Query 025503
Match_columns 252
No_of_seqs 122 out of 436
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 06:31:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025503.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025503hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5040 BMH1 14-3-3 family pro 100.0 2.3E-94 4.9E-99 609.1 15.8 238 1-238 1-238 (268)
2 smart00101 14_3_3 14-3-3 homol 100.0 1.1E-91 2.4E-96 621.3 24.8 239 5-243 1-241 (244)
3 PF00244 14-3-3: 14-3-3 protei 100.0 3.1E-87 6.7E-92 592.2 22.6 235 5-239 1-235 (236)
4 KOG0841 Multifunctional chaper 100.0 3.1E-82 6.7E-87 549.5 20.1 237 4-240 1-238 (247)
5 PF13424 TPR_12: Tetratricopep 96.4 0.0071 1.5E-07 43.3 4.8 55 146-202 21-75 (78)
6 KOG1840 Kinesin light chain [C 95.0 1.7 3.8E-05 43.0 16.7 187 7-208 201-402 (508)
7 TIGR00990 3a0801s09 mitochondr 92.8 2.2 4.9E-05 42.4 13.3 54 146-201 483-536 (615)
8 PF12862 Apc5: Anaphase-promot 90.9 1.3 2.8E-05 33.4 7.1 60 147-207 15-75 (94)
9 KOG1840 Kinesin light chain [C 88.4 28 0.00061 34.6 18.9 183 8-213 286-490 (508)
10 PF13414 TPR_11: TPR repeat; P 85.4 4.1 8.9E-05 27.8 6.2 47 146-201 19-66 (69)
11 PF07719 TPR_2: Tetratricopept 84.6 2.3 5E-05 24.8 4.1 30 8-37 4-33 (34)
12 PF13174 TPR_6: Tetratricopept 82.2 2.8 6.1E-05 24.2 3.7 30 8-37 3-32 (33)
13 PF13374 TPR_10: Tetratricopep 81.0 1.6 3.5E-05 26.6 2.4 24 146-169 18-41 (42)
14 PF04781 DUF627: Protein of un 80.5 3.3 7.1E-05 32.8 4.5 41 120-160 33-74 (111)
15 TIGR02917 PEP_TPR_lipo putativ 80.3 65 0.0014 32.0 15.3 56 8-66 706-761 (899)
16 TIGR00990 3a0801s09 mitochondr 78.2 76 0.0017 31.6 16.7 74 146-228 524-597 (615)
17 PF13428 TPR_14: Tetratricopep 78.1 4.8 0.0001 25.6 4.1 30 8-37 4-33 (44)
18 PF13181 TPR_8: Tetratricopept 78.1 4.1 8.8E-05 23.9 3.5 29 8-36 4-32 (34)
19 TIGR02917 PEP_TPR_lipo putativ 77.2 81 0.0017 31.3 16.1 61 6-68 23-83 (899)
20 PF00515 TPR_1: Tetratricopept 75.5 7.1 0.00015 22.9 4.1 30 8-37 4-33 (34)
21 PF13431 TPR_17: Tetratricopep 74.6 3.8 8.3E-05 25.0 2.7 34 152-194 1-34 (34)
22 PRK10049 pgaA outer membrane p 70.3 1.3E+02 0.0028 31.1 14.2 54 9-65 87-140 (765)
23 PRK10049 pgaA outer membrane p 69.4 1.3E+02 0.0028 31.1 14.0 31 8-38 52-82 (765)
24 TIGR02521 type_IV_pilW type IV 69.1 59 0.0013 26.1 16.7 165 7-202 33-198 (234)
25 KOG4162 Predicted calmodulin-b 68.4 1.5E+02 0.0033 31.0 13.8 97 91-202 410-507 (799)
26 PF13424 TPR_12: Tetratricopep 68.4 9.7 0.00021 26.6 4.1 38 168-207 1-38 (78)
27 PF12569 NARP1: NMDA receptor- 65.3 1.5E+02 0.0033 29.5 16.6 61 140-201 156-222 (517)
28 PF13432 TPR_16: Tetratricopep 65.1 35 0.00077 22.8 6.3 53 10-64 2-54 (65)
29 CHL00033 ycf3 photosystem I as 63.1 61 0.0013 26.2 8.5 70 146-224 88-163 (168)
30 PF13414 TPR_11: TPR repeat; P 62.6 44 0.00096 22.4 7.1 45 7-52 5-49 (69)
31 smart00028 TPR Tetratricopepti 62.3 19 0.00041 18.8 3.8 29 8-36 4-32 (34)
32 PF13371 TPR_9: Tetratricopept 62.0 34 0.00074 23.3 5.9 46 147-201 12-57 (73)
33 KOG4759 Ribosome recycling fac 60.5 42 0.00091 30.5 7.4 71 36-109 183-253 (263)
34 PRK14720 transcript cleavage f 60.3 19 0.00041 38.3 5.9 87 103-204 88-180 (906)
35 PF14559 TPR_19: Tetratricopep 58.8 45 0.00098 22.3 6.0 45 147-200 8-52 (68)
36 PF13176 TPR_7: Tetratricopept 58.8 19 0.00042 21.8 3.6 26 8-33 2-27 (36)
37 PF01765 RRF: Ribosome recycli 58.3 42 0.00091 27.9 6.7 72 36-108 85-156 (165)
38 PF13432 TPR_16: Tetratricopep 58.0 21 0.00045 24.0 4.1 33 5-37 31-63 (65)
39 PRK15363 pathogenicity island 57.7 41 0.00089 28.2 6.5 72 143-227 82-155 (157)
40 COG0233 Frr Ribosome recycling 57.2 45 0.00097 28.8 6.7 74 35-109 104-177 (187)
41 PF05010 TACC: Transforming ac 53.0 40 0.00087 29.5 5.9 84 10-106 123-206 (207)
42 CHL00033 ycf3 photosystem I as 52.4 54 0.0012 26.5 6.4 68 118-201 33-100 (168)
43 COG3947 Response regulator con 50.5 20 0.00043 33.5 3.7 48 180-233 287-334 (361)
44 PRK09782 bacteriophage N4 rece 49.9 3.7E+02 0.0079 29.1 15.9 25 9-33 513-537 (987)
45 PRK11447 cellulose synthase su 49.8 3.7E+02 0.0081 29.2 15.1 56 10-67 356-411 (1157)
46 PF14559 TPR_19: Tetratricopep 49.8 66 0.0014 21.4 5.6 53 17-71 3-55 (68)
47 TIGR00496 frr ribosome recycli 48.1 66 0.0014 27.3 6.4 73 36-109 94-166 (176)
48 PRK11447 cellulose synthase su 47.1 4.1E+02 0.0089 28.9 15.5 62 8-70 115-176 (1157)
49 cd02682 MIT_AAA_Arch MIT: doma 46.9 1.1E+02 0.0023 22.5 6.5 27 7-33 8-34 (75)
50 cd00520 RRF Ribosome recycling 46.9 61 0.0013 27.5 6.0 73 36-109 99-171 (179)
51 PRK00083 frr ribosome recyclin 46.8 71 0.0015 27.4 6.4 73 36-109 103-175 (185)
52 PF10083 DUF2321: Uncharacteri 46.5 1.3E+02 0.0029 25.3 7.7 35 22-56 82-116 (158)
53 TIGR02795 tol_pal_ybgF tol-pal 46.1 90 0.002 22.7 6.3 50 147-202 56-105 (119)
54 PRK11788 tetratricopeptide rep 45.6 2.3E+02 0.0051 25.6 16.4 16 186-201 295-310 (389)
55 PRK15179 Vi polysaccharide bio 44.7 2.3E+02 0.0049 29.4 10.7 129 6-161 87-219 (694)
56 PF13429 TPR_15: Tetratricopep 44.4 56 0.0012 28.7 5.7 162 10-203 49-210 (280)
57 PF12895 Apc3: Anaphase-promot 44.2 37 0.00081 24.1 3.8 43 153-198 41-83 (84)
58 PF12688 TPR_5: Tetratrico pep 44.1 1.1E+02 0.0024 24.1 6.8 50 147-202 18-67 (120)
59 PRK02603 photosystem I assembl 44.0 93 0.002 25.3 6.6 50 147-202 52-101 (172)
60 cd02656 MIT MIT: domain contai 43.7 1.1E+02 0.0025 21.5 6.3 26 8-33 9-34 (75)
61 PLN03088 SGT1, suppressor of 43.2 2.8E+02 0.0061 25.8 10.4 58 7-66 38-95 (356)
62 PRK12794 flaF flagellar biosyn 42.6 32 0.00069 27.6 3.4 53 182-234 8-60 (122)
63 TIGR03302 OM_YfiO outer membra 41.5 2.1E+02 0.0046 24.0 16.3 63 6-69 34-98 (235)
64 PF13371 TPR_9: Tetratricopept 40.8 51 0.0011 22.4 3.9 29 8-36 32-60 (73)
65 COG4499 Predicted membrane pro 39.1 63 0.0014 31.1 5.2 47 172-218 231-282 (434)
66 PLN03088 SGT1, suppressor of 36.6 1.1E+02 0.0023 28.6 6.5 46 151-200 50-97 (356)
67 PF06552 TOM20_plant: Plant sp 35.2 1.6E+02 0.0035 25.4 6.7 86 127-221 32-122 (186)
68 PRK12793 flaF flagellar biosyn 35.0 42 0.00092 26.6 3.0 52 182-234 6-58 (115)
69 TIGR02795 tol_pal_ybgF tol-pal 34.5 1.8E+02 0.0038 21.0 7.5 44 7-50 4-49 (119)
70 KOG2002 TPR-containing nuclear 34.4 6.1E+02 0.013 27.5 11.8 133 8-206 167-303 (1018)
71 PRK02603 photosystem I assembl 33.5 2.6E+02 0.0056 22.6 8.2 68 147-223 89-162 (172)
72 PRK15331 chaperone protein Sic 33.0 2.4E+02 0.0052 23.8 7.4 72 144-230 85-156 (165)
73 cd05804 StaR_like StaR_like; a 32.7 3.6E+02 0.0078 24.0 15.4 58 8-65 9-67 (355)
74 COG3063 PilF Tfp pilus assembl 32.6 60 0.0013 29.2 3.8 46 146-200 85-130 (250)
75 PRK15174 Vi polysaccharide exp 31.7 5.6E+02 0.012 26.0 15.5 31 8-38 113-143 (656)
76 PF02259 FAT: FAT domain; Int 30.5 3.9E+02 0.0084 23.7 12.7 29 7-35 148-176 (352)
77 PF12895 Apc3: Anaphase-promot 30.3 88 0.0019 22.1 3.9 21 10-30 63-83 (84)
78 PF05008 V-SNARE: Vesicle tran 29.6 2.1E+02 0.0045 20.3 6.7 68 24-91 4-71 (79)
79 PHA01810 hypothetical protein 29.6 2.2E+02 0.0048 21.1 5.8 33 17-49 11-44 (100)
80 COG2956 Predicted N-acetylgluc 28.0 94 0.002 29.5 4.4 47 9-55 218-264 (389)
81 PF08424 NRDE-2: NRDE-2, neces 27.6 3.9E+02 0.0085 24.5 8.6 88 146-240 118-215 (321)
82 PRK11189 lipoprotein NlpI; Pro 27.5 1.3E+02 0.0028 27.0 5.3 31 7-37 238-268 (296)
83 smart00745 MIT Microtubule Int 27.4 2.2E+02 0.0048 20.0 6.3 27 7-33 10-36 (77)
84 KOG1126 DNA-binding cell divis 27.2 75 0.0016 32.4 3.9 68 124-200 483-550 (638)
85 TIGR02552 LcrH_SycD type III s 27.0 2.8E+02 0.006 20.9 8.8 57 6-64 18-74 (135)
86 KOG0687 26S proteasome regulat 27.0 2.2E+02 0.0048 27.1 6.6 78 127-207 54-138 (393)
87 PRK14574 hmsH outer membrane p 27.0 7.8E+02 0.017 26.1 16.9 45 186-230 340-398 (822)
88 cd05804 StaR_like StaR_like; a 26.7 4.6E+02 0.0099 23.3 12.1 34 4-37 42-75 (355)
89 COG3629 DnrI DNA-binding trans 26.5 5E+02 0.011 23.8 8.8 62 8-69 156-218 (280)
90 PF14689 SPOB_a: Sensor_kinase 26.1 65 0.0014 22.4 2.4 22 12-33 30-51 (62)
91 PF08631 SPO22: Meiosis protei 25.7 4.8E+02 0.01 23.2 9.2 89 146-235 9-100 (278)
92 cd02678 MIT_VPS4 MIT: domain c 25.6 2.5E+02 0.0054 19.9 6.0 27 7-33 8-34 (75)
93 PF08899 DUF1844: Domain of un 25.2 1.3E+02 0.0028 22.1 3.9 28 22-51 41-68 (74)
94 COG2250 Uncharacterized conser 24.7 3.7E+02 0.0079 21.5 9.4 102 7-109 15-129 (132)
95 PRK15174 Vi polysaccharide exp 24.6 7.5E+02 0.016 25.1 16.1 29 10-38 81-109 (656)
96 cd02683 MIT_1 MIT: domain cont 24.1 1.9E+02 0.0041 21.0 4.7 27 7-33 8-34 (77)
97 KOG0553 TPR repeat-containing 24.0 2.1E+02 0.0045 26.7 5.8 44 147-199 98-141 (304)
98 PF03755 YicC_N: YicC-like fam 24.0 1.5E+02 0.0032 24.5 4.6 62 148-209 82-147 (159)
99 PF10516 SHNi-TPR: SHNi-TPR; 23.9 55 0.0012 20.7 1.5 37 128-167 2-38 (38)
100 TIGR00756 PPR pentatricopeptid 23.3 1.5E+02 0.0031 16.4 4.0 27 11-37 6-32 (35)
101 TIGR03504 FimV_Cterm FimV C-te 22.7 1.5E+02 0.0033 19.3 3.5 39 9-47 3-42 (44)
102 KOG0570 Transcriptional coacti 22.6 4.9E+02 0.011 22.9 7.5 26 41-66 109-139 (223)
103 KOG0547 Translocase of outer m 22.4 1E+02 0.0022 30.9 3.6 46 146-200 131-176 (606)
104 PF08717 nsp8: nsp8 replicase; 21.9 1.1E+02 0.0023 26.6 3.3 40 145-204 14-53 (199)
105 KOG3089 Predicted DEAD-box-con 21.6 3.2E+02 0.0069 24.6 6.3 80 19-107 79-161 (271)
106 PF11568 Med29: Mediator compl 21.5 2.1E+02 0.0046 23.8 4.9 49 50-102 10-69 (148)
107 PF14490 HHH_4: Helix-hairpin- 21.3 1.4E+02 0.003 22.3 3.5 48 123-182 38-86 (94)
108 PF00901 Orbi_VP5: Orbivirus o 21.2 7.3E+02 0.016 24.8 9.2 183 21-227 121-331 (508)
109 PF09969 DUF2203: Uncharacteri 21.1 4.3E+02 0.0092 21.0 8.2 67 38-104 3-69 (120)
110 PF07309 FlaF: Flagellar prote 20.8 1E+02 0.0022 24.2 2.9 48 186-234 10-57 (113)
111 KOG0547 Translocase of outer m 20.7 8.9E+02 0.019 24.5 14.5 162 8-200 363-530 (606)
112 PRK15326 type III secretion sy 20.4 1.3E+02 0.0028 22.5 3.0 35 146-182 20-58 (80)
No 1
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-94 Score=609.08 Aligned_cols=238 Identities=76% Similarity=1.151 Sum_probs=233.5
Q ss_pred CcccHhhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHhHhhhhhhhCchhHH
Q 025503 1 MEKEREHHVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNV 80 (252)
Q Consensus 1 ~~~~re~~~~~Aklaeq~ery~dm~~~mk~~i~~~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~ 80 (252)
|+-.|++.+|+|||++||+||++|++-||.++-.+.+|+.+|||||||||||+||.||+|||++++++||++++|+..++
T Consensus 1 Ms~~rE~svylAkLaeqAERYe~MvenMk~vas~~~eLsVeeRNLlSVAYKNvigaRRaSWRivsSieQKeEsk~~~~qv 80 (268)
T COG5040 1 MSTSREDSVYLAKLAEQAERYEEMVENMKLVASSGQELSVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESKGNTHQV 80 (268)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcCCChhHH
Confidence 66689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCchHhHHhhhhcccccccccccCccchHHHHHHHHHHHHHHHHHH
Q 025503 81 KRIKEYRQRVEDELAKICNDILSVIDEHLIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKAYEAATAAA 160 (252)
Q Consensus 81 ~~i~~yk~ki~~EL~~~c~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRY~aE~~~~~~~~~~~~~A~~aY~~A~~~a 160 (252)
.+|++|+++|++||..||++|+.+|+.+|||.+++.|++|||+|||||||||+|||..|+.+.++.+.+.++|+.|.++|
T Consensus 81 ~lI~eyrkkiE~EL~~icddiL~vl~~hlipaa~~~EskvFyyKMKGDYyRYlAEf~~G~~~~e~a~~slE~YK~AseiA 160 (268)
T COG5040 81 ELIKEYRKKIETELTKICDDILSVLEKHLIPAATTGESKVFYYKMKGDYYRYLAEFSVGEAREEAADSSLEAYKAASEIA 160 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEeecchHHHHHHHhccchHhHHHHHhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHhhHhhhhcCCCC
Q 025503 161 ASELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPE 238 (252)
Q Consensus 161 ~~~L~pt~PirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~IlqlLrdNl~~W~~e~~~ 238 (252)
...||||||||||||||||||||||+|++++||.+||+|||+||++||+|+|++|+|||+||||||||||+||++.++
T Consensus 161 ~teLpPT~PirLGLALNfSVFyYEIlnspdkAC~lAKqaFDeAI~ELDtLSEEsYkDSTLIMQLLRDNLTLWTSd~e~ 238 (268)
T COG5040 161 TTELPPTHPIRLGLALNFSVFYYEILNSPDKACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDAEY 238 (268)
T ss_pred hccCCCCCchhhhheecceeeeeecccCcHHHHHHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHHhcceeeeccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987553
No 2
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=100.00 E-value=1.1e-91 Score=621.28 Aligned_cols=239 Identities=74% Similarity=1.134 Sum_probs=230.6
Q ss_pred HhhHHHHHHHHHHhCCHHHHHHHHHHHHhc-C-CCCCHHHHHHHHHHHhhhhhhhhhHHHHHHhHhhhhhhhCchhHHHH
Q 025503 5 REHHVYLARLAEQAERYDEMVEAMKKVAKL-D-VELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKR 82 (252)
Q Consensus 5 re~~~~~Aklaeq~ery~dm~~~mk~~i~~-~-~~L~~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~ 82 (252)
|++++|+|||++|||||+||+.+||++++. + .+||.||||||||||||+||++|+|||+|+++++++..+|++.+++.
T Consensus 1 re~~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~~~~ 80 (244)
T smart00101 1 REENVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVAS 80 (244)
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHHHHH
Confidence 689999999999999999999999999997 5 59999999999999999999999999999999999887888788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCchHhHHhhhhcccccccccccCccchHHHHHHHHHHHHHHHHHHhc
Q 025503 83 IKEYRQRVEDELAKICNDILSVIDEHLIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKAYEAATAAAAS 162 (252)
Q Consensus 83 i~~yk~ki~~EL~~~c~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRY~aE~~~~~~~~~~~~~A~~aY~~A~~~a~~ 162 (252)
+++||++|++||..+|++||++||++|||.+++++++|||+|||||||||+|||..|+++++++++|+++|++|+++|++
T Consensus 81 ~~~yr~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~ 160 (244)
T smart00101 81 IKEYRGKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALA 160 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHhhHhhhhcCCCCCccc
Q 025503 163 ELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPEEGGE 242 (252)
Q Consensus 163 ~L~pt~PirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~IlqlLrdNl~~W~~e~~~~~~~ 242 (252)
+||||||+||||+||||||||||+|++++||++|++|||+|++++|+++|++|+|+|+|||||||||++|+++++++++.
T Consensus 161 ~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld~l~ee~y~dstlImqLLrDNL~lW~~~~~~~~~~ 240 (244)
T smart00101 161 ELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDLQDDGAD 240 (244)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccChhhhHHHHHHHHHHHHHHHhccCCCCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997766554
Q ss_pred h
Q 025503 243 C 243 (252)
Q Consensus 243 ~ 243 (252)
.
T Consensus 241 ~ 241 (244)
T smart00101 241 E 241 (244)
T ss_pred h
Confidence 3
No 3
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=100.00 E-value=3.1e-87 Score=592.24 Aligned_cols=235 Identities=72% Similarity=1.118 Sum_probs=223.7
Q ss_pred HhhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHhHhhhhhhhCchhHHHHHH
Q 025503 5 REHHVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIK 84 (252)
Q Consensus 5 re~~~~~Aklaeq~ery~dm~~~mk~~i~~~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~ 84 (252)
|++++|+|||++|||||+||+++||++++.+++||.|||||||+||||+|+++|+|||+|++++++++++|++.+++.++
T Consensus 1 Re~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~ 80 (236)
T PF00244_consen 1 REELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIK 80 (236)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCchHhHHhhhhcccccccccccCccchHHHHHHHHHHHHHHHHHHhccC
Q 025503 85 EYRQRVEDELAKICNDILSVIDEHLIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKAYEAATAAAASEL 164 (252)
Q Consensus 85 ~yk~ki~~EL~~~c~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRY~aE~~~~~~~~~~~~~A~~aY~~A~~~a~~~L 164 (252)
+||++|++||..+|++||++||++|+|.+++++++|||+|||||||||+|||..|+++++++++|.++|++|+++|+++|
T Consensus 81 ~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L 160 (236)
T PF00244_consen 81 DYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKEL 160 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999899
Q ss_pred CCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHhhHhhhhcCCCCC
Q 025503 165 PPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPEE 239 (252)
Q Consensus 165 ~pt~PirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~IlqlLrdNl~~W~~e~~~~ 239 (252)
|||||+||||+||||||||||+|++++||+||++|||+|++++|+++|++|+|+++|||||||||++|+++.+++
T Consensus 161 ~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l~e~~~~d~~~ilqlLrdNl~lW~~e~~~~ 235 (236)
T PF00244_consen 161 PPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTLSEESYKDSTLILQLLRDNLTLWTSEEEEE 235 (236)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGSHTTTHHHHHHHHHHHHHHHHHHTTT----
T ss_pred CCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHhcccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997765
No 4
>KOG0841 consensus Multifunctional chaperone (14-3-3 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-82 Score=549.51 Aligned_cols=237 Identities=81% Similarity=1.187 Sum_probs=232.0
Q ss_pred cHhhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHhHhhhhhhhCchhHHHHH
Q 025503 4 EREHHVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRI 83 (252)
Q Consensus 4 ~re~~~~~Aklaeq~ery~dm~~~mk~~i~~~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i 83 (252)
+|++++++|+|++|+|||+||+.+||.+++.+.+||.||||||||+|||+||++|++||+|++++||++++|++.++..+
T Consensus 1 ~~~~~v~~akl~eqaery~~m~~~Mk~v~~~~~eLtveernllsvayknVigarrasWriisSiEqKees~~~e~~v~~i 80 (247)
T KOG0841|consen 1 EREELVYKAKLAEQAERYDEMVEAMKKVAELDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESKGNEEKVKMI 80 (247)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHhhcccchhhhHHHHhhhhhhhccccchhHHHHHHhhhhhhcccCCCcchHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCC-CchHhHHhhhhcccccccccccCccchHHHHHHHHHHHHHHHHHHhc
Q 025503 84 KEYRQRVEDELAKICNDILSVIDEHLIPSSTS-GESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKAYEAATAAAAS 162 (252)
Q Consensus 84 ~~yk~ki~~EL~~~c~eii~lid~~Lip~~~~-~eskvfy~KmkgDyyRY~aE~~~~~~~~~~~~~A~~aY~~A~~~a~~ 162 (252)
+.|+++|+.||..+|++++.++|.+|+|.++. .|++|||+|||||||||+|||.+|++|++++++++++|+.|.++|+.
T Consensus 81 ~~yr~~vE~El~~ic~~iL~lld~~Li~sa~~~~es~vf~~kmKgdy~rylae~~sg~erke~~~~sl~aYk~a~~ia~~ 160 (247)
T KOG0841|consen 81 KEYRQKVETELAKICDDILSLLDKHLIPSATLPGESKVFYLKMKGDYYRYLAEFASGDERKEAADQSLEAYKEASEIAKA 160 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeeeccchhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999988 78999999999999999999999999999999999999999999998
Q ss_pred cCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHhhHhhhhcCCCCCc
Q 025503 163 ELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPEEG 240 (252)
Q Consensus 163 ~L~pt~PirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~IlqlLrdNl~~W~~e~~~~~ 240 (252)
.|+|||||||||+||||||||||++.|++||.|||+|||+||.++|++++++|+|||+||||||||+|+|+++.++++
T Consensus 161 ~l~PthPirLgLaLnfSvf~yeilnsPe~ac~lak~a~d~ai~eldtl~e~sykdStlimqllrdnltlWts~~~~~~ 238 (247)
T KOG0841|consen 161 ELQPTHPIRLGLALNFSVFYYEILNSPERACSLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDE 238 (247)
T ss_pred cCCCCCchHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhhccccHHHHhhhHHHHHHHHHhhhhhccCccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988764
No 5
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.36 E-value=0.0071 Score=43.32 Aligned_cols=55 Identities=29% Similarity=0.353 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHH
Q 025503 146 ADHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDE 202 (252)
Q Consensus 146 ~~~A~~aY~~A~~~a~~~L~pt~PirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 202 (252)
-+.|...|++|+++ .+.+++.||...-...|.+..++. +|+.++|++..++|++-
T Consensus 21 ~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 21 YDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Confidence 35799999999999 556898888888888888888877 79999999999998864
No 6
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=94.97 E-value=1.7 Score=42.97 Aligned_cols=187 Identities=15% Similarity=0.189 Sum_probs=123.5
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhc----C--CCCCH-HHHHHHHHHHhhhhhhhhhHHHHHH-hHhhhhhhhCc--
Q 025503 7 HHVYLARLAEQAERYDEMVEAMKKVAKL----D--VELTV-EERNLVSVGYKNVIGARRASWRILS-SIEQKEEAKGN-- 76 (252)
Q Consensus 7 ~~~~~Aklaeq~ery~dm~~~mk~~i~~----~--~~L~~-eERnLls~ayKn~i~~~R~s~R~l~-~~eq~~~~~~~-- 76 (252)
.+.++|.+..+.|+|+.++...|+.++. . ..+-. .-.+-|++.|-+. +..+.|..++. ++...+...|.
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~-~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL-GKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3456888888889999999999998865 1 12222 2344466666543 44566666664 34444444443
Q ss_pred hhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhcccCCCCCCchHhHHhhhhcccccccccccCccchHHHHHHHHH
Q 025503 77 EQNVKRIKE-----YRQRVEDELAKICNDILSVIDEHLIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLK 151 (252)
Q Consensus 77 ~~~~~~i~~-----yk~ki~~EL~~~c~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRY~aE~~~~~~~~~~~~~A~~ 151 (252)
+.....+.+ ++.-=-.|-...|+.+++|..+ ++.+..++..--+ .++..-..-..-.+.|..
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~--~~~~~~~~v~~~l-----------~~~~~~~~~~~~~Eea~~ 346 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK--LLGASHPEVAAQL-----------SELAAILQSMNEYEEAKK 346 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH--hhccChHHHHHHH-----------HHHHHHHHHhcchhHHHH
Confidence 233333332 3333346788899999999988 3444334332222 122111111122568999
Q ss_pred HHHHHHHHHhccCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHHhhc
Q 025503 152 AYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELD 208 (252)
Q Consensus 152 aY~~A~~~a~~~L~pt~PirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld 208 (252)
.|+.|+.+....+++.||.-=|+--|+++.|+- +|..++|.++.++|+..+-+..+
T Consensus 347 l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~-~gk~~ea~~~~k~ai~~~~~~~~ 402 (508)
T KOG1840|consen 347 LLQKALKIYLDAPGEDNVNLAKIYANLAELYLK-MGKYKEAEELYKKAIQILRELLG 402 (508)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHhccc
Confidence 999999999888999999999999999999887 79999999999999888754443
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=92.85 E-value=2.2 Score=42.45 Aligned_cols=54 Identities=15% Similarity=0.147 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025503 146 ADHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFD 201 (252)
Q Consensus 146 ~~~A~~aY~~A~~~a~~~L~pt~PirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (252)
.+.|...|++|+++... ..+.++..++ .++.+..+|+-.|+.++|+.+.++|+.
T Consensus 483 ~~~A~~~~~~Al~l~p~-~~~~~~~~~~-l~~~a~~~~~~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 483 FDEAIEKFDTAIELEKE-TKPMYMNVLP-LINKALALFQWKQDFIEAENLCEKALI 536 (615)
T ss_pred HHHHHHHHHHHHhcCCc-cccccccHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 35688888888876532 3333333333 345555566666888888877776653
No 8
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.91 E-value=1.3 Score=33.35 Aligned_cols=60 Identities=18% Similarity=0.086 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchHHHh-hhHHHHHHHhhCChHHHHHHHHHHHHHHHHhh
Q 025503 147 DHSLKAYEAATAAAASELPPTHPIRLGLA-LNFSVFYYEILNSPERACHLAKQAFDEAIAEL 207 (252)
Q Consensus 147 ~~A~~aY~~A~~~a~~~L~pt~PirLgL~-LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~l 207 (252)
..|.+...+.++.+.....+.++..+..+ ||.+.+++. +|++++|+...++|++-|-+.-
T Consensus 15 ~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~Are~~ 75 (94)
T PF12862_consen 15 SEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLARENG 75 (94)
T ss_pred HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHC
Confidence 46788888888888776666654455544 788887777 6999999999999988887553
No 9
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=88.39 E-value=28 Score=34.56 Aligned_cols=183 Identities=14% Similarity=0.132 Sum_probs=113.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcC----CCCCHHHHHHHHHH---------HhhhhhhhhhHHHHHHhHhhhhhhh
Q 025503 8 HVYLARLAEQAERYDEMVEAMKKVAKLD----VELTVEERNLVSVG---------YKNVIGARRASWRILSSIEQKEEAK 74 (252)
Q Consensus 8 ~~~~Aklaeq~ery~dm~~~mk~~i~~~----~~L~~eERnLls~a---------yKn~i~~~R~s~R~l~~~eq~~~~~ 74 (252)
+.-+|.+.-..|+|+++-.+++.+++.- +...++=-..|+.. |...+.-.+.+.+++. ... +.
T Consensus 286 l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~---~~~-g~ 361 (508)
T KOG1840|consen 286 LNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL---DAP-GE 361 (508)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH---hhc-cc
Confidence 4457777888899999999998887551 22333322222221 3334444444444443 111 11
Q ss_pred CchhHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhhcccCCCCCCchHhHHhhhhcccccccccccCccchHHH
Q 025503 75 GNEQNVKRIKEYRQRV---------EDELAKICNDILSVIDEHLIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEA 145 (252)
Q Consensus 75 ~~~~~~~~i~~yk~ki---------~~EL~~~c~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRY~aE~~~~~~~~~~ 145 (252)
.+ ..+..++..+ -+|=..+-+.+|.+.-... ...+..--.+++.|-.+|+|-. -
T Consensus 362 ~~----~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~--~~~~~~~~~~l~~la~~~~~~k-----------~ 424 (508)
T KOG1840|consen 362 DN----VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL--GKKDYGVGKPLNQLAEAYEELK-----------K 424 (508)
T ss_pred cc----hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc--cCcChhhhHHHHHHHHHHHHhc-----------c
Confidence 11 0111111111 2344555666666665443 2223345577778877775321 1
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHHhhccCCcc
Q 025503 146 ADHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEE 213 (252)
Q Consensus 146 ~~~A~~aY~~A~~~a~~~L~pt~PirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee 213 (252)
...|.+.|.+|..+. ....|.||--++..+|.++- |+-+|+.++|++++..+..-=...+++.+.+
T Consensus 425 ~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~-Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~ 490 (508)
T KOG1840|consen 425 YEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAAL-YRAQGNYEAAEELEEKVLNAREQRLGTASPT 490 (508)
T ss_pred cchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 346889999999999 77999999999999999985 5778999999999999887666666666554
No 10
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=85.37 E-value=4.1 Score=27.82 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchHHHhhhHHHHHHHhhC-ChHHHHHHHHHHHH
Q 025503 146 ADHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILN-SPERACHLAKQAFD 201 (252)
Q Consensus 146 ~~~A~~aY~~A~~~a~~~L~pt~PirLgL~LN~SVF~yEi~~-~~~~A~~iak~afd 201 (252)
-+.|...|++|+++ +|-.-.+..|.++-++. +| +.++|+...++|+.
T Consensus 19 ~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 19 YEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHH
Confidence 45799999999976 34445578888888777 57 79999999888875
No 11
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=84.65 E-value=2.3 Score=24.84 Aligned_cols=30 Identities=30% Similarity=0.430 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 025503 8 HVYLARLAEQAERYDEMVEAMKKVAKLDVE 37 (252)
Q Consensus 8 ~~~~Aklaeq~ery~dm~~~mk~~i~~~~~ 37 (252)
+..++.+..+.|+|+++++++++.+..+|.
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 457889999999999999999999987663
No 12
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.20 E-value=2.8 Score=24.22 Aligned_cols=30 Identities=27% Similarity=0.278 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 025503 8 HVYLARLAEQAERYDEMVEAMKKVAKLDVE 37 (252)
Q Consensus 8 ~~~~Aklaeq~ery~dm~~~mk~~i~~~~~ 37 (252)
+..+|.+..+.|+++++++.+++++...|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 567889999999999999999999987664
No 13
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.98 E-value=1.6 Score=26.61 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCc
Q 025503 146 ADHSLKAYEAATAAAASELPPTHP 169 (252)
Q Consensus 146 ~~~A~~aY~~A~~~a~~~L~pt~P 169 (252)
.+.|...|++|+.+.+.-++|.||
T Consensus 18 ~~~A~~~~~~al~~~~~~~G~~Hp 41 (42)
T PF13374_consen 18 YEEALELLEEALEIRERLLGPDHP 41 (42)
T ss_dssp HHHHHHHHHHHHHHH---------
T ss_pred cchhhHHHHHHHHHHHHHhccccc
Confidence 357999999999999888899998
No 14
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=80.51 E-value=3.3 Score=32.81 Aligned_cols=41 Identities=15% Similarity=0.183 Sum_probs=33.7
Q ss_pred hHHhhhhcccccccccccCccc-hHHHHHHHHHHHHHHHHHH
Q 025503 120 VFYYKMKGDYYRYLAEFKGADD-RKEAADHSLKAYEAATAAA 160 (252)
Q Consensus 120 vfy~KmkgDyyRY~aE~~~~~~-~~~~~~~A~~aY~~A~~~a 160 (252)
.|-+...|+.+..+|....+.+ +..+.-.|.+||.+|..++
T Consensus 33 ~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Ls 74 (111)
T PF04781_consen 33 WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELS 74 (111)
T ss_pred HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccC
Confidence 4888999999999999876544 6678889999999997554
No 15
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=80.26 E-value=65 Score=31.98 Aligned_cols=56 Identities=13% Similarity=0.099 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHh
Q 025503 8 HVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSS 66 (252)
Q Consensus 8 ~~~~Aklaeq~ery~dm~~~mk~~i~~~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~ 66 (252)
...++.+..+.|+|++++..+++++..+|.- .-..-+..+|.. .+....+...+..
T Consensus 706 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~-~g~~~~A~~~~~~ 761 (899)
T TIGR02917 706 FELEGDLYLRQKDYPAAIQAYRKALKRAPSS--QNAIKLHRALLA-SGNTAEAVKTLEA 761 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--hHHHHHHHHHHH-CCCHHHHHHHHHH
Confidence 4567788888899999999999888765543 222333344432 3444455555544
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=78.15 E-value=76 Score=31.57 Aligned_cols=74 Identities=16% Similarity=0.152 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHHhhccCCccchHHHHHHHHHH
Q 025503 146 ADHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLL 225 (252)
Q Consensus 146 ~~~A~~aY~~A~~~a~~~L~pt~PirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~IlqlL 225 (252)
.+.|.+.|++|+. +.|.++. ...+.+-.++. .|+.++|+....+|..-+-+.-+-..--+|.+++.+-..+
T Consensus 524 ~~eA~~~~~kAl~-----l~p~~~~---a~~~la~~~~~-~g~~~eAi~~~e~A~~l~~~~~e~~~a~~~~~a~~~~~~~ 594 (615)
T TIGR00990 524 FIEAENLCEKALI-----IDPECDI---AVATMAQLLLQ-QGDVDEALKLFERAAELARTEGELVQAISYAEATRTQIQV 594 (615)
T ss_pred HHHHHHHHHHHHh-----cCCCcHH---HHHHHHHHHHH-ccCHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 3457777777764 3455543 22334444444 7999999998888876654332222223466666664444
Q ss_pred Hhh
Q 025503 226 RDN 228 (252)
Q Consensus 226 rdN 228 (252)
+.+
T Consensus 595 ~~~ 597 (615)
T TIGR00990 595 QED 597 (615)
T ss_pred HHH
Confidence 444
No 17
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=78.15 E-value=4.8 Score=25.62 Aligned_cols=30 Identities=23% Similarity=0.290 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 025503 8 HVYLARLAEQAERYDEMVEAMKKVAKLDVE 37 (252)
Q Consensus 8 ~~~~Aklaeq~ery~dm~~~mk~~i~~~~~ 37 (252)
...+|+...+.|+++++++.++++++.+|+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 567899999999999999999999988765
No 18
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=78.08 E-value=4.1 Score=23.90 Aligned_cols=29 Identities=28% Similarity=0.394 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 025503 8 HVYLARLAEQAERYDEMVEAMKKVAKLDV 36 (252)
Q Consensus 8 ~~~~Aklaeq~ery~dm~~~mk~~i~~~~ 36 (252)
+..++++..+.|+++.++.++++.++.+|
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 56789999999999999999999998755
No 19
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=77.19 E-value=81 Score=31.33 Aligned_cols=61 Identities=21% Similarity=0.211 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHhHh
Q 025503 6 EHHVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSSIE 68 (252)
Q Consensus 6 e~~~~~Aklaeq~ery~dm~~~mk~~i~~~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~~e 68 (252)
..++..|+...+-|+|++++..+++.+...|+ +.+=+..+..+|-. .+....|...+....
T Consensus 23 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~ 83 (899)
T TIGR02917 23 ESLIEAAKSYLQKNKYKAAIIQLKNALQKDPN-DAEARFLLGKIYLA-LGDYAAAEKELRKAL 83 (899)
T ss_pred HHHHHHHHHHHHcCChHhHHHHHHHHHHhCCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 34677889999999999999999999987776 67778888888766 477777777776543
No 20
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=75.52 E-value=7.1 Score=22.92 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 025503 8 HVYLARLAEQAERYDEMVEAMKKVAKLDVE 37 (252)
Q Consensus 8 ~~~~Aklaeq~ery~dm~~~mk~~i~~~~~ 37 (252)
+..++.+..+.|+|++++.+.++.++.+|+
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 456788888999999999999999988774
No 21
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=74.61 E-value=3.8 Score=24.99 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=23.9
Q ss_pred HHHHHHHHHhccCCCCCcchHHHhhhHHHHHHHhhCChHHHHH
Q 025503 152 AYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERACH 194 (252)
Q Consensus 152 aY~~A~~~a~~~L~pt~PirLgL~LN~SVF~yEi~~~~~~A~~ 194 (252)
+|++|+++ .|.|| ....|++++|+. .|+.++|++
T Consensus 1 ~y~kAie~-----~P~n~---~a~~nla~~~~~-~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL-----NPNNA---EAYNNLANLYLN-QGDYEEAIA 34 (34)
T ss_pred ChHHHHHH-----CCCCH---HHHHHHHHHHHH-CcCHHhhcC
Confidence 36677644 35554 457889998886 699999863
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=70.28 E-value=1.3e+02 Score=31.09 Aligned_cols=54 Identities=19% Similarity=0.156 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 025503 9 VYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRILS 65 (252)
Q Consensus 9 ~~~Aklaeq~ery~dm~~~mk~~i~~~~~L~~eERnLls~ayKn~i~~~R~s~R~l~ 65 (252)
..+|.+.-..|++++++..+++++...|+-.. ...+..++.. .+....+...+.
T Consensus 87 ~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~--~~~la~~l~~-~g~~~~Al~~l~ 140 (765)
T PRK10049 87 RGLILTLADAGQYDEALVKAKQLVSGAPDKAN--LLALAYVYKR-AGRHWDELRAMT 140 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHH-CCCHHHHHHHHH
Confidence 44555555666666666666666655444333 5555555543 244455555443
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=69.35 E-value=1.3e+02 Score=31.11 Aligned_cols=31 Identities=10% Similarity=0.093 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 025503 8 HVYLARLAEQAERYDEMVEAMKKVAKLDVEL 38 (252)
Q Consensus 8 ~~~~Aklaeq~ery~dm~~~mk~~i~~~~~L 38 (252)
+..+|.++...|++++++.+++++++..|.-
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~ 82 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQN 82 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 6677888888888888888888888765543
No 24
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=69.07 E-value=59 Score=26.14 Aligned_cols=165 Identities=13% Similarity=0.058 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHhHhhhhhhhCchhHHHHHHHH
Q 025503 7 HHVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEY 86 (252)
Q Consensus 7 ~~~~~Aklaeq~ery~dm~~~mk~~i~~~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~y 86 (252)
-...++......|+|+.++..+++++...|. +..-...+...|-.. +....+...+.......+.. .........-|
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~ 109 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQL-GELEKAEDSFRRALTLNPNN-GDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHH
Confidence 3456778888889999999999999876654 334444455554432 33444444443222211110 00011111111
Q ss_pred -HHHHHHHHHHHHHHHHHHHhhcccCCCCCCchHhHHhhhhcccccccccccCccchHHHHHHHHHHHHHHHHHHhccCC
Q 025503 87 -RQRVEDELAKICNDILSVIDEHLIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKAYEAATAAAASELP 165 (252)
Q Consensus 87 -k~ki~~EL~~~c~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRY~aE~~~~~~~~~~~~~A~~aY~~A~~~a~~~L~ 165 (252)
...--++-...+..+++. |.. .....+ +.. .|..|. ..|+ .+.|...|++|+.. .
T Consensus 110 ~~~g~~~~A~~~~~~~~~~------~~~-~~~~~~-~~~-l~~~~~-----~~g~-----~~~A~~~~~~~~~~-----~ 165 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIED------PLY-PQPARS-LEN-AGLCAL-----KAGD-----FDKAEKYLTRALQI-----D 165 (234)
T ss_pred HHcccHHHHHHHHHHHHhc------ccc-ccchHH-HHH-HHHHHH-----HcCC-----HHHHHHHHHHHHHh-----C
Confidence 111112222333333321 110 011111 111 233331 1111 35688888888754 2
Q ss_pred CCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHH
Q 025503 166 PTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDE 202 (252)
Q Consensus 166 pt~PirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 202 (252)
|.+| ....+.+..++. .|+.++|+...+++.+.
T Consensus 166 ~~~~---~~~~~la~~~~~-~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 166 PQRP---ESLLELAELYYL-RGQYKDARAYLERYQQT 198 (234)
T ss_pred cCCh---HHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 3343 344556666655 79999999887776654
No 25
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=68.43 E-value=1.5e+02 Score=31.01 Aligned_cols=97 Identities=21% Similarity=0.230 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCCchHhHHhhhhccccccccccc-CccchHHHHHHHHHHHHHHHHHHhccCCCCCc
Q 025503 91 EDELAKICNDILSVIDEHLIPSSTSGESTVFYYKMKGDYYRYLAEFK-GADDRKEAADHSLKAYEAATAAAASELPPTHP 169 (252)
Q Consensus 91 ~~EL~~~c~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRY~aE~~-~~~~~~~~~~~A~~aY~~A~~~a~~~L~pt~P 169 (252)
-+|..++...+|++... .. ..-+--.+++-|=-|-..|=.. ..++|...-.++.++|++|.+ +.|+||
T Consensus 410 ~eegldYA~kai~~~~~----~~--~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~-----~d~~dp 478 (799)
T KOG4162|consen 410 VEEGLDYAQKAISLLGG----QR--SHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ-----FDPTDP 478 (799)
T ss_pred hhhHHHHHHHHHHHhhh----hh--hhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh-----cCCCCc
Confidence 35566666666654311 11 1112223355566665555443 456788888999999999974 568899
Q ss_pred chHHHhhhHHHHHHHhhCChHHHHHHHHHHHHH
Q 025503 170 IRLGLALNFSVFYYEILNSPERACHLAKQAFDE 202 (252)
Q Consensus 170 irLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 202 (252)
-...+.|++|-+ .++.+.|.+.++.++.-
T Consensus 479 ---~~if~lalq~A~-~R~l~sAl~~~~eaL~l 507 (799)
T KOG4162|consen 479 ---LVIFYLALQYAE-QRQLTSALDYAREALAL 507 (799)
T ss_pred ---hHHHHHHHHHHH-HHhHHHHHHHHHHHHHh
Confidence 334555555544 68888888888877654
No 26
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=68.41 E-value=9.7 Score=26.63 Aligned_cols=38 Identities=26% Similarity=0.286 Sum_probs=30.8
Q ss_pred CcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHHhh
Q 025503 168 HPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAEL 207 (252)
Q Consensus 168 ~PirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~l 207 (252)
||.......|.+..|++ +|+.++|+...++|++- ...+
T Consensus 1 H~~~a~~~~~la~~~~~-~~~~~~A~~~~~~al~~-~~~~ 38 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRE-LGRYDEALDYYEKALDI-EEQL 38 (78)
T ss_dssp -HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-HHHT
T ss_pred CHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH-HHHH
Confidence 78888889999999886 79999999999999888 5444
No 27
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=65.34 E-value=1.5e+02 Score=29.50 Aligned_cols=61 Identities=16% Similarity=0.264 Sum_probs=44.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHhccCC------CCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025503 140 DDRKEAADHSLKAYEAATAAAASELP------PTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFD 201 (252)
Q Consensus 140 ~~~~~~~~~A~~aY~~A~~~a~~~L~------pt~PirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (252)
..+..+++.-...|...++... .++ +..|.-+--++.|-.-+|+.+|+.++|++...+|++
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~-~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ 222 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNG-SFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE 222 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccC-CCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 4456667776777766654432 233 235777777888888899999999999999887754
No 28
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=65.15 E-value=35 Score=22.76 Aligned_cols=53 Identities=25% Similarity=0.209 Sum_probs=36.1
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhhHHHHH
Q 025503 10 YLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRIL 64 (252)
Q Consensus 10 ~~Aklaeq~ery~dm~~~mk~~i~~~~~L~~eERnLls~ayKn~i~~~R~s~R~l 64 (252)
-+|...-+.|+|++++..+++++..+|. +.+=+..+..++- ..+....|...+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~-~~g~~~~A~~~~ 54 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILY-QQGRYDEALAYY 54 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHH-HTT-HHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH-HcCCHHHHHHHH
Confidence 4678888999999999999999987755 5555556665554 334444444444
No 29
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=63.10 E-value=61 Score=26.23 Aligned_cols=70 Identities=17% Similarity=0.067 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchHHHhhhHHHHHH------HhhCChHHHHHHHHHHHHHHHHhhccCCccchHHHH
Q 025503 146 ADHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYY------EILNSPERACHLAKQAFDEAIAELDSLNEESYKDST 219 (252)
Q Consensus 146 ~~~A~~aY~~A~~~a~~~L~pt~PirLgL~LN~SVF~y------Ei~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~ 219 (252)
.+.|..+|++|+.+ .|.+ .+...|.++.++ .-+|+.+.|.....+|+.-- ...-.++.+.+.++.
T Consensus 88 ~~eA~~~~~~Al~~-----~~~~---~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~a~~~~p~~~~~~~ 158 (168)
T CHL00033 88 HTKALEYYFQALER-----NPFL---PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYW-KQAIALAPGNYIEAQ 158 (168)
T ss_pred HHHHHHHHHHHHHh-----CcCc---HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHH-HHHHHhCcccHHHHH
Confidence 35688899999865 2333 233445555554 24788888887777765432 222234555566665
Q ss_pred HHHHH
Q 025503 220 LIMQL 224 (252)
Q Consensus 220 ~Ilql 224 (252)
.-|..
T Consensus 159 ~~~~~ 163 (168)
T CHL00033 159 NWLKI 163 (168)
T ss_pred HHHHH
Confidence 54433
No 30
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=62.60 E-value=44 Score=22.44 Aligned_cols=45 Identities=22% Similarity=0.312 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q 025503 7 HHVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKN 52 (252)
Q Consensus 7 ~~~~~Aklaeq~ery~dm~~~mk~~i~~~~~L~~eERnLls~ayKn 52 (252)
.+..++.+..+.|+|++++.++++.++.+|. +.+=..-++.+|..
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~ 49 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMK 49 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 4567889999999999999999999988765 23334444444443
No 31
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=62.28 E-value=19 Score=18.82 Aligned_cols=29 Identities=28% Similarity=0.268 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 025503 8 HVYLARLAEQAERYDEMVEAMKKVAKLDV 36 (252)
Q Consensus 8 ~~~~Aklaeq~ery~dm~~~mk~~i~~~~ 36 (252)
+..++.+..+.|+|++++.++.+.+...|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34677888889999999999999887654
No 32
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=62.02 E-value=34 Score=23.27 Aligned_cols=46 Identities=22% Similarity=0.228 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHH
Q 025503 147 DHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFD 201 (252)
Q Consensus 147 ~~A~~aY~~A~~~a~~~L~pt~PirLgL~LN~SVF~yEi~~~~~~A~~iak~afd 201 (252)
+.|.++++.++.+ +|--..+.++++.+++. +|+.++|+....++..
T Consensus 12 ~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 12 EEALEVLERALEL--------DPDDPELWLQRARCLFQ-LGRYEEALEDLERALE 57 (73)
T ss_pred HHHHHHHHHHHHh--------CcccchhhHHHHHHHHH-hccHHHHHHHHHHHHH
Confidence 3455666555543 55566677788888877 6999999988887773
No 33
>KOG4759 consensus Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=60.49 E-value=42 Score=30.48 Aligned_cols=71 Identities=21% Similarity=0.273 Sum_probs=51.7
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhhHHHHHHhHhhhhhhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 025503 36 VELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVEDELAKICNDILSVIDEHL 109 (252)
Q Consensus 36 ~~L~~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~yk~ki~~EL~~~c~eii~lid~~L 109 (252)
|+.|.|-|.=|+...+.....+|.|+|-+..---+...+.... .=.+-..+++.||..+.++.+..+|..|
T Consensus 183 P~~T~E~Re~laK~~~~~~ee~K~slr~ir~~~~kk~~k~~~~---~~~D~vkkae~~l~~l~k~~v~~ld~ll 253 (263)
T KOG4759|consen 183 PPVTKESREKLAKVLKRYFEEYKQSLRKIRTKSIKKSKKNKKS---LSEDEVKKAEAELQKLAKDAVNKLDDLL 253 (263)
T ss_pred CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---CChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999998865333332221111 2245567788889988888888888764
No 34
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=60.35 E-value=19 Score=38.25 Aligned_cols=87 Identities=18% Similarity=0.075 Sum_probs=54.3
Q ss_pred HHHhhcccCCCCCCchHhHHhhhhccccc------ccccccCccchHHHHHHHHHHHHHHHHHHhccCCCCCcchHHHhh
Q 025503 103 SVIDEHLIPSSTSGESTVFYYKMKGDYYR------YLAEFKGADDRKEAADHSLKAYEAATAAAASELPPTHPIRLGLAL 176 (252)
Q Consensus 103 ~lid~~Lip~~~~~eskvfy~KmkgDyyR------Y~aE~~~~~~~~~~~~~A~~aY~~A~~~a~~~L~pt~PirLgL~L 176 (252)
+++|. +|.........||++..|||+. .+|++-.. -.-.++|..+|++++++ .|.||. +|
T Consensus 88 ~~l~~--~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk---~g~~~ka~~~yer~L~~-----D~~n~~----aL 153 (906)
T PRK14720 88 NLIDS--FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAK---LNENKKLKGVWERLVKA-----DRDNPE----IV 153 (906)
T ss_pred hhhhh--cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHH---cCChHHHHHHHHHHHhc-----CcccHH----HH
Confidence 44442 3444444566677777777763 23333211 11245789999998855 377764 55
Q ss_pred hHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 025503 177 NFSVFYYEILNSPERACHLAKQAFDEAI 204 (252)
Q Consensus 177 N~SVF~yEi~~~~~~A~~iak~afd~Ai 204 (252)
|+=-|+|.-. +.++|.+++++|+.--+
T Consensus 154 Nn~AY~~ae~-dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 154 KKLATSYEEE-DKEKAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 5555555555 99999999999977644
No 35
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=58.79 E-value=45 Score=22.27 Aligned_cols=45 Identities=18% Similarity=0.215 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHH
Q 025503 147 DHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAF 200 (252)
Q Consensus 147 ~~A~~aY~~A~~~a~~~L~pt~PirLgL~LN~SVF~yEi~~~~~~A~~iak~af 200 (252)
+.|.+.|+++++. +|-...+.++++..|+. .|+.++|..+..++.
T Consensus 8 ~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 8 DEAIELLEKALQR--------NPDNPEARLLLAQCYLK-QGQYDEAEELLERLL 52 (68)
T ss_dssp HHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 4677777777644 44455556667777777 599999888877644
No 36
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=58.75 E-value=19 Score=21.78 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh
Q 025503 8 HVYLARLAEQAERYDEMVEAMKKVAK 33 (252)
Q Consensus 8 ~~~~Aklaeq~ery~dm~~~mk~~i~ 33 (252)
+..+|++..+.|+|+.++++.++...
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45789999999999999999998553
No 37
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=58.32 E-value=42 Score=27.94 Aligned_cols=72 Identities=19% Similarity=0.190 Sum_probs=47.8
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhhHHHHHHhHhhhhhhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025503 36 VELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVEDELAKICNDILSVIDEH 108 (252)
Q Consensus 36 ~~L~~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~yk~ki~~EL~~~c~eii~lid~~ 108 (252)
|.+|.|-|.-+....|......|.+.|.+..--.+.-.+ .......-++-.++++++|..+-++.+.-||..
T Consensus 85 P~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~lkk-~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~ 156 (165)
T PF01765_consen 85 PPPTEERRKELVKQAKKIAEEAKVSIRNIRRDAMKKLKK-LKKSKEISEDDIKKLEKEIQKLTDKYIKKIDEL 156 (165)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999999886533222111 000001234555667777777777777777754
No 38
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=58.00 E-value=21 Score=23.96 Aligned_cols=33 Identities=30% Similarity=0.434 Sum_probs=26.7
Q ss_pred HhhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 025503 5 REHHVYLARLAEQAERYDEMVEAMKKVAKLDVE 37 (252)
Q Consensus 5 re~~~~~Aklaeq~ery~dm~~~mk~~i~~~~~ 37 (252)
.+-+..++.+..+.|+|++++.+++++++..|.
T Consensus 31 ~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 31 PEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 345678899999999999999999999877653
No 39
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=57.71 E-value=41 Score=28.22 Aligned_cols=72 Identities=15% Similarity=0.171 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHHhhccCCccc--hHHHHH
Q 025503 143 KEAADHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEES--YKDSTL 220 (252)
Q Consensus 143 ~~~~~~A~~aY~~A~~~a~~~L~pt~PirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~--y~ds~~ 220 (252)
.+--+.|.++|..|..+ .|.||- ...|.++-+.- +|+.+.|. ++|+.|+.--...++.. ...+..
T Consensus 82 ~g~~~~AI~aY~~A~~L-----~~ddp~---~~~~ag~c~L~-lG~~~~A~----~aF~~Ai~~~~~~~~~~~l~~~A~~ 148 (157)
T PRK15363 82 QKHWGEAIYAYGRAAQI-----KIDAPQ---APWAAAECYLA-CDNVCYAI----KALKAVVRICGEVSEHQILRQRAEK 148 (157)
T ss_pred HhhHHHHHHHHHHHHhc-----CCCCch---HHHHHHHHHHH-cCCHHHHH----HHHHHHHHHhccChhHHHHHHHHHH
Confidence 33456788899888755 344543 24555565554 68887764 67777776655444422 333666
Q ss_pred HHHHHHh
Q 025503 221 IMQLLRD 227 (252)
Q Consensus 221 IlqlLrd 227 (252)
.+..|.|
T Consensus 149 ~L~~l~~ 155 (157)
T PRK15363 149 MLQQLSD 155 (157)
T ss_pred HHHHhhc
Confidence 6666655
No 40
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=57.24 E-value=45 Score=28.83 Aligned_cols=74 Identities=20% Similarity=0.208 Sum_probs=51.0
Q ss_pred CCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHhHhhhhhhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 025503 35 DVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVEDELAKICNDILSVIDEHL 109 (252)
Q Consensus 35 ~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~yk~ki~~EL~~~c~eii~lid~~L 109 (252)
-|+||.|-|.=|.--.|...-..|-|.|.+..--... .+...+-..+-++-.++.++++..+.++.+.-||..+
T Consensus 104 ~P~lTeErRkelvK~~k~~~EeakvaiRniRrda~d~-iKK~~K~~~isEDe~k~~e~~iQKlTd~yi~~iD~~~ 177 (187)
T COG0233 104 LPPLTEERRKELVKVAKKYAEEAKVAVRNIRRDANDK-IKKLEKDKEISEDEVKKAEEEIQKLTDEYIKKIDELL 177 (187)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999885311111 0101011113356667788888888888888888754
No 41
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=53.04 E-value=40 Score=29.53 Aligned_cols=84 Identities=24% Similarity=0.336 Sum_probs=47.1
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHhHhhhhhhhCchhHHHHHHHHHHH
Q 025503 10 YLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQR 89 (252)
Q Consensus 10 ~~Aklaeq~ery~dm~~~mk~~i~~~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~yk~k 89 (252)
|+++|..+-.||+-+-..... .-+.-++|..-+-..++.-+...++.+|--..--+. .-..| .-+.+
T Consensus 123 y~~~l~~~eqry~aLK~hAee----kL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~S--------Le~~L-eQK~k 189 (207)
T PF05010_consen 123 YEERLKKEEQRYQALKAHAEE----KLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQS--------LEESL-EQKTK 189 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--------HHHHH-HHHHH
Confidence 667777777777665443332 223456666666666676666677776654210000 00111 12233
Q ss_pred HHHHHHHHHHHHHHHHh
Q 025503 90 VEDELAKICNDILSVID 106 (252)
Q Consensus 90 i~~EL~~~c~eii~lid 106 (252)
=..||..||+++|.=++
T Consensus 190 En~ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 190 ENEELTKICDELISKMG 206 (207)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34799999999987543
No 42
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=52.41 E-value=54 Score=26.55 Aligned_cols=68 Identities=18% Similarity=0.089 Sum_probs=43.4
Q ss_pred hHhHHhhhhcccccccccccCccchHHHHHHHHHHHHHHHHHHhccCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHH
Q 025503 118 STVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERACHLAK 197 (252)
Q Consensus 118 skvfy~KmkgDyyRY~aE~~~~~~~~~~~~~A~~aY~~A~~~a~~~L~pt~PirLgL~LN~SVF~yEi~~~~~~A~~iak 197 (252)
.+..++-..|-.+.-... .+.|...|++|+.+. |.++.......|.++.+.. .|+.++|+...+
T Consensus 33 ~~a~~~~~~g~~~~~~g~----------~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~-~g~~~eA~~~~~ 96 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGE----------YAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTS-NGEHTKALEYYF 96 (168)
T ss_pred HHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 445555555665543321 357889999998773 2233333455666665544 799999999988
Q ss_pred HHHH
Q 025503 198 QAFD 201 (252)
Q Consensus 198 ~afd 201 (252)
+|+.
T Consensus 97 ~Al~ 100 (168)
T CHL00033 97 QALE 100 (168)
T ss_pred HHHH
Confidence 8874
No 43
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=50.52 E-value=20 Score=33.50 Aligned_cols=48 Identities=27% Similarity=0.388 Sum_probs=40.3
Q ss_pred HHHHHhhCChHHHHHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHhhHhhhh
Q 025503 180 VFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWT 233 (252)
Q Consensus 180 VF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~IlqlLrdNl~~W~ 233 (252)
-.|-+ .|.+.+|+++.+.+.. +|.|+|+.++.-+.++-.++||+..=.
T Consensus 287 ~~yle-~g~~neAi~l~qr~lt-----ldpL~e~~nk~lm~~la~~gD~is~~k 334 (361)
T COG3947 287 RAYLE-AGKPNEAIQLHQRALT-----LDPLSEQDNKGLMASLATLGDEISAIK 334 (361)
T ss_pred HHHHH-cCChHHHHHHHHHHhh-----cChhhhHHHHHHHHHHHHhccchhhhh
Confidence 33444 6999999999999764 688999999999999999999987644
No 44
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=49.95 E-value=3.7e+02 Score=29.11 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=14.2
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh
Q 025503 9 VYLARLAEQAERYDEMVEAMKKVAK 33 (252)
Q Consensus 9 ~~~Aklaeq~ery~dm~~~mk~~i~ 33 (252)
+.+|.+..+.|+|++++...+++..
T Consensus 513 L~lA~al~~~Gr~eeAi~~~rka~~ 537 (987)
T PRK09782 513 RAVAYQAYQVEDYATALAAWQKISL 537 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 3445555566666666666666543
No 45
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=49.85 E-value=3.7e+02 Score=29.20 Aligned_cols=56 Identities=9% Similarity=-0.113 Sum_probs=35.5
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHhH
Q 025503 10 YLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSSI 67 (252)
Q Consensus 10 ~~Aklaeq~ery~dm~~~mk~~i~~~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~~ 67 (252)
.++.++-..|+|++++..+++++..+|.-. .=...|..+|.. .+....|.+.+...
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~-~a~~~Lg~~~~~-~g~~~eA~~~y~~a 411 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDS-YAVLGLGDVAMA-RKDYAAAERYYQQA 411 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence 345566678999999999999998876532 233344555532 34555555555443
No 46
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=49.79 E-value=66 Score=21.44 Aligned_cols=53 Identities=21% Similarity=0.354 Sum_probs=38.6
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHhHhhhh
Q 025503 17 QAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKE 71 (252)
Q Consensus 17 q~ery~dm~~~mk~~i~~~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~ 71 (252)
+.|+|++++..+++++..+|. +.+=+-.+..+|-.. +..-.|-+++..+....
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~-g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQ-GQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHT-T-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHC
Confidence 568999999999999988777 666666777776554 66667777776655543
No 47
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=48.07 E-value=66 Score=27.33 Aligned_cols=73 Identities=21% Similarity=0.267 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhhHHHHHHhHhhhhhhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 025503 36 VELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVEDELAKICNDILSVIDEHL 109 (252)
Q Consensus 36 ~~L~~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~yk~ki~~EL~~~c~eii~lid~~L 109 (252)
|+||.|-|.=|....|...-..|.+.|-+..---+.-.+ ..+....-++-.++++++|..+.++.+.-||..+
T Consensus 94 P~lT~E~RkelvK~~k~~~E~aKv~iRniRr~~~~~iKk-~~k~~~iseD~~k~~~~~iQkltd~~i~~id~~~ 166 (176)
T TIGR00496 94 PPLTEERRKELVKHAKKIAEQAKVAVRNVRRDANDKVKK-LEKDKEISEDEERRLQEEIQKLTDEYIKKIDEIL 166 (176)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999998888888888875311110000 0000011234556667777777777777776543
No 48
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=47.06 E-value=4.1e+02 Score=28.88 Aligned_cols=62 Identities=13% Similarity=0.045 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHhHhhh
Q 025503 8 HVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSSIEQK 70 (252)
Q Consensus 8 ~~~~Aklaeq~ery~dm~~~mk~~i~~~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~~eq~ 70 (252)
.+.+|++.-..|+|++++..++++++.+|+-..--...+.... ...+..-.+.+.+..+.+.
T Consensus 115 ~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~-~~~g~~~~A~~~L~~ll~~ 176 (1157)
T PRK11447 115 ALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVA-KLPAQRPEAINQLQRLNAD 176 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHh-hCCccHHHHHHHHHHHHHh
Confidence 4778899999999999999999998765543211111111111 1234445566666554443
No 49
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=46.91 E-value=1.1e+02 Score=22.47 Aligned_cols=27 Identities=19% Similarity=0.150 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 025503 7 HHVYLARLAEQAERYDEMVEAMKKVAK 33 (252)
Q Consensus 7 ~~~~~Aklaeq~ery~dm~~~mk~~i~ 33 (252)
.++-+|--+++.|||++++.+-+..|+
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 455667777888999999887777664
No 50
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=46.90 E-value=61 Score=27.51 Aligned_cols=73 Identities=21% Similarity=0.257 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhhHHHHHHhHhhhhhhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 025503 36 VELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVEDELAKICNDILSVIDEHL 109 (252)
Q Consensus 36 ~~L~~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~yk~ki~~EL~~~c~eii~lid~~L 109 (252)
|++|.|-|.=|....|...-..|.+.|.+..--.+.-.+ .......-++-.++.+++|..+.++.+.-||..+
T Consensus 99 P~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~~~~~lKk-~~k~~~iseD~~k~~~~~iqkltd~~i~~id~~~ 171 (179)
T cd00520 99 PPLTEERRKELVKDAKKIAEEAKVAIRNIRRDANDKIKK-LEKEKEISEDEVKKAEEDLQKLTDEYIKKIDELL 171 (179)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999988988888888888875321111000 0000001234445566777777777777666543
No 51
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=46.78 E-value=71 Score=27.36 Aligned_cols=73 Identities=23% Similarity=0.246 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhhHHHHHHhHhhhhhhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 025503 36 VELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVEDELAKICNDILSVIDEHL 109 (252)
Q Consensus 36 ~~L~~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~yk~ki~~EL~~~c~eii~lid~~L 109 (252)
|+||.|-|.=|....|...-.-|.+.|.+..--.+.-.+ ..+.-..-++-.++.++|+..+.++.+.-||..+
T Consensus 103 P~lT~E~R~elvK~~k~~~E~aKv~iRniRr~~~~~iKk-~~k~~~iseD~~k~~e~eiQkltd~~i~~id~~~ 175 (185)
T PRK00083 103 PPLTEERRKELVKQVKKEAEEAKVAIRNIRRDANDKLKK-LEKDKEISEDELKRAEDEIQKLTDKYIKKIDELL 175 (185)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999998888888888875422111000 0000001234446666777777777777776543
No 52
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=46.54 E-value=1.3e+02 Score=25.27 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhh
Q 025503 22 DEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGA 56 (252)
Q Consensus 22 ~dm~~~mk~~i~~~~~L~~eERnLls~ayKn~i~~ 56 (252)
+..++..+++++...+||.+|++.|..+...++-.
T Consensus 82 ~~~L~aa~el~ee~eeLs~deke~~~~sl~dL~~d 116 (158)
T PF10083_consen 82 ENALEAANELIEEDEELSPDEKEQFKESLPDLTKD 116 (158)
T ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHhhhHHHhhc
Confidence 34677788888888999999999999999887754
No 53
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=46.08 E-value=90 Score=22.66 Aligned_cols=50 Identities=22% Similarity=0.237 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHH
Q 025503 147 DHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDE 202 (252)
Q Consensus 147 ~~A~~aY~~A~~~a~~~L~pt~PirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 202 (252)
+.|.+.|+.++.. .|.+|......++.+..++. +|+.++|+....++++.
T Consensus 56 ~~A~~~~~~~~~~-----~p~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 56 ADAAKAFLAVVKK-----YPKSPKAPDALLKLGMSLQE-LGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHHHH-----CCCCCcccHHHHHHHHHHHH-hCChHHHHHHHHHHHHH
Confidence 4678888887743 46676555555666655555 79999999888777765
No 54
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=45.62 E-value=2.3e+02 Score=25.62 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=8.6
Q ss_pred hCChHHHHHHHHHHHH
Q 025503 186 LNSPERACHLAKQAFD 201 (252)
Q Consensus 186 ~~~~~~A~~iak~afd 201 (252)
.|+.++|+.+.++++.
T Consensus 295 ~g~~~~A~~~l~~~l~ 310 (389)
T PRK11788 295 QEGPEAAQALLREQLR 310 (389)
T ss_pred hCCHHHHHHHHHHHHH
Confidence 4555555555555443
No 55
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=44.72 E-value=2.3e+02 Score=29.37 Aligned_cols=129 Identities=14% Similarity=0.060 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh-hhhhhhhhHHHHHHhHhhhhhhhCchhHHHHHH
Q 025503 6 EHHVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYK-NVIGARRASWRILSSIEQKEEAKGNEQNVKRIK 84 (252)
Q Consensus 6 e~~~~~Aklaeq~ery~dm~~~mk~~i~~~~~L~~eERnLls~ayK-n~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~ 84 (252)
+-+.-+|.+..+.|||+|+...+..+++..|+...=-.++-.+-.+ .-+..-+...+.+- +..+. +....
T Consensus 87 ~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---~~~p~--~~~~~---- 157 (694)
T PRK15179 87 LFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---SGGSS--SAREI---- 157 (694)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---hcCCC--CHHHH----
Confidence 3456789999999999999999999999888876555554444333 22222222222211 11110 10100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCchHhHH---hhhhcccccccccccCccchHHHHHHHHHHHHHHHHHHh
Q 025503 85 EYRQRVEDELAKICNDILSVIDEHLIPSSTSGESTVFY---YKMKGDYYRYLAEFKGADDRKEAADHSLKAYEAATAAAA 161 (252)
Q Consensus 85 ~yk~ki~~EL~~~c~eii~lid~~Lip~~~~~eskvfy---~KmkgDyyRY~aE~~~~~~~~~~~~~A~~aY~~A~~~a~ 161 (252)
.-+-+.-.+ ..-+++.+.+.++.+-|...+++..+=| +|-.|+ .+.|..+|++|++...
T Consensus 158 ~~~a~~l~~-~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~-----------------~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 158 LLEAKSWDE-IGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA-----------------LWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHHHHH-hcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHhhC
Confidence 011111122 2345778888888776665545444432 333343 3578888888887763
No 56
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=44.42 E-value=56 Score=28.69 Aligned_cols=162 Identities=18% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHhHhhhhhhhCchhHHHHHHHHHHH
Q 025503 10 YLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQR 89 (252)
Q Consensus 10 ~~Aklaeq~ery~dm~~~mk~~i~~~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~yk~k 89 (252)
.+|.|+...+++++++.+..+++..++.-...-.+|... + .-+....+.+++...-++. ++.......-..-..
T Consensus 49 ~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~--~~~~~~~A~~~~~~~~~~~---~~~~~l~~~l~~~~~ 122 (280)
T PF13429_consen 49 LLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L--QDGDPEEALKLAEKAYERD---GDPRYLLSALQLYYR 122 (280)
T ss_dssp ---------------------------------------------------------------------------H-HHH
T ss_pred ccccccccccccccccccccccccccccccccccccccc-c--ccccccccccccccccccc---cccchhhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCCchHhHHhhhhcccccccccccCccchHHHHHHHHHHHHHHHHHHhccCCCCCc
Q 025503 90 VEDELAKICNDILSVIDEHLIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKAYEAATAAAASELPPTHP 169 (252)
Q Consensus 90 i~~EL~~~c~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRY~aE~~~~~~~~~~~~~A~~aY~~A~~~a~~~L~pt~P 169 (252)
..+ ..++.++|+... .....+.-..++-+.|.+|.-.-+ .++|..+|++|+++. |.||
T Consensus 123 ~~~-----~~~~~~~l~~~~--~~~~~~~~~~~~~~~a~~~~~~G~----------~~~A~~~~~~al~~~-----P~~~ 180 (280)
T PF13429_consen 123 LGD-----YDEAEELLEKLE--ELPAAPDSARFWLALAEIYEQLGD----------PDKALRDYRKALELD-----PDDP 180 (280)
T ss_dssp TT------HHHHHHHHHHHH--H-T---T-HHHHHHHHHHHHHCCH----------HHHHHHHHHHHHHH------TT-H
T ss_pred HhH-----HHHHHHHHHHHH--hccCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcC-----CCCH
Q ss_pred chHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHH
Q 025503 170 IRLGLALNFSVFYYEILNSPERACHLAKQAFDEA 203 (252)
Q Consensus 170 irLgL~LN~SVF~yEi~~~~~~A~~iak~afd~A 203 (252)
- +++.-++.+--.|+.++|..+.+..-..+
T Consensus 181 ~----~~~~l~~~li~~~~~~~~~~~l~~~~~~~ 210 (280)
T PF13429_consen 181 D----ARNALAWLLIDMGDYDEAREALKRLLKAA 210 (280)
T ss_dssp H----HHHHHHHHHCTTCHHHHHHHHHHHHHHH-
T ss_pred H----HHHHHHHHHHHCCChHHHHHHHHHHHHHC
No 57
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=44.20 E-value=37 Score=24.13 Aligned_cols=43 Identities=16% Similarity=0.149 Sum_probs=18.3
Q ss_pred HHHHHHHHhccCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHH
Q 025503 153 YEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQ 198 (252)
Q Consensus 153 Y~~A~~~a~~~L~pt~PirLgL~LN~SVF~yEi~~~~~~A~~iak~ 198 (252)
|++|+++.+. .+.+|..+....-++--+++ +|+.++|+..-++
T Consensus 41 y~~A~~~~~~--~~~~~~~~~~~~l~a~~~~~-l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 41 YEEAIELLQK--LKLDPSNPDIHYLLARCLLK-LGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHC--HTHHHCHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCCCCHHHHHHHHHHHHH-hCCHHHHHHHHhc
Confidence 4444444432 22333333333333333333 5666666665444
No 58
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=44.06 E-value=1.1e+02 Score=24.12 Aligned_cols=50 Identities=22% Similarity=0.242 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHH
Q 025503 147 DHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDE 202 (252)
Q Consensus 147 ~~A~~aY~~A~~~a~~~L~pt~PirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 202 (252)
+.|...|++|+.. .|+ .|.|-+..++.+--+- .+|++++|+.+-++++.+
T Consensus 18 ~~Ai~~Y~~Al~~---gL~--~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 18 EEAIPLYRRALAA---GLS--GADRRRALIQLASTLR-NLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHHHHHHHHc---CCC--chHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Confidence 5799999999752 344 5556566666665554 589999999999888754
No 59
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=44.00 E-value=93 Score=25.31 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHH
Q 025503 147 DHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDE 202 (252)
Q Consensus 147 ~~A~~aY~~A~~~a~~~L~pt~PirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~ 202 (252)
+.|...|++|+.+.. .+|-..-...|.++-++. +|+.++|+...++|++.
T Consensus 52 ~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 52 AEALENYEEALKLEE-----DPNDRSYILYNMGIIYAS-NGEHDKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 478899999987642 222223355666666665 79999999988887763
No 60
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=43.68 E-value=1.1e+02 Score=21.52 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh
Q 025503 8 HVYLARLAEQAERYDEMVEAMKKVAK 33 (252)
Q Consensus 8 ~~~~Aklaeq~ery~dm~~~mk~~i~ 33 (252)
++-.|--+++.|+|++++.+..+.++
T Consensus 9 l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 9 LIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556667788999999998888875
No 61
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=43.16 E-value=2.8e+02 Score=25.81 Aligned_cols=58 Identities=14% Similarity=0.070 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHh
Q 025503 7 HHVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSS 66 (252)
Q Consensus 7 ~~~~~Aklaeq~ery~dm~~~mk~~i~~~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~ 66 (252)
-+..+|.+..+.|+|++++..+.+++..+|.. .+=...+..+|-. .+....|.+.+..
T Consensus 38 a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-~~a~~~lg~~~~~-lg~~~eA~~~~~~ 95 (356)
T PLN03088 38 LYADRAQANIKLGNFTEAVADANKAIELDPSL-AKAYLRKGTACMK-LEEYQTAKAALEK 95 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHH-hCCHHHHHHHHHH
Confidence 34567777788888888888888888876653 3344555555543 4666666666654
No 62
>PRK12794 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=42.64 E-value=32 Score=27.59 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=36.1
Q ss_pred HHHhhCChHHHHHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHhhHhhhhc
Q 025503 182 YYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTS 234 (252)
Q Consensus 182 ~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~IlqlLrdNl~~W~~ 234 (252)
|-++......+.++=..+|..+...|....+..-.+....++-|..|-.+|+.
T Consensus 8 Y~~~~~~~~~~Re~E~~~l~~~~~~L~~a~~~~~~~~~~~~~AL~~NrrLWt~ 60 (122)
T PRK12794 8 YARAAQPTRTPRETEYQLLAKATRQLKDAQTNGPDRFAALAEALHFNRKLWSI 60 (122)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH
Confidence 44555555666666677788888777655544222335677999999999984
No 63
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=41.54 E-value=2.1e+02 Score=24.01 Aligned_cols=63 Identities=11% Similarity=0.034 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHhhhhhhhhhHHHHHHhHhh
Q 025503 6 EHHVYLARLAEQAERYDEMVEAMKKVAKLDVEL--TVEERNLVSVGYKNVIGARRASWRILSSIEQ 69 (252)
Q Consensus 6 e~~~~~Aklaeq~ery~dm~~~mk~~i~~~~~L--~~eERnLls~ayKn~i~~~R~s~R~l~~~eq 69 (252)
+.+..++....+.|+|++++..+.+++...|.- ..+-+..+..+|-.. +....|...+.....
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~-~~~~~A~~~~~~~l~ 98 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKS-GDYAEAIAAADRFIR 98 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Confidence 345677777888999999999999999877643 334445555555433 555566666655443
No 64
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=40.81 E-value=51 Score=22.38 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 025503 8 HVYLARLAEQAERYDEMVEAMKKVAKLDV 36 (252)
Q Consensus 8 ~~~~Aklaeq~ery~dm~~~mk~~i~~~~ 36 (252)
...+|.+..+.|+|++++..+.++++.+|
T Consensus 32 ~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 32 WLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 34566666777777777777777765544
No 65
>COG4499 Predicted membrane protein [Function unknown]
Probab=39.11 E-value=63 Score=31.13 Aligned_cols=47 Identities=30% Similarity=0.413 Sum_probs=39.7
Q ss_pred HHHhhhHHHHHHHhhCChHHHHHHHHHHH-----HHHHHhhccCCccchHHH
Q 025503 172 LGLALNFSVFYYEILNSPERACHLAKQAF-----DEAIAELDSLNEESYKDS 218 (252)
Q Consensus 172 LgL~LN~SVF~yEi~~~~~~A~~iak~af-----d~Ai~~ld~l~ee~y~ds 218 (252)
|-+++=|.+|+|-+..-.+.||.-|.+|| ++.+..++..+.+..+.+
T Consensus 231 lvl~li~~~Y~~f~~~p~qeai~~a~~aFL~~nY~qVittLe~ydp~klPks 282 (434)
T COG4499 231 LVLLLIYFTYYYFSNQPKQEAIITANTAFLKNNYDQVITTLENYDPEKLPKS 282 (434)
T ss_pred HHHHHHHHHHHHHHcChhHHHHHHHHHHHHhccHHHHhhhcccCChhhCcHH
Confidence 44678899999999999999999999995 889999998887765443
No 66
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=36.60 E-value=1.1e+02 Score=28.64 Aligned_cols=46 Identities=20% Similarity=0.151 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhc--cCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHH
Q 025503 151 KAYEAATAAAAS--ELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAF 200 (252)
Q Consensus 151 ~aY~~A~~~a~~--~L~pt~PirLgL~LN~SVF~yEi~~~~~~A~~iak~af 200 (252)
.-|++|+..++. .+.|.+| ...++.++.++. +|+.+.|+...++|+
T Consensus 50 g~~~eAl~~~~~Al~l~P~~~---~a~~~lg~~~~~-lg~~~eA~~~~~~al 97 (356)
T PLN03088 50 GNFTEAVADANKAIELDPSLA---KAYLRKGTACMK-LEEYQTAKAALEKGA 97 (356)
T ss_pred CCHHHHHHHHHHHHHhCcCCH---HHHHHHHHHHHH-hCCHHHHHHHHHHHH
Confidence 334455554433 2333332 233444444443 567666666554444
No 67
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=35.21 E-value=1.6e+02 Score=25.41 Aligned_cols=86 Identities=27% Similarity=0.345 Sum_probs=48.5
Q ss_pred cccccccccccCccchHHHHHHHHHHHHHHHHHHhccCCCCC--cchHHHhhhHHHHHHHhhCChHHHHH---HHHHHHH
Q 025503 127 GDYYRYLAEFKGADDRKEAADHSLKAYEAATAAAASELPPTH--PIRLGLALNFSVFYYEILNSPERACH---LAKQAFD 201 (252)
Q Consensus 127 gDyyRY~aE~~~~~~~~~~~~~A~~aY~~A~~~a~~~L~pt~--PirLgL~LN~SVF~yEi~~~~~~A~~---iak~afd 201 (252)
|...==++-|..+.+.++.++.|..-|++|+.+- |.-| -.-||.|+--=-|+ ..+..+|-. .|...|+
T Consensus 32 G~ALLELAqfk~g~es~~miedAisK~eeAL~I~----P~~hdAlw~lGnA~ts~A~l---~~d~~~A~~~F~kA~~~Fq 104 (186)
T PF06552_consen 32 GGALLELAQFKQGPESKKMIEDAISKFEEALKIN----PNKHDALWCLGNAYTSLAFL---TPDTAEAEEYFEKATEYFQ 104 (186)
T ss_dssp HHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHHHHhh---cCChHHHHHHHHHHHHHHH
Confidence 3333344556777888889999999999998763 1122 23456655544443 455555544 5666677
Q ss_pred HHHHhhccCCccchHHHHHH
Q 025503 202 EAIAELDSLNEESYKDSTLI 221 (252)
Q Consensus 202 ~Ai~~ld~l~ee~y~ds~~I 221 (252)
.|... .-+.+.|+.+..+
T Consensus 105 kAv~~--~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 105 KAVDE--DPNNELYRKSLEM 122 (186)
T ss_dssp HHHHH---TT-HHHHHHHHH
T ss_pred HHHhc--CCCcHHHHHHHHH
Confidence 77754 2244568776544
No 68
>PRK12793 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=35.03 E-value=42 Score=26.64 Aligned_cols=52 Identities=27% Similarity=0.357 Sum_probs=41.1
Q ss_pred HHHhhCChH-HHHHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHhhHhhhhc
Q 025503 182 YYEILNSPE-RACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTS 234 (252)
Q Consensus 182 ~yEi~~~~~-~A~~iak~afd~Ai~~ld~l~ee~y~ds~~IlqlLrdNl~~W~~ 234 (252)
|-+++.+.. .+.++=.++|..+...|....+..- ++...++-|..|-.+|+.
T Consensus 6 Ya~~~~~s~~~~R~~E~~~l~r~~~~L~~a~~~~~-~~~~~~eAL~~NrrLWt~ 58 (115)
T PRK12793 6 YAEVMEDSVASARERERQAFDRSIDLLEAARAKGA-YSREAIEALYFTRRLWTV 58 (115)
T ss_pred HHHHHHHcccChHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHH
Confidence 666777666 7778888899999988876655543 677888999999999984
No 69
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=34.50 E-value=1.8e+02 Score=21.01 Aligned_cols=44 Identities=16% Similarity=0.136 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHH
Q 025503 7 HHVYLARLAEQAERYDEMVEAMKKVAKLDV--ELTVEERNLVSVGY 50 (252)
Q Consensus 7 ~~~~~Aklaeq~ery~dm~~~mk~~i~~~~--~L~~eERnLls~ay 50 (252)
.+.-.+....+.|+|+++++.+.+++..+| .+..+-+..+..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 49 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAY 49 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 344556666667777777777777776544 34444444555554
No 70
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=34.36 E-value=6.1e+02 Score=27.53 Aligned_cols=133 Identities=15% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhh--hhHHHHHHhHhhhhhhhCchhHHHHHHH
Q 025503 8 HVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGAR--RASWRILSSIEQKEEAKGNEQNVKRIKE 85 (252)
Q Consensus 8 ~~~~Aklaeq~ery~dm~~~mk~~i~~~~~L~~eERnLls~ayKn~i~~~--R~s~R~l~~~eq~~~~~~~~~~~~~i~~ 85 (252)
++-.|+|+-+=++|--++.+.|.+.-.+|..-.+-|-...-++=+.-.+. +.||--...+.+ ..-...-.+-.
T Consensus 167 LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp-----~~v~alv~L~~ 241 (1018)
T KOG2002|consen 167 LLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDP-----TCVSALVALGE 241 (1018)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcCh-----hhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCCCchHhHHhhhhcccccccccccCccchHHHHHHHHHHHHHHHHHHhc--c
Q 025503 86 YRQRVEDELAKICNDILSVIDEHLIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKAYEAATAAAAS--E 163 (252)
Q Consensus 86 yk~ki~~EL~~~c~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRY~aE~~~~~~~~~~~~~A~~aY~~A~~~a~~--~ 163 (252)
++..-.+. ++|..|+.+... .
T Consensus 242 ~~l~~~d~---------------------------------------------------------~s~~~~~~ll~~ay~ 264 (1018)
T KOG2002|consen 242 VDLNFNDS---------------------------------------------------------DSYKKGVQLLQRAYK 264 (1018)
T ss_pred HHHHccch---------------------------------------------------------HHHHHHHHHHHHHHh
Q ss_pred CCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHHh
Q 025503 164 LPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAE 206 (252)
Q Consensus 164 L~pt~PirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ 206 (252)
..|.||.-|...-|+=+|- |+.+.++.+|-.|+..+...
T Consensus 265 ~n~~nP~~l~~LAn~fyfK----~dy~~v~~la~~ai~~t~~~ 303 (1018)
T KOG2002|consen 265 ENNENPVALNHLANHFYFK----KDYERVWHLAEHAIKNTENK 303 (1018)
T ss_pred hcCCCcHHHHHHHHHHhhc----ccHHHHHHHHHHHHHhhhhh
No 71
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=33.48 E-value=2.6e+02 Score=22.62 Aligned_cols=68 Identities=21% Similarity=0.287 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchHHHhhhHHHHHHHh------hCChHHHHHHHHHHHHHHHHhhccCCccchHHHHH
Q 025503 147 DHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEI------LNSPERACHLAKQAFDEAIAELDSLNEESYKDSTL 220 (252)
Q Consensus 147 ~~A~~aY~~A~~~a~~~L~pt~PirLgL~LN~SVF~yEi------~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ 220 (252)
+.|..+|++|+.+ .|.++ ....+.+..++.+ .++.++|....++|.+-.-..+ .++.+.|.++..
T Consensus 89 ~~A~~~~~~al~~-----~p~~~---~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~-~~~p~~~~~~~~ 159 (172)
T PRK02603 89 DKALEYYHQALEL-----NPKQP---SALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAI-RLAPNNYIEAQN 159 (172)
T ss_pred HHHHHHHHHHHHh-----CcccH---HHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHH-hhCchhHHHHHH
Confidence 5688899998865 23332 2233444444442 2345555544444433222222 234445555544
Q ss_pred HHH
Q 025503 221 IMQ 223 (252)
Q Consensus 221 Ilq 223 (252)
.+.
T Consensus 160 ~~~ 162 (172)
T PRK02603 160 WLK 162 (172)
T ss_pred HHH
Confidence 443
No 72
>PRK15331 chaperone protein SicA; Provisional
Probab=33.02 E-value=2.4e+02 Score=23.84 Aligned_cols=72 Identities=11% Similarity=0.113 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHHhhccCCccchHHHHHHHH
Q 025503 144 EAADHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQ 223 (252)
Q Consensus 144 ~~~~~A~~aY~~A~~~a~~~L~pt~PirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~Ilq 223 (252)
+--++|.++|--|.-+... .|.-|.+.| -.|=.+|++.+|.. +|.-|+..-. ..+-..-+...+.
T Consensus 85 k~y~~Ai~~Y~~A~~l~~~--dp~p~f~ag-------qC~l~l~~~~~A~~----~f~~a~~~~~--~~~l~~~A~~~L~ 149 (165)
T PRK15331 85 KQFQKACDLYAVAFTLLKN--DYRPVFFTG-------QCQLLMRKAAKARQ----CFELVNERTE--DESLRAKALVYLE 149 (165)
T ss_pred HHHHHHHHHHHHHHHcccC--CCCccchHH-------HHHHHhCCHHHHHH----HHHHHHhCcc--hHHHHHHHHHHHH
Confidence 3345677777777666533 233344444 34555899988876 7777775211 1122344667777
Q ss_pred HHHhhHh
Q 025503 224 LLRDNLT 230 (252)
Q Consensus 224 lLrdNl~ 230 (252)
.|..|..
T Consensus 150 ~l~~~~~ 156 (165)
T PRK15331 150 ALKTAET 156 (165)
T ss_pred HHHcccc
Confidence 7766654
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=32.73 E-value=3.6e+02 Score=24.04 Aligned_cols=58 Identities=17% Similarity=0.063 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 025503 8 HVYLARLAEQAERYDEMVEAMKKVAKL-DVELTVEERNLVSVGYKNVIGARRASWRILS 65 (252)
Q Consensus 8 ~~~~Aklaeq~ery~dm~~~mk~~i~~-~~~L~~eERnLls~ayKn~i~~~R~s~R~l~ 65 (252)
+.++|.+....|++++......++... ...+|.-|+..+....-...+..-.+...+.
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~ 67 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLE 67 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456677777778888877777666654 3456666665543332233333344444443
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=32.61 E-value=60 Score=29.23 Aligned_cols=46 Identities=22% Similarity=0.295 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHH
Q 025503 146 ADHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAF 200 (252)
Q Consensus 146 ~~~A~~aY~~A~~~a~~~L~pt~PirLgL~LN~SVF~yEi~~~~~~A~~iak~af 200 (252)
.+.|.+.|++|+.++-+ + =-+--||.-|++.- |.+++|...-.+|.
T Consensus 85 ~~~A~e~YrkAlsl~p~-----~---GdVLNNYG~FLC~q-g~~~eA~q~F~~Al 130 (250)
T COG3063 85 NDLADESYRKALSLAPN-----N---GDVLNNYGAFLCAQ-GRPEEAMQQFERAL 130 (250)
T ss_pred hhhHHHHHHHHHhcCCC-----c---cchhhhhhHHHHhC-CChHHHHHHHHHHH
Confidence 46789999999866432 2 22456999999995 69999877655544
No 75
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=31.71 E-value=5.6e+02 Score=25.97 Aligned_cols=31 Identities=6% Similarity=0.039 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 025503 8 HVYLARLAEQAERYDEMVEAMKKVAKLDVEL 38 (252)
Q Consensus 8 ~~~~Aklaeq~ery~dm~~~mk~~i~~~~~L 38 (252)
+..++.+..+.|++++++..+++++..+|..
T Consensus 113 ~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~ 143 (656)
T PRK15174 113 VLLVASVLLKSKQYATVADLAEQAWLAFSGN 143 (656)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 4556667777777777777777777665553
No 76
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=30.45 E-value=3.9e+02 Score=23.73 Aligned_cols=29 Identities=21% Similarity=0.418 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 025503 7 HHVYLARLAEQAERYDEMVEAMKKVAKLD 35 (252)
Q Consensus 7 ~~~~~Aklaeq~ery~dm~~~mk~~i~~~ 35 (252)
-.+..|++|-.+|+|+=+..++.++...+
T Consensus 148 ~~l~~a~~aRk~g~~~~A~~~l~~~~~~~ 176 (352)
T PF02259_consen 148 TWLKFAKLARKAGNFQLALSALNRLFQLN 176 (352)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhccC
Confidence 45788999999999999999998887643
No 77
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=30.30 E-value=88 Score=22.11 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=12.8
Q ss_pred HHHHHHHHhCCHHHHHHHHHH
Q 025503 10 YLARLAEQAERYDEMVEAMKK 30 (252)
Q Consensus 10 ~~Aklaeq~ery~dm~~~mk~ 30 (252)
.+|+...+.|+|+++++.+++
T Consensus 63 l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 63 LLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHhc
Confidence 446666666777777666654
No 78
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=29.64 E-value=2.1e+02 Score=20.29 Aligned_cols=68 Identities=10% Similarity=0.132 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHhHhhhhhhhCchhHHHHHHHHHHHHH
Q 025503 24 MVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVE 91 (252)
Q Consensus 24 m~~~mk~~i~~~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~yk~ki~ 91 (252)
...-+...+..-+.++.++|+-...-....+..-..-+..+...-+..+..........++.||..+.
T Consensus 4 l~~~i~~~l~~~~~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~ 71 (79)
T PF05008_consen 4 LTAEIKSKLERIKNLSGEQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELK 71 (79)
T ss_dssp HHHHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 34444444443344555777777777777777666655554322222211111234455666665543
No 79
>PHA01810 hypothetical protein
Probab=29.57 E-value=2.2e+02 Score=21.08 Aligned_cols=33 Identities=27% Similarity=0.438 Sum_probs=24.8
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHH
Q 025503 17 QAERYDEMVEAMKKVAKLDVELTVE-ERNLVSVG 49 (252)
Q Consensus 17 q~ery~dm~~~mk~~i~~~~~L~~e-ERnLls~a 49 (252)
...-|.+|.+.+.++++-+|..|.+ -.||.|.+
T Consensus 11 kgqaytemlqlfnkliqwnpaytfdnainlvsac 44 (100)
T PHA01810 11 KGQAYTEMLQLFNKLIQWNPAYTFDNAINLVSAC 44 (100)
T ss_pred hhHHHHHHHHHHHHHHhcCcccccchHHHHHHHH
Confidence 3445999999999999999998855 45555543
No 80
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=27.95 E-value=94 Score=29.54 Aligned_cols=47 Identities=21% Similarity=0.294 Sum_probs=42.5
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhh
Q 025503 9 VYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIG 55 (252)
Q Consensus 9 ~~~Aklaeq~ery~dm~~~mk~~i~~~~~L~~eERnLls~ayKn~i~ 55 (252)
|.+.+|.-+-|+|+-+|+....+.+.++++..|--..|..||..+=.
T Consensus 218 i~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~ 264 (389)
T COG2956 218 IILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK 264 (389)
T ss_pred hhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC
Confidence 56778888899999999999999999999999999999999987643
No 81
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=27.63 E-value=3.9e+02 Score=24.46 Aligned_cols=88 Identities=23% Similarity=0.328 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHhcc----------CCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHHHhhccCCccch
Q 025503 146 ADHSLKAYEAATAAAASE----------LPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESY 215 (252)
Q Consensus 146 ~~~A~~aY~~A~~~a~~~----------L~pt~PirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~y 215 (252)
+......|.+++...... .+.+.-..|-+.+++++|..+ .|..+.|+.+.|..++-..-.-+.+.....
T Consensus 118 v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~-aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~ 196 (321)
T PF08424_consen 118 VSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQ-AGYTERAVALWQALLEFNFFRPESLSSSSF 196 (321)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHH-CCchHHHHHHHHHHHHHHcCCccccccccH
Confidence 445677777777765432 233456788899999999999 599999999999888876633333333221
Q ss_pred HHHHHHHHHHHhhHhhhhcCCCCCc
Q 025503 216 KDSTLIMQLLRDNLTLWTSDLPEEG 240 (252)
Q Consensus 216 ~ds~~IlqlLrdNl~~W~~e~~~~~ 240 (252)
. +.++.=-.=|.++.+--|
T Consensus 197 ~------~~~~~fe~FWeS~vpRiG 215 (321)
T PF08424_consen 197 S------ERLESFEEFWESEVPRIG 215 (321)
T ss_pred H------HHHHHHHHHhCcCCCCCC
Confidence 1 334444467888766433
No 82
>PRK11189 lipoprotein NlpI; Provisional
Probab=27.54 E-value=1.3e+02 Score=27.03 Aligned_cols=31 Identities=23% Similarity=0.163 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 025503 7 HHVYLARLAEQAERYDEMVEAMKKVAKLDVE 37 (252)
Q Consensus 7 ~~~~~Aklaeq~ery~dm~~~mk~~i~~~~~ 37 (252)
-..+++++..+.|++++++.+.++++..+|.
T Consensus 238 a~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 238 TYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 4678999999999999999999999987764
No 83
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=27.43 E-value=2.2e+02 Score=19.96 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 025503 7 HHVYLARLAEQAERYDEMVEAMKKVAK 33 (252)
Q Consensus 7 ~~~~~Aklaeq~ery~dm~~~mk~~i~ 33 (252)
+++..|--.++.|+|++++.+.++.++
T Consensus 10 ~li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 10 ELISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355566667778889988888887774
No 84
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=27.20 E-value=75 Score=32.41 Aligned_cols=68 Identities=12% Similarity=0.121 Sum_probs=42.6
Q ss_pred hhhcccccccccccCccchHHHHHHHHHHHHHHHHHHhccCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHH
Q 025503 124 KMKGDYYRYLAEFKGADDRKEAADHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAF 200 (252)
Q Consensus 124 KmkgDyyRY~aE~~~~~~~~~~~~~A~~aY~~A~~~a~~~L~pt~PirLgL~LN~SVF~yEi~~~~~~A~~iak~af 200 (252)
++-++.||-+.....---|++--+.|+-.|++|++ +||.-.-++-=...++.. +|..++|+.+-.+|+
T Consensus 483 ~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--------INP~nsvi~~~~g~~~~~-~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 483 GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--------INPSNSVILCHIGRIQHQ-LKRKDKALQLYEKAI 550 (638)
T ss_pred cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--------CCccchhHHhhhhHHHHH-hhhhhHHHHHHHHHH
Confidence 34555555554433322233334566666666653 466666666667777766 799999999988885
No 85
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=27.02 E-value=2.8e+02 Score=20.88 Aligned_cols=57 Identities=18% Similarity=0.067 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhhHHHHH
Q 025503 6 EHHVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRIL 64 (252)
Q Consensus 6 e~~~~~Aklaeq~ery~dm~~~mk~~i~~~~~L~~eERnLls~ayKn~i~~~R~s~R~l 64 (252)
+....+|....+.|+|+++...+++++..+|. +.+-+..+..+|-.. +....+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~-~~~~~A~~~~ 74 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQML-KEYEEAIDAY 74 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 34567888888889999999999998887665 445555555554322 3333444443
No 86
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=27.01 E-value=2.2e+02 Score=27.12 Aligned_cols=78 Identities=21% Similarity=0.337 Sum_probs=52.2
Q ss_pred cccccccccccC---ccch----HHHHHHHHHHHHHHHHHHhccCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHH
Q 025503 127 GDYYRYLAEFKG---ADDR----KEAADHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQA 199 (252)
Q Consensus 127 gDyyRY~aE~~~---~~~~----~~~~~~A~~aY~~A~~~a~~~L~pt~PirLgL~LN~SVF~yEi~~~~~~A~~iak~a 199 (252)
++||-|+||-.. +.++ .+.-+.=.+-..++.+-|++++.- +-+| ...+|-+-||..| ||++.|.+..+.+
T Consensus 54 ap~Ye~lce~~~i~~D~~~l~~m~~~neeki~eld~~iedaeenlGE-~ev~-ea~~~kaeYycqi-gDkena~~~~~~t 130 (393)
T KOG0687|consen 54 APLYEYLCESLVIKLDQDLLNSMKKANEEKIKELDEKIEDAEENLGE-SEVR-EAMLRKAEYYCQI-GDKENALEALRKT 130 (393)
T ss_pred chHHHHHHhhcceeccHHHHHHHHHhhHHHHHHHHHHHHHHHHhcch-HHHH-HHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence 788899988432 1111 112222334566677777776654 3343 3467888888876 9999999999999
Q ss_pred HHHHHHhh
Q 025503 200 FDEAIAEL 207 (252)
Q Consensus 200 fd~Ai~~l 207 (252)
++++++--
T Consensus 131 ~~ktvs~g 138 (393)
T KOG0687|consen 131 YEKTVSLG 138 (393)
T ss_pred HHHHhhcc
Confidence 99998643
No 87
>PRK14574 hmsH outer membrane protein; Provisional
Probab=27.00 E-value=7.8e+02 Score=26.09 Aligned_cols=45 Identities=11% Similarity=0.075 Sum_probs=32.6
Q ss_pred hCChHHHHHHHHHHHHHHHH------hh-------c-cCCccchHHHHHHHHHHHhhHh
Q 025503 186 LNSPERACHLAKQAFDEAIA------EL-------D-SLNEESYKDSTLIMQLLRDNLT 230 (252)
Q Consensus 186 ~~~~~~A~~iak~afd~Ai~------~l-------d-~l~ee~y~ds~~IlqlLrdNl~ 230 (252)
.+.|++|..+-++++...-+ .+ - -++.+.|.++...++-+.++.-
T Consensus 340 ~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p 398 (822)
T PRK14574 340 RRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTP 398 (822)
T ss_pred cCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 69999999999998875410 11 1 1345779999999988888644
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=26.74 E-value=4.6e+02 Score=23.35 Aligned_cols=34 Identities=18% Similarity=0.005 Sum_probs=28.6
Q ss_pred cHhhHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 025503 4 EREHHVYLARLAEQAERYDEMVEAMKKVAKLDVE 37 (252)
Q Consensus 4 ~re~~~~~Aklaeq~ery~dm~~~mk~~i~~~~~ 37 (252)
.++-....|-++-..|+++++..++.++++..|.
T Consensus 42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~ 75 (355)
T cd05804 42 ERERAHVEALSAWIAGDLPKALALLEQLLDDYPR 75 (355)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 4666778888999999999999999999877653
No 89
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=26.51 E-value=5e+02 Score=23.83 Aligned_cols=62 Identities=18% Similarity=0.104 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh-hhhhhhhhHHHHHHhHhh
Q 025503 8 HVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYK-NVIGARRASWRILSSIEQ 69 (252)
Q Consensus 8 ~~~~Aklaeq~ery~dm~~~mk~~i~~~~~L~~eERnLls~ayK-n~i~~~R~s~R~l~~~eq 69 (252)
+..+|....-++|++..+..++++++..|-=.+.=+.|+...++ .-.+.-..+++-++....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~ 218 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLA 218 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh
Confidence 45677777788999999999999998766555555556666655 334444445555554433
No 90
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=26.14 E-value=65 Score=22.37 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=16.6
Q ss_pred HHHHHHhCCHHHHHHHHHHHHh
Q 025503 12 ARLAEQAERYDEMVEAMKKVAK 33 (252)
Q Consensus 12 Aklaeq~ery~dm~~~mk~~i~ 33 (252)
..=.-|.|+|+++.+|+++++.
T Consensus 30 I~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 30 IYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 3334478999999999999885
No 91
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=25.69 E-value=4.8e+02 Score=23.20 Aligned_cols=89 Identities=19% Similarity=0.246 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchHH-HhhhHHHHHHHhhCChHHHHHHHHHHHHHHHH--hhccCCccchHHHHHHH
Q 025503 146 ADHSLKAYEAATAAAASELPPTHPIRLG-LALNFSVFYYEILNSPERACHLAKQAFDEAIA--ELDSLNEESYKDSTLIM 222 (252)
Q Consensus 146 ~~~A~~aY~~A~~~a~~~L~pt~PirLg-L~LN~SVF~yEi~~~~~~A~~iak~afd~Ai~--~ld~l~ee~y~ds~~Il 222 (252)
.+.|.-.|.+|-.+.. .++|....+|+ +.+|+.+-.+.--++.+.|+..-++|++-.-. .++..+.+...==..|+
T Consensus 9 ~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL 87 (278)
T PF08631_consen 9 LDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSIL 87 (278)
T ss_pred HHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHH
Confidence 4578888999888875 68888999998 78899999999644999999999999887422 33333333322245567
Q ss_pred HHHHhhHhhhhcC
Q 025503 223 QLLRDNLTLWTSD 235 (252)
Q Consensus 223 qlLrdNl~~W~~e 235 (252)
++|-...-.|...
T Consensus 88 ~~La~~~l~~~~~ 100 (278)
T PF08631_consen 88 RLLANAYLEWDTY 100 (278)
T ss_pred HHHHHHHHcCCCh
Confidence 7777777777543
No 92
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=25.57 E-value=2.5e+02 Score=19.93 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 025503 7 HHVYLARLAEQAERYDEMVEAMKKVAK 33 (252)
Q Consensus 7 ~~~~~Aklaeq~ery~dm~~~mk~~i~ 33 (252)
.++-.|--.++.|+|++++.+..+.++
T Consensus 8 ~l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 8 ELVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666777888999999999988885
No 93
>PF08899 DUF1844: Domain of unknown function (DUF1844); InterPro: IPR014995 This group of proteins are functionally uncharacterised.
Probab=25.18 E-value=1.3e+02 Score=22.09 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 025503 22 DEMVEAMKKVAKLDVELTVEERNLVSVGYK 51 (252)
Q Consensus 22 ~dm~~~mk~~i~~~~~L~~eERnLls~ayK 51 (252)
=||...++. .+.+.|+.+|+.+|..+.-
T Consensus 41 ID~L~mL~e--KTkGNL~~~E~~lL~~~L~ 68 (74)
T PF08899_consen 41 IDLLAMLQE--KTKGNLDEEEERLLESALY 68 (74)
T ss_pred HHHHHHHHH--HHccCCCHHHHHHHHHHHH
Confidence 355555544 4589999999999877643
No 94
>COG2250 Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN [Function unknown]
Probab=24.68 E-value=3.7e+02 Score=21.51 Aligned_cols=102 Identities=15% Similarity=0.180 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHhc----------C-CCCCHHHHHHHHHHHhhhhhhhhhHHHHHHhHhhhhh-hh
Q 025503 7 HHVYLARLAEQAERYDEMVEAMKKVAKL----------D-VELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEE-AK 74 (252)
Q Consensus 7 ~~~~~Aklaeq~ery~dm~~~mk~~i~~----------~-~~L~~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~-~~ 74 (252)
..+-.|+..-..|.|+-++..-+|.++. + ++-|+.=+.||....+. +.....-++.+..++..-- ..
T Consensus 15 ~~l~~A~~~le~G~y~~a~f~aqQAvel~lKalL~~~~~~~p~tH~l~~Ll~~l~~~-~~~~e~~~~~~~~Le~~yi~sr 93 (132)
T COG2250 15 RDLKLAKRDLELGDYDLACFHAQQAVELALKALLIRLGGEPPKTHSLRELLRELSRE-LEVPEEILECARELEKRYILSR 93 (132)
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHh-ccCcHHHHHHHHHHHHHHhHhc
Confidence 4456677777889999988877776632 3 77888889999988774 3333333333333333211 11
Q ss_pred CchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 025503 75 GNEQN-VKRIKEYRQRVEDELAKICNDILSVIDEHL 109 (252)
Q Consensus 75 ~~~~~-~~~i~~yk~ki~~EL~~~c~eii~lid~~L 109 (252)
..+.. ......|-+..-+++......|++++...+
T Consensus 94 Y~d~~~~~p~e~~~~~~ae~~l~~A~~v~e~v~~~l 129 (132)
T COG2250 94 YPDAEYEGPLELYSKEDAEELLKTAEKVLELVEGLL 129 (132)
T ss_pred CccccccCccchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111 113466778888889999999999988654
No 95
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=24.58 E-value=7.5e+02 Score=25.07 Aligned_cols=29 Identities=10% Similarity=0.101 Sum_probs=19.4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 025503 10 YLARLAEQAERYDEMVEAMKKVAKLDVEL 38 (252)
Q Consensus 10 ~~Aklaeq~ery~dm~~~mk~~i~~~~~L 38 (252)
.++-..-+.|++++++..+++++..+|+-
T Consensus 81 ~l~~~~l~~g~~~~A~~~l~~~l~~~P~~ 109 (656)
T PRK15174 81 RWVISPLASSQPDAVLQVVNKLLAVNVCQ 109 (656)
T ss_pred HHhhhHhhcCCHHHHHHHHHHHHHhCCCC
Confidence 34444445688888888888877766654
No 96
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=24.07 E-value=1.9e+02 Score=20.98 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 025503 7 HHVYLARLAEQAERYDEMVEAMKKVAK 33 (252)
Q Consensus 7 ~~~~~Aklaeq~ery~dm~~~mk~~i~ 33 (252)
+++-.|--.+++|+|++++.+-.+.++
T Consensus 8 ~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 8 EVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 567777788889999999888877764
No 97
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=24.05 E-value=2.1e+02 Score=26.67 Aligned_cols=44 Identities=27% Similarity=0.352 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHH
Q 025503 147 DHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQA 199 (252)
Q Consensus 147 ~~A~~aY~~A~~~a~~~L~pt~PirLgL~LN~SVF~yEi~~~~~~A~~iak~a 199 (252)
+.|.+.|.+|+ .|.|+|||+.. |-|-=|-. +|..+.|++=|+.|
T Consensus 98 ~eAv~kY~~AI-----~l~P~nAVyyc---NRAAAy~~-Lg~~~~AVkDce~A 141 (304)
T KOG0553|consen 98 QEAVDKYTEAI-----ELDPTNAVYYC---NRAAAYSK-LGEYEDAVKDCESA 141 (304)
T ss_pred HHHHHHHHHHH-----hcCCCcchHHH---HHHHHHHH-hcchHHHHHHHHHH
Confidence 34666666665 36778877532 22222222 45555555555444
No 98
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=23.99 E-value=1.5e+02 Score=24.45 Aligned_cols=62 Identities=31% Similarity=0.275 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhccCCCCCcchHHHhhhHH-HHHHHhhCC---hHHHHHHHHHHHHHHHHhhcc
Q 025503 148 HSLKAYEAATAAAASELPPTHPIRLGLALNFS-VFYYEILNS---PERACHLAKQAFDEAIAELDS 209 (252)
Q Consensus 148 ~A~~aY~~A~~~a~~~L~pt~PirLgL~LN~S-VF~yEi~~~---~~~A~~iak~afd~Ai~~ld~ 209 (252)
....+|-+++.-.+..++...|+.++..|.+. ||.-+--.+ .+..-.....++++|++.+..
T Consensus 82 ~l~~~y~~~l~~l~~~~~~~~~~~~~~ll~~p~v~~~~~~~~~~~~e~~~~~l~~~l~~AL~~l~~ 147 (159)
T PF03755_consen 82 ELAKAYYEALKELAEELGLAGPISLDDLLRLPGVLKVEEEEDEEEEEELWEALLEALEEALDELIA 147 (159)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCHHHHHcCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666655678888899999999886 444122112 223457788999999888754
No 99
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=23.94 E-value=55 Score=20.70 Aligned_cols=37 Identities=27% Similarity=0.488 Sum_probs=25.8
Q ss_pred ccccccccccCccchHHHHHHHHHHHHHHHHHHhccCCCC
Q 025503 128 DYYRYLAEFKGADDRKEAADHSLKAYEAATAAAASELPPT 167 (252)
Q Consensus 128 DyyRY~aE~~~~~~~~~~~~~A~~aY~~A~~~a~~~L~pt 167 (252)
|.|--++|+.-..++. +.|.+=|++|+++=++.+||.
T Consensus 2 dv~~~Lgeisle~e~f---~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 2 DVYDLLGEISLENENF---EQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred cHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHhcCCC
Confidence 4455566666555543 478889999999987777763
No 100
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=23.34 E-value=1.5e+02 Score=16.41 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=20.1
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 025503 11 LARLAEQAERYDEMVEAMKKVAKLDVE 37 (252)
Q Consensus 11 ~Aklaeq~ery~dm~~~mk~~i~~~~~ 37 (252)
+.+-.-+.|+++++.+.++++...+-.
T Consensus 6 li~~~~~~~~~~~a~~~~~~M~~~g~~ 32 (35)
T TIGR00756 6 LIDGLCKAGRVEEALELFKEMLERGIE 32 (35)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 344456789999999999998765533
No 101
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=22.66 E-value=1.5e+02 Score=19.30 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=28.9
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcC-CCCCHHHHHHHH
Q 025503 9 VYLARLAEQAERYDEMVEAMKKVAKLD-VELTVEERNLVS 47 (252)
Q Consensus 9 ~~~Aklaeq~ery~dm~~~mk~~i~~~-~~L~~eERnLls 47 (252)
+-+|+..-..|+++.+.+.+.+++..+ ++...+=+.||.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~~~q~~eA~~LL~ 42 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEGDEAQRQEARALLA 42 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 457889999999999999999999543 334455555553
No 102
>KOG0570 consensus Transcriptional coactivator [Transcription]
Probab=22.63 E-value=4.9e+02 Score=22.94 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhhhhhhh-----hhHHHHHHh
Q 025503 41 EERNLVSVGYKNVIGAR-----RASWRILSS 66 (252)
Q Consensus 41 eERnLls~ayKn~i~~~-----R~s~R~l~~ 66 (252)
|+...+-+-..++|+.+ |.|+|+|..
T Consensus 109 edi~tifvnlHHLiNeyRPhQaResLi~lmE 139 (223)
T KOG0570|consen 109 EDIRTIFVNLHHLINEYRPHQARESLIMLME 139 (223)
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 34456667788889876 577787754
No 103
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.43 E-value=1e+02 Score=30.93 Aligned_cols=46 Identities=28% Similarity=0.346 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHH
Q 025503 146 ADHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAF 200 (252)
Q Consensus 146 ~~~A~~aY~~A~~~a~~~L~pt~PirLgL~LN~SVF~yEi~~~~~~A~~iak~af 200 (252)
-+.|.++|.+|++++ |+.||. .-|-|. .|+-+|+.++-++.+.+|+
T Consensus 131 Y~eAIkyY~~AI~l~-----p~epiF---YsNraA-cY~~lgd~~~Vied~TkAL 176 (606)
T KOG0547|consen 131 YDEAIKYYTQAIELC-----PDEPIF---YSNRAA-CYESLGDWEKVIEDCTKAL 176 (606)
T ss_pred HHHHHHHHHHHHhcC-----CCCchh---hhhHHH-HHHHHhhHHHHHHHHHHHh
Confidence 357999999998654 444653 345544 4688899999888887774
No 104
>PF08717 nsp8: nsp8 replicase; InterPro: IPR014829 Viral Nsp8 (non structural protein 8) forms a hexadecameric supercomplex with Nsp7 that adopts a hollow cylinder-like structure []. The dimensions of the central channel and positive electrostatic properties of the cylinder imply that it confers processivity on RNA-dependent RNA polymerase []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 2AHM_F 3UB0_D.
Probab=21.93 E-value=1.1e+02 Score=26.62 Aligned_cols=40 Identities=33% Similarity=0.453 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 025503 145 AADHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAI 204 (252)
Q Consensus 145 ~~~~A~~aY~~A~~~a~~~L~pt~PirLgL~LN~SVF~yEi~~~~~~A~~iak~afd~Ai 204 (252)
.-+.|.++|++|..- .-+ | ..++...+|+.|||..||.=.
T Consensus 14 ~Ye~A~~~Ye~av~n---g~~---~--------------q~~Kql~KA~NIAKse~drda 53 (199)
T PF08717_consen 14 AYETARQAYEEAVAN---GSS---P--------------QELKQLKKAMNIAKSEFDRDA 53 (199)
T ss_dssp HHHHHHHHHHHHHHC---T-----H--------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc---CCC---H--------------HHHHHHHHHHhHHHHHHhHHH
Confidence 356899999999752 111 1 235678899999999998643
No 105
>KOG3089 consensus Predicted DEAD-box-containing helicase [General function prediction only]
Probab=21.60 E-value=3.2e+02 Score=24.63 Aligned_cols=80 Identities=15% Similarity=0.210 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHhhhhhhhhhHHHHHHhHhhhhhhhCc-hhHHHHHHHHHHHHH-HHHH
Q 025503 19 ERYDEMVEAMKKVAK-LDVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGN-EQNVKRIKEYRQRVE-DELA 95 (252)
Q Consensus 19 ery~dm~~~mk~~i~-~~~~L~~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~-~~~~~~i~~yk~ki~-~EL~ 95 (252)
|-.++..++|+..+. ..++|+.+|-|+.-..+...-+.. +... +..+++ +..++.....-+|+- -++.
T Consensus 79 ~sPe~l~~ll~~yi~s~~~dl~~~EL~~~~~k~~~~~dt~-------~f~~--~~~~~n~P~~Iq~~~~~~kK~vf~~~l 149 (271)
T KOG3089|consen 79 GSPEDLQKLLKDYISSRRLDLELEELNLPDSKFLKANDTT-------HFLS--SYLKGNCPKWIQLRKNHSKKKVFVLML 149 (271)
T ss_pred CChHHHHHHHHHHHHhhcCcchhhhhcchHHHHHhhhhhh-------hhch--HhhhcccHHHHHhccCCchhhhhHHHH
Confidence 889999999999995 489999999999877665443321 1111 111122 344444444444444 7888
Q ss_pred HHHHHHHHHHhh
Q 025503 96 KICNDILSVIDE 107 (252)
Q Consensus 96 ~~c~eii~lid~ 107 (252)
-+|-++++.|+-
T Consensus 150 I~c~sa~Ral~~ 161 (271)
T KOG3089|consen 150 IICSSAVRALEL 161 (271)
T ss_pred HHHHHHHHHHhc
Confidence 899999999983
No 106
>PF11568 Med29: Mediator complex subunit 29; InterPro: IPR021018 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med29, along with Med11 and Med28, in mammals, is part of the core head-region of the complex. Med29 is the apparent orthologue of the Drosophila melanogaster Intersex protein, which interacts directly with, and functions as a transcriptional coactivator for, the DNA-binding transcription factor Doublesex, so it is likely that mammalian Med29 serves as a target for one or more DNA-binding transcriptional activators []. ; GO: 0016592 mediator complex
Probab=21.49 E-value=2.1e+02 Score=23.76 Aligned_cols=49 Identities=24% Similarity=0.457 Sum_probs=27.1
Q ss_pred HhhhhhhhhhHHHHHHh-----Hhhh------hhhhCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025503 50 YKNVIGARRASWRILSS-----IEQK------EEAKGNEQNVKRIKEYRQRVEDELAKICNDIL 102 (252)
Q Consensus 50 yKn~i~~~R~s~R~l~~-----~eq~------~~~~~~~~~~~~i~~yk~ki~~EL~~~c~eii 102 (252)
+|++|++.|.||..+.. +.|+ .+.++.+... .+|. |--+|...+|+.|=
T Consensus 10 vK~Lv~~LreSl~~~~k~AA~~l~qn~~~D~g~~~~~~d~~~---~RFd-K~lEeFysiCDQIE 69 (148)
T PF11568_consen 10 VKSLVGPLRESLSNLMKTAAQNLQQNSLVDNGTRGKSSDEPV---PRFD-KNLEEFYSICDQIE 69 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCcH---HHHH-HHHHHHHHHHHHHH
Confidence 67888888888876642 3344 1112222222 3443 33467888887763
No 107
>PF14490 HHH_4: Helix-hairpin-helix containing domain; PDB: 3GPL_A 3E1S_A 3GP8_A.
Probab=21.29 E-value=1.4e+02 Score=22.32 Aligned_cols=48 Identities=21% Similarity=0.396 Sum_probs=30.7
Q ss_pred hhhhcccccccccccCccchHHHHHHHHHHHHHHHHHHhc-cCCCCCcchHHHhhhHHHHH
Q 025503 123 YKMKGDYYRYLAEFKGADDRKEAADHSLKAYEAATAAAAS-ELPPTHPIRLGLALNFSVFY 182 (252)
Q Consensus 123 ~KmkgDyyRY~aE~~~~~~~~~~~~~A~~aY~~A~~~a~~-~L~pt~PirLgL~LN~SVF~ 182 (252)
.+++.|=|+-+.++..- .|+.|-++|.+ .+++.||-|+.-++-|.+..
T Consensus 38 ~~l~~nPY~L~~~i~gi------------~F~~aD~iA~~~g~~~~d~~Ri~A~i~~~L~~ 86 (94)
T PF14490_consen 38 EILKENPYRLIEDIDGI------------GFKTADKIALKLGIEPDDPRRIRAAILYVLRE 86 (94)
T ss_dssp HHHHH-STCCCB-SSSS------------BHHHHHHHHHTTT--TT-HHHHHHHHHHHHHH
T ss_pred HHHHHChHHHHHHccCC------------CHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 46677778887766332 25556666654 69999999999999887765
No 108
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=21.20 E-value=7.3e+02 Score=24.77 Aligned_cols=183 Identities=15% Similarity=0.203 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHH---HhhhhhhhhhHHHHHHhHhhhhhhhCchhHHHHHHHHHHHHHH-----
Q 025503 21 YDEMVEAMKKVAKLDVELTVEERNLVSVG---YKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVED----- 92 (252)
Q Consensus 21 y~dm~~~mk~~i~~~~~L~~eERnLls~a---yKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~yk~ki~~----- 92 (252)
.++.-++|+.... ..+.-.+|..+|..| |..++..-+..+..|..-.|++....+..-.+.++.||.++..
T Consensus 121 L~~v~~~~~~~~~-~~~~e~~q~~~LekAl~~~~~i~~~E~~~l~~L~~AL~kE~~~Rt~dE~~mv~~yr~ki~aL~~aI 199 (508)
T PF00901_consen 121 LEKVYKFMKGQEK-VEEEEENQIEILEKALKSYGKIVKEENKQLDRLARALQKESRERTQDERKMVEEYRQKIDALKNAI 199 (508)
T ss_pred HHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555432 344556677888776 5577788888888887777777655555566788888877643
Q ss_pred --HHHHHHHHHH-HHHhhcccCCCCCCchHhHHhhhhccccccccc-cc-CccchHHHHH---HHHHHHHHHH-------
Q 025503 93 --ELAKICNDIL-SVIDEHLIPSSTSGESTVFYYKMKGDYYRYLAE-FK-GADDRKEAAD---HSLKAYEAAT------- 157 (252)
Q Consensus 93 --EL~~~c~eii-~lid~~Lip~~~~~eskvfy~KmkgDyyRY~aE-~~-~~~~~~~~~~---~A~~aY~~A~------- 157 (252)
|=..+-.|.| +++ -|-||----.|| +. -|.--...+- -+...|+-.-
T Consensus 200 e~Er~~m~EEAiqe~~------------------dmsaeVlE~AaeEVP~vGag~At~iATaRaieg~yKLkkvI~aLtG 261 (508)
T PF00901_consen 200 EVEREGMQEEAIQEIA------------------DMSAEVLEHAAEEVPLVGAGVATGIATARAIEGAYKLKKVINALTG 261 (508)
T ss_pred HHHHhhHHHHHHHHHh------------------cccHHHHHHHhhhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 2222222222 112 233343322222 21 1222222111 2344444322
Q ss_pred -HHHhccCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHH----HHHHHHHHHhhccCCccchHHHHHHHHHHHh
Q 025503 158 -AAAASELPPTHPIRLGLALNFSVFYYEILNSPERACHLA----KQAFDEAIAELDSLNEESYKDSTLIMQLLRD 227 (252)
Q Consensus 158 -~~a~~~L~pt~PirLgL~LN~SVF~yEi~~~~~~A~~ia----k~afd~Ai~~ld~l~ee~y~ds~~IlqlLrd 227 (252)
++..-..|+.+|--|..+|-. .--.-++++...+ .+.+++--.+++.+.++..+.....++--+.
T Consensus 262 idlsHl~~P~I~p~~iet~L~~-----~~~~i~D~~L~~~v~sK~~~v~E~~~E~~Hi~~~i~P~ikk~~~e~~~ 331 (508)
T PF00901_consen 262 IDLSHLRTPKIHPGTIETILTA-----DTPEIPDKSLAQIVSSKLRHVEENEREVEHIKQEILPKIKKAAEEDSE 331 (508)
T ss_pred CChhhccCCCcCHHHHHHHHhc-----CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222235788899988877743 1100223333332 2456666667777776666555555544443
No 109
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=21.12 E-value=4.3e+02 Score=20.97 Aligned_cols=67 Identities=16% Similarity=0.233 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHHhhhhhhhhhHHHHHHhHhhhhhhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025503 38 LTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVEDELAKICNDILSV 104 (252)
Q Consensus 38 L~~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~yk~ki~~EL~~~c~eii~l 104 (252)
||.+|-|-+---.+.++...+...+.+....+..............+...+.+..++....++|-++
T Consensus 3 FTl~EA~~lLP~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~ 69 (120)
T PF09969_consen 3 FTLEEANALLPLLRPILEEIRELKAELEELEERLQELEDSLEVNGLEAELEELEARLRELIDEIEEL 69 (120)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHHHHHHc
Confidence 7888888888888888888888888887765543322111123344455566667777766666544
No 110
>PF07309 FlaF: Flagellar protein FlaF; InterPro: IPR010845 This family consists of several bacterial FlaF flagellar proteins. FlaF and FlaG are trans-acting, regulatory factors that modulate flagellin synthesis during flagellum biogenesis [].
Probab=20.76 E-value=1e+02 Score=24.20 Aligned_cols=48 Identities=21% Similarity=0.295 Sum_probs=29.1
Q ss_pred hCChHHHHHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHhhHhhhhc
Q 025503 186 LNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTS 234 (252)
Q Consensus 186 ~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~IlqlLrdNl~~W~~ 234 (252)
.+....+.++=..+|..+...|....+..-.+... ++-|.+|..+|+.
T Consensus 10 ~~~~~~~Re~E~~~l~~a~~~L~~A~~~~~~~~~~-~~AL~~N~rLW~~ 57 (113)
T PF07309_consen 10 AQSTRSPREIEARALARAARRLERAREAGPRSREA-LEALHFNRRLWTI 57 (113)
T ss_pred HHhcCChHHHHHHHHHHHHHHHHHHHhcCCCchHH-HHHHHHHHHHHHH
Confidence 33444455555667777777776554222222222 3999999999984
No 111
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.68 E-value=8.9e+02 Score=24.50 Aligned_cols=162 Identities=16% Similarity=0.159 Sum_probs=100.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHhhhhhhhhhHHHHHHhHhhhhhhhCchhHHHH
Q 025503 8 HVYLARLAEQAERYDEMVEAMKKVAKLDVELT-----VEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKR 82 (252)
Q Consensus 8 ~~~~Aklaeq~ery~dm~~~mk~~i~~~~~L~-----~eERnLls~ayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~ 82 (252)
+|++|-+.-+-+.-+.|..++......+|+=+ .-.-++++.-|++.+...-.+.+.= .+ ..-...+..
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~------pe-~~~~~iQl~ 435 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD------PE-NAYAYIQLC 435 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC------hh-hhHHHHHHH
Confidence 78888888888889999999999887766543 2366788888888888776655431 11 011223456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCchHhHHhhhhcccccccccccCccchHHHHHHHHHHHHHHHHHHhc
Q 025503 83 IKEYRQRVEDELAKICNDILSVIDEHLIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKAYEAATAAAAS 162 (252)
Q Consensus 83 i~~yk~ki~~EL~~~c~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRY~aE~~~~~~~~~~~~~A~~aY~~A~~~a~~ 162 (252)
+-.||+--..|-...-++.+. + .|++ +|.- -|.||+..+..+ -.+|.+-|..|+++...
T Consensus 436 ~a~Yr~~k~~~~m~~Fee~kk---k--FP~~--~Evy-----------~~fAeiLtDqqq---Fd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 436 CALYRQHKIAESMKTFEEAKK---K--FPNC--PEVY-----------NLFAEILTDQQQ---FDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---h--CCCC--chHH-----------HHHHHHHhhHHh---HHHHHHHHHHHHhhccc
Confidence 678888766666666555543 2 4665 4433 444887665333 35799999999998743
Q ss_pred -cCCCCCcchHHHhhhHHHHHHHhhCChHHHHHHHHHHH
Q 025503 163 -ELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAF 200 (252)
Q Consensus 163 -~L~pt~PirLgL~LN~SVF~yEi~~~~~~A~~iak~af 200 (252)
++--.+| +...+-+.....-.+|...|.++..+|+
T Consensus 495 ~~~~~v~~---~plV~Ka~l~~qwk~d~~~a~~Ll~KA~ 530 (606)
T KOG0547|consen 495 EHLIIVNA---APLVHKALLVLQWKEDINQAENLLRKAI 530 (606)
T ss_pred cccccccc---hhhhhhhHhhhchhhhHHHHHHHHHHHH
Confidence 2211121 1222333332223477778877777765
No 112
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=20.37 E-value=1.3e+02 Score=22.51 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchHH----HhhhHHHHH
Q 025503 146 ADHSLKAYEAATAAAASELPPTHPIRLG----LALNFSVFY 182 (252)
Q Consensus 146 ~~~A~~aY~~A~~~a~~~L~pt~PirLg----L~LN~SVF~ 182 (252)
+....+.-+.|++-- +..|.||..|+ +.-+|++|+
T Consensus 20 a~~~~~~l~~Al~~l--~~~pdnP~~LA~~Qa~l~eyn~~R 58 (80)
T PRK15326 20 VDNLQTQVTEALDKL--AAKPSDPALLAAYQSKLSEYNLYR 58 (80)
T ss_pred HHHHHHHHHHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHH
Confidence 444555556665443 48899999998 666777765
Done!