Query 025504
Match_columns 252
No_of_seqs 145 out of 765
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 06:31:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025504.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025504hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1021 Acetylglucosaminyltran 100.0 2.7E-50 5.9E-55 382.5 19.7 245 2-249 203-459 (464)
2 PF03016 Exostosin: Exostosin 100.0 5.5E-43 1.2E-47 313.1 13.7 195 2-203 96-302 (302)
3 KOG2264 Exostosin EXT1L [Signa 99.9 7.4E-27 1.6E-31 218.4 9.2 234 5-248 263-528 (907)
4 KOG1022 Acetylglucosaminyltran 99.8 1.2E-18 2.6E-23 162.8 7.9 210 3-219 169-386 (691)
5 PF00852 Glyco_transf_10: Glyc 98.1 6.5E-06 1.4E-10 76.2 7.3 151 48-210 140-304 (349)
6 cd03801 GT1_YqgM_like This fam 97.6 0.001 2.3E-08 58.1 11.4 95 128-225 266-363 (374)
7 cd03814 GT1_like_2 This family 97.5 0.001 2.3E-08 59.0 11.0 96 127-225 256-353 (364)
8 PLN02871 UDP-sulfoquinovose:DA 97.5 0.00094 2E-08 63.6 10.5 97 128-227 322-423 (465)
9 cd03794 GT1_wbuB_like This fam 97.3 0.0031 6.8E-08 55.8 11.7 95 128-225 285-387 (394)
10 cd03820 GT1_amsD_like This fam 97.3 0.00091 2E-08 58.3 7.8 96 128-225 243-340 (348)
11 cd03821 GT1_Bme6_like This fam 97.2 0.0037 8.1E-08 55.2 10.7 93 128-225 272-367 (375)
12 PF00534 Glycos_transf_1: Glyc 97.2 0.0017 3.7E-08 52.6 7.5 86 128-216 83-170 (172)
13 cd03818 GT1_ExpC_like This fam 97.2 0.0056 1.2E-07 56.8 11.8 95 128-225 291-388 (396)
14 KOG2619 Fucosyltransferase [Ca 97.1 0.0038 8.2E-08 58.1 10.0 154 47-207 160-320 (372)
15 cd03822 GT1_ecORF704_like This 97.1 0.0019 4.1E-08 57.5 7.8 94 128-225 258-355 (366)
16 cd05844 GT1_like_7 Glycosyltra 97.0 0.011 2.4E-07 53.3 12.0 95 128-225 255-358 (367)
17 cd04962 GT1_like_5 This family 97.0 0.0099 2.1E-07 53.7 11.5 95 128-225 261-358 (371)
18 cd03809 GT1_mtfB_like This fam 96.9 0.0067 1.4E-07 53.9 9.8 93 128-225 263-357 (365)
19 TIGR03449 mycothiol_MshA UDP-N 96.9 0.012 2.5E-07 54.5 11.4 96 128-226 293-390 (405)
20 TIGR03088 stp2 sugar transfera 96.9 0.015 3.1E-07 53.1 11.8 95 128-225 263-360 (374)
21 PRK15427 colanic acid biosynth 96.8 0.015 3.3E-07 54.6 11.7 95 128-225 289-393 (406)
22 PRK10307 putative glycosyl tra 96.7 0.011 2.3E-07 55.1 9.8 95 128-225 294-395 (412)
23 cd03799 GT1_amsK_like This is 96.7 0.023 5E-07 50.6 11.5 95 128-225 246-349 (355)
24 cd03817 GT1_UGDG_like This fam 96.7 0.038 8.1E-07 48.8 12.6 92 128-223 269-362 (374)
25 cd03798 GT1_wlbH_like This fam 96.7 0.013 2.8E-07 51.4 9.4 95 128-225 269-364 (377)
26 cd04951 GT1_WbdM_like This fam 96.6 0.027 5.9E-07 50.2 11.4 93 128-225 253-348 (360)
27 cd03804 GT1_wbaZ_like This fam 96.6 0.01 2.2E-07 53.7 8.6 72 128-203 252-323 (351)
28 cd03819 GT1_WavL_like This fam 96.6 0.0092 2E-07 53.4 8.0 95 128-225 254-353 (355)
29 cd03823 GT1_ExpE7_like This fa 96.6 0.023 4.9E-07 50.1 10.2 89 128-219 253-344 (359)
30 PRK09814 beta-1,6-galactofuran 96.5 0.0082 1.8E-07 54.8 7.4 132 82-223 169-317 (333)
31 cd03811 GT1_WabH_like This fam 96.5 0.05 1.1E-06 47.3 12.0 90 129-221 255-350 (353)
32 cd03808 GT1_cap1E_like This fa 96.5 0.011 2.4E-07 51.6 7.8 94 128-224 254-350 (359)
33 cd03800 GT1_Sucrose_synthase T 96.5 0.0079 1.7E-07 54.7 7.1 95 128-225 293-390 (398)
34 cd03806 GT1_ALG11_like This fa 96.4 0.037 8.1E-07 52.2 11.3 94 128-225 315-414 (419)
35 cd03805 GT1_ALG2_like This fam 96.4 0.045 9.8E-07 50.0 11.3 94 128-225 290-386 (392)
36 cd03807 GT1_WbnK_like This fam 96.3 0.04 8.6E-07 48.4 10.4 93 128-225 259-354 (365)
37 cd03795 GT1_like_4 This family 96.3 0.064 1.4E-06 47.7 11.5 95 128-225 254-354 (357)
38 TIGR02095 glgA glycogen/starch 96.1 0.05 1.1E-06 51.9 10.5 93 128-225 356-460 (473)
39 PRK15484 lipopolysaccharide 1, 95.9 0.059 1.3E-06 50.0 9.8 95 128-225 267-365 (380)
40 cd03825 GT1_wcfI_like This fam 95.8 0.04 8.7E-07 49.2 8.1 94 128-224 255-351 (365)
41 cd03802 GT1_AviGT4_like This f 95.8 0.082 1.8E-06 46.8 10.0 71 128-203 234-305 (335)
42 cd03796 GT1_PIG-A_like This fa 95.7 0.082 1.8E-06 49.0 9.9 95 128-227 260-357 (398)
43 TIGR02149 glgA_Coryne glycogen 95.7 0.035 7.5E-07 50.7 7.2 95 128-225 271-374 (388)
44 PRK14098 glycogen synthase; Pr 95.7 0.11 2.4E-06 50.2 11.0 95 128-226 372-474 (489)
45 cd04955 GT1_like_6 This family 95.7 0.11 2.4E-06 46.4 10.3 92 128-225 258-352 (363)
46 PRK00654 glgA glycogen synthas 95.5 0.14 3.1E-06 48.9 10.8 91 130-225 349-450 (466)
47 cd03816 GT1_ALG1_like This fam 95.4 0.21 4.6E-06 46.9 11.4 86 128-219 305-399 (415)
48 PRK14099 glycogen synthase; Pr 95.3 0.21 4.4E-06 48.3 11.3 94 129-226 360-467 (485)
49 PF13524 Glyco_trans_1_2: Glyc 95.2 0.069 1.5E-06 39.0 6.0 80 142-225 3-84 (92)
50 cd04949 GT1_gtfA_like This fam 95.1 0.068 1.5E-06 48.6 7.2 96 128-225 269-366 (372)
51 PRK09922 UDP-D-galactose:(gluc 95.1 0.14 3E-06 46.8 9.2 72 130-203 250-321 (359)
52 cd03791 GT1_Glycogen_synthase_ 94.8 0.23 4.9E-06 47.1 10.1 92 129-225 362-464 (476)
53 PLN02949 transferase, transfer 94.7 0.16 3.5E-06 48.8 8.8 94 129-225 346-444 (463)
54 PF13692 Glyco_trans_1_4: Glyc 94.6 0.037 8E-07 42.9 3.4 69 129-202 62-131 (135)
55 TIGR02472 sucr_P_syn_N sucrose 93.9 0.17 3.7E-06 47.9 6.9 94 129-225 328-428 (439)
56 cd04946 GT1_AmsK_like This fam 93.9 0.89 1.9E-05 42.6 11.7 94 129-225 300-399 (407)
57 cd03792 GT1_Trehalose_phosphor 93.8 0.29 6.3E-06 44.7 8.2 92 129-225 265-359 (372)
58 cd03812 GT1_CapH_like This fam 93.8 0.45 9.8E-06 42.4 9.2 72 128-203 257-328 (358)
59 TIGR03087 stp1 sugar transfera 93.8 0.29 6.3E-06 45.4 8.1 90 130-225 290-384 (397)
60 KOG1387 Glycosyltransferase [C 93.6 0.7 1.5E-05 43.0 9.9 92 129-222 348-443 (465)
61 PHA01633 putative glycosyl tra 93.5 0.23 5E-06 45.9 6.9 95 128-225 214-327 (335)
62 PHA01630 putative group 1 glyc 93.0 0.3 6.5E-06 44.8 6.8 42 128-170 200-241 (331)
63 PRK15490 Vi polysaccharide bio 92.9 1 2.2E-05 44.5 10.5 65 129-196 464-528 (578)
64 smart00672 CAP10 Putative lipo 92.6 1.6 3.4E-05 38.8 10.6 164 53-221 42-231 (256)
65 cd03813 GT1_like_3 This family 92.3 0.5 1.1E-05 45.2 7.5 94 128-224 361-463 (475)
66 cd04950 GT1_like_1 Glycosyltra 91.4 0.32 7E-06 44.8 5.0 68 128-202 264-336 (373)
67 TIGR02918 accessory Sec system 91.1 3.1 6.7E-05 40.4 11.7 94 129-225 384-487 (500)
68 TIGR02468 sucrsPsyn_pln sucros 90.5 0.79 1.7E-05 48.3 7.3 95 129-226 559-659 (1050)
69 TIGR00236 wecB UDP-N-acetylglu 89.9 4.2 9.2E-05 37.1 11.0 95 127-241 264-361 (365)
70 cd03793 GT1_Glycogen_synthase_ 89.3 1.3 2.8E-05 43.9 7.3 98 128-226 465-575 (590)
71 TIGR01133 murG undecaprenyldip 88.3 1.2 2.6E-05 39.9 6.1 83 130-217 243-334 (348)
72 PLN02939 transferase, transfer 88.2 1.9 4.2E-05 45.0 8.0 92 132-227 851-956 (977)
73 TIGR02470 sucr_synth sucrose s 87.6 1.9 4E-05 44.3 7.4 86 139-227 645-737 (784)
74 PRK13608 diacylglycerol glucos 86.2 3.3 7.1E-05 38.5 7.9 84 129-221 265-355 (391)
75 PRK15179 Vi polysaccharide bio 85.3 7.8 0.00017 39.4 10.5 92 129-225 583-681 (694)
76 PRK10125 putative glycosyl tra 85.2 3.2 6.9E-05 39.0 7.3 68 128-199 297-364 (405)
77 PLN02605 monogalactosyldiacylg 84.9 4.4 9.6E-05 37.4 8.0 80 129-218 274-362 (382)
78 PF05686 Glyco_transf_90: Glyc 84.4 5.1 0.00011 37.8 8.2 139 79-221 155-300 (395)
79 cd01635 Glycosyltransferase_GT 82.1 9.3 0.0002 30.9 8.1 42 128-170 172-213 (229)
80 PLN00142 sucrose synthase 81.6 5 0.00011 41.4 7.4 92 132-226 660-759 (815)
81 cd03788 GT1_TPS Trehalose-6-Ph 81.4 2.4 5.1E-05 40.7 4.8 90 128-222 351-446 (460)
82 PLN02316 synthase/transferase 79.1 6.6 0.00014 41.6 7.5 92 133-227 915-1023(1036)
83 cd03785 GT1_MurG MurG is an N- 77.6 9.3 0.0002 34.2 7.3 84 129-218 244-338 (350)
84 PLN02275 transferase, transfer 77.6 12 0.00026 34.4 8.1 77 82-170 261-341 (371)
85 COG0438 RfaG Glycosyltransfera 77.2 6.4 0.00014 33.3 5.8 42 129-171 268-309 (381)
86 PRK00726 murG undecaprenyldiph 77.1 5.1 0.00011 36.3 5.4 84 129-217 244-337 (357)
87 PRK05749 3-deoxy-D-manno-octul 76.6 4 8.6E-05 38.1 4.7 88 130-221 312-405 (425)
88 TIGR02400 trehalose_OtsA alpha 75.7 10 0.00023 36.3 7.4 86 128-219 346-438 (456)
89 PRK13609 diacylglycerol glucos 72.8 15 0.00033 33.6 7.5 83 130-219 266-353 (380)
90 PLN02846 digalactosyldiacylgly 67.7 45 0.00098 32.2 9.6 37 133-170 296-332 (462)
91 PRK00025 lpxB lipid-A-disaccha 60.7 14 0.0003 33.6 4.6 86 130-222 254-359 (380)
92 TIGR03590 PseG pseudaminic aci 59.0 35 0.00077 30.2 6.8 34 128-167 232-265 (279)
93 PLN02501 digalactosyldiacylgly 57.0 39 0.00084 34.7 7.2 37 133-170 614-650 (794)
94 PLN03063 alpha,alpha-trehalose 55.8 41 0.00088 34.8 7.4 88 129-221 367-461 (797)
95 cd02133 PA_C5a_like PA_C5a_lik 52.1 33 0.00071 27.2 4.9 74 129-202 39-114 (143)
96 PF13528 Glyco_trans_1_3: Glyc 48.2 44 0.00096 29.5 5.7 80 79-167 191-275 (318)
97 KOG3185 Translation initiation 47.0 17 0.00037 31.0 2.6 32 137-168 20-51 (245)
98 PF07038 DUF1324: Protein of u 41.6 23 0.00051 23.2 2.0 40 135-177 6-46 (59)
99 PF07429 Glyco_transf_56: 4-al 36.9 86 0.0019 29.3 5.7 82 127-221 255-336 (360)
100 PRK14501 putative bifunctional 36.7 62 0.0014 32.9 5.3 92 127-224 351-449 (726)
101 PF11440 AGT: DNA alpha-glucos 35.7 75 0.0016 29.0 4.9 76 127-202 263-349 (355)
102 COG0707 MurG UDP-N-acetylgluco 35.3 1E+02 0.0023 28.6 6.1 84 128-219 243-339 (357)
103 PF09851 SHOCT: Short C-termin 34.3 56 0.0012 19.1 2.7 26 191-216 3-30 (31)
104 cd00538 PA PA: Protease-associ 31.8 1.3E+02 0.0028 22.5 5.3 69 134-202 43-118 (126)
105 PF09671 Spore_GerQ: Spore coa 31.4 27 0.00059 25.3 1.2 10 12-21 45-54 (81)
106 COG2355 Zn-dependent dipeptida 30.4 25 0.00055 32.2 1.1 71 145-215 145-215 (313)
107 TIGR02728 spore_gerQ spore coa 29.8 29 0.00063 25.2 1.1 10 13-22 44-53 (82)
108 PF15582 Imm40: Immunity prote 29.2 73 0.0016 28.6 3.7 63 129-213 260-323 (327)
109 PF06258 Mito_fiss_Elm1: Mitoc 29.2 1.3E+02 0.0028 27.4 5.6 38 127-168 218-255 (311)
110 cd02130 PA_ScAPY_like PA_ScAPY 28.7 1.4E+02 0.0031 22.7 5.0 36 136-171 43-78 (122)
111 cd04818 PA_subtilisin_1 PA_sub 27.7 1.7E+02 0.0036 22.1 5.2 66 136-201 39-109 (118)
112 PRK11865 pyruvate ferredoxin o 27.1 84 0.0018 28.6 3.9 62 156-222 229-295 (299)
113 COG0297 GlgA Glycogen synthase 26.0 79 0.0017 30.9 3.7 103 127-231 358-471 (487)
114 PF11460 DUF3007: Protein of u 25.9 66 0.0014 24.7 2.5 22 195-216 82-103 (104)
115 PF08621 RPAP1_N: RPAP1-like, 25.1 1.1E+02 0.0023 20.1 3.1 21 197-217 9-29 (49)
116 COG2247 LytB Putative cell wal 24.7 85 0.0018 29.0 3.4 42 129-172 124-165 (337)
117 cd04817 PA_VapT_like PA_VapT_l 22.5 2.3E+02 0.005 22.7 5.3 35 137-171 56-95 (139)
118 PF10550 Toxin_36: Conantokin- 21.6 1.2E+02 0.0026 14.8 2.1 13 205-217 2-14 (15)
119 cd04936 ACT_AKii-LysC-BS-like_ 20.4 1.1E+02 0.0025 19.5 2.7 42 151-201 17-58 (63)
120 COG3028 Uncharacterized protei 20.4 1.5E+02 0.0032 24.9 3.8 49 195-243 133-181 (187)
No 1
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=100.00 E-value=2.7e-50 Score=382.46 Aligned_cols=245 Identities=44% Similarity=0.787 Sum_probs=211.6
Q ss_pred cccCCccccCCCCCcEEEEeccCCCchhHHHH---Hhhhhhhhhc-CCCCCCcccC-CccccCCccccCCCCccc--ccC
Q 025504 2 ISAKHNFWNRTEGADHFLVACHDWAPAETRII---MANCIRALCN-SDVKQGFVFG-KDVSLPETNVLSPQNPLW--AIG 74 (252)
Q Consensus 2 i~~~~PyWnr~~G~DH~~v~~~d~~~~~~~~~---~~n~~~~l~~-~~~~~~~rp~-~DvviP~~~~~~p~~~~~--~~~ 74 (252)
+.+++|||||++|+||||+.+|+|+....... ..+.+..+++ ++.+..+.+. +||+||+.+..||..+.. ...
T Consensus 203 ~~~~~p~W~Rs~G~DH~~v~~~~~~~~~~~~~~~~~~~~i~~~~n~a~ls~~~~~~~~dv~iP~~~~~~~~~~~~~~~~~ 282 (464)
T KOG1021|consen 203 LLSKQPYWNRSSGRDHFFVACHDWGDFRRRSDWGASISLIPEFCNGALLSLEFFPWNKDVAIPYPTIPHPLSPPENSWQG 282 (464)
T ss_pred HHhcCchhhccCCCceEEEeCCcchheeeccchhhHHHHHHhhCCcceeecccccCCCcccCCCccCcCccCcccccccc
Confidence 35789999999999999999999997765432 2334444555 4566778888 999999998888766442 233
Q ss_pred CCCCCCCceEEEeecc-CCCCchHHHHHHhhcCCCCcEEeecCCCCCCCCcccCcchHHHhhccceEEEeecCCCCCChh
Q 025504 75 GKPASQRSILAFFAGS-MHGYLRPILLHHWENKDPDMKIFGQMPKAKGRGKRKGKTDYIQHMKSSKYCICAKGYEVHSPR 153 (252)
Q Consensus 75 ~~~~~~R~~L~~F~G~-~~g~~R~~L~~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~y~~~~~~S~FCL~p~G~~~~s~r 153 (252)
.....+|++|++|+|+ .+|.+|+.|.++|++ +++......|+... +.+.+...|.+.|++|+|||||+|++++|.|
T Consensus 283 ~~~~~~R~~L~~F~G~~~~~~iR~~L~~~~~~-~~~~~~~~~~~~g~--~~~~~~~~y~~~m~~S~FCL~p~Gd~~ts~R 359 (464)
T KOG1021|consen 283 GVPFSNRPILAFFAGAPAGGQIRSILLDLWKK-DPDTEVFVNCPRGK--VSCDRPLNYMEGMQDSKFCLCPPGDTPTSPR 359 (464)
T ss_pred CCCCCCCceEEEEeccccCCcHHHHHHHHhhc-CcCccccccCCCCc--cccCCcchHHHHhhcCeEEECCCCCCcccHh
Confidence 4566899999999999 899999999999998 55666667787543 3345788999999999999999999999999
Q ss_pred HHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhH-HHHHhcCCHHHHHHHHHHHHH-HhhhceeCC--CCC
Q 025504 154 VVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNL-KNILLSISEKRYRKMQMMVKK-VQQHFLWHP--RPV 229 (252)
Q Consensus 154 l~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l-~~~L~~i~~~~~~~m~~~~~~-~~~~f~~~~--~~~ 229 (252)
++|||.+|||||||+|++.+||++++||++|||+|++++++++ .++|.+++.+++.+||+++.+ +.++|.+.. +.+
T Consensus 360 ~fdai~~gCvPViisd~~~lpf~~~~d~~~fSV~v~~~~v~~~~~~iL~~i~~~~~~~m~~~v~~~v~r~~~~~~~~~~~ 439 (464)
T KOG1021|consen 360 LFDAIVSGCVPVIISDGIQLPFGDVLDWTEFSVFVPEKDVPELIKNILLSIPEEEVLRMRENVIRLVPRHFLKKPPGPPK 439 (464)
T ss_pred HHHHHHhCCccEEEcCCcccCcCCCccceEEEEEEEHHHhhhHHHHHHHhcCHHHHHHHHHHHHHHHHhhEEeCCCCCCC
Confidence 9999999999999999999999999999999999999999988 999999999999999999994 999999998 788
Q ss_pred CcCHHHHHHHHHHHhhhhcc
Q 025504 230 KYDIFHMILHSIWYNRVFLA 249 (252)
Q Consensus 230 ~~daf~~~~~~l~~r~~~~~ 249 (252)
.+||||++++++|.|+++..
T Consensus 440 ~~da~~~~~~~v~~r~~~~~ 459 (464)
T KOG1021|consen 440 RGDAFHMILHSLWRRLHKLR 459 (464)
T ss_pred cchhHHHHHhhhhhcccccc
Confidence 99999999999999999876
No 2
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=100.00 E-value=5.5e-43 Score=313.10 Aligned_cols=195 Identities=34% Similarity=0.601 Sum_probs=150.5
Q ss_pred cccCCccccCCCCCcEEEEeccCCCchhHHH---HHhhhhhhh-hcCC-CCCCcccCCccccCCccccCCCCcccccCCC
Q 025504 2 ISAKHNFWNRTEGADHFLVACHDWAPAETRI---IMANCIRAL-CNSD-VKQGFVFGKDVSLPETNVLSPQNPLWAIGGK 76 (252)
Q Consensus 2 i~~~~PyWnr~~G~DH~~v~~~d~~~~~~~~---~~~n~~~~l-~~~~-~~~~~rp~~DvviP~~~~~~p~~~~~~~~~~ 76 (252)
+.+++|||||++|+||||++++|+|.+.... ...+.+.++ ..+. ...+|+|++||++|+....++..........
T Consensus 96 ~~~~~p~w~r~~G~dH~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~P~~~~~~~~~~~~~~~~~ 175 (302)
T PF03016_consen 96 LLASYPYWNRSGGRDHFFVNSHDRGGCSFDRNPRLMNNSIRAVVAFSSFSSSCFRPGFDIVIPPFVPPSSLPDWRPWPQR 175 (302)
T ss_pred HHhcCchhhccCCCCeEEEeccccccccccccHhhhccchhheeccCCCCcCcccCCCCeeccccccccccCCccccccC
Confidence 3567899999999999999999977664332 334444444 2333 3567999999999996422221111111245
Q ss_pred CCCCCceEEEeeccCC-------CCchHHHHHHhhcCCCCcEEeecCCCCCCCCcccCcchHHHhhccceEEEeecCCCC
Q 025504 77 PASQRSILAFFAGSMH-------GYLRPILLHHWENKDPDMKIFGQMPKAKGRGKRKGKTDYIQHMKSSKYCICAKGYEV 149 (252)
Q Consensus 77 ~~~~R~~L~~F~G~~~-------g~~R~~L~~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~y~~~~~~S~FCL~p~G~~~ 149 (252)
++.+|++|++|+|++. +.+|..|.+.+++.+ +..+.. . ........+|.+.|++|+|||+|+|+++
T Consensus 176 ~~~~R~~l~~f~g~~~~~~~~~~~~~r~~l~~~~~~~~-~~~~~~-~-----~~~~~~~~~~~~~l~~S~FCL~p~G~~~ 248 (302)
T PF03016_consen 176 PPARRPYLLFFAGTIRPSSNDYSGGVRQRLLDECKSDP-DFRCSD-G-----SETCPSPSEYMELLRNSKFCLCPRGDGP 248 (302)
T ss_pred CccCCceEEEEeeeccccccccchhhhhHHHHhcccCC-cceeee-c-----ccccccchHHHHhcccCeEEEECCCCCc
Confidence 6789999999999873 258899998887643 433221 1 0111246679999999999999999999
Q ss_pred CChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhcC
Q 025504 150 HSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSI 203 (252)
Q Consensus 150 ~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i 203 (252)
++.||+|||++|||||||+|++.|||+++|||++|+|+|+++++++|+++|++|
T Consensus 249 ~s~Rl~eal~~GcIPVii~d~~~lPf~~~ldw~~fsv~v~~~~~~~l~~iL~~i 302 (302)
T PF03016_consen 249 WSRRLYEALAAGCIPVIISDDYVLPFEDVLDWSRFSVRVPEADLPELPEILRSI 302 (302)
T ss_pred ccchHHHHhhhceeeEEecCcccCCcccccCHHHEEEEECHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999986
No 3
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=99.94 E-value=7.4e-27 Score=218.42 Aligned_cols=234 Identities=17% Similarity=0.229 Sum_probs=159.9
Q ss_pred CCccccCCCCCcEEEEeccCCCchhHHHHHh--hhhhh-hhcCC-CCCCcccCCccccCCccccCCCCc--ccccCCCCC
Q 025504 5 KHNFWNRTEGADHFLVACHDWAPAETRIIMA--NCIRA-LCNSD-VKQGFVFGKDVSLPETNVLSPQNP--LWAIGGKPA 78 (252)
Q Consensus 5 ~~PyWnr~~G~DH~~v~~~d~~~~~~~~~~~--n~~~~-l~~~~-~~~~~rp~~DvviP~~~~~~p~~~--~~~~~~~~~ 78 (252)
++||| |++|+||+++|..-- +-....+. +++++ ++.+. +...||||+|+++|+ +.|+... +.++....+
T Consensus 263 slp~w-~~dg~Nhvl~Nl~r~--s~~~n~lyn~~t~raivvQssf~~~q~RpgfDl~V~p--v~h~~~e~~~~e~~p~vP 337 (907)
T KOG2264|consen 263 SLPHW-RTDGFNHVLFNLGRP--SDTQNLLYNFQTGRAIVVQSSFYTVQIRPGFDLPVDP--VNHIAVEKNFVELTPLVP 337 (907)
T ss_pred cCccc-cCCCcceEEEEccCc--cccccceeEeccCceEEEeecceeeeeccCCCcccCc--ccccccCccceecCcccc
Confidence 57999 599999999997632 11111221 23333 23333 344699999999998 3455332 233344568
Q ss_pred CCCceEEEeeccCCC---C---chHHHHHHhhcC-------CCCcEE--eecCCCCC-----CCCcccCcchHHHhhccc
Q 025504 79 SQRSILAFFAGSMHG---Y---LRPILLHHWENK-------DPDMKI--FGQMPKAK-----GRGKRKGKTDYIQHMKSS 138 (252)
Q Consensus 79 ~~R~~L~~F~G~~~g---~---~R~~L~~~~~~~-------~~~~~v--~~~~~~~~-----g~~~~~~~~~y~~~~~~S 138 (252)
.+|+||+.|+|.+.+ . .+....+...+- ++-+.| .-+|.+.. .|..+....+-.++++.|
T Consensus 338 ~~RkyL~t~qgki~~~~ssLn~~~aF~~e~~adp~~~a~qds~i~qv~c~~t~k~Qe~~SLpewalcg~~~~RrqLlk~S 417 (907)
T KOG2264|consen 338 FQRKYLITLQGKIESDNSSLNEFSAFSEELSADPSRRAVQDSPIVQVKCSFTCKNQENCSLPEWALCGERERRRQLLKSS 417 (907)
T ss_pred hhhheeEEEEeeecccccccchhhhhHHHhccCCcccccccCceEEEEEeeccccCCCCCcchhhhccchHHHHHHhccc
Confidence 899999999997732 1 222222222211 111222 22354432 233344667788999999
Q ss_pred eEEEe-ecCCCC-----CChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhcCCHHHHHHHH
Q 025504 139 KYCIC-AKGYEV-----HSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSISEKRYRKMQ 212 (252)
Q Consensus 139 ~FCL~-p~G~~~-----~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~~~~~~~m~ 212 (252)
+|||+ |+|++- .-.|++||+..||||||+++...|||++.|||.+.++++|.+++.+++-+|+++.++++.+||
T Consensus 418 TF~lilpp~d~rv~S~~~~~r~~eaL~~GavPviLg~~~~LPyqd~idWrraal~lPkaR~tE~HFllrs~~dsDll~mR 497 (907)
T KOG2264|consen 418 TFCLILPPGDPRVISEMFFQRFLEALQLGAVPVILGNSQLLPYQDLIDWRRAALRLPKARLTEAHFLLRSFEDSDLLEMR 497 (907)
T ss_pred eeEEEecCCCcchhhHHHHHHHHHHHhcCCeeEEeccccccchHHHHHHHHHhhhCCccccchHHHHHHhcchhhHHHHH
Confidence 99998 778852 247999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhceeCCCCCCcCHHHHHHHHHHHhhhhc
Q 025504 213 MMVKKVQQHFLWHPRPVKYDIFHMILHSIWYNRVFL 248 (252)
Q Consensus 213 ~~~~~~~~~f~~~~~~~~~daf~~~~~~l~~r~~~~ 248 (252)
++++-+|+.++- ...-.+.+++..| +-|+.+
T Consensus 498 RqGRl~wEtYls----~~~~~~~tvlA~l-R~rlqI 528 (907)
T KOG2264|consen 498 RQGRLFWETYLS----DRHLLARTVLAAL-RYRLQI 528 (907)
T ss_pred hhhhhhHHHHhh----HHHHHHHHHHHHH-HHhhCC
Confidence 977766666432 1223355666665 444444
No 4
>KOG1022 consensus Acetylglucosaminyltransferase EXT2/exostosin 2 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.76 E-value=1.2e-18 Score=162.84 Aligned_cols=210 Identities=16% Similarity=0.168 Sum_probs=159.2
Q ss_pred ccCCccccCCCCCcEEEEeccCCCc-hhHHHHHhhhhhhh-hcCCC-CCCcccCCccccCCccccCCCCcccccCCCCCC
Q 025504 3 SAKHNFWNRTEGADHFLVACHDWAP-AETRIIMANCIRAL-CNSDV-KQGFVFGKDVSLPETNVLSPQNPLWAIGGKPAS 79 (252)
Q Consensus 3 ~~~~PyWnr~~G~DH~~v~~~d~~~-~~~~~~~~n~~~~l-~~~~~-~~~~rp~~DvviP~~~~~~p~~~~~~~~~~~~~ 79 (252)
.++.-.|+| |.||..+++.+.|+ .+.+....+...++ ..+.+ ...||+++||.||..+ |.. .......+.
T Consensus 169 la~l~~wdr--g~nH~~fnmLpGg~p~yntaldv~~d~a~~~gggf~tW~yr~g~dv~ipv~S---p~~--v~~~~~~~g 241 (691)
T KOG1022|consen 169 LAKLLVWDR--GVNHEGFNMLPGGDPTYNTALDVGQDEAWYSGGGFGTWKYRKGNDVYIPVRS---PGN--VGRAFLYDG 241 (691)
T ss_pred Hhcccchhc--ccceeeEeeccCCCCCccccccCCcceeEEecCCcCcccccCCCcccccccc---ccc--cCccccCCc
Confidence 466779999 99999999887663 33222222222222 23333 3469999999999954 421 111123456
Q ss_pred CCceEEEeecc-CCCCchHHHHHHhhcCCCCcEEeecCCCCC----CCCcccCcchHHHhhccceEEEeecCCCCCChhH
Q 025504 80 QRSILAFFAGS-MHGYLRPILLHHWENKDPDMKIFGQMPKAK----GRGKRKGKTDYIQHMKSSKYCICAKGYEVHSPRV 154 (252)
Q Consensus 80 ~R~~L~~F~G~-~~g~~R~~L~~~~~~~~~~~~v~~~~~~~~----g~~~~~~~~~y~~~~~~S~FCL~p~G~~~~s~rl 154 (252)
.|.+++.-.|- .+..+|..|.+++.+.+....+...|.+.. +.|..+..-+|...+...+||+.-+|.+....-+
T Consensus 242 ~r~~~l~~~q~n~~pr~r~~l~el~~kh~e~~l~l~~c~nlsl~~r~~~qhH~~~~yp~~l~~~~fc~~~R~~r~gq~~l 321 (691)
T KOG1022|consen 242 SRYRVLQDCQENYGPRIRVSLIELLSKHEERELELPFCLNLSLNSRGVRQHHFDVKYPSSLEFIGFCDGDRVTRGGQFHL 321 (691)
T ss_pred cceeeeeccccccchHhHHhHHHHHhhccceEEecchhccccccccchhhcccccccccccceeeeEeccccccCCccce
Confidence 77777766653 355688888888777766677777785532 3344455678999999999999999999889999
Q ss_pred HHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhcCCHHHHHHHHHHHHHHh
Q 025504 155 VEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSISEKRYRKMQMMVKKVQ 219 (252)
Q Consensus 155 ~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~~~~~~~m~~~~~~~~ 219 (252)
.+-+.+||+|||+.|.+.+||++++||...||+++|..+..+...|++++...+.+||.+..-.+
T Consensus 322 v~~~~a~c~pvi~vd~y~lpf~~Vvdw~~aSv~~~e~~~~~v~~~l~~i~~~~i~sl~~r~~~~r 386 (691)
T KOG1022|consen 322 VILGYASCAPVISVDIYLLPFLGVVDWIVASVWCMEYYAGKVMDALLNIETAGICSLQLRRIGSR 386 (691)
T ss_pred ehhhhcccceeeeeehhhhhhhhhhhceeeeEEeehhhHHHHHHHhhcchhcchhhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999988655433
No 5
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=98.12 E-value=6.5e-06 Score=76.17 Aligned_cols=151 Identities=11% Similarity=0.188 Sum_probs=74.6
Q ss_pred CCcccCCccccCCccccCCCCccc--ccCCCCCCCCceEEEeeccCCC-CchHHHHHHhhcCCCCcEEeecC-CCCCCCC
Q 025504 48 QGFVFGKDVSLPETNVLSPQNPLW--AIGGKPASQRSILAFFAGSMHG-YLRPILLHHWENKDPDMKIFGQM-PKAKGRG 123 (252)
Q Consensus 48 ~~~rp~~DvviP~~~~~~p~~~~~--~~~~~~~~~R~~L~~F~G~~~g-~~R~~L~~~~~~~~~~~~v~~~~-~~~~g~~ 123 (252)
-+||.+-||.+|+.....-..... .+......+.+..++++..+.+ ..|..+++.+.+. -.|.++|.| ++..
T Consensus 140 MTYr~dSDi~~py~~~~~~~~~~~~~~~~~~~~~K~~~~~w~~Snc~~~~~R~~~~~~L~~~-~~vd~yG~c~~~~~--- 215 (349)
T PF00852_consen 140 MTYRRDSDIPLPYGYFSPRESPSEKDDLPNILKKKTKLAAWIVSNCNPHSGREEYVRELSKY-IPVDSYGKCGNNNP--- 215 (349)
T ss_dssp ---------------------------------TSSEEEEE--S-S--H-HHHHHHHHHHTT-S-EEE-SSTT--SS---
T ss_pred cccccccccccccccccccccccccccccccccCCCceEEEEeeCcCCcccHHHHHHHHHhh-cCeEccCCCCCCCC---
Confidence 459999999999964221110111 1111123344566667776643 3588888888776 578889998 2221
Q ss_pred cccCcchHHHhhccceEEEeecCC---CCCChhHHHHhhcCceeEEec--CC-C--CCCCCCCCCCCceEEEEcCCChhh
Q 025504 124 KRKGKTDYIQHMKSSKYCICAKGY---EVHSPRVVEAIFYECVPVIIS--DN-F--VPPFFEILNWESFAVFVLERDIPN 195 (252)
Q Consensus 124 ~~~~~~~y~~~~~~S~FCL~p~G~---~~~s~rl~eal~~GCIPVii~--d~-~--~lPf~~~idw~~fsv~i~~~~~~~ 195 (252)
.......+.+++-+|.|+..-. +--+--|++|+.+|||||+++ .. + .+|=...|+.++|. ...+
T Consensus 216 --~~~~~~~~~~~~ykF~lafENs~c~dYiTEK~~~al~~g~VPI~~G~~~~~~~~~~P~~SfI~~~df~------s~~~ 287 (349)
T PF00852_consen 216 --CPRDCKLELLSKYKFYLAFENSNCPDYITEKFWNALLAGTVPIYWGPPRPNYEEFAPPNSFIHVDDFK------SPKE 287 (349)
T ss_dssp --S--S-HHHHHHTEEEEEEE-SS--TT---HHHHHHHHTTSEEEEES---TTHHHHS-GGGSEEGGGSS------SHHH
T ss_pred --cccccccccccCcEEEEEecCCCCCCCCCHHHHHHHHCCeEEEEECCEecccccCCCCCCccchhcCC------CHHH
Confidence 1234488999999999997543 456889999999999999999 32 2 26657788877764 5677
Q ss_pred HHHHHhcCC--HHHHHH
Q 025504 196 LKNILLSIS--EKRYRK 210 (252)
Q Consensus 196 l~~~L~~i~--~~~~~~ 210 (252)
|.+.|+.+. ++.+.+
T Consensus 288 La~yl~~l~~n~~~Y~~ 304 (349)
T PF00852_consen 288 LADYLKYLDKNDELYNK 304 (349)
T ss_dssp HHHHHHHHHT-HHHHH-
T ss_pred HHHHHHHHhcCHHHHhh
Confidence 888888874 444443
No 6
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=97.56 E-value=0.001 Score=58.05 Aligned_cols=95 Identities=19% Similarity=0.260 Sum_probs=71.3
Q ss_pred cchHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhcC--CH
Q 025504 128 KTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSI--SE 205 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i--~~ 205 (252)
..++.+.|.+|.+.++|.-....+..++||+++|| |||.++. -.+.+.+.-....+.++..+..++.+.|..+ .+
T Consensus 266 ~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~-pvI~~~~--~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~ 342 (374)
T cd03801 266 DEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGL-PVVASDV--GGIPEVVEDGETGLLVPPGDPEALAEAILRLLDDP 342 (374)
T ss_pred hhhHHHHHHhcCEEEecchhccccchHHHHHHcCC-cEEEeCC--CChhHHhcCCcceEEeCCCCHHHHHHHHHHHHcCh
Confidence 47789999999999999866667789999999998 6777665 3345556556777888888777777776664 46
Q ss_pred HHHHHHHHHHH-HHhhhceeC
Q 025504 206 KRYRKMQMMVK-KVQQHFLWH 225 (252)
Q Consensus 206 ~~~~~m~~~~~-~~~~~f~~~ 225 (252)
+...+|.++.+ .+.+.|.|+
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~ 363 (374)
T cd03801 343 ELRRRLGEAARERVAERFSWD 363 (374)
T ss_pred HHHHHHHHHHHHHHHHhcCHH
Confidence 67778888777 556666554
No 7
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.52 E-value=0.001 Score=58.95 Aligned_cols=96 Identities=16% Similarity=0.152 Sum_probs=70.0
Q ss_pred CcchHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhcC--C
Q 025504 127 GKTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSI--S 204 (252)
Q Consensus 127 ~~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i--~ 204 (252)
...+..+.|+.|.+++.|.........++|||++|| |||.++.-- ..+++.=.+..+.++..+..++.+.+..+ .
T Consensus 256 ~~~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~-PvI~~~~~~--~~~~i~~~~~g~~~~~~~~~~l~~~i~~l~~~ 332 (364)
T cd03814 256 DGEELAAAYASADVFVFPSRTETFGLVVLEAMASGL-PVVAPDAGG--PADIVTDGENGLLVEPGDAEAFAAALAALLAD 332 (364)
T ss_pred CHHHHHHHHHhCCEEEECcccccCCcHHHHHHHcCC-CEEEcCCCC--chhhhcCCcceEEcCCCCHHHHHHHHHHHHcC
Confidence 356788899999999999888777889999999999 788877432 23444334566677777776555555543 4
Q ss_pred HHHHHHHHHHHHHHhhhceeC
Q 025504 205 EKRYRKMQMMVKKVQQHFLWH 225 (252)
Q Consensus 205 ~~~~~~m~~~~~~~~~~f~~~ 225 (252)
++...+|.++..+..+.+.|+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~ 353 (364)
T cd03814 333 PELRRRMAARARAEAERRSWE 353 (364)
T ss_pred HHHHHHHHHHHHHHHhhcCHH
Confidence 778888888888777666654
No 8
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=97.46 E-value=0.00094 Score=63.63 Aligned_cols=97 Identities=14% Similarity=0.147 Sum_probs=74.2
Q ss_pred cchHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCC---CceEEEEcCCChhhHHHHHhcC-
Q 025504 128 KTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNW---ESFAVFVLERDIPNLKNILLSI- 203 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw---~~fsv~i~~~~~~~l~~~L~~i- 203 (252)
..+..+.|+.+..++.|......+.-++|||++| +|||.++.-- ..++++= .+..+.++..+..++.+.|..+
T Consensus 322 ~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G-~PVI~s~~gg--~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll 398 (465)
T PLN02871 322 GDELSQAYASGDVFVMPSESETLGFVVLEAMASG-VPVVAARAGG--IPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLL 398 (465)
T ss_pred HHHHHHHHHHCCEEEECCcccccCcHHHHHHHcC-CCEEEcCCCC--cHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHH
Confidence 3578899999999999987766778899999999 8999887432 2344432 5677778888887766666554
Q ss_pred -CHHHHHHHHHHHHHHhhhceeCCC
Q 025504 204 -SEKRYRKMQMMVKKVQQHFLWHPR 227 (252)
Q Consensus 204 -~~~~~~~m~~~~~~~~~~f~~~~~ 227 (252)
+++...+|.++.++..+.|.|..-
T Consensus 399 ~~~~~~~~~~~~a~~~~~~fsw~~~ 423 (465)
T PLN02871 399 ADPELRERMGAAAREEVEKWDWRAA 423 (465)
T ss_pred hCHHHHHHHHHHHHHHHHhCCHHHH
Confidence 477788899988887778877654
No 9
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=97.33 E-value=0.0031 Score=55.83 Aligned_cols=95 Identities=13% Similarity=0.112 Sum_probs=66.9
Q ss_pred cchHHHhhccceEEEeecCCCCC-----ChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhc
Q 025504 128 KTDYIQHMKSSKYCICAKGYEVH-----SPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLS 202 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~~~~-----s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~ 202 (252)
..++.+.|..+.++++|...+.. ...++||+++|| |||.++.-..+ +.+.=....+.++..+..++.+.|..
T Consensus 285 ~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~-pvi~~~~~~~~--~~~~~~~~g~~~~~~~~~~l~~~i~~ 361 (394)
T cd03794 285 KEELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGK-PVLASVDGESA--ELVEEAGAGLVVPPGDPEALAAAILE 361 (394)
T ss_pred hHHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCC-cEEEecCCCch--hhhccCCcceEeCCCCHHHHHHHHHH
Confidence 45788999999999999776543 456899999997 88877643322 22221255667777787777777766
Q ss_pred C--CHHHHHHHHHHHHHHhh-hceeC
Q 025504 203 I--SEKRYRKMQMMVKKVQQ-HFLWH 225 (252)
Q Consensus 203 i--~~~~~~~m~~~~~~~~~-~f~~~ 225 (252)
+ .+++..+|.++..+... +|.|+
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~s~~ 387 (394)
T cd03794 362 LLDDPEERAEMGENGRRYVEEKFSRE 387 (394)
T ss_pred HHhChHHHHHHHHHHHHHHHHhhcHH
Confidence 5 67888888887776655 66654
No 10
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=97.30 E-value=0.00091 Score=58.34 Aligned_cols=96 Identities=18% Similarity=0.209 Sum_probs=69.8
Q ss_pred cchHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhcC--CH
Q 025504 128 KTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSI--SE 205 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i--~~ 205 (252)
..+..+.|+++.+++.|.........++|||++||- ||.++....+ +++++-....+.++..++.++.+.+..+ .+
T Consensus 243 ~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~P-vi~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~~ 320 (348)
T cd03820 243 TKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLP-VISFDCPTGP-SEIIEDGVNGLLVPNGDVEALAEALLRLMEDE 320 (348)
T ss_pred cchHHHHHHhCCEEEeCccccccCHHHHHHHHcCCC-EEEecCCCch-HhhhccCcceEEeCCCCHHHHHHHHHHHHcCH
Confidence 367889999999999997666667889999999995 5555532222 2333434566777887777776666665 57
Q ss_pred HHHHHHHHHHHHHhhhceeC
Q 025504 206 KRYRKMQMMVKKVQQHFLWH 225 (252)
Q Consensus 206 ~~~~~m~~~~~~~~~~f~~~ 225 (252)
+..++|.++.+...+.|.|+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~ 340 (348)
T cd03820 321 ELRKRMGANARESAERFSIE 340 (348)
T ss_pred HHHHHHHHHHHHHHHHhCHH
Confidence 88889998888888887664
No 11
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=97.21 E-value=0.0037 Score=55.17 Aligned_cols=93 Identities=17% Similarity=0.269 Sum_probs=61.9
Q ss_pred cchHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhcC--CH
Q 025504 128 KTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSI--SE 205 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i--~~ 205 (252)
..+..+.+.++.+++.|.-....+..++|||++|| |||.++.-- ..+.+.- ...+.++.+ ..++.+.+..+ .+
T Consensus 272 ~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~-PvI~~~~~~--~~~~~~~-~~~~~~~~~-~~~~~~~i~~l~~~~ 346 (375)
T cd03821 272 GEDKAAALADADLFVLPSHSENFGIVVAEALACGT-PVVTTDKVP--WQELIEY-GCGWVVDDD-VDALAAALRRALELP 346 (375)
T ss_pred hHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCC-CEEEcCCCC--HHHHhhc-CceEEeCCC-hHHHHHHHHHHHhCH
Confidence 34678889999999999876666788999999997 888876432 2333322 444444443 35444444443 24
Q ss_pred HHHHHHHHHHHHH-hhhceeC
Q 025504 206 KRYRKMQMMVKKV-QQHFLWH 225 (252)
Q Consensus 206 ~~~~~m~~~~~~~-~~~f~~~ 225 (252)
+..++|.++.++. .+.|.|+
T Consensus 347 ~~~~~~~~~~~~~~~~~~s~~ 367 (375)
T cd03821 347 QRLKAMGENGRALVEERFSWT 367 (375)
T ss_pred HHHHHHHHHHHHHHHHhcCHH
Confidence 6778888887776 6777664
No 12
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.17 E-value=0.0017 Score=52.58 Aligned_cols=86 Identities=22% Similarity=0.215 Sum_probs=56.1
Q ss_pred cchHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhcCCH--
Q 025504 128 KTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSISE-- 205 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~~-- 205 (252)
..++.+.++.|.+.++|......+..+.|||.+|| |||+++. -.+.+++.=..-.+.++..++.++.+.+..+-.
T Consensus 83 ~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~-pvI~~~~--~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 83 DDELDELYKSSDIFVSPSRNEGFGLSLLEAMACGC-PVIASDI--GGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDP 159 (172)
T ss_dssp HHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT--EEEEESS--THHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHH
T ss_pred ccccccccccceecccccccccccccccccccccc-ceeeccc--cCCceeeccccceEEeCCCCHHHHHHHHHHHHCCH
Confidence 45788999999999999998888999999999999 6666662 222233311223456666678777777766543
Q ss_pred HHHHHHHHHHH
Q 025504 206 KRYRKMQMMVK 216 (252)
Q Consensus 206 ~~~~~m~~~~~ 216 (252)
+...+|.++.+
T Consensus 160 ~~~~~l~~~~~ 170 (172)
T PF00534_consen 160 ELRQKLGKNAR 170 (172)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 44555555443
No 13
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=97.16 E-value=0.0056 Score=56.78 Aligned_cols=95 Identities=18% Similarity=0.170 Sum_probs=66.6
Q ss_pred cchHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhcC--CH
Q 025504 128 KTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSI--SE 205 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i--~~ 205 (252)
..++.+.|+.|..++.|.-....+.-++|||++|| |||.++.- +..+++.=..-.+.++..+..++.+.+..+ .+
T Consensus 291 ~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~-PVIas~~~--g~~e~i~~~~~G~lv~~~d~~~la~~i~~ll~~~ 367 (396)
T cd03818 291 YDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGC-LVVGSDTA--PVREVITDGENGLLVDFFDPDALAAAVIELLDDP 367 (396)
T ss_pred HHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCC-CEEEcCCC--CchhhcccCCceEEcCCCCHHHHHHHHHHHHhCH
Confidence 45678889999999988655545668999999999 88887743 445666545567778877777666555443 35
Q ss_pred HHHHHHHHHHHHHh-hhceeC
Q 025504 206 KRYRKMQMMVKKVQ-QHFLWH 225 (252)
Q Consensus 206 ~~~~~m~~~~~~~~-~~f~~~ 225 (252)
+...+|.++.++.. ++|.|+
T Consensus 368 ~~~~~l~~~ar~~~~~~fs~~ 388 (396)
T cd03818 368 ARRARLRRAARRTALRYDLLS 388 (396)
T ss_pred HHHHHHHHHHHHHHHHhccHH
Confidence 67788887777554 446654
No 14
>KOG2619 consensus Fucosyltransferase [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=97.11 E-value=0.0038 Score=58.07 Aligned_cols=154 Identities=12% Similarity=0.202 Sum_probs=100.5
Q ss_pred CCCcccCCccccCCccccCCC-Cccc-ccCCCCCCCCceEEEeeccCC-CCchHHHHHHhhcCCCCcEEeecCCCCCCCC
Q 025504 47 KQGFVFGKDVSLPETNVLSPQ-NPLW-AIGGKPASQRSILAFFAGSMH-GYLRPILLHHWENKDPDMKIFGQMPKAKGRG 123 (252)
Q Consensus 47 ~~~~rp~~DvviP~~~~~~p~-~~~~-~~~~~~~~~R~~L~~F~G~~~-g~~R~~L~~~~~~~~~~~~v~~~~~~~~g~~ 123 (252)
..+||-+-|+-+|+-+...+. .+.. ++......+++..+.+...+. ...|..+++.+.++ -.+.+++.|-... +
T Consensus 160 T~Tyr~dSd~~~pygy~~~~~~~~~~~p~~~~~~~k~~~~aw~vSnc~~~~~R~~~~~~L~k~-l~iD~YG~c~~~~--~ 236 (372)
T KOG2619|consen 160 TMTYRRDSDLFVPYGYLEKPEANPVLVPVNSILSAKTKLAAWLVSNCIPRSARLDYYKELMKH-LEIDSYGECLRKN--A 236 (372)
T ss_pred eEEEeccCCCCCccceEeecccCceecccccccccccceeeeeccccCcchHHHHHHHHHHhh-Cceeecccccccc--c
Confidence 346888999999996543333 2211 111112556677777887764 45777777666555 5677899885321 2
Q ss_pred cccCcchHHHhhccceEEEeecCC---CCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcC-CChhhHHHH
Q 025504 124 KRKGKTDYIQHMKSSKYCICAKGY---EVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLE-RDIPNLKNI 199 (252)
Q Consensus 124 ~~~~~~~y~~~~~~S~FCL~p~G~---~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~-~~~~~l~~~ 199 (252)
.........+.+..=||-|+-.-. ..-+.-|+.|+.+|.|||+++......| ++ .+.-|.|+. ..+.+|.+.
T Consensus 237 ~~~~~~~~~~~~s~YKFyLAfENS~c~DYVTEKfw~al~~gsVPVvlg~~n~e~f---vP-~~SfI~vdDF~s~~ela~y 312 (372)
T KOG2619|consen 237 NRDPSDCLLETLSHYKFYLAFENSNCEDYVTEKFWNALDAGSVPVVLGPPNYENF---VP-PDSFIHVDDFQSPQELAAY 312 (372)
T ss_pred cCCCCCcceeecccceEEEEecccCCcccccHHHHhhhhcCcccEEECCcccccc---CC-CcceEehhhcCCHHHHHHH
Confidence 223455667888899999997543 3457899999999999999998554333 33 444455544 346688899
Q ss_pred HhcCCHHH
Q 025504 200 LLSISEKR 207 (252)
Q Consensus 200 L~~i~~~~ 207 (252)
|+.+.+++
T Consensus 313 lk~L~~n~ 320 (372)
T KOG2619|consen 313 LKKLDKNP 320 (372)
T ss_pred HHHhhcCH
Confidence 99885433
No 15
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=97.11 E-value=0.0019 Score=57.47 Aligned_cols=94 Identities=13% Similarity=0.148 Sum_probs=69.2
Q ss_pred cchHHHhhccceEEEeecCCC--CCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhcC--
Q 025504 128 KTDYIQHMKSSKYCICAKGYE--VHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSI-- 203 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~~--~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i-- 203 (252)
..+..+.|+.|.+++.|.... ..+..+.|||++|+ |||.++.-- .+.+.+ ....+.++..+..++.+.|..+
T Consensus 258 ~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~-PvI~~~~~~--~~~i~~-~~~g~~~~~~d~~~~~~~l~~l~~ 333 (366)
T cd03822 258 DEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGK-PVISTPVGH--AEEVLD-GGTGLLVPPGDPAALAEAIRRLLA 333 (366)
T ss_pred HHHHHHHHhhcCEEEecccccccccchHHHHHHHcCC-CEEecCCCC--hheeee-CCCcEEEcCCCHHHHHHHHHHHHc
Confidence 457889999999999998776 67788999999999 999887432 333333 3345667777777666666554
Q ss_pred CHHHHHHHHHHHHHHhhhceeC
Q 025504 204 SEKRYRKMQMMVKKVQQHFLWH 225 (252)
Q Consensus 204 ~~~~~~~m~~~~~~~~~~f~~~ 225 (252)
.++...+|+++.++..+.|.|+
T Consensus 334 ~~~~~~~~~~~~~~~~~~~s~~ 355 (366)
T cd03822 334 DPELAQALRARAREYARAMSWE 355 (366)
T ss_pred ChHHHHHHHHHHHHHHhhCCHH
Confidence 3567888998888877776654
No 16
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.01 E-value=0.011 Score=53.26 Aligned_cols=95 Identities=16% Similarity=0.135 Sum_probs=65.9
Q ss_pred cchHHHhhccceEEEeecCC------CCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHh
Q 025504 128 KTDYIQHMKSSKYCICAKGY------EVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILL 201 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~------~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~ 201 (252)
..+..+.++.|...+.|.-. ......++|||++|| |||.++.-. ..+.+.=....+.++..+..++.+.|.
T Consensus 255 ~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~-PvI~s~~~~--~~e~i~~~~~g~~~~~~d~~~l~~~i~ 331 (367)
T cd05844 255 HAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGV-PVVATRHGG--IPEAVEDGETGLLVPEGDVAALAAALG 331 (367)
T ss_pred HHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCC-CEEEeCCCC--chhheecCCeeEEECCCCHHHHHHHHH
Confidence 35677889999998887431 224678999999997 999887643 234443356677888888877766665
Q ss_pred cC--CHHHHHHHHHHHHH-HhhhceeC
Q 025504 202 SI--SEKRYRKMQMMVKK-VQQHFLWH 225 (252)
Q Consensus 202 ~i--~~~~~~~m~~~~~~-~~~~f~~~ 225 (252)
.+ +++...+|.++.++ +.++|.|+
T Consensus 332 ~l~~~~~~~~~~~~~a~~~~~~~~s~~ 358 (367)
T cd05844 332 RLLADPDLRARMGAAGRRRVEERFDLR 358 (367)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHCCHH
Confidence 54 35667788777765 45677765
No 17
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.99 E-value=0.0099 Score=53.69 Aligned_cols=95 Identities=14% Similarity=0.175 Sum_probs=68.5
Q ss_pred cchHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhcC--CH
Q 025504 128 KTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSI--SE 205 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i--~~ 205 (252)
..+..+.|+.|..++.|.-......-+.|||++| +|||.++.-. ..+++.-..-...++..+..++.+.+..+ .+
T Consensus 261 ~~~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g-~PvI~s~~~~--~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~~~ 337 (371)
T cd04962 261 QDHVEELLSIADLFLLPSEKESFGLAALEAMACG-VPVVASNAGG--IPEVVKHGETGFLVDVGDVEAMAEYALSLLEDD 337 (371)
T ss_pred cccHHHHHHhcCEEEeCCCcCCCccHHHHHHHcC-CCEEEeCCCC--chhhhcCCCceEEcCCCCHHHHHHHHHHHHhCH
Confidence 3467899999999999975555567899999999 6888887543 34555444445667777777666655543 47
Q ss_pred HHHHHHHHHHHHH-hhhceeC
Q 025504 206 KRYRKMQMMVKKV-QQHFLWH 225 (252)
Q Consensus 206 ~~~~~m~~~~~~~-~~~f~~~ 225 (252)
+...+|+++.++. .++|.|+
T Consensus 338 ~~~~~~~~~~~~~~~~~fs~~ 358 (371)
T cd04962 338 ELWQEFSRAARNRAAERFDSE 358 (371)
T ss_pred HHHHHHHHHHHHHHHHhCCHH
Confidence 7888999888876 6666654
No 18
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=96.93 E-value=0.0067 Score=53.89 Aligned_cols=93 Identities=16% Similarity=0.188 Sum_probs=67.9
Q ss_pred cchHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhc-C-CH
Q 025504 128 KTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLS-I-SE 205 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~-i-~~ 205 (252)
..+..+.++.+.+++.|.-....+.-++||+++|| |||.++.- .+.+.+ .+..+.++..+..++.+.|.. + .+
T Consensus 263 ~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~-pvI~~~~~--~~~e~~--~~~~~~~~~~~~~~~~~~i~~l~~~~ 337 (365)
T cd03809 263 DEELAALYRGARAFVFPSLYEGFGLPVLEAMACGT-PVIASNIS--SLPEVA--GDAALYFDPLDPEALAAAIERLLEDP 337 (365)
T ss_pred hhHHHHHHhhhhhhcccchhccCCCCHHHHhcCCC-cEEecCCC--Ccccee--cCceeeeCCCCHHHHHHHHHHHhcCH
Confidence 46778899999999998655445677999999997 77777642 233444 345667777787777777666 3 47
Q ss_pred HHHHHHHHHHHHHhhhceeC
Q 025504 206 KRYRKMQMMVKKVQQHFLWH 225 (252)
Q Consensus 206 ~~~~~m~~~~~~~~~~f~~~ 225 (252)
+...+|.++.+++.+.|.|+
T Consensus 338 ~~~~~~~~~~~~~~~~~sw~ 357 (365)
T cd03809 338 ALREELRERGLARAKRFSWE 357 (365)
T ss_pred HHHHHHHHHHHHHHHhCCHH
Confidence 77788888888778887775
No 19
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=96.90 E-value=0.012 Score=54.47 Aligned_cols=96 Identities=11% Similarity=0.094 Sum_probs=67.2
Q ss_pred cchHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhcC--CH
Q 025504 128 KTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSI--SE 205 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i--~~ 205 (252)
..+..+.|+.+..++.|.=......-+.|||++|| |||.++.-- ..+++.=....+.++..+..++.+.+..+ .+
T Consensus 293 ~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~-Pvi~~~~~~--~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~~~ 369 (405)
T TIGR03449 293 PEELVHVYRAADVVAVPSYNESFGLVAMEAQACGT-PVVAARVGG--LPVAVADGETGLLVDGHDPADWADALARLLDDP 369 (405)
T ss_pred HHHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCC-CEEEecCCC--cHhhhccCCceEECCCCCHHHHHHHHHHHHhCH
Confidence 45677899999999988644445678999999997 888877422 22444323455667777777665555443 46
Q ss_pred HHHHHHHHHHHHHhhhceeCC
Q 025504 206 KRYRKMQMMVKKVQQHFLWHP 226 (252)
Q Consensus 206 ~~~~~m~~~~~~~~~~f~~~~ 226 (252)
+...+|.++.++..+.|.|+.
T Consensus 370 ~~~~~~~~~~~~~~~~fsw~~ 390 (405)
T TIGR03449 370 RTRIRMGAAAVEHAAGFSWAA 390 (405)
T ss_pred HHHHHHHHHHHHHHHhCCHHH
Confidence 677888888887777777763
No 20
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=96.89 E-value=0.015 Score=53.14 Aligned_cols=95 Identities=18% Similarity=0.084 Sum_probs=67.0
Q ss_pred cchHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhcC--CH
Q 025504 128 KTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSI--SE 205 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i--~~ 205 (252)
..+..+.|+.|.+++.|.-......-++|||++|+ |||.+|.-. ..+++.-......++..+..++.+.|..+ .+
T Consensus 263 ~~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~-Pvv~s~~~g--~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~~ 339 (374)
T TIGR03088 263 RDDVPALMQALDLFVLPSLAEGISNTILEAMASGL-PVIATAVGG--NPELVQHGVTGALVPPGDAVALARALQPYVSDP 339 (374)
T ss_pred cCCHHHHHHhcCEEEeccccccCchHHHHHHHcCC-CEEEcCCCC--cHHHhcCCCceEEeCCCCHHHHHHHHHHHHhCH
Confidence 45678889999999988655556788999999996 999988532 34555445567778888887766666554 35
Q ss_pred HHHHHHHHHHHHH-hhhceeC
Q 025504 206 KRYRKMQMMVKKV-QQHFLWH 225 (252)
Q Consensus 206 ~~~~~m~~~~~~~-~~~f~~~ 225 (252)
+...+|.++.++. .+.|.|+
T Consensus 340 ~~~~~~~~~a~~~~~~~fs~~ 360 (374)
T TIGR03088 340 AARRAHGAAGRARAEQQFSIN 360 (374)
T ss_pred HHHHHHHHHHHHHHHHhCCHH
Confidence 5666676666544 4666664
No 21
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=96.83 E-value=0.015 Score=54.61 Aligned_cols=95 Identities=15% Similarity=0.140 Sum_probs=67.2
Q ss_pred cchHHHhhccceEEEeecC-----C-CCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHh
Q 025504 128 KTDYIQHMKSSKYCICAKG-----Y-EVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILL 201 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G-----~-~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~ 201 (252)
..+..+.++.+..++.|.= + .....-++|||++|+ |||.++.--.| +++.=..-.+.+++.+..++.+.+.
T Consensus 289 ~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~-PVI~t~~~g~~--E~v~~~~~G~lv~~~d~~~la~ai~ 365 (406)
T PRK15427 289 SHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGI-PVVSTLHSGIP--ELVEADKSGWLVPENDAQALAQRLA 365 (406)
T ss_pred HHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCC-CEEEeCCCCch--hhhcCCCceEEeCCCCHHHHHHHHH
Confidence 4567899999999999842 1 223567999999996 99988753332 4453345567788888887777766
Q ss_pred cC---CHHHHHHHHHHHHH-HhhhceeC
Q 025504 202 SI---SEKRYRKMQMMVKK-VQQHFLWH 225 (252)
Q Consensus 202 ~i---~~~~~~~m~~~~~~-~~~~f~~~ 225 (252)
.+ ++++..+|.++.++ +.++|.|+
T Consensus 366 ~l~~~d~~~~~~~~~~ar~~v~~~f~~~ 393 (406)
T PRK15427 366 AFSQLDTDELAPVVKRAREKVETDFNQQ 393 (406)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHhcCHH
Confidence 54 56778888888774 45666654
No 22
>PRK10307 putative glycosyl transferase; Provisional
Probab=96.74 E-value=0.011 Score=55.13 Aligned_cols=95 Identities=6% Similarity=0.050 Sum_probs=67.5
Q ss_pred cchHHHhhccceEEEeecCCCC----CChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhcC
Q 025504 128 KTDYIQHMKSSKYCICAKGYEV----HSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSI 203 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~~~----~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i 203 (252)
..+..+.++.|..++.|.=... ....++|||++| +|||.++.--..+.+++. +-.+.++..+..++.+.|..+
T Consensus 294 ~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G-~PVi~s~~~g~~~~~~i~--~~G~~~~~~d~~~la~~i~~l 370 (412)
T PRK10307 294 YDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASG-RNVVATAEPGTELGQLVE--GIGVCVEPESVEALVAAIAAL 370 (412)
T ss_pred HHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcC-CCEEEEeCCCchHHHHHh--CCcEEeCCCCHHHHHHHHHHH
Confidence 4577889999999998843221 234589999999 588888743333445666 467778888888887777665
Q ss_pred --CHHHHHHHHHHHHHH-hhhceeC
Q 025504 204 --SEKRYRKMQMMVKKV-QQHFLWH 225 (252)
Q Consensus 204 --~~~~~~~m~~~~~~~-~~~f~~~ 225 (252)
+++...+|.++.++. .++|.|+
T Consensus 371 ~~~~~~~~~~~~~a~~~~~~~fs~~ 395 (412)
T PRK10307 371 ARQALLRPKLGTVAREYAERTLDKE 395 (412)
T ss_pred HhCHHHHHHHHHHHHHHHHHHcCHH
Confidence 467778898888864 5678776
No 23
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=96.72 E-value=0.023 Score=50.56 Aligned_cols=95 Identities=13% Similarity=0.081 Sum_probs=63.2
Q ss_pred cchHHHhhccceEEEeecCC------CCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHh
Q 025504 128 KTDYIQHMKSSKYCICAKGY------EVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILL 201 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~------~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~ 201 (252)
..+..+.++++.+++.|... ......++||+++||-. |.++.- .+.+++.=..-...+++.+..++.+.|.
T Consensus 246 ~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pv-i~~~~~--~~~~~i~~~~~g~~~~~~~~~~l~~~i~ 322 (355)
T cd03799 246 QEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPV-ISTDVS--GIPELVEDGETGLLVPPGDPEALADAIE 322 (355)
T ss_pred hHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCE-EecCCC--CcchhhhCCCceEEeCCCCHHHHHHHHH
Confidence 46788999999999998654 34578899999999955 455432 2334443333466677767766655555
Q ss_pred cC--CHHHHHHHHHHHHHH-hhhceeC
Q 025504 202 SI--SEKRYRKMQMMVKKV-QQHFLWH 225 (252)
Q Consensus 202 ~i--~~~~~~~m~~~~~~~-~~~f~~~ 225 (252)
.+ .+++..+|.++.++. ...|.|+
T Consensus 323 ~~~~~~~~~~~~~~~a~~~~~~~~s~~ 349 (355)
T cd03799 323 RLLDDPELRREMGEAGRARVEEEFDIR 349 (355)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHhcCHH
Confidence 43 366678888877654 4566654
No 24
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=96.68 E-value=0.038 Score=48.80 Aligned_cols=92 Identities=15% Similarity=0.181 Sum_probs=60.6
Q ss_pred cchHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhcC--CH
Q 025504 128 KTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSI--SE 205 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i--~~ 205 (252)
..+..+.+.+|.+.++|......+..++|||++|+ |||.++.- .+.+.+.=..-.+.++..+. ++.+.+..+ .+
T Consensus 269 ~~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~-PvI~~~~~--~~~~~i~~~~~g~~~~~~~~-~~~~~i~~l~~~~ 344 (374)
T cd03817 269 REELPDYYKAADLFVFASTTETQGLVLLEAMAAGL-PVVAVDAP--GLPDLVADGENGFLFPPGDE-ALAEALLRLLQDP 344 (374)
T ss_pred hHHHHHHHHHcCEEEecccccCcChHHHHHHHcCC-cEEEeCCC--ChhhheecCceeEEeCCCCH-HHHHHHHHHHhCh
Confidence 46788899999999999876666788999999987 55565532 23344433344555665553 333333332 35
Q ss_pred HHHHHHHHHHHHHhhhce
Q 025504 206 KRYRKMQMMVKKVQQHFL 223 (252)
Q Consensus 206 ~~~~~m~~~~~~~~~~f~ 223 (252)
+..++|.++.++..+.+.
T Consensus 345 ~~~~~~~~~~~~~~~~~~ 362 (374)
T cd03817 345 ELRRRLSKNAEESAEKFS 362 (374)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566788888887776643
No 25
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=96.67 E-value=0.013 Score=51.41 Aligned_cols=95 Identities=17% Similarity=0.184 Sum_probs=63.3
Q ss_pred cchHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhcC-CHH
Q 025504 128 KTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSI-SEK 206 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i-~~~ 206 (252)
..+..+.+.+|.++++|......+..++||+++|| |||.++.-. ..+.+.-....+.+...+..++.+.|..+ .+.
T Consensus 269 ~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~-pvI~~~~~~--~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~ 345 (377)
T cd03798 269 HEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGL-PVVATDVGG--IPEIITDGENGLLVPPGDPEALAEAILRLLADP 345 (377)
T ss_pred HHHHHHHHHhcCeeecchhhccCChHHHHHHhcCC-CEEEecCCC--hHHHhcCCcceeEECCCCHHHHHHHHHHHhcCc
Confidence 45678999999999999877767888999999999 677766422 23344444445677777777666555543 222
Q ss_pred HHHHHHHHHHHHhhhceeC
Q 025504 207 RYRKMQMMVKKVQQHFLWH 225 (252)
Q Consensus 207 ~~~~m~~~~~~~~~~f~~~ 225 (252)
+.+..+++...+.+.|.|+
T Consensus 346 ~~~~~~~~~~~~~~~~s~~ 364 (377)
T cd03798 346 WLRLGRAARRRVAERFSWE 364 (377)
T ss_pred HHHHhHHHHHHHHHHhhHH
Confidence 2244455555666676664
No 26
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=96.63 E-value=0.027 Score=50.24 Aligned_cols=93 Identities=18% Similarity=0.196 Sum_probs=61.3
Q ss_pred cchHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhcC---C
Q 025504 128 KTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSI---S 204 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i---~ 204 (252)
..+..+.|+.+.+.+.|........-++|||++|| |||.+|.-. ..+++. +....++..+..++.+.+..+ +
T Consensus 253 ~~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~-PvI~~~~~~--~~e~i~--~~g~~~~~~~~~~~~~~i~~ll~~~ 327 (360)
T cd04951 253 RDDIAAYYNAADLFVLSSAWEGFGLVVAEAMACEL-PVVATDAGG--VREVVG--DSGLIVPISDPEALANKIDEILKMS 327 (360)
T ss_pred cccHHHHHHhhceEEecccccCCChHHHHHHHcCC-CEEEecCCC--hhhEec--CCceEeCCCCHHHHHHHHHHHHhCC
Confidence 34667889999999998876666788999999999 888877421 223331 134456667776666555543 4
Q ss_pred HHHHHHHHHHHHHHhhhceeC
Q 025504 205 EKRYRKMQMMVKKVQQHFLWH 225 (252)
Q Consensus 205 ~~~~~~m~~~~~~~~~~f~~~ 225 (252)
++....|.++-..+.+.|.|+
T Consensus 328 ~~~~~~~~~~~~~~~~~~s~~ 348 (360)
T cd04951 328 GEERDIIGARRERIVKKFSIN 348 (360)
T ss_pred HHHHHHHHHHHHHHHHhcCHH
Confidence 555556666544456666654
No 27
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=96.62 E-value=0.01 Score=53.68 Aligned_cols=72 Identities=14% Similarity=0.074 Sum_probs=49.7
Q ss_pred cchHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhcC
Q 025504 128 KTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSI 203 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i 203 (252)
..+..+.++.+..+++|.- .....-++|||++|| |||.++.--. .+++.=.+..+.++.++..++.+.|..+
T Consensus 252 ~~~~~~~~~~ad~~v~ps~-e~~g~~~~Eama~G~-Pvi~~~~~~~--~e~i~~~~~G~~~~~~~~~~la~~i~~l 323 (351)
T cd03804 252 DEELRDLYARARAFLFPAE-EDFGIVPVEAMASGT-PVIAYGKGGA--LETVIDGVTGILFEEQTVESLAAAVERF 323 (351)
T ss_pred HHHHHHHHHhCCEEEECCc-CCCCchHHHHHHcCC-CEEEeCCCCC--cceeeCCCCEEEeCCCCHHHHHHHHHHH
Confidence 4567889999999999865 334566899999998 9988874322 2333223456777777777666555544
No 28
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=96.58 E-value=0.0092 Score=53.36 Aligned_cols=95 Identities=20% Similarity=0.116 Sum_probs=68.2
Q ss_pred cchHHHhhccceEEEeec-CCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHh-cC--
Q 025504 128 KTDYIQHMKSSKYCICAK-GYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILL-SI-- 203 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~-G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~-~i-- 203 (252)
..+..+.|+.|..++.|. -......-++|||++|| |||.++. -+..+.+.-..-.+.++..+..++.+.|. .+
T Consensus 254 ~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~-PvI~~~~--~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~~ 330 (355)
T cd03819 254 CSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGR-PVIASDH--GGARETVRPGETGLLVPPGDAEALAQALDQILSL 330 (355)
T ss_pred cccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCC-CEEEcCC--CCcHHHHhCCCceEEeCCCCHHHHHHHHHHHHhh
Confidence 557889999999999986 33345678999999999 8888773 24455565555667778888887777763 32
Q ss_pred CHHHHHHHHHHHHHHh-hhceeC
Q 025504 204 SEKRYRKMQMMVKKVQ-QHFLWH 225 (252)
Q Consensus 204 ~~~~~~~m~~~~~~~~-~~f~~~ 225 (252)
++++..+|.++.++.. .+|.|+
T Consensus 331 ~~~~~~~~~~~a~~~~~~~f~~~ 353 (355)
T cd03819 331 LPEGRAKMFAKARMCVETLFSYD 353 (355)
T ss_pred CHHHHHHHHHHHHHHHHHhhhhc
Confidence 5778888888777654 455543
No 29
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=96.55 E-value=0.023 Score=50.12 Aligned_cols=89 Identities=15% Similarity=0.092 Sum_probs=62.8
Q ss_pred cchHHHhhccceEEEeecC-CCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhcC--C
Q 025504 128 KTDYIQHMKSSKYCICAKG-YEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSI--S 204 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G-~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i--~ 204 (252)
..+..+.++.|..+++|.- .......++|||++| +|||.++.- ...+.++-....+.++..+..++.+.+..+ .
T Consensus 253 ~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G-~Pvi~~~~~--~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~ 329 (359)
T cd03823 253 QEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAG-VPVIASDIG--GMAELVRDGVNGLLFPPGDAEDLAAALERLIDD 329 (359)
T ss_pred HHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCC-CCEEECCCC--CHHHHhcCCCcEEEECCCCHHHHHHHHHHHHhC
Confidence 4678889999999999963 344567899999999 677777632 234556555567788888877666665544 4
Q ss_pred HHHHHHHHHHHHHHh
Q 025504 205 EKRYRKMQMMVKKVQ 219 (252)
Q Consensus 205 ~~~~~~m~~~~~~~~ 219 (252)
++...+|.++.++..
T Consensus 330 ~~~~~~~~~~~~~~~ 344 (359)
T cd03823 330 PDLLERLRAGIEPPR 344 (359)
T ss_pred hHHHHHHHHhHHHhh
Confidence 667777777665443
No 30
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.54 E-value=0.0082 Score=54.77 Aligned_cols=132 Identities=17% Similarity=0.288 Sum_probs=83.4
Q ss_pred ceEEEeeccCCCCchHHHHHHhhcCCCCcEEeecCCCCC---CC---CcccCcchHHHhhccceEEEeecCCC-------
Q 025504 82 SILAFFAGSMHGYLRPILLHHWENKDPDMKIFGQMPKAK---GR---GKRKGKTDYIQHMKSSKYCICAKGYE------- 148 (252)
Q Consensus 82 ~~L~~F~G~~~g~~R~~L~~~~~~~~~~~~v~~~~~~~~---g~---~~~~~~~~y~~~~~~S~FCL~p~G~~------- 148 (252)
+..+.|+|++.. . +.|.+ . ..+-.+.++|..+... .+ .+.....+..+.++. .|+|++.+++
T Consensus 169 ~~~i~yaG~l~k-~-~~l~~-~-~~~~~l~i~G~g~~~~~~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~ 243 (333)
T PRK09814 169 QKKINFAGNLEK-S-PFLKN-W-SQGIKLTVFGPNPEDLENSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGE 243 (333)
T ss_pred CceEEEecChhh-c-hHHHh-c-CCCCeEEEECCCccccccCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchh
Confidence 346889998751 1 11221 1 1112345555543221 11 111235566666766 9999988761
Q ss_pred ----CCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhcCCHHHHHHHHHHHHHHhhhce
Q 025504 149 ----VHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSISEKRYRKMQMMVKKVQQHFL 223 (252)
Q Consensus 149 ----~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~~~~~~~m~~~~~~~~~~f~ 223 (252)
..-..++++|++|+ |||.++.-.++ +++.=....+.++ ++.++.+.|+.++++++.+|+++.+++.+.+-
T Consensus 244 y~~~~~P~K~~~ymA~G~-PVI~~~~~~~~--~~V~~~~~G~~v~--~~~el~~~l~~~~~~~~~~m~~n~~~~~~~~~ 317 (333)
T PRK09814 244 YYKYNNPHKLSLYLAAGL-PVIVWSKAAIA--DFIVENGLGFVVD--SLEELPEIIDNITEEEYQEMVENVKKISKLLR 317 (333)
T ss_pred hhhccchHHHHHHHHCCC-CEEECCCccHH--HHHHhCCceEEeC--CHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh
Confidence 12345888999996 99998754333 4443355666666 67789999999999999999999999988853
No 31
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=96.51 E-value=0.05 Score=47.27 Aligned_cols=90 Identities=19% Similarity=0.193 Sum_probs=57.8
Q ss_pred chHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhH---HHHHhc-CC
Q 025504 129 TDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNL---KNILLS-IS 204 (252)
Q Consensus 129 ~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l---~~~L~~-i~ 204 (252)
.+..+.++.|.++++|.-.......++||+++|| |||.+|.- ...+++.=....+.++.++...+ .+.+.. ..
T Consensus 255 ~~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~-PvI~~~~~--~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i~~~~~ 331 (353)
T cd03811 255 SNPYPYLKAADLFVLSSRYEGFPNVLLEAMALGT-PVVATDCP--GPREILEDGENGLLVPVGDEAALAAAALALLDLLL 331 (353)
T ss_pred CCHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCC-CEEEcCCC--ChHHHhcCCCceEEECCCCHHHHHHHHHHHHhccC
Confidence 4567889999999999766556778999999999 56666543 22344543456667788777665 333333 22
Q ss_pred -HHHHHHHHH-HHHHHhhh
Q 025504 205 -EKRYRKMQM-MVKKVQQH 221 (252)
Q Consensus 205 -~~~~~~m~~-~~~~~~~~ 221 (252)
++...+|.. +...+.++
T Consensus 332 ~~~~~~~~~~~~~~~~~~~ 350 (353)
T cd03811 332 DPELRERLAAAARERVARE 350 (353)
T ss_pred ChHHHHHHHHHHHHHHHHH
Confidence 455566666 44444444
No 32
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=96.50 E-value=0.011 Score=51.64 Aligned_cols=94 Identities=16% Similarity=0.081 Sum_probs=65.5
Q ss_pred cchHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhcC--CH
Q 025504 128 KTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSI--SE 205 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i--~~ 205 (252)
..+..+.++.|.+++.|.........++||+++|| |||.++.-.. .+.+.=....+.++.++..++.+.+..+ .+
T Consensus 254 ~~~~~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~-Pvi~s~~~~~--~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~~ 330 (359)
T cd03808 254 RDDVPELLAAADVFVLPSYREGLPRVLLEAMAMGR-PVIATDVPGC--REAVIDGVNGFLVPPGDAEALADAIERLIEDP 330 (359)
T ss_pred cccHHHHHHhccEEEecCcccCcchHHHHHHHcCC-CEEEecCCCc--hhhhhcCcceEEECCCCHHHHHHHHHHHHhCH
Confidence 45678899999999999876666788999999996 7777764322 2333323456677777777666666553 46
Q ss_pred HHHHHHHHHHHHH-hhhcee
Q 025504 206 KRYRKMQMMVKKV-QQHFLW 224 (252)
Q Consensus 206 ~~~~~m~~~~~~~-~~~f~~ 224 (252)
+...+|.++.++. .++|.+
T Consensus 331 ~~~~~~~~~~~~~~~~~~s~ 350 (359)
T cd03808 331 ELRARMGQAARKRAEEEFDE 350 (359)
T ss_pred HHHHHHHHHHHHHHHHhcCH
Confidence 7777777776655 555544
No 33
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=96.49 E-value=0.0079 Score=54.70 Aligned_cols=95 Identities=16% Similarity=0.158 Sum_probs=68.2
Q ss_pred cchHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhcC--CH
Q 025504 128 KTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSI--SE 205 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i--~~ 205 (252)
..+..+.++.|..+++|.-......-++|||++|+ |||.++.- ...+.+.=.+..+.++..+..++.+.+..+ ++
T Consensus 293 ~~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~-Pvi~s~~~--~~~e~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~ 369 (398)
T cd03800 293 REDLPALYRAADVFVNPALYEPFGLTALEAMACGL-PVVATAVG--GPRDIVVDGVTGLLVDPRDPEALAAALRRLLTDP 369 (398)
T ss_pred HHHHHHHHHhCCEEEecccccccCcHHHHHHhcCC-CEEECCCC--CHHHHccCCCCeEEeCCCCHHHHHHHHHHHHhCH
Confidence 34677889999999999766666678999999995 99988742 234444334566777777777666665544 46
Q ss_pred HHHHHHHHHHHHHh-hhceeC
Q 025504 206 KRYRKMQMMVKKVQ-QHFLWH 225 (252)
Q Consensus 206 ~~~~~m~~~~~~~~-~~f~~~ 225 (252)
+...+|.++.++.. ++|.|+
T Consensus 370 ~~~~~~~~~a~~~~~~~~s~~ 390 (398)
T cd03800 370 ALRRRLSRAGLRRARARYTWE 390 (398)
T ss_pred HHHHHHHHHHHHHHHHhCCHH
Confidence 77888888877655 777665
No 34
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=96.42 E-value=0.037 Score=52.19 Aligned_cols=94 Identities=11% Similarity=0.130 Sum_probs=61.0
Q ss_pred cchHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCC---CCceEEEEcCCChhhHHHHHhc--
Q 025504 128 KTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILN---WESFAVFVLERDIPNLKNILLS-- 202 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~id---w~~fsv~i~~~~~~~l~~~L~~-- 202 (252)
..+..+.|+.|..++.|.=......-+.|||++||.||. ++. --|.++++. =.+-.+-+. +..++.+.+..
T Consensus 315 ~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa-~~~-ggp~~~iv~~~~~g~~G~l~~--d~~~la~ai~~ll 390 (419)
T cd03806 315 FEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLA-HAS-GGPLLDIVVPWDGGPTGFLAS--TAEEYAEAIEKIL 390 (419)
T ss_pred HHHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEEE-EcC-CCCchheeeccCCCCceEEeC--CHHHHHHHHHHHH
Confidence 467789999999999987666678899999999996665 442 125555553 122222232 44444333322
Q ss_pred -CCHHHHHHHHHHHHHHhhhceeC
Q 025504 203 -ISEKRYRKMQMMVKKVQQHFLWH 225 (252)
Q Consensus 203 -i~~~~~~~m~~~~~~~~~~f~~~ 225 (252)
.+++....|+++-+++.++|.++
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~fs~~ 414 (419)
T cd03806 391 SLSEEERLRIRRAARSSVKRFSDE 414 (419)
T ss_pred hCCHHHHHHHHHHHHHHHHhhCHH
Confidence 25666667888878888887664
No 35
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=96.37 E-value=0.045 Score=49.97 Aligned_cols=94 Identities=14% Similarity=0.152 Sum_probs=59.5
Q ss_pred cchHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhcC--CH
Q 025504 128 KTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSI--SE 205 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i--~~ 205 (252)
..+..+.++.|.+++.|........-++|||++|| |||.++.-- +-+-+.+. .-.+.++. +..++.+.+..+ .+
T Consensus 290 ~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~-PvI~s~~~~-~~e~i~~~-~~g~~~~~-~~~~~a~~i~~l~~~~ 365 (392)
T cd03805 290 DSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGK-PVIACNSGG-PLETVVDG-ETGFLCEP-TPEEFAEAMLKLANDP 365 (392)
T ss_pred hHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCC-CEEEECCCC-cHHHhccC-CceEEeCC-CHHHHHHHHHHHHhCh
Confidence 34556889999999998766656677899999995 777776422 11223343 33444554 555554444433 35
Q ss_pred HHHHHHHHHHHH-HhhhceeC
Q 025504 206 KRYRKMQMMVKK-VQQHFLWH 225 (252)
Q Consensus 206 ~~~~~m~~~~~~-~~~~f~~~ 225 (252)
+...+|+++.++ +.+.|.|+
T Consensus 366 ~~~~~~~~~a~~~~~~~~s~~ 386 (392)
T cd03805 366 DLADRMGAAGRKRVKEKFSTE 386 (392)
T ss_pred HHHHHHHHHHHHHHHHhcCHH
Confidence 567888887765 45667664
No 36
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=96.33 E-value=0.04 Score=48.36 Aligned_cols=93 Identities=13% Similarity=0.121 Sum_probs=62.8
Q ss_pred cchHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhcC--CH
Q 025504 128 KTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSI--SE 205 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i--~~ 205 (252)
..+..+.|+.+.+++.|......+.-+.||+++|| |||.++.-. ..+.+. +..+.++..+..++.+.+..+ .+
T Consensus 259 ~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~-PvI~~~~~~--~~e~~~--~~g~~~~~~~~~~l~~~i~~l~~~~ 333 (365)
T cd03807 259 RSDVPALLNALDVFVLSSLSEGFPNVLLEAMACGL-PVVATDVGD--NAELVG--DTGFLVPPGDPEALAEAIEALLADP 333 (365)
T ss_pred cccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCC-CEEEcCCCC--hHHHhh--cCCEEeCCCCHHHHHHHHHHHHhCh
Confidence 45678899999999999877667888999999996 788776422 122221 145666776776666555544 34
Q ss_pred HHHHHHHHHHHHH-hhhceeC
Q 025504 206 KRYRKMQMMVKKV-QQHFLWH 225 (252)
Q Consensus 206 ~~~~~m~~~~~~~-~~~f~~~ 225 (252)
+...+|.++.++. .+.|.|+
T Consensus 334 ~~~~~~~~~~~~~~~~~~s~~ 354 (365)
T cd03807 334 ALRQALGEAARERIEENFSIE 354 (365)
T ss_pred HHHHHHHHHHHHHHHHhCCHH
Confidence 6667777666644 4566664
No 37
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.26 E-value=0.064 Score=47.73 Aligned_cols=95 Identities=11% Similarity=0.090 Sum_probs=63.3
Q ss_pred cchHHHhhccceEEEeecC--CCCCChhHHHHhhcCceeEEecCCCCCCCCCCC-CCCceEEEEcCCChhhHHHHHhcC-
Q 025504 128 KTDYIQHMKSSKYCICAKG--YEVHSPRVVEAIFYECVPVIISDNFVPPFFEIL-NWESFAVFVLERDIPNLKNILLSI- 203 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G--~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~i-dw~~fsv~i~~~~~~~l~~~L~~i- 203 (252)
..+..+.++.+..+++|.- .......+.|||.+|+ |||.++.-..+ +.+ +.....+.++..+..++.+.+..+
T Consensus 254 ~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~-Pvi~~~~~~~~--~~i~~~~~~g~~~~~~d~~~~~~~i~~l~ 330 (357)
T cd03795 254 DEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGK-PVISTEIGTGG--SYVNLHGVTGLVVPPGDPAALAEAIRRLL 330 (357)
T ss_pred HHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCC-CEEecCCCCch--hHHhhCCCceEEeCCCCHHHHHHHHHHHH
Confidence 4567889999999999852 1234567999999986 77776633221 222 234566677777877666666554
Q ss_pred -CHHHHHHHHHHHHHHh-hhceeC
Q 025504 204 -SEKRYRKMQMMVKKVQ-QHFLWH 225 (252)
Q Consensus 204 -~~~~~~~m~~~~~~~~-~~f~~~ 225 (252)
.+++..+|.++.++.. +.|.|+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~s~~ 354 (357)
T cd03795 331 EDPELRERLGEAARERAEEEFTAD 354 (357)
T ss_pred HCHHHHHHHHHHHHHHHHHhcchH
Confidence 4778889998888764 555543
No 38
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=96.11 E-value=0.05 Score=51.92 Aligned_cols=93 Identities=14% Similarity=0.167 Sum_probs=60.4
Q ss_pred cchHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCC-CCC-----ceEEEEcCCChhhHHHHHh
Q 025504 128 KTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEIL-NWE-----SFAVFVLERDIPNLKNILL 201 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~i-dw~-----~fsv~i~~~~~~~l~~~L~ 201 (252)
.....+.++.|.++++|.-..+...-..|||++||.||+ ++.-- ..+.+ |.+ .-.+.+++.+..++.+.|.
T Consensus 356 ~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~-s~~gg--~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~ 432 (473)
T TIGR02095 356 EALAHLIYAGADFILMPSRFEPCGLTQLYAMRYGTVPIV-RRTGG--LADTVVDGDPEAESGTGFLFEEYDPGALLAALS 432 (473)
T ss_pred HHHHHHHHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEE-ccCCC--ccceEecCCCCCCCCceEEeCCCCHHHHHHHHH
Confidence 344567899999999998777777889999999996664 44322 22322 321 4566777777776655544
Q ss_pred cC------CHHHHHHHHHHHHHHhhhceeC
Q 025504 202 SI------SEKRYRKMQMMVKKVQQHFLWH 225 (252)
Q Consensus 202 ~i------~~~~~~~m~~~~~~~~~~f~~~ 225 (252)
.+ .++...+|.++.. .+.|.|+
T Consensus 433 ~~l~~~~~~~~~~~~~~~~~~--~~~fsw~ 460 (473)
T TIGR02095 433 RALRLYRQDPSLWEALQKNAM--SQDFSWD 460 (473)
T ss_pred HHHHHHhcCHHHHHHHHHHHh--ccCCCcH
Confidence 32 4566677766543 3566665
No 39
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=95.91 E-value=0.059 Score=49.97 Aligned_cols=95 Identities=12% Similarity=0.084 Sum_probs=61.2
Q ss_pred cchHHHhhccceEEEeecCC-CCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEE-EEcCCChhhHHHHHhc-CC
Q 025504 128 KTDYIQHMKSSKYCICAKGY-EVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAV-FVLERDIPNLKNILLS-IS 204 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~-~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv-~i~~~~~~~l~~~L~~-i~ 204 (252)
..+..+.++.|..+++|... .....-++|||++| +|||.++.-- ..+++.=..... .++..+..++.+.|.. ++
T Consensus 267 ~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G-~PVI~s~~gg--~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~ 343 (380)
T PRK15484 267 PEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAG-KPVLASTKGG--ITEFVLEGITGYHLAEPMTSDSIISDINRTLA 343 (380)
T ss_pred HHHHHHHHHhCCEEEeCCCCccccccHHHHHHHcC-CCEEEeCCCC--cHhhcccCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 34677889999999999753 44567899999999 6999887532 234432222232 4455666666555543 33
Q ss_pred HHHHHHHHHHHHH-HhhhceeC
Q 025504 205 EKRYRKMQMMVKK-VQQHFLWH 225 (252)
Q Consensus 205 ~~~~~~m~~~~~~-~~~~f~~~ 225 (252)
+.+..+|.++.++ +.++|.|+
T Consensus 344 d~~~~~~~~~ar~~~~~~fsw~ 365 (380)
T PRK15484 344 DPELTQIAEQAKDFVFSKYSWE 365 (380)
T ss_pred CHHHHHHHHHHHHHHHHhCCHH
Confidence 4445677777664 56777775
No 40
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=95.82 E-value=0.04 Score=49.23 Aligned_cols=94 Identities=11% Similarity=0.084 Sum_probs=63.7
Q ss_pred cchHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhcC--CH
Q 025504 128 KTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSI--SE 205 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i--~~ 205 (252)
..++.+.|+.|.+.+.|......+.-++|||.+|| |||.++. -+..+.+.=.+..+.++..+..++.+.|..+ .+
T Consensus 255 ~~~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~-PvI~~~~--~~~~e~~~~~~~g~~~~~~~~~~~~~~l~~l~~~~ 331 (365)
T cd03825 255 DESLALIYSAADVFVVPSLQENFPNTAIEALACGT-PVVAFDV--GGIPDIVDHGVTGYLAKPGDPEDLAEGIEWLLADP 331 (365)
T ss_pred HHHHHHHHHhCCEEEeccccccccHHHHHHHhcCC-CEEEecC--CCChhheeCCCceEEeCCCCHHHHHHHHHHHHhCH
Confidence 44677889999999999877667889999999998 5666653 2333444333456667777766655555442 35
Q ss_pred HHHHHHHHHHHHHh-hhcee
Q 025504 206 KRYRKMQMMVKKVQ-QHFLW 224 (252)
Q Consensus 206 ~~~~~m~~~~~~~~-~~f~~ 224 (252)
+...+|.++.++.. +.|.|
T Consensus 332 ~~~~~~~~~~~~~~~~~~s~ 351 (365)
T cd03825 332 DEREELGEAARELAENEFDS 351 (365)
T ss_pred HHHHHHHHHHHHHHHHhcCH
Confidence 66778887776544 44544
No 41
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=95.82 E-value=0.082 Score=46.79 Aligned_cols=71 Identities=13% Similarity=0.052 Sum_probs=46.1
Q ss_pred cchHHHhhccceEEEeecC-CCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhcC
Q 025504 128 KTDYIQHMKSSKYCICAKG-YEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSI 203 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G-~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i 203 (252)
..+..+.++.+.+++.|.- .......++|||++|+ |||.+|.--. .++++=..-.+.++. ..++.+.|+.+
T Consensus 234 ~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~-PvI~~~~~~~--~e~i~~~~~g~l~~~--~~~l~~~l~~l 305 (335)
T cd03802 234 GAEKAELLGNARALLFPILWEEPFGLVMIEAMACGT-PVIAFRRGAV--PEVVEDGVTGFLVDS--VEELAAAVARA 305 (335)
T ss_pred HHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCC-CEEEeCCCCc--hhheeCCCcEEEeCC--HHHHHHHHHHH
Confidence 3456788999999999964 2345678999999997 9999885433 244432222333333 55566555544
No 42
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=95.71 E-value=0.082 Score=49.05 Aligned_cols=95 Identities=12% Similarity=0.055 Sum_probs=57.2
Q ss_pred cchHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhcC---C
Q 025504 128 KTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSI---S 204 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i---~ 204 (252)
..+..+.++.+..++.|.-.......+.|||++|| |||.++.--. .+++.=. ..+.++. +..++.+.|..+ +
T Consensus 260 ~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~-PVI~s~~gg~--~e~i~~~-~~~~~~~-~~~~l~~~l~~~l~~~ 334 (398)
T cd03796 260 HERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGL-LVVSTRVGGI--PEVLPPD-MILLAEP-DVESIVRKLEEAISIL 334 (398)
T ss_pred HHHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCC-CEEECCCCCc--hhheeCC-ceeecCC-CHHHHHHHHHHHHhCh
Confidence 46788899999999988655445678999999999 6777764332 3444322 2333443 544444443322 2
Q ss_pred HHHHHHHHHHHHHHhhhceeCCC
Q 025504 205 EKRYRKMQMMVKKVQQHFLWHPR 227 (252)
Q Consensus 205 ~~~~~~m~~~~~~~~~~f~~~~~ 227 (252)
.++...+++...++.++|.|+.-
T Consensus 335 ~~~~~~~~~~~~~~~~~fs~~~~ 357 (398)
T cd03796 335 RTGKHDPWSFHNRVKKMYSWEDV 357 (398)
T ss_pred hhhhhHHHHHHHHHHhhCCHHHH
Confidence 22223344555667777877643
No 43
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=95.70 E-value=0.035 Score=50.67 Aligned_cols=95 Identities=18% Similarity=0.263 Sum_probs=64.1
Q ss_pred cchHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCCh------hhHHHHHh
Q 025504 128 KTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDI------PNLKNILL 201 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~------~~l~~~L~ 201 (252)
..+..+.++.|..++.|.-......-++||+++|| |||.++.-. ..+++.=....+.++..+. ..+.+.|.
T Consensus 271 ~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~-PvI~s~~~~--~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~ 347 (388)
T TIGR02149 271 KEELVELLSNAEVFVCPSIYEPLGIVNLEAMACGT-PVVASATGG--IPEVVVDGETGFLVPPDNSDADGFQAELAKAIN 347 (388)
T ss_pred HHHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCC-CEEEeCCCC--HHHHhhCCCceEEcCCCCCcccchHHHHHHHHH
Confidence 45678889999999998655555677899999999 888887432 2344432344556666555 55555554
Q ss_pred cC--CHHHHHHHHHHHHH-HhhhceeC
Q 025504 202 SI--SEKRYRKMQMMVKK-VQQHFLWH 225 (252)
Q Consensus 202 ~i--~~~~~~~m~~~~~~-~~~~f~~~ 225 (252)
.+ ++++.++|.++.++ +.+.|.|+
T Consensus 348 ~l~~~~~~~~~~~~~a~~~~~~~~s~~ 374 (388)
T TIGR02149 348 ILLADPELAKKMGIAGRKRAEEEFSWG 374 (388)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHhCCHH
Confidence 43 46777888777765 45667765
No 44
>PRK14098 glycogen synthase; Provisional
Probab=95.69 E-value=0.11 Score=50.20 Aligned_cols=95 Identities=13% Similarity=0.123 Sum_probs=60.9
Q ss_pred cchHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCC---CceEEEEcCCChhhHHHHHhcC-
Q 025504 128 KTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNW---ESFAVFVLERDIPNLKNILLSI- 203 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw---~~fsv~i~~~~~~~l~~~L~~i- 203 (252)
.....+.++.|.+++.|.=..+...-..|||++||+||+...+- ++ +.+.|+ ..-.+.+++.+...+.+.|..+
T Consensus 372 ~~~~~~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GG-l~-d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l 449 (489)
T PRK14098 372 DAFFHLAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGG-IV-ETIEEVSEDKGSGFIFHDYTPEALVAKLGEAL 449 (489)
T ss_pred HHHHHHHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCC-Cc-eeeecCCCCCCceeEeCCCCHHHHHHHHHHHH
Confidence 34456889999999999777777788999999999999865432 11 111122 2345667777777666555431
Q ss_pred ----CHHHHHHHHHHHHHHhhhceeCC
Q 025504 204 ----SEKRYRKMQMMVKKVQQHFLWHP 226 (252)
Q Consensus 204 ----~~~~~~~m~~~~~~~~~~f~~~~ 226 (252)
.++++.+|+++. +.+.|.|+.
T Consensus 450 ~~~~~~~~~~~~~~~~--~~~~fsw~~ 474 (489)
T PRK14098 450 ALYHDEERWEELVLEA--MERDFSWKN 474 (489)
T ss_pred HHHcCHHHHHHHHHHH--hcCCCChHH
Confidence 355666665543 345666653
No 45
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=95.67 E-value=0.11 Score=46.42 Aligned_cols=92 Identities=20% Similarity=0.329 Sum_probs=55.7
Q ss_pred cchHHHhhccceEEEeecCC-CCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCC-hhhHHHHHhcCCH
Q 025504 128 KTDYIQHMKSSKYCICAKGY-EVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERD-IPNLKNILLSISE 205 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~-~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~-~~~l~~~L~~i~~ 205 (252)
..+..+.+.++..++.|.-. .....-++|||++|| |||.++.- +..+++.-. ...++..+ +.+....|-. .+
T Consensus 258 ~~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~-PvI~s~~~--~~~e~~~~~--g~~~~~~~~l~~~i~~l~~-~~ 331 (363)
T cd04955 258 DQELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGC-PVLASDNP--FNREVLGDK--AIYFKVGDDLASLLEELEA-DP 331 (363)
T ss_pred hHHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCC-CEEEecCC--ccceeecCC--eeEecCchHHHHHHHHHHh-CH
Confidence 45667888888888888655 445677999999999 77777633 233444322 33344444 3332222222 24
Q ss_pred HHHHHHHHHHHHHh-hhceeC
Q 025504 206 KRYRKMQMMVKKVQ-QHFLWH 225 (252)
Q Consensus 206 ~~~~~m~~~~~~~~-~~f~~~ 225 (252)
+.+.+|.++.++.. +.|.|+
T Consensus 332 ~~~~~~~~~~~~~~~~~fs~~ 352 (363)
T cd04955 332 EEVSAMAKAARERIREKYTWE 352 (363)
T ss_pred HHHHHHHHHHHHHHHHhCCHH
Confidence 66777777766544 446664
No 46
>PRK00654 glgA glycogen synthase; Provisional
Probab=95.49 E-value=0.14 Score=48.88 Aligned_cols=91 Identities=12% Similarity=0.183 Sum_probs=59.1
Q ss_pred hHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCC-CCCC-----ceEEEEcCCChhhHHHHHhcC
Q 025504 130 DYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEI-LNWE-----SFAVFVLERDIPNLKNILLSI 203 (252)
Q Consensus 130 ~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~-idw~-----~fsv~i~~~~~~~l~~~L~~i 203 (252)
.....++.|.+++.|.=..+...-..|||++||+||+-..+ -+ .+. .|.. .-.+.++..+..++.+.|..+
T Consensus 349 ~~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~g-G~--~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~ 425 (466)
T PRK00654 349 LAHRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTG-GL--ADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRA 425 (466)
T ss_pred HHHHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCC-Cc--cceeecCCCCCCCCceEEeCCCCHHHHHHHHHHH
Confidence 34577899999999976777778899999999988874322 11 222 2331 446677888877666655442
Q ss_pred -----CHHHHHHHHHHHHHHhhhceeC
Q 025504 204 -----SEKRYRKMQMMVKKVQQHFLWH 225 (252)
Q Consensus 204 -----~~~~~~~m~~~~~~~~~~f~~~ 225 (252)
.++...+|.++.. .+.|.|+
T Consensus 426 l~~~~~~~~~~~~~~~~~--~~~fsw~ 450 (466)
T PRK00654 426 LELYRQPPLWRALQRQAM--AQDFSWD 450 (466)
T ss_pred HHHhcCHHHHHHHHHHHh--ccCCChH
Confidence 3455666666543 3556665
No 47
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=95.36 E-value=0.21 Score=46.91 Aligned_cols=86 Identities=15% Similarity=0.195 Sum_probs=54.9
Q ss_pred cchHHHhhccceEEEeec----CCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhcC
Q 025504 128 KTDYIQHMKSSKYCICAK----GYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSI 203 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~----G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i 203 (252)
..++.+.|+.|..++.|. |.+ ...-++|||++|+ |||.++.-. ..+++.=..-.+.++ +..+|.+.+..+
T Consensus 305 ~~~~~~~l~~aDv~v~~~~~~~~~~-~p~~~~Eama~G~-PVI~s~~~~--~~eiv~~~~~G~lv~--d~~~la~~i~~l 378 (415)
T cd03816 305 AEDYPKLLASADLGVSLHTSSSGLD-LPMKVVDMFGCGL-PVCALDFKC--IDELVKHGENGLVFG--DSEELAEQLIDL 378 (415)
T ss_pred HHHHHHHHHhCCEEEEccccccccC-CcHHHHHHHHcCC-CEEEeCCCC--HHHHhcCCCCEEEEC--CHHHHHHHHHHH
Confidence 467888999999988643 222 3567999999999 999987532 224442222333342 555555444433
Q ss_pred -----CHHHHHHHHHHHHHHh
Q 025504 204 -----SEKRYRKMQMMVKKVQ 219 (252)
Q Consensus 204 -----~~~~~~~m~~~~~~~~ 219 (252)
++++..+|.++.++..
T Consensus 379 l~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 379 LSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred HhcCCCHHHHHHHHHHHHHhh
Confidence 2677888888777665
No 48
>PRK14099 glycogen synthase; Provisional
Probab=95.29 E-value=0.21 Score=48.31 Aligned_cols=94 Identities=13% Similarity=0.123 Sum_probs=61.8
Q ss_pred chHHHhh-ccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCC--------ceEEEEcCCChhhHHHH
Q 025504 129 TDYIQHM-KSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWE--------SFAVFVLERDIPNLKNI 199 (252)
Q Consensus 129 ~~y~~~~-~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~--------~fsv~i~~~~~~~l~~~ 199 (252)
.+....+ +.|.+.+.|.=..+...-..|||++||+||+ ++.--+| +.+.|.. .-.+.++..+...|.+.
T Consensus 360 ~~l~~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVv-s~~GGl~-d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~a 437 (485)
T PRK14099 360 EALAHLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVV-ARVGGLA-DTVVDANEMAIATGVATGVQFSPVTADALAAA 437 (485)
T ss_pred HHHHHHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEE-eCCCCcc-ceeecccccccccCCCceEEeCCCCHHHHHHH
Confidence 3445555 4688888887777778889999999999988 4321121 1123442 34677788887776666
Q ss_pred Hhc----C-CHHHHHHHHHHHHHHhhhceeCC
Q 025504 200 LLS----I-SEKRYRKMQMMVKKVQQHFLWHP 226 (252)
Q Consensus 200 L~~----i-~~~~~~~m~~~~~~~~~~f~~~~ 226 (252)
|.. + .++...+|+++.. .+.|.|+.
T Consensus 438 i~~a~~l~~d~~~~~~l~~~~~--~~~fSw~~ 467 (485)
T PRK14099 438 LRKTAALFADPVAWRRLQRNGM--TTDVSWRN 467 (485)
T ss_pred HHHHHHHhcCHHHHHHHHHHhh--hhcCChHH
Confidence 543 2 4667778887764 35677763
No 49
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=95.18 E-value=0.069 Score=39.02 Aligned_cols=80 Identities=14% Similarity=0.191 Sum_probs=45.6
Q ss_pred EeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEc-CCChhhHHHHHhcCCHHHHHHHHHHHHHH-h
Q 025504 142 ICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVL-ERDIPNLKNILLSISEKRYRKMQMMVKKV-Q 219 (252)
Q Consensus 142 L~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~-~~~~~~l~~~L~~i~~~~~~~m~~~~~~~-~ 219 (252)
|-|.-.+..+.|++|++++|+..|.- +. ..+.+.++..+-.+.+. .+++.+..+.|.+ .+++.++|.++..+. .
T Consensus 3 Ln~~~~~~~~~r~~E~~a~G~~vi~~-~~--~~~~~~~~~~~~~~~~~~~~el~~~i~~ll~-~~~~~~~ia~~a~~~v~ 78 (92)
T PF13524_consen 3 LNPSRSDGPNMRIFEAMACGTPVISD-DS--PGLREIFEDGEHIITYNDPEELAEKIEYLLE-NPEERRRIAKNARERVL 78 (92)
T ss_pred eeCCCCCCCchHHHHHHHCCCeEEEC-Ch--HHHHHHcCCCCeEEEECCHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHH
Confidence 34432334578999999999955543 32 12223345554555554 3344433333333 678888888887654 4
Q ss_pred hhceeC
Q 025504 220 QHFLWH 225 (252)
Q Consensus 220 ~~f~~~ 225 (252)
+++.|.
T Consensus 79 ~~~t~~ 84 (92)
T PF13524_consen 79 KRHTWE 84 (92)
T ss_pred HhCCHH
Confidence 466554
No 50
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=95.14 E-value=0.068 Score=48.61 Aligned_cols=96 Identities=18% Similarity=0.168 Sum_probs=65.7
Q ss_pred cchHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhcC--CH
Q 025504 128 KTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSI--SE 205 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i--~~ 205 (252)
..+..+.++++..++.|.-......-+.|||++|| |||..+.-.-| .+.+.=.+-.+.++..+..++.+.|..+ .+
T Consensus 269 ~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~-PvI~~~~~~g~-~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~~ 346 (372)
T cd04949 269 TRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGL-PVISYDVNYGP-SEIIEDGENGYLVPKGDIEALAEAIIELLNDP 346 (372)
T ss_pred CCCHHHHHhhhhEEEecccccccChHHHHHHhCCC-CEEEecCCCCc-HHHcccCCCceEeCCCcHHHHHHHHHHHHcCH
Confidence 34567889999999998755556778999999999 77776521111 2333223455667777776666555443 46
Q ss_pred HHHHHHHHHHHHHhhhceeC
Q 025504 206 KRYRKMQMMVKKVQQHFLWH 225 (252)
Q Consensus 206 ~~~~~m~~~~~~~~~~f~~~ 225 (252)
+.+.+|+++.++..+.|.|.
T Consensus 347 ~~~~~~~~~a~~~~~~~s~~ 366 (372)
T cd04949 347 KLLQKFSEAAYENAERYSEE 366 (372)
T ss_pred HHHHHHHHHHHHHHHHhhHH
Confidence 78889999888877776654
No 51
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=95.14 E-value=0.14 Score=46.83 Aligned_cols=72 Identities=19% Similarity=0.216 Sum_probs=48.6
Q ss_pred hHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhcC
Q 025504 130 DYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSI 203 (252)
Q Consensus 130 ~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i 203 (252)
.+.+.++.+..++.|.-......-+.|||++| +|||.++..--+ .+++.=..-.+-++..+..++.+.+..+
T Consensus 250 ~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G-~Pvv~s~~~~g~-~eiv~~~~~G~lv~~~d~~~la~~i~~l 321 (359)
T PRK09922 250 VVQQKIKNVSALLLTSKFEGFPMTLLEAMSYG-IPCISSDCMSGP-RDIIKPGLNGELYTPGNIDEFVGKLNKV 321 (359)
T ss_pred HHHHHHhcCcEEEECCcccCcChHHHHHHHcC-CCEEEeCCCCCh-HHHccCCCceEEECCCCHHHHHHHHHHH
Confidence 45566778888888876655678999999999 588888722222 2444323445566778887776666654
No 52
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=94.85 E-value=0.23 Score=47.13 Aligned_cols=92 Identities=14% Similarity=0.216 Sum_probs=58.2
Q ss_pred chHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCC-CCCCCc-----eEEEEcCCChhhHHHHHhc
Q 025504 129 TDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFE-ILNWES-----FAVFVLERDIPNLKNILLS 202 (252)
Q Consensus 129 ~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~-~idw~~-----fsv~i~~~~~~~l~~~L~~ 202 (252)
....+.++.+.+.+.|.-..+...-..|||++||.||.-..+ -+ .+ +.|... -.+.++..+..++.+.+..
T Consensus 362 ~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~g-g~--~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~ 438 (476)
T cd03791 362 ALAHLIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATG-GL--ADTVIDYNEDTGEGTGFVFEGYNADALLAALRR 438 (476)
T ss_pred HHHHHHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCC-Cc--cceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHH
Confidence 344578899999999977777778899999999988754322 11 23 233321 4666777777666555544
Q ss_pred C-----CHHHHHHHHHHHHHHhhhceeC
Q 025504 203 I-----SEKRYRKMQMMVKKVQQHFLWH 225 (252)
Q Consensus 203 i-----~~~~~~~m~~~~~~~~~~f~~~ 225 (252)
+ .++...+|.++..+ ..|.|+
T Consensus 439 ~l~~~~~~~~~~~~~~~~~~--~~fsw~ 464 (476)
T cd03791 439 ALALYRDPEAWRKLQRNAMA--QDFSWD 464 (476)
T ss_pred HHHHHcCHHHHHHHHHHHhc--cCCChH
Confidence 2 24666666665432 345554
No 53
>PLN02949 transferase, transferring glycosyl groups
Probab=94.74 E-value=0.16 Score=48.84 Aligned_cols=94 Identities=15% Similarity=0.184 Sum_probs=58.9
Q ss_pred chHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCC-CCC-ceEEEEcCCChhhHHHHHhcC---
Q 025504 129 TDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEIL-NWE-SFAVFVLERDIPNLKNILLSI--- 203 (252)
Q Consensus 129 ~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~i-dw~-~fsv~i~~~~~~~l~~~L~~i--- 203 (252)
.+..+.+++|.+++.|.-......-+.|||++||+||.-..+- |-++++ +.. .-.-.+. .+..++.+.+..+
T Consensus 346 ~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gG--p~~eIV~~~~~g~tG~l~-~~~~~la~ai~~ll~~ 422 (463)
T PLN02949 346 RDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAG--PKMDIVLDEDGQQTGFLA-TTVEEYADAILEVLRM 422 (463)
T ss_pred HHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCCC--CcceeeecCCCCcccccC-CCHHHHHHHHHHHHhC
Confidence 5667789999998888766666788999999998777654321 322322 211 0111111 2555554444432
Q ss_pred CHHHHHHHHHHHHHHhhhceeC
Q 025504 204 SEKRYRKMQMMVKKVQQHFLWH 225 (252)
Q Consensus 204 ~~~~~~~m~~~~~~~~~~f~~~ 225 (252)
++++..+|+++.++..++|.++
T Consensus 423 ~~~~r~~m~~~ar~~~~~FS~e 444 (463)
T PLN02949 423 RETERLEIAAAARKRANRFSEQ 444 (463)
T ss_pred CHHHHHHHHHHHHHHHHHcCHH
Confidence 5677788998888777777665
No 54
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=94.63 E-value=0.037 Score=42.85 Aligned_cols=69 Identities=20% Similarity=0.247 Sum_probs=42.1
Q ss_pred chHHHhhccceEEEeecCC-CCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhc
Q 025504 129 TDYIQHMKSSKYCICAKGY-EVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLS 202 (252)
Q Consensus 129 ~~y~~~~~~S~FCL~p~G~-~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~ 202 (252)
.++.+.++++.++++|.-. ...+..++|++.+|| |||.++. ++.+.+.-....+.+ ..+..++.+.|..
T Consensus 62 ~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~-pvi~~~~---~~~~~~~~~~~~~~~-~~~~~~l~~~i~~ 131 (135)
T PF13692_consen 62 EELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGK-PVIASDN---GAEGIVEEDGCGVLV-ANDPEELAEAIER 131 (135)
T ss_dssp HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT---EEEEHH---HCHCHS---SEEEE--TT-HHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCC-CEEECCc---chhhheeecCCeEEE-CCCHHHHHHHHHH
Confidence 4799999999999999742 245789999999999 5555554 444444335566666 6677776666654
No 55
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=93.89 E-value=0.17 Score=47.88 Aligned_cols=94 Identities=14% Similarity=0.143 Sum_probs=60.7
Q ss_pred chHHHhhccc----eEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhcC-
Q 025504 129 TDYIQHMKSS----KYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSI- 203 (252)
Q Consensus 129 ~~y~~~~~~S----~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i- 203 (252)
.+..+.++.+ ...+.|.-......-+.|||++|| |||.++.-- ..++++=.+-.+.++..+..++.+.+..+
T Consensus 328 ~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~-PvV~s~~gg--~~eiv~~~~~G~lv~~~d~~~la~~i~~ll 404 (439)
T TIGR02472 328 DDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGL-PIVATDDGG--PRDIIANCRNGLLVDVLDLEAIASALEDAL 404 (439)
T ss_pred HHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCC-CEEEeCCCC--cHHHhcCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 3445556654 444445434445677999999999 999988532 33555434556778888887666655443
Q ss_pred -CHHHHHHHHHHHHH-HhhhceeC
Q 025504 204 -SEKRYRKMQMMVKK-VQQHFLWH 225 (252)
Q Consensus 204 -~~~~~~~m~~~~~~-~~~~f~~~ 225 (252)
+++...+|.++.++ +.++|.|+
T Consensus 405 ~~~~~~~~~~~~a~~~~~~~fsw~ 428 (439)
T TIGR02472 405 SDSSQWQLWSRNGIEGVRRHYSWD 428 (439)
T ss_pred hCHHHHHHHHHHHHHHHHHhCCHH
Confidence 45667777777654 56778776
No 56
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=93.88 E-value=0.89 Score=42.57 Aligned_cols=94 Identities=17% Similarity=0.206 Sum_probs=55.8
Q ss_pred chHHHhhccce--EEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcC-CChhhHHHHHhcC--
Q 025504 129 TDYIQHMKSSK--YCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLE-RDIPNLKNILLSI-- 203 (252)
Q Consensus 129 ~~y~~~~~~S~--FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~-~~~~~l~~~L~~i-- 203 (252)
.+..+.++.+. ..+.|.-......-+.|||++|+ |||.++.--.| ++++=..-.+.++. .+..++.+.|..+
T Consensus 300 ~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~-PVIas~vgg~~--e~i~~~~~G~l~~~~~~~~~la~~I~~ll~ 376 (407)
T cd04946 300 SEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGI-PVIATNVGGTP--EIVDNGGNGLLLSKDPTPNELVSSLSKFID 376 (407)
T ss_pred HHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCC-CEEeCCCCCcH--HHhcCCCcEEEeCCCCCHHHHHHHHHHHHh
Confidence 34556665532 23334333334678999999996 99988743332 44432333455554 3566555555443
Q ss_pred CHHHHHHHHHHHHHHh-hhceeC
Q 025504 204 SEKRYRKMQMMVKKVQ-QHFLWH 225 (252)
Q Consensus 204 ~~~~~~~m~~~~~~~~-~~f~~~ 225 (252)
++++..+|+++.++.. ++|.++
T Consensus 377 ~~~~~~~m~~~ar~~~~~~f~~~ 399 (407)
T cd04946 377 NEEEYQTMREKAREKWEENFNAS 399 (407)
T ss_pred CHHHHHHHHHHHHHHHHHHcCHH
Confidence 4788889988887665 455543
No 57
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=93.85 E-value=0.29 Score=44.74 Aligned_cols=92 Identities=17% Similarity=0.099 Sum_probs=59.6
Q ss_pred chHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCC-h-hhHHHHHhcCCHH
Q 025504 129 TDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERD-I-PNLKNILLSISEK 206 (252)
Q Consensus 129 ~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~-~-~~l~~~L~~i~~~ 206 (252)
.+..+.++.+..++.|........-+.|||++| +|||.++.-.++ +.|.-....+.++..+ + ..|.+.|. +++
T Consensus 265 ~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G-~Pvv~s~~~~~~--~~i~~~~~g~~~~~~~~~a~~i~~ll~--~~~ 339 (372)
T cd03792 265 LEVNALQRASTVVLQKSIREGFGLTVTEALWKG-KPVIAGPVGGIP--LQIEDGETGFLVDTVEEAAVRILYLLR--DPE 339 (372)
T ss_pred HHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcC-CCEEEcCCCCch--hhcccCCceEEeCCcHHHHHHHHHHHc--CHH
Confidence 456688899999998876665678999999999 599998854333 3332223333343222 1 23344443 467
Q ss_pred HHHHHHHHHHHH-hhhceeC
Q 025504 207 RYRKMQMMVKKV-QQHFLWH 225 (252)
Q Consensus 207 ~~~~m~~~~~~~-~~~f~~~ 225 (252)
...+|.++.++. .+.|.|+
T Consensus 340 ~~~~~~~~a~~~~~~~~s~~ 359 (372)
T cd03792 340 LRRKMGANAREHVRENFLIT 359 (372)
T ss_pred HHHHHHHHHHHHHHHHcCHH
Confidence 778888887774 5677765
No 58
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=93.80 E-value=0.45 Score=42.40 Aligned_cols=72 Identities=17% Similarity=0.122 Sum_probs=47.1
Q ss_pred cchHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhcC
Q 025504 128 KTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSI 203 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i 203 (252)
..+..+.++++.++++|.-......-+.|||++|| |||.++.-. ..+.+.= ........++..++.+.+..+
T Consensus 257 ~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~-PvI~s~~~~--~~~~i~~-~~~~~~~~~~~~~~a~~i~~l 328 (358)
T cd03812 257 RNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGL-PCILSDTIT--KEVDLTD-LVKFLSLDESPEIWAEEILKL 328 (358)
T ss_pred cCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCC-CEEEEcCCc--hhhhhcc-CccEEeCCCCHHHHHHHHHHH
Confidence 45678899999999999776667889999999999 555665322 2233321 334444445555555555544
No 59
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=93.78 E-value=0.29 Score=45.35 Aligned_cols=90 Identities=16% Similarity=0.225 Sum_probs=58.9
Q ss_pred hHHHhhccceEEEeec--CCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhcC--CH
Q 025504 130 DYIQHMKSSKYCICAK--GYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSI--SE 205 (252)
Q Consensus 130 ~y~~~~~~S~FCL~p~--G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i--~~ 205 (252)
+..+.++.+..+++|. |.+ ...-+.|||++|| |||.++.- .+.+..=..-.+.++ .+..++.+.+..+ .+
T Consensus 290 ~~~~~~~~adv~v~Ps~~~eG-~~~~~lEAma~G~-PVV~t~~~---~~~i~~~~~~g~lv~-~~~~~la~ai~~ll~~~ 363 (397)
T TIGR03087 290 DVRPYLAHAAVAVAPLRIARG-IQNKVLEAMAMAK-PVVASPEA---AEGIDALPGAELLVA-ADPADFAAAILALLANP 363 (397)
T ss_pred CHHHHHHhCCEEEecccccCC-cccHHHHHHHcCC-CEEecCcc---cccccccCCcceEeC-CCHHHHHHHHHHHHcCH
Confidence 5677889999999984 444 3457999999998 99988742 122211123345555 5666655555443 46
Q ss_pred HHHHHHHHHHHHH-hhhceeC
Q 025504 206 KRYRKMQMMVKKV-QQHFLWH 225 (252)
Q Consensus 206 ~~~~~m~~~~~~~-~~~f~~~ 225 (252)
+...+|.++.++. .+.|.|+
T Consensus 364 ~~~~~~~~~ar~~v~~~fsw~ 384 (397)
T TIGR03087 364 AEREELGQAARRRVLQHYHWP 384 (397)
T ss_pred HHHHHHHHHHHHHHHHhCCHH
Confidence 6678888887764 5678776
No 60
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=93.60 E-value=0.7 Score=42.96 Aligned_cols=92 Identities=15% Similarity=0.246 Sum_probs=59.3
Q ss_pred chHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCC-CCCCCc-eEEEEcCCChhhHHHHHhcC--C
Q 025504 129 TDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFE-ILNWES-FAVFVLERDIPNLKNILLSI--S 204 (252)
Q Consensus 129 ~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~-~idw~~-fsv~i~~~~~~~l~~~L~~i--~ 204 (252)
++..+.+.++++.+.-.=+........|+|++|.|||.=..+ =|--| +++|.- -.=++.+++......+|+.+ +
T Consensus 348 ~~lv~lL~~a~iGvh~MwNEHFGIsVVEyMAAGlIpi~h~Sg--GP~lDIV~~~~G~~tGFla~t~~EYaE~iLkIv~~~ 425 (465)
T KOG1387|consen 348 EKLVELLGKATIGVHTMWNEHFGISVVEYMAAGLIPIVHNSG--GPLLDIVTPWDGETTGFLAPTDEEYAEAILKIVKLN 425 (465)
T ss_pred HHHHHHhccceeehhhhhhhhcchhHHHHHhcCceEEEeCCC--CCceeeeeccCCccceeecCChHHHHHHHHHHHHcC
Confidence 456789999999999888877889999999999999975432 12222 344532 22233344444344444433 4
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 025504 205 EKRYRKMQMMVKKVQQHF 222 (252)
Q Consensus 205 ~~~~~~m~~~~~~~~~~f 222 (252)
.++...||++-+.--.+|
T Consensus 426 ~~~r~~~r~~AR~s~~RF 443 (465)
T KOG1387|consen 426 YDERNMMRRNARKSLARF 443 (465)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 566778888777665554
No 61
>PHA01633 putative glycosyl transferase group 1
Probab=93.55 E-value=0.23 Score=45.85 Aligned_cols=95 Identities=16% Similarity=0.202 Sum_probs=57.5
Q ss_pred cchHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCC--------------C----ceEEEEc
Q 025504 128 KTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNW--------------E----SFAVFVL 189 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw--------------~----~fsv~i~ 189 (252)
..+..+.++.|.+.+.|.-......-+.|||++|| |||.++-- |..++.++ . .....++
T Consensus 214 ~~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~-PVVas~~~--~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~~ 290 (335)
T PHA01633 214 REYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGT-PVIHQLMP--PLDEFTSWQWNLLIKSSKVEEYYDKEHGQKWKIH 290 (335)
T ss_pred HHHHHHHHHhCCEEEECCccccCCHHHHHHHHcCC-CEEEccCC--CceeecCCccceeeCCCCHHHhcCcccCceeeec
Confidence 35667889999999998766667788999999999 99988643 33333221 1 1122355
Q ss_pred CCChhhHHHHHhcC-CHHHHHHHHHHHHHHhhhceeC
Q 025504 190 ERDIPNLKNILLSI-SEKRYRKMQMMVKKVQQHFLWH 225 (252)
Q Consensus 190 ~~~~~~l~~~L~~i-~~~~~~~m~~~~~~~~~~f~~~ 225 (252)
..+..++.+.|... ...+-.++..+.++..+.|.|+
T Consensus 291 ~~d~~~la~ai~~~~~~~~~~~~~~~~~~~a~~f~~~ 327 (335)
T PHA01633 291 KFQIEDMANAIILAFELQDREERSMKLKELAKKYDIR 327 (335)
T ss_pred CCCHHHHHHHHHHHHhccChhhhhHHHHHHHHhcCHH
Confidence 55555555444322 1112223344556667776654
No 62
>PHA01630 putative group 1 glycosyl transferase
Probab=93.02 E-value=0.3 Score=44.78 Aligned_cols=42 Identities=12% Similarity=0.135 Sum_probs=33.3
Q ss_pred cchHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCC
Q 025504 128 KTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDN 170 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~ 170 (252)
..+..+.++.+..++.|.-......-+.|||++|| |||.++.
T Consensus 200 ~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~-PVIas~~ 241 (331)
T PHA01630 200 DDDIYSLFAGCDILFYPVRGGAFEIPVIEALALGL-DVVVTEK 241 (331)
T ss_pred HHHHHHHHHhCCEEEECCccccCChHHHHHHHcCC-CEEEeCC
Confidence 46777889999999998655555677999999998 6777663
No 63
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=92.87 E-value=1 Score=44.50 Aligned_cols=65 Identities=18% Similarity=0.087 Sum_probs=44.9
Q ss_pred chHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhH
Q 025504 129 TDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNL 196 (252)
Q Consensus 129 ~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l 196 (252)
.+..+.|+.+..++.|.=......-+.|||++|| |||.++.--.| +.|.=..-.+.++..+...+
T Consensus 464 ~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~Gl-PVVATdvGG~~--EiV~dG~nG~LVp~~D~~aL 528 (578)
T PRK15490 464 RDVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGV-PVISTPAGGSA--ECFIEGVSGFILDDAQTVNL 528 (578)
T ss_pred hhHHHHHHhCCEEEEcccccCccHHHHHHHHhCC-CEEEeCCCCcH--HHcccCCcEEEECCCChhhH
Confidence 4566778889888888655556789999999999 99988753322 44433445556677665433
No 64
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=92.63 E-value=1.6 Score=38.77 Aligned_cols=164 Identities=15% Similarity=0.129 Sum_probs=99.0
Q ss_pred CCccccCCcccc-C-CCC---cccc----c----CCCCCCCCceEEEeeccCCCC-chHHHHHHhhcCCCC--cEEeecC
Q 025504 53 GKDVSLPETNVL-S-PQN---PLWA----I----GGKPASQRSILAFFAGSMHGY-LRPILLHHWENKDPD--MKIFGQM 116 (252)
Q Consensus 53 ~~DvviP~~~~~-~-p~~---~~~~----~----~~~~~~~R~~L~~F~G~~~g~-~R~~L~~~~~~~~~~--~~v~~~~ 116 (252)
..||++|-+... + |.. +... + ...+=++|+-.++|+|+.++. .|..|++...+.+.. +.+...|
T Consensus 42 ~~DIl~P~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~pW~~K~~~a~WRG~~~~~~~R~~Lv~~~~~~p~~~da~~~~~~ 121 (256)
T smart00672 42 YLDIVFPDWSFWAGWPEVNGRPWDKDLMELEEGNKRTKWSDKNAYAYWRGNPTVASERLDLIKCNQSSPELVNARITIQD 121 (256)
T ss_pred CCceEecCHHHhCCCccccCcchHHHHHHHHhhhcCCCccccCcCccccCCCCCCcchHHHHHHhcCCcccceeEEEEec
Confidence 579999987544 1 111 1111 1 112345688899999998776 899998776554322 3333333
Q ss_pred CCCCCCCcc----c-CcchHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCC-CCCCCceEEEEcC
Q 025504 117 PKAKGRGKR----K-GKTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFE-ILNWESFAVFVLE 190 (252)
Q Consensus 117 ~~~~g~~~~----~-~~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~-~idw~~fsv~i~~ 190 (252)
.. +.|.. . ....-.+...+-||=+...|.+ .|.||.--|.+|++++.....+..=|.+ +.+|.-+.- |..
T Consensus 122 ~~--~~~~~~~~~~~~~~~~~~~~~~yKyli~~dG~~-~S~rl~~~l~~~Svvl~~~~~~~~~~~~~L~P~~HYvP-v~~ 197 (256)
T smart00672 122 WP--GKCDGEEDAPGFKKSPLEEQCKHKYKINIEGVA-WSVRLKYILACDSVVLKVKPEYYEFFSRGLQPWVHYWP-IKS 197 (256)
T ss_pred CC--CCChHHhcccCcCCCCHHHHhhcceEEecCCcc-chhhHHHHHhcCceEEEeCCchhHHHHhcccCccceEE-eeC
Confidence 21 11211 0 1112345667899999999997 5889999999999999887654332333 346665542 222
Q ss_pred --CC--hhhHHHHHhcCCHHHHHHHHHHHHHHhhh
Q 025504 191 --RD--IPNLKNILLSISEKRYRKMQMMVKKVQQH 221 (252)
Q Consensus 191 --~~--~~~l~~~L~~i~~~~~~~m~~~~~~~~~~ 221 (252)
++ +.+..+.+++ .+++.+++-++.++..+.
T Consensus 198 d~sd~~l~~~i~~~~~-~~~~a~~Ia~~~~~~~~~ 231 (256)
T smart00672 198 DLSCRELKEAVDWGNE-HDKKAQEIGKRGSEFIQQ 231 (256)
T ss_pred CCchhhHHHHHHHHHh-CHHHHHHHHHHHHHHHHH
Confidence 23 6666666665 466666776677665555
No 65
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=92.27 E-value=0.5 Score=45.24 Aligned_cols=94 Identities=15% Similarity=0.086 Sum_probs=64.0
Q ss_pred cchHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCC------CceEEEEcCCChhhHHHHHh
Q 025504 128 KTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNW------ESFAVFVLERDIPNLKNILL 201 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw------~~fsv~i~~~~~~~l~~~L~ 201 (252)
..+..+.|..+...+.|.-......-++|||++|| |||.+|.-- ..+++.= ....+.++..+..++.+.+.
T Consensus 361 ~~~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~-PVVatd~g~--~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~ 437 (475)
T cd03813 361 FQNVKEYLPKLDVLVLTSISEGQPLVILEAMAAGI-PVVATDVGS--CRELIEGADDEALGPAGEVVPPADPEALARAIL 437 (475)
T ss_pred CccHHHHHHhCCEEEeCchhhcCChHHHHHHHcCC-CEEECCCCC--hHHHhcCCcccccCCceEEECCCCHHHHHHHHH
Confidence 55677889999999988644445678999999999 888876422 2233321 24677788888876666655
Q ss_pred cC--CHHHHHHHHHHHHHH-hhhcee
Q 025504 202 SI--SEKRYRKMQMMVKKV-QQHFLW 224 (252)
Q Consensus 202 ~i--~~~~~~~m~~~~~~~-~~~f~~ 224 (252)
.+ +++...+|.++.++. .+.|.|
T Consensus 438 ~ll~~~~~~~~~~~~a~~~v~~~~s~ 463 (475)
T cd03813 438 RLLKDPELRRAMGEAGRKRVERYYTL 463 (475)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHhCCH
Confidence 54 467788888877754 444444
No 66
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=91.41 E-value=0.32 Score=44.85 Aligned_cols=68 Identities=12% Similarity=0.125 Sum_probs=43.4
Q ss_pred cchHHHhhccceEEEeecCCC-----CCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhc
Q 025504 128 KTDYIQHMKSSKYCICAKGYE-----VHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLS 202 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~~-----~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~ 202 (252)
..+..+.++.+..|++|--.. .....++|+|++|+ |||.++ +.++.....-.+.+ ..+..++.+.++.
T Consensus 264 ~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~-PVVat~-----~~~~~~~~~~~~~~-~~d~~~~~~ai~~ 336 (373)
T cd04950 264 YKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGK-PVVATP-----LPEVRRYEDEVVLI-ADDPEEFVAAIEK 336 (373)
T ss_pred HHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCC-CEEecC-----cHHHHhhcCcEEEe-CCCHHHHHHHHHH
Confidence 457788999999999995432 22357999999998 887654 23444333333333 3456655555544
No 67
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=91.09 E-value=3.1 Score=40.42 Aligned_cols=94 Identities=13% Similarity=0.089 Sum_probs=57.4
Q ss_pred chHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCC-CCCCCCCCCCCCceEEEEcC----CC----hhhHHHH
Q 025504 129 TDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDN-FVPPFFEILNWESFAVFVLE----RD----IPNLKNI 199 (252)
Q Consensus 129 ~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~-~~lPf~~~idw~~fsv~i~~----~~----~~~l~~~ 199 (252)
.+..+.+..+.-++.|.=......-+.|||++|| |||.+|- +-. .++|.=.+-.+.++. .+ +.++.+.
T Consensus 384 ~~~~~~~~~adv~v~pS~~Egfgl~~lEAma~G~-PVI~~dv~~G~--~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~ 460 (500)
T TIGR02918 384 RNLSEVYKDYELYLSASTSEGFGLTLMEAVGSGL-GMIGFDVNYGN--PTFIEDNKNGYLIPIDEEEDDEDQIITALAEK 460 (500)
T ss_pred CCHHHHHHhCCEEEEcCccccccHHHHHHHHhCC-CEEEecCCCCC--HHHccCCCCEEEEeCCccccchhHHHHHHHHH
Confidence 3556777788777777644445788999999998 7777762 222 233322333334441 22 4444433
Q ss_pred Hhc-CCHHHHHHHHHHHHHHhhhceeC
Q 025504 200 LLS-ISEKRYRKMQMMVKKVQQHFLWH 225 (252)
Q Consensus 200 L~~-i~~~~~~~m~~~~~~~~~~f~~~ 225 (252)
+.. +.++++.+|.++..+..+.|.|.
T Consensus 461 I~~ll~~~~~~~~~~~a~~~a~~fs~~ 487 (500)
T TIGR02918 461 IVEYFNSNDIDAFHEYSYQIAEGFLTA 487 (500)
T ss_pred HHHHhChHHHHHHHHHHHHHHHhcCHH
Confidence 322 24667889999888888877654
No 68
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=90.51 E-value=0.79 Score=48.29 Aligned_cols=95 Identities=16% Similarity=0.132 Sum_probs=64.8
Q ss_pred chHHHhhccc----eEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhcC-
Q 025504 129 TDYIQHMKSS----KYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSI- 203 (252)
Q Consensus 129 ~~y~~~~~~S----~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i- 203 (252)
.+..+.++.+ ..++.|.=..+...-+.|||++|+ |||.++.- ...++|.-..-.+.++..+...|.+.|..+
T Consensus 559 edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGl-PVVASdvG--G~~EII~~g~nGlLVdP~D~eaLA~AL~~LL 635 (1050)
T TIGR02468 559 SDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGL-PMVATKNG--GPVDIHRVLDNGLLVDPHDQQAIADALLKLV 635 (1050)
T ss_pred HHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCC-CEEEeCCC--CcHHHhccCCcEEEECCCCHHHHHHHHHHHh
Confidence 3445556555 244446444556788999999996 99998743 233555445567788888887776665543
Q ss_pred -CHHHHHHHHHHHHHHhhhceeCC
Q 025504 204 -SEKRYRKMQMMVKKVQQHFLWHP 226 (252)
Q Consensus 204 -~~~~~~~m~~~~~~~~~~f~~~~ 226 (252)
.++...+|.++.++..+.|.|..
T Consensus 636 ~Dpelr~~m~~~gr~~v~~FSWe~ 659 (1050)
T TIGR02468 636 ADKQLWAECRQNGLKNIHLFSWPE 659 (1050)
T ss_pred hCHHHHHHHHHHHHHHHHHCCHHH
Confidence 46778889998887777787764
No 69
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=89.90 E-value=4.2 Score=37.08 Aligned_cols=95 Identities=17% Similarity=0.169 Sum_probs=52.4
Q ss_pred CcchHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCC-CCCCCCCCCCCCceEEEEcCCChhhHHHHHhcC--
Q 025504 127 GKTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDN-FVPPFFEILNWESFAVFVLERDIPNLKNILLSI-- 203 (252)
Q Consensus 127 ~~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~-~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i-- 203 (252)
+..++...|+.+.+.+.+.|. -+.||+.+|+ |||.... -..| +.+. ....+.++ .+..+|.+.++.+
T Consensus 264 ~~~~~~~~l~~ad~vv~~Sg~-----~~~EA~a~g~-PvI~~~~~~~~~--e~~~-~g~~~lv~-~d~~~i~~ai~~ll~ 333 (365)
T TIGR00236 264 EYLDFLNLAANSHLILTDSGG-----VQEEAPSLGK-PVLVLRDTTERP--ETVE-AGTNKLVG-TDKENITKAAKRLLT 333 (365)
T ss_pred ChHHHHHHHHhCCEEEECChh-----HHHHHHHcCC-CEEECCCCCCCh--HHHh-cCceEEeC-CCHHHHHHHHHHHHh
Confidence 345678889999998876542 2799999997 7877532 2222 3333 33444454 3455555544433
Q ss_pred CHHHHHHHHHHHHHHhhhceeCCCCCCcCHHHHHHHHH
Q 025504 204 SEKRYRKMQMMVKKVQQHFLWHPRPVKYDIFHMILHSI 241 (252)
Q Consensus 204 ~~~~~~~m~~~~~~~~~~f~~~~~~~~~daf~~~~~~l 241 (252)
.++...+|.+ .. .+-+.++|...+++.|
T Consensus 334 ~~~~~~~~~~----~~------~~~g~~~a~~ri~~~l 361 (365)
T TIGR00236 334 DPDEYKKMSN----AS------NPYGDGEASERIVEEL 361 (365)
T ss_pred ChHHHHHhhh----cC------CCCcCchHHHHHHHHH
Confidence 2333333332 11 1113456666666655
No 70
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=89.25 E-value=1.3 Score=43.86 Aligned_cols=98 Identities=14% Similarity=0.270 Sum_probs=62.8
Q ss_pred cchHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCC-C-CCCC-CCCceEEEEcC-------CChhhHH
Q 025504 128 KTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPP-F-FEIL-NWESFAVFVLE-------RDIPNLK 197 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lP-f-~~~i-dw~~fsv~i~~-------~~~~~l~ 197 (252)
..+|.+.++.+.-++.|.=..++..-..||+++|+ |||.++.--++ + .+++ +-.+..+.|.. +.+.+|.
T Consensus 465 g~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~-PvI~t~~~gf~~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~La 543 (590)
T cd03793 465 GLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGI-PSITTNLSGFGCFMEEHIEDPESYGIYIVDRRFKSPDESVQQLT 543 (590)
T ss_pred CcchHHHhhhceEEEeccccCCCCcHHHHHHHcCC-CEEEccCcchhhhhHHHhccCCCceEEEecCCccchHHHHHHHH
Confidence 44689999999999999877778889999999995 99999865432 0 1232 33345666652 2234444
Q ss_pred HHHhcCC-HHHHHHHHHHHH--HHhhhceeCC
Q 025504 198 NILLSIS-EKRYRKMQMMVK--KVQQHFLWHP 226 (252)
Q Consensus 198 ~~L~~i~-~~~~~~m~~~~~--~~~~~f~~~~ 226 (252)
+.|..+. .+..+++.++.. +..+.|.|+.
T Consensus 544 ~~m~~~~~~~~r~~~~~r~~~~r~s~~f~W~~ 575 (590)
T cd03793 544 QYMYEFCQLSRRQRIIQRNRTERLSDLLDWRN 575 (590)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHhCCHHH
Confidence 4444422 223333444333 7778888864
No 71
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=88.29 E-value=1.2 Score=39.92 Aligned_cols=83 Identities=14% Similarity=0.146 Sum_probs=51.0
Q ss_pred hHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCC-----CCCCCCceEEEEcCCC--hhhHHHHHhc
Q 025504 130 DYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFF-----EILNWESFAVFVLERD--IPNLKNILLS 202 (252)
Q Consensus 130 ~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~-----~~idw~~fsv~i~~~~--~~~l~~~L~~ 202 (252)
++.+.|..+..++.+.| ..-++||+++|+ |||+.+.-..+-+ +.+.-....+.++..+ ..+|.+.|+.
T Consensus 243 ~~~~~l~~ad~~v~~~g----~~~l~Ea~~~g~-Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ 317 (348)
T TIGR01133 243 NMAAAYAAADLVISRAG----ASTVAELAAAGV-PAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLK 317 (348)
T ss_pred CHHHHHHhCCEEEECCC----hhHHHHHHHcCC-CEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHH
Confidence 78899999999998766 246899999997 7777532100000 1232345556666554 5555554443
Q ss_pred C--CHHHHHHHHHHHHH
Q 025504 203 I--SEKRYRKMQMMVKK 217 (252)
Q Consensus 203 i--~~~~~~~m~~~~~~ 217 (252)
+ +++...+|.++.++
T Consensus 318 ll~~~~~~~~~~~~~~~ 334 (348)
T TIGR01133 318 LLLDPANLEAMAEAARK 334 (348)
T ss_pred HHcCHHHHHHHHHHHHh
Confidence 2 46666777776544
No 72
>PLN02939 transferase, transferring glycosyl groups
Probab=88.21 E-value=1.9 Score=45.01 Aligned_cols=92 Identities=14% Similarity=0.194 Sum_probs=60.1
Q ss_pred HHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCC--------ceEEEEcCCChhhHHHHHhc-
Q 025504 132 IQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWE--------SFAVFVLERDIPNLKNILLS- 202 (252)
Q Consensus 132 ~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~--------~fsv~i~~~~~~~l~~~L~~- 202 (252)
...++.|.++++|.=..+...-..|||++||+||+...+- ++ +-+.|++ .-.+.++..+...+.+.|..
T Consensus 851 h~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGG-L~-DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rA 928 (977)
T PLN02939 851 HSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGG-LN-DSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERA 928 (977)
T ss_pred HHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCC-Cc-ceeecCCccccccCCCceEEecCCCHHHHHHHHHHH
Confidence 4689999999999767777888999999999999754322 11 1123332 23455666777655544432
Q ss_pred ---C--CHHHHHHHHHHHHHHhhhceeCCC
Q 025504 203 ---I--SEKRYRKMQMMVKKVQQHFLWHPR 227 (252)
Q Consensus 203 ---i--~~~~~~~m~~~~~~~~~~f~~~~~ 227 (252)
+ .++.+.+|+++. +.+.|.|...
T Consensus 929 L~~~~~dpe~~~~L~~~a--m~~dFSWe~~ 956 (977)
T PLN02939 929 FNYYKRKPEVWKQLVQKD--MNIDFSWDSS 956 (977)
T ss_pred HHHhccCHHHHHHHHHHH--HHhcCCHHHH
Confidence 2 467778887753 3466777643
No 73
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=87.64 E-value=1.9 Score=44.32 Aligned_cols=86 Identities=13% Similarity=0.147 Sum_probs=57.8
Q ss_pred eEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhcC------CHHHHHHHH
Q 025504 139 KYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSI------SEKRYRKMQ 212 (252)
Q Consensus 139 ~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i------~~~~~~~m~ 212 (252)
..+++|.=..+...-+.|||++|+ |||.++.--+ .++|.=..-.+.|+..+...+.+.|..+ .++...+|.
T Consensus 645 dVfV~PS~~EpFGLvvLEAMAcGl-PVVAT~~GG~--~EiV~dg~tGfLVdp~D~eaLA~aL~~ll~kll~dp~~~~~ms 721 (784)
T TIGR02470 645 GIFVQPALYEAFGLTVLEAMTCGL-PTFATRFGGP--LEIIQDGVSGFHIDPYHGEEAAEKIVDFFEKCDEDPSYWQKIS 721 (784)
T ss_pred cEEEECCcccCCCHHHHHHHHcCC-CEEEcCCCCH--HHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 455667666677889999999998 5555553222 2333335556778888877666555432 577888888
Q ss_pred HHHH-HHhhhceeCCC
Q 025504 213 MMVK-KVQQHFLWHPR 227 (252)
Q Consensus 213 ~~~~-~~~~~f~~~~~ 227 (252)
++.+ ++.++|.|...
T Consensus 722 ~~a~~rV~~~FSW~~~ 737 (784)
T TIGR02470 722 QGGLQRIYEKYTWKIY 737 (784)
T ss_pred HHHHHHHHHhCCHHHH
Confidence 8755 56788998753
No 74
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=86.22 E-value=3.3 Score=38.55 Aligned_cols=84 Identities=18% Similarity=0.194 Sum_probs=52.0
Q ss_pred chHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCC-----CCceEEEEcCCChhhHHHHHhcC
Q 025504 129 TDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILN-----WESFAVFVLERDIPNLKNILLSI 203 (252)
Q Consensus 129 ~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~id-----w~~fsv~i~~~~~~~l~~~L~~i 203 (252)
.+..+.|+.|.+++..+| ..-+.||+++|+ |||+.+.. |=++..+ =..+.+.+ .+..++.+.+..+
T Consensus 265 ~~~~~~~~~aDl~I~k~g----g~tl~EA~a~G~-PvI~~~~~--pgqe~~N~~~~~~~G~g~~~--~~~~~l~~~i~~l 335 (391)
T PRK13608 265 KHMNEWMASSQLMITKPG----GITISEGLARCI-PMIFLNPA--PGQELENALYFEEKGFGKIA--DTPEEAIKIVASL 335 (391)
T ss_pred chHHHHHHhhhEEEeCCc----hHHHHHHHHhCC-CEEECCCC--CCcchhHHHHHHhCCcEEEe--CCHHHHHHHHHHH
Confidence 457789999999988544 235899999997 88887632 3222211 12334333 2444444444433
Q ss_pred --CHHHHHHHHHHHHHHhhh
Q 025504 204 --SEKRYRKMQMMVKKVQQH 221 (252)
Q Consensus 204 --~~~~~~~m~~~~~~~~~~ 221 (252)
.++.+.+|+++.++..+.
T Consensus 336 l~~~~~~~~m~~~~~~~~~~ 355 (391)
T PRK13608 336 TNGNEQLTNMISTMEQDKIK 355 (391)
T ss_pred hcCHHHHHHHHHHHHHhcCC
Confidence 467888898888776554
No 75
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=85.33 E-value=7.8 Score=39.38 Aligned_cols=92 Identities=11% Similarity=0.003 Sum_probs=54.6
Q ss_pred chHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCCh------hhHHHHHhc
Q 025504 129 TDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDI------PNLKNILLS 202 (252)
Q Consensus 129 ~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~------~~l~~~L~~ 202 (252)
.+..+.|+.+...+.|.-......-++|||.+|| |||.++.--. .++|.=..-.+-++..+. ..|.++|..
T Consensus 583 ~dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~-PVVat~~gG~--~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~ 659 (694)
T PRK15179 583 RRVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGV-PVVTTLAGGA--GEAVQEGVTGLTLPADTVTAPDVAEALARIHDM 659 (694)
T ss_pred chHHHHHHhcCEEEeccccccchHHHHHHHHcCC-eEEEECCCCh--HHHccCCCCEEEeCCCCCChHHHHHHHHHHHhC
Confidence 3566778888887777544456789999999997 8888774322 244433444556665543 234444444
Q ss_pred CCHHHHHHHHHHHHH-HhhhceeC
Q 025504 203 ISEKRYRKMQMMVKK-VQQHFLWH 225 (252)
Q Consensus 203 i~~~~~~~m~~~~~~-~~~~f~~~ 225 (252)
... -.+|+++.++ +.+.|.|+
T Consensus 660 l~~--~~~l~~~ar~~a~~~FS~~ 681 (694)
T PRK15179 660 CAA--DPGIARKAADWASARFSLN 681 (694)
T ss_pred hhc--cHHHHHHHHHHHHHhCCHH
Confidence 321 1245555543 44566654
No 76
>PRK10125 putative glycosyl transferase; Provisional
Probab=85.24 E-value=3.2 Score=39.04 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=50.6
Q ss_pred cchHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHH
Q 025504 128 KTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNI 199 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~ 199 (252)
..+..+.++.+...+.|.-......-+.|||++|| |||.+|---.| ++++= .-.+.++..|...|.+.
T Consensus 297 ~~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~-PVVat~~gG~~--Eiv~~-~~G~lv~~~d~~~La~~ 364 (405)
T PRK10125 297 KRKLMSALNQMDALVFSSRVDNYPLILCEALSIGV-PVIATHSDAAR--EVLQK-SGGKTVSEEEVLQLAQL 364 (405)
T ss_pred HHHHHHHHHhCCEEEECCccccCcCHHHHHHHcCC-CEEEeCCCChH--HhEeC-CcEEEECCCCHHHHHhc
Confidence 45677888889888888766667788999999996 89888754333 45542 35778888888877764
No 77
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=84.93 E-value=4.4 Score=37.43 Aligned_cols=80 Identities=19% Similarity=0.263 Sum_probs=49.4
Q ss_pred chHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCC------CCCCceEEEEcCCChhhHHHHHhc
Q 025504 129 TDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEI------LNWESFAVFVLERDIPNLKNILLS 202 (252)
Q Consensus 129 ~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~------idw~~fsv~i~~~~~~~l~~~L~~ 202 (252)
.+..+.|+.|...+.+.|. .-+.|||++|+ |||+.+. .|-++. ++ ....+.+ .+...|.+.+..
T Consensus 274 ~~~~~l~~aaDv~V~~~g~----~ti~EAma~g~-PvI~~~~--~pgqe~gn~~~i~~-~g~g~~~--~~~~~la~~i~~ 343 (382)
T PLN02605 274 TNMEEWMGACDCIITKAGP----GTIAEALIRGL-PIILNGY--IPGQEEGNVPYVVD-NGFGAFS--ESPKEIARIVAE 343 (382)
T ss_pred ccHHHHHHhCCEEEECCCc----chHHHHHHcCC-CEEEecC--CCccchhhHHHHHh-CCceeec--CCHHHHHHHHHH
Confidence 3578999999999987763 24899999998 7777763 232221 22 3344433 454555554443
Q ss_pred C--C-HHHHHHHHHHHHHH
Q 025504 203 I--S-EKRYRKMQMMVKKV 218 (252)
Q Consensus 203 i--~-~~~~~~m~~~~~~~ 218 (252)
+ . ++..++|+++.++.
T Consensus 344 ll~~~~~~~~~m~~~~~~~ 362 (382)
T PLN02605 344 WFGDKSDELEAMSENALKL 362 (382)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 3 2 66677777665543
No 78
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=84.39 E-value=5.1 Score=37.82 Aligned_cols=139 Identities=17% Similarity=0.186 Sum_probs=79.4
Q ss_pred CCCceEEEeeccCCCC-chHHHHHHhhcCCC--CcEEeecCCCCCCCCcccCcchHHHhhccceEEEeecCCCCCChhHH
Q 025504 79 SQRSILAFFAGSMHGY-LRPILLHHWENKDP--DMKIFGQMPKAKGRGKRKGKTDYIQHMKSSKYCICAKGYEVHSPRVV 155 (252)
Q Consensus 79 ~~R~~L~~F~G~~~g~-~R~~L~~~~~~~~~--~~~v~~~~~~~~g~~~~~~~~~y~~~~~~S~FCL~p~G~~~~s~rl~ 155 (252)
.+|.-.+||+|+..+. .|..|.+.-.+... ++.+.... +..... ......-.+...+-+|=+...|.+. |.||.
T Consensus 155 ~~K~p~afWRG~~~~~~~R~~L~~~~~~~~~~~~a~i~~~d-~~~~~~-~~~~~~~l~~~~~yKYli~idG~~~-S~Rlk 231 (395)
T PF05686_consen 155 EDKKPKAFWRGSPTVAETRQRLVRCSRSHPDLWDARITKQD-WDKEYK-PGFKHVPLEDQCKYKYLIYIDGNAW-SGRLK 231 (395)
T ss_pred hhcccceEECCCcCCCcchhHHHHHhccCCccceeeechhh-hhhhcc-ccccccCHHHHhhhheeecCCCcee-ehhHH
Confidence 4577889999998654 59888765443221 22222211 000000 0112233456678899999999985 78999
Q ss_pred HHhhcCceeEEecCCCCCCCCC-CCCCCceEEEEcC-CChhhHHHHHhcC--CHHHHHHHHHHHHHHhhh
Q 025504 156 EAIFYECVPVIISDNFVPPFFE-ILNWESFAVFVLE-RDIPNLKNILLSI--SEKRYRKMQMMVKKVQQH 221 (252)
Q Consensus 156 eal~~GCIPVii~d~~~lPf~~-~idw~~fsv~i~~-~~~~~l~~~L~~i--~~~~~~~m~~~~~~~~~~ 221 (252)
--|++|++.+.....+.-=|.+ +.+|.-+.- |.. ++..+|.+.++=. .+++.+++-++..+..+.
T Consensus 232 ylL~c~SvVl~~~~~~~e~f~~~L~P~vHYVP-V~~~~d~sdL~~~v~w~~~~~~~A~~IA~~g~~f~~~ 300 (395)
T PF05686_consen 232 YLLACNSVVLKVKSPYYEFFYRALKPWVHYVP-VKRDDDLSDLEEKVEWLNAHDDEAQRIAENGQRFARE 300 (395)
T ss_pred HHHcCCceEEEeCCcHHHHHHhhhcccccEEE-eccccchhhHHHHhhhcccChHHHHHHHHHHHHHHHH
Confidence 9999999999886554332332 456766643 333 3444444444322 345555555555554433
No 79
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=82.06 E-value=9.3 Score=30.93 Aligned_cols=42 Identities=19% Similarity=0.120 Sum_probs=32.3
Q ss_pred cchHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCC
Q 025504 128 KTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDN 170 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~ 170 (252)
...+...++.|..+++|......+..++|||.+|| |||.++.
T Consensus 172 ~~~~~~~~~~~di~l~~~~~e~~~~~~~Eam~~g~-pvi~s~~ 213 (229)
T cd01635 172 EELLALLLAAADVFVLPSLREGFGLVVLEAMACGL-PVIATDV 213 (229)
T ss_pred HHHHHHHhhcCCEEEecccccCcChHHHHHHhCCC-CEEEcCC
Confidence 34455566669999999988788899999999987 5555553
No 80
>PLN00142 sucrose synthase
Probab=81.62 E-value=5 Score=41.44 Aligned_cols=92 Identities=14% Similarity=0.126 Sum_probs=58.7
Q ss_pred HHhhcc-ceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhc------CC
Q 025504 132 IQHMKS-SKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLS------IS 204 (252)
Q Consensus 132 ~~~~~~-S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~------i~ 204 (252)
...+++ +...+.|.=..+...-+.|||++|+ |||.++.--++ ++|.=..-.+.|+..+..++.+.|.. -.
T Consensus 660 yr~iadaaDVfVlPS~~EgFGLvvLEAMA~Gl-PVVATdvGG~~--EIV~dG~tG~LV~P~D~eaLA~aI~~lLekLl~D 736 (815)
T PLN00142 660 YRYIADTKGAFVQPALYEAFGLTVVEAMTCGL-PTFATCQGGPA--EIIVDGVSGFHIDPYHGDEAANKIADFFEKCKED 736 (815)
T ss_pred HHHHHhhCCEEEeCCcccCCCHHHHHHHHcCC-CEEEcCCCCHH--HHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCC
Confidence 334443 3444566555556788999999997 78777643222 34433555677888777665544432 15
Q ss_pred HHHHHHHHHHH-HHHhhhceeCC
Q 025504 205 EKRYRKMQMMV-KKVQQHFLWHP 226 (252)
Q Consensus 205 ~~~~~~m~~~~-~~~~~~f~~~~ 226 (252)
++...+|.++. +++.++|.|+.
T Consensus 737 p~lr~~mg~~Ar~rv~e~FSWe~ 759 (815)
T PLN00142 737 PSYWNKISDAGLQRIYECYTWKI 759 (815)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHH
Confidence 77788888875 45668888875
No 81
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=81.42 E-value=2.4 Score=40.66 Aligned_cols=90 Identities=10% Similarity=0.029 Sum_probs=61.0
Q ss_pred cchHHHhhccceEEEeecCCCCCChhHHHHhhcCce---eEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhc--
Q 025504 128 KTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECV---PVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLS-- 202 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCI---PVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~-- 202 (252)
..+..+.++.+.-++.|.-......-..|||++||= |||+++..-.+-. ..-.+.|+..+..++.+.|..
T Consensus 351 ~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~-----~~~g~lv~p~d~~~la~ai~~~l 425 (460)
T cd03788 351 REELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE-----LSGALLVNPYDIDEVADAIHRAL 425 (460)
T ss_pred HHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEEeccccchhh-----cCCCEEECCCCHHHHHHHHHHHH
Confidence 457778899999998886555556778899999995 5898874322111 233677888888776665543
Q ss_pred -CCHHHHHHHHHHHHHHhhhc
Q 025504 203 -ISEKRYRKMQMMVKKVQQHF 222 (252)
Q Consensus 203 -i~~~~~~~m~~~~~~~~~~f 222 (252)
.++++..+|.++.++....|
T Consensus 426 ~~~~~e~~~~~~~~~~~v~~~ 446 (460)
T cd03788 426 TMPLEERRERHRKLREYVRTH 446 (460)
T ss_pred cCCHHHHHHHHHHHHHHHHhC
Confidence 35677777766666665544
No 82
>PLN02316 synthase/transferase
Probab=79.15 E-value=6.6 Score=41.61 Aligned_cols=92 Identities=10% Similarity=0.141 Sum_probs=57.5
Q ss_pred HhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCC------------ceEEEEcCCChhhHHHH-
Q 025504 133 QHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWE------------SFAVFVLERDIPNLKNI- 199 (252)
Q Consensus 133 ~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~------------~fsv~i~~~~~~~l~~~- 199 (252)
..++.|.+.|+|.=..+...-..|||++||+||+-..+ -+| +-+.|++ .-.+.++..+...|...
T Consensus 915 ~iyaaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vG-GL~-DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL 992 (1036)
T PLN02316 915 LIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTG-GLF-DTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYAL 992 (1036)
T ss_pred HHHHhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCC-CcH-hhccccccccccccccccCCceEEeCCCCHHHHHHHH
Confidence 68999999999987777888999999999999995432 111 1233442 24566777776654443
Q ss_pred ---HhcCCHHHHHHHHHHHHH-HhhhceeCCC
Q 025504 200 ---LLSISEKRYRKMQMMVKK-VQQHFLWHPR 227 (252)
Q Consensus 200 ---L~~i~~~~~~~m~~~~~~-~~~~f~~~~~ 227 (252)
|... .+.-..|++..++ +.+.|.|+..
T Consensus 993 ~raL~~~-~~~~~~~~~~~r~~m~~dFSW~~~ 1023 (1036)
T PLN02316 993 NRAISAW-YDGRDWFNSLCKRVMEQDWSWNRP 1023 (1036)
T ss_pred HHHHhhh-hhhHHHHHHHHHHHHHhhCCHHHH
Confidence 3332 1222334444443 3566888754
No 83
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=77.59 E-value=9.3 Score=34.16 Aligned_cols=84 Identities=17% Similarity=0.205 Sum_probs=52.3
Q ss_pred chHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCC-------CCCCCCCCCCCceEEEEcCC--ChhhHHHH
Q 025504 129 TDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNF-------VPPFFEILNWESFAVFVLER--DIPNLKNI 199 (252)
Q Consensus 129 ~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~-------~lPf~~~idw~~fsv~i~~~--~~~~l~~~ 199 (252)
.++.+.|..+.+.+.+.|. .-+.|||.+|+ |||+.+.- ..+.+.+.+ ....+.++.. +..+|.+.
T Consensus 244 ~~~~~~l~~ad~~v~~sg~----~t~~Eam~~G~-Pvv~~~~~~~~~~~~~~~~~~l~~-~g~g~~v~~~~~~~~~l~~~ 317 (350)
T cd03785 244 DDMAAAYAAADLVISRAGA----STVAELAALGL-PAILIPLPYAADDHQTANARALVK-AGAAVLIPQEELTPERLAAA 317 (350)
T ss_pred hhHHHHHHhcCEEEECCCH----hHHHHHHHhCC-CEEEeecCCCCCCcHHHhHHHHHh-CCCEEEEecCCCCHHHHHHH
Confidence 5778899999999987662 35899999998 56554321 011122223 4556666655 56666655
Q ss_pred HhcC--CHHHHHHHHHHHHHH
Q 025504 200 LLSI--SEKRYRKMQMMVKKV 218 (252)
Q Consensus 200 L~~i--~~~~~~~m~~~~~~~ 218 (252)
|+.+ +++...+|+++.++.
T Consensus 318 i~~ll~~~~~~~~~~~~~~~~ 338 (350)
T cd03785 318 LLELLSDPERLKAMAEAARSL 338 (350)
T ss_pred HHHHhcCHHHHHHHHHHHHhc
Confidence 5543 466677777765543
No 84
>PLN02275 transferase, transferring glycosyl groups
Probab=77.58 E-value=12 Score=34.40 Aligned_cols=77 Identities=13% Similarity=0.109 Sum_probs=49.9
Q ss_pred ceEEEeeccCCCCchHHHHHHhhcCC-CCcEEeecCCCCCCCCcccCcchHHHhhccceEEEeecCCC---CCChhHHHH
Q 025504 82 SILAFFAGSMHGYLRPILLHHWENKD-PDMKIFGQMPKAKGRGKRKGKTDYIQHMKSSKYCICAKGYE---VHSPRVVEA 157 (252)
Q Consensus 82 ~~L~~F~G~~~g~~R~~L~~~~~~~~-~~~~v~~~~~~~~g~~~~~~~~~y~~~~~~S~FCL~p~G~~---~~s~rl~ea 157 (252)
++-+.+.|. |..|+.|.+..+... .++.+++.. ....++.+.|+.+..++.|.... ....-++||
T Consensus 261 ~i~l~ivG~--G~~~~~l~~~~~~~~l~~v~~~~~~---------~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEA 329 (371)
T PLN02275 261 RLLFIITGK--GPQKAMYEEKISRLNLRHVAFRTMW---------LEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDM 329 (371)
T ss_pred CeEEEEEeC--CCCHHHHHHHHHHcCCCceEEEcCC---------CCHHHHHHHHHhCCEEEEeccccccccccHHHHHH
Confidence 466778884 677777666554321 234444321 12567889999999998763211 134679999
Q ss_pred hhcCceeEEecCC
Q 025504 158 IFYECVPVIISDN 170 (252)
Q Consensus 158 l~~GCIPVii~d~ 170 (252)
|++|+ |||.++.
T Consensus 330 mA~G~-PVVa~~~ 341 (371)
T PLN02275 330 FGCGL-PVCAVSY 341 (371)
T ss_pred HHCCC-CEEEecC
Confidence 99998 8888763
No 85
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=77.23 E-value=6.4 Score=33.32 Aligned_cols=42 Identities=21% Similarity=0.148 Sum_probs=30.6
Q ss_pred chHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCC
Q 025504 129 TDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNF 171 (252)
Q Consensus 129 ~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~ 171 (252)
.+..+.++.+...+.|.-......-+.||+++| +|||.++.-
T Consensus 268 ~~~~~~~~~~~~~v~ps~~e~~~~~~~Ea~a~g-~pvi~~~~~ 309 (381)
T COG0438 268 EELAELLASADVFVLPSLSEGFGLVLLEAMAAG-TPVIASDVG 309 (381)
T ss_pred HHHHHHHHhCCEEEeccccccchHHHHHHHhcC-CcEEECCCC
Confidence 456667887999999854322334499999999 999887643
No 86
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=77.12 E-value=5.1 Score=36.27 Aligned_cols=84 Identities=15% Similarity=0.248 Sum_probs=51.1
Q ss_pred chHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCC-----CCC-CCCCCceEEEEcCCC--hhhHHHHH
Q 025504 129 TDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPP-----FFE-ILNWESFAVFVLERD--IPNLKNIL 200 (252)
Q Consensus 129 ~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lP-----f~~-~idw~~fsv~i~~~~--~~~l~~~L 200 (252)
.++.+.|..+..+++..| ..-++|||++|+--|++....... ..+ +.+ ....+.++.++ ...|.+.+
T Consensus 244 ~~~~~~~~~~d~~i~~~g----~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~-~~~g~~~~~~~~~~~~l~~~i 318 (357)
T PRK00726 244 DDMAAAYAAADLVICRAG----ASTVAELAAAGLPAILVPLPHAADDHQTANARALVD-AGAALLIPQSDLTPEKLAEKL 318 (357)
T ss_pred hhHHHHHHhCCEEEECCC----HHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHH-CCCEEEEEcccCCHHHHHHHH
Confidence 467899999999998766 245999999998444443211111 012 233 34567777766 45555555
Q ss_pred hcC--CHHHHHHHHHHHHH
Q 025504 201 LSI--SEKRYRKMQMMVKK 217 (252)
Q Consensus 201 ~~i--~~~~~~~m~~~~~~ 217 (252)
+.+ .++...+|+++.++
T Consensus 319 ~~ll~~~~~~~~~~~~~~~ 337 (357)
T PRK00726 319 LELLSDPERLEAMAEAARA 337 (357)
T ss_pred HHHHcCHHHHHHHHHHHHh
Confidence 543 35666677776443
No 87
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=76.63 E-value=4 Score=38.15 Aligned_cols=88 Identities=11% Similarity=0.085 Sum_probs=51.7
Q ss_pred hHHHhhccceEEEeecCC-CCCChhHHHHhhcCceeEEecCCCCCCCCCCCC---CCceEEEEcCCChhhHHHHHhcC--
Q 025504 130 DYIQHMKSSKYCICAKGY-EVHSPRVVEAIFYECVPVIISDNFVPPFFEILN---WESFAVFVLERDIPNLKNILLSI-- 203 (252)
Q Consensus 130 ~y~~~~~~S~FCL~p~G~-~~~s~rl~eal~~GCIPVii~d~~~lPf~~~id---w~~fsv~i~~~~~~~l~~~L~~i-- 203 (252)
+..+.++.|..++++... .....-+.||+++|| |||.++... -|.++.+ -..+.+ +..+..+|.+.|..+
T Consensus 312 el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~-PVI~g~~~~-~~~e~~~~~~~~g~~~--~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 312 ELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGV-PVISGPHTF-NFKEIFERLLQAGAAI--QVEDAEDLAKAVTYLLT 387 (425)
T ss_pred HHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCC-CEEECCCcc-CHHHHHHHHHHCCCeE--EECCHHHHHHHHHHHhc
Confidence 567888999987775332 113445899999997 888876422 1222211 123333 344555555554432
Q ss_pred CHHHHHHHHHHHHHHhhh
Q 025504 204 SEKRYRKMQMMVKKVQQH 221 (252)
Q Consensus 204 ~~~~~~~m~~~~~~~~~~ 221 (252)
+++...+|.++.++....
T Consensus 388 ~~~~~~~m~~~a~~~~~~ 405 (425)
T PRK05749 388 DPDARQAYGEAGVAFLKQ 405 (425)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 466777788777666544
No 88
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=75.75 E-value=10 Score=36.35 Aligned_cols=86 Identities=12% Similarity=0.097 Sum_probs=57.5
Q ss_pred cchHHHhhccceEEEeecCCCCCChhHHHHhhcCcee----EEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhc-
Q 025504 128 KTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVP----VIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLS- 202 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIP----Vii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~- 202 (252)
..+....++.+.-|++|.=......-..|||++|+ | ||+++..-.+ +.+. -++.|+..+...+.+.|..
T Consensus 346 ~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~-P~~g~vVlS~~~G~~--~~l~---~gllVnP~d~~~lA~aI~~a 419 (456)
T TIGR02400 346 REELMALYRAADVGLVTPLRDGMNLVAKEYVAAQD-PKDGVLILSEFAGAA--QELN---GALLVNPYDIDGMADAIARA 419 (456)
T ss_pred HHHHHHHHHhCcEEEECccccccCccHHHHHHhcC-CCCceEEEeCCCCCh--HHhC---CcEEECCCCHHHHHHHHHHH
Confidence 46778889999999997654445677999999997 8 8888743221 1222 3677888888776665533
Q ss_pred --CCHHHHHHHHHHHHHHh
Q 025504 203 --ISEKRYRKMQMMVKKVQ 219 (252)
Q Consensus 203 --i~~~~~~~m~~~~~~~~ 219 (252)
.++++..++.+++++..
T Consensus 420 L~~~~~er~~r~~~~~~~v 438 (456)
T TIGR02400 420 LTMPLEEREERHRAMMDKL 438 (456)
T ss_pred HcCCHHHHHHHHHHHHHHH
Confidence 35555555555454443
No 89
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=72.84 E-value=15 Score=33.57 Aligned_cols=83 Identities=16% Similarity=0.151 Sum_probs=46.5
Q ss_pred hHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCC-CCCC--CCCCCCceEEEEcCCChhhHHHHHhcC--C
Q 025504 130 DYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFV-PPFF--EILNWESFAVFVLERDIPNLKNILLSI--S 204 (252)
Q Consensus 130 ~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~-lPf~--~~idw~~fsv~i~~~~~~~l~~~L~~i--~ 204 (252)
+..+.|+.|...+...| ..-+.||+++|+ |||+.+... ..-+ ..+.-..+.+.+ .+..+|.+.+..+ .
T Consensus 266 ~~~~l~~~aD~~v~~~g----g~t~~EA~a~g~-PvI~~~~~~g~~~~n~~~~~~~G~~~~~--~~~~~l~~~i~~ll~~ 338 (380)
T PRK13609 266 NIDELFRVTSCMITKPG----GITLSEAAALGV-PVILYKPVPGQEKENAMYFERKGAAVVI--RDDEEVFAKTEALLQD 338 (380)
T ss_pred hHHHHHHhccEEEeCCC----chHHHHHHHhCC-CEEECCCCCCcchHHHHHHHhCCcEEEE--CCHHHHHHHHHHHHCC
Confidence 46788899986654333 345899999998 687755321 0000 011112334432 4445555444443 4
Q ss_pred HHHHHHHHHHHHHHh
Q 025504 205 EKRYRKMQMMVKKVQ 219 (252)
Q Consensus 205 ~~~~~~m~~~~~~~~ 219 (252)
++...+|.++.+++.
T Consensus 339 ~~~~~~m~~~~~~~~ 353 (380)
T PRK13609 339 DMKLLQMKEAMKSLY 353 (380)
T ss_pred HHHHHHHHHHHHHhC
Confidence 677788887766543
No 90
>PLN02846 digalactosyldiacylglycerol synthase
Probab=67.72 E-value=45 Score=32.24 Aligned_cols=37 Identities=14% Similarity=0.116 Sum_probs=26.9
Q ss_pred HhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCC
Q 025504 133 QHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDN 170 (252)
Q Consensus 133 ~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~ 170 (252)
+.+..+...+.|.-......-+.|||++|+ |||..|.
T Consensus 296 ~~~~~~DvFv~pS~~Et~g~v~lEAmA~G~-PVVa~~~ 332 (462)
T PLN02846 296 PLFHDYKVFLNPSTTDVVCTTTAEALAMGK-IVVCANH 332 (462)
T ss_pred HHHHhCCEEEECCCcccchHHHHHHHHcCC-cEEEecC
Confidence 566666666666544445678999999997 8888764
No 91
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=60.68 E-value=14 Score=33.64 Aligned_cols=86 Identities=15% Similarity=0.228 Sum_probs=48.8
Q ss_pred hHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCC----CCCCCce------------E--EEEcCC
Q 025504 130 DYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFE----ILNWESF------------A--VFVLER 191 (252)
Q Consensus 130 ~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~----~idw~~f------------s--v~i~~~ 191 (252)
+..+.++.|...+++.|. -..||+.+|| |||+.... -||.. .+....+ . +..++.
T Consensus 254 ~~~~~~~~aDl~v~~sG~-----~~lEa~a~G~-PvI~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 326 (380)
T PRK00025 254 QKREAMAAADAALAASGT-----VTLELALLKV-PMVVGYKV-SPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEA 326 (380)
T ss_pred cHHHHHHhCCEEEECccH-----HHHHHHHhCC-CEEEEEcc-CHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCC
Confidence 567888999999997653 3449999998 77776433 12220 0101111 1 111223
Q ss_pred ChhhHHHHHhcC--CHHHHHHHHHHHHHHhhhc
Q 025504 192 DIPNLKNILLSI--SEKRYRKMQMMVKKVQQHF 222 (252)
Q Consensus 192 ~~~~l~~~L~~i--~~~~~~~m~~~~~~~~~~f 222 (252)
+..+|.+.+..+ .++..++|.++...+.+..
T Consensus 327 ~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 359 (380)
T PRK00025 327 TPEKLARALLPLLADGARRQALLEGFTELHQQL 359 (380)
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh
Confidence 333444444333 4677778888877776654
No 92
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=59.03 E-value=35 Score=30.22 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=28.0
Q ss_pred cchHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEe
Q 025504 128 KTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVII 167 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii 167 (252)
..+..+.|..|...++..|. -++|++.+| +|+|+
T Consensus 232 ~~~m~~lm~~aDl~Is~~G~-----T~~E~~a~g-~P~i~ 265 (279)
T TIGR03590 232 VENMAELMNEADLAIGAAGS-----TSWERCCLG-LPSLA 265 (279)
T ss_pred HHHHHHHHHHCCEEEECCch-----HHHHHHHcC-CCEEE
Confidence 45678999999999998772 289999999 67775
No 93
>PLN02501 digalactosyldiacylglycerol synthase
Probab=56.97 E-value=39 Score=34.71 Aligned_cols=37 Identities=19% Similarity=0.140 Sum_probs=26.5
Q ss_pred HhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCC
Q 025504 133 QHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDN 170 (252)
Q Consensus 133 ~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~ 170 (252)
+.++.+...+.|--......-+.|||++|| |||..|.
T Consensus 614 ~lyasaDVFVlPS~sEgFGlVlLEAMA~Gl-PVVATd~ 650 (794)
T PLN02501 614 DSLHGYKVFINPSISDVLCTATAEALAMGK-FVVCADH 650 (794)
T ss_pred HHHHhCCEEEECCCcccchHHHHHHHHcCC-CEEEecC
Confidence 466666665556444445678999999998 8888774
No 94
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=55.81 E-value=41 Score=34.83 Aligned_cols=88 Identities=8% Similarity=-0.003 Sum_probs=56.9
Q ss_pred chHHHhhccceEEEeecCCCCCChhHHHHhhcCcee----EEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHh---
Q 025504 129 TDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVP----VIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILL--- 201 (252)
Q Consensus 129 ~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIP----Vii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~--- 201 (252)
.++...++.+.-|++|.=......-..|||++|+ | +|+++---.+ +.+ ..-++.|++.+..++.+.+.
T Consensus 367 ~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~-p~~gvlVlSe~~G~~--~~l--~~~allVnP~D~~~lA~AI~~aL 441 (797)
T PLN03063 367 NYLCALYAITDVMLVTSLRDGMNLVSYEFVACQK-AKKGVLVLSEFAGAG--QSL--GAGALLVNPWNITEVSSAIKEAL 441 (797)
T ss_pred HHHHHHHHhCCEEEeCccccccCcchhhHheeec-CCCCCEEeeCCcCch--hhh--cCCeEEECCCCHHHHHHHHHHHH
Confidence 5677899999999998744444567899999998 6 7777632111 112 34578898888876665442
Q ss_pred cCCHHHHHHHHHHHHHHhhh
Q 025504 202 SISEKRYRKMQMMVKKVQQH 221 (252)
Q Consensus 202 ~i~~~~~~~m~~~~~~~~~~ 221 (252)
.+++++.+++.+++.+....
T Consensus 442 ~m~~~er~~r~~~~~~~v~~ 461 (797)
T PLN03063 442 NMSDEERETRHRHNFQYVKT 461 (797)
T ss_pred hCCHHHHHHHHHHHHHhhhh
Confidence 24555555555545444443
No 95
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=52.08 E-value=33 Score=27.21 Aligned_cols=74 Identities=23% Similarity=0.139 Sum_probs=43.2
Q ss_pred chHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCC--CceEEEEcCCChhhHHHHHhc
Q 025504 129 TDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNW--ESFAVFVLERDIPNLKNILLS 202 (252)
Q Consensus 129 ~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw--~~fsv~i~~~~~~~l~~~L~~ 202 (252)
.+|...-.+-|..||.+|.-........|...|..-|||.++..-+.....+. .--++.|..++-.+|.+.|++
T Consensus 39 ~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP~v~Is~~dG~~L~~~l~~ 114 (143)
T cd02133 39 EDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFISKEDGEALKAALES 114 (143)
T ss_pred hccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEeEEEecHHHHHHHHHHHhC
Confidence 34544444688999988875445667789999999999965443222111111 112344555555555555543
No 96
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=48.25 E-value=44 Score=29.47 Aligned_cols=80 Identities=21% Similarity=0.404 Sum_probs=49.5
Q ss_pred CCCceEEEeeccCCCCchHHHHHHhhcCC-CCcEEeecCCC--CCCCCccc--CcchHHHhhccceEEEeecCCCCCChh
Q 025504 79 SQRSILAFFAGSMHGYLRPILLHHWENKD-PDMKIFGQMPK--AKGRGKRK--GKTDYIQHMKSSKYCICAKGYEVHSPR 153 (252)
Q Consensus 79 ~~R~~L~~F~G~~~g~~R~~L~~~~~~~~-~~~~v~~~~~~--~~g~~~~~--~~~~y~~~~~~S~FCL~p~G~~~~s~r 153 (252)
..+.+|++|-|.-.+ .+.+.++..+ ..+.+++.-.. ..++-... ...++.+.|..|+.++.-.|.+.
T Consensus 191 ~~~~iLv~~gg~~~~----~~~~~l~~~~~~~~~v~g~~~~~~~~~ni~~~~~~~~~~~~~m~~ad~vIs~~G~~t---- 262 (318)
T PF13528_consen 191 DEPKILVYFGGGGPG----DLIEALKALPDYQFIVFGPNAADPRPGNIHVRPFSTPDFAELMAAADLVISKGGYTT---- 262 (318)
T ss_pred CCCEEEEEeCCCcHH----HHHHHHHhCCCCeEEEEcCCcccccCCCEEEeecChHHHHHHHHhCCEEEECCCHHH----
Confidence 456688888775333 4455554432 35556643210 11111111 23678999999999999999873
Q ss_pred HHHHhhcCceeEEe
Q 025504 154 VVEAIFYECVPVII 167 (252)
Q Consensus 154 l~eal~~GCIPVii 167 (252)
+.||+.+|+ |+++
T Consensus 263 ~~Ea~~~g~-P~l~ 275 (318)
T PF13528_consen 263 ISEALALGK-PALV 275 (318)
T ss_pred HHHHHHcCC-CEEE
Confidence 889999986 6665
No 97
>KOG3185 consensus Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]
Probab=47.01 E-value=17 Score=31.01 Aligned_cols=32 Identities=22% Similarity=0.431 Sum_probs=27.5
Q ss_pred cceEEEeecCCCCCChhHHHHhhcCceeEEec
Q 025504 137 SSKYCICAKGYEVHSPRVVEAIFYECVPVIIS 168 (252)
Q Consensus 137 ~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~ 168 (252)
.-+|||+..|.+..-...|||=..+.|||+-.
T Consensus 20 TNtYclva~ggS~nfys~~e~el~d~IPiV~t 51 (245)
T KOG3185|consen 20 TNTYCLVAIGGSENFYSAFEAELGDVIPIVHT 51 (245)
T ss_pred ccceEEEEecCchhHHHHHHHHhcCccceEEe
Confidence 46799999998877788999999999999843
No 98
>PF07038 DUF1324: Protein of unknown function (DUF1324); InterPro: IPR009757 This family consists of several Circovirus proteins of around 60 residues in length. The function of this family is unknown.
Probab=41.56 E-value=23 Score=23.18 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=28.4
Q ss_pred hccceEEEeecCC-CCCChhHHHHhhcCceeEEecCCCCCCCCC
Q 025504 135 MKSSKYCICAKGY-EVHSPRVVEAIFYECVPVIISDNFVPPFFE 177 (252)
Q Consensus 135 ~~~S~FCL~p~G~-~~~s~rl~eal~~GCIPVii~d~~~lPf~~ 177 (252)
.-+|.||+.|--. +..|+|-|-.-..||--.-+ -.||.++
T Consensus 6 vfqsrfcifpltfkssasprkfltnvtgccsatv---trlplsn 46 (59)
T PF07038_consen 6 VFQSRFCIFPLTFKSSASPRKFLTNVTGCCSATV---TRLPLSN 46 (59)
T ss_pred EEeeeeEEEEeeeccCCChHHHhhcccceeeeeE---Eeccchh
Confidence 3479999999765 44678988888899965544 2466554
No 99
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=36.88 E-value=86 Score=29.32 Aligned_cols=82 Identities=15% Similarity=0.198 Sum_probs=50.2
Q ss_pred CcchHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhcCCHH
Q 025504 127 GKTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSISEK 206 (252)
Q Consensus 127 ~~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~~~ 206 (252)
..++|.+.+++........-..-.---+.-.|.+| +||+++..- ||...+-=..+.|.... ..++.+
T Consensus 255 pf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G-~~v~L~~~n--p~~~~l~~~~ipVlf~~----------d~L~~~ 321 (360)
T PF07429_consen 255 PFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLG-KKVFLSRDN--PFWQDLKEQGIPVLFYG----------DELDEA 321 (360)
T ss_pred CHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcC-CeEEEecCC--hHHHHHHhCCCeEEecc----------ccCCHH
Confidence 45788888888888877654332233466677777 599998754 23211111122233332 345788
Q ss_pred HHHHHHHHHHHHhhh
Q 025504 207 RYRKMQMMVKKVQQH 221 (252)
Q Consensus 207 ~~~~m~~~~~~~~~~ 221 (252)
.+.++||++..+-+.
T Consensus 322 ~v~ea~rql~~~dk~ 336 (360)
T PF07429_consen 322 LVREAQRQLANVDKQ 336 (360)
T ss_pred HHHHHHHHHhhCccc
Confidence 889999999987544
No 100
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=36.72 E-value=62 Score=32.91 Aligned_cols=92 Identities=12% Similarity=0.122 Sum_probs=53.5
Q ss_pred CcchHHHhhccceEEEeecCCCCCChhHHHHhhcCc---eeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhc-
Q 025504 127 GKTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYEC---VPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLS- 202 (252)
Q Consensus 127 ~~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GC---IPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~- 202 (252)
...++...++.+.-|++|.=......-..|||++|+ =++|++...--. .++.. ++.|++.+..++.+.+..
T Consensus 351 ~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~-~~l~~----~llv~P~d~~~la~ai~~~ 425 (726)
T PRK14501 351 PFEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAA-AELAE----ALLVNPNDIEGIAAAIKRA 425 (726)
T ss_pred CHHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEecccchh-HHhCc----CeEECCCCHHHHHHHHHHH
Confidence 356778899999999997644444567889999987 124555421100 01121 577888888776665533
Q ss_pred --CCHH-HHHHHHHHHHHHhhhcee
Q 025504 203 --ISEK-RYRKMQMMVKKVQQHFLW 224 (252)
Q Consensus 203 --i~~~-~~~~m~~~~~~~~~~f~~ 224 (252)
++++ +..+++ ++++....+.|
T Consensus 426 l~~~~~e~~~r~~-~~~~~v~~~~~ 449 (726)
T PRK14501 426 LEMPEEEQRERMQ-AMQERLRRYDV 449 (726)
T ss_pred HcCCHHHHHHHHH-HHHHHHHhCCH
Confidence 2443 333443 34433444443
No 101
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=35.68 E-value=75 Score=29.03 Aligned_cols=76 Identities=16% Similarity=0.138 Sum_probs=43.4
Q ss_pred CcchHHHhhccceEEEeec------CCCCCChhHHHHhhcCceeEEecC---C--CCCCCCCCCCCCceEEEEcCCChhh
Q 025504 127 GKTDYIQHMKSSKYCICAK------GYEVHSPRVVEAIFYECVPVIISD---N--FVPPFFEILNWESFAVFVLERDIPN 195 (252)
Q Consensus 127 ~~~~y~~~~~~S~FCL~p~------G~~~~s~rl~eal~~GCIPVii~d---~--~~lPf~~~idw~~fsv~i~~~~~~~ 195 (252)
-..+-.+.|+.|-|..... ++...-..-.|.+++|.|||+=-. . +.+-=...+|-..-+|..+|.++..
T Consensus 263 i~~E~~~~Maks~Fgy~~~k~~~~y~~r~mEYt~iE~~A~GtIPVF~k~~GEN~r~~~D~~~~~~~~~~~I~~De~dle~ 342 (355)
T PF11440_consen 263 IRSEGLERMAKSLFGYQLSKLQQKYLQRSMEYTQIELIAVGTIPVFDKSWGENNRFTLDGTRYIDHPYSAIYFDENDLES 342 (355)
T ss_dssp -HHHHHHHHHTEEEEEE-----GGG-SS---HHHHHHHHCTSEEEEEHHHHHHSB-TTTSSBGGSS--S-EEE-TTSHHH
T ss_pred hhHHHHHHHhhccceeecHHHHHHHHHhhhhhheeeeeeeceeeeeeccccccceeeecCceeeccCcceeEeccchHHH
Confidence 4567789999999997753 333233446799999999998432 1 1221112345555578999999876
Q ss_pred HHHHHhc
Q 025504 196 LKNILLS 202 (252)
Q Consensus 196 l~~~L~~ 202 (252)
-.+.|..
T Consensus 343 T~ekl~E 349 (355)
T PF11440_consen 343 TVEKLIE 349 (355)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
No 102
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=35.30 E-value=1e+02 Score=28.62 Aligned_cols=84 Identities=18% Similarity=0.268 Sum_probs=56.5
Q ss_pred cchHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCC---CC------CCCCceEEEEcCCCh--hhH
Q 025504 128 KTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFF---EI------LNWESFAVFVLERDI--PNL 196 (252)
Q Consensus 128 ~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~---~~------idw~~fsv~i~~~~~--~~l 196 (252)
..++.+.|+.|.-++|=.|.+ -+.|++..| +|+|+ +.+|+. +. +-=...+..+.++++ .+|
T Consensus 243 ~~dm~~~~~~ADLvIsRaGa~----Ti~E~~a~g-~P~Il---iP~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l 314 (357)
T COG0707 243 IDDMAALLAAADLVISRAGAL----TIAELLALG-VPAIL---VPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKL 314 (357)
T ss_pred HhhHHHHHHhccEEEeCCccc----HHHHHHHhC-CCEEE---eCCCCCccchHHHHHHHHHhCCCEEEeccccCCHHHH
Confidence 346778899999999988865 377877776 68887 334433 00 111456788888884 456
Q ss_pred HHHHhcC--CHHHHHHHHHHHHHHh
Q 025504 197 KNILLSI--SEKRYRKMQMMVKKVQ 219 (252)
Q Consensus 197 ~~~L~~i--~~~~~~~m~~~~~~~~ 219 (252)
.+.|..+ +++++.+|.++.+.+.
T Consensus 315 ~~~i~~l~~~~~~l~~m~~~a~~~~ 339 (357)
T COG0707 315 AELILRLLSNPEKLKAMAENAKKLG 339 (357)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 6666554 2689999988776654
No 103
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=34.33 E-value=56 Score=19.08 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=18.8
Q ss_pred CChhhHHHHHhc--CCHHHHHHHHHHHH
Q 025504 191 RDIPNLKNILLS--ISEKRYRKMQMMVK 216 (252)
Q Consensus 191 ~~~~~l~~~L~~--i~~~~~~~m~~~~~ 216 (252)
+++..|.+.+.+ |+++++.++++++.
T Consensus 3 ~~L~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 3 DRLEKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 445566666654 89999999988764
No 104
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=31.81 E-value=1.3e+02 Score=22.48 Aligned_cols=69 Identities=20% Similarity=0.028 Sum_probs=41.3
Q ss_pred hhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCC--CCCCCC-----CCCCceEEEEcCCChhhHHHHHhc
Q 025504 134 HMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFV--PPFFEI-----LNWESFAVFVLERDIPNLKNILLS 202 (252)
Q Consensus 134 ~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~--lPf~~~-----idw~~fsv~i~~~~~~~l~~~L~~ 202 (252)
.-.+-|..||-+|..........|..+|..-|||.++-. .|.... -+..--++.|..++-..|.+.+++
T Consensus 43 ~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~g~~l~~~~~~ 118 (126)
T cd00538 43 ADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYADGEALLSLLEA 118 (126)
T ss_pred CCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHHHHHHHHHHhc
Confidence 334678889988875444667889999999999965432 222111 111223455555555556665543
No 105
>PF09671 Spore_GerQ: Spore coat protein (Spore_GerQ); InterPro: IPR014099 Members of this protein family are the spore coat protein GerQ of endospore-forming Firmicutes (low GC Gram-positive bacteria). This protein is cross-linked by a spore coat-associated transglutaminase.
Probab=31.41 E-value=27 Score=25.29 Aligned_cols=10 Identities=30% Similarity=0.843 Sum_probs=8.5
Q ss_pred CCCCcEEEEe
Q 025504 12 TEGADHFLVA 21 (252)
Q Consensus 12 ~~G~DH~~v~ 21 (252)
.-||||++++
T Consensus 45 ~aGRDhiiis 54 (81)
T PF09671_consen 45 AAGRDHIIIS 54 (81)
T ss_pred hcCcceEEEe
Confidence 3599999987
No 106
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=30.37 E-value=25 Score=32.20 Aligned_cols=71 Identities=11% Similarity=0.129 Sum_probs=59.5
Q ss_pred cCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhcCCHHHHHHHHHHH
Q 025504 145 KGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSISEKRYRKMQMMV 215 (252)
Q Consensus 145 ~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~~~~~~~m~~~~ 215 (252)
.|-+...+.+.+.+.---|+|=+|.--.--|.++++++++-|..+-+....|.+.=++++++++.++.+..
T Consensus 145 ~GLs~~Gk~lV~~~N~LgIiiDlSH~s~kt~~Dvl~~s~~PviaSHSN~~al~~h~RNl~D~qlkaI~~~g 215 (313)
T COG2355 145 GGLTPFGKELVREMNELGIIIDLSHLSDKTFWDVLDLSKAPVVASHSNARALVDHPRNLSDEQLKAIAETG 215 (313)
T ss_pred CCCCHHHHHHHHHHHhcCCEEEecccCCccHHHHHhccCCceEEecCCchhccCCCCCCCHHHHHHHHhcC
Confidence 45667789999999999999999888888899999999999999888777777777888888777777643
No 107
>TIGR02728 spore_gerQ spore coat protein GerQ. Members of this protein family are the spore coat protein GerQ of endospore-forming Firmicutes (low GC Gram-positive bacteria). This protein is cross-linked by a spore coat-associated transglutaminase.
Probab=29.78 E-value=29 Score=25.16 Aligned_cols=10 Identities=30% Similarity=0.683 Sum_probs=8.4
Q ss_pred CCCcEEEEec
Q 025504 13 EGADHFLVAC 22 (252)
Q Consensus 13 ~G~DH~~v~~ 22 (252)
-||||++++-
T Consensus 44 AGRDhiiisd 53 (82)
T TIGR02728 44 AGRDHIVISD 53 (82)
T ss_pred cCcceEEEcC
Confidence 5999999873
No 108
>PF15582 Imm40: Immunity protein 40
Probab=29.24 E-value=73 Score=28.63 Aligned_cols=63 Identities=17% Similarity=0.123 Sum_probs=36.9
Q ss_pred chHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHH-hcCCHHH
Q 025504 129 TDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNIL-LSISEKR 207 (252)
Q Consensus 129 ~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L-~~i~~~~ 207 (252)
....+++++||||+|---...+.. ..||+|+ +.-.|.|....+ ..+-.++ ++|-+++
T Consensus 260 ~~~Y~LF~DSTF~F~NiNG~~~~~-------------------~Im~~D~-~~Ysf~vs~~~s--~~v~~Iyn~GIYDK~ 317 (327)
T PF15582_consen 260 MKMYDLFCDSTFCFCNINGTHTRF-------------------SIMHSDI-DNYSFDVSDNSS--KIVRWIYNRGIYDKE 317 (327)
T ss_pred HHHHHHhhhceEEEEEecCceeee-------------------eeeeccc-cceeeEEEecCh--HHHHHHHhcccccch
Confidence 456799999999999765554433 3477765 333444444442 3344444 3455555
Q ss_pred HHHHHH
Q 025504 208 YRKMQM 213 (252)
Q Consensus 208 ~~~m~~ 213 (252)
-.+|++
T Consensus 318 ~~~~~~ 323 (327)
T PF15582_consen 318 DRIRRF 323 (327)
T ss_pred hhhhhh
Confidence 555554
No 109
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=29.17 E-value=1.3e+02 Score=27.37 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=29.2
Q ss_pred CcchHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEec
Q 025504 127 GKTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIIS 168 (252)
Q Consensus 127 ~~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~ 168 (252)
+..-|.+.|+.+...++- +|+. .-++||+.+| -||.+-
T Consensus 218 ~~nPy~~~La~ad~i~VT-~DSv--SMvsEA~~tG-~pV~v~ 255 (311)
T PF06258_consen 218 GENPYLGFLAAADAIVVT-EDSV--SMVSEAAATG-KPVYVL 255 (311)
T ss_pred CCCcHHHHHHhCCEEEEc-CccH--HHHHHHHHcC-CCEEEe
Confidence 344689999988877765 6753 5899999999 588763
No 110
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=28.71 E-value=1.4e+02 Score=22.73 Aligned_cols=36 Identities=14% Similarity=0.079 Sum_probs=30.0
Q ss_pred ccceEEEeecCCCCCChhHHHHhhcCceeEEecCCC
Q 025504 136 KSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNF 171 (252)
Q Consensus 136 ~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~ 171 (252)
.+-+.+|+-+|.-........|..+|..-|||-++-
T Consensus 43 ~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~ 78 (122)
T cd02130 43 VAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNV 78 (122)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECC
Confidence 377899999988766677888999999999997644
No 111
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=27.74 E-value=1.7e+02 Score=22.11 Aligned_cols=66 Identities=21% Similarity=0.172 Sum_probs=40.7
Q ss_pred ccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCC--CCCCCCCCCC---ceEEEEcCCChhhHHHHHh
Q 025504 136 KSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFV--PPFFEILNWE---SFAVFVLERDIPNLKNILL 201 (252)
Q Consensus 136 ~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~--lPf~~~idw~---~fsv~i~~~~~~~l~~~L~ 201 (252)
.+.|.+||-+|.-........|..+|..-|||-+... .+|...-+-. --++.|..++-.+|.+.++
T Consensus 39 v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l~~~l~ 109 (118)
T cd04818 39 FAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDALKAALA 109 (118)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHHHHHHh
Confidence 4688999988875444567789999999999954332 2332111111 1245565555566666665
No 112
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=27.11 E-value=84 Score=28.62 Aligned_cols=62 Identities=11% Similarity=0.113 Sum_probs=37.1
Q ss_pred HHhhcCceeEEecCCC-----CCCCCCCCCCCceEEEEcCCChhhHHHHHhcCCHHHHHHHHHHHHHHhhhc
Q 025504 156 EAIFYECVPVIISDNF-----VPPFFEILNWESFAVFVLERDIPNLKNILLSISEKRYRKMQMMVKKVQQHF 222 (252)
Q Consensus 156 eal~~GCIPVii~d~~-----~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~~~~~~~m~~~~~~~~~~f 222 (252)
.|+.+|..|+.=-+.- .-||. +| . ..+.|-+|........+.+.+++++++|+.+.+-++++
T Consensus 229 lAvetg~~plye~~~g~~~~~~~~~~--ld-~--~~~~pv~~~l~~q~Rf~~L~~~~~~~~q~~v~~~~~~~ 295 (299)
T PRK11865 229 LAVETGYWPLFEIENGKFKITYEPLH--LD-R--RTRKPIEEYLKVQGRFKHLTEEDIEILQKYIDEKWKEL 295 (299)
T ss_pred HHHhcCceeEEEEECCeeccCCCccc--cc-c--cCCCCHHHHHhhCcchhcCCHHHHHHHHHHHHHHHHHH
Confidence 4778899999754321 12333 33 1 22233333333444456678999999999888877664
No 113
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=25.99 E-value=79 Score=30.85 Aligned_cols=103 Identities=17% Similarity=0.156 Sum_probs=57.9
Q ss_pred CcchHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCC----CCCCCCCCC-CCCceEEEEcCCChhhHHHHHh
Q 025504 127 GKTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDN----FVPPFFEIL-NWESFAVFVLERDIPNLKNILL 201 (252)
Q Consensus 127 ~~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~----~~lPf~~~i-dw~~fsv~i~~~~~~~l~~~L~ 201 (252)
...-+.+..+.|.+=|+|-=..|-.---+.||+.|||||+-..+ -+.++.+.+ .=..-.+.+.+.+...+...|+
T Consensus 358 ~~~la~~i~agaD~~lmPSrfEPcGL~ql~amryGtvpIv~~tGGLadTV~~~~~~~~~~~gtGf~f~~~~~~~l~~al~ 437 (487)
T COG0297 358 DEPLAHLIYAGADVILMPSRFEPCGLTQLYAMRYGTLPIVRETGGLADTVVDRNEWLIQGVGTGFLFLQTNPDHLANALR 437 (487)
T ss_pred cHHHHHHHHhcCCEEEeCCcCcCCcHHHHHHHHcCCcceEcccCCccceecCccchhccCceeEEEEecCCHHHHHHHHH
Confidence 34556788889999999865555556677999999999987642 233332210 0012234444445554443332
Q ss_pred ----c--CCHHHHHHHHHHHHHHhhhceeCCCCCCc
Q 025504 202 ----S--ISEKRYRKMQMMVKKVQQHFLWHPRPVKY 231 (252)
Q Consensus 202 ----~--i~~~~~~~m~~~~~~~~~~f~~~~~~~~~ 231 (252)
. .++...+.+|++... ..|.|+.+...+
T Consensus 438 rA~~~y~~~~~~w~~~~~~~m~--~d~sw~~sa~~y 471 (487)
T COG0297 438 RALVLYRAPPLLWRKVQPNAMG--ADFSWDLSAKEY 471 (487)
T ss_pred HHHHHhhCCHHHHHHHHHhhcc--cccCchhHHHHH
Confidence 1 223335555554443 567777654433
No 114
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=25.87 E-value=66 Score=24.68 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=19.0
Q ss_pred hHHHHHhcCCHHHHHHHHHHHH
Q 025504 195 NLKNILLSISEKRYRKMQMMVK 216 (252)
Q Consensus 195 ~l~~~L~~i~~~~~~~m~~~~~ 216 (252)
++.+.|+++|+||++++++.+.
T Consensus 82 ~lqkRle~l~~eE~~~L~~eie 103 (104)
T PF11460_consen 82 ELQKRLEELSPEELEALQAEIE 103 (104)
T ss_pred HHHHHHHhCCHHHHHHHHHHhc
Confidence 5888899999999999998764
No 115
>PF08621 RPAP1_N: RPAP1-like, N-terminal; InterPro: IPR013930 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the N-terminal region of RPAP-1 that is conserved from yeast to humans.
Probab=25.12 E-value=1.1e+02 Score=20.15 Aligned_cols=21 Identities=14% Similarity=0.107 Sum_probs=17.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 025504 197 KNILLSISEKRYRKMQMMVKK 217 (252)
Q Consensus 197 ~~~L~~i~~~~~~~m~~~~~~ 217 (252)
...|+++|+++|.+-|+.+..
T Consensus 9 ~~rL~~MS~eEI~~er~eL~~ 29 (49)
T PF08621_consen 9 EARLASMSPEEIEEEREELLE 29 (49)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 467999999999999887653
No 116
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=24.67 E-value=85 Score=28.98 Aligned_cols=42 Identities=24% Similarity=0.426 Sum_probs=31.7
Q ss_pred chHHHhhccceEEEeecCCCCCChhHHHHhhcCceeEEecCCCC
Q 025504 129 TDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFV 172 (252)
Q Consensus 129 ~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~GCIPVii~d~~~ 172 (252)
.+|...+.+.|-|+|- |..... -+.|+|.-|.|||++++...
T Consensus 124 ~~yp~af~n~kvvvv~-GwDy~~-~~~e~~k~~~~p~~~~n~~~ 165 (337)
T COG2247 124 EDYPNAFKNVKVVVVY-GWDYAD-ALMELMKEGIVPVILKNTSI 165 (337)
T ss_pred hhchhhhcCeEEEEEe-ccccHH-HHHHHHhcCcceeEeccccc
Confidence 3566677787888875 544322 89999999999999998643
No 117
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=22.45 E-value=2.3e+02 Score=22.66 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=28.8
Q ss_pred cceEEEeecCCCC-----CChhHHHHhhcCceeEEecCCC
Q 025504 137 SSKYCICAKGYEV-----HSPRVVEAIFYECVPVIISDNF 171 (252)
Q Consensus 137 ~S~FCL~p~G~~~-----~s~rl~eal~~GCIPVii~d~~ 171 (252)
+-|-||+-||.-. .....-.|-.+|.+=|||-++.
T Consensus 56 ~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~ 95 (139)
T cd04817 56 AGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNA 95 (139)
T ss_pred CccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCC
Confidence 5789999999755 5566777999999999997765
No 118
>PF10550 Toxin_36: Conantokin-G mollusc-toxin; InterPro: IPR005918 The conantokins are a family of neuroactive peptides found in the venoms of fish-hunting cone snails. They possess a relatively high number of residues (4-5) of the non-standard amino acid gamma-carboxyglutamic acid (Gla), which is generated by the post-translational modification of glutamate (Glu) residues. Conantokins are the only naturally produced peptides known to be N-methyl-D-aspartate (NMDA) receptor antagonists and show therapeutic promise in treating conditions associated with NMDA receptor dysfunction. In animal models they have exhibited anticonvulsant and anti-Parkinsonian properties and have provided neuroprotection within therapeutically acceptable times following transient focal brain ischemia [, , , ]. Upon binding of Ca2+ to Gla, conantokin undergoes a conformational transition from a distorted curvilinear 3(10) helix to a linear alpha-helix. The binding of Ca2+ to conantokin leads to the exposure of a hydrophobic region on the opposite face of the helix []. Conantokins share relatively few sequence elements, which include include sequence identity at the first four residues, homologous positioning of the two most C-terminal Gla residues, and an Arg preceding the most C-terminal Gla []. The conantokin family is currently known to include: Conotoxin G from Conus geographus (Geography cone) (Nubecula geographus). Conantokin-L from Conus lynceus (Lynceus cone). Conantokin-R from Conus radiatus (Rayed cone). Conantokin-T from Conus tulipa (Fish-hunting cone snail) (Tulip cone). ; PDB: 1ONT_A.
Probab=21.57 E-value=1.2e+02 Score=14.75 Aligned_cols=13 Identities=23% Similarity=0.314 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHH
Q 025504 205 EKRYRKMQMMVKK 217 (252)
Q Consensus 205 ~~~~~~m~~~~~~ 217 (252)
++++++|-+++.+
T Consensus 2 eee~~km~~~lar 14 (15)
T PF10550_consen 2 EEEVAKMAAELAR 14 (15)
T ss_dssp HHHHHHHHHHH-H
T ss_pred hHHHHHHHHHHhc
Confidence 5778888877643
No 119
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=20.45 E-value=1.1e+02 Score=19.49 Aligned_cols=42 Identities=14% Similarity=0.157 Sum_probs=31.8
Q ss_pred ChhHHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHh
Q 025504 151 SPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILL 201 (252)
Q Consensus 151 s~rl~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~ 201 (252)
..++++++.--.|+|..-.. ++ ..+++.|++++..++.++|.
T Consensus 17 ~~~i~~~L~~~~i~v~~i~~-----s~----~~is~~v~~~d~~~~~~~l~ 58 (63)
T cd04936 17 AAKMFEALAEAGINIEMIST-----SE----IKISCLIDEDDAEKAVRALH 58 (63)
T ss_pred HHHHHHHHHHCCCcEEEEEc-----cC----ceEEEEEeHHHHHHHHHHHH
Confidence 46799999999999976431 11 67889999988877766664
No 120
>COG3028 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.36 E-value=1.5e+02 Score=24.91 Aligned_cols=49 Identities=8% Similarity=0.211 Sum_probs=41.5
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHHhhhceeCCCCCCcCHHHHHHHHHHH
Q 025504 195 NLKNILLSISEKRYRKMQMMVKKVQQHFLWHPRPVKYDIFHMILHSIWY 243 (252)
Q Consensus 195 ~l~~~L~~i~~~~~~~m~~~~~~~~~~f~~~~~~~~~daf~~~~~~l~~ 243 (252)
.|.++|...|+.+...+|.-++.+++.-.-+.||..+..+-..++++..
T Consensus 133 Alt~~l~~~P~aDrq~LR~LvRna~kE~a~NKPPks~ReifQ~lk~l~~ 181 (187)
T COG3028 133 ALTEFLNQYPDADRQQLRTLIRNAKKEQAQNKPPKSFREIFQYLKELME 181 (187)
T ss_pred HHHHHHHHCCcccHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 3888999999999999999999999888888898888777677777654
Done!