BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025505
(252 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 17/142 (11%)
Query: 47 DNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE 106
D+ PLH AA +G+ ++++ L+S + K S+G T LH A K+ + + L+ +
Sbjct: 34 DSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK-DSDGRTPLHYAAKEGHKEIVKLLISK 92
Query: 107 AKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
+ KD +G T LH A K+IV+LLI + ++ +NT + +G+T L
Sbjct: 93 GAD------VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD------VNTSDSDGRTPL 140
Query: 167 QLCNANSQDSAF----KEIGWI 184
L + + K+ GW+
Sbjct: 141 DLAREHGNEEIVKLLEKQGGWL 162
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 13/113 (11%)
Query: 57 AALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLF 116
AA +GN D ++ L+ + + S+G T LH A K+ + + L+ + +
Sbjct: 11 AAENGNKDRVKDLIENGAD-VNASDSDGRTPLHYAAKEGHKEIVKLLISKGAD------V 63
Query: 117 TWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLC 169
KD +G T LH A K+IV+LLI + ++ +N + +G+T L
Sbjct: 64 NAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD------VNAKDSDGRTPLHYA 110
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 17/142 (11%)
Query: 47 DNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE 106
D+ PLH AA +G+ +V++ L+S + K S+G+T LHLA + + + L+ +
Sbjct: 34 DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK-DSDGKTPLHLAAENGHKEVVKLLLSQ 92
Query: 107 AKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
+ KD +G T LHLA N K++V+LL+ + ++ NT + +G+T L
Sbjct: 93 GAD------PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD------PNTSDSDGRTPL 140
Query: 167 QLCNANSQDSAF----KEIGWI 184
L + + K+ GW+
Sbjct: 141 DLAREHGNEEVVKLLEKQGGWL 162
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 13/124 (10%)
Query: 56 RAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHL 115
AA +GN D ++ L+ + + S+G+T LHLA + + + L+ + +
Sbjct: 10 EAAENGNKDRVKDLLENGAD-VNASDSDGKTPLHLAAENGHKEVVKLLLSQGAD------ 62
Query: 116 FTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQD 175
KD +G T LHLA N K++V+LL+ + ++ N + +G+T L L N
Sbjct: 63 PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD------PNAKDSDGKTPLHLAAENGHK 116
Query: 176 SAFK 179
K
Sbjct: 117 EVVK 120
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 67/132 (50%), Gaps = 8/132 (6%)
Query: 16 GETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPE 75
G+T +HL + +G E V++ + + D+ PLH AA +G+ +V++ L+S +
Sbjct: 37 GKTPLHLAAENGHKEVVKLLLSQGADPNAK-DSDGKTPLHLAAENGHKEVVKLLLSQGAD 95
Query: 76 SLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKL 135
K S+G+T LHLA + + + L+ + + D +G T L LA +
Sbjct: 96 PNAK-DSDGKTPLHLAAENGHKEVVKLLLSQGAD------PNTSDSDGRTPLDLAREHGN 148
Query: 136 KQIVELLIRENS 147
+++V+LL ++
Sbjct: 149 EEVVKLLEKQGG 160
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 12 KNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVS 71
K+ G+T +HL + +G E V++ + + D+ PLH AA +G+ +V++ L+S
Sbjct: 66 KDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK-DSDGKTPLHLAAENGHKEVVKLLLS 124
Query: 72 ICPESLEKLTSNGETALHLA 91
+ S+G T L LA
Sbjct: 125 QGADP-NTSDSDGRTPLDLA 143
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 17/142 (11%)
Query: 47 DNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE 106
D+ PLH AA +G+ +V++ L+S + K S+G T LH A + + + L+ +
Sbjct: 34 DSDGRTPLHHAAENGHKEVVKLLISKGADVNAK-DSDGRTPLHHAAENGHKEVVKLLISK 92
Query: 107 AKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
+ KD +G T LH A N K++V+LLI + ++ +NT + +G+T L
Sbjct: 93 GAD------VNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD------VNTSDSDGRTPL 140
Query: 167 QLCNANSQDSAF----KEIGWI 184
L + + K+ GW+
Sbjct: 141 DLAREHGNEEVVKLLEKQGGWL 162
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 13/123 (10%)
Query: 57 AALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLF 116
AA +GN D ++ L+ + + S+G T LH A + + + L+ + +
Sbjct: 11 AAENGNKDRVKDLIENGAD-VNASDSDGRTPLHHAAENGHKEVVKLLISKGAD------V 63
Query: 117 TWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDS 176
KD +G T LH A N K++V+LLI + ++ +N + +G+T L N
Sbjct: 64 NAKDSDGRTPLHHAAENGHKEVVKLLISKGAD------VNAKDSDGRTPLHHAAENGHKE 117
Query: 177 AFK 179
K
Sbjct: 118 VVK 120
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 8/128 (6%)
Query: 16 GETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPE 75
G T +HL + +G E V++ E ++ + D + PLH AA +G+ +V++ L+ +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 76 SLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKL 135
K NG T LHLA + + + L++ + KDK G T LHLA N
Sbjct: 61 VNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHLAARNGH 113
Query: 136 KQIVELLI 143
++V+LL+
Sbjct: 114 LEVVKLLL 121
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 13/122 (10%)
Query: 53 PLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRK 112
PLH AA +G+ +V++ L+ + K NG T LHLA + + + L++ +
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD--- 60
Query: 113 EHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNAN 172
KDK G T LHLA N ++V+LL+ ++ +N +K G+T L L N
Sbjct: 61 ---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHLAARN 111
Query: 173 SQ 174
Sbjct: 112 GH 113
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 12 KNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVS 71
K++ G T +HL + +G E V++ E ++ + D + PLH AA +G+ +V++ L+
Sbjct: 31 KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLE 89
Query: 72 ICPESLEKLTSNGETALHLAVKKSRSDAFEALVD 105
+ K NG T LHLA + + + L++
Sbjct: 90 AGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLE 122
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 83 NGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELL 142
NG T LHLA + + + L++ + KDK G T LHLA N ++V+LL
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHLAARNGHLEVVKLL 54
Query: 143 IRENSNRRIMIRINTVNKEGQTTLQLCNANSQ 174
+ ++ +N +K G+T L L N
Sbjct: 55 LEAGAD------VNAKDKNGRTPLHLAARNGH 80
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 17/142 (11%)
Query: 47 DNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE 106
D+ PLH AA +G+ ++++ L+S + K S+G T LH A + + + L+ +
Sbjct: 34 DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK-DSDGRTPLHYAAENGHKEIVKLLLSK 92
Query: 107 AKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
+ KD +G T LH A N K+IV+LL+ + ++ NT + +G+T L
Sbjct: 93 GAD------PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD------PNTSDSDGRTPL 140
Query: 167 QLCNANSQDSAF----KEIGWI 184
L + + K+ GW+
Sbjct: 141 DLAREHGNEEIVKLLEKQGGWL 162
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 17/120 (14%)
Query: 57 AALDGNSDVIRALV--SICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEH 114
AA +GN D ++ L+ P + + S+G T LH A + + + L+ + +
Sbjct: 11 AAENGNKDRVKDLLENGADPNASD---SDGRTPLHYAAENGHKEIVKLLLSKGAD----- 62
Query: 115 LFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQ 174
KD +G T LH A N K+IV+LL+ + ++ N + +G+T L N
Sbjct: 63 -PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD------PNAKDSDGRTPLHYAAENGH 115
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 17/142 (11%)
Query: 47 DNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE 106
D PLH AA +G+ +++ L+ + K +G T LHLA ++ + E L+
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 107 AKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
+ KDK+G T LHLA +IVE+L++ ++ +N +K G+T
Sbjct: 91 GAD------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD------VNAQDKFGKTPF 138
Query: 167 QLCNANSQDSAFKEIGWIIQRA 188
L + D+ ++I ++Q+A
Sbjct: 139 DL----AIDNGNEDIAEVLQKA 156
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 13/116 (11%)
Query: 54 LHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKE 113
L AA G D +R L++ + K +G T LHLA ++ + E L+ +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGAD---- 60
Query: 114 HLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLC 169
KDK+G T LHLA +IVE+L++ ++ +N +K+G T L L
Sbjct: 61 --VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD------VNAKDKDGYTPLHLA 108
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 17/142 (11%)
Query: 47 DNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE 106
D PLH AA +G+ +++ L+ + K +G T LHLA ++ + E L+
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 107 AKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
+ KDK+G T LHLA +IVE+L++ ++ +N +K G+T
Sbjct: 91 GAD------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD------VNAQDKFGKTPF 138
Query: 167 QLCNANSQDSAFKEIGWIIQRA 188
L + +I ++Q+A
Sbjct: 139 DLAIREGHE----DIAEVLQKA 156
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 13/113 (11%)
Query: 57 AALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLF 116
AA G D +R L++ + K +G T LHLA ++ + E L+ +
Sbjct: 9 AARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGAD------V 61
Query: 117 TWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLC 169
KDK+G T LHLA +IVE+L++ ++ +N +K+G T L L
Sbjct: 62 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD------VNAKDKDGYTPLHLA 108
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 17/140 (12%)
Query: 47 DNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE 106
D PLH AA +G+ +++ L+ + K +G T LHLA ++ + E L+
Sbjct: 44 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKA 102
Query: 107 AKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
+ KDK+G T LHLA +IVE+L++ ++ +N +K G+T
Sbjct: 103 GAD------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD------VNAQDKFGKTAF 150
Query: 167 QLCNANSQDSAFKEIGWIIQ 186
+ S D+ +++ I+Q
Sbjct: 151 DI----SIDNGNEDLAEILQ 166
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 13/113 (11%)
Query: 57 AALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLF 116
AA G D +R L++ + K +G T LHLA ++ + E L+ +
Sbjct: 21 AARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGAD------V 73
Query: 117 TWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLC 169
KDK+G T LHLA +IVE+L++ ++ +N +K+G T L L
Sbjct: 74 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD------VNAKDKDGYTPLHLA 120
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 73/147 (49%), Gaps = 12/147 (8%)
Query: 8 LASIKNQRGETTMHLLSTDGDAETVR----IFGEINRELCLEVDNSSMIPLHRAALDGNS 63
+A+ ++ G+T +H+ G+ V +F + REL + +N PLH A +
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI-YNNLRQTPLHLAVITTLP 59
Query: 64 DVIRALVSI--CPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDK 121
V+R LV+ P +L++ +G+TA HLA + AL+D A + ++
Sbjct: 60 SVVRLLVTAGASPMALDR---HGQTAAHLACEHRSPTCLRALLDSAAPGTLD--LEARNY 114
Query: 122 EGNTVLHLATLNKLKQIVELLIRENSN 148
+G T LH+A + ++ V+LL+ ++
Sbjct: 115 DGLTALHVAVNTECQETVQLLLERGAD 141
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 92/209 (44%), Gaps = 43/209 (20%)
Query: 8 LASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIR 67
LA+ +Q T +H + G E V ++ + + D++ PLH AA G ++++
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLHIAASAGRDEIVK 90
Query: 68 ALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVD-----EAKNHRKE--------- 113
AL+ + + + NG T LH A K+R + L++ +AK+H +
Sbjct: 91 ALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAK 149
Query: 114 ------HLFTW-------KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNK 160
H+ + +D EGNT LHLA + + +LL+ + ++ I NK
Sbjct: 150 GNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS------IYIENK 203
Query: 161 EGQTTLQLCNANSQDSAFKEIGWIIQRAI 189
E +T LQ+ +G I++R +
Sbjct: 204 EEKTPLQVAKGG--------LGLILKRMV 224
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 92/209 (44%), Gaps = 43/209 (20%)
Query: 8 LASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIR 67
LA+ +Q T +H + G E V ++ + + D++ PLH AA G ++++
Sbjct: 33 LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLHIAASAGRDEIVK 91
Query: 68 ALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVD-----EAKNHRKE--------- 113
AL+ + + + NG T LH A K+R + L++ +AK+H +
Sbjct: 92 ALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAK 150
Query: 114 ------HLFTW-------KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNK 160
H+ + +D EGNT LHLA + + +LL+ + ++ I NK
Sbjct: 151 GNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS------IYIENK 204
Query: 161 EGQTTLQLCNANSQDSAFKEIGWIIQRAI 189
E +T LQ+ +G I++R +
Sbjct: 205 EEKTPLQVAKGG--------LGLILKRMV 225
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 90/207 (43%), Gaps = 43/207 (20%)
Query: 8 LASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIR 67
LA+ +Q T +H + G E V ++ + + D++ PLH AA G ++++
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLHIAASAGXDEIVK 90
Query: 68 ALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVD-----EAKNH------------ 110
AL+ + + + NG T LH A K+R + L++ +AK+H
Sbjct: 91 ALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAK 149
Query: 111 ---RKEHLFTW-------KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNK 160
+ H+ + +D EGNT LHLA + + + L+ + ++ I NK
Sbjct: 150 GNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS------IYIENK 203
Query: 161 EGQTTLQLCNANSQDSAFKEIGWIIQR 187
E +T LQ+ +G I++R
Sbjct: 204 EEKTPLQVAKGG--------LGLILKR 222
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 17/135 (12%)
Query: 53 PLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRK 112
PLH AA G+ +++ L+ + + + G T LHLA + E L+ +
Sbjct: 50 PLHLAAKTGHLEIVEVLLKYGAD-VNAWDNYGATPLHLAADNGHLEIVEVLLKHGAD--- 105
Query: 113 EHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNAN 172
KD EG T LHLA + +IVE+L++ ++ +N +K G+T +
Sbjct: 106 ---VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGAD------VNAQDKFGKTAFDI---- 152
Query: 173 SQDSAFKEIGWIIQR 187
S D+ +++ I+Q+
Sbjct: 153 SIDNGNEDLAEILQK 167
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Query: 84 GETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
G T LHLA K + E L+ + + W D G T LHLA N +IVE+L+
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGAD-----VNAW-DNYGATPLHLAADNGHLEIVEVLL 100
Query: 144 RENSNRRIMIRINTVNKEGQTTLQLC 169
+ ++ +N + EG T L L
Sbjct: 101 KHGAD------VNAKDYEGFTPLHLA 120
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 13 NQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSI 72
+ G T +HL + +G E V + + ++ + D PLH AA DG+ +++ L+
Sbjct: 77 DNYGATPLHLAADNGHLEIVEVLLKHGADVNAK-DYEGFTPLHLAAYDGHLEIVEVLLKY 135
Query: 73 CPESLEKLTSNGETALHLAVKKSRSDAFEAL 103
+ + G+TA +++ D E L
Sbjct: 136 GAD-VNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 90/207 (43%), Gaps = 43/207 (20%)
Query: 8 LASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIR 67
LA+ +Q T +H + G E V ++ + + D++ PLH AA G ++++
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLHIAASAGRDEIVK 90
Query: 68 ALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVD-----EAKNH------------ 110
AL+ + + + NG T LH A K+R + L++ +AK+H
Sbjct: 91 ALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAK 149
Query: 111 ---RKEHLFTW-------KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNK 160
+ H+ + +D EGNT LHLA + + + L+ + ++ I NK
Sbjct: 150 GNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS------IYIENK 203
Query: 161 EGQTTLQLCNANSQDSAFKEIGWIIQR 187
E +T LQ+ +G I++R
Sbjct: 204 EEKTPLQVAKGG--------LGLILKR 222
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 13/134 (9%)
Query: 46 VDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVD 105
VDN+ + PLH AA+ G+ +++ L+ + ++ G T LHLA + E L+
Sbjct: 43 VDNTGLTPLHLAAVSGHLEIVEVLLKHGAD-VDAADVYGFTPLHLAAMTGHLEIVEVLLK 101
Query: 106 EAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTT 165
+ D G+T LHLA +IVE+L++ ++ +N +K G+T
Sbjct: 102 YGAD------VNAFDMTGSTPLHLAADEGHLEIVEVLLKYGAD------VNAQDKFGKTA 149
Query: 166 LQLCNANSQDSAFK 179
+ N + K
Sbjct: 150 FDISIDNGNEDLAK 163
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 53 PLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRK 112
PLH AA +G+ +V++ L+ + K NG T LHLA + + + L++ +
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD--- 60
Query: 113 EHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
KDK G T LHLA N ++V+LL+
Sbjct: 61 ---VNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 83 NGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELL 142
NG T LHLA + + + L++ + KDK G T LHLA N ++V+LL
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHLAARNGHLEVVKLL 54
Query: 143 IRENSNRRIMIRINTVNKEGQTTLQLCNANSQ 174
+ ++ +N +K G+T L L N
Sbjct: 55 LEAGAD------VNAKDKNGRTPLHLAARNGH 80
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 16 GETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPE 75
G T +HL + +G E V++ E ++ + D + PLH AA +G+ +V++ L+ +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 76 SLEKLTSNGETALHLAVKKSRSDAFEALVD 105
K NG T LHLA + + + L++
Sbjct: 61 VNAK-DKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 12 KNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALV 70
K++ G T +HL + +G E V++ E ++ + D + PLH AA +G+ +V++ L+
Sbjct: 31 KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLL 88
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 68/141 (48%), Gaps = 17/141 (12%)
Query: 47 DNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE 106
D S + PLH AA G+ +++ L+ + + + G T LHLA + E L+
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIXGSTPLHLAALIGHLEIVEVLLKH 102
Query: 107 AKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
+ + TW G+T LHLA + +IVE+L++ ++ +N +K G+T
Sbjct: 103 GADVNA--VDTW----GDTPLHLAAIMGHLEIVEVLLKHGAD------VNAQDKFGKTAF 150
Query: 167 QLCNANSQDSAFKEIGWIIQR 187
+ S D+ +++ I+Q+
Sbjct: 151 DI----SIDNGNEDLAEILQK 167
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 8/134 (5%)
Query: 13 NQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSI 72
+ G T +HL +T G E V + + ++ +D PLH AAL G+ +++ L+
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVN-AIDIXGSTPLHLAALIGHLEIVEVLLKH 102
Query: 73 CPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATL 132
+ + + + G+T LHLA + E L+ + +DK G T ++
Sbjct: 103 GAD-VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD------VNAQDKFGKTAFDISID 155
Query: 133 NKLKQIVELLIREN 146
N + + E+L + N
Sbjct: 156 NGNEDLAEILQKLN 169
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 13/114 (11%)
Query: 56 RAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHL 115
AA G D +R L++ + + ++G T LHLA + E L+ +
Sbjct: 20 EAARAGQDDEVRILMANGAD-VNATDASGLTPLHLAATYGHLEIVEVLLKHGAD------ 72
Query: 116 FTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLC 169
D G+T LHLA L +IVE+L++ ++ +N V+ G T L L
Sbjct: 73 VNAIDIXGSTPLHLAALIGHLEIVEVLLKHGAD------VNAVDTWGDTPLHLA 120
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 19/141 (13%)
Query: 47 DNSSMIPLHRAALDGNSDVIRALVSICPE-SLEKLTSNGETALHLAVKKSRSDAFEALVD 105
DN PLH AA +G+ +++ L+ + + LT G T LHLA + E L+
Sbjct: 44 DNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLT--GITPLHLAAATGHLEIVEVLLK 101
Query: 106 EAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTT 165
+ D +G+T LHLA +IVE+L++ ++ +N +K G+T
Sbjct: 102 HGAD------VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGAD------VNAQDKFGKTA 149
Query: 166 LQLCNANSQDSAFKEIGWIIQ 186
+ S D+ +++ I+Q
Sbjct: 150 FDI----SIDNGNEDLAEILQ 166
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 68/141 (48%), Gaps = 17/141 (12%)
Query: 47 DNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE 106
D S + PLH AA G+ +++ L+ + + + G T LHLA + E L+
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIMGSTPLHLAALIGHLEIVEVLLKH 102
Query: 107 AKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
+ + TW G+T LHLA + +IVE+L++ ++ +N +K G+T
Sbjct: 103 GADVNA--VDTW----GDTPLHLAAIMGHLEIVEVLLKHGAD------VNAQDKFGKTAF 150
Query: 167 QLCNANSQDSAFKEIGWIIQR 187
+ S D+ +++ I+Q+
Sbjct: 151 DI----SIDNGNEDLAEILQK 167
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 8/134 (5%)
Query: 13 NQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSI 72
+ G T +HL +T G E V + + ++ +D PLH AAL G+ +++ L+
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVN-AIDIMGSTPLHLAALIGHLEIVEVLLKH 102
Query: 73 CPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATL 132
+ + + + G+T LHLA + E L+ + +DK G T ++
Sbjct: 103 GAD-VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD------VNAQDKFGKTAFDISID 155
Query: 133 NKLKQIVELLIREN 146
N + + E+L + N
Sbjct: 156 NGNEDLAEILQKLN 169
Score = 33.9 bits (76), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 13/114 (11%)
Query: 56 RAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHL 115
AA G D +R L++ + + ++G T LHLA + E L+ +
Sbjct: 20 EAARAGQDDEVRILMANGAD-VNATDASGLTPLHLAATYGHLEIVEVLLKHGAD------ 72
Query: 116 FTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLC 169
D G+T LHLA L +IVE+L++ ++ +N V+ G T L L
Sbjct: 73 VNAIDIMGSTPLHLAALIGHLEIVEVLLKHGAD------VNAVDTWGDTPLHLA 120
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 7/90 (7%)
Query: 53 PLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRK 112
PLH AA +G+++ ++ L+S + + + +G T LHLA K ++ + L+ + +
Sbjct: 12 PLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD--- 67
Query: 113 EHLFTWKDKEGNTVLHLATLNKLKQIVELL 142
+ K+GNT HLA N +IV+LL
Sbjct: 68 ---VNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 12/94 (12%)
Query: 81 TSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVE 140
+ +G T LH A K ++ + L+ + + + K+GNT LHLA N +IV+
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGAD------VNARSKDGNTPLHLAAKNGHAEIVK 59
Query: 141 LLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQ 174
LL+ + ++ +N +K+G T L N
Sbjct: 60 LLLAKGAD------VNARSKDGNTPEHLAKKNGH 87
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 17/141 (12%)
Query: 47 DNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE 106
DN+ PLH AA G+ +++ L+ + ++ G T LHLA + E L+
Sbjct: 44 DNTGTTPLHLAAYSGHLEIVEVLLKHGAD-VDASDVFGYTPLHLAAYWGHLEIVEVLLKN 102
Query: 107 AKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
+ D +G T LHLA +IVE+L++ ++ +N +K G+T
Sbjct: 103 GAD------VNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD------VNAQDKFGKTAF 150
Query: 167 QLCNANSQDSAFKEIGWIIQR 187
+ S D+ +++ I+Q+
Sbjct: 151 DI----SIDNGNEDLAEILQK 167
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 30/167 (17%)
Query: 27 GDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPE--SLEKL 80
G + VRI ++N E D+S PLH AA+ G+ +++ L+ + + +K+
Sbjct: 25 GQDDEVRILMANGADVNAE-----DDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKM 79
Query: 81 TSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVE 140
G+T LHLA + E L+ + D G T LHLA +IVE
Sbjct: 80 ---GDTPLHLAALYGHLEIVEVLLKNGAD------VNATDTYGFTPLHLAADAGHLEIVE 130
Query: 141 LLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQR 187
+L++ ++ +N +K G+T + S D+ +++ I+Q+
Sbjct: 131 VLLKYGAD------VNAQDKFGKTAFDI----SIDNGNEDLAEILQK 167
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 13/114 (11%)
Query: 56 RAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHL 115
AA G D +R L++ + + +G+T LHLA K + E L+ +
Sbjct: 20 EAARAGQDDEVRILMANGAD-VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGAD------ 72
Query: 116 FTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLC 169
DK G+T LHLA L +IVE+L++ ++ +N + G T L L
Sbjct: 73 VNAADKMGDTPLHLAALYGHLEIVEVLLKNGAD------VNATDTYGFTPLHLA 120
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 16/165 (9%)
Query: 6 PQLASIKNQRGETTMHL-LSTDGDAETVRIFGEI-NRELCLEVDNSSMIPLHRAALDGNS 63
P L K+Q G +H +S T + ++ N L D+S P H A GN
Sbjct: 26 PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNL 85
Query: 64 DVIRALVS--ICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDK 121
+V+++L + P+ L K+T+ G T LHLAV K + + L++ + R KDK
Sbjct: 86 EVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI------KDK 138
Query: 122 EGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
LH A +++ELL + +N +K+G T L
Sbjct: 139 FNQIPLHRAASVGSLKLIELLCGLGKS-----AVNWQDKQGWTPL 178
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 6 PQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDV 65
P L I NQ G T +HL E + E + ++ D + IPLHRAA G+ +
Sbjct: 98 PDLNKITNQ-GVTCLHLAVGKKWFEVSQFLIENGASVRIK-DKFNQIPLHRAASVGSLKL 155
Query: 66 IRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE 106
I L + ++ G T L A+ + DA LV++
Sbjct: 156 IELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 7/119 (5%)
Query: 50 SMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKN 109
S PLH+A ++ ++ L+ P L + +G LH +V + L+ + +N
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61
Query: 110 HRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL 168
+L + D G T H+A ++V+ L +R + +N + +G T L L
Sbjct: 62 ---VNLDDYPDDSGWTPFHIACSVGNLEVVKSLY----DRPLKPDLNKITNQGVTCLHL 113
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 16/165 (9%)
Query: 6 PQLASIKNQRGETTMHL-LSTDGDAETVRIFGEI-NRELCLEVDNSSMIPLHRAALDGNS 63
P L K+Q G +H +S T + ++ N L D+S P H A GN
Sbjct: 26 PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNL 85
Query: 64 DVIRALVS--ICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDK 121
+V+++L + P+ L K+T+ G T LHLAV K + + L++ + R KDK
Sbjct: 86 EVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI------KDK 138
Query: 122 EGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
LH A +++ELL + +N +K+G T L
Sbjct: 139 FNQIPLHRAASVGSLKLIELLCGLGKS-----AVNWQDKQGWTPL 178
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 6 PQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDV 65
P L I NQ G T +HL E + E + ++ D + IPLHRAA G+ +
Sbjct: 98 PDLNKITNQ-GVTCLHLAVGKKWFEVSQFLIENGASVRIK-DKFNQIPLHRAASVGSLKL 155
Query: 66 IRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE 106
I L + ++ G T L A+ + DA LV++
Sbjct: 156 IELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 7/119 (5%)
Query: 50 SMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKN 109
S PLH+A ++ ++ L+ P L + +G LH +V + L+ + +N
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61
Query: 110 HRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL 168
+L + D G T H+A ++V+ L +R + +N + +G T L L
Sbjct: 62 ---VNLDDYPDDSGWTPFHIACSVGNLEVVKSLY----DRPLKPDLNKITNQGVTCLHL 113
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 16/165 (9%)
Query: 6 PQLASIKNQRGETTMHL-LSTDGDAETVRIFGEI-NRELCLEVDNSSMIPLHRAALDGNS 63
P L K+Q G +H +S T + ++ N L D+S P H A GN
Sbjct: 26 PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNL 85
Query: 64 DVIRALVS--ICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDK 121
+V+++L + P+ L K+T+ G T LHLAV K + + L++ + R KDK
Sbjct: 86 EVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI------KDK 138
Query: 122 EGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
LH A +++ELL + +N +K+G T L
Sbjct: 139 FNQIPLHRAASVGSLKLIELLCGLGKS-----AVNWQDKQGWTPL 178
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 6 PQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDV 65
P L I NQ G T +HL E + E + ++ D + IPLHRAA G+ +
Sbjct: 98 PDLNKITNQ-GVTCLHLAVGKKWFEVSQFLIENGASVRIK-DKFNQIPLHRAASVGSLKL 155
Query: 66 IRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE 106
I L + ++ G T L A+ + DA LV++
Sbjct: 156 IELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 7/119 (5%)
Query: 50 SMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKN 109
S PLH+A ++ ++ L+ P L + +G LH +V + L+ + +N
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61
Query: 110 HRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL 168
+L + D G T H+A ++V+ L +R + +N + +G T L L
Sbjct: 62 ---VNLDDYPDDSGWTPFHIACSVGNLEVVKSLY----DRPLKPDLNKITNQGVTCLHL 113
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 17/141 (12%)
Query: 47 DNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE 106
D S PLH AA +G+ +++ L+ + + + G T L LA + E L+
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAALFGHLEIVEVLLKN 102
Query: 107 AKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
+ D EG+T LHLA + +IVE+L++ ++ +N +K G+T
Sbjct: 103 GAD------VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD------VNAQDKFGKTAF 150
Query: 167 QLCNANSQDSAFKEIGWIIQR 187
+ S D+ +++ I+Q+
Sbjct: 151 DI----SIDNGNEDLAEILQK 167
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 119 KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLC 169
+D G T LHLA N +IVE+L++ ++ +N V+ G T L+L
Sbjct: 43 EDASGWTPLHLAAFNGHLEIVEVLLKNGAD------VNAVDHAGMTPLRLA 87
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 26/164 (15%)
Query: 27 GDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTS 82
G + VRI ++N E D PLH AA G+ +++ L+ + + L
Sbjct: 25 GQDDEVRILMANGADVNAE-----DTYGDTPLHLAARVGHLEIVEVLLKNGAD-VNALDF 78
Query: 83 NGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELL 142
+G T LHLA K+ + E L+ + D G+T LHLA +IVE+L
Sbjct: 79 SGSTPLHLAAKRGHLEIVEVLLKYGAD------VNADDTIGSTPLHLAADTGHLEIVEVL 132
Query: 143 IRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQ 186
++ ++ +N +K G+T + S D+ +++ I+Q
Sbjct: 133 LKYGAD------VNAQDKFGKTAFDI----SIDNGNEDLAEILQ 166
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 13/116 (11%)
Query: 54 LHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKE 113
L AA G D +R L++ + + + G+T LHLA + + E L+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGAD-VNAEDTYGDTPLHLAARVGHLEIVEVLLKNGAD---- 72
Query: 114 HLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLC 169
D G+T LHLA +IVE+L++ ++ +N + G T L L
Sbjct: 73 --VNALDFSGSTPLHLAAKRGHLEIVEVLLKYGAD------VNADDTIGSTPLHLA 120
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Query: 47 DNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE 106
D++ + PLH AA +G +++ L+ + + S G T LHLA + E L+
Sbjct: 36 DDNGLTPLHLAAANGQLEIVEVLLKNGAD-VNASDSAGITPLHLAAYDGHLEIVEVLLKH 94
Query: 107 AKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSN 148
+ D+ G T LHLA L+ +IVE+L++ ++
Sbjct: 95 GAD------VNAYDRAGWTPLHLAALSGQLEIVEVLLKHGAD 130
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 17/141 (12%)
Query: 47 DNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE 106
D+ PLH AA G+ +++ L+ + + ++G T LHLA + E L+
Sbjct: 44 DDQGSTPLHLAAWIGHPEIVEVLLKHGAD-VNARDTDGWTPLHLAADNGHLEIVEVLLKY 102
Query: 107 AKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
+ +D G T LHLA +IVE+L++ ++ +N +K G+T
Sbjct: 103 GAD------VNAQDAYGLTPLHLAADRGHLEIVEVLLKHGAD------VNAQDKFGKTAF 150
Query: 167 QLCNANSQDSAFKEIGWIIQR 187
+ S D+ +++ I+Q+
Sbjct: 151 DI----SIDNGNEDLAEILQK 167
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 13/114 (11%)
Query: 56 RAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHL 115
AA G D +R L++ + + G T LHLA + E L+ +
Sbjct: 20 EAARAGQDDEVRILMANGAD-VNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGAD------ 72
Query: 116 FTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLC 169
+D +G T LHLA N +IVE+L++ ++ +N + G T L L
Sbjct: 73 VNARDTDGWTPLHLAADNGHLEIVEVLLKYGAD------VNAQDAYGLTPLHLA 120
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 17/141 (12%)
Query: 47 DNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE 106
D + PLH AA G+ +++ L+ + K S G T LHLA ++ + E L+
Sbjct: 44 DFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAK-DSLGVTPLHLAARRGHLEIVEVLLKN 102
Query: 107 AKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
+ D G T LHLA +IVE+L++ ++ +N +K G+T
Sbjct: 103 GAD------VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGAD------VNAQDKFGKTAF 150
Query: 167 QLCNANSQDSAFKEIGWIIQR 187
+ S D+ +++ I+Q+
Sbjct: 151 DI----SIDNGNEDLAEILQK 167
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 13/113 (11%)
Query: 57 AALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLF 116
AA G D +R L++ + + G T LHLA + E L+ +
Sbjct: 21 AARAGQDDEVRILMANGAD-VNARDFTGWTPLHLAAHFGHLEIVEVLLKNGAD------V 73
Query: 117 TWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLC 169
KD G T LHLA +IVE+L++ ++ +N + G T L L
Sbjct: 74 NAKDSLGVTPLHLAARRGHLEIVEVLLKNGAD------VNASDSHGFTPLHLA 120
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 47 DNSSMIPLHRAALDGNSDVIRALVSI-CPESLEKLTSNGETALHLAVKKSRSDAFEALVD 105
+N PLH A + ++ AL+ C L G T LHLA ++ + L
Sbjct: 39 NNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDF--RGNTPLHLACEQGCLASVGVLTQ 96
Query: 106 EAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
+ + G+T LHLA+++ IVELL+
Sbjct: 97 SCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLV 134
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
Query: 11 IKNQRGETTMHLLSTDGDAETVRIFGEINRELCLE-----VDNSSMIPLHRAALDGNSDV 65
+++ RG T +HL G +V + + L + + LH A++ G +
Sbjct: 70 LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGI 129
Query: 66 IRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALV 104
+ LVS+ + + NG TALHLAV D L+
Sbjct: 130 VELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 168
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 85 ETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIR 144
+T LHLAV ++ + EAL+ + +D GNT LHLA V +L +
Sbjct: 43 QTPLHLAVITNQPEIAEALLGAGCDPE------LRDFRGNTPLHLACEQGCLASVGVLTQ 96
Query: 145 ENSNRRIMIRINTVNKEGQTTLQL 168
+ + + N G T L L
Sbjct: 97 SCTTPHLHSILKATNYNGHTCLHL 120
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 47 DNSSMIPLHRAALDGNSDVIRALVSI-CPESLEKLTSNGETALHLAVKKSRSDAFEALVD 105
+N PLH A + ++ AL+ C L G T LHLA ++ + L
Sbjct: 42 NNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDF--RGNTPLHLACEQGCLASVGVLTQ 99
Query: 106 EAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
+ + G+T LHLA+++ IVELL+
Sbjct: 100 SCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLV 137
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
Query: 11 IKNQRGETTMHLLSTDGDAETVRIFGEINRELCLE-----VDNSSMIPLHRAALDGNSDV 65
+++ RG T +HL G +V + + L + + LH A++ G +
Sbjct: 73 LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGI 132
Query: 66 IRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALV 104
+ LVS+ + + NG TALHLAV D L+
Sbjct: 133 VELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 171
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 85 ETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIR 144
+T LHLAV ++ + EAL+ + +D GNT LHLA V +L +
Sbjct: 46 QTPLHLAVITNQPEIAEALLGAGCDPE------LRDFRGNTPLHLACEQGCLASVGVLTQ 99
Query: 145 ENSNRRIMIRINTVNKEGQTTLQL 168
+ + + N G T L L
Sbjct: 100 SCTTPHLHSILKATNYNGHTCLHL 123
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 64/138 (46%), Gaps = 17/138 (12%)
Query: 50 SMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKN 109
+ PLH +G+ ++I L+ + + +G T LHLA + + E L+ +
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAAD-VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGAD 105
Query: 110 HRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLC 169
D +G T LHLA + +IVE+L++ ++ +N +K G+T +
Sbjct: 106 ------VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGAD------VNAQDKFGKTAFDI- 152
Query: 170 NANSQDSAFKEIGWIIQR 187
S D+ +++ I+Q+
Sbjct: 153 ---SIDNGNEDLAEILQK 167
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 13 NQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSI 72
++ G T +HL + G E V + + ++ +D PLH AA DG+ +++ L+
Sbjct: 77 DKSGWTPLHLAAYRGHLEIVEVLLKYGADVN-AMDYQGYTPLHLAAEDGHLEIVEVLLKY 135
Query: 73 CPESLEKLTSNGETALHLAVKKSRSDAFEAL 103
+ + G+TA +++ D E L
Sbjct: 136 GAD-VNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 84 GETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
GETALHLA + SRSDA + L++ + + +D G T LH A + + ++LI
Sbjct: 58 GETALHLAARYSRSDAAKRLLEASAD------ANIQDNMGRTPLHAAVSADAQGVFQILI 111
Query: 144 R 144
R
Sbjct: 112 R 112
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 74/196 (37%), Gaps = 15/196 (7%)
Query: 7 QLASIKNQR---GETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNS 63
Q AS+ NQ GET +HL + ++ + E + + ++ DN PLH A
Sbjct: 46 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHAAVSADAQ 104
Query: 64 DVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEG 123
V + L+ L+ +G T L LA + + E L++ + D G
Sbjct: 105 GVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD------VNAVDDLG 158
Query: 124 NTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGW 183
+ LH A +L++ +N+ + N+E S ++A +
Sbjct: 159 KSALHWAAAVNNVDAAVVLLKNGANKDMQ-----NNREETPLFLAAREGSYETAKVLLDH 213
Query: 184 IIQRAIAQQSPQLPAD 199
R I +LP D
Sbjct: 214 FANRDITDHMDRLPRD 229
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 84 GETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
GETALHLA + SRSDA + L++ + + +D G T LH A + + ++LI
Sbjct: 57 GETALHLAARYSRSDAAKRLLEASAD------ANIQDNMGRTPLHAAVSADAQGVFQILI 110
Query: 144 R 144
R
Sbjct: 111 R 111
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 74/196 (37%), Gaps = 15/196 (7%)
Query: 7 QLASIKNQR---GETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNS 63
Q AS+ NQ GET +HL + ++ + E + + ++ DN PLH A
Sbjct: 45 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHAAVSADAQ 103
Query: 64 DVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEG 123
V + L+ L+ +G T L LA + + E L++ + D G
Sbjct: 104 GVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD------VNAVDDLG 157
Query: 124 NTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGW 183
+ LH A +L++ +N+ + N+E S ++A +
Sbjct: 158 KSALHWAAAVNNVDAAVVLLKNGANKDMQ-----NNREETPLFLAAREGSYETAKVLLDH 212
Query: 184 IIQRAIAQQSPQLPAD 199
R I +LP D
Sbjct: 213 FANRDITDHMDRLPRD 228
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 84 GETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
GETALHLA + SRSDA + L++ + + +D G T LH A + + ++LI
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASAD------ANIQDNMGRTPLHAAVSADAQGVFQILI 78
Query: 144 R 144
R
Sbjct: 79 R 79
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 74/196 (37%), Gaps = 15/196 (7%)
Query: 7 QLASIKNQR---GETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNS 63
Q AS+ NQ GET +HL + ++ + E + + ++ DN PLH A
Sbjct: 13 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHAAVSADAQ 71
Query: 64 DVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEG 123
V + L+ L+ +G T L LA + + E L++ + D G
Sbjct: 72 GVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD------VNAVDDLG 125
Query: 124 NTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGW 183
+ LH A +L++ +N+ + N+E S ++A +
Sbjct: 126 KSALHWAAAVNNVDAAVVLLKNGANKDMQ-----NNREETPLFLAAREGSYETAKVLLDH 180
Query: 184 IIQRAIAQQSPQLPAD 199
R I +LP D
Sbjct: 181 FANRDITDHMDRLPRD 196
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 70/190 (36%), Gaps = 26/190 (13%)
Query: 12 KNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMI----PLHRAALDGNSDVIR 67
+ GET +H+ + + E + E EL E S + LH A ++ N +++R
Sbjct: 33 RGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVR 92
Query: 68 ALV------------SICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHL 115
AL+ S+ L GE L A + L++ + R +
Sbjct: 93 ALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQ-- 150
Query: 116 FTWKDKEGNTVLHLATLNKLK----QIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNA 171
D GNTVLH+ L K Q+ LL+ + + N +G T +L
Sbjct: 151 ----DSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGV 206
Query: 172 NSQDSAFKEI 181
F+ +
Sbjct: 207 EGNIVMFQHL 216
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 53 PLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRK 112
PL AA + + + L+ + + + GETALH+A +A L++ A
Sbjct: 6 PLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVF 65
Query: 113 EHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
E + T + EG T LH+A +N+ +V L+
Sbjct: 66 EPM-TSELYEGQTALHIAVINQNVNLVRALL 95
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 17/141 (12%)
Query: 47 DNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE 106
D+ PLH AA G+ +++ L+ + + S G T LHLA + + E L+
Sbjct: 44 DHVGWTPLHLAAYFGHLEIVEVLLKNGAD-VNADDSLGVTPLHLAADRGHLEVVEVLLKN 102
Query: 107 AKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
+ D G T LHLA +IVE+L++ ++ +N +K G+T
Sbjct: 103 GAD------VNANDHNGFTPLHLAANIGHLEIVEVLLKHGAD------VNAQDKFGKTAF 150
Query: 167 QLCNANSQDSAFKEIGWIIQR 187
+ S D+ +++ I+Q+
Sbjct: 151 DI----SIDNGNEDLAEILQK 167
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 14/160 (8%)
Query: 10 SIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRAL 69
++ N + ET +H+ + G E + + N+ PLH AA G++++++ L
Sbjct: 41 NVSNVKVETPLHMAARAGHTEVAKYLLQ-NKAKVNAKAKDDQTPLHCAARIGHTNMVKLL 99
Query: 70 VSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHL 129
+ T+ G T LH+A ++ + AL++ KE K+G T LH+
Sbjct: 100 LENNANP-NLATTAGHTPLHIAAREGHVETVLALLE------KEASQACMTKKGFTPLHV 152
Query: 130 ATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLC 169
A ++ ELL+ +++ N K G T L +
Sbjct: 153 AAKYGKVRVAELLLERDAHP------NAAGKNGLTPLHVA 186
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 13/98 (13%)
Query: 16 GETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVS 71
G T +H+ S G+ + V+ ++N + L PLH+AA G++D++ L+
Sbjct: 311 GYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYS-----PLHQAAQQGHTDIVTLLLK 365
Query: 72 ICPESLEKLTSNGETALHLAVKK---SRSDAFEALVDE 106
S +++S+G T L +A + S +D + + DE
Sbjct: 366 NG-ASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDE 402
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 19/122 (15%)
Query: 51 MIPLHRAALDGNSDVIRALVSICPESLEKLTSNG--ETALHLAVKKSRSDAFEALV-DEA 107
+ PLH A+ G+ +++ L+ SN ET LH+A + ++ + L+ ++A
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQ---RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA 71
Query: 108 KNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQ 167
K K K+ T LH A +V+LL+ N+N N G T L
Sbjct: 72 K-------VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANP------NLATTAGHTPLH 118
Query: 168 LC 169
+
Sbjct: 119 IA 120
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 84 GETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
GETALHLA + SRSDA + L++ + + +D G T LH A + + ++L+
Sbjct: 22 GETALHLAARYSRSDAAKRLLEASAD------AXIQDNMGRTPLHAAVSADAQGVFQILL 75
Query: 144 R 144
R
Sbjct: 76 R 76
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 76/196 (38%), Gaps = 15/196 (7%)
Query: 7 QLASIKNQR---GETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNS 63
Q AS+ NQ GET +HL + ++ + E + + ++ DN PLH A
Sbjct: 10 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQ-DNMGRTPLHAAVSADAQ 68
Query: 64 DVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEG 123
V + L+ L+ +G T L LA + A E ++++ N + D G
Sbjct: 69 GVFQILLRNRATDLDARMHDGTTPLILAARL----ALEGMLEDLINSHAD--VNAVDDLG 122
Query: 124 NTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGW 183
+ LH A +L++ +N+ + NKE S ++A +
Sbjct: 123 KSALHWAAAVNNVDAAVVLLKNGANKDMQ-----NNKEETPLFLAAREGSYETAKVLLDH 177
Query: 184 IIQRAIAQQSPQLPAD 199
R I +LP D
Sbjct: 178 FANRDITDHMDRLPRD 193
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 17/132 (12%)
Query: 56 RAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHL 115
AA G D +R L++ + + G T LHLA + E L+ +
Sbjct: 20 EAARAGQDDEVRILMANGAD-VNANDRKGNTPLHLAADYDHLEIVEVLLKHGAD------ 72
Query: 116 FTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQD 175
D +G+T LHLA L +IVE+L++ ++ +N +K G+T + S D
Sbjct: 73 VNAHDNDGSTPLHLAALFGHLEIVEVLLKHGAD------VNAQDKFGKTAFDI----SID 122
Query: 176 SAFKEIGWIIQR 187
+ +++ I+Q+
Sbjct: 123 NGNEDLAEILQK 134
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 13 NQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSI 72
+++G T +HL + E V + + ++ DN PLH AAL G+ +++ L+
Sbjct: 44 DRKGNTPLHLAADYDHLEIVEVLLKHGADVNAH-DNDGSTPLHLAALFGHLEIVEVLLKH 102
Query: 73 CPESLEKLTSNGETALHLAVKKSRSDAFEAL 103
+ + G+TA +++ D E L
Sbjct: 103 GAD-VNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 54 LHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKE 113
L AA G D +R L++ + + L +G T LHLA + + E L+ + E
Sbjct: 18 LLEAARAGQDDEVRILMANGAD-VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAE 76
Query: 114 HLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANS 173
F G T LHLA + +IVE+L++ ++ +N +K G+T + S
Sbjct: 77 DNF------GITPLHLAAIRGHLEIVEVLLKHGAD------VNAQDKFGKTAFDI----S 120
Query: 174 QDSAFKEIGWIIQR 187
D+ +++ I+Q+
Sbjct: 121 IDNGNEDLAEILQK 134
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 14/126 (11%)
Query: 53 PLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRK 112
PLH AA G+ +++ L+ + + + G T LHLA + E L+ +
Sbjct: 50 PLHLAAYWGHLEIVEVLLKNGAD-VNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGAD--- 105
Query: 113 EHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLC-NA 171
KD G T LHLA +IVE+L++ ++ +N +K G+T + N
Sbjct: 106 ---VNAKDDNGITPLHLAANRGHLEIVEVLLKYGAD------VNAQDKFGKTAFDISINN 156
Query: 172 NSQDSA 177
++D A
Sbjct: 157 GNEDLA 162
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 11 IKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALV 70
+K++ G +H + G +T++ E ++ +E DN +PLH AA +G+ V+ LV
Sbjct: 65 LKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 71 SICPESLEKLTSNGETALHLAVKKSRSD 98
++ G+TA LA R++
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNE 151
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 84 GETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
G TALHLA SRSDA + L++ + + +D G T LH A + + ++LI
Sbjct: 57 GATALHLAAAYSRSDAAKRLLEASAD------ANIQDNMGRTPLHAAVSADAQGVFQILI 110
Query: 144 R 144
R
Sbjct: 111 R 111
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 11 IKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALV 70
+K++ G +H + G +T++ E ++ +E DN +PLH AA +G+ V+ LV
Sbjct: 65 LKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 71 SICPESLEKLTSNGETALHLAVKKSRSD 98
++ G+TA LA R++
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNE 151
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 64/160 (40%), Gaps = 42/160 (26%)
Query: 8 LASIKNQRGETTMHLLSTDGDAETVRIF---GEIN-----------------------RE 41
L K+ G T +HL + G E V+ G+++ +
Sbjct: 69 LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVK 128
Query: 42 LCLEV-------DNSSMIPLHRAALDGNSDVIRALVSI-CPESLEKLTSNGETALHLAVK 93
L L DN I LH AA G D+ L++ C L + +G++ LH+A +
Sbjct: 129 LLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKC--DLHAVNIHGDSPLHIAAR 186
Query: 94 KSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLN 133
++R D + ++ T K+KEG T L A+LN
Sbjct: 187 ENRYDCVVLFL------SRDSDVTLKNKEGETPLQCASLN 220
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 53 PLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRK 112
PLH AA G+ D+ LV +++ + + T L A + + +A + L+ +
Sbjct: 14 PLHAAAEAGHVDICHMLVQA-GANIDTCSEDQRTPLMEAAENNHLEAVKYLI------KA 66
Query: 113 EHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
L KD EG+T LHLA ++V+ L+
Sbjct: 67 GALVDPKDAEGSTCLHLAAKKGHYEVVQYLL 97
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 53 PLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRK 112
PL AA + + + ++ L+ ++ + G T LHLA KK + + L+ +
Sbjct: 47 PLMEAAENNHLEAVKYLIKA-GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD-- 103
Query: 113 EHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVN 159
+D G T + AT K +V+LL+ + S+ I IR N N
Sbjct: 104 ---VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD--INIRDNEEN 145
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 11/120 (9%)
Query: 26 DGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGE 85
+G+A VR++ + + D+ PLH A +G S V+ L+ + + + +
Sbjct: 15 EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI-MRGARINVMNRGDD 73
Query: 86 TALHLAVKKSRSDAFEALVDEAK--NHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
T LHLA D + L+ N EH GN LH A Q+ E L+
Sbjct: 74 TPLHLAASHGHRDIVQKLLQYKADINAVNEH--------GNVPLHYACFWGQDQVAEDLV 125
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 34.3 bits (77), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 11/120 (9%)
Query: 26 DGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGE 85
+G+A VR++ + + D+ PLH A +G S V+ L+ + + + +
Sbjct: 10 EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI-MRGARINVMNRGDD 68
Query: 86 TALHLAVKKSRSDAFEALVDEAK--NHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
T LHLA D + L+ N EH GN LH A Q+ E L+
Sbjct: 69 TPLHLAASHGHRDIVQKLLQYKADINAVNEH--------GNVPLHYACFWGQDQVAEDLV 120
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 34.3 bits (77), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 10/70 (14%)
Query: 119 KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAF 178
KDK+G T LHLA +IVE+L++ ++ +N +K G+T + S D+
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGAD------VNAQDKFGKTAFDI----SIDNGN 80
Query: 179 KEIGWIIQRA 188
+++ I+Q+A
Sbjct: 81 EDLAEILQKA 90
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 33.9 bits (76), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 17/127 (13%)
Query: 61 GNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKD 120
G D +R L++ + + + G T LHLA K+ + E L+ + +D
Sbjct: 25 GQDDEVRILMANGAD-VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD------VNARD 77
Query: 121 KEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKE 180
G T LHLA +IVE+L+ ++ +N +K G+T + S D+ ++
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGAD------VNAQDKFGKTAFDI----SIDNGNED 127
Query: 181 IGWIIQR 187
+ I+Q+
Sbjct: 128 LAEILQK 134
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 33.9 bits (76), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 11 IKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALV 70
+K++ G +H + G +T++ E ++ +E DN +PLH AA +G+ V+ LV
Sbjct: 65 LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 71 SICPESLEKLTSNGETALHLAVKKSRSD 98
++ G+TA LA R++
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNE 151
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 33.9 bits (76), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 11 IKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALV 70
+K++ G +H + G +T++ E ++ +E DN +PLH AA +G+ V+ LV
Sbjct: 65 LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 71 SICPESLEKLTSNGETALHLAVKKSRSD 98
++ G+TA LA R++
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNE 151
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 17/127 (13%)
Query: 61 GNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKD 120
G D +R L++ + + + G T LHLA K+ + E L+ + D
Sbjct: 25 GQDDEVRILMANGAD-VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD------VNASD 77
Query: 121 KEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKE 180
G T LHLA +IVE+L+ ++ +N +K G+T + S D+ ++
Sbjct: 78 SWGRTPLHLAATVGHLEIVEVLLEYGAD------VNAQDKFGKTAFDI----SIDNGNED 127
Query: 181 IGWIIQR 187
+ I+Q+
Sbjct: 128 LAEILQK 134
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 119 KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLC 169
+DK G T LHLA +N +IVE+L++ ++ +N ++ G+T L L
Sbjct: 43 EDKVGLTPLHLAAMNDHLEIVEVLLKNGAD------VNAIDAIGETPLHLV 87
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 16/104 (15%)
Query: 84 GETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
G T LHLA + E L+ + D G T LHL + +IVE+L+
Sbjct: 47 GLTPLHLAAMNDHLEIVEVLLKNGAD------VNAIDAIGETPLHLVAMYGHLEIVEVLL 100
Query: 144 RENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQR 187
+ ++ +N +K G+T + S D+ +++ I+Q+
Sbjct: 101 KHGAD------VNAQDKFGKTAFDI----SIDNGNEDLAEILQK 134
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 10/93 (10%)
Query: 53 PLHRAALDGNSDVIRALVS--ICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNH 110
PLH AA GN +R + + L+K G TAL+ A D E L +
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRVGVNGLDKA---GSTALYWACHGGHKDIVEXLFTQPNIE 132
Query: 111 RKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
+ ++K G+T LH A IV+LL+
Sbjct: 133 LNQ-----QNKLGDTALHAAAWKGYADIVQLLL 160
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 46 VDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVD 105
+D + L+ A G+ D++ L + L + G+TALH A K +D + L+
Sbjct: 102 LDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLL- 160
Query: 106 EAKNHRKE 113
AK R +
Sbjct: 161 -AKGARTD 167
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 47 DNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE 106
D S P+H AA G D ++ LV + + G +HLAV++ + L E
Sbjct: 65 DTSGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123
Query: 107 AKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELL 142
+ HR +D G T L LA + +V++L
Sbjct: 124 SDLHR-------RDARGLTPLELALQRGAQDLVDIL 152
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 47 DNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE 106
D S P+H AA G D ++ LV + + G +HLAV++ + L E
Sbjct: 71 DTSGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE 129
Query: 107 AKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELL 142
+ HR +D G T L LA + +V++L
Sbjct: 130 SDLHR-------RDARGLTPLELALQRGAQDLVDIL 158
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 29/176 (16%)
Query: 13 NQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSI 72
N G T +H D + + V+ E N + DN IPLH AA G D+ L+S
Sbjct: 70 NVDGLTALHQACIDDNVDMVKFLVE-NGANINQPDNEGWIPLHAAASCGYLDIAEYLISQ 128
Query: 73 CPESLEKLTSNGETALHLAVKKSRSDAFEALVD------EAKNHRKEHLF-----TWKD- 120
+ + S G+T L +A +++ + + V+ EA +E + W +
Sbjct: 129 GAH-VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNS 187
Query: 121 ---------KEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQ 167
K G T LH+A ++++LLI+ + +N + +G T L
Sbjct: 188 GHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD------VNIKDYDGWTPLH 237
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 11 IKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALV 70
+K++ G +H + G +T++ E ++ +E DN +PLH AA +G+ V+ LV
Sbjct: 65 LKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 71 SICPESLEKLTSNGETALHLAVKKSRSD 98
++ G+TA LA R++
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNE 151
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 10/68 (14%)
Query: 119 KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAF 178
KDK G+T LHLA N ++V+LL+ ++ +N +K G+T + S D+
Sbjct: 35 KDKNGSTPLHLAARNGHLEVVKLLLEAGAD------VNAQDKFGKTAFDI----SIDNGN 84
Query: 179 KEIGWIIQ 186
+++ I+Q
Sbjct: 85 EDLAEILQ 92
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 78/188 (41%), Gaps = 31/188 (16%)
Query: 10 SIKNQRGETTMHLLSTDGDAETVRIF-------GEINRELCLEVDNSSMIPLHRAALDGN 62
++ +Q G + +H+ + G A+ + + G N + +PLH A G+
Sbjct: 80 NVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNAD--------QAVPLHLACQQGH 131
Query: 63 SDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKE 122
V++ L+ + +K S G T L A + L+ + + +
Sbjct: 132 FQVVKCLLDSNAKPNKKDLS-GNTPLIYACSGGHHELVALLLQHGAS------INASNNK 184
Query: 123 GNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIG 182
GNT LH A + K +VELL+ ++ +++ NK +T + + Q+S E+
Sbjct: 185 GNTALHEAVIEKHVFVVELLLLHGASVQVL------NKRQRTAV---DCAEQNSKIMELL 235
Query: 183 WIIQRAIA 190
++ +A
Sbjct: 236 QVVPSCVA 243
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 85 ETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIR 144
E LHLAVK + + LVD + HL K +GNT LH A L ++LL++
Sbjct: 191 ELVLHLAVKVANQASL-PLVDFIIQNGG-HL-DAKAADGNTALHYAALYNQPDCLKLLLK 247
Query: 145 ENSNRRIMIRINTVNKEGQTTLQL 168
+ + TVN+ G+T L +
Sbjct: 248 GRA------LVGTVNEAGETALDI 265
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 13 NQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSI 72
N RGET +H+ S GD +V + + ++ D++ PLH A G+ V+ L+
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVK-DHAGWTPLHEACNHGHLKVVELLLQ- 64
Query: 73 CPESLEKLTS-NGETALHLAVKKSRSDAFEALV 104
++L T ++ LH A K D + L+
Sbjct: 65 -HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLL 96
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 53 PLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRK 112
PLH AA G+ L+ S + T T LH+A + ++ E L+ +
Sbjct: 37 PLHLAAQYGHFSTTEVLLR-AGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD--- 92
Query: 113 EHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSN 148
KD T LH AT + +++VELLI+ ++
Sbjct: 93 ---VNAKDMLKMTALHWATEHNHQEVVELLIKYGAD 125
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 85 ETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIR 144
E LHLAVK + + LVD + HL K +GNT LH A L ++LL++
Sbjct: 172 ELVLHLAVKVANQASL-PLVDFIIQN-GGHLDA-KAADGNTALHYAALYNQPDCLKLLLK 228
Query: 145 ENSNRRIMIRINTVNKEGQTTLQL 168
+ + TVN+ G+T L +
Sbjct: 229 GRA------LVGTVNEAGETALDI 246
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Query: 79 KLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQI 138
K + G+TAL LAV R D +AL+ E +D +G+T L A + K+I
Sbjct: 178 KASQAGQTALMLAVSHGRVDVVKALL------ACEADVNVQDDDGSTALMCACEHGHKEI 231
Query: 139 VELLIRENSNRRIMIRINTVNKEGQTTLQL 168
LL+ S I+ +++G T L +
Sbjct: 232 AGLLLAVPS-----CDISLTDRDGSTALMV 256
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Query: 80 LTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIV 139
+T +G+TALHLAV + L+ + H E+L D G T LHLA + V
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGH--EYLDLQNDL-GQTALHLAAILGEASTV 61
Query: 140 ELLIRENSNRRIMIRINTVNKEGQTTLQL 168
E L + + + G T L L
Sbjct: 62 EKLYAAGAG------VLVAERGGHTALHL 84
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 77 LEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLK 136
LE +G T LH+AV ++ L D + K + G T LHLA +
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP-----EPTCGRTPLHLAVEAQAA 205
Query: 137 QIVELLIRENSN 148
++ELL++ ++
Sbjct: 206 SVLELLLKAGAD 217
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Query: 80 LTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIV 139
+T +G+TALHLAV + L+ + H E+L D G T LHLA + V
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGH--EYLDLQNDL-GQTALHLAAILGEASTV 61
Query: 140 ELLIRENSNRRIMIRINTVNKEGQTTLQL 168
E L + + + G T L L
Sbjct: 62 EKLYAAGAG------VLVAERGGHTALHL 84
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 77 LEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLK 136
LE +G T LH+AV ++ L D + K + G T LHLA +
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP-----EPTCGRTPLHLAVEAQAA 205
Query: 137 QIVELLIRENSN 148
++ELL++ ++
Sbjct: 206 SVLELLLKAGAD 217
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 84 GETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
G TALH A + S + LV E +++ + +D++G T + LA ++V LI
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDK-----QDEDGKTPIXLAAQEGRIEVVXYLI 333
Query: 144 RENSNRRIMIRINTVNKEGQTTLQLCNANSQ 174
++ ++ + V+ T QL AN+
Sbjct: 334 QQGAS------VEAVDATDHTARQLAQANNH 358
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 54 LHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKE 113
LH AA N +++ LV + +K +G+T + LA ++ R + L+ + +
Sbjct: 283 LHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGAS---- 338
Query: 114 HLFTWKDKEGNTVLHLATLNKLKQIVELLIR 144
D +T LA N IV++ R
Sbjct: 339 --VEAVDATDHTARQLAQANNHHNIVDIFDR 367
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 19/138 (13%)
Query: 47 DNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSN---GETALHLAVKKSRSDAFEAL 103
D+ + PL A + G + I LV E+ +KL G TAL AVK +R E L
Sbjct: 32 DSYNRTPLMVACMLGMENAIDKLV----ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKL 87
Query: 104 VDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQ 163
+ + N KD G T L + + ++ L+ +N +N N EG+
Sbjct: 88 LSKGSN------VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGAN------VNDRNLEGE 135
Query: 164 TTLQLCNANSQDSAFKEI 181
T L + + + K++
Sbjct: 136 TPLIVASKYGRSEIVKKL 153
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 10/68 (14%)
Query: 119 KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAF 178
KDK G+T LHLA N ++V+LL+ ++ + +K G+T + S D+
Sbjct: 53 KDKNGSTPLHLAARNGHLEVVKLLLEAGAD------VXAQDKFGKTAFDI----SIDNGN 102
Query: 179 KEIGWIIQ 186
+++ I+Q
Sbjct: 103 EDLAEILQ 110
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 15/87 (17%)
Query: 85 ETALHLAVK---KSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVEL 141
ETALHLAV+ ++ + LV + N K+ +G+T LH L + ++L
Sbjct: 170 ETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ------TGKGSTALHYCCLTDNAECLKL 223
Query: 142 LIRENSNRRIMIRINTVNKEGQTTLQL 168
L+R ++ I N+ G+T L +
Sbjct: 224 LLRGKAS------IEIANESGETPLDI 244
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
Length = 1052
Score = 29.3 bits (64), Expect = 2.2, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Query: 44 LEVDNSSMIPLHRAALDGNSDVIRALV-SICPESLEKLTSNGETALHLAVK----KSRSD 98
L + S + +HR D +IR ++C E+ + + N + ALH++++ +SR
Sbjct: 557 LSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNND-ALHMSLESLICESRDK 615
Query: 99 AFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
L + + N+ K+ K K G ++ NK K + LL+
Sbjct: 616 FIRELFESSTNNNKDT----KQKAGKLSF-ISVGNKFKTQLNLLL 655
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 788
Score = 28.9 bits (63), Expect = 2.7, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Query: 44 LEVDNSSMIPLHRAALDGNSDVIRALV-SICPESLEKLTSNGETALHLAVK----KSRSD 98
L + S + +HR D +IR ++C E+ + + N + ALH++++ +SR
Sbjct: 530 LSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNND-ALHMSLESLICESRDK 588
Query: 99 AFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
L + + N+ K+ K K G ++ NK K + LL+
Sbjct: 589 FIRELFESSTNNNKDT----KQKAGKLSF-ISVGNKFKTQLNLLL 628
>pdb|2X51|A Chain A, M6 Delta Insert1
Length = 789
Score = 28.9 bits (63), Expect = 2.7, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Query: 44 LEVDNSSMIPLHRAALDGNSDVIRALV-SICPESLEKLTSNGETALHLAVK----KSRSD 98
L + S + +HR D +IR ++C E+ + + N + ALH++++ +SR
Sbjct: 531 LSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNND-ALHMSLESLICESRDK 589
Query: 99 AFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
L + + N+ K+ K K G ++ NK K + LL+
Sbjct: 590 FIRELFESSTNNNKDT----KQKAGKLSF-ISVGNKFKTQLNLLL 629
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|2VB6|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 788
Score = 28.9 bits (63), Expect = 2.7, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Query: 44 LEVDNSSMIPLHRAALDGNSDVIRALV-SICPESLEKLTSNGETALHLAVK----KSRSD 98
L + S + +HR D +IR ++C E+ + + N + ALH++++ +SR
Sbjct: 530 LSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNND-ALHMSLESLICESRDK 588
Query: 99 AFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
L + + N+ K+ K K G ++ NK K + LL+
Sbjct: 589 FIRELFESSTNNNKDT----KQKAGKLSF-ISVGNKFKTQLNLLL 628
>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4)
Length = 784
Score = 28.9 bits (63), Expect = 2.7, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Query: 44 LEVDNSSMIPLHRAALDGNSDVIRALV-SICPESLEKLTSNGETALHLAVK----KSRSD 98
L + S + +HR D +IR ++C E+ + + N + ALH++++ +SR
Sbjct: 553 LSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNND-ALHMSLESLICESRDK 611
Query: 99 AFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
L + + N+ K+ K K G ++ NK K + LL+
Sbjct: 612 FIRELFESSTNNNKDT----KQKAGKLSF-ISVGNKFKTQLNLLL 651
>pdb|1LWD|A Chain A, Crystal Structure Of Nadp-Dependent Isocitrate
Dehydrogenase From Porcine Heart Mitochondria
pdb|1LWD|B Chain B, Crystal Structure Of Nadp-Dependent Isocitrate
Dehydrogenase From Porcine Heart Mitochondria
Length = 413
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 55 HRAALDGNSDVIR---ALVSICPESLE 78
HR LDGN D+IR L +C E++E
Sbjct: 342 HRGKLDGNQDLIRFAQTLEKVCVETVE 368
>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
pdb|4E7Z|B Chain B, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
Length = 798
Score = 28.9 bits (63), Expect = 2.7, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Query: 44 LEVDNSSMIPLHRAALDGNSDVIRALV-SICPESLEKLTSNGETALHLAVK----KSRSD 98
L + S + +HR D +IR ++C E+ + + N + ALH++++ +SR
Sbjct: 566 LSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNND-ALHMSLESLICESRDK 624
Query: 99 AFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
L + + N+ K+ K K G ++ NK K + LL+
Sbjct: 625 FIRELFESSTNNNKDT----KQKAGKLSF-ISVGNKFKTQLNLLL 664
>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State
Length = 786
Score = 28.9 bits (63), Expect = 2.7, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Query: 44 LEVDNSSMIPLHRAALDGNSDVIRALV-SICPESLEKLTSNGETALHLAVK----KSRSD 98
L + S + +HR D +IR ++C E+ + + N + ALH++++ +SR
Sbjct: 554 LSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNND-ALHMSLESLICESRDK 612
Query: 99 AFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
L + + N+ K+ K K G ++ NK K + LL+
Sbjct: 613 FIRELFESSTNNNKDT----KQKAGKLSF-ISVGNKFKTQLNLLL 652
>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
Length = 814
Score = 28.9 bits (63), Expect = 2.7, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Query: 44 LEVDNSSMIPLHRAALDGNSDVIRALV-SICPESLEKLTSNGETALHLAVK----KSRSD 98
L + S + +HR D +IR ++C E+ + + N + ALH++++ +SR
Sbjct: 556 LSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNND-ALHMSLESLICESRDK 614
Query: 99 AFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
L + + N+ K+ K K G ++ NK K + LL+
Sbjct: 615 FIRELFESSTNNNKDT----KQKAGKLSF-ISVGNKFKTQLNLLL 654
>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
Length = 814
Score = 28.9 bits (63), Expect = 2.7, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Query: 44 LEVDNSSMIPLHRAALDGNSDVIRALV-SICPESLEKLTSNGETALHLAVK----KSRSD 98
L + S + +HR D +IR ++C E+ + + N + ALH++++ +SR
Sbjct: 556 LSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNND-ALHMSLESLICESRDK 614
Query: 99 AFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
L + + N+ K+ K K G ++ NK K + LL+
Sbjct: 615 FIRELFESSTNNNKDT----KQKAGKLSF-ISVGNKFKTQLNLLL 654
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 54/149 (36%), Gaps = 13/149 (8%)
Query: 27 GDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGET 86
GD ETV+ + C +++ PLH AA V+ L+ + K G
Sbjct: 19 GDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK-DKGGLV 77
Query: 87 ALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIREN 146
LH A + E LV L+ + T LH A +I +LL++
Sbjct: 78 PLHNACSYGHYEVAELLVKHGAVVNVADLWKF------TPLHEAAAKGKYEICKLLLQHG 131
Query: 147 SNRRIMIRINTVNKEGQTTLQLCNANSQD 175
++ N++G T L L D
Sbjct: 132 ADP------TKKNRDGNTPLDLVKDGDTD 154
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 54/149 (36%), Gaps = 13/149 (8%)
Query: 27 GDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGET 86
GD ETV+ + C +++ PLH AA V+ L+ + K G
Sbjct: 23 GDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK-DKGGLV 81
Query: 87 ALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIREN 146
LH A + E LV L+ + T LH A +I +LL++
Sbjct: 82 PLHNACSYGHYEVAELLVKHGAVVNVADLWKF------TPLHEAAAKGKYEICKLLLQHG 135
Query: 147 SNRRIMIRINTVNKEGQTTLQLCNANSQD 175
++ N++G T L L D
Sbjct: 136 ADP------TKKNRDGNTPLDLVKDGDTD 158
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 120 DKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLC 169
D G T LH+A +IVE+L+R ++ +N V+ G T L L
Sbjct: 32 DHYGRTPLHMAAAVGHLEIVEVLLRNGAD------VNAVDTNGTTPLHLA 75
>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
Length = 814
Score = 28.9 bits (63), Expect = 2.8, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Query: 44 LEVDNSSMIPLHRAALDGNSDVIRALV-SICPESLEKLTSNGETALHLAVK----KSRSD 98
L + S + +HR D +IR ++C E+ + + N + ALH++++ +SR
Sbjct: 556 LSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNND-ALHMSLESLICESRDK 614
Query: 99 AFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
L + + N+ K+ K K G ++ NK K + LL+
Sbjct: 615 FIRELFESSTNNNKDT----KQKAGKLSF-ISVGNKFKTQLNLLL 654
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 54/149 (36%), Gaps = 13/149 (8%)
Query: 27 GDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGET 86
GD ETV+ + C +++ PLH AA V+ L+ + K G
Sbjct: 21 GDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK-DKGGLV 79
Query: 87 ALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIREN 146
LH A + E LV L+ + T LH A +I +LL++
Sbjct: 80 PLHNACSYGHYEVAELLVKHGAVVNVADLWKF------TPLHEAAAKGKYEICKLLLQHG 133
Query: 147 SNRRIMIRINTVNKEGQTTLQLCNANSQD 175
++ N++G T L L D
Sbjct: 134 ADP------TKKNRDGNTPLDLVKDGDTD 156
>pdb|2OCW|A Chain A, Solution Structure Of Human Secretory Component
pdb|3CHN|S Chain S, Solution Structure Of Human Secretory Iga1
pdb|3CM9|S Chain S, Solution Structure Of Human Siga2
Length = 585
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 111 RKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNK-----EGQTT 165
+ E ++D G+ H A ++ + + L R++S + +NT+ K EG+
Sbjct: 221 KPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRIL 280
Query: 166 LQLCNANSQDSAF 178
L N +D +F
Sbjct: 281 L---NPQDKDGSF 290
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 11 IKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALV 70
+++ G + +H + G +T+++ E ++ +D++ +P+H A +G+S V+ L
Sbjct: 69 VQDASGTSPVHDAARTGFLDTLKVLVEHGADVN-ALDSTGSLPIHLAIREGHSSVVSFL- 126
Query: 71 SICPES-LEKLTSNGETALHLAVKKSRSDAFEAL 103
PES L ++G T L LA ++ + + L
Sbjct: 127 --APESDLHHRDASGLTPLELARQRGAQNLMDIL 158
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 15/103 (14%)
Query: 61 GNSDVIRALVSICPESLEKLT-------SNGETALH---LAVKKSRSDAFEALVDEAK-- 108
G+ D + L+S ++LT S G+T L L + R+D L+D A+
Sbjct: 16 GSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKT 75
Query: 109 -NHRKEHLFTWKD--KEGNTVLHLATLNKLKQIVELLIRENSN 148
N R+ ++D G T LH+A + K VELL+ + ++
Sbjct: 76 GNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD 118
>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
Length = 858
Score = 28.9 bits (63), Expect = 3.1, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Query: 44 LEVDNSSMIPLHRAALDGNSDVIRALV-SICPESLEKLTSNGETALHLAVK----KSRSD 98
L + S + +HR D +IR ++C E+ + + N + ALH++++ +SR
Sbjct: 557 LSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNND-ALHMSLESLICESRDK 615
Query: 99 AFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
L + + N+ K+ K K G ++ NK K + LL+
Sbjct: 616 FIRELFESSTNNNKDT----KQKAGKLSF-ISVGNKFKTQLNLLL 655
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 11 IKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALV 70
+++ G + +H + G +T+++ E ++ +D++ +P+H A +G+S V+ L
Sbjct: 71 VQDASGTSPVHDAARTGFLDTLKVLVEHGADVN-ALDSTGSLPIHLAIREGHSSVVSFL- 128
Query: 71 SICPES-LEKLTSNGETALHLAVKKSRSDAFEAL 103
PES L ++G T L LA ++ + + L
Sbjct: 129 --APESDLHHRDASGLTPLELARQRGAQNLMDIL 160
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 119 KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLC 169
KD+ G T L+LAT + +IVE+L++ ++ +N V+ G T L L
Sbjct: 43 KDEYGLTPLYLATAHGHLEIVEVLLKNGAD------VNAVDAIGFTPLHLA 87
>pdb|3HGT|A Chain A, Structural And Functional Studies Of The Yeast Class Ii
Hda1 Hdac Complex
pdb|3HGT|B Chain B, Structural And Functional Studies Of The Yeast Class Ii
Hda1 Hdac Complex
Length = 328
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 56/136 (41%), Gaps = 20/136 (14%)
Query: 52 IPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRS-DAFEALVDEAKNH 110
+P H A G V+R L+++ E ET + + R+ D EAL+ K H
Sbjct: 100 VPAHLAENSGKFSVLRDLINLVQEY--------ETETAIVCRPGRTMDLLEALLLGNKVH 151
Query: 111 RKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCN 170
K + +G+++ A N V L E N + + + + +C
Sbjct: 152 IKRY-------DGHSIKSAAAANDFSCTVHLFSSEGIN----FTKYPIKSKARFDMLICL 200
Query: 171 ANSQDSAFKEIGWIIQ 186
+ D++ K+I +++Q
Sbjct: 201 DTTVDTSQKDIQYLLQ 216
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 84 GETALHLAVKKSRSDAFEALVDEAKNHRKEHL-FTWKDKEGNTVLHLATLNKLKQIVELL 142
G+T L LAV+K + L+++ EH+ D +G T L LA KLK+I ELL
Sbjct: 219 GKTPLILAVEKKHLGLVQRLLEQ------EHIEINDTDSDGKTALLLAVELKLKKIAELL 272
Query: 143 IRENSN 148
+ ++
Sbjct: 273 CKRGAS 278
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 84 GETALHLAVKKSRSDAFEALVDEAKNHRKEHL-FTWKDKEGNTVLHLATLNKLKQIVELL 142
G+T L LAV+K + L+++ EH+ D +G T L LA KLK+I ELL
Sbjct: 239 GKTPLILAVEKKHLGLVQRLLEQ------EHIEINDTDSDGKTALLLAVELKLKKIAELL 292
Query: 143 IRENSN 148
+ ++
Sbjct: 293 CKRGAS 298
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 16/104 (15%)
Query: 84 GETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
G T LHLA + E L+ + G T LHLA +IVE+L+
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGAD------VNATGNTGRTPLHLAAWADHLEIVEVLL 100
Query: 144 RENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQR 187
+ ++ +N +K G+T + S D+ +++ I+Q+
Sbjct: 101 KHGAD------VNAQDKFGKTAFDI----SIDNGNEDLAEILQK 134
Score = 26.9 bits (58), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 120 DKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLC 169
D G+T LHLA + +IVE+L++ ++ +N G+T L L
Sbjct: 44 DYWGHTPLHLAAMLGHLEIVEVLLKNGAD------VNATGNTGRTPLHLA 87
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 5 WPQLASIK-NQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNS 63
+P+L IK + +H+ + G + VR E ++ + LH A G
Sbjct: 8 FPKLNRIKSDDENXEKIHVAARKGQTDEVRRLIETGVSPTIQ-NRFGCTALHLACKFGCV 66
Query: 64 DVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAK 108
D + L S+ + L +G+ +HLAV +++D ALV+ AK
Sbjct: 67 DTAKYLASV--GEVHSLW-HGQKPIHLAVXANKTDLVVALVEGAK 108
>pdb|3S28|A Chain A, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|B Chain B, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|C Chain C, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|D Chain D, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|E Chain E, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|F Chain F, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|G Chain G, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|H Chain H, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S29|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 27.3 bits (59), Expect = 7.7, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 92 VKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRI 151
+ K S+ E L + +N KEHL KDK+ + +A L+++K + L+ N R+
Sbjct: 543 LTKFHSEIEELLYSDVEN--KEHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRL 600
Query: 152 MIRINTV 158
N V
Sbjct: 601 RELANLV 607
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 82 SNGETALH---LAVKKSRSDAFEALVDEAK---NHRKEHLFTWKD--KEGNTVLHLATLN 133
S G+T L L + R+D L+D A+ N R+ ++D G T LH+A
Sbjct: 42 STGKTCLPKALLNLSNGRNDTIPVLLDIAERTGNMREFINSPFRDIYYRGQTALHIAIER 101
Query: 134 KLKQIVELLIRENSN 148
+ K VELL+ + ++
Sbjct: 102 RCKHYVELLVAQGAD 116
>pdb|2OD5|A Chain A, Crystal Structure Of A Putative Nucleic Acid Binding
Protein (Jcvi_pep_1096688149193) From Uncultured Marine
Organism At 1.79 A Resolution
Length = 116
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 144 RENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAI 189
R + I+ IN+ + G T+ QL N S+D ++G+I + I
Sbjct: 27 RPRNTAEILEHINSTXRHGTTSQQLGNVLSKDKDIVKVGYIKRSGI 72
>pdb|2QLC|A Chain A, The Crystal Structure Of Dna Repair Protein Radc From
Chlorobium Tepidum Tls
pdb|2QLC|B Chain B, The Crystal Structure Of Dna Repair Protein Radc From
Chlorobium Tepidum Tls
pdb|2QLC|C Chain C, The Crystal Structure Of Dna Repair Protein Radc From
Chlorobium Tepidum Tls
pdb|2QLC|D Chain D, The Crystal Structure Of Dna Repair Protein Radc From
Chlorobium Tepidum Tls
pdb|2QLC|E Chain E, The Crystal Structure Of Dna Repair Protein Radc From
Chlorobium Tepidum Tls
pdb|2QLC|F Chain F, The Crystal Structure Of Dna Repair Protein Radc From
Chlorobium Tepidum Tls
pdb|2QLC|G Chain G, The Crystal Structure Of Dna Repair Protein Radc From
Chlorobium Tepidum Tls
pdb|2QLC|H Chain H, The Crystal Structure Of Dna Repair Protein Radc From
Chlorobium Tepidum Tls
Length = 126
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 16/109 (14%)
Query: 88 LHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLH---------LATLNKLKQI 138
++L VK +R D FE + + KEHLF N +L A+L ++I
Sbjct: 1 MNLKVKGAR-DVFEYMKGRIPDETKEHLFVLFLSTKNQILRHETITIGTLTASLIHPREI 59
Query: 139 VELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQ-DSAFKEIGWIIQ 186
+ IRE+++ I+ V+ +Q NA+ Q S K+ G ++Q
Sbjct: 60 FKAAIRESAHSIIL-----VHNHPSGDVQPSNADKQVTSILKKAGDLLQ 103
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.130 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,510,370
Number of Sequences: 62578
Number of extensions: 234584
Number of successful extensions: 1313
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 1044
Number of HSP's gapped (non-prelim): 229
length of query: 252
length of database: 14,973,337
effective HSP length: 97
effective length of query: 155
effective length of database: 8,903,271
effective search space: 1380007005
effective search space used: 1380007005
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)