BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025502
(252 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HX5|A Chain A, Crystal Structure Of M. Tuberculosis Chaperonin-10
pdb|1HX5|B Chain B, Crystal Structure Of M. Tuberculosis Chaperonin-10
pdb|1HX5|C Chain C, Crystal Structure Of M. Tuberculosis Chaperonin-10
pdb|1HX5|D Chain D, Crystal Structure Of M. Tuberculosis Chaperonin-10
pdb|1HX5|E Chain E, Crystal Structure Of M. Tuberculosis Chaperonin-10
pdb|1HX5|F Chain F, Crystal Structure Of M. Tuberculosis Chaperonin-10
pdb|1HX5|G Chain G, Crystal Structure Of M. Tuberculosis Chaperonin-10
pdb|1P3H|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|C Chain C, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|D Chain D, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|E Chain E, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|F Chain F, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|G Chain G, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|H Chain H, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|I Chain I, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|J Chain J, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|K Chain K, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|L Chain L, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|M Chain M, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
pdb|1P3H|N Chain N, Crystal Structure Of The Mycobacterium Tuberculosis
Chaperonin 10 Tetradecamer
Length = 99
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 69/96 (71%), Gaps = 2/96 (2%)
Query: 158 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRK-PLSIA 216
++KPL D++ ++ EAE TTA GL++ + +KEKP G V+AVGPG DE+G ++ PL +A
Sbjct: 4 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVA 63
Query: 217 PGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 252
G+TV+YSKY G + K +G Y+ L A +V+AV+S
Sbjct: 64 EGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 98
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 60/94 (63%), Gaps = 2/94 (2%)
Query: 60 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKT--VGKAKLDISVK 117
+IKPL D++LV+ E T G+ +P A+ KPQ G VVAVG G+ G+ ++ + V
Sbjct: 4 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVA 63
Query: 118 PGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 151
G VIYSKY GTE+++NG +LIL DV+ ++
Sbjct: 64 EGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVV 97
>pdb|1LEP|A Chain A, Three-Dimensional Structure Of The Immunodominant Heat-
Shock Protein Chaperonin-10 Of Mycobacterium Leprae
pdb|1LEP|B Chain B, Three-Dimensional Structure Of The Immunodominant Heat-
Shock Protein Chaperonin-10 Of Mycobacterium Leprae
pdb|1LEP|C Chain C, Three-Dimensional Structure Of The Immunodominant Heat-
Shock Protein Chaperonin-10 Of Mycobacterium Leprae
pdb|1LEP|D Chain D, Three-Dimensional Structure Of The Immunodominant Heat-
Shock Protein Chaperonin-10 Of Mycobacterium Leprae
pdb|1LEP|E Chain E, Three-Dimensional Structure Of The Immunodominant Heat-
Shock Protein Chaperonin-10 Of Mycobacterium Leprae
pdb|1LEP|F Chain F, Three-Dimensional Structure Of The Immunodominant Heat-
Shock Protein Chaperonin-10 Of Mycobacterium Leprae
pdb|1LEP|G Chain G, Three-Dimensional Structure Of The Immunodominant Heat-
Shock Protein Chaperonin-10 Of Mycobacterium Leprae
Length = 99
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 64/95 (67%), Gaps = 2/95 (2%)
Query: 159 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEG-NRKPLSIAP 217
+KPL D++ ++ EAE T GL++ E +KEKP G V+AVGPG DE+G R P+ ++
Sbjct: 5 IKPLEDKILVQAGEAETMTPSGLVIPENAKEKPQEGTVVAVGPGRWDEDGAKRIPVDVSE 64
Query: 218 GNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 252
G+ V+YSKY G + K +G Y+ L A +V+AV+S
Sbjct: 65 GDIVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 98
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 58/93 (62%), Gaps = 2/93 (2%)
Query: 61 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKT--VGKAKLDISVKP 118
IKPL D++LV+ E T G+ +P A+ KPQ G VVAVG G+ G ++ + V
Sbjct: 5 IKPLEDKILVQAGEAETMTPSGLVIPENAKEKPQEGTVVAVGPGRWDEDGAKRIPVDVSE 64
Query: 119 GTQVIYSKYAGTELEFNGANHLILREDDVVGIL 151
G VIYSKY GTE+++NG +LIL DV+ ++
Sbjct: 65 GDIVIYSKYGGTEIKYNGEEYLILSARDVLAVV 97
>pdb|1WE3|O Chain O, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|P Chain P, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|Q Chain Q, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|R Chain R, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|S Chain S, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|T Chain T, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|U Chain U, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|OO Chain o, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|PP Chain p, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|QQ Chain q, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|RR Chain r, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|SS Chain s, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|TT Chain t, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|UU Chain u, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
Length = 100
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
Query: 59 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVK 117
T IKPLGDRV+VK E KT GGI LP A+ KPQ G+V+AVG G+ + ++ + VK
Sbjct: 6 TVIKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVK 65
Query: 118 PGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 152
G V+++KY GTE+E +G ++IL E D++ +L+
Sbjct: 66 EGDIVVFAKYGGTEIEIDGEEYVILSERDLLAVLQ 100
Score = 80.9 bits (198), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
Query: 159 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPG 218
+KPL DRV +K E E T GG++L + +KEKP G VIAVG G + E G R PL + G
Sbjct: 8 IKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEG 67
Query: 219 NTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 252
+ V+++KY G + + DG Y+ L +++AVL
Sbjct: 68 DIVVFAKYGGTEIE-IDGEEYVILSERDLLAVLQ 100
>pdb|1WNR|A Chain A, Crystal Structure Of The Cpn10 From Thermus Thermophilus
Hb8
pdb|1WNR|B Chain B, Crystal Structure Of The Cpn10 From Thermus Thermophilus
Hb8
pdb|1WNR|C Chain C, Crystal Structure Of The Cpn10 From Thermus Thermophilus
Hb8
pdb|1WNR|D Chain D, Crystal Structure Of The Cpn10 From Thermus Thermophilus
Hb8
pdb|1WNR|E Chain E, Crystal Structure Of The Cpn10 From Thermus Thermophilus
Hb8
pdb|1WNR|F Chain F, Crystal Structure Of The Cpn10 From Thermus Thermophilus
Hb8
pdb|1WNR|G Chain G, Crystal Structure Of The Cpn10 From Thermus Thermophilus
Hb8
Length = 94
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 64/93 (68%), Gaps = 1/93 (1%)
Query: 61 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPG 119
IKPLGDRV+VK E KT GGI LP A+ KPQ G+V+AVG G+ + ++ + VK G
Sbjct: 2 IKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEG 61
Query: 120 TQVIYSKYAGTELEFNGANHLILREDDVVGILE 152
V+++KY GTE+E +G ++IL E D++ +L+
Sbjct: 62 DIVVFAKYGGTEIEIDGEEYVILSERDLLAVLQ 94
Score = 80.5 bits (197), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
Query: 159 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPG 218
+KPL DRV +K E E T GG++L + +KEKP G VIAVG G + E G R PL + G
Sbjct: 2 IKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEG 61
Query: 219 NTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 252
+ V+++KY G + + DG Y+ L +++AVL
Sbjct: 62 DIVVFAKYGGTEIE-IDGEEYVILSERDLLAVLQ 94
>pdb|3NX6|A Chain A, Crystal Structure Of Co-Chaperonin, Groes (Xoo4289) From
Xanthomonas Oryzae Pv. Oryzae Kacc10331
Length = 95
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 65/94 (69%), Gaps = 3/94 (3%)
Query: 159 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPG-PLDEEGNRKPLSIAP 217
+KPL+DRV +K EA+E +AGG+++ +++KEK + G V+A+G G PLD P+ +
Sbjct: 3 IKPLHDRVVVKPIEADEVSAGGIVIPDSAKEKSTKGEVVAIGAGKPLDNGSLHAPV-VKV 61
Query: 218 GNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 251
G+ V+Y +YAG+ +K S+G Y LR +++AV+
Sbjct: 62 GDKVIYGQYAGSSYK-SEGVEYKVLREDDILAVI 94
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 60 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDIS-VKP 118
SIKPL DRV+VK +E + GGI +P +A+ K GEVVA+G GK + L VK
Sbjct: 2 SIKPLHDRVVVKPIEADEVSAGGIVIPDSAKEKSTKGEVVAIGAGKPLDNGSLHAPVVKV 61
Query: 119 GTQVIYSKYAGTELEFNGANHLILREDDVVGIL 151
G +VIY +YAG+ + G + +LREDD++ ++
Sbjct: 62 GDKVIYGQYAGSSYKSEGVEYKVLREDDILAVI 94
>pdb|1AON|O Chain O, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|P Chain P, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|Q Chain Q, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|R Chain R, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|S Chain S, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|T Chain T, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|U Chain U, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1GRU|O Chain O, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|P Chain P, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|Q Chain Q, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|R Chain R, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|S Chain S, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|T Chain T, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|U Chain U, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1PCQ|O Chain O, Crystal Structure Of Groel-Groes
pdb|1PCQ|P Chain P, Crystal Structure Of Groel-Groes
pdb|1PCQ|Q Chain Q, Crystal Structure Of Groel-Groes
pdb|1PCQ|R Chain R, Crystal Structure Of Groel-Groes
pdb|1PCQ|S Chain S, Crystal Structure Of Groel-Groes
pdb|1PCQ|T Chain T, Crystal Structure Of Groel-Groes
pdb|1PCQ|U Chain U, Crystal Structure Of Groel-Groes
pdb|1PF9|O Chain O, Groel-Groes-Adp
pdb|1PF9|P Chain P, Groel-Groes-Adp
pdb|1PF9|Q Chain Q, Groel-Groes-Adp
pdb|1PF9|R Chain R, Groel-Groes-Adp
pdb|1PF9|S Chain S, Groel-Groes-Adp
pdb|1PF9|T Chain T, Groel-Groes-Adp
pdb|1PF9|U Chain U, Groel-Groes-Adp
pdb|1SVT|O Chain O, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|P Chain P, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|Q Chain Q, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|R Chain R, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|S Chain S, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|T Chain T, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|U Chain U, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SX4|O Chain O, Groel-Groes-Adp7
pdb|1SX4|P Chain P, Groel-Groes-Adp7
pdb|1SX4|Q Chain Q, Groel-Groes-Adp7
pdb|1SX4|R Chain R, Groel-Groes-Adp7
pdb|1SX4|S Chain S, Groel-Groes-Adp7
pdb|1SX4|T Chain T, Groel-Groes-Adp7
pdb|1SX4|U Chain U, Groel-Groes-Adp7
pdb|2C7C|O Chain O, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|P Chain P, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|Q Chain Q, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|R Chain R, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|S Chain S, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|T Chain T, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|U Chain U, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7D|O Chain O, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|P Chain P, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|Q Chain Q, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|R Chain R, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|S Chain S, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|T Chain T, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|U Chain U, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
Length = 97
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 57/94 (60%)
Query: 158 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAP 217
+++PL+DRV +K E E +AGG++LT ++ K + G V+AVG G + E G KPL +
Sbjct: 2 NIRPLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVGNGRILENGEVKPLDVKV 61
Query: 218 GNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 251
G+ V+++ G + D + + S+++A++
Sbjct: 62 GDIVIFNDGYGVKSEKIDNEEVLIMSESDILAIV 95
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 60 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLD-ISVKP 118
+I+PL DRV+VK K VE K+ GGI L +A K GEV+AVG G+ + ++ + VK
Sbjct: 2 NIRPLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVGNGRILENGEVKPLDVKV 61
Query: 119 GTQVIYSKYAGTELE-FNGANHLILREDDVVGILE 152
G VI++ G + E + LI+ E D++ I+E
Sbjct: 62 GDIVIFNDGYGVKSEKIDNEEVLIMSESDILAIVE 96
>pdb|1O89|A Chain A, Crystal Structure Of E. Coli K-12 Yhdh
pdb|1O8C|A Chain A, Crystal Structure Of E. Coli K-12 Yhdh With Bound Nadph
pdb|1O8C|B Chain B, Crystal Structure Of E. Coli K-12 Yhdh With Bound Nadph
pdb|1O8C|C Chain C, Crystal Structure Of E. Coli K-12 Yhdh With Bound Nadph
pdb|1O8C|D Chain D, Crystal Structure Of E. Coli K-12 Yhdh With Bound Nadph
Length = 345
Score = 30.8 bits (68), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 89 AQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVV 148
A +PQ GE+V G VG + + K G QV+ +G E + H L+
Sbjct: 162 AGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVV--AVSGRE-----STHEYLKSLGAS 214
Query: 149 GILETDEIKDLKPLNDRVF 167
+L DE + +PL +V+
Sbjct: 215 RVLPRDEFAESRPLEKQVW 233
>pdb|3NX4|A Chain A, Crystal Structure Of The Yhdh Oxidoreductase From
Salmonella Enterica In Complex With Nadp
pdb|3NX4|B Chain B, Crystal Structure Of The Yhdh Oxidoreductase From
Salmonella Enterica In Complex With Nadp
Length = 324
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 89 AQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVV 148
A +PQ GEVV G VG + + K G QV + +G E + H L+
Sbjct: 141 AGIRPQDGEVVVTGASGGVGSTAVALLHKLGYQV--AAVSGRE-----STHGYLKSLGAN 193
Query: 149 GILETDEIKDLKPLNDRVF 167
IL DE + +PL +++
Sbjct: 194 RILSRDEFAESRPLEKQLW 212
>pdb|2H6O|A Chain A, Epstein Barr Virus Major Envelope Glycoprotein
Length = 470
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 11/108 (10%)
Query: 133 EFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEAS---KE 189
F+ ++ E D+ I+E EI + P +++ I + E G +LT S
Sbjct: 195 NFSVKTEMLGNEIDIECIMEDGEISQVLPGDNKFNITCSGYESHVPSGGILTSTSPVATP 254
Query: 190 KPSIGMVIAVGPGPLDEEGNRKPLSIAPG-NTVMYSKYAGNDFKGSDG 236
P G ++ P +P+S G N+++Y Y+GN K S G
Sbjct: 255 IPGTGYAYSLRLTP-------RPVSRFLGNNSILYVFYSGNGPKASGG 295
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 17/126 (13%)
Query: 103 EGKTVGKAKLDISVKPGTQVIYSKYAGTEL-EFNGANHLILREDDVVG--ILETDEIKDL 159
+ + G +LD+S P +++Y TEL E + +++ L+ V I + + +
Sbjct: 303 DCQAAGITELDLSQNP--KLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQDFSSVGKI 360
Query: 160 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGN 219
LN+ EAE G +T + + + IAV P LD+ GN P++I PG+
Sbjct: 361 PALNNNF-----EAE-----GQTITMPKETLTNNSLTIAVSPDLLDQFGN--PMNIEPGD 408
Query: 220 TVMYSK 225
+Y +
Sbjct: 409 GGVYDQ 414
>pdb|1P82|A Chain A, Nmr Structure Of 1-25 Fragment Of Mycobacterium
Tuberculosis Cpn10
pdb|1P83|A Chain A, Nmr Structure Of 1-25 Fragment Of Mycobacterium
Tuberculosis Cpn10
Length = 25
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 158 DLKPLNDRVFIKVAEAEETTAG 179
++KPL D++ ++ EAE TTA
Sbjct: 4 NIKPLEDKILVQANEAETTTAS 25
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.132 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,203,225
Number of Sequences: 62578
Number of extensions: 300127
Number of successful extensions: 502
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 480
Number of HSP's gapped (non-prelim): 23
length of query: 252
length of database: 14,973,337
effective HSP length: 97
effective length of query: 155
effective length of database: 8,903,271
effective search space: 1380007005
effective search space used: 1380007005
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.9 bits)