPGYV-----KPAAELLAG-SGVKVGLVIGFPFGT---------STTEPKGYDQIVAEVE 83 (236)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEGGGH-----HHHHHHSTT-STSEEEEEESTTTSS---------STHHHHTCEEEHHHHH
T ss_pred hhHHHHHHHHHHhCCCEEEECHHHH-----HHHHHHhhc-cccccceEEEeCCCC---------CccccccccchHHHHH
Confidence 3889999999999999888887774 233333332 233666666665433 122222 45666
Q ss_pred HHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHc---CCccEEEccCCCHH---------HHHHHhhc---CCceE
Q 025500 116 ASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEE---GKIKYIGLSEASPG---------TIRRAHAV---HPITA 180 (252)
Q Consensus 116 ~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~---G~ir~iGvs~~~~~---------~l~~~~~~---~~~~~ 180 (252)
+. -++|.|-+|+++-..+..........+.+.+++++ --+..|--+-...+ .+..+.+. ...++
T Consensus 84 ~A-~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~ 162 (236)
T PF01791_consen 84 EA-IRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADF 162 (236)
T ss_dssp HH-HHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SE
T ss_pred HH-HHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCE
Confidence 66 57899999999987554333344555555555544 22344433322222 24444332 56677
Q ss_pred EeeecC
Q 025500 181 VQMEWS 186 (252)
Q Consensus 181 ~q~~~~ 186 (252)
+...+.
T Consensus 163 vKt~tg 168 (236)
T PF01791_consen 163 VKTSTG 168 (236)
T ss_dssp EEEE-S
T ss_pred EEecCC
Confidence 777766
No 257
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=34.35 E-value=3.4e+02 Score=24.25 Aligned_cols=87 Identities=14% Similarity=0.172 Sum_probs=55.7
Q ss_pred EEccCCCCC-----------CCHHHHHHHHHHHHHcC--C--ccEEEcc--CCCHHHHHHHhh---cCCceEEeeecCcc
Q 025500 129 YYQHRVDTS-----------VPIEETIGEMKKLVEEG--K--IKYIGLS--EASPGTIRRAHA---VHPITAVQMEWSLW 188 (252)
Q Consensus 129 ~~lh~~~~~-----------~~~~~~~~~L~~l~~~G--~--ir~iGvs--~~~~~~l~~~~~---~~~~~~~q~~~~~~ 188 (252)
+-+|.+++. ..++++++++.+....+ + ++++=+. |.+.+.++++.+ ..+..++-++||+.
T Consensus 211 iSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPyn~~ 290 (349)
T PRK14463 211 VSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPFNEH 290 (349)
T ss_pred EeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEecCCC
Confidence 568888542 23567788877776654 2 3445444 445566666544 34567777899986
Q ss_pred ccc-----hh---hhHHHHHHHhCCeEEecccCcc
Q 025500 189 TRD-----IE---EEIIPLCRELGIGIVPYSPLGR 215 (252)
Q Consensus 189 ~~~-----~~---~~l~~~~~~~gi~v~a~spl~~ 215 (252)
... .. ..+.+..+++|+.+....+.+.
T Consensus 291 ~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~ 325 (349)
T PRK14463 291 EGCDFRSPTQEAIDRFHKYLLDKHVTVITRSSRGS 325 (349)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 421 11 4566678899999999988753
No 258
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=34.17 E-value=68 Score=25.40 Aligned_cols=69 Identities=13% Similarity=0.167 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHcC-CccEEEccCC--CHHHHHHHhhcCCceEEeeecCccccchhhhHHHHHHHhCCeEEecccC
Q 025500 140 IEETIGEMKKLVEEG-KIKYIGLSEA--SPGTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPL 213 (252)
Q Consensus 140 ~~~~~~~L~~l~~~G-~ir~iGvs~~--~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl 213 (252)
..|.+++|.++++.+ +|-.+|..|. +...+.+++. +.+.+..|+- ...-...+..+++.|+.++.-..+
T Consensus 63 ~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~---~~i~~~~~~~--~~e~~~~i~~~~~~G~~viVGg~~ 134 (176)
T PF06506_consen 63 GFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLG---VDIKIYPYDS--EEEIEAAIKQAKAEGVDVIVGGGV 134 (176)
T ss_dssp HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT----EEEEEEESS--HHHHHHHHHHHHHTT--EEEESHH
T ss_pred HhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhC---CceEEEEECC--HHHHHHHHHHHHHcCCcEEECCHH
Confidence 457888888888665 4666666663 3456666654 3445554432 222277888888999988875543
No 259
>PLN02880 tyrosine decarboxylase
Probab=34.12 E-value=1.9e+02 Score=27.13 Aligned_cols=92 Identities=7% Similarity=-0.051 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHcCCCcccEEEccCCC---CCCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhcCCceEEeeecC
Q 025500 110 VRSCCEASLKRLDVDYIDLYYQHRVD---TSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQMEWS 186 (252)
Q Consensus 110 i~~~~~~sL~~Lg~d~iDl~~lh~~~---~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~ 186 (252)
.+-++++++.-||+..=.+..+.... ...+.+..-+++++.+++|++-.+=|.+... ....
T Consensus 190 aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGT----------------T~~G 253 (490)
T PLN02880 190 THSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGT----------------TSST 253 (490)
T ss_pred chHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCC----------------CcCc
Confidence 45667777777776543344443321 1244555556666666667655443333221 0111
Q ss_pred ccccchhhhHHHHHHHhCCeEEecccCccccCC
Q 025500 187 LWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFG 219 (252)
Q Consensus 187 ~~~~~~~~~l~~~~~~~gi~v~a~spl~~G~L~ 219 (252)
.+++ -.++.+.|+++|+-+.+=..++++.+.
T Consensus 254 aiDp--l~eI~~i~~~~~iwlHVDaA~gg~~~~ 284 (490)
T PLN02880 254 AVDP--LLELGKIAKSNGMWFHVDAAYAGSACI 284 (490)
T ss_pred ccCc--HHHHHHHHHHcCCEEEEehhhHHHHHh
Confidence 1121 377888888888888888888777443
No 260
>PLN02775 Probable dihydrodipicolinate reductase
Probab=33.84 E-value=2.3e+02 Score=24.69 Aligned_cols=59 Identities=12% Similarity=0.089 Sum_probs=43.3
Q ss_pred HHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhc
Q 025500 113 CCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV 175 (252)
Q Consensus 113 ~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 175 (252)
.+++.|..+.-++.|++++..-. .+.+.+.++.+.+.|+---||.+.|+.++++++.+.
T Consensus 67 dl~~~l~~~~~~~~~~VvIDFT~----P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~ 125 (286)
T PLN02775 67 EREAVLSSVKAEYPNLIVVDYTL----PDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEE 125 (286)
T ss_pred cHHHHHHHhhccCCCEEEEECCC----hHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhc
Confidence 34455555555578888876543 345778888999999999999999999988777654
No 261
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=33.72 E-value=3.5e+02 Score=24.22 Aligned_cols=88 Identities=13% Similarity=0.027 Sum_probs=57.0
Q ss_pred EEEccCCCCC-----------CCHHHHHHHHHHHHHcC--C--ccEEEcc--CCCHHHHHHHhh---cCCceEEeeecCc
Q 025500 128 LYYQHRVDTS-----------VPIEETIGEMKKLVEEG--K--IKYIGLS--EASPGTIRRAHA---VHPITAVQMEWSL 187 (252)
Q Consensus 128 l~~lh~~~~~-----------~~~~~~~~~L~~l~~~G--~--ir~iGvs--~~~~~~l~~~~~---~~~~~~~q~~~~~ 187 (252)
.+.||.|+++ .+++++++++.+..+.. + +-++=+. |.+.+++.++.+ ..+..++-++||+
T Consensus 210 avSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp~Np 289 (345)
T PRK14466 210 AISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIRFHA 289 (345)
T ss_pred EEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEecCC
Confidence 5788988552 35788889988865442 2 2333332 556666555544 3567788889997
Q ss_pred ccc-----chh---hhHHHHHHHhCCeEEecccCcc
Q 025500 188 WTR-----DIE---EEIIPLCRELGIGIVPYSPLGR 215 (252)
Q Consensus 188 ~~~-----~~~---~~l~~~~~~~gi~v~a~spl~~ 215 (252)
... ... ..+.+..+++|+.+......+.
T Consensus 290 ~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G~ 325 (345)
T PRK14466 290 IPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRGE 325 (345)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 433 212 4566677899999998877754
No 262
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=33.33 E-value=4e+02 Score=24.72 Aligned_cols=123 Identities=14% Similarity=0.213 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEe----CcCCcCCCc-HHHHHHHHHhcCCC----CCEEEEeccCccCCCCcccccCCChH
Q 025500 38 VSEEDGISMIKHAFSKGITFFD----TADVYGQNA-NEVLLGKALKQLPR----EKIQVATKFGIAGIGVAGVIVKGAPD 108 (252)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~D----ta~~Yg~g~-se~~ig~~l~~~~R----~~~~i~tK~~~~~~~~~~~~~~~~~~ 108 (252)
.+.++..+.++...+.|++.|- +...||... ..+.+.+.++.+.+ .++.+.+- .+.
T Consensus 184 r~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~~gi~~ir~~~~---------------~p~ 248 (459)
T PRK14338 184 RPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEIPGLERLRFLTS---------------HPA 248 (459)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhcCCcceEEEEec---------------Chh
Confidence 4788999999999999987663 223465311 12234444443111 12322220 123
Q ss_pred HHHHHHHHHHHHcC--CCcccEEEccC-------CCCCCCHHHHHHHHHHHHHc--CCc-c---EEEccCCCHHHHHHHh
Q 025500 109 YVRSCCEASLKRLD--VDYIDLYYQHR-------VDTSVPIEETIGEMKKLVEE--GKI-K---YIGLSEASPGTIRRAH 173 (252)
Q Consensus 109 ~i~~~~~~sL~~Lg--~d~iDl~~lh~-------~~~~~~~~~~~~~L~~l~~~--G~i-r---~iGvs~~~~~~l~~~~ 173 (252)
.+.+.+-+.+.+++ ..++++=+=+. .......++..++++.+++. |.. . -+|+-+.+.+.+++.+
T Consensus 249 ~i~~ell~~l~~~~~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~i~~d~IvG~PgET~ed~~~ti 328 (459)
T PRK14338 249 WMTDRLIHAVARLPKCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAIPDVSLTTDIIVGHPGETEEQFQRTY 328 (459)
T ss_pred hcCHHHHHHHhcccccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEECCCCCHHHHHHHH
Confidence 33344444454443 33333222111 12223567788888888887 432 1 1588888888777665
Q ss_pred hc
Q 025500 174 AV 175 (252)
Q Consensus 174 ~~ 175 (252)
+.
T Consensus 329 ~~ 330 (459)
T PRK14338 329 DL 330 (459)
T ss_pred HH
Confidence 43
No 263
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.32 E-value=4.1e+02 Score=26.19 Aligned_cols=98 Identities=12% Similarity=0.126 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEeCcC--CcCCCcHHHHHHHHHhcCCCCCEEEEe--ccCccCCC--Ccc-----cccCC
Q 025500 37 PVSEEDGISMIKHAFSKGITFFDTAD--VYGQNANEVLLGKALKQLPREKIQVAT--KFGIAGIG--VAG-----VIVKG 105 (252)
Q Consensus 37 ~~~~~~~~~~l~~A~~~Gin~~Dta~--~Yg~g~se~~ig~~l~~~~R~~~~i~t--K~~~~~~~--~~~-----~~~~~ 105 (252)
+.|.++.++.++.+.+.|+.-|-.+. +|-+..+|..+++.+++.- .++.|++ ++++...- ... ..-..
T Consensus 135 ~lD~~~v~~~~~~l~~~gv~siAVs~~~S~~NP~HE~~v~eiire~~-~~i~V~~shev~p~~~~~eR~~TavlnA~L~p 213 (674)
T COG0145 135 PLDEEEVREAAAALKAAGVEAIAVSSLFSYRNPEHELRVAEIIREIG-PDIPVSLSHEVSPEIGEYERANTAVLNAYLSP 213 (674)
T ss_pred cCCHHHHHHHHHHHHhCCCcEEEEEEecccCCcHHHHHHHHHHHHhc-CCceEEechhcchhcCcccchhhheeeeeehH
Confidence 36899999999999999999777554 4555679999999999844 6777777 77763211 000 00001
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEccCCCC
Q 025500 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDT 136 (252)
Q Consensus 106 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~ 136 (252)
-.....++++..|+.-|.+ ..++++.+-..
T Consensus 214 i~~~yl~~v~~~l~~~g~~-~~l~~m~sdGg 243 (674)
T COG0145 214 ILRRYLEAVKDALKERGIK-ARLMVMQSDGG 243 (674)
T ss_pred HHHHHHHHHHHHHHhcCCC-ceeEEEecCCc
Confidence 1244556777788888775 67888777543
No 264
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=33.24 E-value=2.3e+02 Score=21.93 Aligned_cols=131 Identities=13% Similarity=0.193 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASL 118 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 118 (252)
.+|.....++.|++.|.+.|++-=.. .++..+|...= .-.+++.|
T Consensus 11 ~pent~~a~~~a~~~g~~~iE~Dv~~----------------tkDg~~vv~Hd-------------------i~tL~e~l 55 (189)
T cd08556 11 APENTLAAFRKALEAGADGVELDVQL----------------TKDGVLVVIHD-------------------IPTLEEVL 55 (189)
T ss_pred CCchHHHHHHHHHHcCCCEEEEEeeE----------------cCCCCEEEEcC-------------------CCCHHHHH
Confidence 45888999999999999988854221 22222222211 11334444
Q ss_pred HHcCCCcccE-EEccCCCCCCCHHHHHHHHHH-HHHcCCccEEEccCCCHHHHHHHhhcCC-c-----------------
Q 025500 119 KRLDVDYIDL-YYQHRVDTSVPIEETIGEMKK-LVEEGKIKYIGLSEASPGTIRRAHAVHP-I----------------- 178 (252)
Q Consensus 119 ~~Lg~d~iDl-~~lh~~~~~~~~~~~~~~L~~-l~~~G~ir~iGvs~~~~~~l~~~~~~~~-~----------------- 178 (252)
+.+.- ++ +.+.--+.. ...+.++.+.+ +++-|.-+.+=++.|+.+.+.++.+..| +
T Consensus 56 ~~~~~---~~~i~leiK~~~-~~~~~~~~l~~~i~~~~~~~~v~i~s~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~ 131 (189)
T cd08556 56 ELVKG---GVGLNIELKEPT-RYPGLEAKVAELLREYGLEERVVVSSFDHEALRALKELDPEVPTGLLVDKPPLDPLLAE 131 (189)
T ss_pred Hhccc---CcEEEEEECCCC-CchhHHHHHHHHHHHcCCcCCEEEEeCCHHHHHHHHHhCCCCcEEEEeecCcccchhhh
Confidence 44432 22 222221111 11234443333 4444667778888888877777655421 1
Q ss_pred -------eEEeeecCccccchhhhHHHHHHHhCCeEEeccc
Q 025500 179 -------TAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSP 212 (252)
Q Consensus 179 -------~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~sp 212 (252)
+.+..++.. ....+++.|+++|+.+.+|..
T Consensus 132 ~~~~~~~~~v~~~~~~----~~~~~i~~~~~~g~~v~~wtv 168 (189)
T cd08556 132 LARALGADAVNPHYKL----LTPELVRAAHAAGLKVYVWTV 168 (189)
T ss_pred HHHhcCCeEEccChhh----CCHHHHHHHHHcCCEEEEEcC
Confidence 111111111 236789999999999999864
No 265
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=33.23 E-value=1.7e+02 Score=23.64 Aligned_cols=67 Identities=15% Similarity=0.147 Sum_probs=40.6
Q ss_pred HHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEcc-CCCHHHHHHHhhcCCceEEeeecC
Q 025500 118 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPGTIRRAHAVHPITAVQMEWS 186 (252)
Q Consensus 118 L~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~~ 186 (252)
+.++|+|++-+..-.......+ .+....|.++... .+..+||- |.+.+.+.++.....++.+|+.-+
T Consensus 15 a~~~Gvd~ig~i~~~~s~R~v~-~~~a~~l~~~~~~-~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~ 82 (203)
T cd00405 15 AAEAGADAIGFIFAPKSPRYVS-PEQAREIVAALPP-FVKRVGVFVNEDLEEILEIAEELGLDVVQLHGD 82 (203)
T ss_pred HHHcCCCEEEEecCCCCCCCCC-HHHHHHHHHhCCC-CCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 3477876666654333222222 3444445544433 36778885 677787878877778899998543
No 266
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=33.10 E-value=2.6e+02 Score=22.57 Aligned_cols=130 Identities=18% Similarity=0.129 Sum_probs=79.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASL 118 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 118 (252)
..++..++++.|.+.|+.-+=+.+.+ -+...+.++ ...+.+.+=.+.+.. ..+.+....++++++
T Consensus 15 t~~~i~~~~~~a~~~~~~av~v~p~~-----v~~~~~~l~---~~~~~v~~~~~fp~g-------~~~~~~k~~eve~A~ 79 (203)
T cd00959 15 TEEDIRKLCDEAKEYGFAAVCVNPCF-----VPLAREALK---GSGVKVCTVIGFPLG-------ATTTEVKVAEAREAI 79 (203)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcHHH-----HHHHHHHcC---CCCcEEEEEEecCCC-------CCcHHHHHHHHHHHH
Confidence 67999999999999887766554433 122333333 234666555543221 134566677788877
Q ss_pred HHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHc--CCcc--EEEccCCCHHHHHHHhhc---CCceEEeee
Q 025500 119 KRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEE--GKIK--YIGLSEASPGTIRRAHAV---HPITAVQME 184 (252)
Q Consensus 119 ~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~--G~ir--~iGvs~~~~~~l~~~~~~---~~~~~~q~~ 184 (252)
+ +|.|-+|+++--..-...+.+..++.+.++++. |..- -+...-.+.+.+..+.+. ...+++...
T Consensus 80 ~-~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTs 151 (203)
T cd00959 80 A-DGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTS 151 (203)
T ss_pred H-cCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcC
Confidence 6 699999998875432234456677777777776 4322 134444555666655443 456777776
No 267
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=32.94 E-value=46 Score=28.21 Aligned_cols=97 Identities=18% Similarity=0.123 Sum_probs=48.3
Q ss_pred HHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHH-HHHHHHcCCccEEEccCC-------CHHHHHHHhhcCCceEEee
Q 025500 112 SCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGE-MKKLVEEGKIKYIGLSEA-------SPGTIRRAHAVHPITAVQM 183 (252)
Q Consensus 112 ~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~-L~~l~~~G~ir~iGvs~~-------~~~~l~~~~~~~~~~~~q~ 183 (252)
..++..|+-.| +|||++=+-|-......++.++. ++-+++.|.--+.|=.-+ ..+..-+..+...|+.+.+
T Consensus 25 ~~~~dlLe~ag-~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEi 103 (244)
T PF02679_consen 25 RYLEDLLESAG-DYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIEI 103 (244)
T ss_dssp HHHHHHHHHHG-GG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE
T ss_pred HHHHHHHHHhh-hhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEEe
Confidence 56677777777 69999999887554333344443 344444444444442211 1222222223355777766
Q ss_pred ecCccccchh--hhHHHHHHHhCCeEEe
Q 025500 184 EWSLWTRDIE--EEIIPLCRELGIGIVP 209 (252)
Q Consensus 184 ~~~~~~~~~~--~~l~~~~~~~gi~v~a 209 (252)
.-....-+.+ ..+++.+++.|..|++
T Consensus 104 SdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 104 SDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp --SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred cCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 5444443222 5678888888877664
No 268
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=32.79 E-value=99 Score=28.13 Aligned_cols=77 Identities=16% Similarity=0.195 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcC-CccEEEccCC---CHHHHHHHhhcC-CceEEee---ecCccccchhhhHHHHHHHhCCeEEeccc
Q 025500 141 EETIGEMKKLVEEG-KIKYIGLSEA---SPGTIRRAHAVH-PITAVQM---EWSLWTRDIEEEIIPLCRELGIGIVPYSP 212 (252)
Q Consensus 141 ~~~~~~L~~l~~~G-~ir~iGvs~~---~~~~l~~~~~~~-~~~~~q~---~~~~~~~~~~~~l~~~~~~~gi~v~a~sp 212 (252)
..+++.++.|..+| .|.++.|... +.++|+++++.. .+..++. +.....+ -.++-+.|+++|+.+..-..
T Consensus 102 ~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQp--I~ei~~i~k~~~i~fHvDAv 179 (386)
T COG1104 102 PAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQP--IAEIGEICKERGILFHVDAV 179 (386)
T ss_pred HHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeeccc--HHHHHHHHHHcCCeEEEehh
Confidence 35778888887778 5888888864 567777776532 1222221 2222222 37899999999988777666
Q ss_pred CccccCC
Q 025500 213 LGRGFFG 219 (252)
Q Consensus 213 l~~G~L~ 219 (252)
-+-|.+.
T Consensus 180 Qa~Gkip 186 (386)
T COG1104 180 QAVGKIP 186 (386)
T ss_pred hhcCcee
Confidence 6655443
No 269
>PTZ00124 adenosine deaminase; Provisional
Probab=32.78 E-value=3.7e+02 Score=24.18 Aligned_cols=159 Identities=11% Similarity=0.129 Sum_probs=74.9
Q ss_pred HHHHHHHHHHCCCCEEeC--cCCc---CCCc-HHHHHHHHHhc---CCCC-CEEEEeccCccCCCCcccccCCChHHHHH
Q 025500 43 GISMIKHAFSKGITFFDT--ADVY---GQNA-NEVLLGKALKQ---LPRE-KIQVATKFGIAGIGVAGVIVKGAPDYVRS 112 (252)
Q Consensus 43 ~~~~l~~A~~~Gin~~Dt--a~~Y---g~g~-se~~ig~~l~~---~~R~-~~~i~tK~~~~~~~~~~~~~~~~~~~i~~ 112 (252)
+.+.++.+.+-||.+++. ++.+ ..|. .++.+-..++. ..++ +..|..|+-... .+..+++...+
T Consensus 108 a~e~~~d~~~dgV~Y~Eir~~P~~~~~~~gl~~~~vv~av~~g~~~a~~~~~~gI~~~lI~~~------~R~~~~e~a~e 181 (362)
T PTZ00124 108 AKHAVFNKYKEGVVLMEFRYSPTFVAFKHNLDIDLIHQAIVKGIKEAVELLDHKIEVGLLCIG------DTGHDAAPIKE 181 (362)
T ss_pred HHHHHHHHHHcCCEEEEEEcCchhhhcCCCCCHHHHHHHHHHHHHHHHhccCCCceEeEEEEe------cCCCCHHHHHH
Confidence 345566677778888773 4433 1232 23333322222 1111 345555553322 12345666777
Q ss_pred HHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCC----CHHHHHHHhhcCCceEEeeecCcc
Q 025500 113 CCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA----SPGTIRRAHAVHPITAVQMEWSLW 188 (252)
Q Consensus 113 ~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~----~~~~l~~~~~~~~~~~~q~~~~~~ 188 (252)
.++...+.-. . ++=+.-...+.......++++.+++.|.-..+=.... +.+.+.+++....++=+---+++.
T Consensus 182 ~~~~a~~~~~--~--vvGiDLaG~E~~~~~f~~~f~~Ar~~Gl~~t~HaGE~~~~~~~~~v~~ai~~l~~~RIGHG~~~~ 257 (362)
T PTZ00124 182 SADFCLKHKA--D--FVGFDHAGHEVDLKPFKDIFDYVREAGVNLTVHAGEDVTLPNLNTLYSAIQVLKVKRIGHGIRVA 257 (362)
T ss_pred HHHHHHhccC--C--eEEEeccCCCCCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcchhHHHHHHHhCCCccccccccC
Confidence 7777776322 1 2222222222234456677888888877554433321 212222222111110000111121
Q ss_pred ccchhhhHHHHHHHhCCeEEecccCcc
Q 025500 189 TRDIEEEIIPLCRELGIGIVPYSPLGR 215 (252)
Q Consensus 189 ~~~~~~~l~~~~~~~gi~v~a~spl~~ 215 (252)
. .+.+++.+++++|.+.. .|..+
T Consensus 258 ~---d~~l~~~l~~~~I~lEv-CPtSN 280 (362)
T PTZ00124 258 E---SQELIDMVKEKDILLEV-CPISN 280 (362)
T ss_pred C---CHHHHHHHHHcCCeEEE-CCcch
Confidence 1 26799999999998764 34444
No 270
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=32.59 E-value=1e+02 Score=28.63 Aligned_cols=61 Identities=16% Similarity=0.238 Sum_probs=41.0
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHH
Q 025500 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRA 172 (252)
Q Consensus 104 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~ 172 (252)
..+.+...+.+.+.|+.||+++ |-+ .......+..-+.+++|+++|++ +.+. ++.+.+++.
T Consensus 47 ~Rs~~~~~~~I~e~L~wLGI~~-De~----y~QSer~~~y~~~~e~L~e~G~A-Y~C~--Ct~eel~~~ 107 (445)
T PRK12558 47 ERSKQEYADAIAEDLKWLGINW-DRT----FRQSDRFDRYDEAAEKLKAAGRL-YPCY--ETPEELELK 107 (445)
T ss_pred ccchHHHHHHHHHHHHHcCCCC-Ccc----ccHHHHHHHHHHHHHHHHHCCCE-EEec--CchHHHHHH
Confidence 3457889999999999999974 632 11222344556788999999995 4444 445565543
No 271
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=32.40 E-value=37 Score=35.05 Aligned_cols=74 Identities=15% Similarity=0.243 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHcCCccEE-E-ccCCC--HHHHHHHhhcCCceEEeeecCccccchh-hhHHHHHHHhCCeEEecccCcc
Q 025500 141 EETIGEMKKLVEEGKIKYI-G-LSEAS--PGTIRRAHAVHPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGR 215 (252)
Q Consensus 141 ~~~~~~L~~l~~~G~ir~i-G-vs~~~--~~~l~~~~~~~~~~~~q~~~~~~~~~~~-~~l~~~~~~~gi~v~a~spl~~ 215 (252)
..++++|..++++|+|..| | +++.. .+..+-++.+ .|-+++|.+.+.... ...+.+|++++++...+-+|..
T Consensus 600 ~kVl~al~r~kesG~i~Gf~GRLGDLg~Id~kYDvAIsT---ac~~LdyiVVdt~e~aq~cI~fl~~~nLgraTFi~LDk 676 (1293)
T KOG0996|consen 600 NKVLDALMRLKESGRIPGFYGRLGDLGAIDEKYDVAIST---ACARLDYIVVDTIETAQECINFLKKNNLGRATFIILDK 676 (1293)
T ss_pred hHHHHHHHHHHHcCCCCccccccccccccchHHHHHHHH---hccccceEEeccHHHHHHHHHHHHHcCCCceeEEehHh
Confidence 4689999999999988755 1 11111 0122223332 566777877776433 7899999999999999999975
Q ss_pred cc
Q 025500 216 GF 217 (252)
Q Consensus 216 G~ 217 (252)
=.
T Consensus 677 i~ 678 (1293)
T KOG0996|consen 677 IK 678 (1293)
T ss_pred hh
Confidence 43
No 272
>PRK10200 putative racemase; Provisional
Probab=32.34 E-value=2.1e+02 Score=23.77 Aligned_cols=64 Identities=19% Similarity=0.052 Sum_probs=45.1
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEccCCCCC------------CCHHHHHHHHHHHHHcCCccEEEccCCCHHHH
Q 025500 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS------------VPIEETIGEMKKLVEEGKIKYIGLSEASPGTI 169 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~------------~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l 169 (252)
.+.+..++-++..-.+.+.++++.+.+++++.. .+.....+.++.|.+.| +..|-+...+....
T Consensus 14 aT~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g-~~~iviaCNTah~~ 89 (230)
T PRK10200 14 STIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAG-AEGIVLCTNTMHKV 89 (230)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-CCEEEECCchHHHH
Confidence 356667777777777899999999999998431 12334556677777776 68888887666543
No 273
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=32.33 E-value=3.6e+02 Score=23.90 Aligned_cols=94 Identities=12% Similarity=0.017 Sum_probs=49.1
Q ss_pred EEEeccCccCCCCcccccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCC
Q 025500 86 QVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS 165 (252)
Q Consensus 86 ~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~ 165 (252)
+|..|+.......+ .....+.+... .+-+.|+..|+|++++-.-.+.... ..-.++..+++++.=.+--|++.+++
T Consensus 220 ~v~vRis~~~~~~~-~~~~~~~ee~~-~~~~~l~~~g~d~i~vs~g~~~~~~--~~~~~~~~~~ik~~~~ipvi~~G~i~ 295 (338)
T cd02933 220 RVGIRLSPFGTFND-MGDSDPEATFS-YLAKELNKRGLAYLHLVEPRVAGNP--EDQPPDFLDFLRKAFKGPLIAAGGYD 295 (338)
T ss_pred ceEEEECccccCCC-CCCCCCHHHHH-HHHHHHHHcCCcEEEEecCCCCCcc--cccchHHHHHHHHHcCCCEEEECCCC
Confidence 47778765432100 01123344333 3555666677766665221111111 11234445555555567777787777
Q ss_pred HHHHHHHhhcCCceEEee
Q 025500 166 PGTIRRAHAVHPITAVQM 183 (252)
Q Consensus 166 ~~~l~~~~~~~~~~~~q~ 183 (252)
++..+++++....+.+.+
T Consensus 296 ~~~a~~~l~~g~~D~V~~ 313 (338)
T cd02933 296 AESAEAALADGKADLVAF 313 (338)
T ss_pred HHHHHHHHHcCCCCEEEe
Confidence 777888877666666554
No 274
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=31.84 E-value=3.4e+02 Score=23.51 Aligned_cols=100 Identities=11% Similarity=0.155 Sum_probs=62.2
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEccC-CCCC-CC----HHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhcCCc
Q 025500 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHR-VDTS-VP----IEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPI 178 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~-~~~~-~~----~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 178 (252)
.+.+.+.+..++.+ .-|.|-||+=---. |... .+ ++.+...++.+++.-.+ -|.|-++.++.++++++.+.-
T Consensus 35 ~~~~~a~~~a~~~~-~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~-~ISIDT~~~~va~~AL~~Gad 112 (282)
T PRK11613 35 NSLIDAVKHANLMI-NAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEV-WISVDTSKPEVIRESAKAGAH 112 (282)
T ss_pred CCHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEECCCHHHHHHHHHcCCC
Confidence 35566655555544 56788888864433 4322 22 22355566777654233 389999999999999987533
Q ss_pred eEEeeecCccccchhhhHHHHHHHhCCeEEecc
Q 025500 179 TAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYS 211 (252)
Q Consensus 179 ~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~s 211 (252)
-+|-+ +-+. .+++++.|+++|..++.+.
T Consensus 113 iINDI--~g~~---d~~~~~~~a~~~~~vVlmh 140 (282)
T PRK11613 113 IINDI--RSLS---EPGALEAAAETGLPVCLMH 140 (282)
T ss_pred EEEEC--CCCC---CHHHHHHHHHcCCCEEEEc
Confidence 23333 2222 2467888999999998874
No 275
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=31.64 E-value=63 Score=26.18 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=41.1
Q ss_pred HHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccC-CCHHHHHHHhhcCCceEEeeec
Q 025500 116 ASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE-ASPGTIRRAHAVHPITAVQMEW 185 (252)
Q Consensus 116 ~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~~ 185 (252)
+.+..+|.||+=+.+. |...-.+ ..+.+.++.+.-..+.+||.. .+.+.+.++.....++++|+.-
T Consensus 13 ~~~~~~g~d~~Gfi~~--~~S~R~v--~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG 79 (197)
T PF00697_consen 13 RLAAELGADYLGFIFY--PKSPRYV--SPDQARELVSAVPPKIVGVFVNQSPEEILEIVEELGLDVVQLHG 79 (197)
T ss_dssp HHHHHHTSSEEEEE----TTCTTB----HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCTESEEEE-S
T ss_pred HHHHHcCCCEEeeecC--CCCCCcc--CHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCCCEEEECC
Confidence 4567889999888754 3322222 234455555555555889875 5667788888889999999844
No 276
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=31.63 E-value=2.5e+02 Score=21.86 Aligned_cols=98 Identities=17% Similarity=0.092 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhcCCCC-CEEEEeccCccCCCCcccccCCChHHHHHHHHHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPRE-KIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEAS 117 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~~~R~-~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 117 (252)
+.+...++++.+.+.|++-+-+.. +.+..+.+. .++ ++-|..+++..... ...+...+.++..
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--------~~i~~~~~~-~~~~~~~v~~~v~~~~~~-------~~~~~~~~~a~~a 74 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--------GYVRLAADA-LAGSDVPVIVVVGFPTGL-------TTTEVKVAEVEEA 74 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--------HHHHHHHHH-hCCCCCeEEEEecCCCCC-------CcHHHHHHHHHHH
Confidence 688999999999999999877653 333333332 233 56677777653310 1144455555544
Q ss_pred HHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHc
Q 025500 118 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEE 153 (252)
Q Consensus 118 L~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~ 153 (252)
.++|.|.+.+..-+......+.+++.+.++++.+.
T Consensus 75 -~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~ 109 (201)
T cd00945 75 -IDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEA 109 (201)
T ss_pred -HHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHH
Confidence 44576555553222211111245566666666665
No 277
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=31.50 E-value=3.6e+02 Score=23.61 Aligned_cols=35 Identities=6% Similarity=0.162 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHHHHcCCccEEEc---cCCCHHHHHHHh
Q 025500 139 PIEETIGEMKKLVEEGKIKYIGL---SEASPGTIRRAH 173 (252)
Q Consensus 139 ~~~~~~~~L~~l~~~G~ir~iGv---s~~~~~~l~~~~ 173 (252)
..+.++++++.+++.|.--.+-+ .+.+.+.+.++.
T Consensus 147 ~f~~~l~~I~~l~~~G~~v~v~~tv~~~~n~~ei~~~~ 184 (318)
T TIGR03470 147 VFDRAVEAIREAKARGFRVTTNTTLFNDTDPEEVAEFF 184 (318)
T ss_pred cHHHHHHHHHHHHHCCCcEEEEEEEeCCCCHHHHHHHH
Confidence 35678899999999886322321 335555555544
No 278
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=31.24 E-value=4.2e+02 Score=24.31 Aligned_cols=120 Identities=8% Similarity=-0.017 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCC-EEe-CcCC-cCCCcHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHH
Q 025500 35 SSPVSEEDGISMIKHAFSKGIT-FFD-TADV-YGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVR 111 (252)
Q Consensus 35 ~~~~~~~~~~~~l~~A~~~Gin-~~D-ta~~-Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~ 111 (252)
+.+.-.+...++++.+-+.|++ .++ |+.. +. .++.+-+.++ ..=+.+.|+-|....... ........++.+.
T Consensus 83 Gepl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~---~~e~~~~L~~-~gld~v~iSvka~dpe~h-~kl~G~~~a~~IL 157 (404)
T TIGR03278 83 GDVSCYPELEELTKGLSDLGLPIHLGYTSGKGFD---DPEIAEFLID-NGVREVSFTVFATDPELR-REWMKDPTPEASL 157 (404)
T ss_pred cccccCHHHHHHHHHHHhCCCCEEEeCCCCcccC---CHHHHHHHHH-cCCCEEEEecccCCHHHH-HHHhCCCCHHHHH
Q ss_pred HHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCC
Q 025500 112 SCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA 164 (252)
Q Consensus 112 ~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~ 164 (252)
+.++...+. ..=++-++++...++...+.++++.|.++ .+..+|+..|
T Consensus 158 e~L~~L~e~-~~v~~~ivlIPGiND~eel~~ti~~L~~l----g~~~V~L~~y 205 (404)
T TIGR03278 158 QCLRRFCES-CEVHAASVIIPGVNDGDVLWKTCADLESW----GAKALILMRF 205 (404)
T ss_pred HHHHHHHhc-CCEEEEEEEeCCccCcHHHHHHHHHHHHC----CCCEEEEEec
No 279
>PRK09358 adenosine deaminase; Provisional
Probab=31.20 E-value=3.6e+02 Score=23.58 Aligned_cols=105 Identities=12% Similarity=0.050 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCC-CHHHHHHHhhcCCceEEeeec
Q 025500 107 PDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-SPGTIRRAHAVHPITAVQMEW 185 (252)
Q Consensus 107 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~~~ 185 (252)
++...+.+++.++...-+.+--+-++.+....+.+...+.++..++.|.--.+=++.. +.+.+..++....++. +..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~vvg~~l~g~e~~~~~~~~~~~~~~A~~~g~~~~~H~~E~~~~~~~~~al~~lg~~r--i~H 225 (340)
T PRK09358 148 EEAAARELEALAARYRDDGVVGFDLAGDELGFPPSKFARAFDRARDAGLRLTAHAGEAGGPESIWEALDELGAER--IGH 225 (340)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEeCCCcCCCCCHHHHHHHHHHHHHCCCCeEEcCCCCCchhHHHHHHHHcCCcc--cch
Confidence 4455556666665422222211223333333344556677788888887666655543 2334444444211211 111
Q ss_pred CccccchhhhHHHHHHHhCCeEEecccCcc
Q 025500 186 SLWTRDIEEEIIPLCRELGIGIVPYSPLGR 215 (252)
Q Consensus 186 ~~~~~~~~~~l~~~~~~~gi~v~a~spl~~ 215 (252)
...-. ..+++++..+++|+.|. ..|..+
T Consensus 226 g~~l~-~~~~~~~~l~~~gi~v~-~cP~Sn 253 (340)
T PRK09358 226 GVRAI-EDPALMARLADRRIPLE-VCPTSN 253 (340)
T ss_pred hhhhc-cCHHHHHHHHHcCCeEE-ECCCcc
Confidence 11111 12568999999999875 445544
No 280
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=31.18 E-value=5.4e+02 Score=25.63 Aligned_cols=157 Identities=13% Similarity=0.109 Sum_probs=84.9
Q ss_pred CCHHHHHHHH-------HHHHHCCCCEEeCcC-------------------CcCCCcHH---H---HHHHHHhcCCCCCE
Q 025500 38 VSEEDGISMI-------KHAFSKGITFFDTAD-------------------VYGQNANE---V---LLGKALKQLPREKI 85 (252)
Q Consensus 38 ~~~~~~~~~l-------~~A~~~Gin~~Dta~-------------------~Yg~g~se---~---~ig~~l~~~~R~~~ 85 (252)
++.++..+++ +.|.++|+..||.-. .|| |.-| + .|=+++++.-..++
T Consensus 541 mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yG-GslenR~r~~~eiv~~ir~~~~~~~ 619 (765)
T PRK08255 541 MTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYG-GSLENRLRYPLEVFRAVRAVWPAEK 619 (765)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCC-CCHHHHhHHHHHHHHHHHHhcCCCC
Confidence 5555554444 467778999888522 233 2112 1 12233333334578
Q ss_pred EEEeccCccCCCCcccccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCC----CCHHH--HHHHHHHHHHcCCccEE
Q 025500 86 QVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS----VPIEE--TIGEMKKLVEEGKIKYI 159 (252)
Q Consensus 86 ~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~----~~~~~--~~~~L~~l~~~G~ir~i 159 (252)
.|+.|+........ ..+.+... .+-+.|+..|+|++|+ |..... ..... .....+++|+.=.+--|
T Consensus 620 ~v~~ri~~~~~~~~----g~~~~~~~-~~~~~l~~~g~d~i~v---s~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~ 691 (765)
T PRK08255 620 PMSVRISAHDWVEG----GNTPDDAV-EIARAFKAAGADLIDV---SSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATI 691 (765)
T ss_pred eeEEEEccccccCC----CCCHHHHH-HHHHHHHhcCCcEEEe---CCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEE
Confidence 88999876432111 23444443 3445577888766665 422110 00000 11223455555567778
Q ss_pred EccCC-CHHHHHHHhhcCCceEEee-ecCccccchhhhHHHHHHHhCCe
Q 025500 160 GLSEA-SPGTIRRAHAVHPITAVQM-EWSLWTRDIEEEIIPLCRELGIG 206 (252)
Q Consensus 160 Gvs~~-~~~~l~~~~~~~~~~~~q~-~~~~~~~~~~~~l~~~~~~~gi~ 206 (252)
++.+. +++..+++++....+.+.+ +--+.++ .=+...+++.++.
T Consensus 692 ~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP---~~~~~~~~~~~~~ 737 (765)
T PRK08255 692 AVGAISEADHVNSIIAAGRADLCALARPHLADP---AWTLHEAAEIGYR 737 (765)
T ss_pred EeCCCCCHHHHHHHHHcCCcceeeEcHHHHhCc---cHHHHHHHHcCCC
Confidence 88775 7788999988877777766 2223333 2356667788876
No 281
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.07 E-value=3.9e+02 Score=23.99 Aligned_cols=86 Identities=14% Similarity=0.160 Sum_probs=55.4
Q ss_pred EccCCCCC-----------CCHHHHHHHHHHHH-HcCC---ccEEEccC--CCHHHHHHHhh---cCCceEEeeecCccc
Q 025500 130 YQHRVDTS-----------VPIEETIGEMKKLV-EEGK---IKYIGLSE--ASPGTIRRAHA---VHPITAVQMEWSLWT 189 (252)
Q Consensus 130 ~lh~~~~~-----------~~~~~~~~~L~~l~-~~G~---ir~iGvs~--~~~~~l~~~~~---~~~~~~~q~~~~~~~ 189 (252)
-||.++++ .+++++++++.++. +.|+ |+++=+.+ .+.++++++.+ ..+..++-++||++.
T Consensus 225 SLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~~ 304 (356)
T PRK14462 225 SLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPHE 304 (356)
T ss_pred ECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCCC
Confidence 48998663 23567888887554 4454 66665554 45566555543 345678888999866
Q ss_pred cc------hh--hhHHHHHHHhCCeEEecccCcc
Q 025500 190 RD------IE--EEIIPLCRELGIGIVPYSPLGR 215 (252)
Q Consensus 190 ~~------~~--~~l~~~~~~~gi~v~a~spl~~ 215 (252)
.. .+ ..+.+..+++|+.+......+.
T Consensus 305 ~~~~~~ps~e~i~~f~~~l~~~gi~vtvR~~~G~ 338 (356)
T PRK14462 305 GSKFERPSLEDMIKFQDYLNSKGLLCTIRESKGL 338 (356)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 31 11 3455567788999998877754
No 282
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=30.76 E-value=3.3e+02 Score=22.94 Aligned_cols=159 Identities=16% Similarity=0.191 Sum_probs=94.2
Q ss_pred HHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhcCC--CC--CEEEEeccCccCCCCcccccCCChHHHHHHHHHHH
Q 025500 43 GISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLP--RE--KIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASL 118 (252)
Q Consensus 43 ~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~~~--R~--~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 118 (252)
....+..|-+.|.- + .. .+..+.++++... +. .+.++..+.+.. .....+...+.+.+
T Consensus 51 p~~Fi~~aE~~gli--~---~l----~~~v~~~a~~~~~~~~~~~~~~l~iNis~~~---------l~~~~~~~~l~~~l 112 (256)
T COG2200 51 PGEFIPLAEETGLI--V---EL----GRWVLEEACRQLRTWPRAGPLRLAVNLSPVQ---------LRSPGLVDLLLRLL 112 (256)
T ss_pred HHHHHHHHHHcCCH--H---HH----HHHHHHHHHHHHHhhhhcCCceEEEEcCHHH---------hCCchHHHHHHHHH
Confidence 35566666666751 1 11 3455555555411 11 367777665422 22345666788888
Q ss_pred HHcCCCcccEEEccCCCCC--CCHHHHHHHHHHHHHcCCccEEEccCCCH--HHHHHHhhcCCceEEeeecCcccc----
Q 025500 119 KRLDVDYIDLYYQHRVDTS--VPIEETIGEMKKLVEEGKIKYIGLSEASP--GTIRRAHAVHPITAVQMEWSLWTR---- 190 (252)
Q Consensus 119 ~~Lg~d~iDl~~lh~~~~~--~~~~~~~~~L~~l~~~G~ir~iGvs~~~~--~~l~~~~~~~~~~~~q~~~~~~~~---- 190 (252)
++.+++.- -+.+.-.... ...+.+...+.+|++.|- .|.+.+|+. ..+..+.. .+++++-++-+....
T Consensus 113 ~~~~~~~~-~l~lEitE~~~~~~~~~~~~~l~~L~~~G~--~ialDDFGtG~ssl~~L~~-l~~d~iKID~~fi~~i~~~ 188 (256)
T COG2200 113 ARLGLPPH-RLVLEITESALIDDLDTALALLRQLRELGV--RIALDDFGTGYSSLSYLKR-LPPDILKIDRSFVRDLETD 188 (256)
T ss_pred HHhCCCcc-eEEEEEeCchhhcCHHHHHHHHHHHHHCCC--eEEEECCCCCHHHHHHHhh-CCCCeEEECHHHHhhcccC
Confidence 88887542 3333222221 234467788999999993 477777664 33444444 677777665444331
Q ss_pred ----chhhhHHHHHHHhCCeEEecc---------------cCccccCCCCCC
Q 025500 191 ----DIEEEIIPLCRELGIGIVPYS---------------PLGRGFFGGKAV 223 (252)
Q Consensus 191 ----~~~~~l~~~~~~~gi~v~a~s---------------pl~~G~L~~~~~ 223 (252)
..-..++..|++.|+.|++-. ...+|+|.+++.
T Consensus 189 ~~~~~iv~~iv~la~~l~~~vvaEGVEt~~ql~~L~~~G~~~~QGylf~~P~ 240 (256)
T COG2200 189 ARDQAIVRAIVALAHKLGLTVVAEGVETEEQLDLLRELGCDYLQGYLFSRPL 240 (256)
T ss_pred cchHHHHHHHHHHHHHCCCEEEEeecCCHHHHHHHHHcCCCeEeeccccCCC
Confidence 122789999999999999754 356777776643
No 283
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=30.71 E-value=3.2e+02 Score=22.84 Aligned_cols=87 Identities=10% Similarity=0.049 Sum_probs=49.0
Q ss_pred HHHHHcCCCcccEEEccCCCCC---CCHHHHHHHHHHHHHcCCccEEEccC-CCHHHHHHHhhcCCceEEeeecCccccc
Q 025500 116 ASLKRLDVDYIDLYYQHRVDTS---VPIEETIGEMKKLVEEGKIKYIGLSE-ASPGTIRRAHAVHPITAVQMEWSLWTRD 191 (252)
Q Consensus 116 ~sL~~Lg~d~iDl~~lh~~~~~---~~~~~~~~~L~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~~~~~~~~~ 191 (252)
+.+..+|. |-+.+|..+.. ... -|+.+.++++.-.+.-|.-.. .+.+.+.++.+....+.+.+-=-++...
T Consensus 160 ~~~~~~g~---~~ii~~~i~~~g~~~g~--d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~ 234 (253)
T PRK02083 160 KEVEELGA---GEILLTSMDRDGTKNGY--DLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGE 234 (253)
T ss_pred HHHHHcCC---CEEEEcCCcCCCCCCCc--CHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCC
Confidence 33456665 55666664431 111 266677777665666666554 4567888877653343333321122211
Q ss_pred -hhhhHHHHHHHhCCeE
Q 025500 192 -IEEEIIPLCRELGIGI 207 (252)
Q Consensus 192 -~~~~l~~~~~~~gi~v 207 (252)
...++.+.|++.||.+
T Consensus 235 ~~~~~~~~~~~~~~~~~ 251 (253)
T PRK02083 235 ITIGELKAYLAEQGIPV 251 (253)
T ss_pred CCHHHHHHHHHHCCCcc
Confidence 1278899999998865
No 284
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=30.61 E-value=3e+02 Score=25.01 Aligned_cols=56 Identities=9% Similarity=0.058 Sum_probs=38.2
Q ss_pred CCCHHHHHHHhhc-CCceEEeeecCccccchh-hhHHHHHHHhCCeEEecccCccccC
Q 025500 163 EASPGTIRRAHAV-HPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFF 218 (252)
Q Consensus 163 ~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~L 218 (252)
..+.+.+++++.. ....++..+.|+.-.-.. .++.+.|+++|+.++.=..++.|.+
T Consensus 142 ~~d~~~l~~ai~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~ 199 (403)
T PRK07810 142 GEDLSQWEEALSVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLL 199 (403)
T ss_pred CCCHHHHHHhcCcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCcccc
Confidence 3467777777643 344555556776554322 7899999999999997777766654
No 285
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=30.26 E-value=3.2e+02 Score=27.84 Aligned_cols=69 Identities=14% Similarity=0.058 Sum_probs=54.6
Q ss_pred CChHHHHHHHHHHHHHcCC--------------------------CcccEEEccCCCCCCC---HHHHHHHHHHHHHcCC
Q 025500 105 GAPDYVRSCCEASLKRLDV--------------------------DYIDLYYQHRVDTSVP---IEETIGEMKKLVEEGK 155 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~--------------------------d~iDl~~lh~~~~~~~---~~~~~~~L~~l~~~G~ 155 (252)
.....+.+.++..|+.+|. ....++++..|....+ ...+|+.+.++++.|+
T Consensus 670 ~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~ 749 (885)
T KOG0059|consen 670 LPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGK 749 (885)
T ss_pred CChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 4456777888888887774 4567888888866555 3468999999999999
Q ss_pred ccEEEccCCCHHHHHHHhhc
Q 025500 156 IKYIGLSEASPGTIRRAHAV 175 (252)
Q Consensus 156 ir~iGvs~~~~~~l~~~~~~ 175 (252)
+|=+.+|+.+..+.+...
T Consensus 750 --aiiLTSHsMeE~EaLCtR 767 (885)
T KOG0059|consen 750 --AIILTSHSMEEAEALCTR 767 (885)
T ss_pred --EEEEEcCCHHHHHHHhhh
Confidence 999999999998887654
No 286
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=30.02 E-value=3e+02 Score=22.25 Aligned_cols=71 Identities=23% Similarity=0.305 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCC-Cc---HHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQ-NA---NEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~-g~---se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 114 (252)
+.++...+.+.|.++|..|+=|+..|.. |. .-+.+.+.++ .+-.+.++-- . .+.+...+-+
T Consensus 129 ~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~--~~v~ik~aGG-----------i--kt~~~~l~~~ 193 (203)
T cd00959 129 TDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVG--GRVGVKAAGG-----------I--RTLEDALAMI 193 (203)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC--CCceEEEeCC-----------C--CCHHHHHHHH
Confidence 5688999999999999999999977763 22 2244444444 2222333211 1 1577777777
Q ss_pred HHHHHHcCCC
Q 025500 115 EASLKRLDVD 124 (252)
Q Consensus 115 ~~sL~~Lg~d 124 (252)
+....|+|++
T Consensus 194 ~~g~~riG~s 203 (203)
T cd00959 194 EAGATRIGTS 203 (203)
T ss_pred HhChhhccCC
Confidence 7777888763
No 287
>PRK00915 2-isopropylmalate synthase; Validated
Probab=29.87 E-value=4.8e+02 Score=24.64 Aligned_cols=180 Identities=11% Similarity=0.063 Sum_probs=89.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcC-CcCCCcHHHHHHHHHhcCCCCCEEEEeccCccCCC-------C-----------c
Q 025500 39 SEEDGISMIKHAFSKGITFFDTAD-VYGQNANEVLLGKALKQLPREKIQVATKFGIAGIG-------V-----------A 99 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~-~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~-------~-----------~ 99 (252)
+.++..++.+.-.+.||..|+... ..++. ..+.+.+..+..+..++..-+........ . .
T Consensus 24 s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~~-d~~~v~~i~~~~~~~~i~a~~r~~~~did~a~~a~~~~~~~~v~i~~~~ 102 (513)
T PRK00915 24 TVEEKLQIAKQLERLGVDVIEAGFPASSPG-DFEAVKRIARTVKNSTVCGLARAVKKDIDAAAEALKPAEAPRIHTFIAT 102 (513)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCChH-HHHHHHHHHhhCCCCEEEEEccCCHHHHHHHHHHhhcCCCCEEEEEECC
Confidence 778999999999999999999754 22221 22333222222333333332211110000 0 0
Q ss_pred c-----cccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCC-CCCHHHHHHHHHHHHHcCCccEEEccC----CCHHHH
Q 025500 100 G-----VIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT-SVPIEETIGEMKKLVEEGKIKYIGLSE----ASPGTI 169 (252)
Q Consensus 100 ~-----~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~-~~~~~~~~~~L~~l~~~G~ir~iGvs~----~~~~~l 169 (252)
+ .....+++.+.+.+.++.+...---++ +.+..++. ..+.+.+++.++.+.+.| +..|.+++ ..|.++
T Consensus 103 Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~-v~f~~ed~~r~d~~~l~~~~~~~~~~G-a~~i~l~DTvG~~~P~~~ 180 (513)
T PRK00915 103 SPIHMEYKLKMSREEVLEMAVEAVKYARSYTDD-VEFSAEDATRTDLDFLCRVVEAAIDAG-ATTINIPDTVGYTTPEEF 180 (513)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe-EEEEeCCCCCCCHHHHHHHHHHHHHcC-CCEEEEccCCCCCCHHHH
Confidence 0 011234555554444444433211112 23333333 234566777778888877 67787776 456665
Q ss_pred HHHhhc----CC-ceEEeeecCccccc-hhhhHHHHHHHhCCeEEecccCccccCCCC
Q 025500 170 RRAHAV----HP-ITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRGFFGGK 221 (252)
Q Consensus 170 ~~~~~~----~~-~~~~q~~~~~~~~~-~~~~l~~~~~~~gi~v~a~spl~~G~L~~~ 221 (252)
.++.+. .+ ..-+.+.+|.-+.. ..-.-.-.|-+.|+..+--+-.+.|--+|.
T Consensus 181 ~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANslaAv~aGa~~Vd~Tv~GlGERaGN 238 (513)
T PRK00915 181 GELIKTLRERVPNIDKAIISVHCHNDLGLAVANSLAAVEAGARQVECTINGIGERAGN 238 (513)
T ss_pred HHHHHHHHHhCCCcccceEEEEecCCCCHHHHHHHHHHHhCCCEEEEEeecccccccC
Confidence 554432 11 11134455443331 112222334478998888888887754444
No 288
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=29.76 E-value=4.2e+02 Score=23.88 Aligned_cols=179 Identities=12% Similarity=0.028 Sum_probs=82.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHH-HHHHHHHhcCCCCCEEEEeccCccCC-----CCcc---c--------
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANE-VLLGKALKQLPREKIQVATKFGIAGI-----GVAG---V-------- 101 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se-~~ig~~l~~~~R~~~~i~tK~~~~~~-----~~~~---~-------- 101 (252)
+.++..++++.-.++||..|+.....- +..| +.+....+...+..+..-........ ...+ .
T Consensus 24 s~e~k~~ia~~L~~~GV~~IE~G~p~~-~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~h 102 (378)
T PRK11858 24 TNEEKLAIARMLDEIGVDQIEAGFPAV-SEDEKEAIKAIAKLGLNASILALNRAVKSDIDASIDCGVDAVHIFIATSDIH 102 (378)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCCCc-ChHHHHHHHHHHhcCCCeEEEEEcccCHHHHHHHHhCCcCEEEEEEcCCHHH
Confidence 678999999999999999999753221 2344 34433333222222222221100000 0000 0
Q ss_pred ---ccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCC-CCCHHHHHHHHHHHHHcCCccEEEccC----CCHHHHHHHh
Q 025500 102 ---IVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT-SVPIEETIGEMKKLVEEGKIKYIGLSE----ASPGTIRRAH 173 (252)
Q Consensus 102 ---~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~-~~~~~~~~~~L~~l~~~G~ir~iGvs~----~~~~~l~~~~ 173 (252)
....+++.+.+.+.++.+...-.-+. +.+..++. ..+.+.+.+.++.+.+.| +..|.+++ .++.++.++.
T Consensus 103 ~~~~~~~s~~~~l~~~~~~v~~a~~~G~~-v~~~~ed~~r~~~~~l~~~~~~~~~~G-a~~I~l~DT~G~~~P~~v~~lv 180 (378)
T PRK11858 103 IKHKLKKTREEVLERMVEAVEYAKDHGLY-VSFSAEDASRTDLDFLIEFAKAAEEAG-ADRVRFCDTVGILDPFTMYELV 180 (378)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHCCCe-EEEEeccCCCCCHHHHHHHHHHHHhCC-CCEEEEeccCCCCCHHHHHHHH
Confidence 01123344444444433332211111 22222222 234556666677777766 45676665 3455555544
Q ss_pred hcC--CceEEeeecCccccc-hhhhHHHHHHHhCCeEEecccCccccCCCC
Q 025500 174 AVH--PITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRGFFGGK 221 (252)
Q Consensus 174 ~~~--~~~~~q~~~~~~~~~-~~~~l~~~~~~~gi~v~a~spl~~G~L~~~ 221 (252)
... .+ -+.+.++.-+.. ....-.-.|-+.|+..+--+-.+-|--+|.
T Consensus 181 ~~l~~~~-~~~l~~H~Hnd~GlA~AN~laAv~aGa~~vd~tv~GlGeraGN 230 (378)
T PRK11858 181 KELVEAV-DIPIEVHCHNDFGMATANALAGIEAGAKQVHTTVNGLGERAGN 230 (378)
T ss_pred HHHHHhc-CCeEEEEecCCcCHHHHHHHHHHHcCCCEEEEeeccccccccC
Confidence 321 11 123444443321 011222234468888887777777754443
No 289
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=29.70 E-value=3e+02 Score=22.26 Aligned_cols=22 Identities=14% Similarity=0.354 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEeC
Q 025500 39 SEEDGISMIKHAFSKGITFFDT 60 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dt 60 (252)
.+|.....++.|++.|...|++
T Consensus 11 ~pENT~~af~~A~~~gad~iE~ 32 (229)
T cd08562 11 APENTLAAFRAAAELGVRWVEF 32 (229)
T ss_pred CCchHHHHHHHHHHcCCCEEEE
Confidence 4688899999999999998875
No 290
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=29.58 E-value=5.3e+02 Score=25.00 Aligned_cols=24 Identities=8% Similarity=0.077 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEeC
Q 025500 37 PVSEEDGISMIKHAFSKGITFFDT 60 (252)
Q Consensus 37 ~~~~~~~~~~l~~A~~~Gin~~Dt 60 (252)
++..++..++....-+.|+..++.
T Consensus 23 r~~~~d~l~ia~~ld~~G~~siE~ 46 (593)
T PRK14040 23 RLRLDDMLPIAAKLDKVGYWSLES 46 (593)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEe
Confidence 447788888888888889998887
No 291
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=29.39 E-value=3.6e+02 Score=22.96 Aligned_cols=29 Identities=17% Similarity=0.143 Sum_probs=21.6
Q ss_pred HHHHHHcCCccEEEccCCCHHHHHHHhhc
Q 025500 147 MKKLVEEGKIKYIGLSEASPGTIRRAHAV 175 (252)
Q Consensus 147 L~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 175 (252)
++.+++.|.-+.+=+++|+++.+..+...
T Consensus 156 ~~~i~~~~~~~~vi~sSF~~~~l~~~~~~ 184 (286)
T cd08606 156 LEKVFDYGAGRNIIFSSFTPDICILLSLK 184 (286)
T ss_pred HHHHHhcCCCCceEEEcCCHHHHHHHHhh
Confidence 44455567778899999999988777554
No 292
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=29.37 E-value=2.8e+02 Score=22.67 Aligned_cols=117 Identities=17% Similarity=0.161 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHCCCC-----EEeCcCCcCCCcHHHHHHHHHhc----CCCCCEEEEeccCccCCCCcccccCCChHHHH
Q 025500 41 EDGISMIKHAFSKGIT-----FFDTADVYGQNANEVLLGKALKQ----LPREKIQVATKFGIAGIGVAGVIVKGAPDYVR 111 (252)
Q Consensus 41 ~~~~~~l~~A~~~Gin-----~~Dta~~Yg~g~se~~ig~~l~~----~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~ 111 (252)
..+.-+.-+|+-.|.+ |+=.+..|| |...-+.+.. .... -+++.+.. ....+.....
T Consensus 43 TAAlG~alRa~GhG~rv~vvQFiKg~~~~G----E~~~~~~~~~~v~~~~~~-~g~tw~~~---------~~~~d~~aa~ 108 (198)
T COG2109 43 TAALGLALRALGHGLRVGVVQFIKGGWKYG----EEAALEKFGLGVEFHGMG-EGFTWETQ---------DREADIAAAK 108 (198)
T ss_pred HHHHHHHHHHhcCCCEEEEEEEeecCcchh----HHHHHHhhccceeEEecC-CceeCCCc---------CcHHHHHHHH
Confidence 4567777788888887 566676776 3333333210 1111 12222211 1112457788
Q ss_pred HHHHHHHHHcCCCcccEEEccCCCC-----CCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHH
Q 025500 112 SCCEASLKRLDVDYIDLYYQHRVDT-----SVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRA 172 (252)
Q Consensus 112 ~~~~~sL~~Lg~d~iDl~~lh~~~~-----~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~ 172 (252)
+.++.+.+.+.-+..|++++.-... ..+.+++++.|..--..=.|---| .+...+.++.+
T Consensus 109 ~~w~~a~~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTG-r~ap~~lie~A 173 (198)
T COG2109 109 AGWEHAKEALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITG-RGAPPELIELA 173 (198)
T ss_pred HHHHHHHHHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEEC-CCCCHHHHHHH
Confidence 8999999999999999999977643 245667776665322333344445 44555555544
No 293
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=29.32 E-value=1.7e+02 Score=25.68 Aligned_cols=52 Identities=21% Similarity=0.293 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCH-HHHHHHHHHHHHcCCccEE
Q 025500 107 PDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPI-EETIGEMKKLVEEGKIKYI 159 (252)
Q Consensus 107 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~-~~~~~~L~~l~~~G~ir~i 159 (252)
.+++.+..+...++||.....+.+--......-+ ..+-+.|++|.++| ++.|
T Consensus 206 ~~~~~~t~~~i~~~l~~~~~~~~fQS~~g~~~WL~P~~~~~l~~l~~~G-~~~V 258 (316)
T PF00762_consen 206 PAQCEETARLIAERLGLPEWRLAFQSRFGPGEWLGPSTEDVLEELAKEG-VKRV 258 (316)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEEEES-SSSS-BSSSBHHHHHHHHHHCT--SEE
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCccccHHHHHHHHHhcC-CCeE
Confidence 5678888999999999877666655433332111 24678889999999 4444
No 294
>PLN02438 inositol-3-phosphate synthase
Probab=29.14 E-value=3.4e+02 Score=25.70 Aligned_cols=49 Identities=12% Similarity=0.203 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHcCCCcccEEEccCCCCCC----CHHHHHHHHHHHHHcCC
Q 025500 107 PDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV----PIEETIGEMKKLVEEGK 155 (252)
Q Consensus 107 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~----~~~~~~~~L~~l~~~G~ 155 (252)
-+.+++.|++--++-|+|.+=+++..+-+... ...+.+++|++..+++.
T Consensus 206 ve~ir~DIr~Fk~~n~ld~vVVlwtAsTEr~~~~~~~~~~t~~~l~~ai~~~~ 258 (510)
T PLN02438 206 MDQIRKDIREFKEKNKVDKVVVLWTANTERYSNVVVGLNDTMENLLASIEKDE 258 (510)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEECCCCCCCCcCCCcccCCHHHHHHHHhcCC
Confidence 56788889999999999987777776654432 23467888888888764
No 295
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=29.10 E-value=2.9e+02 Score=22.81 Aligned_cols=100 Identities=20% Similarity=0.194 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHHC-CCCEEeCcCCcCCCcHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHH
Q 025500 39 SEEDGISMIKHAFSK-GITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEAS 117 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~-Gin~~Dta~~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 117 (252)
..+++..+.+...+. |+-|...++=|= +-+...+..+..+.-+ +++-.. +.+.+ .+.+.
T Consensus 11 ~~eda~~a~~~gad~iG~If~~~SpR~V---s~~~a~~i~~~v~~~~-----~VgVf~--------n~~~~----~i~~i 70 (208)
T COG0135 11 RLEDAKAAAKAGADYIGFIFVPKSPRYV---SPEQAREIASAVPKVK-----VVGVFV--------NESIE----EILEI 70 (208)
T ss_pred CHHHHHHHHHcCCCEEEEEEcCCCCCcC---CHHHHHHHHHhCCCCC-----EEEEEC--------CCCHH----HHHHH
Confidence 567777666664444 666666676664 5555555555444311 222211 22343 34455
Q ss_pred HHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCC
Q 025500 118 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS 165 (252)
Q Consensus 118 L~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~ 165 (252)
++.++ +|++|||...+. +..+.|.+...-..+++|.++.-.
T Consensus 71 ~~~~~---ld~VQlHG~e~~----~~~~~l~~~~~~~v~kai~v~~~~ 111 (208)
T COG0135 71 AEELG---LDAVQLHGDEDP----EYIDQLKEELGVPVIKAISVSEEG 111 (208)
T ss_pred HHhcC---CCEEEECCCCCH----HHHHHHHhhcCCceEEEEEeCCcc
Confidence 55554 699999997432 233333333334689999998643
No 296
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.08 E-value=4.2e+02 Score=23.67 Aligned_cols=88 Identities=15% Similarity=0.175 Sum_probs=55.8
Q ss_pred EEEccCCCCC-----------CCHHHHHHHHHHHHHc-CC---ccEEEcc--CCCHHHHHHHh---hcCCceEEeeecCc
Q 025500 128 LYYQHRVDTS-----------VPIEETIGEMKKLVEE-GK---IKYIGLS--EASPGTIRRAH---AVHPITAVQMEWSL 187 (252)
Q Consensus 128 l~~lh~~~~~-----------~~~~~~~~~L~~l~~~-G~---ir~iGvs--~~~~~~l~~~~---~~~~~~~~q~~~~~ 187 (252)
.+.||.|+.+ .+++++++++.++.++ |+ ++++=+. |.+.+.++++. +..+..++-++||.
T Consensus 215 aiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIPyN~ 294 (342)
T PRK14465 215 AISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIPLNT 294 (342)
T ss_pred EEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEccCC
Confidence 4677888653 2467889998877644 33 3354443 34555555544 33457788888887
Q ss_pred ccc----c-hh--hhHHHHHHHhCCeEEecccCcc
Q 025500 188 WTR----D-IE--EEIIPLCRELGIGIVPYSPLGR 215 (252)
Q Consensus 188 ~~~----~-~~--~~l~~~~~~~gi~v~a~spl~~ 215 (252)
... . .+ ....+..+++|+.+......+.
T Consensus 295 ~~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~ 329 (342)
T PRK14465 295 EFFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGK 329 (342)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 431 1 11 4566667888999998887764
No 297
>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]
Probab=29.04 E-value=2e+02 Score=26.37 Aligned_cols=49 Identities=10% Similarity=0.096 Sum_probs=34.6
Q ss_pred HHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccC
Q 025500 115 EASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE 163 (252)
Q Consensus 115 ~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~ 163 (252)
..++..+|..-++.|+=.......+..+.-+.+++.++.=.+|.+-|-|
T Consensus 175 sAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvIN 223 (475)
T KOG0258|consen 175 SATISLLGGTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVIN 223 (475)
T ss_pred HHHHHHhCCcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEEC
Confidence 3456667777777777666666667777778888888655677777766
No 298
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=29.04 E-value=2.6e+02 Score=21.16 Aligned_cols=81 Identities=20% Similarity=0.189 Sum_probs=44.2
Q ss_pred HHHHHHhcC--CCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHHHHHcC--CCcccEEEccCCCCCCCH-HHHHHH
Q 025500 72 LLGKALKQL--PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLD--VDYIDLYYQHRVDTSVPI-EETIGE 146 (252)
Q Consensus 72 ~ig~~l~~~--~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg--~d~iDl~~lh~~~~~~~~-~~~~~~ 146 (252)
.|.++++.. +...++++...-+..... ..+.=...+.+..+...++|+ ...+.+.+.-......-+ ..+-++
T Consensus 6 ~I~~~~~~~~~~~~~llfsaHgiP~~~~~---~gd~Y~~~~~~~~~~v~~~l~~~~~~~~~~fqS~~g~~~Wl~P~~~~~ 82 (135)
T cd00419 6 HIREALAELPREKDRLLFSAHGLPVRDIK---KGDPYPDQCEETARLVAERLGLPFDEYELAYQSRFGPGEWLEPSTDDA 82 (135)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCHHHHhh---CCCCHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCCCCCCCCCHHHH
Confidence 344455433 445566666654433110 011226778888888889998 444555555322221111 146678
Q ss_pred HHHHHHcCC
Q 025500 147 MKKLVEEGK 155 (252)
Q Consensus 147 L~~l~~~G~ 155 (252)
|+++.++|.
T Consensus 83 l~~l~~~G~ 91 (135)
T cd00419 83 LEELAKEGV 91 (135)
T ss_pred HHHHHHcCC
Confidence 888988873
No 299
>PRK07671 cystathionine beta-lyase; Provisional
Probab=28.79 E-value=3.5e+02 Score=24.23 Aligned_cols=55 Identities=9% Similarity=0.064 Sum_probs=34.8
Q ss_pred CCHHHHHHHhhc-CCceEEeeecCccccch-hhhHHHHHHHhCCeEEecccCccccC
Q 025500 164 ASPGTIRRAHAV-HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRGFF 218 (252)
Q Consensus 164 ~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~-~~~l~~~~~~~gi~v~a~spl~~G~L 218 (252)
.+.+.+++++.. ....++..+.|+.-... ..++.+.|+++|+.++.=..++.+.+
T Consensus 122 ~d~~~l~~ai~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~~~ 178 (377)
T PRK07671 122 SNLEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYW 178 (377)
T ss_pred CCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCcccc
Confidence 456666666542 33445555566543322 27889999999999998777765443
No 300
>COG5310 Homospermidine synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.70 E-value=4.4e+02 Score=23.75 Aligned_cols=180 Identities=17% Similarity=0.155 Sum_probs=92.7
Q ss_pred CCccccccCceecCCCCccccceeecccccCC--------CCCC----CCCHHHHHHHHHHHHHCCCCEEeCcCCcCCCc
Q 025500 1 MAEEKHQVPRVKLGTQGLEVSKLGYGCMNLSG--------GYSS----PVSEEDGISMIKHAFSKGITFFDTADVYGQNA 68 (252)
Q Consensus 1 m~~~~~~m~~~~lg~~g~~vs~lglG~~~~g~--------~~~~----~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~ 68 (252)
||..+-+|.--. .-.|-.||||..+-|. .+.. ..++++ +..+..-+.||+|+-.+-.-.+
T Consensus 1 M~~~~~~vygei----tgpIimIGfGSigrgTLPLierhf~~d~~~~~viDp~e--k~~k~~~~~girfV~e~it~~N-- 72 (481)
T COG5310 1 MADENWPVYGEI----TGPIIMIGFGSIGRGTLPLIERHFKFDRSRMVVIDPRE--KDRKILDERGIRFVQEAITRDN-- 72 (481)
T ss_pred CCCcccceeeec----cCcEEEEeecccccccchhHHHhcCCChhheEEechhH--HHHHHHHhhhhHHHHHhcChhh--
Confidence 666665543322 2246678998765443 1111 123333 5566667789998876532221
Q ss_pred HHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCH-----HHH
Q 025500 69 NEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPI-----EET 143 (252)
Q Consensus 69 se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~-----~~~ 143 (252)
-.+.++..|+...-+-+.|--.+- .-.-.+-+.|+++|+=|||-+.=-|.....+. .+.
T Consensus 73 yk~vL~pll~~~~gqgf~vnLSvd----------------~~s~Dlmr~crk~~vLYidTvVEpW~gfyfDa~adn~art 136 (481)
T COG5310 73 YKDVLKPLLKGVGGQGFCVNLSVD----------------TSSLDLMRLCRKHGVLYIDTVVEPWLGFYFDAQADNAART 136 (481)
T ss_pred HHHHHHHHhhcCCCceEEEEeEec----------------cchhHHHHHHHHcCeEEEeeeeccccccchhhhhhhhhhh
Confidence 235566666644444454432221 11235667899999999999888887443321 223
Q ss_pred HHHHHHHHHcCC------ccEEEccCCCHHHH----HHH----hhcCCceEEeeecCccccchhhhHHHHHHHhCCeEEe
Q 025500 144 IGEMKKLVEEGK------IKYIGLSEASPGTI----RRA----HAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVP 209 (252)
Q Consensus 144 ~~~L~~l~~~G~------ir~iGvs~~~~~~l----~~~----~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a 209 (252)
=-+|.+.+-+-+ -.++--+.-++..+ +++ ..... +++..-.++..++-..++++.|+..|-
T Consensus 137 nyaLRet~lrEk~r~pgg~TaVs~cGANPGmvswFVKqaLvdlAad~~-----ld~~ep~~ddr~gwAkLmkK~GVkgiH 211 (481)
T COG5310 137 NYALRETVLREKRRNPGGPTAVSTCGANPGMVSWFVKQALVDLAADLG-----LDFEEPAQDDREGWAKLMKKAGVKGIH 211 (481)
T ss_pred hHHHHHHHHHHhccCCCCCeeeeecCCCchHHHHHHHHHHHHHHHHhC-----cCccCCcchhhHHHHHHHHHcCCceEE
Confidence 334555544333 33343344444321 111 11111 112221222237788888999887663
No 301
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=28.66 E-value=81 Score=27.45 Aligned_cols=17 Identities=29% Similarity=0.589 Sum_probs=15.3
Q ss_pred hhHHHHHHHhCCeEEec
Q 025500 194 EEIIPLCRELGIGIVPY 210 (252)
Q Consensus 194 ~~l~~~~~~~gi~v~a~ 210 (252)
.+++++|+++||.||.-
T Consensus 75 ~elv~yA~~rgI~viPE 91 (303)
T cd02742 75 KDIIEYAAARGIEVIPE 91 (303)
T ss_pred HHHHHHHHHcCCEEEEe
Confidence 89999999999999843
No 302
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.60 E-value=3.7e+02 Score=24.08 Aligned_cols=147 Identities=19% Similarity=0.208 Sum_probs=80.1
Q ss_pred cccCceecCCCCccccceeecccccCCCCCCCCCHHHHHHHHHHHHHCCCC--EEeCcCCcCCCcHHHHHHHHHhcCCCC
Q 025500 6 HQVPRVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGIT--FFDTADVYGQNANEVLLGKALKQLPRE 83 (252)
Q Consensus 6 ~~m~~~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin--~~Dta~~Yg~g~se~~ig~~l~~~~R~ 83 (252)
.+|.+..++ .|..+-.+|+|. +| .-.++.|-..|.+ .||+++. ..|+.+ +...-+
T Consensus 172 spLk~~g~~-pG~~vgI~GlGG--LG------------h~aVq~AKAMG~rV~vis~~~~----kkeea~----~~LGAd 228 (360)
T KOG0023|consen 172 SPLKRSGLG-PGKWVGIVGLGG--LG------------HMAVQYAKAMGMRVTVISTSSK----KKEEAI----KSLGAD 228 (360)
T ss_pred ehhHHcCCC-CCcEEEEecCcc--cc------------hHHHHHHHHhCcEEEEEeCCch----hHHHHH----HhcCcc
Confidence 357777785 788888888886 44 3356666667766 6776642 145544 434556
Q ss_pred CEEEEeccCccCCCCcccccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccC
Q 025500 84 KIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE 163 (252)
Q Consensus 84 ~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~ 163 (252)
.++++++- ++.+ +++..+++ .+.+.+--+ ...+ .-..++-+|..|++-.+|+-.
T Consensus 229 ~fv~~~~d---------------~d~~-~~~~~~~d-g~~~~v~~~------a~~~---~~~~~~~lk~~Gt~V~vg~p~ 282 (360)
T KOG0023|consen 229 VFVDSTED---------------PDIM-KAIMKTTD-GGIDTVSNL------AEHA---LEPLLGLLKVNGTLVLVGLPE 282 (360)
T ss_pred eeEEecCC---------------HHHH-HHHHHhhc-Ccceeeeec------cccc---hHHHHHHhhcCCEEEEEeCcC
Confidence 66666553 2222 23333322 122111111 2222 234567788999999999977
Q ss_pred CCHHHHHHHhhcCCc--eEEeeecCccccchh-hhHHHHHHHhCCe
Q 025500 164 ASPGTIRRAHAVHPI--TAVQMEWSLWTRDIE-EEIIPLCRELGIG 206 (252)
Q Consensus 164 ~~~~~l~~~~~~~~~--~~~q~~~~~~~~~~~-~~l~~~~~~~gi~ 206 (252)
.... + ...++ .-+.+.-|..-...+ +++++||.+++|.
T Consensus 283 ~~~~-~----~~~~lil~~~~I~GS~vG~~ket~E~Ldf~a~~~ik 323 (360)
T KOG0023|consen 283 KPLK-L----DTFPLILGRKSIKGSIVGSRKETQEALDFVARGLIK 323 (360)
T ss_pred Cccc-c----cchhhhcccEEEEeeccccHHHHHHHHHHHHcCCCc
Confidence 5321 1 11111 112233333332223 8899999999885
No 303
>PRK10508 hypothetical protein; Provisional
Probab=28.41 E-value=99 Score=27.42 Aligned_cols=41 Identities=15% Similarity=0.160 Sum_probs=27.6
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHH
Q 025500 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKL 150 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l 150 (252)
-+++.+.+.+++..+++|+|.+ +++.+. .+.++.++.++-|
T Consensus 286 Gtpe~V~~kl~~l~~~~g~del-~~~~~~----~~~e~~~~S~~ll 326 (333)
T PRK10508 286 GDKAKVRHGLQSILRETQADEI-MVNGQI----FDHQARLHSFELA 326 (333)
T ss_pred eCHHHHHHHHHHHHHHHCcCEE-EEECCC----CCHHHHHHHHHHH
Confidence 5799999999999999999887 333333 2344444444433
No 304
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=28.41 E-value=3.7e+02 Score=24.15 Aligned_cols=55 Identities=5% Similarity=0.086 Sum_probs=34.1
Q ss_pred CCHHHHHHHhhc-CCceEEeeecCccccch-hhhHHHHHHHhCCeEEecccCccccC
Q 025500 164 ASPGTIRRAHAV-HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRGFF 218 (252)
Q Consensus 164 ~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~-~~~l~~~~~~~gi~v~a~spl~~G~L 218 (252)
.+.+.+++++.. ....+++.+-|+.-... .+++.++|+++|+.++.=...+.+.+
T Consensus 122 ~d~e~l~~ai~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~~~ 178 (380)
T PRK06176 122 SDLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYY 178 (380)
T ss_pred CCHHHHHHhcCcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCcccccc
Confidence 356666666542 23334444555433322 27899999999999998888775543
No 305
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=28.22 E-value=2.6e+02 Score=22.90 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEeC
Q 025500 39 SEEDGISMIKHAFSKGITFFDT 60 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dt 60 (252)
-+|.....++.|++.|...|++
T Consensus 12 ~pENTl~af~~A~~~Gad~iE~ 33 (226)
T cd08568 12 YPENTLEAFKKAIEYGADGVEL 33 (226)
T ss_pred CCcchHHHHHHHHHcCcCEEEE
Confidence 3588899999999999998873
No 306
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=28.12 E-value=3.8e+02 Score=22.81 Aligned_cols=119 Identities=11% Similarity=0.117 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEE-e-CcCCcCCCc-HHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHH
Q 025500 38 VSEEDGISMIKHAFSKGITFF-D-TADVYGQNA-NEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (252)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~-D-ta~~Yg~g~-se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 114 (252)
.+.++..+.++.+.+.|++.| - ++..+.... .++.+....+...+-.+.+....+. .+. ..
T Consensus 62 ~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~g~-----------~~~-----e~ 125 (296)
T TIGR00433 62 KKVDEVLEEARKAKAAGATRFCLVASGRGPKDREFMEYVEAMVQIVEEMGLKTCATLGL-----------LDP-----EQ 125 (296)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCeEEecCCC-----------CCH-----HH
Confidence 356777777777788899753 2 222222111 2344544433222223333322221 222 33
Q ss_pred HHHHHHcCCCcccEEEccCC------CCCCCHHHHHHHHHHHHHcCCcc----EEEccCCCHHHHHHHh
Q 025500 115 EASLKRLDVDYIDLYYQHRV------DTSVPIEETIGEMKKLVEEGKIK----YIGLSEASPGTIRRAH 173 (252)
Q Consensus 115 ~~sL~~Lg~d~iDl~~lh~~------~~~~~~~~~~~~L~~l~~~G~ir----~iGvs~~~~~~l~~~~ 173 (252)
-+.|+..|++.+-+-+=.++ ......++.+++++.+++.|.-- -+|+ +.+.+.+.+.+
T Consensus 126 l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl-~et~~d~~~~~ 193 (296)
T TIGR00433 126 AKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIFGL-GETVEDRIGLA 193 (296)
T ss_pred HHHHHHcCCCEEEEcccCCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEEeC-CCCHHHHHHHH
Confidence 34577778776443322111 11235678899999999998632 2677 66766655543
No 307
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=27.88 E-value=2.9e+02 Score=25.20 Aligned_cols=83 Identities=18% Similarity=0.163 Sum_probs=45.0
Q ss_pred cccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhcC---CceEEeeecCccccchhhhHHHHHH
Q 025500 125 YIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVH---PITAVQMEWSLWTRDIEEEIIPLCR 201 (252)
Q Consensus 125 ~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~---~~~~~q~~~~~~~~~~~~~l~~~~~ 201 (252)
.+|++.|+.-..+. .++..+..++..+.=. .-+=+...+++.++++++.. .+-. | ....+.-+++.+.|+
T Consensus 69 ~~D~Ialr~~S~DP-ae~fa~~vk~V~~a~~-~PLIL~~~D~evl~aale~~~~~kpLL----~-aAt~eNyk~m~~lA~ 141 (386)
T PF03599_consen 69 GADMIALRLESGDP-AEEFAKAVKKVAEAVD-VPLILCGCDPEVLKAALEACAGKKPLL----Y-AATEENYKAMAALAK 141 (386)
T ss_dssp E-SEEEEE-GGGST-HHHHHHHHHHHHHC-S-SEEEEESSHHHHHHHHHHHTTTS--EE----E-EEBTTTHHHHHHHHH
T ss_pred cccEEEEEecCCCh-HHHHHHHHHHHHHhcC-CCEEEEeCCHHHHHHHHHHhCcCCcEE----e-EcCHHHHHHHHHHHH
Confidence 57888887754322 4555566665555433 23334444888888877652 1111 1 111111278888899
Q ss_pred HhCCeEEecccCc
Q 025500 202 ELGIGIVPYSPLG 214 (252)
Q Consensus 202 ~~gi~v~a~spl~ 214 (252)
++|..+++.+|..
T Consensus 142 ~y~~pl~v~sp~D 154 (386)
T PF03599_consen 142 EYGHPLIVSSPID 154 (386)
T ss_dssp HCT-EEEEE-SSC
T ss_pred HcCCeEEEEeccc
Confidence 9999999988764
No 308
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=27.72 E-value=2.4e+02 Score=20.37 Aligned_cols=75 Identities=17% Similarity=0.163 Sum_probs=55.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCC-EEeCcCCcCCCcHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHH
Q 025500 36 SPVSEEDGISMIKHAFSKGIT-FFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (252)
Q Consensus 36 ~~~~~~~~~~~l~~A~~~Gin-~~Dta~~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 114 (252)
.+.+.++..+.+++++..|.+ .++-++. ...|...+-+-|+.... ..++..+...|
T Consensus 10 p~lt~~~i~~QI~yll~qG~~~~lE~ad~---------------~~~~~~yW~mwklP~f~--------~~d~~~Vl~ei 66 (99)
T cd03527 10 PPLTDEQIAKQIDYIISNGWAPCLEFTEP---------------EHYDNRYWTMWKLPMFG--------CTDPAQVLREI 66 (99)
T ss_pred CCCCHHHHHHHHHHHHhCCCEEEEEcccC---------------CCCCCCEEeeccCCCCC--------CCCHHHHHHHH
Confidence 345789999999999999987 3443322 13667777777776544 34688899999
Q ss_pred HHHHHHcCCCcccEEEccC
Q 025500 115 EASLKRLDVDYIDLYYQHR 133 (252)
Q Consensus 115 ~~sL~~Lg~d~iDl~~lh~ 133 (252)
++.++.---+||-|+-+..
T Consensus 67 ~~C~~~~p~~YVRliG~D~ 85 (99)
T cd03527 67 EACRKAYPDHYVRVVGFDN 85 (99)
T ss_pred HHHHHHCCCCeEEEEEEeC
Confidence 9999998888888776654
No 309
>PRK08123 histidinol-phosphatase; Reviewed
Probab=27.71 E-value=3.8e+02 Score=22.72 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHCCCCEEeCcCCc
Q 025500 41 EDGISMIKHAFSKGITFFDTADVY 64 (252)
Q Consensus 41 ~~~~~~l~~A~~~Gin~~Dta~~Y 64 (252)
+...+.+++|.+.|+..|=.++|.
T Consensus 19 ~~~e~~v~~Ai~~Gl~~i~~tdH~ 42 (270)
T PRK08123 19 DDLEAYIERAIELGFTEITFTEHA 42 (270)
T ss_pred CCHHHHHHHHHHcCCcEEEEeccC
Confidence 346899999999999987777663
No 310
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.70 E-value=3.3e+02 Score=24.37 Aligned_cols=71 Identities=10% Similarity=0.105 Sum_probs=46.4
Q ss_pred ccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHH-cCC---ccEEEccCCC-HHHHHHHhh
Q 025500 102 IVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVE-EGK---IKYIGLSEAS-PGTIRRAHA 174 (252)
Q Consensus 102 ~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~-~G~---ir~iGvs~~~-~~~l~~~~~ 174 (252)
....+.+.+.+++.......+++.+ .+.-.-++....++++++++.+.+ .|. .++|-||+.. .+.+.++..
T Consensus 128 ~r~lt~~EI~~qv~~~~~~~~i~~I--vfmG~GEPl~n~~~vi~~l~~l~~~~gl~~s~r~itVsTnGl~~~i~~l~~ 203 (349)
T PRK14463 128 TRNLTTAEIVNQVCAVKRDVPVRNI--VFMGMGEPLANLDNVIPALQILTDPDGLQFSTRKVTVSTSGLVPEMEELGR 203 (349)
T ss_pred CCCCCHHHHHHHHHHHHhcCCccEE--EEecCCcchhcHHHHHHHHHHhhcccccCcCCceEEEECCCchHHHHHHhh
Confidence 4567899999998887766665443 444333333456788889998886 565 4788887755 345555544
No 311
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=27.68 E-value=3.7e+02 Score=24.22 Aligned_cols=88 Identities=17% Similarity=0.073 Sum_probs=49.7
Q ss_pred cEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhc-CCceEEeeecCccccc-hhhhHHHHHHHhC
Q 025500 127 DLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV-HPITAVQMEWSLWTRD-IEEEIIPLCRELG 204 (252)
Q Consensus 127 Dl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~-~~~~l~~~~~~~g 204 (252)
|-+++..|.. ......+..+...+.+...-+...+.+.+++++.. .++.++..+-|+.-.- ...++.+.|+++|
T Consensus 92 D~Vl~~~~~y----~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~l~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g 167 (386)
T PRK08045 92 DLLVAPHDCY----GGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREAG 167 (386)
T ss_pred CEEEEcCCCc----HHHHHHHHHHHhhCCeEEEEeCCCCHHHHHHhcccCCeEEEEECCCCCCCEecCHHHHHHHHHHcC
Confidence 5566555432 22334444444444333333444667777776643 2334444444443221 2378999999999
Q ss_pred CeEEecccCccccC
Q 025500 205 IGIVPYSPLGRGFF 218 (252)
Q Consensus 205 i~v~a~spl~~G~L 218 (252)
+.++.=..++.+.+
T Consensus 168 ~~vivDeay~~~~~ 181 (386)
T PRK08045 168 AVSVVDNTFLSPAL 181 (386)
T ss_pred CEEEEECCCCcccc
Confidence 99998888776644
No 312
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=27.62 E-value=50 Score=25.19 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=13.0
Q ss_pred HHHHHHHHHCCCCEEeCc
Q 025500 44 ISMIKHAFSKGITFFDTA 61 (252)
Q Consensus 44 ~~~l~~A~~~Gin~~Dta 61 (252)
...+...++.|||+||--
T Consensus 29 ~~~i~~QL~~GiR~lDlr 46 (146)
T PF00388_consen 29 SWSIREQLESGIRYLDLR 46 (146)
T ss_dssp SHHHHHHHHTT--EEEEE
T ss_pred hHhHHHHHhccCceEEEE
Confidence 457888999999999953
No 313
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=27.20 E-value=4.3e+02 Score=23.24 Aligned_cols=23 Identities=13% Similarity=0.224 Sum_probs=19.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEeC
Q 025500 38 VSEEDGISMIKHAFSKGITFFDT 60 (252)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dt 60 (252)
++.++..++++.+.+.|+..|.-
T Consensus 37 l~~e~~~~ii~~~~~~g~~~v~~ 59 (358)
T TIGR02109 37 LTTEEWTDVLTQAAELGVLQLHF 59 (358)
T ss_pred CCHHHHHHHHHHHHhcCCcEEEE
Confidence 57889999999999999887763
No 314
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=27.09 E-value=2.9e+02 Score=23.46 Aligned_cols=70 Identities=19% Similarity=0.181 Sum_probs=51.7
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCC-CHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhh
Q 025500 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV-PIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHA 174 (252)
Q Consensus 104 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~-~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~ 174 (252)
+.+.+....-.+-+.+.+++++|-+=.+-+++.-. +.-+++++-+.|+++|-+-. =-++.++-..+++.+
T Consensus 79 c~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~Vl-PY~~dD~v~arrLee 149 (262)
T COG2022 79 CRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVL-PYTTDDPVLARRLEE 149 (262)
T ss_pred cCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEe-eccCCCHHHHHHHHh
Confidence 46788888888999999999999999887765533 46689999999999997643 334444444444444
No 315
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=26.96 E-value=1.3e+02 Score=24.04 Aligned_cols=39 Identities=15% Similarity=0.319 Sum_probs=28.7
Q ss_pred cccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccC
Q 025500 125 YIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE 163 (252)
Q Consensus 125 ~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~ 163 (252)
.-++++++.........+-++.|..+..+|++|++-+.-
T Consensus 77 sn~l~lv~~~~rNp~S~~hvq~l~~l~nqg~Lr~~nLG~ 115 (173)
T PF10171_consen 77 SNDLLLVSPAIRNPTSDKHVQRLMRLRNQGRLRYLNLGL 115 (173)
T ss_pred hCceeccChhhcCchHHHHHHHHHHHhcCCceEEeeeee
Confidence 346777765544444567899999999999999985543
No 316
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=26.92 E-value=3.1e+02 Score=22.60 Aligned_cols=52 Identities=15% Similarity=0.144 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHHHC-----CCCEEeCcCCcCCCcHHHHHHHHHhc-CCCCCEEEEeccC
Q 025500 38 VSEEDGISMIKHAFSK-----GITFFDTADVYGQNANEVLLGKALKQ-LPREKIQVATKFG 92 (252)
Q Consensus 38 ~~~~~~~~~l~~A~~~-----Gin~~Dta~~Yg~g~se~~ig~~l~~-~~R~~~~i~tK~~ 92 (252)
+++++..+.+..|++. |+|---.+.... +++.+...++. ..|.-+||=++..
T Consensus 71 ~~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T~---~~~~m~~vl~~l~~~gl~FvDS~T~ 128 (213)
T PF04748_consen 71 MSEEEIRKRLEAALARVPGAVGVNNHMGSRFTS---DREAMRWVLEVLKERGLFFVDSRTT 128 (213)
T ss_dssp S-HHHHHHHHHHHHCCSTT-SEEEEEE-CCHHC----HHHHHHHHHHHHHTT-EEEE-S--
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEecCCCccccC---CHHHHHHHHHHHHHcCCEEEeCCCC
Confidence 4889999999999998 555332232332 67777766665 3566667745543
No 317
>PRK13561 putative diguanylate cyclase; Provisional
Probab=26.92 E-value=2.5e+02 Score=27.07 Aligned_cols=70 Identities=14% Similarity=0.280 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHcCCccEEEccCCCH--HHHHHHhh--cCCceEEeeecCcccc-----chhhhHHHHHHHhCCeEEec
Q 025500 140 IEETIGEMKKLVEEGKIKYIGLSEASP--GTIRRAHA--VHPITAVQMEWSLWTR-----DIEEEIIPLCRELGIGIVPY 210 (252)
Q Consensus 140 ~~~~~~~L~~l~~~G~ir~iGvs~~~~--~~l~~~~~--~~~~~~~q~~~~~~~~-----~~~~~l~~~~~~~gi~v~a~ 210 (252)
.+.+.+.++.+++.|- .|++.+|+. ..+..+.. ..|++.+-++-++... ..-+.++..|+..|+.|+|-
T Consensus 533 ~~~~~~~~~~l~~~G~--~i~lddfG~g~ssl~~L~~l~~l~~d~lKiD~s~i~~i~~~~~~v~~i~~~a~~l~i~viAe 610 (651)
T PRK13561 533 PHAAVAILRPLRNAGV--RVALDDFGMGYAGLRQLQHMKSLPIDVLKIDKMFVDGLPEDDSMVAAIIMLAQSLNLQVIAE 610 (651)
T ss_pred HHHHHHHHHHHHHCCC--EEEEECCCCCcccHHHHhhcCCCCCcEEEECHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEe
Confidence 4567788999999998 566666553 23333332 2466777665433221 12277899999999999975
Q ss_pred c
Q 025500 211 S 211 (252)
Q Consensus 211 s 211 (252)
.
T Consensus 611 g 611 (651)
T PRK13561 611 G 611 (651)
T ss_pred c
Confidence 4
No 318
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=26.74 E-value=4.7e+02 Score=23.50 Aligned_cols=162 Identities=15% Similarity=0.178 Sum_probs=89.9
Q ss_pred CCCCCCHHHHHHHHHHHHHC-CCCE---EeCcCCcCCCc---HHHHHHHHHhc--------CCCCCEEEEeccCccCCCC
Q 025500 34 YSSPVSEEDGISMIKHAFSK-GITF---FDTADVYGQNA---NEVLLGKALKQ--------LPREKIQVATKFGIAGIGV 98 (252)
Q Consensus 34 ~~~~~~~~~~~~~l~~A~~~-Gin~---~Dta~~Yg~g~---se~~ig~~l~~--------~~R~~~~i~tK~~~~~~~~ 98 (252)
+.......+..+.+..|-+. |-.. +----.=|.|. +.+.+-.+++- +....+.|+|--
T Consensus 125 ~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEPl~N~dnV~~a~~i~~~~~G~~ls~R~iTvSTsG------- 197 (349)
T COG0820 125 LNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEPLLNLDNVVKALEIINDDEGLGLSKRRITVSTSG------- 197 (349)
T ss_pred ceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecCCchhhhHHHHHHHHHhhcCcccccccceEEEEecCC-------
Confidence 33445778888777777643 3211 00000113332 56667777763 223345555543
Q ss_pred cccccCCChHHHHHHHHHHH-HHcCCCcccEEEccCCCCC-----------CCHHHHHHHHHHHHHcCCccEEEcc----
Q 025500 99 AGVIVKGAPDYVRSCCEASL-KRLDVDYIDLYYQHRVDTS-----------VPIEETIGEMKKLVEEGKIKYIGLS---- 162 (252)
Q Consensus 99 ~~~~~~~~~~~i~~~~~~sL-~~Lg~d~iDl~~lh~~~~~-----------~~~~~~~~~L~~l~~~G~ir~iGvs---- 162 (252)
+...+.+.. +.+++ .=.+.||.|++. .++++.+++.+...+... +.|-+-
T Consensus 198 -----------i~~~I~~l~~~~~~v--~LAiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll 263 (349)
T COG0820 198 -----------IVPRIRKLADEQLGV--ALAISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLL 263 (349)
T ss_pred -----------CchhHHHHHhhcCCe--EEEEecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeec
Confidence 222333333 34433 234678998653 346777888777765544 433221
Q ss_pred ---CCCHHHHHHHhhc---CCceEEeeecCccccch-----h---hhHHHHHHHhCCeEEecccCccc
Q 025500 163 ---EASPGTIRRAHAV---HPITAVQMEWSLWTRDI-----E---EEIIPLCRELGIGIVPYSPLGRG 216 (252)
Q Consensus 163 ---~~~~~~l~~~~~~---~~~~~~q~~~~~~~~~~-----~---~~l~~~~~~~gi~v~a~spl~~G 216 (252)
|.+.++.+++.+. .+..++-++||++.... . ....+..+++||.+....+-+..
T Consensus 264 ~~VND~~e~A~~L~~ll~~~~~~VNLIP~Np~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g~D 331 (349)
T COG0820 264 DGVNDSLEHAKELAKLLKGIPCKVNLIPYNPVPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRGDD 331 (349)
T ss_pred ccccCCHHHHHHHHHHhcCCCceEEEeecCCCCCCCccCCcHHHHHHHHHHHHhCCeeEEeccccccc
Confidence 3446665555444 55689999999987532 1 44555566788998888776543
No 319
>PLN02590 probable tyrosine decarboxylase
Probab=26.66 E-value=3.1e+02 Score=26.16 Aligned_cols=27 Identities=7% Similarity=-0.048 Sum_probs=20.9
Q ss_pred hhhHHHHHHHhCCeEEecccCccccCC
Q 025500 193 EEEIIPLCRELGIGIVPYSPLGRGFFG 219 (252)
Q Consensus 193 ~~~l~~~~~~~gi~v~a~spl~~G~L~ 219 (252)
-.++.+.|+++|+-+-+=..+++..+.
T Consensus 306 l~~Ia~i~~~~g~WlHVDaA~GG~al~ 332 (539)
T PLN02590 306 LVPLGNIAKKYGIWLHVDAAYAGNACI 332 (539)
T ss_pred HHHHHHHHHHhCCeEEEecchhhhhhc
Confidence 378888899999888888888766544
No 320
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=26.63 E-value=3.8e+02 Score=22.35 Aligned_cols=98 Identities=16% Similarity=0.295 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCc------cEEEccCCCHHHHHHHhh---cCC
Q 025500 107 PDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKI------KYIGLSEASPGTIRRAHA---VHP 177 (252)
Q Consensus 107 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~i------r~iGvs~~~~~~l~~~~~---~~~ 177 (252)
.......++..-+.-+...++-+++..-+......|.+.-.+.|.+.|.- .+-|+++.+ .+.++.+ ...
T Consensus 75 N~yy~~Ri~aA~~ly~~gKV~~LLlSGDN~~~sYnEp~tM~kdL~~~GVp~~~i~lDyAGFrTLD--SvvRA~kVF~~~~ 152 (235)
T COG2949 75 NRYYTYRIDAAIALYKAGKVNYLLLSGDNATVSYNEPRTMRKDLIAAGVPAKNIFLDYAGFRTLD--SVVRARKVFGTND 152 (235)
T ss_pred cHhHHHHHHHHHHHHhcCCeeEEEEecCCCcccccchHHHHHHHHHcCCCHHHeeecccCccHHH--HHHHHHHHcCcCc
Confidence 44566778888888888889999998877777888999999999999873 344655533 3344433 345
Q ss_pred ceEEeeecCccccchhhhHHHHHHHhCCeEEeccc
Q 025500 178 ITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSP 212 (252)
Q Consensus 178 ~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~sp 212 (252)
|.++--+|+. +..+=.|+.+||.-+++..
T Consensus 153 ftIItQ~FHc------eRAlfiA~~~gIdAic~~a 181 (235)
T COG2949 153 FTIITQRFHC------ERALFIARQMGIDAICFAA 181 (235)
T ss_pred EEEEeccccc------HHHHHHHHHhCCceEEecC
Confidence 6555545543 5667789999998887654
No 321
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=26.60 E-value=5.6e+02 Score=24.32 Aligned_cols=156 Identities=13% Similarity=0.066 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCCC-cHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQN-ANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEAS 117 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g-~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 117 (252)
+.++....++.+...|+.+++-=-.|=.. ..+..+.+.++ ..+..+.++-+..... .....+.+.-.+-++ .
T Consensus 33 ~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~~~~-~~~~plI~T~R~~~eG-----G~~~~~~~~~~~ll~-~ 105 (529)
T PLN02520 33 SVDKMLIEMAKAKELGADLVEIRLDFLKNFNPREDLKTLIK-QSPLPTLVTYRPKWEG-----GQYEGDENKRQDALR-L 105 (529)
T ss_pred CHHHHHHHHHHhhhcCCCEEEEEeccccccCCHHHHHHHHh-cCCCcEEEEeccHHHC-----CCCCCCHHHHHHHHH-H
Confidence 56777777777777788877643222211 12344444444 2344566654432221 122234433333333 3
Q ss_pred HHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCC------HHHHHHHhhc---CCceEEeeecCcc
Q 025500 118 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS------PGTIRRAHAV---HPITAVQMEWSLW 188 (252)
Q Consensus 118 L~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~------~~~l~~~~~~---~~~~~~q~~~~~~ 188 (252)
.-+++.||+|+=+-. + +...+.+... +.+.++-|. |.|+ .+.+.+..+. ...+++-+=..+.
T Consensus 106 ~~~~~~d~iDiEl~~-~------~~~~~~~~~~-~~~~~~vI~-S~H~f~~tP~~~el~~~~~~~~~~gaDi~Kia~~~~ 176 (529)
T PLN02520 106 AMELGADYVDVELKV-A------HEFINSISGK-KPEKCKVIV-SSHNYENTPSVEELGNLVARIQATGADIVKIATTAL 176 (529)
T ss_pred HHHhCCCEEEEEcCC-c------hhHHHHHHhh-hhcCCEEEE-EecCCCCCCCHHHHHHHHHHHHHhCCCEEEEecCCC
Confidence 446789999983211 1 1222333333 345666665 5443 2333333322 2334444433333
Q ss_pred ccchhhhHHHHHHHhCCeEEec
Q 025500 189 TRDIEEEIIPLCRELGIGIVPY 210 (252)
Q Consensus 189 ~~~~~~~l~~~~~~~gi~v~a~ 210 (252)
.......++....+.+..++++
T Consensus 177 ~~~D~~~ll~~~~~~~~p~i~~ 198 (529)
T PLN02520 177 DITDVARMFQITVHSQVPTIGL 198 (529)
T ss_pred CHHHHHHHHHHHhhcCCCEEEE
Confidence 3322245565556667777743
No 322
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=26.59 E-value=3.3e+02 Score=25.09 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=17.4
Q ss_pred hhHHHHHHHhCCeEEecccCc
Q 025500 194 EEIIPLCRELGIGIVPYSPLG 214 (252)
Q Consensus 194 ~~l~~~~~~~gi~v~a~spl~ 214 (252)
.+++++|+++++.++.-...+
T Consensus 223 ~~l~~~~~~~~i~lI~DEiYa 243 (447)
T PLN02607 223 EDILDFVVRKNIHLVSDEIYS 243 (447)
T ss_pred HHHHHHHHHCCCEEEEecccc
Confidence 778999999999999766655
No 323
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=26.53 E-value=4.3e+02 Score=22.93 Aligned_cols=64 Identities=22% Similarity=0.331 Sum_probs=40.9
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCC-c-cEEEccCCCHHHHHHH
Q 025500 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-I-KYIGLSEASPGTIRRA 172 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~-i-r~iGvs~~~~~~l~~~ 172 (252)
.+.+.+.+-++...+ + .+-+.+-.--+|+. -.++.++.|.++++.|. + -++|+-+.+.+.++.+
T Consensus 91 l~~~~L~~l~~~i~~-~-~~~~~isi~trpd~--l~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i 156 (302)
T TIGR01212 91 APVEVLKEMYEQALS-Y-DDVVGLSVGTRPDC--VPDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKI 156 (302)
T ss_pred CCHHHHHHHHHHHhC-C-CCEEEEEEEecCCc--CCHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHH
Confidence 457777777776665 2 11122222223432 24568899999999998 5 5799999888776655
No 324
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=26.50 E-value=3.8e+02 Score=24.42 Aligned_cols=95 Identities=9% Similarity=0.106 Sum_probs=52.3
Q ss_pred CCCCEEeCcC--------CcCCCcHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccc--cCCChHHHHHHHHHHHHHcC
Q 025500 53 KGITFFDTAD--------VYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVI--VKGAPDYVRSCCEASLKRLD 122 (252)
Q Consensus 53 ~Gin~~Dta~--------~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~--~~~~~~~i~~~~~~sL~~Lg 122 (252)
..++|+||.. .|. |.....+-.+.+ ..|-++++.+.--..+..++-.. ....++.+.+.+.+.|++.|
T Consensus 291 ~~~~f~Dt~~~~t~~y~~~y~-g~~~p~l~~~~~-~~ryDlvlll~pd~Pwv~DGlR~~~D~e~R~~f~~~l~~~l~~~g 368 (399)
T PRK08099 291 NKVAFIDTDFVTTQAFCKKYE-GREHPFVQALID-EYRFDLTILLENNTPWVADGLRSLGSSVDRKRFQNLLKEMLKENN 368 (399)
T ss_pred CCeEEEeCChHHHHHHHHHhC-CCCCHHHHHHHH-hCCCCEEEEcCCCCCcccCCcccCCCHHHHHHHHHHHHHHHHHcC
Confidence 4799999965 222 223344444555 35555655554333332221111 11246788899999999999
Q ss_pred CCcccEEEccCCCCCCCHHHHHHHHHHHHH
Q 025500 123 VDYIDLYYQHRVDTSVPIEETIGEMKKLVE 152 (252)
Q Consensus 123 ~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~ 152 (252)
..++.+ -..+.......+.++++++..
T Consensus 369 ~~~v~l---~~g~~~eR~~~a~~~i~~~l~ 395 (399)
T PRK08099 369 IEYVHV---ESPDYDKRYLRCVELVDQMLG 395 (399)
T ss_pred CCEEEE---CCCCHHHHHHHHHHHHHHHhh
Confidence 875544 223333445556666666544
No 325
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=26.41 E-value=5.1e+02 Score=23.82 Aligned_cols=104 Identities=20% Similarity=0.163 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHHCCCC-EEeCcCCcCCCcHHHHHHHHHhcCCCCCEEEEeccCccCCC-CcccccCCChHHHHHHHHH
Q 025500 39 SEEDGISMIKHAFSKGIT-FFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIG-VAGVIVKGAPDYVRSCCEA 116 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin-~~Dta~~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~-~~~~~~~~~~~~i~~~~~~ 116 (252)
+.+.-.+-++.|++.|-. ..|.+- .| .-..+.+.+-. ...+-|.|=--+.... ......+.+.+.+.+.+++
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLSt-Gg---dl~~iR~~il~--~s~vpvGTVPiYqa~~~~~~~~~~mt~d~~~~~ie~ 148 (423)
T TIGR00190 75 DIEEEVEKALIAIKYGADTVMDLST-GG---DLDEIRKAILD--AVPVPVGTVPIYQAAEKVHGAVEDMDEDDMFRAIEK 148 (423)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeccC-CC---CHHHHHHHHHH--cCCCCccCccHHHHHHHhcCChhhCCHHHHHHHHHH
Confidence 566666779999999975 566553 34 33333333321 1222222211000000 0112345778888888887
Q ss_pred HHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEE
Q 025500 117 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYI 159 (252)
Q Consensus 117 sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~i 159 (252)
..+ +-+|.+-+|.-- ..+.++.++++|++-.|
T Consensus 149 qa~----dGVDfmTiH~Gi-------~~~~~~~~~~~~R~~gi 180 (423)
T TIGR00190 149 QAK----DGVDFMTIHAGV-------LLEYVERLKRSGRITGI 180 (423)
T ss_pred HHH----hCCCEEEEccch-------hHHHHHHHHhCCCccCe
Confidence 776 357889999852 46778888988865433
No 326
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=26.39 E-value=4.9e+02 Score=23.53 Aligned_cols=90 Identities=11% Similarity=0.017 Sum_probs=53.4
Q ss_pred ccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhc-CCceEEeeecCccccc-hhhhHHHHHHHh
Q 025500 126 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV-HPITAVQMEWSLWTRD-IEEEIIPLCREL 203 (252)
Q Consensus 126 iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~-~~~~l~~~~~~~ 203 (252)
=|-+++..+.. ......+..+...+.++-.-+...+.+.+++++.. ....++..+-|+.-.- ...++.+.|+++
T Consensus 92 Gd~Il~~~~~y----~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~i~~~tklV~lesP~NPtG~v~dl~~I~~la~~~ 167 (388)
T PRK08861 92 DDLIVAPHDCY----GGTYRLFNTRANKGDFKVQFVDQSDAAALDAALAKKPKLILLETPSNPLVRVVDIAELCQKAKAV 167 (388)
T ss_pred CCEEEEcCCch----HHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCcccCHHHHHHHHHHc
Confidence 46666654432 23344444444444455555555677778777642 3344444455553322 227899999999
Q ss_pred CCeEEecccCccccCC
Q 025500 204 GIGIVPYSPLGRGFFG 219 (252)
Q Consensus 204 gi~v~a~spl~~G~L~ 219 (252)
|+.++.=..++.|.+.
T Consensus 168 gi~vIvDea~~~~~~~ 183 (388)
T PRK08861 168 GALVAVDNTFLTPVLQ 183 (388)
T ss_pred CCEEEEECCccccccC
Confidence 9999988888877543
No 327
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=26.37 E-value=2e+02 Score=23.11 Aligned_cols=66 Identities=20% Similarity=0.326 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHcCCc---cEEEccCCCHHHHHHHhhcCCceEEeeecCccc----cc---hhhhHHHHHHHhCCeEEecc
Q 025500 142 ETIGEMKKLVEEGKI---KYIGLSEASPGTIRRAHAVHPITAVQMEWSLWT----RD---IEEEIIPLCRELGIGIVPYS 211 (252)
Q Consensus 142 ~~~~~L~~l~~~G~i---r~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~----~~---~~~~l~~~~~~~gi~v~a~s 211 (252)
...+.++.+++.|.- ..+|....+.+.+.. .+++.+-+..+... .. .-..++..|+++|+.+++-.
T Consensus 135 ~~~~~l~~l~~~G~~i~ld~~g~~~~~~~~l~~----l~~~~ikld~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g 210 (236)
T PF00563_consen 135 ELLENLRRLRSLGFRIALDDFGSGSSSLEYLAS----LPPDYIKLDGSLVRDLSDEEAQSLLQSLINLAKSLGIKVIAEG 210 (236)
T ss_dssp HHHHHHHHHHHCT-EEEEEEETSTCGCHHHHHH----HCGSEEEEEHHGHTTTTSHHHHHHHHHHHHHHHHTT-EEEEEC
T ss_pred HHHHHHHHHHhcCceeEeeeccCCcchhhhhhh----cccccceeecccccccchhhHHHHHHHHHHHhhccccccceee
Confidence 445889999998862 222333334444333 35667766655542 11 12778899999999999754
No 328
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=26.36 E-value=4.7e+02 Score=23.38 Aligned_cols=25 Identities=8% Similarity=0.210 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEeCcC
Q 025500 38 VSEEDGISMIKHAFSKGITFFDTAD 62 (252)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta~ 62 (252)
.+.++..++.+..-+.||..|+...
T Consensus 19 ~s~~~k~~ia~~L~~~Gv~~IEvG~ 43 (363)
T TIGR02090 19 LTVEQKVEIARKLDELGVDVIEAGF 43 (363)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 3789999999999999999999753
No 329
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=26.26 E-value=5.5e+02 Score=24.06 Aligned_cols=107 Identities=8% Similarity=0.057 Sum_probs=58.0
Q ss_pred cCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcC-CccEEEccC----C--CHHHHHHHhhc
Q 025500 103 VKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSE----A--SPGTIRRAHAV 175 (252)
Q Consensus 103 ~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G-~ir~iGvs~----~--~~~~l~~~~~~ 175 (252)
+..+++.+.+.++...++.|+.++ .+...+...+.+.+.+-++++++.| .-..++++. . +.+.++.+.+
T Consensus 220 R~rs~e~Vv~Ei~~l~~~~gv~~~---~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~- 295 (497)
T TIGR02026 220 RHRDPKKFVDEIEWLVRTHGVGFF---ILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRR- 295 (497)
T ss_pred ecCCHHHHHHHHHHHHHHcCCCEE---EEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHH-
Confidence 445789999999999998887653 3332222233445566677778776 323344332 1 3344444433
Q ss_pred CCceEEeeecCc--------ccc----chhhhHHHHHHHhCCeEEecccC
Q 025500 176 HPITAVQMEWSL--------WTR----DIEEEIIPLCRELGIGIVPYSPL 213 (252)
Q Consensus 176 ~~~~~~q~~~~~--------~~~----~~~~~l~~~~~~~gi~v~a~spl 213 (252)
..+..+++-+-- +.. ....+.++.|+++||.+.+.--+
T Consensus 296 aG~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~ 345 (497)
T TIGR02026 296 AGLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFIT 345 (497)
T ss_pred hCCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEE
Confidence 223233331111 111 11256788889999887544333
No 330
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=26.24 E-value=50 Score=29.70 Aligned_cols=172 Identities=18% Similarity=0.124 Sum_probs=78.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHH---HHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLL---GKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCE 115 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~i---g~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (252)
+.++..+.|+.|.++|++.+-|+=+...+..+..+ .+.++......+.|..-+.+..... ...+.+. +
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~~----lg~~~~d----l- 82 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLKK----LGISYDD----L- 82 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE-CCHHHT----TT-BTTB----T-
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHH----cCCCHHH----H-
Confidence 57899999999999999999999777532222222 2222223445555555443321000 0001100 1
Q ss_pred HHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhcCC-ceEEeeecCccccch--
Q 025500 116 ASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHP-ITAVQMEWSLWTRDI-- 192 (252)
Q Consensus 116 ~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~-~~~~q~~~~~~~~~~-- 192 (252)
..+..||++. +=+ |..-. .+.+.+|-++|.--.+=.|+.+.+.++++.+..+ ++-+..-.|.+.+..
T Consensus 83 ~~~~~lGi~~---lRl---D~Gf~----~~~ia~ls~ng~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HNfYPr~~TG 152 (357)
T PF05913_consen 83 SFFKELGIDG---LRL---DYGFS----GEEIAKLSKNGIKIELNASTITEEELDELIKYGANFSNIIACHNFYPRPYTG 152 (357)
T ss_dssp HHHHHHT-SE---EEE---SSS-S----CHHHHHHTTT-SEEEEETTT--CCHHHHHCCTT--GGGEEEE---B-STT-S
T ss_pred HHHHHcCCCE---EEE---CCCCC----HHHHHHHHhCCCEEEEECCCCChHHHHHHHHhcCCHHHeEEEecccCCCCCC
Confidence 1244455432 222 22222 2334455555776677778877788888877642 433333444444431
Q ss_pred -----hhhHHHHHHHhCCeEEecccCccccCCCCCCCCCCCCCc
Q 025500 193 -----EEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPADS 231 (252)
Q Consensus 193 -----~~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~ 231 (252)
..+.=...+++|+.+.|+-|-.. .+.|+ ....+|.-+
T Consensus 153 Ls~~~f~~~n~~~k~~gi~~~AFI~g~~-~~rGP-l~~GLPTlE 194 (357)
T PF05913_consen 153 LSEEFFIEKNQLLKEYGIKTAAFIPGDE-NKRGP-LYEGLPTLE 194 (357)
T ss_dssp B-HHHHHHHHHHHHHTT-EEEEEE--SS-S-BTT-T-S--BSBG
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEecCCC-cccCC-ccCCCCccH
Confidence 13444567799999999998773 33343 333444433
No 331
>PLN02509 cystathionine beta-lyase
Probab=26.21 E-value=3.1e+02 Score=25.58 Aligned_cols=56 Identities=5% Similarity=0.009 Sum_probs=39.0
Q ss_pred CCCHHHHHHHhhc-CCceEEeeecCccccchh-hhHHHHHHHhCCeEEecccCccccC
Q 025500 163 EASPGTIRRAHAV-HPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFF 218 (252)
Q Consensus 163 ~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~~-~~l~~~~~~~gi~v~a~spl~~G~L 218 (252)
..+.+.+++++.. ....++..+.|+.-.... ..+.+.|+++|+.++.=..++.|.+
T Consensus 204 ~~d~e~l~~ai~~~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~ 261 (464)
T PLN02509 204 TTNLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVL 261 (464)
T ss_pred CCCHHHHHHhCCcCCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCcccccc
Confidence 3456777776642 334455566666554333 7899999999999999998887765
No 332
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=26.13 E-value=1.6e+02 Score=21.88 Aligned_cols=64 Identities=11% Similarity=0.060 Sum_probs=38.5
Q ss_pred cCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHh
Q 025500 103 VKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAH 173 (252)
Q Consensus 103 ~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~ 173 (252)
++.+.+.+.+.+++.|++.+++.-++-.+-..+...+-....+.-+++ . +-+-.|+.+.|....
T Consensus 10 r~~~~~~i~~ai~~~l~~~~~~~~~i~~iasi~~K~~E~~l~~~A~~l----~---~~~~~~~~eeL~~~~ 73 (121)
T PF01890_consen 10 RGAPAEEIEEAIEQALAEAGLSPRSIAAIASIDIKADEPGLLELAEEL----G---IPLRFFSAEELNAVE 73 (121)
T ss_dssp SS--HHHHHHHHHHHHHHCT--GGGEEEEEESSSSS--HHHHHHHHHC----T---SEEEEE-HHHHHCHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCChhhccEEEeccccCCCHHHHHHHHHh----C---CCeEEECHHHHhcCC
Confidence 346799999999999999999888888888887655433333332222 2 334445667776554
No 333
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=26.04 E-value=1.7e+02 Score=25.59 Aligned_cols=95 Identities=14% Similarity=0.126 Sum_probs=53.2
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEccCCCCC----CCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHH--HhhcCCce
Q 025500 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTS----VPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRR--AHAVHPIT 179 (252)
Q Consensus 106 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~----~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~--~~~~~~~~ 179 (252)
..+.+.+.+.+.+++.|+|++=++.+-.-... ....+.+++|++..+++.-. + ++..+-. ++. ..
T Consensus 130 ~~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~-~-----~aS~~YA~AAl~-~g-- 200 (295)
T PF07994_consen 130 QVEQIREDIRDFKKENGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPE-I-----SASMLYAYAALE-AG-- 200 (295)
T ss_dssp HHHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TT-H-----HHHHHHHHHHHH-TT--
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCc-C-----ChHHHHHHHHHH-CC--
Confidence 35678899999999999986666655544331 12235688888888765532 1 1222211 122 11
Q ss_pred EEeeecCccccchhhhHHHHHHHhCCeEEe
Q 025500 180 AVQMEWSLWTRDIEEEIIPLCRELGIGIVP 209 (252)
Q Consensus 180 ~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a 209 (252)
+-.+++.+-..-..+.+.+.|+++|+.+..
T Consensus 201 ~~fvN~tP~~~a~~P~l~ela~~~gvpi~G 230 (295)
T PF07994_consen 201 VPFVNGTPSNIADDPALVELAEEKGVPIAG 230 (295)
T ss_dssp EEEEE-SSSTTTTSHHHHHHHHHHTEEEEE
T ss_pred CCeEeccCccccCCHHHHHHHHHcCCCeec
Confidence 222344443332236899999999998774
No 334
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=25.72 E-value=1.7e+02 Score=22.18 Aligned_cols=54 Identities=22% Similarity=0.192 Sum_probs=35.5
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccC
Q 025500 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE 163 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~ 163 (252)
.+.+.+...+++..+.- -+.-.+=..|...+...+.+.|..+++.| +..|++.+
T Consensus 81 v~~~~L~~~L~~~~~~~----~~~~V~I~aD~~~~~~~vv~vmd~l~~aG-~~~v~l~t 134 (141)
T PRK11267 81 VTDETMITALDALTEGK----KDTTIFFRADKTVDYETLMKVMDTLHQAG-YLKIGLVG 134 (141)
T ss_pred ccHHHHHHHHHHHHhcC----CCceEEEEcCCCCCHHHHHHHHHHHHHcC-CCeEEEEe
Confidence 45566666666554432 23323333567778999999999999999 45588765
No 335
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.69 E-value=3.8e+02 Score=22.07 Aligned_cols=86 Identities=10% Similarity=0.112 Sum_probs=50.5
Q ss_pred ChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccC-CCHHHHHHHhhcC-CceEEee
Q 025500 106 APDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE-ASPGTIRRAHAVH-PITAVQM 183 (252)
Q Consensus 106 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~-~~~~~q~ 183 (252)
+++...+ +-+.|..-|++.+.+-+ -.| +..+.+++++++.-=..||..+ .+.++.+.+.+.+ .|-
T Consensus 25 ~~~~a~~-i~~al~~~Gi~~iEitl-~~~-------~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~Fi---- 91 (212)
T PRK05718 25 KLEDAVP-LAKALVAGGLPVLEVTL-RTP-------AALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFI---- 91 (212)
T ss_pred CHHHHHH-HHHHHHHcCCCEEEEec-CCc-------cHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEE----
Confidence 4555443 44556666776666652 111 3456666666553335688877 4557777777653 232
Q ss_pred ecCccccchhhhHHHHHHHhCCeEE
Q 025500 184 EWSLWTRDIEEEIIPLCRELGIGIV 208 (252)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~~gi~v~ 208 (252)
.++. ...++++.|++++|.++
T Consensus 92 -vsP~---~~~~vi~~a~~~~i~~i 112 (212)
T PRK05718 92 -VSPG---LTPPLLKAAQEGPIPLI 112 (212)
T ss_pred -ECCC---CCHHHHHHHHHcCCCEe
Confidence 1221 22588888888888877
No 336
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=25.68 E-value=5.5e+02 Score=23.89 Aligned_cols=25 Identities=8% Similarity=0.179 Sum_probs=20.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEeCc
Q 025500 37 PVSEEDGISMIKHAFSKGITFFDTA 61 (252)
Q Consensus 37 ~~~~~~~~~~l~~A~~~Gin~~Dta 61 (252)
++..++..+++...-++|+..|+..
T Consensus 22 ~~~t~dkl~ia~~Ld~~Gv~~IE~~ 46 (448)
T PRK12331 22 RMTTEEMLPILEKLDNAGYHSLEMW 46 (448)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEec
Confidence 3477888999999889999999974
No 337
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=25.57 E-value=2.3e+02 Score=25.86 Aligned_cols=74 Identities=11% Similarity=0.012 Sum_probs=57.4
Q ss_pred HHHHHHHHHHcCCccEEEccCCCHHHHHHHhhcCCceEEeeecCccccchhhhHHHHHHHhCCeEEecccCccc
Q 025500 143 TIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRG 216 (252)
Q Consensus 143 ~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G 216 (252)
.-+.+..|.+.|.--+.|+-+-+-...+.+....-..+.+-+|++.......+..+..++..+-|.+--||+.+
T Consensus 279 ~~~~~~~L~~~g~~v~~g~l~~~d~d~~~a~~l~~~~~~~~pf~~i~~~~~~~a~~~~~~~~~vi~~~~~~g~~ 352 (402)
T PRK09536 279 AARAVSRLVAAGASVSVGPVPEGDTAAETAARVGCEAVTVPPFKPIEDSTRAEATDLIIAADAVVAAGVAAAAR 352 (402)
T ss_pred HHHHHHHHHHCCCeEEEecCcCcchhHHHHHHcCCCEEeeCCCCCCCHHHHHHHHHHHHhCCEEEECCCccCCC
Confidence 45678889999999999999866555555544445556677888888766678888899999999988888755
No 338
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=25.56 E-value=4.4e+02 Score=22.74 Aligned_cols=63 Identities=16% Similarity=0.078 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHcCCCcccEEEccCCCCCCC---HHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhh
Q 025500 109 YVRSCCEASLKRLDVDYIDLYYQHRVDTSVP---IEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHA 174 (252)
Q Consensus 109 ~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~---~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~ 174 (252)
..++.+.-.+.-++ ..+++++..|....+ ..++|+.|.++.++|. +.|=+|+|..+.++.+.+
T Consensus 140 G~kqrl~ia~aL~~--~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~-~tvlissH~l~e~~~~~d 205 (293)
T COG1131 140 GMKQRLSIALALLH--DPELLILDEPTSGLDPESRREIWELLRELAKEGG-VTILLSTHILEEAEELCD 205 (293)
T ss_pred HHHHHHHHHHHHhc--CCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCC-cEEEEeCCcHHHHHHhCC
Confidence 34555555555554 368999998877665 3578999999999997 789999999998888744
No 339
>PRK04311 selenocysteine synthase; Provisional
Probab=25.54 E-value=3.8e+02 Score=25.01 Aligned_cols=67 Identities=15% Similarity=0.191 Sum_probs=40.1
Q ss_pred HHHcC-CccEEEccC-CCHHHHHHHhhc-CCceEEeeecCc----c-ccchhhhHHHHHHHhCCeEEecccCccccC
Q 025500 150 LVEEG-KIKYIGLSE-ASPGTIRRAHAV-HPITAVQMEWSL----W-TRDIEEEIIPLCRELGIGIVPYSPLGRGFF 218 (252)
Q Consensus 150 l~~~G-~ir~iGvs~-~~~~~l~~~~~~-~~~~~~q~~~~~----~-~~~~~~~l~~~~~~~gi~v~a~spl~~G~L 218 (252)
+...| +++.++..| .+.+.+++++.. ....++...-|+ + ....-.++.+.|+++|+.++.=. +.|.+
T Consensus 188 ~~~~G~~l~~v~~~~~t~~~dle~aI~~~TklV~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi~vivD~--gsG~l 262 (464)
T PRK04311 188 MRQAGARLVEVGTTNRTHLRDYEQAINENTALLLKVHTSNYRIEGFTKEVSLAELAALGKEHGLPVVYDL--GSGSL 262 (464)
T ss_pred HHHCCcEEEEECCCCCCCHHHHHHhcCccCeEEEEEcCCCccccccCCcCCHHHHHHHHHHcCCeEEEEC--CCccc
Confidence 34455 577788776 446677777643 222222223332 1 11123789999999999999876 35555
No 340
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=25.19 E-value=2.2e+02 Score=23.92 Aligned_cols=56 Identities=18% Similarity=0.361 Sum_probs=36.7
Q ss_pred CHHHHHHHhhcCCceEEee----ecCccccch--h-hhHHHHHHHhCCeEEecccCccccCCC
Q 025500 165 SPGTIRRAHAVHPITAVQM----EWSLWTRDI--E-EEIIPLCRELGIGIVPYSPLGRGFFGG 220 (252)
Q Consensus 165 ~~~~l~~~~~~~~~~~~q~----~~~~~~~~~--~-~~l~~~~~~~gi~v~a~spl~~G~L~~ 220 (252)
++.+++.+.+...+.++.+ +||.|.... + .+++++++..|-.-+...|+.-|-.-+
T Consensus 50 p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~~ 112 (272)
T COG4130 50 PAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSWPG 112 (272)
T ss_pred CHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCCCC
Confidence 3445555555544444333 567666542 2 789999999999999999998754333
No 341
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=25.17 E-value=3.4e+02 Score=25.98 Aligned_cols=74 Identities=23% Similarity=0.164 Sum_probs=50.4
Q ss_pred CCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhcCCceEE---eeecCccccchhhhHHHHHHHhCCeEEecccC
Q 025500 137 SVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPITAV---QMEWSLWTRDIEEEIIPLCRELGIGIVPYSPL 213 (252)
Q Consensus 137 ~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~---q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl 213 (252)
..+..++.+.+.+.++..+|+.||+-.+....+..+++...+.++ |.-.++-.. -..++..-..|.-+..-.|+
T Consensus 409 ~id~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~lv~i~Q~~~~l~~~---~k~~e~~~~~g~i~~~dnp~ 485 (546)
T COG4626 409 LIDYAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKVVGIPQGFKKLSGA---IKTIERKLAEGVLVHGDNPL 485 (546)
T ss_pred ccCHHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCceeeccchhhhhCch---hHHHHHHHhcCcEEECCCcH
Confidence 345678899999999999999999999999988888776544433 333333222 34455555566665555555
No 342
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=25.10 E-value=4.4e+02 Score=22.56 Aligned_cols=130 Identities=13% Similarity=0.150 Sum_probs=70.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEeCcCCcCC----CcHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHH
Q 025500 37 PVSEEDGISMIKHAFSKGITFFDTADVYGQ----NANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRS 112 (252)
Q Consensus 37 ~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~----g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~ 112 (252)
.++.++..++++.+.+.|+..|.-+. |. ..-.+++.. ++...-.++.|+|... .+ .
T Consensus 39 ~ls~eei~~~i~~~~~~gi~~I~~tG--GEPll~~~l~~iv~~-l~~~g~~~v~i~TNG~----------------ll-~ 98 (302)
T TIGR02668 39 ELSPEEIERIVRVASEFGVRKVKITG--GEPLLRKDLIEIIRR-IKDYGIKDVSMTTNGI----------------LL-E 98 (302)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEC--cccccccCHHHHHHH-HHhCCCceEEEEcCch----------------HH-H
Confidence 36789999999999999998777431 10 011222222 2212112556655421 11 1
Q ss_pred HHHHHHHHcCCCcccEEEccCCCC--------CCCHHHHHHHHHHHHHcCC----ccEEEccCCCHHHHHHHhhc---CC
Q 025500 113 CCEASLKRLDVDYIDLYYQHRVDT--------SVPIEETIGEMKKLVEEGK----IKYIGLSEASPGTIRRAHAV---HP 177 (252)
Q Consensus 113 ~~~~sL~~Lg~d~iDl~~lh~~~~--------~~~~~~~~~~L~~l~~~G~----ir~iGvs~~~~~~l~~~~~~---~~ 177 (252)
..-..|.+.|++.+- +.++.+++ ....+.+++.++.+++.|. +..+.+.+.+.+.+.++.+. ..
T Consensus 99 ~~~~~l~~~g~~~v~-iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v~~~g~n~~ei~~~~~~~~~~g 177 (302)
T TIGR02668 99 KLAKKLKEAGLDRVN-VSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMVVLKGINDNEIPDMVEFAAEGG 177 (302)
T ss_pred HHHHHHHHCCCCEEE-EEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 233446666766543 33444432 2347789999999999984 23444554666666555442 33
Q ss_pred ceEEeeecCc
Q 025500 178 ITAVQMEWSL 187 (252)
Q Consensus 178 ~~~~q~~~~~ 187 (252)
+.+.-+++.+
T Consensus 178 ~~~~~ie~~p 187 (302)
T TIGR02668 178 AILQLIELMP 187 (302)
T ss_pred CEEEEEEEeE
Confidence 4443344444
No 343
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.08 E-value=4.2e+02 Score=22.30 Aligned_cols=148 Identities=13% Similarity=0.103 Sum_probs=82.8
Q ss_pred ceecCCCCccccceeecccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhc-----CCCCC
Q 025500 10 RVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ-----LPREK 84 (252)
Q Consensus 10 ~~~lg~~g~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~-----~~R~~ 84 (252)
.++|| .|+-++.+.+= -++.+.- ..--+.+++.-+++.|.+.-=.+ +|..+..++++ .+=.+
T Consensus 18 DkrLG-GGiP~GsL~lI----EGd~~tG-KSvLsqr~~YG~L~~g~~v~yvs-------Te~T~refi~qm~sl~ydv~~ 84 (235)
T COG2874 18 DKRLG-GGIPVGSLILI----EGDNGTG-KSVLSQRFAYGFLMNGYRVTYVS-------TELTVREFIKQMESLSYDVSD 84 (235)
T ss_pred Hhhcc-CCCccCeEEEE----ECCCCcc-HHHHHHHHHHHHHhCCceEEEEE-------echhHHHHHHHHHhcCCCchH
Confidence 35674 57877776651 1112221 23455777888888898754322 57777777775 22223
Q ss_pred EEEEeccCccCCCCcccccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCC------CCHHHHHHHHHHHHHcCCccE
Q 025500 85 IQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS------VPIEETIGEMKKLVEEGKIKY 158 (252)
Q Consensus 85 ~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~------~~~~~~~~~L~~l~~~G~ir~ 158 (252)
.++.-++.....+. ....+.++..+.-++..++....-.-|++.+...+.- ..+.+.+..+..+.+.||+--
T Consensus 85 ~~l~G~l~~~~~~~--~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIi 162 (235)
T COG2874 85 FLLSGRLLFFPVNL--EPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVII 162 (235)
T ss_pred HHhcceeEEEEecc--cccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEE
Confidence 23322222211000 0112446666666777777777767788888776431 123456677777888999887
Q ss_pred EEccC--CCHHHHHHH
Q 025500 159 IGLSE--ASPGTIRRA 172 (252)
Q Consensus 159 iGvs~--~~~~~l~~~ 172 (252)
+=+.. ++.+.+-++
T Consensus 163 lTvhp~~l~e~~~~ri 178 (235)
T COG2874 163 LTVHPSALDEDVLTRI 178 (235)
T ss_pred EEeChhhcCHHHHHHH
Confidence 77654 333444333
No 344
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=25.01 E-value=4e+02 Score=23.79 Aligned_cols=54 Identities=9% Similarity=-0.026 Sum_probs=34.1
Q ss_pred CCHHHHHHHhhc-CCceEEeeecCccccc-hhhhHHHHHHHhCCeEEecccCcccc
Q 025500 164 ASPGTIRRAHAV-HPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRGF 217 (252)
Q Consensus 164 ~~~~~l~~~~~~-~~~~~~q~~~~~~~~~-~~~~l~~~~~~~gi~v~a~spl~~G~ 217 (252)
.+.+.+++++.. ....++..+.|+.-.. ..+++.+.|+++|+.++.=..++.+.
T Consensus 127 ~d~~~l~~~i~~~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~~ 182 (380)
T TIGR01325 127 TDLNAWEAAVKPNTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFATPV 182 (380)
T ss_pred CCHHHHHHhcCCCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccc
Confidence 356667666532 3344444555554332 23789999999999999777766543
No 345
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.86 E-value=4.1e+02 Score=22.13 Aligned_cols=50 Identities=12% Similarity=0.140 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhcC--CCCCEEEEec
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQL--PREKIQVATK 90 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~~--~R~~~~i~tK 90 (252)
+.+++.++.+..++.|+++++.+-.-. .+.+.+.+..+.. .-.++.|-.-
T Consensus 25 ~~~~a~~~~~al~~gGi~~iEiT~~tp--~a~~~i~~l~~~~~~~~p~~~vGaG 76 (222)
T PRK07114 25 DVEVAKKVIKACYDGGARVFEFTNRGD--FAHEVFAELVKYAAKELPGMILGVG 76 (222)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCC--cHHHHHHHHHHHHHhhCCCeEEeeE
Confidence 789999999999999999999775443 2666665443321 1125665443
No 346
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=24.77 E-value=3.4e+02 Score=22.79 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCC
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADV 63 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~ 63 (252)
+.+...++.++|-..|-+|+|.|..
T Consensus 25 d~~~V~~i~~AA~~ggAt~vDIAad 49 (242)
T PF04481_consen 25 DAESVAAIVKAAEIGGATFVDIAAD 49 (242)
T ss_pred CHHHHHHHHHHHHccCCceEEecCC
Confidence 7899999999999999999998863
No 347
>PRK08084 DNA replication initiation factor; Provisional
Probab=24.69 E-value=1.3e+02 Score=24.94 Aligned_cols=45 Identities=9% Similarity=0.220 Sum_probs=32.3
Q ss_pred cccEEEccCCCCCC---C-HHHHHHHHHHHHHcCCccEEEccCCCHHHH
Q 025500 125 YIDLYYQHRVDTSV---P-IEETIGEMKKLVEEGKIKYIGLSEASPGTI 169 (252)
Q Consensus 125 ~iDl~~lh~~~~~~---~-~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l 169 (252)
..|++++...+... . -++..+.+..+++.|+++-|+.|+..+..+
T Consensus 97 ~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l 145 (235)
T PRK08084 97 QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQL 145 (235)
T ss_pred hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHc
Confidence 35888887664421 1 234567888899999999999999777663
No 348
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=24.69 E-value=3.2e+02 Score=22.65 Aligned_cols=71 Identities=11% Similarity=0.183 Sum_probs=41.5
Q ss_pred HHHHHHHH-HHHcCCccEEEccCCCHHHHHHHhhcCC-c----------------------------eEEeeecCccc-c
Q 025500 142 ETIGEMKK-LVEEGKIKYIGLSEASPGTIRRAHAVHP-I----------------------------TAVQMEWSLWT-R 190 (252)
Q Consensus 142 ~~~~~L~~-l~~~G~ir~iGvs~~~~~~l~~~~~~~~-~----------------------------~~~q~~~~~~~-~ 190 (252)
+.++.+.+ +++.|.-+.+=++.|+.+.+.++.+..| + ..+.++++... .
T Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (249)
T cd08561 119 AAAAALADLIERYGAQDRVLVASFSDRVLRRFRRLCPRVATSAGEGEVAAFVLASRLGLGSLYSPPYDALQIPVRYGGVP 198 (249)
T ss_pred hHHHHHHHHHHHcCCCCcEEEEECCHHHHHHHHHHCCCcceeccHHHHHHHHHHhhcccccccCCCCcEEEcCcccCCee
Confidence 34443333 3344666778888888888777765422 1 11111221100 1
Q ss_pred chhhhHHHHHHHhCCeEEeccc
Q 025500 191 DIEEEIIPLCRELGIGIVPYSP 212 (252)
Q Consensus 191 ~~~~~l~~~~~~~gi~v~a~sp 212 (252)
....++++.|+++|+.|.+|..
T Consensus 199 ~~~~~~v~~~~~~G~~v~vWTV 220 (249)
T cd08561 199 LVTPRFVRAAHAAGLEVHVWTV 220 (249)
T ss_pred cCCHHHHHHHHHCCCEEEEEec
Confidence 1126899999999999999984
No 349
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=24.60 E-value=32 Score=31.95 Aligned_cols=53 Identities=19% Similarity=0.340 Sum_probs=33.3
Q ss_pred CCccEEEccCCCHHHHHHHhhcCC-ceEEeeecCccccchhhhHHHHHHHhCCe
Q 025500 154 GKIKYIGLSEASPGTIRRAHAVHP-ITAVQMEWSLWTRDIEEEIIPLCRELGIG 206 (252)
Q Consensus 154 G~ir~iGvs~~~~~~l~~~~~~~~-~~~~q~~~~~~~~~~~~~l~~~~~~~gi~ 206 (252)
+.+|.+|+..++.+.+.++..... -+..+....++......++++.|++.||.
T Consensus 264 ~~Ar~fG~ll~d~d~i~eaa~~~~~~~~y~~~~~~~ldp~dp~v~~~A~~~gi~ 317 (492)
T TIGR01660 264 GRIRYLGVLLYDADKIEEAASTENEKDLYHRQLDVFLDPNDPEVIAQAKKDGIP 317 (492)
T ss_pred hhhhhhhhhccCcHHHHHHHhcccchhHHHHhhceecCCCCHHHHHHHHHcCCC
Confidence 567888998888888877765521 23333333443332236788888888875
No 350
>PRK04527 argininosuccinate synthase; Provisional
Probab=24.59 E-value=3.9e+02 Score=24.47 Aligned_cols=74 Identities=11% Similarity=0.009 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHHHCCCC---EEeCcCCcCCCcHHHHHHHHHhc--CCCCCEEEEeccCccCCCCcccccCCChHHHHHH
Q 025500 39 SEEDGISMIKHAFSKGIT---FFDTADVYGQNANEVLLGKALKQ--LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSC 113 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin---~~Dta~~Yg~g~se~~ig~~l~~--~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~ 113 (252)
+.++..++-..|.+.|+. .+|+...| .|.++..+++. ......-+.+ .++..+-+.
T Consensus 40 ~~~El~~a~~~A~~lG~~~~~viD~~eef----~e~vi~p~i~aNa~y~G~yPl~~---------------~nR~~~~~~ 100 (400)
T PRK04527 40 DAEERDFIEKRAAELGAASHVTVDGGPAI----WEGFVKPLVWAGEGYQGQYPLLV---------------SDRYLIVDA 100 (400)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEecCHHHH----HHHHHHHHHhcchhhcCCCCCcc---------------ccHHHHHHH
Confidence 356777777888888985 66766655 56677766652 1111111111 134445556
Q ss_pred HHHHHHHcCCCcccEEEccCCC
Q 025500 114 CEASLKRLDVDYIDLYYQHRVD 135 (252)
Q Consensus 114 ~~~sL~~Lg~d~iDl~~lh~~~ 135 (252)
+.+..+++|.++ ..|-..
T Consensus 101 l~e~A~~~G~~~----IA~G~t 118 (400)
T PRK04527 101 ALKRAEELGTRI----IAHGCT 118 (400)
T ss_pred HHHHHHHCCCCE----EEecCc
Confidence 666677788764 456553
No 351
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=24.42 E-value=4.1e+02 Score=22.45 Aligned_cols=84 Identities=10% Similarity=-0.029 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHHHHHc
Q 025500 42 DGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRL 121 (252)
Q Consensus 42 ~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L 121 (252)
...+.++.|-+.|++.++.++.+-. -.++..-++++...+..+.+-+-++..... .....+++...+.+++.|+.
T Consensus 72 ~~~~Yl~~~k~lGf~~IEiS~G~~~-i~~~~~~rlI~~~~~~g~~v~~EvG~K~~~---~~~~~~~~~~i~~~~~~LeA- 146 (237)
T TIGR03849 72 KFDEYLNECDELGFEAVEISDGSME-ISLEERCNLIERAKDNGFMVLSEVGKKSPE---KDSELTPDDRIKLINKDLEA- 146 (237)
T ss_pred hHHHHHHHHHHcCCCEEEEcCCccC-CCHHHHHHHHHHHHhCCCeEeccccccCCc---ccccCCHHHHHHHHHHHHHC-
Confidence 3344455666666776666665432 344444455555555666666666554321 11234556666666555532
Q ss_pred CCCcccEEEccC
Q 025500 122 DVDYIDLYYQHR 133 (252)
Q Consensus 122 g~d~iDl~~lh~ 133 (252)
| .|.+++..
T Consensus 147 G---A~~ViiEa 155 (237)
T TIGR03849 147 G---ADYVIIEG 155 (237)
T ss_pred C---CcEEEEee
Confidence 3 35566655
No 352
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=24.40 E-value=4.2e+02 Score=22.12 Aligned_cols=164 Identities=15% Similarity=0.171 Sum_probs=105.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASL 118 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 118 (252)
+..+....+...+..++.+....-.-| .+.+.| +.+. ....+..+.|.+.-.. ....+.+.+...+.+.+
T Consensus 11 PR~Dv~p~l~~~l~~~v~i~e~G~LDg--ls~~eI-~~~a-P~~ge~vLvTrL~DG~------~V~ls~~~v~~~lq~~i 80 (221)
T PF07302_consen 11 PRTDVTPELTEILGEGVEIVEAGALDG--LSREEI-AALA-PEPGEYVLVTRLRDGT------QVVLSKKKVEPRLQACI 80 (221)
T ss_pred CCchhHHHHHHHcCCCceEEEeccCCC--CCHHHH-HHhC-CCCCCceeEEEeCCCC------EEEEEHHHHHHHHHHHH
Confidence 567788888888988888777554443 455555 6666 3445566777775332 33478999999999988
Q ss_pred HHcCCCcccEEEccCCCCC------CC---HHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhc---CCceEEeeecC
Q 025500 119 KRLDVDYIDLYYQHRVDTS------VP---IEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV---HPITAVQMEWS 186 (252)
Q Consensus 119 ~~Lg~d~iDl~~lh~~~~~------~~---~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~---~~~~~~q~~~~ 186 (252)
++|.-+-.|+.++=.-..- .. .+.++..+-...-.| +.+||-.-..+|+....++ ....+.-.-.|
T Consensus 81 ~~le~~G~d~illlCTG~F~~l~~~~~lleP~ril~~lV~al~~~--~~vGVivP~~eQ~~~~~~kW~~l~~~~~~a~as 158 (221)
T PF07302_consen 81 AQLEAQGYDVILLLCTGEFPGLTARNPLLEPDRILPPLVAALVGG--HQVGVIVPLPEQIAQQAEKWQPLGNPVVVAAAS 158 (221)
T ss_pred HHHHHCCCCEEEEeccCCCCCCCCCcceeehHHhHHHHHHHhcCC--CeEEEEecCHHHHHHHHHHHHhcCCCeEEEEeC
Confidence 8887776787777443221 11 234455555444455 7899988888888765443 23345555677
Q ss_pred ccccchhhhHHHHHH---HhCCeEEecccCcc
Q 025500 187 LWTRDIEEEIIPLCR---ELGIGIVPYSPLGR 215 (252)
Q Consensus 187 ~~~~~~~~~l~~~~~---~~gi~v~a~spl~~ 215 (252)
++..+. .++.+.++ ++|..++..--++.
T Consensus 159 Py~~~~-~~l~~Aa~~L~~~gadlIvLDCmGY 189 (221)
T PF07302_consen 159 PYEGDE-EELAAAARELAEQGADLIVLDCMGY 189 (221)
T ss_pred CCCCCH-HHHHHHHHHHHhcCCCEEEEECCCC
Confidence 775442 45555544 56888887766653
No 353
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=24.17 E-value=2.6e+02 Score=20.27 Aligned_cols=51 Identities=10% Similarity=0.091 Sum_probs=27.2
Q ss_pred ccCCCHHHHHHHhhcCCceEEeeecCccccchhhhHHHHHHHhCCeEEeccc
Q 025500 161 LSEASPGTIRRAHAVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSP 212 (252)
Q Consensus 161 vs~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~sp 212 (252)
.+..+.+.++.+.... ++++-+--.-.......++.++++++||++..+..
T Consensus 37 ~~~l~~e~l~~l~~~~-peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~m~T 87 (109)
T cd05560 37 FEDLTAAHFEALLALQ-PEVILLGTGERQRFPPPALLAPLLARGIGVEVMDT 87 (109)
T ss_pred cccCCHHHHHHHHhcC-CCEEEEecCCCCCcCCHHHHHHHHHcCCeEEEECH
Confidence 3344555666555432 34333311111111126788889999998887654
No 354
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=23.97 E-value=5.6e+02 Score=23.37 Aligned_cols=104 Identities=16% Similarity=0.189 Sum_probs=55.0
Q ss_pred CcCCCcHHHHHHHHHhc----CCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHHHHHcCC-----CcccEEEccC
Q 025500 63 VYGQNANEVLLGKALKQ----LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDV-----DYIDLYYQHR 133 (252)
Q Consensus 63 ~Yg~g~se~~ig~~l~~----~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~-----d~iDl~~lh~ 133 (252)
.|| .|+.+-+++++ .+.+=++|.|-... +-+-+.++...+++.. -.+.++.++.
T Consensus 62 V~G---g~~~L~~~i~~~~~~~~p~~I~v~~tC~~--------------~liGdDi~~v~~~~~~~~~~~~~~~vi~v~t 124 (428)
T cd01965 62 VFG---GEDNLIEALKNLLSRYKPDVIGVLTTCLT--------------ETIGDDVAGFIKEFRAEGPEPADFPVVYAST 124 (428)
T ss_pred eEC---cHHHHHHHHHHHHHhcCCCEEEEECCcch--------------hhcCCCHHHHHHHHHhhccCCCCCeEEEeeC
Confidence 455 46777777776 22333555554432 2233334444444432 1356788888
Q ss_pred CCCCCCH----HHHHHHHHH-H------HHcCCccEEEccCC---CHHHHHHHhhcCCceEEee
Q 025500 134 VDTSVPI----EETIGEMKK-L------VEEGKIKYIGLSEA---SPGTIRRAHAVHPITAVQM 183 (252)
Q Consensus 134 ~~~~~~~----~~~~~~L~~-l------~~~G~ir~iGvs~~---~~~~l~~~~~~~~~~~~q~ 183 (252)
|...... +.++++|-+ + ++.++|.-||-++. +.+.++++++...+.++.+
T Consensus 125 pgf~g~~~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~ 188 (428)
T cd01965 125 PSFKGSHETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPIIL 188 (428)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEEe
Confidence 8654332 233444332 2 23456888876654 4567778777655555443
No 355
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=23.97 E-value=68 Score=24.34 Aligned_cols=19 Identities=11% Similarity=0.174 Sum_probs=15.7
Q ss_pred HHHHHHHHHHCCCCEEeCc
Q 025500 43 GISMIKHAFSKGITFFDTA 61 (252)
Q Consensus 43 ~~~~l~~A~~~Gin~~Dta 61 (252)
....+..+++.|+|+||.-
T Consensus 30 q~~~i~~qL~~GvR~~dir 48 (135)
T smart00148 30 SVEGYIQALDHGCRCVELD 48 (135)
T ss_pred cHHHHHHHHHhCCCEEEEE
Confidence 3568888999999999953
No 356
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=23.92 E-value=5.7e+02 Score=23.46 Aligned_cols=61 Identities=11% Similarity=0.016 Sum_probs=37.0
Q ss_pred ccEEEccCCCHHHHHHHhhc-CCceEEeeecCccccc-hhhhHHHHHHHhCCeEEecccCccc
Q 025500 156 IKYIGLSEASPGTIRRAHAV-HPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRG 216 (252)
Q Consensus 156 ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~-~~~~l~~~~~~~gi~v~a~spl~~G 216 (252)
++-+-+...+.+.+++++.. ....++..+.|+.-.. ...++.+.|+++|+.++.=..++.+
T Consensus 129 v~v~~vd~~d~e~l~~ai~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~ 191 (431)
T PRK08248 129 ITVKFVDPSDPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASP 191 (431)
T ss_pred EEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCcc
Confidence 34444444567788777643 2333334344442222 1278999999999999977777644
No 357
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=23.91 E-value=5.3e+02 Score=23.07 Aligned_cols=177 Identities=8% Similarity=0.039 Sum_probs=87.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHH-HHHHHHHhcCCCCCEEEEeccCccCC-----CCcc---cc------
Q 025500 38 VSEEDGISMIKHAFSKGITFFDTADVYGQNANE-VLLGKALKQLPREKIQVATKFGIAGI-----GVAG---VI------ 102 (252)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se-~~ig~~l~~~~R~~~~i~tK~~~~~~-----~~~~---~~------ 102 (252)
.+.++..++++.--+.||..|+..-.. .+..| +.+.+..+..+..++..-...-.... ...+ ..
T Consensus 20 ~s~~~k~~ia~~L~~~Gv~~IEvG~p~-~~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~ 98 (365)
T TIGR02660 20 FTAAEKLAIARALDEAGVDELEVGIPA-MGEEERAVIRAIVALGLPARLMAWCRARDADIEAAARCGVDAVHISIPVSDL 98 (365)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCC-CCHHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCCcCEEEEEEccCHH
Confidence 378999999999999999999985221 12344 45544443333332222111100000 0000 00
Q ss_pred -----cCCChHHHHHHHHHHHH---HcCCCcccEEEccCCCC-CCCHHHHHHHHHHHHHcCCccEEEccC----CCHHHH
Q 025500 103 -----VKGAPDYVRSCCEASLK---RLDVDYIDLYYQHRVDT-SVPIEETIGEMKKLVEEGKIKYIGLSE----ASPGTI 169 (252)
Q Consensus 103 -----~~~~~~~i~~~~~~sL~---~Lg~d~iDl~~lh~~~~-~~~~~~~~~~L~~l~~~G~ir~iGvs~----~~~~~l 169 (252)
...+++.+.+.+.++.+ +.|. . +.+..++. ..+.+.+.+..+.+.+.| +..|.+++ .++.++
T Consensus 99 ~~~~~~~~s~~e~l~~~~~~i~~ak~~g~-~---v~~~~ed~~r~~~~~l~~~~~~~~~~G-a~~i~l~DT~G~~~P~~v 173 (365)
T TIGR02660 99 QIEAKLRKDRAWVLERLARLVSFARDRGL-F---VSVGGEDASRADPDFLVELAEVAAEAG-ADRFRFADTVGILDPFST 173 (365)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHHHHhCCC-E---EEEeecCCCCCCHHHHHHHHHHHHHcC-cCEEEEcccCCCCCHHHH
Confidence 11233443333333332 3443 1 22333333 234566677777777777 56677776 456665
Q ss_pred HHHhhcC--CceEEeeecCccccc-hhhhHHHHHHHhCCeEEecccCccccCCCC
Q 025500 170 RRAHAVH--PITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRGFFGGK 221 (252)
Q Consensus 170 ~~~~~~~--~~~~~q~~~~~~~~~-~~~~l~~~~~~~gi~v~a~spl~~G~L~~~ 221 (252)
.++.+.. .+. +.+.+|.-+.. ....-.-.|-+.|+..+--+-.+-|--+|.
T Consensus 174 ~~lv~~l~~~~~-v~l~~H~HNd~GlA~ANalaA~~aGa~~vd~tl~GiGeraGN 227 (365)
T TIGR02660 174 YELVRALRQAVD-LPLEMHAHNDLGMATANTLAAVRAGATHVNTTVNGLGERAGN 227 (365)
T ss_pred HHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEEeecccccccc
Confidence 5554331 111 23444443321 112222334588888888888877754444
No 358
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=23.85 E-value=2.4e+02 Score=23.34 Aligned_cols=58 Identities=22% Similarity=0.239 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHcCCccEEEccC-CCHHHHHHHhhcC-CceEEeeecCccccchhhhHHHHHHHhCCeEE
Q 025500 140 IEETIGEMKKLVEEGKIKYIGLSE-ASPGTIRRAHAVH-PITAVQMEWSLWTRDIEEEIIPLCRELGIGIV 208 (252)
Q Consensus 140 ~~~~~~~L~~l~~~G~ir~iGvs~-~~~~~l~~~~~~~-~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~ 208 (252)
..++++.+.+.+. =--||..+ .++++++++.+.+ +| -.++ ..+.++++.|+++||.++
T Consensus 51 a~e~I~~l~~~~p---~~lIGAGTVL~~~q~~~a~~aGa~f-----iVsP---~~~~ev~~~a~~~~ip~~ 110 (211)
T COG0800 51 ALEAIRALAKEFP---EALIGAGTVLNPEQARQAIAAGAQF-----IVSP---GLNPEVAKAANRYGIPYI 110 (211)
T ss_pred HHHHHHHHHHhCc---ccEEccccccCHHHHHHHHHcCCCE-----EECC---CCCHHHHHHHHhCCCccc
Confidence 3345555555444 22477776 6788888887763 33 2233 234789999999999766
No 359
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=23.69 E-value=5.1e+02 Score=22.84 Aligned_cols=103 Identities=14% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHC-CCCEEeCcCCcCCCcHHHHHHHHHhc----CCCCCEEEEeccCccCCCCcccccCCChHHHHHHH
Q 025500 40 EEDGISMIKHAFSK-GITFFDTADVYGQNANEVLLGKALKQ----LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (252)
Q Consensus 40 ~~~~~~~l~~A~~~-Gin~~Dta~~Yg~g~se~~ig~~l~~----~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 114 (252)
.++..++++...+. |++-|--+..=.--.....+.+.++. ..-..+.|.|+..... +..+.+.+
T Consensus 144 ~~~~~~~i~~i~~~~~i~eV~lsGGDPLl~~d~~L~~ll~~L~~i~~~~~IRi~tr~~~~~-----------P~rit~el 212 (331)
T TIGR00238 144 KKKWQKALDYIAEHPEIIEILISGGDPLMAKDHELEWLLKRLEEIPHLVRLRIGTRLPVVI-----------PQRITDEL 212 (331)
T ss_pred HHHHHHHHHHHHhCCCcCEEEEECCccccCCHHHHHHHHHHHHhcCCccEEEeecCCCccC-----------chhcCHHH
Q ss_pred HHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCC
Q 025500 115 EASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK 155 (252)
Q Consensus 115 ~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ 155 (252)
-+.|++.|...+.+...-.+.... +++.++++.|++.|.
T Consensus 213 ~~~L~~~~~~~~~vsh~nh~~Ei~--~~~~~ai~~L~~aGi 251 (331)
T TIGR00238 213 CELLASFELQLMLVTHINHCNEIT--EEFAEAMKKLRTVNV 251 (331)
T ss_pred HHHHHhcCCcEEEEccCCChHhCC--HHHHHHHHHHHHcCC
No 360
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=23.66 E-value=6e+02 Score=23.63 Aligned_cols=64 Identities=9% Similarity=0.145 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHcC---CCcccEEEccCCCCCCCHHHHHHHHHHHHHc--CCccEEEccCCCHHHHHHHhh
Q 025500 110 VRSCCEASLKRLD---VDYIDLYYQHRVDTSVPIEETIGEMKKLVEE--GKIKYIGLSEASPGTIRRAHA 174 (252)
Q Consensus 110 i~~~~~~sL~~Lg---~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~--G~ir~iGvs~~~~~~l~~~~~ 174 (252)
+..++..+|+.++ ..--|+++|-+-..... ++......+++++ -++.+|-+++++...+.++..
T Consensus 349 ~~~~l~~al~~~k~~~~~~adiv~ITDg~~~~~-~~~~~~v~e~~k~~~~rl~aV~I~~~~~~~l~~Isd 417 (437)
T COG2425 349 ITKALRSALEDLKSRELFKADIVVITDGEDERL-DDFLRKVKELKKRRNARLHAVLIGGYGKPGLMRISD 417 (437)
T ss_pred hHHHHHHHHHHhhcccccCCCEEEEeccHhhhh-hHHHHHHHHHHHHhhceEEEEEecCCCCcccceeee
Confidence 4556666666665 44479999976544443 5566666666643 468888889998777766654
No 361
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.64 E-value=5.4e+02 Score=23.06 Aligned_cols=88 Identities=10% Similarity=0.082 Sum_probs=56.2
Q ss_pred EEccCCCCC-----------CCHHHHHHHHHHHHHcC-C---ccEEEcc--CCCHHHHHHHhh---cCCceEEeeecCcc
Q 025500 129 YYQHRVDTS-----------VPIEETIGEMKKLVEEG-K---IKYIGLS--EASPGTIRRAHA---VHPITAVQMEWSLW 188 (252)
Q Consensus 129 ~~lh~~~~~-----------~~~~~~~~~L~~l~~~G-~---ir~iGvs--~~~~~~l~~~~~---~~~~~~~q~~~~~~ 188 (252)
+-+|.+++. .++++++++++++.+.+ + ++++=+. |.+.++++++.+ ..+..++-++||+.
T Consensus 223 iSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~ 302 (356)
T PRK14455 223 ISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPV 302 (356)
T ss_pred eccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcC
Confidence 667887642 24578999999887743 2 3445333 444455555543 34566777888886
Q ss_pred cc-----chh---hhHHHHHHHhCCeEEecccCccc
Q 025500 189 TR-----DIE---EEIIPLCRELGIGIVPYSPLGRG 216 (252)
Q Consensus 189 ~~-----~~~---~~l~~~~~~~gi~v~a~spl~~G 216 (252)
.. ... ..+.+.++++|+.+......+.-
T Consensus 303 ~~~ky~~ps~e~l~~f~~~L~~~gi~v~ir~~~g~d 338 (356)
T PRK14455 303 PERDYVRTPKEDIFAFEDTLKKNGVNCTIRREHGTD 338 (356)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCcc
Confidence 53 112 45666688999999888776543
No 362
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=23.60 E-value=4.5e+02 Score=22.16 Aligned_cols=118 Identities=14% Similarity=0.146 Sum_probs=61.7
Q ss_pred CHHHHHHHHHHHHHCC-CCEEeCcCCcCCCcHHHHHHHHHhc--CCCCCEEEEeccCccCCCCcccccCCChHHHHHHHH
Q 025500 39 SEEDGISMIKHAFSKG-ITFFDTADVYGQNANEVLLGKALKQ--LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCE 115 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~G-in~~Dta~~Yg~g~se~~ig~~l~~--~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (252)
++++-.++++.+++.| +.++|.--..+ ++.+.+.+.. ....++++|..-+... .+.+.+.+.++
T Consensus 93 ~~~~~~~ll~~~~~~~~~d~vDiEl~~~----~~~~~~l~~~~~~~~~kvI~S~H~f~~t---------P~~~~l~~~~~ 159 (253)
T PRK02412 93 SDEEYLALIKAVIKSGLPDYIDVELFSG----KDVVKEMVAFAHEHGVKVVLSYHDFEKT---------PPKEEIVERLR 159 (253)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEeccCC----hHHHHHHHHHHHHcCCEEEEeeCCCCCC---------cCHHHHHHHHH
Confidence 5677788899999999 89999754332 3344443332 2344566655433222 23455554444
Q ss_pred HHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcC-CccEEEccCCCHHHHHHH
Q 025500 116 ASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSEASPGTIRRA 172 (252)
Q Consensus 116 ~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G-~ir~iGvs~~~~~~l~~~ 172 (252)
-++++|.|.+-+... +....+...++....++++.+ .+.-|+++.-....+.++
T Consensus 160 -~~~~~gaDivKia~~--a~~~~D~~~ll~~~~~~~~~~~~~P~i~~~MG~~G~~SRi 214 (253)
T PRK02412 160 -KMESLGADIVKIAVM--PQSEQDVLTLLNATREMKELYADQPLITMSMGKLGRISRL 214 (253)
T ss_pred -HHHHhCCCEEEEEec--CCCHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCchHHHc
Confidence 466777655555544 222233444555555554432 244444444333333343
No 363
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=23.47 E-value=4.2e+02 Score=21.80 Aligned_cols=119 Identities=15% Similarity=0.102 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHH-HHCCCCEEeCcCCcCCCcHHHHHHHHHhc--CCCCCEEEEeccCccCCCCcccccCCChHHHHHHHH
Q 025500 39 SEEDGISMIKHA-FSKGITFFDTADVYGQNANEVLLGKALKQ--LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCE 115 (252)
Q Consensus 39 ~~~~~~~~l~~A-~~~Gin~~Dta~~Yg~g~se~~ig~~l~~--~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (252)
++++-.+++..+ ...|+.++|.--.+. ++.+.+.++. ..+.++++|..-+... .+.+.+... -
T Consensus 76 ~~~~~~~ll~~~~~~~~~d~vDiEl~~~----~~~~~~l~~~~~~~~~kvI~S~H~f~~t---------p~~~~l~~~-~ 141 (228)
T TIGR01093 76 NEEEYLEELKRAADSPGPDFVDIELFLP----DDAVKELINIAKKGGTKIIMSYHDFQKT---------PSWEEIVER-L 141 (228)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEEccCC----HHHHHHHHHHHHHCCCEEEEeccCCCCC---------CCHHHHHHH-H
Confidence 566677788887 567889999765543 3344333331 3556677766544222 234555543 3
Q ss_pred HHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHh
Q 025500 116 ASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAH 173 (252)
Q Consensus 116 ~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~ 173 (252)
+-++++|.|.+-+... +....+....++...++++...+.-|+++.-....+.+++
T Consensus 142 ~~~~~~gaDivKia~~--a~~~~D~~~ll~~~~~~~~~~~~p~i~~~MG~~G~~SRil 197 (228)
T TIGR01093 142 EKALSYGADIVKIAVM--ANSKEDVLTLLEITNKVDEHADVPLITMSMGDRGKISRVL 197 (228)
T ss_pred HHHHHhCCCEEEEEec--cCCHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCChhHhhc
Confidence 4456777665555444 2222334445555555544433445555544333444443
No 364
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=23.43 E-value=3.6e+02 Score=22.28 Aligned_cols=51 Identities=10% Similarity=0.129 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHcCCCccc--EEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCC
Q 025500 107 PDYVRSCCEASLKRLDVDYID--LYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS 165 (252)
Q Consensus 107 ~~~i~~~~~~sL~~Lg~d~iD--l~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~ 165 (252)
.+.+.+.+.+.+++-|.+.-| ++-+---+. .+.+..+.+.| ++++|++...
T Consensus 8 ~~~i~~~i~~~~~~~~~~~~~~~l~aV~K~~~-------~~~i~~l~~~G-~~~fg~~~~~ 60 (229)
T TIGR00044 8 LEDIKTKIEAANTHVNRNPSKVKLLAVSKTKP-------ASAIQIAYDAG-QRAFGENYVQ 60 (229)
T ss_pred HHHHHHHHHHHHHHcCCCcCCeEEEEEECCCC-------HHHHHHHHHcC-CccccEEcHH
Confidence 466777888888887754333 333322211 44445577777 7888887744
No 365
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=23.40 E-value=41 Score=23.35 Aligned_cols=36 Identities=25% Similarity=0.400 Sum_probs=28.5
Q ss_pred hhHHHHHHHhCCeEEecccCccccCCCCCCCCCCCCC
Q 025500 194 EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVENVPAD 230 (252)
Q Consensus 194 ~~l~~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~ 230 (252)
..+++.++++||.++-..+|+.-+. .-...+.+|+.
T Consensus 30 ~~I~~~A~e~~VPi~~~~~LAr~L~-~~~ig~~IP~~ 65 (82)
T TIGR00789 30 ERIIEIAKKHGIPIVEDPDLVDVLL-KLDLDDEIPEE 65 (82)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHH-hCCCCCccCHH
Confidence 7799999999999999999998776 33445556543
No 366
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=23.37 E-value=5.6e+02 Score=23.19 Aligned_cols=40 Identities=8% Similarity=0.113 Sum_probs=29.7
Q ss_pred ceeecccccCC----CCCCC-CCHHHHHHHHHHHHHCCCCEEeCc
Q 025500 22 KLGYGCMNLSG----GYSSP-VSEEDGISMIKHAFSKGITFFDTA 61 (252)
Q Consensus 22 ~lglG~~~~g~----~~~~~-~~~~~~~~~l~~A~~~Gin~~Dta 61 (252)
+.+||.|.+|+ .||.. .+.-...+.++.+-+.|+..+...
T Consensus 8 ~f~~~~w~~~~~~~~~~g~~~~~~~~~~e~i~~la~~GfdgVE~~ 52 (382)
T TIGR02631 8 RFTFGLWTVGWVGRDPFGDATRTALDPVEAVHKLAELGAYGVTFH 52 (382)
T ss_pred ceEEEeeccCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCEEEec
Confidence 68899998875 34443 234567788999999999988865
No 367
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=23.24 E-value=4.8e+02 Score=22.32 Aligned_cols=61 Identities=21% Similarity=0.304 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHH
Q 025500 107 PDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRA 172 (252)
Q Consensus 107 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~ 172 (252)
...+.+.+++.-+.+|. ...+.. .+...+.......++++. .-++..|-++..++..+...
T Consensus 48 ~~~~~~g~~~~a~~~g~--~~~~~~--~~~~~d~~~Q~~~i~~~i-a~~~daIiv~~~d~~~~~~~ 108 (322)
T COG1879 48 FQAVRKGAEAAAKKLGV--VVAVVI--ADAQNDVAKQIAQIEDLI-AQGVDAIIINPVDPDALTPA 108 (322)
T ss_pred HHHHHHHHHHHHHHcCC--cEEEEe--cccccChHHHHHHHHHHH-HcCCCEEEEcCCChhhhHHH
Confidence 55688889999999997 222222 233345667888888885 56788888887776554433
No 368
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=23.20 E-value=5.3e+02 Score=22.85 Aligned_cols=91 Identities=9% Similarity=-0.052 Sum_probs=50.0
Q ss_pred EEEEeccCccCCCCcccccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCC----C-CHHHHHHHHHHHHHcCCccEE
Q 025500 85 IQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS----V-PIEETIGEMKKLVEEGKIKYI 159 (252)
Q Consensus 85 ~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~----~-~~~~~~~~L~~l~~~G~ir~i 159 (252)
+-|..|+.......+ ..+.+...+ +-+.|++.|+|++++ |..... . .....++..+++++.-.+--+
T Consensus 208 ~~v~vRis~~d~~~~----G~~~~e~~~-i~~~l~~~gvD~i~v---s~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi 279 (337)
T PRK13523 208 GPLFVRISASDYHPG----GLTVQDYVQ-YAKWMKEQGVDLIDV---SSGAVVPARIDVYPGYQVPFAEHIREHANIATG 279 (337)
T ss_pred CCeEEEecccccCCC----CCCHHHHHH-HHHHHHHcCCCEEEe---CCCCCCCCCCCCCccccHHHHHHHHhhcCCcEE
Confidence 456667764321111 133433332 444556667655554 443210 1 011135666777877778888
Q ss_pred EccCC-CHHHHHHHhhcCCceEEee
Q 025500 160 GLSEA-SPGTIRRAHAVHPITAVQM 183 (252)
Q Consensus 160 Gvs~~-~~~~l~~~~~~~~~~~~q~ 183 (252)
++... +++..+++++....+.+.+
T Consensus 280 ~~G~i~~~~~a~~~l~~g~~D~V~~ 304 (337)
T PRK13523 280 AVGLITSGAQAEEILQNNRADLIFI 304 (337)
T ss_pred EeCCCCCHHHHHHHHHcCCCChHHh
Confidence 88884 6788888887766665544
No 369
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=22.82 E-value=2.7e+02 Score=19.41 Aligned_cols=66 Identities=9% Similarity=0.019 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEccCCCC------CCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHh
Q 025500 108 DYVRSCCEASLKRLDVDYIDLYYQHRVDT------SVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAH 173 (252)
Q Consensus 108 ~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~------~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~ 173 (252)
..-.+++++.++++|..-.++|+.--+-+ ..+.+.+....-.+...|.++.-=+--++++.+.+++
T Consensus 19 ~~R~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~~~G~v~~et~~a~~~~e~~~~~ 90 (91)
T PF08734_consen 19 PDRAEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIRSSGNVRTETLRAFPWDEFDEIV 90 (91)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHHcCCceEEEEEecCCHHHHHHHh
Confidence 44566788999999998888888855422 1234556677788888999988666678888877664
No 370
>COG2055 Malate/L-lactate dehydrogenases [Energy production and conversion]
Probab=22.71 E-value=5.7e+02 Score=23.00 Aligned_cols=87 Identities=11% Similarity=0.041 Sum_probs=48.8
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhc---------
Q 025500 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV--------- 175 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~--------- 175 (252)
.+++.+++-+++.|.+.|++. ++...+-+.|-..= .-|+.+|....+...++.
T Consensus 6 ~~~e~L~~~~~~vl~~~G~~e------------e~A~~vA~~lv~ad------~~G~~SHGv~r~p~yi~~l~~G~i~~~ 67 (349)
T COG2055 6 VSAEELKALIEEVLRKAGVPE------------EDARAVADVLVAAD------LRGVDSHGVGRLPGYVRRLKAGKINPD 67 (349)
T ss_pred ecHHHHHHHHHHHHHHcCCCH------------HHHHHHHHHHHHHH------hcCCcccchHHHHHHHHHHHcCCcCCC
Confidence 578999999999999999832 11222222222221 246666666555544332
Q ss_pred C-------CceEEeeecCccc--c---chhhhHHHHHHHhCCeEEe
Q 025500 176 H-------PITAVQMEWSLWT--R---DIEEEIIPLCRELGIGIVP 209 (252)
Q Consensus 176 ~-------~~~~~q~~~~~~~--~---~~~~~l~~~~~~~gi~v~a 209 (252)
. .+.+.+++=+--. . ..-+..++.|+++||++++
T Consensus 68 a~~~i~~~~~a~~~iDa~~g~G~~a~~~am~~aie~Ak~~Gia~va 113 (349)
T COG2055 68 AEPEIVREAPAVAVLDADGGFGQVAAKKAMELAIEKAKQHGIAAVA 113 (349)
T ss_pred CceEEEeecCcEEEEeCCCCcchHHHHHHHHHHHHHHHHhCeeEEE
Confidence 1 1233333222111 1 1226789999999998775
No 371
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=22.59 E-value=4.6e+02 Score=21.92 Aligned_cols=83 Identities=11% Similarity=0.098 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHCCCCEEeCcCCcC------CC-----cHHHHHHHHHhc------CCCCCEEEEeccCccCCCCccccc
Q 025500 41 EDGISMIKHAFSKGITFFDTADVYG------QN-----ANEVLLGKALKQ------LPREKIQVATKFGIAGIGVAGVIV 103 (252)
Q Consensus 41 ~~~~~~l~~A~~~Gin~~Dta~~Yg------~g-----~se~~ig~~l~~------~~R~~~~i~tK~~~~~~~~~~~~~ 103 (252)
+...+.+++|.+.|+..+=-+++.- .. .+...+-+.++. .-++++-| ++|...
T Consensus 15 ~~~ee~v~~A~~~Gl~~i~~TdH~p~~~~~~~~~~~~~~~~~~~~~Y~~~i~~l~~~y~~~i~I--~~GiE~-------- 84 (253)
T TIGR01856 15 DTLEEVVQEAIQLGFEEICFTEHAPLPFEYPEETALDKMAFSSLPEYFKEINRLKKEYADKLKI--LIGLEV-------- 84 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEecCCCCcccCCCccccccchhHHHHHHHHHHHHHHHHHhhCCCeE--EEEEEe--------
Confidence 4578999999999999776665532 10 112223332322 11223332 222211
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEccCCC
Q 025500 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVD 135 (252)
Q Consensus 104 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~ 135 (252)
+.- ....+.++..|++.+.|++ +..+|+..
T Consensus 85 ~~~-~~~~~~~~~~l~~~~~D~v-igSvH~~~ 114 (253)
T TIGR01856 85 DYI-PGFEDFTKDFLDEYGLDFV-IGSVHFLG 114 (253)
T ss_pred ccc-cchHHHHHHHHHHCCCCeE-EEEEEeec
Confidence 011 1233556678888888887 88889874
No 372
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=22.57 E-value=2.4e+02 Score=21.72 Aligned_cols=19 Identities=16% Similarity=0.394 Sum_probs=12.1
Q ss_pred hhhHHHHHHHhCCeEEecc
Q 025500 193 EEEIIPLCRELGIGIVPYS 211 (252)
Q Consensus 193 ~~~l~~~~~~~gi~v~a~s 211 (252)
...+.+.|.++||.+..+.
T Consensus 106 d~~v~~~l~~~~i~~~~~~ 124 (165)
T PF00875_consen 106 DERVRKALKKHGIKVHTFD 124 (165)
T ss_dssp HHHHHHHHHHTTSEEEEE-
T ss_pred HHHHHHHHHhcceEEEEEC
Confidence 3567777777777776543
No 373
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=22.50 E-value=5.8e+02 Score=23.06 Aligned_cols=123 Identities=13% Similarity=0.057 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHCCCCEEeCcCCcCC--CcHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHHH
Q 025500 41 EDGISMIKHAFSKGITFFDTADVYGQ--NANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASL 118 (252)
Q Consensus 41 ~~~~~~l~~A~~~Gin~~Dta~~Yg~--g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 118 (252)
++..++++.|++.|+.-|=+...|.. +.++..+-+.++...+-...|....-... ....+.+.+.++.+.
T Consensus 167 ~~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~--------~~e~~av~~~~~~a~ 238 (415)
T cd01297 167 AKMRELLREALEAGALGISTGLAYAPRLYAGTAELVALARVAARYGGVYQTHVRYEG--------DSILEALDELLRLGR 238 (415)
T ss_pred HHHHHHHHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEEEEEECccc--------ccHHHHHHHHHHHHH
Confidence 45677788899999876655445533 34667777777654444556665553221 112334444444433
Q ss_pred HHcCCCcccEEEccCCCCC----CCHHHHHHHHHHHHHcCCccEEEccCCC---HHHHHHHhhc
Q 025500 119 KRLDVDYIDLYYQHRVDTS----VPIEETIGEMKKLVEEGKIKYIGLSEAS---PGTIRRAHAV 175 (252)
Q Consensus 119 ~~Lg~d~iDl~~lh~~~~~----~~~~~~~~~L~~l~~~G~ir~iGvs~~~---~~~l~~~~~~ 175 (252)
+.|. -+.+.|-.... ....++++.+++.+++|.--...++.+. ...+.++++.
T Consensus 239 -~~g~---r~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~G~~v~~e~~p~~~~~~~~~~~l~~~ 298 (415)
T cd01297 239 -ETGR---PVHISHLKSAGAPNWGKIDRLLALIEAARAEGLQVTADVYPYGAGSEDDVRRIMAH 298 (415)
T ss_pred -HhCC---CEEEEEEecCCCcccchHHHHHHHHHHHHHhCCcEEEEeCCCCCCcHHHHHHHHcC
Confidence 3454 34555554222 2356677888888888864444454432 3445555543
No 374
>PRK10060 RNase II stability modulator; Provisional
Probab=22.44 E-value=7.2e+02 Score=24.14 Aligned_cols=100 Identities=11% Similarity=0.238 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHcCCCcccEEEccCCCC--CCCHHHHHHHHHHHHHcCCccEEEccCCCH--HHHHHHhhcCCceEEee
Q 025500 108 DYVRSCCEASLKRLDVDYIDLYYQHRVDT--SVPIEETIGEMKKLVEEGKIKYIGLSEASP--GTIRRAHAVHPITAVQM 183 (252)
Q Consensus 108 ~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~--~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~--~~l~~~~~~~~~~~~q~ 183 (252)
..+.+.+.+.|++.+++ ...+.+.-... ..+...+.+.+.+|++.|- .|.+.+|+. ..+..+.. .+++.+-+
T Consensus 507 ~~~~~~l~~~l~~~~~~-~~~l~lEitE~~~~~~~~~~~~~l~~L~~~G~--~ialDdfGtg~ssl~~L~~-l~~d~iKi 582 (663)
T PRK10060 507 QTIFTALKQALQELNFE-YCPIDVELTESCLIENEELALSVIQQFSQLGA--QVHLDDFGTGYSSLSQLAR-FPIDAIKL 582 (663)
T ss_pred CcHHHHHHHHHHHHCcC-cceEEEEECCchhhcCHHHHHHHHHHHHHCCC--EEEEECCCCchhhHHHHHh-CCCCEEEE
Confidence 44677888888888874 34444433332 2345677888999999998 566666653 33444433 56777777
Q ss_pred ecCccc--------cchhhhHHHHHHHhCCeEEecc
Q 025500 184 EWSLWT--------RDIEEEIIPLCRELGIGIVPYS 211 (252)
Q Consensus 184 ~~~~~~--------~~~~~~l~~~~~~~gi~v~a~s 211 (252)
+-++.. +..-..++..|+..|+.|+|=.
T Consensus 583 D~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viAeG 618 (663)
T PRK10060 583 DQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEG 618 (663)
T ss_pred CHHHHhccccCcchHHHHHHHHHHHHHCCCcEEEec
Confidence 644332 1122778999999999999754
No 375
>PHA02128 hypothetical protein
Probab=22.44 E-value=3.2e+02 Score=20.04 Aligned_cols=70 Identities=16% Similarity=0.270 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhh-----------------cCC-ceEEee---ecCccccchhhhHHHH
Q 025500 141 EETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHA-----------------VHP-ITAVQM---EWSLWTRDIEEEIIPL 199 (252)
Q Consensus 141 ~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~-----------------~~~-~~~~q~---~~~~~~~~~~~~l~~~ 199 (252)
...+.-..++..+|-+|-|-+...+-.+.+.... ..| ..+.++ +|.+-.+....++.++
T Consensus 60 ~gl~~lane~~aqgg~r~itmn~ankrhv~dmv~~~wrgdi~ist~selt~~cp~vkflmideseytltsrh~rqeiydw 139 (151)
T PHA02128 60 TGLLHLANEVSAQGGARIITMNSANKRHVQDMVSYQWRGDIRISTISELTDRCPKVKFLMIDESEYTLTSRHQRQEIYDW 139 (151)
T ss_pred chHHHHHHHHHhcCCeEEEEeccchhhHHHHHhcccccCceEEeeHHHHhccCCeeEEEEEcchhceecchhhHHHHHhh
Confidence 4567777889999999999887766555544422 122 333444 5666555555889999
Q ss_pred HHHhCCeEEec
Q 025500 200 CRELGIGIVPY 210 (252)
Q Consensus 200 ~~~~gi~v~a~ 210 (252)
+--+|+.++.+
T Consensus 140 agthgvefvim 150 (151)
T PHA02128 140 AGTHGVEFVIM 150 (151)
T ss_pred cccCceEEEEe
Confidence 99999988754
No 376
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=22.43 E-value=4e+02 Score=21.16 Aligned_cols=99 Identities=10% Similarity=0.062 Sum_probs=50.5
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccE-EEccCCCHHHHHHHhhcCCceEEee
Q 025500 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKY-IGLSEASPGTIRRAHAVHPITAVQM 183 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~-iGvs~~~~~~l~~~~~~~~~~~~q~ 183 (252)
.++..+.+.++. +.+.|.|++-+-....+... .....++.++++++...+.- +.+-..+.....+.......+.+|+
T Consensus 8 ~~~~~~~~~~~~-~~~~g~d~i~~~~~Dg~~~~-~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~v 85 (210)
T TIGR01163 8 ADFARLGEEVKA-VEEAGADWIHVDVMDGHFVP-NLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITV 85 (210)
T ss_pred CCHHHHHHHHHH-HHHcCCCEEEEcCCCCCCCC-CcccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEE
Confidence 345556655544 45778877777533322211 11123555566655432221 5555555554444333455677777
Q ss_pred ecCccccchhhhHHHHHHHhCCeE
Q 025500 184 EWSLWTRDIEEEIIPLCRELGIGI 207 (252)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~~gi~v 207 (252)
..... ......++.+++.|+.+
T Consensus 86 h~~~~--~~~~~~~~~~~~~g~~~ 107 (210)
T TIGR01163 86 HPEAS--EHIHRLLQLIKDLGAKA 107 (210)
T ss_pred ccCCc--hhHHHHHHHHHHcCCcE
Confidence 54332 11255667777777654
No 377
>PF00101 RuBisCO_small: Ribulose bisphosphate carboxylase, small chain; InterPro: IPR000894 RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) is a bifunctional enzyme that catalyses both the carboxylation and oxygenation of ribulose-1,5-bisphosphate (RuBP) [], thus fixing carbon dioxide as the first step of the Calvin cycle. RuBisCO is the major protein in the stroma of chloroplasts, and in higher plants exists as a complex of 8 large and 8 small subunits. The function of the small subunit is unknown []. While the large subunit is coded for by a single gene, the small subunit is coded for by several different genes, which are distributed in a tissue specific manner. They are transcriptionally regulated by light receptor phytochrome [], which results in RuBisCO being more abundant during the day when it is required. The RuBisCo small subunit consists of a central four-stranded beta-sheet, with two helices packed against it [].; PDB: 1BWV_W 1IWA_P 3AXM_X 1WDD_S 3AXK_T 1IR2_K 1RBL_N 1UZH_J 1RSC_P 1UW9_C ....
Probab=22.37 E-value=3.1e+02 Score=19.77 Aligned_cols=75 Identities=20% Similarity=0.164 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCE-EeCcCCcCCCcHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHHH
Q 025500 37 PVSEEDGISMIKHAFSKGITF-FDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCE 115 (252)
Q Consensus 37 ~~~~~~~~~~l~~A~~~Gin~-~Dta~~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 115 (252)
+...++..+.+...+..|.+. ++-|+.= -.|...+-.-|++.. ...++..+...|+
T Consensus 10 ~l~~~~i~~Qv~~ll~qG~~i~iE~ad~r---------------~~r~~~W~mW~~p~~--------~~~~~~~Vl~el~ 66 (99)
T PF00101_consen 10 PLTDEEIAKQVRYLLSQGWIIGIEHADPR---------------RFRTSYWQMWKLPMF--------GCTDPAQVLAELE 66 (99)
T ss_dssp ---HHHHHHHHHHHHHTT-EEEEEEESCG---------------GSTSSS-EEESSEBT--------TBSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhhhcCceeeEEecCCC---------------CCCCCEeecCCCCCc--------CCCCHHHHHHHHH
Confidence 346889999999999999884 6644321 133333433344332 2457899999999
Q ss_pred HHHHHcCCCcccEEEccCC
Q 025500 116 ASLKRLDVDYIDLYYQHRV 134 (252)
Q Consensus 116 ~sL~~Lg~d~iDl~~lh~~ 134 (252)
..+..---+||-|+-+.+.
T Consensus 67 ~c~~~~p~~yVRlig~D~~ 85 (99)
T PF00101_consen 67 ACLAEHPGEYVRLIGFDNK 85 (99)
T ss_dssp HHHHHSTTSEEEEEEEETT
T ss_pred HHHHhCCCceEEEEEEcCc
Confidence 9999999999988777553
No 378
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=22.31 E-value=6.3e+02 Score=23.37 Aligned_cols=149 Identities=15% Similarity=0.109 Sum_probs=83.2
Q ss_pred CCHHHHHHHHHHHHHC-CCC-EEeCcCCcCCCcHHHHHHHHHh-c----CCCCCEEEEeccCccCCCCcccccCCChHHH
Q 025500 38 VSEEDGISMIKHAFSK-GIT-FFDTADVYGQNANEVLLGKALK-Q----LPREKIQVATKFGIAGIGVAGVIVKGAPDYV 110 (252)
Q Consensus 38 ~~~~~~~~~l~~A~~~-Gin-~~Dta~~Yg~g~se~~ig~~l~-~----~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i 110 (252)
.+.+...+.+..+++. +-. ++-.....|.-.--+.+.+.+. . ...++|+|++-.
T Consensus 104 fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~------------------- 164 (459)
T COG1167 104 FPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGA------------------- 164 (459)
T ss_pred CCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCH-------------------
Confidence 4667777777777753 333 1111111221122345555555 2 345688887653
Q ss_pred HHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccC----CCHHHHHHHhhcCCceEE-----
Q 025500 111 RSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE----ASPGTIRRAHAVHPITAV----- 181 (252)
Q Consensus 111 ~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~----~~~~~l~~~~~~~~~~~~----- 181 (252)
..+++-.++-| ++.=|.+.+.+|.. ..++..+... -++.++|.. .+++.++++.+..++.++
T Consensus 165 q~al~l~~~~l-~~pGd~v~vE~PtY-------~~~~~~~~~~-g~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~ 235 (459)
T COG1167 165 QQALDLLLRLL-LDPGDTVLVEDPTY-------PGALQALEAL-GARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPT 235 (459)
T ss_pred HHHHHHHHHHh-CCCCCEEEEcCCCc-------HHHHHHHHHc-CCcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCC
Confidence 23444333333 34568899988854 2333333333 456677754 567788888765443333
Q ss_pred -eeecCccccch-hhhHHHHHHHhCCeEEecccCc
Q 025500 182 -QMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLG 214 (252)
Q Consensus 182 -q~~~~~~~~~~-~~~l~~~~~~~gi~v~a~spl~ 214 (252)
|++........ ...+++.|+++++-||--.+.+
T Consensus 236 ~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~ 270 (459)
T COG1167 236 FQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYG 270 (459)
T ss_pred CCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcch
Confidence 33333222211 2789999999999999666654
No 379
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=22.21 E-value=93 Score=27.68 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=18.4
Q ss_pred chhhhHHHHHHHhCCeEEecccCc
Q 025500 191 DIEEEIIPLCRELGIGIVPYSPLG 214 (252)
Q Consensus 191 ~~~~~l~~~~~~~gi~v~a~spl~ 214 (252)
+...++.+.|+++||.+-.|-...
T Consensus 138 Div~El~~A~rk~Glk~G~Y~S~~ 161 (346)
T PF01120_consen 138 DIVGELADACRKYGLKFGLYYSPW 161 (346)
T ss_dssp -HHHHHHHHHHHTT-EEEEEEESS
T ss_pred CHHHHHHHHHHHcCCeEEEEecch
Confidence 344889999999999998877665
No 380
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=22.21 E-value=68 Score=28.54 Aligned_cols=17 Identities=41% Similarity=0.765 Sum_probs=14.0
Q ss_pred hhHHHHHHHhCCeEEec
Q 025500 194 EEIIPLCRELGIGIVPY 210 (252)
Q Consensus 194 ~~l~~~~~~~gi~v~a~ 210 (252)
..+.+.|+++||.+-+.
T Consensus 213 ~~i~~~c~~rgI~lASH 229 (377)
T COG3454 213 QAIAALCRERGIALASH 229 (377)
T ss_pred HHHHHHHHHcCCceecC
Confidence 67999999999987644
No 381
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=21.94 E-value=1.5e+02 Score=25.79 Aligned_cols=49 Identities=18% Similarity=0.186 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHcCCCcc--cEEEccCCCCCCCHHHHHHHHHHHHHcCCccE
Q 025500 107 PDYVRSCCEASLKRLDVDYI--DLYYQHRVDTSVPIEETIGEMKKLVEEGKIKY 158 (252)
Q Consensus 107 ~~~i~~~~~~sL~~Lg~d~i--Dl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~ 158 (252)
.+...+.+.+.+++||+.+- ..+.-+.+ ...+.+++.++.|+++|.|-.
T Consensus 81 ~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~---~~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 81 VEEMSGEHKEDFRRLGISYDWSDEYITTEP---EYSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHHhCccccCCCCeECCCH---HHHHHHHHHHHHHHHCCCEEe
Confidence 56677889999999999532 22222322 235678899999999999764
No 382
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=21.92 E-value=6.6e+02 Score=23.46 Aligned_cols=99 Identities=16% Similarity=0.181 Sum_probs=55.2
Q ss_pred CChHHHHHHHHHH----HHHcC-CCcccEEEccCCCCCCCHHHHHHHHHHHHHc-CCccEEEccCCCHHHHHHHhhcC--
Q 025500 105 GAPDYVRSCCEAS----LKRLD-VDYIDLYYQHRVDTSVPIEETIGEMKKLVEE-GKIKYIGLSEASPGTIRRAHAVH-- 176 (252)
Q Consensus 105 ~~~~~i~~~~~~s----L~~Lg-~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~-G~ir~iGvs~~~~~~l~~~~~~~-- 176 (252)
.+.+.+.+.++.. ..+-| .-.+|++-|+.... +.+.....++.+++. +.. |.+.+++++.++++++..
T Consensus 102 l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~--dp~~v~~~Vk~V~~~~dvP--LSIDT~dpevleaAleagad 177 (450)
T PRK04165 102 MDDEEIDARLKKINNFQFERVGEILKLDMVALRNASG--DPEKFAKAVKKVAETTDLP--LILCSEDPAVLKAALEVVAD 177 (450)
T ss_pred CChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCC--CHHHHHHHHHHHHHhcCCC--EEEeCCCHHHHHHHHHhcCC
Confidence 3445555555444 12333 22356777776544 334455566666653 443 677789999999988663
Q ss_pred -CceEEeeecCccccchhhhHHHHHHHhCCeEEeccc
Q 025500 177 -PITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSP 212 (252)
Q Consensus 177 -~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~sp 212 (252)
.+.++-. + .+.-+.+.+.|+++|..++...+
T Consensus 178 ~~plI~Sa--t---~dN~~~m~~la~~yg~pvVv~~~ 209 (450)
T PRK04165 178 RKPLLYAA--T---KENYEEMAELAKEYNCPLVVKAP 209 (450)
T ss_pred CCceEEec--C---cchHHHHHHHHHHcCCcEEEEch
Confidence 1222221 1 11115677777777777777554
No 383
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=21.87 E-value=2.7e+02 Score=19.04 Aligned_cols=56 Identities=18% Similarity=0.222 Sum_probs=31.7
Q ss_pred HHHHHHcCCccEEEccCCCHHHHHHHhhcCCc--eEEeeecCccccchhhhHHHHHHHhCCeEEecc
Q 025500 147 MKKLVEEGKIKYIGLSEASPGTIRRAHAVHPI--TAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYS 211 (252)
Q Consensus 147 L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~--~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~s 211 (252)
++++++.|++. +|. .+..++++.... .++--+.+.. ....+..+|++++|+++-+.
T Consensus 3 ~~~~~ragkl~-~G~-----~~v~kai~~gkaklViiA~D~~~~---~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 3 YEKVSQAKSIV-IGT-----KQTVKALKRGSVKEVVVAEDADPR---LTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred hHHHHhcCCEE-EcH-----HHHHHHHHcCCeeEEEEECCCCHH---HHHHHHHHHHHcCCCEEEEC
Confidence 45666666543 333 455555554433 3333333331 22678889999999987665
No 384
>PF11590 DNAPolymera_Pol: DNA polymerase catalytic subunit Pol; InterPro: IPR021639 This family of proteins represents the catalytic subunit, Pol, of the Herpes simplex virus DNA polymerase. Pol binds UL42, making up the DNA polymerase. UL42 is a processivity subunit which binds to the C-terminal of Pol in a similar way that the cell cycle regulator p21 binds to PCNA []. ; GO: 0003887 DNA-directed DNA polymerase activity, 0004523 ribonuclease H activity; PDB: 1DML_H.
Probab=21.86 E-value=67 Score=19.04 Aligned_cols=32 Identities=22% Similarity=0.469 Sum_probs=17.6
Q ss_pred ccceeecccccCCCCCCCCCHHHHHHHHHHHHH
Q 025500 20 VSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFS 52 (252)
Q Consensus 20 vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~ 52 (252)
++.-||.+.+.|.+.... .+++.++-|..|++
T Consensus 7 l~~AgF~~i~~g~g~~~~-~eeEt~qkL~~AF~ 38 (41)
T PF11590_consen 7 LRSAGFATIGSGAGLPSS-EEEETRQKLRRAFD 38 (41)
T ss_dssp HHHTT-EEECTTS-------HHHHHHHHHHHHH
T ss_pred HHHHhHHHhccCccccch-hhHHHHHHHHHHHH
Confidence 445566666555433332 67888899999886
No 385
>COG0218 Predicted GTPase [General function prediction only]
Probab=21.85 E-value=4.5e+02 Score=21.57 Aligned_cols=100 Identities=15% Similarity=-0.006 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHC------CCCEEeCcCCcCCCcHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHH
Q 025500 41 EDGISMIKHAFSK------GITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (252)
Q Consensus 41 ~~~~~~l~~A~~~------Gin~~Dta~~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 114 (252)
+...+++...++. .+-++|.-..-- ..+..+=+++......=+++.||.-- .......+.+
T Consensus 91 e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~--~~D~em~~~l~~~~i~~~vv~tK~DK-----------i~~~~~~k~l 157 (200)
T COG0218 91 EKWKKLIEEYLEKRANLKGVVLLIDARHPPK--DLDREMIEFLLELGIPVIVVLTKADK-----------LKKSERNKQL 157 (200)
T ss_pred HHHHHHHHHHHhhchhheEEEEEEECCCCCc--HHHHHHHHHHHHcCCCeEEEEEcccc-----------CChhHHHHHH
Confidence 4556666666654 444677543332 35677778888777788899999853 3466677888
Q ss_pred HHHHHHcCCCcccE--EEccCCCCCCCHHHHHHHHHHHHHc
Q 025500 115 EASLKRLDVDYIDL--YYQHRVDTSVPIEETIGEMKKLVEE 153 (252)
Q Consensus 115 ~~sL~~Lg~d~iDl--~~lh~~~~~~~~~~~~~~L~~l~~~ 153 (252)
....++|+.+..|- +.+........++++++.+.+....
T Consensus 158 ~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 158 NKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 89999998877775 4444444455688888888776543
No 386
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=21.81 E-value=4.5e+02 Score=21.48 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEeC
Q 025500 39 SEEDGISMIKHAFSKGITFFDT 60 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dt 60 (252)
-+|.....++.|++.|.+.|++
T Consensus 11 ~pENTl~af~~A~~~G~~~vE~ 32 (233)
T cd08582 11 APENTLAAFELAWEQGADGIET 32 (233)
T ss_pred CCchHHHHHHHHHHcCCCEEEE
Confidence 3588899999999999998774
No 387
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=21.73 E-value=5.7e+02 Score=23.11 Aligned_cols=57 Identities=9% Similarity=0.041 Sum_probs=37.7
Q ss_pred ccCCCHHHHHHHhhc-CCceEEeeecCccccch-hhhHHHHHHHhCCeEEecccCcccc
Q 025500 161 LSEASPGTIRRAHAV-HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRGF 217 (252)
Q Consensus 161 vs~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~-~~~l~~~~~~~gi~v~a~spl~~G~ 217 (252)
+...+.+.+++++.. ..+.++..+.|+.-.-. -..+.+.|+++|+.++.=..++.+.
T Consensus 134 vd~~d~e~l~~~i~~~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~~ 192 (398)
T PRK08249 134 CETGDHEQIEAEIAKGCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPI 192 (398)
T ss_pred cCCCCHHHHHHhcCCCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCccc
Confidence 334567788777643 34444455666644322 2779999999999999888777544
No 388
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=21.69 E-value=4.8e+02 Score=21.83 Aligned_cols=128 Identities=15% Similarity=0.066 Sum_probs=78.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcC--------CC----cHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCC
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYG--------QN----ANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGA 106 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg--------~g----~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~ 106 (252)
+.++..++.+...+ ++..||.--++- .| +..+.+.+.++.+....+-|+.|+.....
T Consensus 78 ~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~~---------- 146 (231)
T TIGR00736 78 DLEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNCI---------- 146 (231)
T ss_pred CHHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCCC----------
Confidence 67788877777654 889999644442 11 23445555555533346789999976431
Q ss_pred hHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcC-CccEEEccC-CCHHHHHHHhhcCCceEEee
Q 025500 107 PDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSE-ASPGTIRRAHAVHPITAVQM 183 (252)
Q Consensus 107 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G-~ir~iGvs~-~~~~~l~~~~~~~~~~~~q~ 183 (252)
. .-...+-+.++.-|.|.+ .+|......+ .-.|+.+.++++.= .|--||..+ ++.+...+.+.. ..+.+|+
T Consensus 147 ~-~~~~~~a~~l~~aGad~i---~Vd~~~~g~~-~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~-GAd~Vmv 219 (231)
T TIGR00736 147 P-LDELIDALNLVDDGFDGI---HVDAMYPGKP-YADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKA-GADFVSV 219 (231)
T ss_pred c-chHHHHHHHHHHcCCCEE---EEeeCCCCCc-hhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHh-CCCeEEE
Confidence 1 112245566788887555 5564433221 13588899998873 477888777 667777777663 4455555
No 389
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=21.68 E-value=6e+02 Score=24.61 Aligned_cols=99 Identities=10% Similarity=0.037 Sum_probs=55.0
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEE-----EccCCCCCCCHHHHHHHHHHHHHcCC-cc---------EEEccCCCHHHH
Q 025500 105 GAPDYVRSCCEASLKRLDVDYIDLY-----YQHRVDTSVPIEETIGEMKKLVEEGK-IK---------YIGLSEASPGTI 169 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~-----~lh~~~~~~~~~~~~~~L~~l~~~G~-ir---------~iGvs~~~~~~l 169 (252)
.+.+... .+-..|.++|++.|++. -.-.+.-. ++-|+.|+.+++... ++ .+|.+++.-+.+
T Consensus 24 ~~~~d~l-~ia~~ld~~G~~siE~~GGatf~~~~~~~~---e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv 99 (593)
T PRK14040 24 LRLDDML-PIAAKLDKVGYWSLESWGGATFDACIRFLG---EDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVV 99 (593)
T ss_pred cCHHHHH-HHHHHHHHcCCCEEEecCCcchhhhccccC---CCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHH
Confidence 4444444 46677888899999883 11111111 234777777776543 33 277777665543
Q ss_pred HHHhhc---CCceEEeeecCccccchhhhHHHHHHHhCCeE
Q 025500 170 RRAHAV---HPITAVQMEWSLWTRDIEEEIIPLCRELGIGI 207 (252)
Q Consensus 170 ~~~~~~---~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v 207 (252)
++..+. ..++++.+-..+.+-+.-...++++++.|..+
T Consensus 100 ~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~ 140 (593)
T PRK14040 100 ERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHA 140 (593)
T ss_pred HHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeE
Confidence 332221 33455555433333222367889999999864
No 390
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=21.62 E-value=4.2e+02 Score=24.24 Aligned_cols=55 Identities=4% Similarity=-0.049 Sum_probs=36.3
Q ss_pred CCHHHHHHHhhc-CCceEEeeecCccccch-hhhHHHHHHHhCCeEEecccCccccC
Q 025500 164 ASPGTIRRAHAV-HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRGFF 218 (252)
Q Consensus 164 ~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~-~~~l~~~~~~~gi~v~a~spl~~G~L 218 (252)
.+.+.+++++.. ....++..+.|+.-.-. ..++.+.|+++|+.++.=..++.|.+
T Consensus 131 ~d~e~le~ai~~~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~~ 187 (425)
T PRK06084 131 DDIAALEALIDERTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPVL 187 (425)
T ss_pred CCHHHHHHHhccCCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc
Confidence 467778777653 33444444445543322 27899999999999998888776654
No 391
>PRK11024 colicin uptake protein TolR; Provisional
Probab=21.60 E-value=2.1e+02 Score=21.66 Aligned_cols=53 Identities=21% Similarity=0.216 Sum_probs=34.7
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEcc
Q 025500 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS 162 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs 162 (252)
.+.+.+...+++.+..- -|...+=..|...+.+.+.+.|+.+++.|. ..|++.
T Consensus 85 v~~~~L~~~l~~~~~~~----~~~~V~i~aD~~~~~~~vv~vmd~~k~aG~-~~v~l~ 137 (141)
T PRK11024 85 LPEEQVVAEAKSRFKAN----PKTVFLIGGAKDVPYDEIIKALNLLHSAGV-KSVGLM 137 (141)
T ss_pred cCHHHHHHHHHHHHhhC----CCceEEEEcCCCCCHHHHHHHHHHHHHcCC-CeEEEE
Confidence 35566666666555432 233334445777889999999999999984 446664
No 392
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=21.56 E-value=2e+02 Score=22.67 Aligned_cols=44 Identities=23% Similarity=0.348 Sum_probs=28.4
Q ss_pred HHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhc-CCCCCEEEEe
Q 025500 43 GISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ-LPREKIQVAT 89 (252)
Q Consensus 43 ~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~-~~R~~~~i~t 89 (252)
...+-....+.|++.....-. + ..+..|.++++. ..+.+++|+|
T Consensus 21 ~~~l~~~L~~~G~~v~~~~~v-~--Dd~~~I~~~l~~~~~~~dlVItt 65 (170)
T cd00885 21 AAFLAKELAELGIEVYRVTVV-G--DDEDRIAEALRRASERADLVITT 65 (170)
T ss_pred HHHHHHHHHHCCCEEEEEEEe-C--CCHHHHHHHHHHHHhCCCEEEEC
Confidence 334444455669987664433 2 256667788876 5678999998
No 393
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=21.54 E-value=3.8e+02 Score=22.83 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEeC
Q 025500 39 SEEDGISMIKHAFSKGITFFDT 60 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dt 60 (252)
-+|.....++.|++.|..++++
T Consensus 19 ~PENTl~af~~A~~~Gad~iE~ 40 (290)
T cd08607 19 VRENTIASFLQAAEHGADMVEF 40 (290)
T ss_pred CCccHHHHHHHHHHcCCCEEEE
Confidence 4577788899999999998774
No 394
>cd08590 PI-PLCc_Rv2075c_like Catalytic domain of uncharacterized Mycobacterium tuberculosis Rv2075c-like proteins. This subfamily corresponds to the catalytic domain present in uncharacterized Mycobacterium tuberculosis Rv2075c and its homologs. Members in this family are more closely related to the Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1(SaPLC1)-like proteins rather than the typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). In contrast, SaPLC1-like proteins have two Ca2+-chelating amino acid substitutions which convert them to metal-dependent bacterial PI-PLC. Rv2075c and its homologs have the same amino acid substitutions as well, which might suggest they have metal-dependent PI-PLC activity.
Probab=21.54 E-value=4.9e+02 Score=22.27 Aligned_cols=20 Identities=10% Similarity=0.162 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHcCCccEEEc
Q 025500 142 ETIGEMKKLVEEGKIKYIGL 161 (252)
Q Consensus 142 ~~~~~L~~l~~~G~ir~iGv 161 (252)
..|-.|++++++||.--|=.
T Consensus 150 ~~wpTL~em~~~GkrViv~~ 169 (267)
T cd08590 150 PNWPTKEDMLNSGKQVVLAT 169 (267)
T ss_pred CCCCCHHHHHhCCCEEEEEe
Confidence 35778999999999655543
No 395
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=21.54 E-value=94 Score=19.96 Aligned_cols=17 Identities=29% Similarity=0.614 Sum_probs=9.0
Q ss_pred hhHHHHHHHhCCeEEec
Q 025500 194 EEIIPLCRELGIGIVPY 210 (252)
Q Consensus 194 ~~l~~~~~~~gi~v~a~ 210 (252)
.++++.|+++|+..++.
T Consensus 18 ~~~~~~a~~~g~~~v~i 34 (67)
T smart00481 18 EELVKRAKELGLKAIAI 34 (67)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 44555555555555543
No 396
>PRK09776 putative diguanylate cyclase; Provisional
Probab=21.42 E-value=1.6e+02 Score=30.22 Aligned_cols=101 Identities=14% Similarity=0.063 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHHHcCCCcccEEEccCCCCC--CCHHHHHHHHHHHHHcCCccEEEccCCCH--HHHHHHhhcCCceEEe
Q 025500 107 PDYVRSCCEASLKRLDVDYIDLYYQHRVDTS--VPIEETIGEMKKLVEEGKIKYIGLSEASP--GTIRRAHAVHPITAVQ 182 (252)
Q Consensus 107 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~--~~~~~~~~~L~~l~~~G~ir~iGvs~~~~--~~l~~~~~~~~~~~~q 182 (252)
.+.+.+.+.+.|++.++. .+-+.+.-.+.. .+.+.+.+.++.|++.|- .|.+.+|.. ..+..+.. .+++.+-
T Consensus 939 ~~~~~~~~~~~l~~~~~~-~~~l~~Ei~e~~~~~~~~~~~~~~~~l~~~G~--~~~lddfg~g~~~~~~l~~-~~~d~iK 1014 (1092)
T PRK09776 939 SPTLLPFLLEQLENSPLP-PRLLHLEITETALLNHAESASRLVQKLRLAGC--RVVLSDFGRGLSSFNYLKA-FMADYLK 1014 (1092)
T ss_pred CchHHHHHHHHHHhcCCC-HHHeEEEEecHHhhcCHHHHHHHHHHHHHCCc--EEEEcCCCCCchHHHHHHh-CCCCEEE
Confidence 444566777788887764 234444333322 455678888999999997 455655543 23333332 4566666
Q ss_pred eecCccc--------cchhhhHHHHHHHhCCeEEecc
Q 025500 183 MEWSLWT--------RDIEEEIIPLCRELGIGIVPYS 211 (252)
Q Consensus 183 ~~~~~~~--------~~~~~~l~~~~~~~gi~v~a~s 211 (252)
++-+... +.....++..|++.|+.+++=.
T Consensus 1015 id~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iaeg 1051 (1092)
T PRK09776 1015 LDGELVANLHGNLMDEMLISIIQGHAQRLGMKTIAGP 1051 (1092)
T ss_pred ECHHHHHhHhcChhhHHHHHHHHHHHHHcCCcEEecc
Confidence 6544322 1122678899999999998753
No 397
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=21.40 E-value=3.4e+02 Score=21.89 Aligned_cols=35 Identities=6% Similarity=-0.022 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhc
Q 025500 140 IEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAV 175 (252)
Q Consensus 140 ~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 175 (252)
..++.+.|+.|+++|.--.| +||.....++..++.
T Consensus 94 ~~g~~~~l~~l~~~g~~~~i-~S~~~~~~~~~~l~~ 128 (222)
T PRK10826 94 LPGVREALALCKAQGLKIGL-ASASPLHMLEAVLTM 128 (222)
T ss_pred CCCHHHHHHHHHHCCCeEEE-EeCCcHHHHHHHHHh
Confidence 44678888999999866666 778776666665544
No 398
>PLN02449 ferrochelatase
Probab=21.36 E-value=5.6e+02 Score=24.20 Aligned_cols=66 Identities=18% Similarity=0.178 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHcCCCc----ccEEEccCCCCCCCH-HHHHHHHHHHHHcCC----ccEEEccCCCHHHHHHH
Q 025500 107 PDYVRSCCEASLKRLDVDY----IDLYYQHRVDTSVPI-EETIGEMKKLVEEGK----IKYIGLSEASPGTIRRA 172 (252)
Q Consensus 107 ~~~i~~~~~~sL~~Lg~d~----iDl~~lh~~~~~~~~-~~~~~~L~~l~~~G~----ir~iGvs~~~~~~l~~~ 172 (252)
.+++++..+...++|+.+. ..+.+--......-+ ..+-++|++|.++|. |--||+.....|.|.++
T Consensus 299 ~~q~~~ta~lI~~~L~~~~~~~~~~layQSR~Gp~eWL~P~t~d~L~~L~~~Gvk~VlvvPigFvSDhiETL~Ei 373 (485)
T PLN02449 299 KAQMEECVDLIMEELKARGILNRHTLAYQSRVGPVEWLKPYTDETIVELGKKGVKSLLAVPISFVSEHIETLEEI 373 (485)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEECCcccccchHHHHHH
Confidence 5888889999999998742 333333322221111 245577888988885 33346666666666554
No 399
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=21.35 E-value=2.1e+02 Score=24.84 Aligned_cols=88 Identities=24% Similarity=0.252 Sum_probs=52.6
Q ss_pred HHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccC---CCHHHHHHHhhc-----CCceEEeeecCccc
Q 025500 118 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE---ASPGTIRRAHAV-----HPITAVQMEWSLWT 189 (252)
Q Consensus 118 L~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~---~~~~~l~~~~~~-----~~~~~~q~~~~~~~ 189 (252)
+++..-+..|+..+..|...-- .++ +.++..- ..|=|+. +....++++++. .++.++-++||+.+
T Consensus 156 ~kk~a~E~~~~~IIDsaaG~gC--pVi---~sl~~aD--~ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~g~ 228 (284)
T COG1149 156 LKKHAKELADLLIIDSAAGTGC--PVI---ASLKGAD--LAILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNLGD 228 (284)
T ss_pred HHHhhhhhcceeEEecCCCCCC--hHH---HhhccCC--EEEEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCCCc
Confidence 3333333378899988754321 122 2222222 2445544 333455555443 46777777885433
Q ss_pred cchhhhHHHHHHHhCCeEEecccCccc
Q 025500 190 RDIEEEIIPLCRELGIGIVPYSPLGRG 216 (252)
Q Consensus 190 ~~~~~~l~~~~~~~gi~v~a~spl~~G 216 (252)
.++-++|++.|+.+++--|+..-
T Consensus 229 ----s~ie~~~~e~gi~il~~IPyd~~ 251 (284)
T COG1149 229 ----SEIEEYCEEEGIPILGEIPYDKD 251 (284)
T ss_pred ----hHHHHHHHHcCCCeeEECCcchh
Confidence 37999999999999999998643
No 400
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=21.29 E-value=2.9e+02 Score=23.49 Aligned_cols=68 Identities=10% Similarity=-0.013 Sum_probs=42.3
Q ss_pred HHHHHHHcCCccEEEc-cCCCHHHHHHHhhcCCceEE--eeecCccccchhhhHHHHHHHhCCeEEecccCc
Q 025500 146 EMKKLVEEGKIKYIGL-SEASPGTIRRAHAVHPITAV--QMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLG 214 (252)
Q Consensus 146 ~L~~l~~~G~ir~iGv-s~~~~~~l~~~~~~~~~~~~--q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~ 214 (252)
.|.+..++|+. .+|+ .......+.+++....||++ -.+.++++...-..++..|+..|+..++.-|-.
T Consensus 9 ~lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~ 79 (256)
T PRK10558 9 KFKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTN 79 (256)
T ss_pred HHHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCC
Confidence 35566666874 3443 23333455555554445554 446777766544788899999999988877543
No 401
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=21.27 E-value=3.5e+02 Score=20.01 Aligned_cols=64 Identities=17% Similarity=0.184 Sum_probs=42.2
Q ss_pred CCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHHHHHcCC---CcccEEEccCCCCC-CCHHHHHHHHHHHHHc
Q 025500 81 PREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDV---DYIDLYYQHRVDTS-VPIEETIGEMKKLVEE 153 (252)
Q Consensus 81 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~---d~iDl~~lh~~~~~-~~~~~~~~~L~~l~~~ 153 (252)
+|=-+.|+-|++... ..+..+++.+++.+..+.. ...|++++-.+... .+..+..+.|..+.+.
T Consensus 47 ~R~G~~VsKK~~~~A---------V~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03031 47 TRFGISISQKVSKKA---------VVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAECNYEQFLQELEQLLIQ 114 (122)
T ss_pred cEEEEEEecccccch---------hhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 343456666654322 4577888888888876642 35799999888653 4567777777776554
No 402
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=21.13 E-value=1.9e+02 Score=21.57 Aligned_cols=62 Identities=11% Similarity=0.096 Sum_probs=40.0
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHH
Q 025500 104 KGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRA 172 (252)
Q Consensus 104 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~ 172 (252)
+.+++.+.+.+++.|+..+.+.-++-.+..++...+-....+.-+++ | +-+-.|+.+.|+..
T Consensus 13 ~~~~e~i~~ai~~~L~~~~l~~~si~~lasi~~K~~E~~L~~~A~~l---g----~pl~~~~~~eL~~~ 74 (126)
T PRK07027 13 GVPAEQIEAAIRAALAQRPLASADVRVVATLDLKADEAGLLALCARH---G----WPLRAFSAAQLAAS 74 (126)
T ss_pred CCCHHHHHHHHHHHHHHcCCCHHHhheeEehhhhcCCHHHHHHHHHh---C----CCeEEeCHHHHHhc
Confidence 46899999999999999999777777777776544333333333333 1 22333466666554
No 403
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=21.12 E-value=5e+02 Score=21.81 Aligned_cols=88 Identities=11% Similarity=0.042 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCCCc-HHHHHHHHHhc-CCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQNA-NEVLLGKALKQ-LPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEA 116 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~-se~~ig~~l~~-~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 116 (252)
+.+++.+.+..+.+.+.+.++.--.|=... +...+-..+.+ .+.+.+.++-+..... .....+.+.-.+-+..
T Consensus 12 ~~~~~~e~~~~~~~~~~Di~E~RvD~l~~~~~~~~~~~~~~e~~~~~~~IfT~R~~~EG-----G~~~~~~~~~i~ll~~ 86 (231)
T COG0710 12 DIAELKEQAEKSKELDADIVELRVDLLESNVEVLEVAKALREKDPDKPLIFTFRTVKEG-----GEFPGSEEEYIELLKK 86 (231)
T ss_pred CHHHHHHHHHHhhccCCCEEEEeechhcccchHHHHHHHHHHhccCCceEEEEeehhhc-----CCCCCCHHHHHHHHHH
Confidence 678888999999999988777544343211 23333344444 3444577776643322 1223456677777888
Q ss_pred HHHHcCCCcccEEEc
Q 025500 117 SLKRLDVDYIDLYYQ 131 (252)
Q Consensus 117 sL~~Lg~d~iDl~~l 131 (252)
..+.-+.||+|+=+.
T Consensus 87 la~~~~~d~iDiEl~ 101 (231)
T COG0710 87 LAELNGPDYIDIELS 101 (231)
T ss_pred HHhhcCCCEEEEEcc
Confidence 888778999997543
No 404
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=21.10 E-value=6.2e+02 Score=24.48 Aligned_cols=100 Identities=10% Similarity=0.026 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCcccE-----EEccCCCCCCCHHHHHHHHHHHHHcCCccEE-------EccCCCHHHHHHHhhc---
Q 025500 111 RSCCEASLKRLDVDYIDL-----YYQHRVDTSVPIEETIGEMKKLVEEGKIKYI-------GLSEASPGTIRRAHAV--- 175 (252)
Q Consensus 111 ~~~~~~sL~~Lg~d~iDl-----~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~i-------Gvs~~~~~~l~~~~~~--- 175 (252)
+-.+-+.|.+.|+++|++ |-.-.+....+..+.++.+.+....=++..+ |..++.-+.+++-.+.
T Consensus 23 kl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~~a~~ 102 (582)
T TIGR01108 23 MLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFVKKAVE 102 (582)
T ss_pred HHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHHHHHHHH
Q ss_pred CCceEEeeecCccccchhhhHHHHHHHhCCeEEec
Q 025500 176 HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPY 210 (252)
Q Consensus 176 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~gi~v~a~ 210 (252)
..++++.+-..+.+...-...+++++++|..+..+
T Consensus 103 ~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~ 137 (582)
T TIGR01108 103 NGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGT 137 (582)
T ss_pred CCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEE
No 405
>PRK05406 LamB/YcsF family protein; Provisional
Probab=21.09 E-value=4e+02 Score=22.68 Aligned_cols=81 Identities=10% Similarity=0.242 Sum_probs=48.7
Q ss_pred eecccccCCCCCCCCCHHHHHHHHHHH-HHCCCCEEeCcCCcCCCcHHHHHHHHHhcCCCCCEEEEeccCccCCCC-ccc
Q 025500 24 GYGCMNLSGGYSSPVSEEDGISMIKHA-FSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGV-AGV 101 (252)
Q Consensus 24 glG~~~~g~~~~~~~~~~~~~~~l~~A-~~~Gin~~Dta~~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~-~~~ 101 (252)
|||.|.+| ++++....+..| +.+|. |.| ....+-+.++-.....|-|...-++++... +..
T Consensus 13 ~fG~w~~g-------~D~~lmp~IssANIACG~-------HAG---Dp~~M~~tv~lA~~~gV~IGAHPgypD~~gFGRR 75 (246)
T PRK05406 13 SFGAWKMG-------DDEALLPLVTSANIACGF-------HAG---DPAVMRRTVRLAKENGVAIGAHPGYPDLEGFGRR 75 (246)
T ss_pred CCCCCCCC-------CHHHHHHHhhhHHHhccc-------cCC---CHHHHHHHHHHHHHcCCeEccCCCCCccCCCCCC
Confidence 78888876 355566666555 23343 566 455566666645566777777766655321 222
Q ss_pred ccCCChHHHHHHHHHHHHHc
Q 025500 102 IVKGAPDYVRSCCEASLKRL 121 (252)
Q Consensus 102 ~~~~~~~~i~~~~~~sL~~L 121 (252)
.-+.+++.+.+.+...+..|
T Consensus 76 ~m~~s~~el~~~v~yQigAL 95 (246)
T PRK05406 76 NMDLSPEELYALVLYQIGAL 95 (246)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 34567888888766666555
No 406
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=21.06 E-value=1.3e+02 Score=27.69 Aligned_cols=108 Identities=12% Similarity=0.185 Sum_probs=47.5
Q ss_pred CccccceeecccccCCCCCCCCCH----HHHHHHHHHHHHCCCC--EEeCcCCcC-CC--c-HHHHHHHHHhc------C
Q 025500 17 GLEVSKLGYGCMNLSGGYSSPVSE----EDGISMIKHAFSKGIT--FFDTADVYG-QN--A-NEVLLGKALKQ------L 80 (252)
Q Consensus 17 g~~vs~lglG~~~~g~~~~~~~~~----~~~~~~l~~A~~~Gin--~~Dta~~Yg-~g--~-se~~ig~~l~~------~ 80 (252)
|....+|-||.-.+|-..+...+. +.+.+++...+++|++ |+||+-... ++ . .|.+.-|+.+= .
T Consensus 79 g~~~~~iiLGGDHLGP~~w~~lpaeeAM~~A~~li~ayv~AGF~KIHLD~Sm~ca~d~~~L~d~~vA~Raa~L~~~aE~~ 158 (424)
T PF08013_consen 79 GFPRDRIILGGDHLGPNPWQHLPAEEAMAKAKELIRAYVEAGFTKIHLDCSMDCAGDPKPLPDETVAERAARLCEVAEEA 158 (424)
T ss_dssp T--GGGEEEEEEEESSCCCTTSBHHHHHHHHHHHHHHHHCTT--EEEE---C--CTS-SC--HHHHHHHHHHHHHHHHCC
T ss_pred CCchhhEEecCCCCCcccccCCCHHHHHHHHHHHHHHHHHcCCceEeecCCCCCCCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 555667899988888643332244 4568899999999999 889876543 22 1 23333333321 1
Q ss_pred ------CCCCEEEEeccCccCCCCc--ccccCCChHHHHH---HHHHHHHHcCCC
Q 025500 81 ------PREKIQVATKFGIAGIGVA--GVIVKGAPDYVRS---CCEASLKRLDVD 124 (252)
Q Consensus 81 ------~R~~~~i~tK~~~~~~~~~--~~~~~~~~~~i~~---~~~~sL~~Lg~d 124 (252)
++--++|.|-+....-... +...-.+++..++ ..++.+++.|++
T Consensus 159 ~~~~~~~~pvYvIGTEVPvPGGa~e~~~~l~vTs~ea~~~Ti~~h~~aF~~~GL~ 213 (424)
T PF08013_consen 159 AKRRGGPPPVYVIGTEVPVPGGAQEALDGLAVTSPEAAEATIETHRKAFEAAGLE 213 (424)
T ss_dssp S-HHHHHH-EEEEE-SS-----------------HHHHHHHHHHHHHHHHCCT-H
T ss_pred HHhcCCCCceEEeCCccCCCCcccccccCCCCCCHHHHHHHHHHHHHHHHHcCcH
Confidence 1233677788754321100 0111234444444 455666776663
No 407
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=21.02 E-value=4.7e+02 Score=22.48 Aligned_cols=117 Identities=9% Similarity=0.062 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhc-----CCCCCEEEEeccCccCCC---CcccccCCChHHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQ-----LPREKIQVATKFGIAGIG---VAGVIVKGAPDYV 110 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~-----~~R~~~~i~tK~~~~~~~---~~~~~~~~~~~~i 110 (252)
.-..+.+.|+..-+.|+.++=.+++-. ++.+.+.+.|+. ...++|+-|+-....... ......-..
T Consensus 25 ~ipga~e~l~~L~~~g~~~iflTNn~~--~s~~~~~~~L~~~~~~~~~~~~i~TS~~at~~~l~~~~~~~kv~viG---- 98 (269)
T COG0647 25 AIPGAAEALKRLKAAGKPVIFLTNNST--RSREVVAARLSSLGGVDVTPDDIVTSGDATADYLAKQKPGKKVYVIG---- 98 (269)
T ss_pred cCchHHHHHHHHHHcCCeEEEEeCCCC--CCHHHHHHHHHhhcCCCCCHHHeecHHHHHHHHHHhhCCCCEEEEEC----
Confidence 457789999999999999999887765 467766666665 334555554433221100 000001111
Q ss_pred HHHHHHHHHHcCCCccc-------EEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccC
Q 025500 111 RSCCEASLKRLDVDYID-------LYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE 163 (252)
Q Consensus 111 ~~~~~~sL~~Lg~d~iD-------l~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~ 163 (252)
+..+.+.|+.+|....+ -+.+...+.....+...++ -....+| +++|+..-
T Consensus 99 ~~~l~~~l~~~G~~~~~~~~~~~~d~Vv~g~d~~~~~e~l~~a-~~~i~~g-~~fI~tNp 156 (269)
T COG0647 99 EEGLKEELEGAGFELVDEEEPARVDAVVVGLDRTLTYEKLAEA-LLAIAAG-APFIATNP 156 (269)
T ss_pred CcchHHHHHhCCcEEeccCCCCcccEEEEecCCCCCHHHHHHH-HHHHHcC-CcEEEeCC
Confidence 23466788888864333 3344444555555554444 4445555 89998753
No 408
>PRK15456 universal stress protein UspG; Provisional
Probab=20.97 E-value=1.6e+02 Score=21.81 Aligned_cols=35 Identities=17% Similarity=0.290 Sum_probs=26.1
Q ss_pred eeecCccccchhhhHHHHHHHhCCeEEecccCccc
Q 025500 182 QMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRG 216 (252)
Q Consensus 182 q~~~~~~~~~~~~~l~~~~~~~gi~v~a~spl~~G 216 (252)
+++..+....+...++++++++++.++....-+.|
T Consensus 83 ~v~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~ 117 (142)
T PRK15456 83 RIKQHVRFGSVRDEVNELAEELGADVVVIGSRNPS 117 (142)
T ss_pred ceEEEEcCCChHHHHHHHHhhcCCCEEEEcCCCCC
Confidence 33444444444578999999999999999988766
No 409
>PLN02489 homocysteine S-methyltransferase
Probab=20.93 E-value=5.9e+02 Score=22.54 Aligned_cols=170 Identities=18% Similarity=0.111 Sum_probs=98.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEeCcCCcCC-------Cc----HHHHHHHHHh---c-C-------------------CCC
Q 025500 38 VSEEDGISMIKHAFSKGITFFDTADVYGQ-------NA----NEVLLGKALK---Q-L-------------------PRE 83 (252)
Q Consensus 38 ~~~~~~~~~l~~A~~~Gin~~Dta~~Yg~-------g~----se~~ig~~l~---~-~-------------------~R~ 83 (252)
.+++...++=+..+++|-+.+-|.....+ |. .+++..++++ + . .+.
T Consensus 52 ~~Pe~V~~vH~~yl~AGAdvI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~ 131 (335)
T PLN02489 52 TSPHLIRKVHLDYLEAGADIIITASYQATIQGFESRGLSREESETLLRKSVEIACEARDIFWDKCQKGSTSRPGRELSYR 131 (335)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEecccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCC
Confidence 36788888888999999999988753221 21 1223333222 0 1 134
Q ss_pred CEEEEeccCccCCCCc-------ccccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcC--
Q 025500 84 KIQVATKFGIAGIGVA-------GVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-- 154 (252)
Q Consensus 84 ~~~i~tK~~~~~~~~~-------~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G-- 154 (252)
+++|+.-+++...-.. ......+.+.+.+.....++.|--.-+|++++.-... +.|+..+++.+++.+
T Consensus 132 ~~~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~---l~E~~a~~~~~~~~~~~ 208 (335)
T PLN02489 132 PILVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLAEAGPDLIAFETIPN---KLEAQAYVELLEEENIK 208 (335)
T ss_pred CcEEEEEcCCccccccCCcccCCCCccCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccCC---hHHHHHHHHHHHHcCCC
Confidence 6888888887653211 1122367788888888888877555699999976643 455555556566554
Q ss_pred CccEEEccC---------CCHHHHHHHhhc-CCceEEeeecCccccchhhhHHHHHHHh-CCeEEeccc
Q 025500 155 KIKYIGLSE---------ASPGTIRRAHAV-HPITAVQMEWSLWTRDIEEEIIPLCREL-GIGIVPYSP 212 (252)
Q Consensus 155 ~ir~iGvs~---------~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~~~~l~~~~~~~-gi~v~a~sp 212 (252)
+--.|.++. .+.+.....+.. ..++.+-+++. .+..-..+++..++. .+.+++|--
T Consensus 209 ~p~~iS~t~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGiNC~--~p~~~~~~l~~l~~~~~~pl~vyPN 275 (335)
T PLN02489 209 IPAWISFNSKDGVNVVSGDSLLECASIADSCKKVVAVGINCT--PPRFIHGLILSIRKVTSKPIVVYPN 275 (335)
T ss_pred CeEEEEEEeCCCCccCCCCcHHHHHHHHHhcCCceEEEecCC--CHHHHHHHHHHHHhhcCCcEEEECC
Confidence 443444442 222333323222 35667777775 332225566665554 677776644
No 410
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=20.89 E-value=5.3e+02 Score=22.02 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCc
Q 025500 39 SEEDGISMIKHAFSKGITFFDTA 61 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta 61 (252)
+.++..++.+...+.||+.|+..
T Consensus 18 s~e~K~~i~~~L~~~Gv~~IEvG 40 (274)
T cd07938 18 PTEDKIELIDALSAAGLRRIEVT 40 (274)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeC
Confidence 77999999999999999999986
No 411
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=20.87 E-value=2.3e+02 Score=22.04 Aligned_cols=80 Identities=11% Similarity=0.149 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCCCcH--HHHHHHHHhcCC---CCCEEEEeccCccCCCCcccccCCChHHHHHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQNAN--EVLLGKALKQLP---REKIQVATKFGIAGIGVAGVIVKGAPDYVRSC 113 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~s--e~~ig~~l~~~~---R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~ 113 (252)
..++..+..+.|.+.|...+.....|+...+ ++.+-+.++.+. +..+-+.-+..+... .+++.+.+.
T Consensus 63 ~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~--------~~~~~~~~~ 134 (201)
T cd00945 63 TTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGL--------KTADEIAKA 134 (201)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCC--------CCHHHHHHH
Confidence 3688999999999999999997544432222 344444444311 224444444433220 245555554
Q ss_pred HHHHHHHcCCCccc
Q 025500 114 CEASLKRLDVDYID 127 (252)
Q Consensus 114 ~~~sL~~Lg~d~iD 127 (252)
.+.+ +..|++.+.
T Consensus 135 ~~~~-~~~g~~~iK 147 (201)
T cd00945 135 ARIA-AEAGADFIK 147 (201)
T ss_pred HHHH-HHhCCCEEE
Confidence 3333 567776654
No 412
>PRK10997 yieM hypothetical protein; Provisional
Probab=20.79 E-value=3.3e+02 Score=25.72 Aligned_cols=63 Identities=14% Similarity=0.191 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHcCCC---cccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEc--cCCCHHHHHHH
Q 025500 110 VRSCCEASLKRLDVD---YIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGL--SEASPGTIRRA 172 (252)
Q Consensus 110 i~~~~~~sL~~Lg~d---~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGv--s~~~~~~l~~~ 172 (252)
+..+++..++.++.. .-|++++-+.......++..+.+..+++++..|..|| ++++...+.+.
T Consensus 399 l~~aL~~al~~l~~~~~r~adIVVISDF~~~~~~eel~~~L~~Lk~~~~~rf~~l~i~~~~~p~l~~i 466 (487)
T PRK10997 399 LAPCLRAIIEKMQGREWFDADAVVISDFIAQRLPDELVAKVKELQRQHQHRFHAVAMSAHGKPGIMRI 466 (487)
T ss_pred HHHHHHHHHHHHcccccCCceEEEECCCCCCCChHHHHHHHHHHHHhcCcEEEEEEeCCCCCchHHHh
Confidence 566677777777642 4789999776443335678899999998666555554 45444444444
No 413
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.76 E-value=2.4e+02 Score=25.34 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=7.7
Q ss_pred hhHHHHHHHhCCeEE
Q 025500 194 EEIIPLCRELGIGIV 208 (252)
Q Consensus 194 ~~l~~~~~~~gi~v~ 208 (252)
++++++|+++|+.++
T Consensus 113 ~~iveaA~~rgv~~m 127 (351)
T KOG2741|consen 113 EEIVEAAEARGVFFM 127 (351)
T ss_pred HHHHHHHHHcCcEEE
Confidence 455555555554443
No 414
>PRK15108 biotin synthase; Provisional
Probab=20.75 E-value=6e+02 Score=22.55 Aligned_cols=108 Identities=11% Similarity=0.028 Sum_probs=60.2
Q ss_pred CChHHHHHHHHHHHHHcCCCcccEEEccCCCC-CCCHHHHHHHHHHHHHcCCccEEEccC--CCHHHHHHHhhcC-----
Q 025500 105 GAPDYVRSCCEASLKRLDVDYIDLYYQHRVDT-SVPIEETIGEMKKLVEEGKIKYIGLSE--ASPGTIRRAHAVH----- 176 (252)
Q Consensus 105 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~-~~~~~~~~~~L~~l~~~G~ir~iGvs~--~~~~~l~~~~~~~----- 176 (252)
.+++.+.+.++. ...+|+..+-+ ...+.++ ...++.+.+.++.+++.|. .+.+|+ .+.+.++++.+.+
T Consensus 76 ls~eEI~~~a~~-~~~~G~~~i~i-~~~g~~p~~~~~e~i~~~i~~ik~~~i--~v~~s~G~ls~e~l~~LkeAGld~~n 151 (345)
T PRK15108 76 MEVEQVLESARK-AKAAGSTRFCM-GAAWKNPHERDMPYLEQMVQGVKAMGL--ETCMTLGTLSESQAQRLANAGLDYYN 151 (345)
T ss_pred CCHHHHHHHHHH-HHHcCCCEEEE-EecCCCCCcchHHHHHHHHHHHHhCCC--EEEEeCCcCCHHHHHHHHHcCCCEEe
Confidence 678888888765 55789988733 3332222 2345666777777777664 344554 6677888775541
Q ss_pred -CceEEeeecCcc-c-cc--hhhhHHHHHHHhCCeEEecccCccc
Q 025500 177 -PITAVQMEWSLW-T-RD--IEEEIIPLCRELGIGIVPYSPLGRG 216 (252)
Q Consensus 177 -~~~~~q~~~~~~-~-~~--~~~~l~~~~~~~gi~v~a~spl~~G 216 (252)
.++...--|.-. . .. .--+.++.+++.|+.+-+---++-|
T Consensus 152 ~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~Glg 196 (345)
T PRK15108 152 HNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLG 196 (345)
T ss_pred eccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCC
Confidence 111110001111 1 11 1156788888889866555555544
No 415
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=20.70 E-value=5.6e+02 Score=23.26 Aligned_cols=54 Identities=9% Similarity=0.054 Sum_probs=33.0
Q ss_pred CCHHHHHHHhhc-CCceEEeeecCccccc-hhhhHHHHHHHhCCeEEecccCcccc
Q 025500 164 ASPGTIRRAHAV-HPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRGF 217 (252)
Q Consensus 164 ~~~~~l~~~~~~-~~~~~~q~~~~~~~~~-~~~~l~~~~~~~gi~v~a~spl~~G~ 217 (252)
.+.+.+++++.. ....++..+.|+.-.- ..+++.+.|+++|+.++.=..++.|.
T Consensus 130 ~d~~~l~~~l~~~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~~ 185 (418)
T TIGR01326 130 DDPEEFEKAIDENTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATPY 185 (418)
T ss_pred CCHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCchhh
Confidence 366777776542 2333334334442211 23789999999999998877776553
No 416
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.65 E-value=6.3e+02 Score=22.77 Aligned_cols=88 Identities=15% Similarity=0.190 Sum_probs=55.4
Q ss_pred EEEccCCCC------------CCCHHHHHHHHHH-HHHcC---CccEEEcc--CCCHHHHHHHh---hcCCceEEeeecC
Q 025500 128 LYYQHRVDT------------SVPIEETIGEMKK-LVEEG---KIKYIGLS--EASPGTIRRAH---AVHPITAVQMEWS 186 (252)
Q Consensus 128 l~~lh~~~~------------~~~~~~~~~~L~~-l~~~G---~ir~iGvs--~~~~~~l~~~~---~~~~~~~~q~~~~ 186 (252)
.+.||.++. ..+++++++++.+ ..+.| +|+++=+. |.+.+.++++. ...+..++-++||
T Consensus 237 aiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn 316 (368)
T PRK14456 237 AVSLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYN 316 (368)
T ss_pred EEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeec
Confidence 456787643 2356788888875 44555 24455444 34444454444 3345677788888
Q ss_pred ccccc-----h---hhhHHHHHHHhCCeEEecccCcc
Q 025500 187 LWTRD-----I---EEEIIPLCRELGIGIVPYSPLGR 215 (252)
Q Consensus 187 ~~~~~-----~---~~~l~~~~~~~gi~v~a~spl~~ 215 (252)
++... . ...+.+..+++|+.|......+.
T Consensus 317 ~~~~~~~~~ps~e~i~~F~~~L~~~Gi~vtvR~~~G~ 353 (368)
T PRK14456 317 SIVNIKFEPVCSSTRERFRDRLLDAGLQVTVRKSYGT 353 (368)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCc
Confidence 86542 1 15677778899999999888754
No 417
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.61 E-value=5.6e+02 Score=23.24 Aligned_cols=95 Identities=14% Similarity=0.106 Sum_probs=57.3
Q ss_pred CCCEEEEeccCccCC------CCcccccCCChHHHHHHHHHHHHHcCC-------------CcccEEEccCCCC-CCCHH
Q 025500 82 REKIQVATKFGIAGI------GVAGVIVKGAPDYVRSCCEASLKRLDV-------------DYIDLYYQHRVDT-SVPIE 141 (252)
Q Consensus 82 R~~~~i~tK~~~~~~------~~~~~~~~~~~~~i~~~~~~sL~~Lg~-------------d~iDl~~lh~~~~-~~~~~ 141 (252)
|.-+.|||.+|=.-. +..+..+++++..|..|+....+.|+. ..+.=+.+-...+ -...+
T Consensus 106 r~TlCvSSQvGC~mgC~FCaTG~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMGMGEPL~Nyd 185 (371)
T PRK14461 106 RATVCVSTQAGCGMGCVFCATGTLGLLRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMGMGEPFANYD 185 (371)
T ss_pred CceEEEEccCCccCCCCcccCCCCCcccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEccCCchhhHH
Confidence 566777777764321 113457889999999999888766632 1122222222222 22346
Q ss_pred HHHHHHHHHHHc-CC---ccEEEccCCCH-HHHHHHhhcC
Q 025500 142 ETIGEMKKLVEE-GK---IKYIGLSEASP-GTIRRAHAVH 176 (252)
Q Consensus 142 ~~~~~L~~l~~~-G~---ir~iGvs~~~~-~~l~~~~~~~ 176 (252)
.++++++.+.+. |. -|.|=||+... ..++++.+..
T Consensus 186 nV~~ai~il~d~~g~~is~R~ITVST~Givp~I~~la~~~ 225 (371)
T PRK14461 186 RWWQAVERLHDPQGFNLGARSMTVSTVGLVKGIRRLANER 225 (371)
T ss_pred HHHHHHHHhcCccccCcCCCceEEEeecchhHHHHHHhcc
Confidence 788898888765 22 46777888765 3577776643
No 418
>PRK06361 hypothetical protein; Provisional
Probab=20.58 E-value=4.5e+02 Score=21.09 Aligned_cols=154 Identities=13% Similarity=0.070 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHH---HHHHhcC-CCCCEEE--EeccCccCCCCcccccCCChHHHHHHH
Q 025500 41 EDGISMIKHAFSKGITFFDTADVYGQNANEVLL---GKALKQL-PREKIQV--ATKFGIAGIGVAGVIVKGAPDYVRSCC 114 (252)
Q Consensus 41 ~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~i---g~~l~~~-~R~~~~i--~tK~~~~~~~~~~~~~~~~~~~i~~~~ 114 (252)
....+++++|.+.|+..|=.+++.........+ -+..+.. ...++.| ..-+.. ..++.+ ..+
T Consensus 10 ~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~GiE~~~-----------~~~~~~-~~~ 77 (212)
T PRK06361 10 LIPSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEELELYWDIEVIPGVELTH-----------VPPKLI-PKL 77 (212)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEEEcc-----------cCchhh-chH
Confidence 346899999999999988888776421111111 1111111 1113333 222221 112222 334
Q ss_pred HHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCC-CHHHHHHHhhcCC-ceEEeeecCccccch
Q 025500 115 EASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-SPGTIRRAHAVHP-ITAVQMEWSLWTRDI 192 (252)
Q Consensus 115 ~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~-~~~~q~~~~~~~~~~ 192 (252)
...+.+++ .|+..+|......+.. ... -..+.+.|.+.-||=-+. ..+.++.+.+... +.++ .....+..
T Consensus 78 ~~~~~~~~---~~~~svH~~~~~~~~~-~~~-~~~a~~~~~~dvlaHpd~~~~~~~~~~~~~~~~lEin---~~~~~~~~ 149 (212)
T PRK06361 78 AKKARDLG---AEIVVVHGETIVEPVE-EGT-NLAAIECEDVDILAHPGLITEEEAELAAENGVFLEIT---ARKGHSLT 149 (212)
T ss_pred HHHHHHCC---CEEEEECCCCcchhhh-hhh-HHHHHhCCCCcEecCcchhhHHHHHHHHHcCeEEEEE---CCCCcccc
Confidence 45666665 4667899543222211 111 145677887766654432 2333444443321 2222 11112223
Q ss_pred hhhHHHHHHHhCCeEEecccCc
Q 025500 193 EEEIIPLCRELGIGIVPYSPLG 214 (252)
Q Consensus 193 ~~~l~~~~~~~gi~v~a~spl~ 214 (252)
...+++.|++.|+.++..|.-.
T Consensus 150 ~~~~l~~a~~~gi~vv~~SDaH 171 (212)
T PRK06361 150 NGHVARIAREAGAPLVINTDTH 171 (212)
T ss_pred hHHHHHHHHHhCCcEEEECCCC
Confidence 3679999999999987766544
No 419
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=20.55 E-value=7.3e+02 Score=23.45 Aligned_cols=131 Identities=18% Similarity=0.197 Sum_probs=68.8
Q ss_pred HHHHHHHHHhc---CCCCCE-EEEeccCccCCCCcccccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCC----H
Q 025500 69 NEVLLGKALKQ---LPREKI-QVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVP----I 140 (252)
Q Consensus 69 se~~ig~~l~~---~~R~~~-~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~----~ 140 (252)
+++.+-+++++ ..+-++ +|.+-. .++-+-+.++...++++.+ +.++.++.+..... .
T Consensus 69 ~~ekL~~aI~~~~~~~~P~~I~V~sTC--------------~seiIGdDi~~v~~~~~~~-~~Vi~v~t~gf~~~~~~G~ 133 (519)
T PRK02910 69 TAELLKDTLRRADERFQPDLIVVGPSC--------------TAELLQEDLGGLAKHAGLP-IPVLPLELNAYRVKENWAA 133 (519)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEeCCc--------------HHHHhccCHHHHHHHhCCC-CCEEEEecCCcccccchHH
Confidence 56667777776 123334 444433 2444555666666666653 67899888865433 2
Q ss_pred HHHHHHHH-HHH-----------HcCCccEEEccC------CCHHHHHHHhhcCCceEEeee----------------cC
Q 025500 141 EETIGEMK-KLV-----------EEGKIKYIGLSE------ASPGTIRRAHAVHPITAVQME----------------WS 186 (252)
Q Consensus 141 ~~~~~~L~-~l~-----------~~G~ir~iGvs~------~~~~~l~~~~~~~~~~~~q~~----------------~~ 186 (252)
+.++++|- .+. +.+.|.-||.++ .+...++++++...+.++.+. +|
T Consensus 134 ~~al~~lv~~~~~~~~~~~~~~~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v~p~g~s~~di~~l~~A~~n 213 (519)
T PRK02910 134 DETFYQLVRALAKKAAELPQPKTARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVVAPLGASPADLKRLPAAWFN 213 (519)
T ss_pred HHHHHHHHHHHhhhcccccccCCCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCcEE
Confidence 22333222 122 124588888764 233556666666555554431 22
Q ss_pred ccccc-hhhhHHHHH-HHhCCeEEecccCc
Q 025500 187 LWTRD-IEEEIIPLC-RELGIGIVPYSPLG 214 (252)
Q Consensus 187 ~~~~~-~~~~l~~~~-~~~gi~v~a~spl~ 214 (252)
+.... ....+.++. ++.|++++...|++
T Consensus 214 ivl~~~~g~~~A~~Lee~fGiP~i~~~PiG 243 (519)
T PRK02910 214 VVLYREIGESAARYLEREFGQPYVKTVPIG 243 (519)
T ss_pred EEeCHHHHHHHHHHHHHHhCCccccccccc
Confidence 22111 112343443 36689988877765
No 420
>PLN02522 ATP citrate (pro-S)-lyase
Probab=20.55 E-value=1.9e+02 Score=28.07 Aligned_cols=29 Identities=34% Similarity=0.160 Sum_probs=22.7
Q ss_pred CcHHHHHHHHHhcCCCCCEEEEeccCccC
Q 025500 67 NANEVLLGKALKQLPREKIQVATKFGIAG 95 (252)
Q Consensus 67 g~se~~ig~~l~~~~R~~~~i~tK~~~~~ 95 (252)
+..|+.+-+++++..+.+-+|.-|.|...
T Consensus 234 g~~e~~f~ea~~~a~~~KPVVa~kaGrsa 262 (608)
T PLN02522 234 GRDEYSLVEALKQGKVSKPVVAWVSGTCA 262 (608)
T ss_pred chhHHHHHHHHHHhcCCCCEEEEeccCCC
Confidence 45778888888875578888889988765
No 421
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=20.55 E-value=5.2e+02 Score=21.72 Aligned_cols=75 Identities=19% Similarity=0.254 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCCCc-HHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQNA-NEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEAS 117 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~-se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~s 117 (252)
+.++..++.+.+.++|..|+=|+-.+..+. ..+-+ +.+++.-..++=| |.. +.. .+.+....-++..
T Consensus 138 t~ee~~~A~~i~~~aGAdFVKTSTGf~~~gAT~edv-~lM~~~vg~~vgv--KaS-------GGI--rt~eda~~~i~ag 205 (228)
T COG0274 138 TDEEKRKACEIAIEAGADFVKTSTGFSAGGATVEDV-KLMKETVGGRVGV--KAS-------GGI--RTAEDAKAMIEAG 205 (228)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHH-HHHHHHhccCcee--ecc-------CCc--CCHHHHHHHHHHh
Confidence 667789999999999999999998665443 33332 3333311111111 111 111 3688889999999
Q ss_pred HHHcCCCc
Q 025500 118 LKRLDVDY 125 (252)
Q Consensus 118 L~~Lg~d~ 125 (252)
..|+|++.
T Consensus 206 a~RiGtSs 213 (228)
T COG0274 206 ATRIGTSS 213 (228)
T ss_pred HHHhcccc
Confidence 99999853
No 422
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=20.53 E-value=2.3e+02 Score=25.26 Aligned_cols=55 Identities=9% Similarity=0.083 Sum_probs=37.0
Q ss_pred CCHHHHHHHhh-cCCceEEeeecCccccch-hhhHHHHHHHhCCeEEecccCccccC
Q 025500 164 ASPGTIRRAHA-VHPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRGFF 218 (252)
Q Consensus 164 ~~~~~l~~~~~-~~~~~~~q~~~~~~~~~~-~~~l~~~~~~~gi~v~a~spl~~G~L 218 (252)
.+.+.+++++. ..+..++..+-|+.-... -+.+.+.|+++|+.++.=..++.+.+
T Consensus 124 ~d~~~l~~~i~~~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~~ 180 (364)
T PRK07269 124 NTEEELIAAIEEDTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIY 180 (364)
T ss_pred CCHHHHHHhcCcCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCccccc
Confidence 35677776663 234445555666644322 27899999999999998888776543
No 423
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.52 E-value=4.9e+02 Score=21.43 Aligned_cols=53 Identities=17% Similarity=0.184 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhcCCCCCEEEEeccCc
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGI 93 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~ 93 (252)
+.+++.++.+..++.|++.++..-... ...+.+.+.-+..++-.+-.-|++-.
T Consensus 25 ~~~~a~~i~~al~~~Gi~~iEitl~~~--~~~~~I~~l~~~~p~~~IGAGTVl~~ 77 (212)
T PRK05718 25 KLEDAVPLAKALVAGGLPVLEVTLRTP--AALEAIRLIAKEVPEALIGAGTVLNP 77 (212)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCc--cHHHHHHHHHHHCCCCEEEEeeccCH
Confidence 789999999999999999999774333 36666755444355444555566544
No 424
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=20.49 E-value=6.9e+02 Score=23.16 Aligned_cols=113 Identities=14% Similarity=0.115 Sum_probs=57.3
Q ss_pred cCCcCCCcHHHHHHHHHhc----CC-CCCEEEEeccCccCCCCcccccCCChHHHHHHHHHHHH-HcCCCcccEEEccCC
Q 025500 61 ADVYGQNANEVLLGKALKQ----LP-REKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASLK-RLDVDYIDLYYQHRV 134 (252)
Q Consensus 61 a~~Yg~g~se~~ig~~l~~----~~-R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~-~Lg~d~iDl~~lh~~ 134 (252)
.-.|| .|+.+-++|++ .+ .+=++|.|-....-.+ -+.+.+.+.+++-++ ...--.+.++.++.|
T Consensus 65 d~VfG---G~~~L~~~I~~~~~~~~~p~~I~V~tTC~~eiIG-------DDi~~vv~~~~~~~~~e~~~~~~~vi~v~tp 134 (454)
T cd01973 65 SAVFG---GAKRVEEGVLVLARRYPDLRVIPIITTCSTEIIG-------DDIEGVIRKLNEALKEEFPDREVHLIPVHTP 134 (454)
T ss_pred ceEEC---cHHHHHHHHHHHHHhcCCCCEEEEECCchHhhhc-------cCHHHHHHHHHhhhhhccCCCCCeEEEeeCC
Confidence 34677 67777778876 22 2335666554432211 123333333332221 110013688999988
Q ss_pred CCCCCH-HHHHHHHHHHHH--------cCCccEEEccC--CCHHHHHHHhhcCCceEEee
Q 025500 135 DTSVPI-EETIGEMKKLVE--------EGKIKYIGLSE--ASPGTIRRAHAVHPITAVQM 183 (252)
Q Consensus 135 ~~~~~~-~~~~~~L~~l~~--------~G~ir~iGvs~--~~~~~l~~~~~~~~~~~~q~ 183 (252)
+..-.. .....+++.+.+ .++|.-||-.+ .+.+.++++++...+.++.+
T Consensus 135 gF~Gs~~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v~~~ 194 (454)
T cd01973 135 SFKGSMVTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEANIL 194 (454)
T ss_pred CcCCCHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEEe
Confidence 775432 233333433332 36688786433 33456777776655555544
No 425
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=20.43 E-value=6e+02 Score=22.46 Aligned_cols=58 Identities=16% Similarity=0.165 Sum_probs=38.3
Q ss_pred ccCCCHHHHHHHhhc-CCceEEeeecCccccch-hhhHHHHHHHhCCeEEecccCccccC
Q 025500 161 LSEASPGTIRRAHAV-HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRGFF 218 (252)
Q Consensus 161 vs~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~-~~~l~~~~~~~gi~v~a~spl~~G~L 218 (252)
+...+.+.+++++.. ....++....|+.-.-. .+++.+.|+++|+.++.-..++.|.+
T Consensus 110 v~~~d~~~l~~~i~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~ 169 (369)
T cd00614 110 VDPDDPEALEAAIKPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYL 169 (369)
T ss_pred eCCCCHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhc
Confidence 333456777777643 33444444555543222 37899999999999999888877765
No 426
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.37 E-value=6.1e+02 Score=22.51 Aligned_cols=88 Identities=13% Similarity=0.066 Sum_probs=53.4
Q ss_pred EEEccCCCCC-----------CCHHHHHHHHHHHHHcCC---ccEEEcc--CCCHHHHHHHh---hcCCceEEeeecCcc
Q 025500 128 LYYQHRVDTS-----------VPIEETIGEMKKLVEEGK---IKYIGLS--EASPGTIRRAH---AVHPITAVQMEWSLW 188 (252)
Q Consensus 128 l~~lh~~~~~-----------~~~~~~~~~L~~l~~~G~---ir~iGvs--~~~~~~l~~~~---~~~~~~~~q~~~~~~ 188 (252)
.+.||.++++ .+++++++++..+.+.|+ ++++=+. |.+.+.++++. +..+..++-++||+.
T Consensus 207 aiSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~~rri~ieyvLI~GvNDseeda~~La~llk~l~~~vnlI~~N~~ 286 (336)
T PRK14470 207 CISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAALRGRVTLEYVMISGVNVGEEDAAALGRLLAGIPVRLNPIAVNDA 286 (336)
T ss_pred EEecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhCCCeEEEEEEEecccCCHHHHHHHHHHHhcCCCeEEEeccCCC
Confidence 3567887542 356788888888887654 2344333 34455555544 435568888899984
Q ss_pred cc----chh---hhHHHHH--HHhCCeEEecccCcc
Q 025500 189 TR----DIE---EEIIPLC--RELGIGIVPYSPLGR 215 (252)
Q Consensus 189 ~~----~~~---~~l~~~~--~~~gi~v~a~spl~~ 215 (252)
.. ..+ ..+.+.. +++|+.+......+.
T Consensus 287 ~~~~~~p~~~~i~~f~~~l~~~~~g~~~~~R~~~G~ 322 (336)
T PRK14470 287 TGRYRPPDEDEWNAFRDALARELPGTPVVRRYSGGQ 322 (336)
T ss_pred CCCccCCCHHHHHHHHHHHHHccCCeEEEEECCCCC
Confidence 43 222 3344455 356898888777654
No 427
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=20.35 E-value=3.8e+02 Score=23.56 Aligned_cols=148 Identities=11% Similarity=0.088 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHCCCCEEe-CcCCcCCCcHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHHH
Q 025500 40 EEDGISMIKHAFSKGITFFD-TADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASL 118 (252)
Q Consensus 40 ~~~~~~~l~~A~~~Gin~~D-ta~~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 118 (252)
.+.+.++|++..+.|+.++= |+..|. .+-..+++...+..+|+.--...... .+ +.+ . ..
T Consensus 20 ~~~a~~aL~~Lk~~GI~vVlaTGRt~~------ev~~l~~~Lgl~~p~I~eNGA~I~~p-~~----~~~----~---~~- 80 (302)
T PRK12702 20 YGAARQALAALERRSIPLVLYSLRTRA------QLEHLCRQLRLEHPFICEDGSAIYVP-EH----YFP----A---GI- 80 (302)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCCHH------HHHHHHHHhCCCCeEEEeCCcEEEEc-cc----ccc----c---cc-
Confidence 35688999999999999765 444442 23333344444445665554432210 00 000 0 00
Q ss_pred HHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHhhcCCce---EEeeecC---ccccch
Q 025500 119 KRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPGTIRRAHAVHPIT---AVQMEWS---LWTRDI 192 (252)
Q Consensus 119 ~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~---~~q~~~~---~~~~~~ 192 (252)
...+....|-|.+... ..+..++...|.+++++-..+..|+++++.+.+.++.....-. ..|=+|| +|..+
T Consensus 81 ~~~~~~~~~~~~~~~l--g~~y~~ir~~L~~l~~~~~~~f~gF~d~t~~ei~~~TGL~~~~A~~A~~Re~SEp~~w~~~- 157 (302)
T PRK12702 81 LDEQWQHRPPYYVCAL--GLPYPCLRHILQQVRQDSHLDLIGFGDWTASELAAATGIPLEEAERAQKREYSEIFSYSGD- 157 (302)
T ss_pred cccccccCCCceEEec--CCCHHHHHHHHHHHHHHhCCCceehhhCCHHHHHHHhCcCHHHHHHHHhccCCcceEecCC-
Confidence 0001111122222211 2346678889999999999999999999999988875541100 0011121 12222
Q ss_pred hhhHHHHHHHhCCeEEe
Q 025500 193 EEEIIPLCRELGIGIVP 209 (252)
Q Consensus 193 ~~~l~~~~~~~gi~v~a 209 (252)
+..+.+.++++|+.++-
T Consensus 158 ~~~~~~~~~~~g~~~~~ 174 (302)
T PRK12702 158 PARLREAFAQQEANLTQ 174 (302)
T ss_pred HHHHHHHHHHcCCeEEe
Confidence 23458889999997764
No 428
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=20.31 E-value=54 Score=26.48 Aligned_cols=19 Identities=37% Similarity=0.326 Sum_probs=12.9
Q ss_pred HHHHHcCCCcccEEEccCC
Q 025500 116 ASLKRLDVDYIDLYYQHRV 134 (252)
Q Consensus 116 ~sL~~Lg~d~iDl~~lh~~ 134 (252)
+.|+.||+||||==-+=.|
T Consensus 87 qiLealgVD~IDESEVLTp 105 (208)
T PF01680_consen 87 QILEALGVDYIDESEVLTP 105 (208)
T ss_dssp HHHHHTT-SEEEEETTS--
T ss_pred hhHHHhCCceecccccccc
Confidence 6799999999996555444
No 429
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=20.29 E-value=3.9e+02 Score=20.64 Aligned_cols=54 Identities=13% Similarity=0.112 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEeCcCCcCCCcHHHHHHHHHhcCCCCCEEEEeccCccCCCCcccccCCChHHHHHHHHHHH
Q 025500 39 SEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGVAGVIVKGAPDYVRSCCEASL 118 (252)
Q Consensus 39 ~~~~~~~~l~~A~~~Gin~~Dta~~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL 118 (252)
..-.+++.+..++..-... ++..+++|..|-+... .+.+.+.+++...|
T Consensus 64 ~RNRiKR~lRE~fR~~~~~----------------------l~~~DiVviar~~~~~---------~~~~~l~~~l~~LL 112 (145)
T PRK04820 64 GRNRIKRVLREAMRQLLPE----------------------LAPGDYVVVARSAAAK---------ASNPQLRDAFLRLL 112 (145)
T ss_pred hHHHHHHHHHHHHHHhhhc----------------------cCCCCEEEEEeCCccc---------CCHHHHHHHHHHHH
Confidence 5567777777777632111 2233677777766443 57889999999999
Q ss_pred HHcCC
Q 025500 119 KRLDV 123 (252)
Q Consensus 119 ~~Lg~ 123 (252)
++++.
T Consensus 113 ~k~~~ 117 (145)
T PRK04820 113 RRAGA 117 (145)
T ss_pred HHhCc
Confidence 99875
No 430
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=20.28 E-value=5.7e+02 Score=22.07 Aligned_cols=99 Identities=16% Similarity=0.145 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHcCCccEEEccCC-CHHHHHHHhhcCCceEEeeec
Q 025500 107 PDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-SPGTIRRAHAVHPITAVQMEW 185 (252)
Q Consensus 107 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~~~ 185 (252)
++.+.+.++...+. +-+.+.=+-+...+...+.++....++..++.|.--.+=++.. +.+.+..+++...++. +..
T Consensus 140 ~~~~~~~~~~~~~~-~~~~vvg~~l~~~~~~~~~~~~~~~~~~A~~~g~~v~~H~~E~~~~~~~~~a~~~~g~~~--i~H 216 (325)
T cd01320 140 PESAQETLELALKY-RDKGVVGFDLAGDEVGFPPEKFVRAFQRAREAGLRLTAHAGEAGGPESVRDALDLLGAER--IGH 216 (325)
T ss_pred HHHHHHHHHHHHhc-cCCCEEEeecCCCCCCCCHHHHHHHHHHHHHCCCceEEeCCCCCCHHHHHHHHHHcCCcc--cch
Confidence 45566666655443 2222222222222222345566677777888877555555432 2344444444222211 100
Q ss_pred CccccchhhhHHHHHHHhCCeEEe
Q 025500 186 SLWTRDIEEEIIPLCRELGIGIVP 209 (252)
Q Consensus 186 ~~~~~~~~~~l~~~~~~~gi~v~a 209 (252)
.. .-...++.++..+++|+.|..
T Consensus 217 ~~-~l~~~~~~~~~l~~~gi~v~~ 239 (325)
T cd01320 217 GI-RAIEDPELVKRLAERNIPLEV 239 (325)
T ss_pred hh-ccCccHHHHHHHHHcCCeEEE
Confidence 00 001124688899999988753
No 431
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.23 E-value=6.3e+02 Score=22.57 Aligned_cols=135 Identities=12% Similarity=-0.022 Sum_probs=74.1
Q ss_pred CCEEEEeccCccCC------CCcccccCCChHHHHHHHHHHHHHcCCCcccEEEccCCCCCCCHHHHHHHHHHHHHc-C-
Q 025500 83 EKIQVATKFGIAGI------GVAGVIVKGAPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEE-G- 154 (252)
Q Consensus 83 ~~~~i~tK~~~~~~------~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~L~~l~~~-G- 154 (252)
.-+-|||.+|=.-. ...+...+.+...+.+++-..-+.++....-++++-.-++-...+.++++++.+++. |
T Consensus 105 ~t~CvSsQvGC~m~C~FC~tg~~g~~rnlta~EI~~qv~~~~~~~~~~~~niVFmGmGEPL~N~d~V~~~~~~l~~~~~~ 184 (342)
T PRK14465 105 KTICISSQIGCTLNCKFCATAKLEFQGNLKAHEIVDQVLQVEKIVGDRATNVVFMGMGEPMHNYFNVIRAASILHDPDAF 184 (342)
T ss_pred eEEEEEecCCCCCCCCCCcCCCCCccCCCCHHHHHHHHHHHHHhcCCCceEEEEEcCCcchhhHHHHHHHHHHHhChhhh
Confidence 44666665552211 112345678899999998876666664444455544333333456788888888775 2
Q ss_pred --CccEEEccCCCH-HHHHHHhhcCCceEEeeecCcc-----------ccc-hh----hhHHHHHHHhCCeEEecccCcc
Q 025500 155 --KIKYIGLSEASP-GTIRRAHAVHPITAVQMEWSLW-----------TRD-IE----EEIIPLCRELGIGIVPYSPLGR 215 (252)
Q Consensus 155 --~ir~iGvs~~~~-~~l~~~~~~~~~~~~q~~~~~~-----------~~~-~~----~~l~~~~~~~gi~v~a~spl~~ 215 (252)
.-+.|-||+... ..+.++.+......+.+.+|-- ++. .. ..+.+++++.+..|..--++-.
T Consensus 185 ~~~~r~itvST~G~~~~i~~l~~~~~~~~LaiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~ 264 (342)
T PRK14465 185 NLGAKRITISTSGVVNGIRRFIENKEPYNFAISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIP 264 (342)
T ss_pred cCCCCeEEEeCCCchHHHHHHHhhccCceEEEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEEC
Confidence 456888888765 4555555322112233333321 111 11 3444566676777765555554
Q ss_pred cc
Q 025500 216 GF 217 (252)
Q Consensus 216 G~ 217 (252)
|.
T Consensus 265 Gv 266 (342)
T PRK14465 265 GV 266 (342)
T ss_pred Cc
Confidence 53
No 432
>PRK12569 hypothetical protein; Provisional
Probab=20.21 E-value=4.4e+02 Score=22.39 Aligned_cols=83 Identities=13% Similarity=0.238 Sum_probs=50.5
Q ss_pred eecccccCCCCCCCCCHHHHHHHHHHH-HHCCCCEEeCcCCcCCCcHHHHHHHHHhcCCCCCEEEEeccCccCCCC-ccc
Q 025500 24 GYGCMNLSGGYSSPVSEEDGISMIKHA-FSKGITFFDTADVYGQNANEVLLGKALKQLPREKIQVATKFGIAGIGV-AGV 101 (252)
Q Consensus 24 glG~~~~g~~~~~~~~~~~~~~~l~~A-~~~Gin~~Dta~~Yg~g~se~~ig~~l~~~~R~~~~i~tK~~~~~~~~-~~~ 101 (252)
+||.|.+|. . .+++...++..| +.+|. |.| ....+.+.++-.....|.|...-++++... +..
T Consensus 14 sfG~~~~g~----~-~D~~lmp~ItsaNIACG~-------HAG---Dp~~M~~tv~lA~~~~V~IGAHPsyPD~~gFGRr 78 (245)
T PRK12569 14 GFGPWRIGD----G-VDEALMPLISSANIATGF-------HAG---DPNIMRRTVELAKAHGVGIGAHPGFRDLVGFGRR 78 (245)
T ss_pred CCCCcCCCC----c-cHHHHHHHhhhHHHhccc-------cCC---CHHHHHHHHHHHHHcCCEeccCCCCCcCCCCCCC
Confidence 788888762 0 156666666665 33344 666 456666666655667777777776655321 222
Q ss_pred ccCCChHHHHHHHHHHHHHc
Q 025500 102 IVKGAPDYVRSCCEASLKRL 121 (252)
Q Consensus 102 ~~~~~~~~i~~~~~~sL~~L 121 (252)
.-+.+++.+++.+...+..|
T Consensus 79 ~m~~s~~el~~~v~yQigaL 98 (245)
T PRK12569 79 HINASPQELVNDVLYQLGAL 98 (245)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 33567888888776666555
No 433
>PRK11059 regulatory protein CsrD; Provisional
Probab=20.18 E-value=5.5e+02 Score=24.78 Aligned_cols=70 Identities=10% Similarity=0.068 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHHcCCccEEEccCCCH--HHHHHHhhcCCceEEeeecCcccc--------chhhhHHHHHHHhCCeEE
Q 025500 139 PIEETIGEMKKLVEEGKIKYIGLSEASP--GTIRRAHAVHPITAVQMEWSLWTR--------DIEEEIIPLCRELGIGIV 208 (252)
Q Consensus 139 ~~~~~~~~L~~l~~~G~ir~iGvs~~~~--~~l~~~~~~~~~~~~q~~~~~~~~--------~~~~~l~~~~~~~gi~v~ 208 (252)
+.+.+...++.|++.|- .|++.+|+. ..+..+ ...+++.+-++-++... ..-..++..|+..|+.|+
T Consensus 531 ~~~~~~~~l~~L~~~G~--~iaiddfG~g~~s~~~L-~~l~~d~iKid~s~v~~i~~~~~~~~~v~sli~~a~~~~i~vi 607 (640)
T PRK11059 531 HISRLRPVLRMLRGLGC--RLAVDQAGLTVVSTSYI-KELNVELIKLHPSLVRNIHKRTENQLFVRSLVGACAGTETQVF 607 (640)
T ss_pred CHHHHHHHHHHHHHCCC--EEEEECCCCCcccHHHH-HhCCCCEEEECHHHHhhhhcCchhHHHHHHHHHHHHHCCCeEE
Confidence 34567778888888887 444444432 122222 22467777665443221 112778999999999999
Q ss_pred ecc
Q 025500 209 PYS 211 (252)
Q Consensus 209 a~s 211 (252)
|-.
T Consensus 608 Aeg 610 (640)
T PRK11059 608 ATG 610 (640)
T ss_pred EEE
Confidence 864
No 434
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=20.08 E-value=2.3e+02 Score=28.91 Aligned_cols=56 Identities=11% Similarity=0.082 Sum_probs=43.0
Q ss_pred HHHHHHHHHcCCCc--ccEEEccCCCCCCC---HHHHHHHHHHHHHcCCccEEEccCCCHHHH
Q 025500 112 SCCEASLKRLDVDY--IDLYYQHRVDTSVP---IEETIGEMKKLVEEGKIKYIGLSEASPGTI 169 (252)
Q Consensus 112 ~~~~~sL~~Lg~d~--iDl~~lh~~~~~~~---~~~~~~~L~~l~~~G~ir~iGvs~~~~~~l 169 (252)
=++.-+|..+-..+ ++++++.-|....+ .+.++++|+++... ++.|||-+|..+..
T Consensus 826 LalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~--~~qiiIISH~eel~ 886 (908)
T COG0419 826 LALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD--GRQIIIISHVEELK 886 (908)
T ss_pred HHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc--CCeEEEEeChHHHH
Confidence 34555666665566 99999999987665 45678888888888 89999999986544
Done!