BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025506
(252 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93VG8|PPDEX_ARATH DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486
PE=2 SV=1
Length = 224
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 48 EWSFGFCEQ-GSGVFSCPSGRNPMYTYRESIVLGKTNFSIFKVNQILRELSREWPGNSYD 106
E+ +G E SGV+ P + +R S++LG T+ S + +LSR++ G++Y
Sbjct: 60 EYCYGAHEYPTSGVYEVEPRNCPGFIFRRSVLLGTTSMSRSDFRSYMEKLSRKYHGDTYH 119
Query: 107 LLGRNCNHFCDEFCDRLGVPKLPGWVNRFANAG 139
L+ +NCNHF +E C +L +PGW+NR A G
Sbjct: 120 LIAKNCNHFTEEVCLQLTGKPIPGWINRLARVG 152
>sp|Q5PQ09|DESI2_XENLA Desumoylating isopeptidase 2 OS=Xenopus laevis GN=desi2 PE=2 SV=1
Length = 192
Score = 70.9 bits (172), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 64/129 (49%), Gaps = 8/129 (6%)
Query: 16 NCSIVFRYFSPYGLN----CRGINSLSFTPQVYGDEEWSFGFCEQGSGVFSCPSGRN--- 68
N I+ + Y +N GI QVYG E G SGVF G +
Sbjct: 3 NQPIILNVYDMYWINEYTSSLGIGVFHSGIQVYGREFAYGGHPYPFSGVFEISPGDSTEL 62
Query: 69 -PMYTYRESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPK 127
+ ++E+I LG T+F+ + +I+ EL +E+ GN+Y L+ +NCNHF + L +
Sbjct: 63 GDTFKFKEAIALGSTDFTENDIEKIIEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKE 122
Query: 128 LPGWVNRFA 136
+P WVNR A
Sbjct: 123 IPRWVNRLA 131
>sp|Q5ZIV7|DESI2_CHICK Desumoylating isopeptidase 2 OS=Gallus gallus GN=DESI2 PE=2 SV=1
Length = 193
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 8/129 (6%)
Query: 16 NCSIVFRYFSPYGLN----CRGINSLSFTPQVYGDEEWSFGFCEQGSGVFSCPSGR---- 67
N ++ + Y +N GI +VYG E G SG+F G
Sbjct: 3 NQLVILNVYDMYWMNEYTSSLGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASEL 62
Query: 68 NPMYTYRESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPK 127
+ ++E++VLG T+F + +I+ EL +E+ GN+Y L+ +NCNHF + L +
Sbjct: 63 GETFKFKEAVVLGSTDFMEDDIEKIVEELGKEFKGNAYHLMHKNCNHFSSALSEILCGKE 122
Query: 128 LPGWVNRFA 136
+P WVNR A
Sbjct: 123 IPRWVNRLA 131
>sp|Q5XIT6|DESI2_RAT Desumoylating isopeptidase 2 OS=Rattus norvegicus GN=Desi2 PE=2
SV=1
Length = 194
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 8/129 (6%)
Query: 16 NCSIVFRYFSPYGLN----CRGINSLSFTPQVYGDEEWSFGFCEQGSGVFSCPSGR---- 67
N +V + Y +N GI +VYG E G SG+F G
Sbjct: 4 NQLVVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNAAEL 63
Query: 68 NPMYTYRESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPK 127
+ ++E++VLG T+F + +I+ EL +E+ GN+Y L+ +NCNHF + L +
Sbjct: 64 GETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKE 123
Query: 128 LPGWVNRFA 136
+P W+NR A
Sbjct: 124 IPRWINRLA 132
>sp|Q9D291|DESI2_MOUSE Desumoylating isopeptidase 2 OS=Mus musculus GN=Desi2 PE=2 SV=1
Length = 194
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 8/129 (6%)
Query: 16 NCSIVFRYFSPYGLN----CRGINSLSFTPQVYGDEEWSFGFCEQGSGVFSCPSGR---- 67
N +V + Y +N GI +VYG E G SG+F G
Sbjct: 4 NQLVVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASEL 63
Query: 68 NPMYTYRESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPK 127
+ ++E++VLG T+F + +I+ EL +E+ GN+Y L+ +NCNHF + L +
Sbjct: 64 GETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKE 123
Query: 128 LPGWVNRFA 136
+P W+NR A
Sbjct: 124 IPRWINRLA 132
>sp|Q6DC39|DESI2_DANRE Desumoylating isopeptidase 2 OS=Danio rerio GN=desi2 PE=2 SV=1
Length = 196
Score = 67.4 bits (163), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 8/129 (6%)
Query: 16 NCSIVFRYFSPYGLN----CRGINSLSFTPQVYGDEEWSFGFCEQGSGVFSCPSGR---- 67
N ++ + Y +N GI ++YG E G SG+F G
Sbjct: 3 NEPVILNVYDMYWINEFTSSLGIGVFHSGIEIYGREFAYGGHPYPFSGIFEITPGDATEL 62
Query: 68 NPMYTYRESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPK 127
+ ++E+IVLG T+F+ V +I+ E+ +E+ GN+Y L+ +NCNHF + L +
Sbjct: 63 GETFKFKEAIVLGSTDFTEEDVERIVEEMGKEYKGNAYHLMHKNCNHFSSALSEILCGRE 122
Query: 128 LPGWVNRFA 136
+P WVNR A
Sbjct: 123 IPRWVNRLA 131
>sp|Q5R456|DESI2_PONAB Desumoylating isopeptidase 2 OS=Pongo abelii GN=DESI2 PE=2 SV=1
Length = 194
Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 8/129 (6%)
Query: 16 NCSIVFRYFSPYGLN----CRGINSLSFTPQVYGDEEWSFGFCEQGSGVFSCPSGR---- 67
N +V + Y +N GI +VYG E G SG+F G
Sbjct: 4 NQLVVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASEL 63
Query: 68 NPMYTYRESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPK 127
+ ++E++VLG T+F + +I+ EL +E+ GN+Y L+ +NCNHF + L +
Sbjct: 64 GETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKE 123
Query: 128 LPGWVNRFA 136
+P W+NR A
Sbjct: 124 IPRWINRLA 132
>sp|Q9BSY9|DESI2_HUMAN Desumoylating isopeptidase 2 OS=Homo sapiens GN=DESI2 PE=1 SV=1
Length = 194
Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 8/129 (6%)
Query: 16 NCSIVFRYFSPYGLN----CRGINSLSFTPQVYGDEEWSFGFCEQGSGVFSCPSGR---- 67
N +V + Y +N GI +VYG E G SG+F G
Sbjct: 4 NQLVVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASEL 63
Query: 68 NPMYTYRESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPK 127
+ ++E++VLG T+F + +I+ EL +E+ GN+Y L+ +NCNHF + L +
Sbjct: 64 GETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKE 123
Query: 128 LPGWVNRFA 136
+P W+NR A
Sbjct: 124 IPRWINRLA 132
>sp|A3QRX8|DESI2_PIG Desumoylating isopeptidase 2 OS=Sus scrofa GN=DESI2 PE=2 SV=1
Length = 194
Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 8/129 (6%)
Query: 16 NCSIVFRYFSPYGLN----CRGINSLSFTPQVYGDEEWSFGFCEQGSGVFSCPSGR---- 67
N +V + Y +N GI +VYG E G SG+F G
Sbjct: 4 NQLVVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASEL 63
Query: 68 NPMYTYRESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPK 127
+ ++E++VLG T+F + +I+ EL +E+ GN+Y L+ +NCNHF + L +
Sbjct: 64 GETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKE 123
Query: 128 LPGWVNRFA 136
+P W+NR A
Sbjct: 124 IPRWINRLA 132
>sp|Q8X1T0|HAG1_SCHPO DeSI-like protein hag1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=hag1 PE=1 SV=1
Length = 201
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 5/103 (4%)
Query: 43 VYGDEEWSFGFCEQ--GSGVFSCPSGRNPMY--TYRESIVLGKTNFSIFKVNQILRELSR 98
V +E++FG E +GVF+ R P+ +R SI L V++IL LS+
Sbjct: 33 VLEGKEYAFGAHEIPGSTGVFAT-MPRPPLEGCRWRCSIALPNCTLPKPDVDRILIRLSQ 91
Query: 99 EWPGNSYDLLGRNCNHFCDEFCDRLGVPKLPGWVNRFANAGDA 141
E+ G SY LL RNCNHF + L +P ++NR + G A
Sbjct: 92 EFTGLSYSLLERNCNHFTNAAAIELTGSPIPSFLNRISRIGLA 134
>sp|Q54QD1|PKS23_DICDI Probable polyketide synthase 23 OS=Dictyostelium discoideum
GN=pks23 PE=3 SV=1
Length = 2499
Score = 35.8 bits (81), Expect = 0.28, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 69/175 (39%), Gaps = 30/175 (17%)
Query: 62 SCPSGRNPMYTYRESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCD 121
+C S N ++ ESIV GK+N+S+ IL +S ++ G++
Sbjct: 176 ACSSSLNAVHLGYESIVNGKSNYSVVAGCNILLNPYITRSFHSINITGKS---------- 225
Query: 122 RLGVPKLPGWVNRFANAGDAAMEVAGTTALRLRQAKTEIVSASKVAYRFLAGVASNVNGT 181
G N F + D + G L L++ I ++ Y + G +SNV+GT
Sbjct: 226 --------GRCNSFDESADGFVRSEGVVVLILKRLSLAIQDGDQI-YCVMKGSSSNVDGT 276
Query: 182 NGANGTNGAVPDSPSN---------SNRGTPRFQGTWFKNLITTGAKPSSSSDIE 227
TN P + S+ G ++Q F L +TG + ++E
Sbjct: 277 --FKKTNFFAPSKNAQSTNIKNAFLSSNGAMKYQDIDFFELHSTGTQVGDPIEVE 329
>sp|Q54QD3|PKS22_DICDI Probable polyketide synthase 22 OS=Dictyostelium discoideum
GN=pks22 PE=3 SV=1
Length = 2499
Score = 35.8 bits (81), Expect = 0.28, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 69/175 (39%), Gaps = 30/175 (17%)
Query: 62 SCPSGRNPMYTYRESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCD 121
+C S N ++ ESIV GK+N+S+ IL +S ++ G++
Sbjct: 176 ACSSSLNAVHLGYESIVNGKSNYSVVAGCNILLNPYITRSFHSINITGKS---------- 225
Query: 122 RLGVPKLPGWVNRFANAGDAAMEVAGTTALRLRQAKTEIVSASKVAYRFLAGVASNVNGT 181
G N F + D + G L L++ I ++ Y + G +SNV+GT
Sbjct: 226 --------GRCNSFDESADGFVRSEGVVVLILKRLSLAIQDGDQI-YCVMKGSSSNVDGT 276
Query: 182 NGANGTNGAVPDSPSN---------SNRGTPRFQGTWFKNLITTGAKPSSSSDIE 227
TN P + S+ G ++Q F L +TG + ++E
Sbjct: 277 --FKKTNFFAPSKNAQSTNIKNAFLSSNGAMKYQDIDFFELHSTGTQVGDPIEVE 329
>sp|Q6GLM5|DESI1_XENLA Desumoylating isopeptidase 1 OS=Xenopus laevis GN=desi1 PE=2 SV=1
Length = 169
Score = 35.8 bits (81), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 6/115 (5%)
Query: 22 RYFSPYGLNCRGINSLSFTPQVYGDEEWSFGFCEQGSGVFSCPSGRNPMYTYRESIVLGK 81
R SP L + + + T + DEE+ +G G+ SC GR + + LG
Sbjct: 23 RRLSPVMLG-KQLEGIWHTSIIVFDEEFFYG----REGITSCLPGRTMLGEPDSVMELGI 77
Query: 82 TNFSIFKVNQILRELSRE-WPGNSYDLLGRNCNHFCDEFCDRLGVPKLPGWVNRF 135
T + + L L + G SY L NCN F +E L K+P ++
Sbjct: 78 TEVTEEIFLEYLSSLGESGFSGESYHLFDHNCNTFSNEVAQFLTGKKIPSYITEL 132
>sp|Q55DM7|PKS2_DICDI Probable polyketide synthase 2 OS=Dictyostelium discoideum GN=pks2
PE=3 SV=1
Length = 3010
Score = 35.4 bits (80), Expect = 0.42, Method: Composition-based stats.
Identities = 41/149 (27%), Positives = 60/149 (40%), Gaps = 25/149 (16%)
Query: 62 SCPSGRNPMYTYRESIVLGKTNFSIF-KVNQILR-ELSREWPGNSYDLLGRNCNHFCDEF 119
+C S N ++ ESIV GK+++SI VN I+ + SR + Y +
Sbjct: 173 ACSSSLNAVHLGYESIVNGKSDYSIVGGVNFIINPQQSRAF---KYAM------------ 217
Query: 120 CDRLGVPKLPGWVNRFANAGDAAMEVAGTTALRLRQAKTEIVSASKVAYRFLAGVASNVN 179
V G F + D + G L L+ I +++ Y + G +SNV+
Sbjct: 218 -----VTSKTGKCKAFDESADGFVRSEGAVVLILKSLSKSIEDGNQI-YSIIKGSSSNVD 271
Query: 180 GTNGANGTNGAVPDSPSNSNRGTPRFQGT 208
GT N TN P S SN F T
Sbjct: 272 GT--LNKTNYFAPSKVSQSNNMQKAFDST 298
>sp|A5N1D3|THIM_CLOK5 Hydroxyethylthiazole kinase OS=Clostridium kluyveri (strain ATCC
8527 / DSM 555 / NCIMB 10680) GN=thiM PE=3 SV=1
Length = 269
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 169 RFLAGVASNVNGTNGANGTNGAVPDSPSNSNRGTPRFQGTWFKNLITTGAKPSSSSDIEN 228
+FLAG SNV G + GA+ S S + T K+ I G +S+ IEN
Sbjct: 131 KFLAGETSNVKGVDSLEDGEGALECSRILSEKYNCVVAATGKKDFIVQG---KNSAIIEN 187
Query: 229 HEEELSSATGS 239
E L++ TG+
Sbjct: 188 GTEMLTNITGA 198
>sp|B9E564|THIM_CLOK1 Hydroxyethylthiazole kinase OS=Clostridium kluyveri (strain NBRC
12016) GN=thiM PE=3 SV=1
Length = 269
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 169 RFLAGVASNVNGTNGANGTNGAVPDSPSNSNRGTPRFQGTWFKNLITTGAKPSSSSDIEN 228
+FLAG SNV G + GA+ S S + T K+ I G +S+ IEN
Sbjct: 131 KFLAGETSNVKGVDSLEDGEGALECSRILSEKYNCVVAATGKKDFIVQG---KNSAIIEN 187
Query: 229 HEEELSSATGS 239
E L++ TG+
Sbjct: 188 GTEMLTNITGA 198
>sp|Q1GX86|PRMA_METFK Ribosomal protein L11 methyltransferase OS=Methylobacillus
flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=prmA
PE=3 SV=1
Length = 295
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 13/71 (18%)
Query: 189 GAVPDSPSNSNRGTPRFQ-----------GTWFKNLITTGAKPSSSSDIENHEEELSSAT 237
GA+ S ++N TP Q G W +N++T A S+D+++ EELS+AT
Sbjct: 26 GALSASIEDANAETPDEQPIFGEPGDPPPGIWQQNVVT--ALLDESADLDSLLEELSAAT 83
Query: 238 GSRSRRSSTAT 248
G R ST T
Sbjct: 84 GITDFRYSTET 94
>sp|Q09623|YS84_CAEEL Uncharacterized RING finger protein ZK945.4 OS=Caenorhabditis
elegans GN=ZK945.4 PE=4 SV=3
Length = 499
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 58 SGVFSCPSGRNPMYTYRESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFCD 117
S + +CP R +++ + K NFSI ++ Q +++ + RN N CD
Sbjct: 48 SSIIACPFDRIETRIWKKDVTRLKKNFSILEIKQEVKDRKNRVISEKNEKKERNKNGVCD 107
Query: 118 E 118
E
Sbjct: 108 E 108
>sp|Q6ICB0|DESI1_HUMAN Desumoylating isopeptidase 1 OS=Homo sapiens GN=DESI1 PE=1 SV=1
Length = 168
Score = 30.8 bits (68), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 6/117 (5%)
Query: 22 RYFSPYGLNCRGINSLSFTPQVYGDEEWSFGFCEQGSGVFSCPSGRNPMYTYRESIVLGK 81
R SP L + + + T V +E+ FG G+ SCP G + + +G
Sbjct: 22 RRLSPIMLG-KQLEGIWHTSIVVHKDEFFFG----SGGISSCPPGGTLLGPPDSVVDVGS 76
Query: 82 TNFSIFKVNQILRELSRE-WPGNSYDLLGRNCNHFCDEFCDRLGVPKLPGWVNRFAN 137
T + + L L + G +Y+L NCN F +E L K+P ++ +
Sbjct: 77 TEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDLPS 133
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,568,561
Number of Sequences: 539616
Number of extensions: 4198900
Number of successful extensions: 11526
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 11370
Number of HSP's gapped (non-prelim): 221
length of query: 252
length of database: 191,569,459
effective HSP length: 115
effective length of query: 137
effective length of database: 129,513,619
effective search space: 17743365803
effective search space used: 17743365803
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)