Query 025506
Match_columns 252
No_of_seqs 143 out of 438
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 06:33:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025506.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025506hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0324 Uncharacterized conser 100.0 9.9E-46 2.1E-50 326.9 12.2 176 33-214 34-210 (214)
2 PF05903 Peptidase_C97: PPPDE 100.0 1.2E-38 2.6E-43 266.5 6.3 116 23-141 22-139 (151)
3 PF05608 DUF778: Protein of un 91.5 0.34 7.3E-06 41.2 4.8 41 85-125 75-115 (136)
4 PF04970 LRAT: Lecithin retino 90.7 0.075 1.6E-06 42.6 0.0 37 81-120 83-120 (125)
5 PF09601 DUF2459: Protein of u 68.6 5.7 0.00012 34.6 3.4 44 82-126 96-162 (173)
6 PF08405 Calici_PP_N: Viral po 67.1 5.4 0.00012 38.8 3.1 70 37-124 23-99 (358)
7 PF13387 DUF4105: Domain of un 57.0 9.4 0.0002 32.6 2.6 49 81-129 102-154 (176)
8 PF00767 Poty_coat: Potyvirus 51.1 6.9 0.00015 36.1 0.9 74 112-185 131-217 (237)
9 PF04412 DUF521: Protein of un 42.2 22 0.00049 35.0 2.9 79 81-162 267-353 (400)
10 KOG3150 Uncharacterized conser 41.5 18 0.00039 32.3 1.9 61 71-131 74-137 (182)
11 PF04046 PSP: PSP; InterPro: 37.8 30 0.00066 24.8 2.3 26 115-140 5-32 (48)
12 cd02998 PDI_a_ERp38 PDIa famil 35.9 15 0.00033 26.7 0.6 47 87-133 34-81 (105)
13 COG1384 LysS Lysyl-tRNA synthe 32.8 43 0.00093 34.5 3.3 104 48-166 20-131 (521)
14 smart00581 PSP proline-rich do 32.8 41 0.0009 24.8 2.3 26 115-140 9-36 (54)
15 PF11328 DUF3130: Protein of u 32.7 92 0.002 25.2 4.5 64 79-155 1-73 (90)
16 TIGR01514 NAPRTase nicotinate 30.5 22 0.00047 35.1 0.8 43 87-129 46-89 (394)
17 TIGR02117 chp_urease_rgn conse 29.8 60 0.0013 29.2 3.4 44 82-126 126-193 (208)
18 PF14898 DUF4491: Domain of un 28.5 29 0.00062 28.2 1.0 17 34-53 16-32 (94)
19 PF11931 DUF3449: Domain of un 24.4 25 0.00054 31.7 0.0 38 125-162 85-123 (196)
20 cd01781 AF6_RA_repeat2 Ubiquit 22.0 2.1E+02 0.0046 23.3 4.9 39 72-110 15-54 (100)
21 PF07218 RAP1: Rhoptry-associa 21.5 1.1E+02 0.0023 32.5 3.8 30 147-176 96-128 (782)
No 1
>KOG0324 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=9.9e-46 Score=326.89 Aligned_cols=176 Identities=35% Similarity=0.517 Sum_probs=151.7
Q ss_pred ccccceeeEEEcCceeEEeccccC-CCceeecCCCCCCCCceEEEEEecceeccHHHHHHHHHHhccCCCCCccccccCc
Q 025506 33 GINSLSFTPQVYGDEEWSFGFCEQ-GSGVFSCPSGRNPMYTYRESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLGRN 111 (252)
Q Consensus 33 GIGvyHTGVeVyG~~EYsFG~~~~-gsGIf~~~P~~tp~~~yresI~LG~T~lt~~e~~~iL~~L~~ew~g~sYdLL~rN 111 (252)
|+|+|||||||||. ||+||+|+. .+|||+++|+++|+++||++|.||.|++++++|++||++|+++|+|++||||.||
T Consensus 34 GlGIfHSgIeV~g~-EyayG~h~~~~sGIfe~~P~~~~~f~fr~sI~lG~Td~~~~~v~~~le~L~~ey~G~~YhL~~kN 112 (214)
T KOG0324|consen 34 GLGIFHSGIEVHGV-EYAYGAHEYPSSGIFEVEPGNCPEFTFRKSILLGSTDLTEDDVRRILEELSEEYRGNSYHLLTKN 112 (214)
T ss_pred cceeEeeeEEEece-eeeccccccCCCCeEeeCCCCCCCCceeEEEEecCCCCCHHHHHHHHHHHHhhcCCceehhhhhc
Confidence 44559999999998 999999995 5999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHhhcCCCCCChHHHHHHhhhhhhhcccchhHHHhhcccceeeecccceeeeeeccccCccCCCCCCCCCCCC
Q 025506 112 CNHFCDEFCDRLGVPKLPGWVNRFANAGDAAMEVAGTTALRLRQAKTEIVSASKVAYRFLAGVASNVNGTNGANGTNGAV 191 (252)
Q Consensus 112 CNHFSdalc~~L~Gk~IP~wInRlA~iG~~~~~~~~nta~~~rqak~~~v~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 191 (252)
|||||+++|++|+||+||+||||||++|..++| +.+....+..+.+.-+.+++.++.-+..++.+....+. .+..
T Consensus 113 CNHFsn~la~~Ltgk~IP~winrLa~~~~~~~~---~~~~p~~~~~t~~~~~~~~~~~~~~~~~~~~~~~s~~s--~~~~ 187 (214)
T KOG0324|consen 113 CNHFSNELALQLTGKKIPSWVNRLARAGLCSLC---NCLLPMLQNLTPVVLASSVVERFDEEENSKKKLASSGS--PSRS 187 (214)
T ss_pred cchhHHHHHHHHcCCCccHHHHHHHHHhhhhHH---hhcchhhhcCCccccccccccccCccccccccccccCC--Cccc
Confidence 999999999999999999999999999987444 78888888888888899888888877666554433222 3333
Q ss_pred CCCCCCCCCCCCceehhhhhHhh
Q 025506 192 PDSPSNSNRGTPRFQGTWFKNLI 214 (252)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~ 214 (252)
+--++.++.+.++.|+.|.+...
T Consensus 188 ~~~~s~s~~~~~~~~~~~~~~~~ 210 (214)
T KOG0324|consen 188 APLLSASDSGLILLSGPSLKRER 210 (214)
T ss_pred CCCCCcCcCccccccCccccccc
Confidence 44456777889999999987654
No 2
>PF05903 Peptidase_C97: PPPDE putative peptidase domain; InterPro: IPR008580 This domain consists of the N-terminal portion of several eukaryotic sequences. The function of this domain is unknown.; PDB: 2WP7_A 3EBQ_A.
Probab=100.00 E-value=1.2e-38 Score=266.47 Aligned_cols=116 Identities=45% Similarity=0.780 Sum_probs=89.8
Q ss_pred eeecCCccccccccceeeEEEcCceeEEeccccC-CCceeecCCCC-CCCCceEEEEEecceeccHHHHHHHHHHhccCC
Q 025506 23 YFSPYGLNCRGINSLSFTPQVYGDEEWSFGFCEQ-GSGVFSCPSGR-NPMYTYRESIVLGKTNFSIFKVNQILRELSREW 100 (252)
Q Consensus 23 ~~~~lG~~i~GIGvyHTGVeVyG~~EYsFG~~~~-gsGIf~~~P~~-tp~~~yresI~LG~T~lt~~e~~~iL~~L~~ew 100 (252)
+...+|++++|| |||||||||+ ||+||+|+. .+||+.++|+. .++++|+++|+||+|.+++++|+++|++|+++|
T Consensus 22 ~~~~lG~~~~Gi--~HtgV~v~G~-Ey~fg~~~~~~~GI~~~~P~~~~~~~~~~~~i~lG~T~~~~~~~~~~l~~l~~~~ 98 (151)
T PF05903_consen 22 SLMWLGLQIDGI--YHTGVEVYGK-EYAFGGHDDPDSGIFECPPGHTSPGGTPRESIELGETTLSEEEFEEILRSLSREF 98 (151)
T ss_dssp HHHHCSS-------EEEEEEETTE-EEEEET-----TECEEESTT-STT--S-SEEEEEEEE---HHHHHHHHHHHHTT-
T ss_pred hHhhhCCccCce--EEEEEEEccE-EEEecccccccCcceEccCcCCCCCcceEEEEeCCCccCCHHHHHHHHHHHHhhc
Confidence 556789999999 9999999998 999998875 49999999998 777899999999999999999999999999999
Q ss_pred CCCccccccCcccchHHHHHhhcCCCCCChHHHHHHhhhhh
Q 025506 101 PGNSYDLLGRNCNHFCDEFCDRLGVPKLPGWVNRFANAGDA 141 (252)
Q Consensus 101 ~g~sYdLL~rNCNHFSdalc~~L~Gk~IP~wInRlA~iG~~ 141 (252)
.+++||||+||||||||+||++|+|++||+||+|+|+++..
T Consensus 99 ~~~~Y~Ll~~NCNhFs~~l~~~L~g~~iP~~i~~~a~~~~~ 139 (151)
T PF05903_consen 99 TGDSYHLLNRNCNHFSDALCQFLTGKPIPSWINRLARIALS 139 (151)
T ss_dssp SGGG-BTTTBSHHHHHHHHHHHHHS----HHHHTHHHHHHT
T ss_pred cCCcchhhhhhhhHHHHHHHHHhCCCCCCHHHHhhhHHhcc
Confidence 99999999999999999999999999999999999998874
No 3
>PF05608 DUF778: Protein of unknown function (DUF778); InterPro: IPR008496 This family consists of several eukaryotic proteins of unknown function.
Probab=91.53 E-value=0.34 Score=41.24 Aligned_cols=41 Identities=20% Similarity=0.394 Sum_probs=36.2
Q ss_pred cHHHHHHHHHHhccCCCCCccccccCcccchHHHHHhhcCC
Q 025506 85 SIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGV 125 (252)
Q Consensus 85 t~~e~~~iL~~L~~ew~g~sYdLL~rNCNHFSdalc~~L~G 125 (252)
+.+..++.|++-.++|....|+|+..||.+|...+..+|.=
T Consensus 75 ~~~~wD~Av~~a~~~y~~r~yNlf~~NCHSfVA~aLN~m~Y 115 (136)
T PF05608_consen 75 GAESWDDAVQKASEEYKHRMYNLFTDNCHSFVANALNRMRY 115 (136)
T ss_pred cHHHHHHHHHHHHHHHhhCceeeeccCcHHHHHHHHHhccC
Confidence 66778888888889999999999999999999999888853
No 4
>PF04970 LRAT: Lecithin retinol acyltransferase; InterPro: IPR007053 This entry represents a conserved sequence region found in proteins from viruses, bacteria and eukaryotes. It contains a well-conserved NCEHF motif, though its function in these proteins is unknown.; PDB: 2KYT_A 4DOT_A 4FA0_A.
Probab=90.67 E-value=0.075 Score=42.63 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=19.6
Q ss_pred ceeccHHHHHHHHHHhc-cCCCCCccccccCcccchHHHHH
Q 025506 81 KTNFSIFKVNQILRELS-REWPGNSYDLLGRNCNHFCDEFC 120 (252)
Q Consensus 81 ~T~lt~~e~~~iL~~L~-~ew~g~sYdLL~rNCNHFSdalc 120 (252)
....+.+++.+-..++- +++ .||||.+||-||+..+.
T Consensus 83 ~~~~~~~~iv~rA~~~lg~~~---~Y~l~~nNCEhFa~~c~ 120 (125)
T PF04970_consen 83 YKPFPPEEIVERAESRLGKEF---EYNLLFNNCEHFATWCR 120 (125)
T ss_dssp S--S-HHHHHHHHHHTTT-EE---SS---HHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHcCCC---ccCCCcCCHHHHHHHHH
Confidence 34455555555444433 344 89999999999987553
No 5
>PF09601 DUF2459: Protein of unknown function (DUF2459); InterPro: IPR011727 This conserved hypothetical protein of unknown function is predominantly found in proteobacteria. Its function is unknown and its genome context is not well-conserved. It is found amid urease genes in at least one species.
Probab=68.56 E-value=5.7 Score=34.61 Aligned_cols=44 Identities=16% Similarity=0.395 Sum_probs=34.7
Q ss_pred eeccHHHHHHHHHHhccCCCCC-----------------------ccccccCcccchHHHHHhhcCCC
Q 025506 82 TNFSIFKVNQILRELSREWPGN-----------------------SYDLLGRNCNHFCDEFCDRLGVP 126 (252)
Q Consensus 82 T~lt~~e~~~iL~~L~~ew~g~-----------------------sYdLL~rNCNHFSdalc~~L~Gk 126 (252)
..++++++.++++.|+..|.-+ +|+|+ ++||+-+++..+..+.+
T Consensus 96 i~ls~~~y~~L~~~I~~sf~~~~~g~~~~i~~~y~~~d~Fy~A~G~Y~l~-~TCNtWta~~L~aaG~~ 162 (173)
T PF09601_consen 96 IRLSEAQYRRLVAFIRASFQRDADGRPIPIGPGYGPDDAFYEAKGRYSLF-NTCNTWTARALKAAGLP 162 (173)
T ss_pred EEcCHHHHHHHHHHHHHHhccCCCCCeEEeccccCCCCeeEeeccceEee-cCcHHHHHHHHHHcCCC
Confidence 4789999999999888665543 36655 79999999999987655
No 6
>PF08405 Calici_PP_N: Viral polyprotein N-terminal; InterPro: IPR013614 This domain is found at the N terminus of non-structural viral polyproteins of the Caliciviridae subfamily. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity, 0044419 interspecies interaction between organisms
Probab=67.05 E-value=5.4 Score=38.75 Aligned_cols=70 Identities=20% Similarity=0.386 Sum_probs=44.3
Q ss_pred ceeeEEEcCceeEEeccccC----CCceeecCCCCCC---CCceEEEEEecceeccHHHHHHHHHHhccCCCCCcccccc
Q 025506 37 LSFTPQVYGDEEWSFGFCEQ----GSGVFSCPSGRNP---MYTYRESIVLGKTNFSIFKVNQILRELSREWPGNSYDLLG 109 (252)
Q Consensus 37 yHTGVeVyG~~EYsFG~~~~----gsGIf~~~P~~tp---~~~yresI~LG~T~lt~~e~~~iL~~L~~ew~g~sYdLL~ 109 (252)
||-+|-| |+ -+-+|-|.. +.+.+...|-..+ -++|+ -.++.+++.+.+ .+.| -|..+.
T Consensus 23 yHYaIYi-~~-G~~lgvh~p~aai~~a~i~l~~ls~~WRvvy~P~-------~~~~~~~L~~l~---ge~~---PY~a~~ 87 (358)
T PF08405_consen 23 YHYAIYI-GK-GLVLGVHSPGAAISIATIELEPLSLWWRVVYTPR-------QRLSYDQLRKLE---GEKF---PYAAFT 87 (358)
T ss_pred EEEEEEe-cC-CeEEeecCcchhceeeeEEEeecccccccccCCC-------CCCCHHHHHHhc---CCCC---Cchhhc
Confidence 9999999 44 588987754 3455555554443 23333 345666554433 2445 489999
Q ss_pred CcccchHHHHHhhcC
Q 025506 110 RNCNHFCDEFCDRLG 124 (252)
Q Consensus 110 rNCNHFSdalc~~L~ 124 (252)
+||=||| |+-|.
T Consensus 88 nNCy~fc---c~vl~ 99 (358)
T PF08405_consen 88 NNCYTFC---CWVLG 99 (358)
T ss_pred cchHHHh---HhhcC
Confidence 9999999 55443
No 7
>PF13387 DUF4105: Domain of unknown function (DUF4105)
Probab=57.00 E-value=9.4 Score=32.56 Aligned_cols=49 Identities=20% Similarity=0.307 Sum_probs=38.7
Q ss_pred ceeccHHHHHHHHHHhccC----CCCCccccccCcccchHHHHHhhcCCCCCC
Q 025506 81 KTNFSIFKVNQILRELSRE----WPGNSYDLLGRNCNHFCDEFCDRLGVPKLP 129 (252)
Q Consensus 81 ~T~lt~~e~~~iL~~L~~e----w~g~sYdLL~rNCNHFSdalc~~L~Gk~IP 129 (252)
...++++|.+.++..|.+. -.+-.||.+..||=.-.-++.+...++.+|
T Consensus 102 ~LnLs~ee~~~l~~~l~e~~~~~~~~~~Y~f~~~NCat~i~~~l~~~~~~~l~ 154 (176)
T PF13387_consen 102 PLNLSPEEKQRLFRHLWENANPENRPYRYNFFTDNCATRIRDLLDKARPGSLP 154 (176)
T ss_pred EeeCCHHHHHHHHHHHHHhccccccceeehhhhcchHHHHHHHHHHHcCCCee
Confidence 4588999999999877642 245599999999999988888888776444
No 8
>PF00767 Poty_coat: Potyvirus coat protein; InterPro: IPR001592 This protease is found in genome polyproteins of potyviruses. The genome polyprotein contains: N-terminal protein (P1), helper component protease (3.4.22 from EC, HC-PRO), protein P3, 6KD protein (6K1), cytoplasmic inclusion protein (CI), 6KD protein 2 (6K2), genome-linked protein (VPG), nuclear inclusion protein A (3.4.22 from EC), nuclear inclusion protein B (2.7.7.48 from EC) and coat protein (CP). The coat protein is at the C terminus of the polyprotein.; GO: 0019028 viral capsid
Probab=51.07 E-value=6.9 Score=36.13 Aligned_cols=74 Identities=23% Similarity=0.233 Sum_probs=53.9
Q ss_pred ccchHHHHHhhcC-----CCCCChHHH-------HHHhhhhhhhcccchhHHHhhccc-ceeeecccceeeeeeccccCc
Q 025506 112 CNHFCDEFCDRLG-----VPKLPGWVN-------RFANAGDAAMEVAGTTALRLRQAK-TEIVSASKVAYRFLAGVASNV 178 (252)
Q Consensus 112 CNHFSdalc~~L~-----Gk~IP~wIn-------RlA~iG~~~~~~~~nta~~~rqak-~~~v~a~~~a~~~~~~~~~~~ 178 (252)
=-||+|.....+. .+-+|.|=. .+|+++--|+++-.-|-.|.|+|. ..-++|++....-|||..-++
T Consensus 131 M~hFSd~aeayie~rn~~~~ymPryg~~rnl~d~sla~yaFDFy~~ts~tp~rarEa~~QmKaAAl~~~~~rlfglDg~v 210 (237)
T PF00767_consen 131 MRHFSDAAEAYIEMRNSEEPYMPRYGLQRNLTDMSLARYAFDFYEVTSRTPARAREAHNQMKAAALRGTKNRLFGLDGNV 210 (237)
T ss_pred HHHhhHHHHHHHHHhcccCCchhhhhhhcCCccccccceeeeEeecCCCCCHHHHHHHHHHHHHhhccccCceeeecCCC
Confidence 3499988877773 345888853 266777777777777777777555 333789999999999988888
Q ss_pred cCCCCCC
Q 025506 179 NGTNGAN 185 (252)
Q Consensus 179 ~~~~~~~ 185 (252)
.+..+|+
T Consensus 211 ~~~~edt 217 (237)
T PF00767_consen 211 GTSEEDT 217 (237)
T ss_pred CCCccCc
Confidence 7766653
No 9
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=42.16 E-value=22 Score=35.00 Aligned_cols=79 Identities=22% Similarity=0.336 Sum_probs=51.1
Q ss_pred ceeccHHHHHHHHHHhccCCCCCccccccCcccchH----HHHHhhcCCCC----CChHHHHHHhhhhhhhcccchhHHH
Q 025506 81 KTNFSIFKVNQILRELSREWPGNSYDLLGRNCNHFC----DEFCDRLGVPK----LPGWVNRFANAGDAAMEVAGTTALR 152 (252)
Q Consensus 81 ~T~lt~~e~~~iL~~L~~ew~g~sYdLL~rNCNHFS----dalc~~L~Gk~----IP~wInRlA~iG~~~~~~~~nta~~ 152 (252)
+..++.+++.+..++|. .-..+.-|++.==|+||| .+++++|-|++ +|-||.--..+-..+.. + .-..+
T Consensus 267 ~i~i~~~dl~~~~~~l~-~~~~~~~D~V~lGcPH~S~~El~~ia~ll~gr~~~~~~~~~i~t~~~v~~~a~~-~-G~~~~ 343 (400)
T PF04412_consen 267 RITITDADLEEVYEELN-TAGDEKVDLVALGCPHLSLEELREIAELLEGRKVHPNVPLWITTSRAVYELAER-M-GYVER 343 (400)
T ss_pred EEEeCHHHHHHHHHHhc-cCCCCCCCEEEECCCCCCHHHHHHHHHHHhCCCCCCCceEEEECCHHHHHHHHh-C-CHHHH
Confidence 34678999999999997 667778899999999999 45666666765 55565533322221111 1 13445
Q ss_pred hhcccceeee
Q 025506 153 LRQAKTEIVS 162 (252)
Q Consensus 153 ~rqak~~~v~ 162 (252)
++++.-.+|.
T Consensus 344 le~~G~~iv~ 353 (400)
T PF04412_consen 344 LEKAGVQIVT 353 (400)
T ss_pred HHHcCCEEEc
Confidence 6666655544
No 10
>KOG3150 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.49 E-value=18 Score=32.25 Aligned_cols=61 Identities=15% Similarity=0.229 Sum_probs=44.1
Q ss_pred CceEEEEEecceec---cHHHHHHHHHHhccCCCCCccccccCcccchHHHHHhhcCCCCCChH
Q 025506 71 YTYRESIVLGKTNF---SIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPKLPGW 131 (252)
Q Consensus 71 ~~yresI~LG~T~l---t~~e~~~iL~~L~~ew~g~sYdLL~rNCNHFSdalc~~L~Gk~IP~w 131 (252)
+.+-+-+.|+.... .+...++.|++-+++|...+|||+.-||..|-.-...+|.=+.--.|
T Consensus 74 G~paRY~ql~p~~~~~~g~~~wD~Av~~as~~y~hr~hNi~cdNCHShVA~aLn~mry~~s~~W 137 (182)
T KOG3150|consen 74 GPPARYIQLDPEKVCGPGARTWDNAVSKASREYKHRTHNIFCDNCHSHVANALNRMRYGGSTEW 137 (182)
T ss_pred CCcceeEEeChhheeCCCCchHHHHHHHHHHHhhhcccceeeccHHHHHHHHHHHhhcCCCCCc
Confidence 34444455554422 55778889999999999999999999999998877777754433333
No 11
>PF04046 PSP: PSP; InterPro: IPR006568 PSP is a proline-rich domain of unknown function found in spliceosome associated proteins.
Probab=37.84 E-value=30 Score=24.84 Aligned_cols=26 Identities=31% Similarity=0.609 Sum_probs=21.3
Q ss_pred hHHHHHhhcC--CCCCChHHHHHHhhhh
Q 025506 115 FCDEFCDRLG--VPKLPGWVNRFANAGD 140 (252)
Q Consensus 115 FSdalc~~L~--Gk~IP~wInRlA~iG~ 140 (252)
.|+++-++|. ...+|.||.++.++|-
T Consensus 5 lS~~LR~ALg~~~~~~PPwl~~M~~~G~ 32 (48)
T PF04046_consen 5 LSDELREALGMQENDPPPWLYRMRRLGY 32 (48)
T ss_pred cCHHHHHHcCCCCCCCChHHHHHHhcCC
Confidence 4788888887 3479999999999873
No 12
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=35.89 E-value=15 Score=26.70 Aligned_cols=47 Identities=9% Similarity=0.165 Sum_probs=35.8
Q ss_pred HHHHHHHHHhccCCC-CCccccccCcccchHHHHHhhcCCCCCChHHH
Q 025506 87 FKVNQILRELSREWP-GNSYDLLGRNCNHFCDEFCDRLGVPKLPGWVN 133 (252)
Q Consensus 87 ~e~~~iL~~L~~ew~-g~sYdLL~rNCNHFSdalc~~L~Gk~IP~wIn 133 (252)
.++...++++.+++. ...+.++.=||+....++|+.+....+|.++.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 34 KNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred HhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 345566667766665 34678889999997788999999999998764
No 13
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=32.80 E-value=43 Score=34.45 Aligned_cols=104 Identities=20% Similarity=0.298 Sum_probs=69.6
Q ss_pred eEEeccccCCCceeecCCCCCCCCceEEEEEecceeccHHHHHHHHHHhcc----CCCCCccccccCcccchH--HHHHh
Q 025506 48 EWSFGFCEQGSGVFSCPSGRNPMYTYRESIVLGKTNFSIFKVNQILRELSR----EWPGNSYDLLGRNCNHFC--DEFCD 121 (252)
Q Consensus 48 EYsFG~~~~gsGIf~~~P~~tp~~~yresI~LG~T~lt~~e~~~iL~~L~~----ew~g~sYdLL~rNCNHFS--dalc~ 121 (252)
+|-|- +|| .|.|.-+-|++|| -++-+-|...|+++.. -|..++||.|++==..+- +++-+
T Consensus 20 ~~~v~-----tGi--sPSG~~HIGn~rE-------v~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~ 85 (521)
T COG1384 20 EYVVA-----TGI--SPSGLIHIGNFRE-------VLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQ 85 (521)
T ss_pred cEEEe-----cCc--CCCCCcccccHHH-------HHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHH
Confidence 67775 786 4444445588987 3577888888887763 599999999988777777 77777
Q ss_pred hcCC--CCCChHHHHHHhhhhhhhcccchhHHHhhcccceeeecccc
Q 025506 122 RLGV--PKLPGWVNRFANAGDAAMEVAGTTALRLRQAKTEIVSASKV 166 (252)
Q Consensus 122 ~L~G--k~IP~wInRlA~iG~~~~~~~~nta~~~rqak~~~v~a~~~ 166 (252)
.|.- +.||.=.-.-...++.+..-..-...++. .+-|.++|++.
T Consensus 86 Ylg~Plt~IPdP~G~~~Sya~hf~~~f~~~l~~~G-i~~E~~s~se~ 131 (521)
T COG1384 86 YLGMPLTEIPDPFGCCDSYAEHFLRPFEEFLDEFG-IEVEFVSATEL 131 (521)
T ss_pred HcCCccccCCCCccccchHHHHHHHHHHHHHHhcC-CceEEEEhHHh
Confidence 7764 37885554455555555544444455555 55555555543
No 14
>smart00581 PSP proline-rich domain in spliceosome associated proteins.
Probab=32.78 E-value=41 Score=24.75 Aligned_cols=26 Identities=31% Similarity=0.648 Sum_probs=21.1
Q ss_pred hHHHHHhhcCC--CCCChHHHHHHhhhh
Q 025506 115 FCDEFCDRLGV--PKLPGWVNRFANAGD 140 (252)
Q Consensus 115 FSdalc~~L~G--k~IP~wInRlA~iG~ 140 (252)
-|+++-++|+- ..+|.||.++.++|-
T Consensus 9 lS~~LR~ALG~~~~~pPPWl~~Mq~~G~ 36 (54)
T smart00581 9 ISDELREALGLPPGQPPPWLYRMRRLGY 36 (54)
T ss_pred CCHHHHHHcCCCCCCCChHHHHHHHHCC
Confidence 46889999973 369999999999873
No 15
>PF11328 DUF3130: Protein of unknown function (DUF3130; InterPro: IPR021477 This bacterial family of proteins has no known function.
Probab=32.74 E-value=92 Score=25.20 Aligned_cols=64 Identities=16% Similarity=0.197 Sum_probs=44.2
Q ss_pred ecceeccHHHHHHHHHHhccCCCCCccccccCc---------ccchHHHHHhhcCCCCCChHHHHHHhhhhhhhcccchh
Q 025506 79 LGKTNFSIFKVNQILRELSREWPGNSYDLLGRN---------CNHFCDEFCDRLGVPKLPGWVNRFANAGDAAMEVAGTT 149 (252)
Q Consensus 79 LG~T~lt~~e~~~iL~~L~~ew~g~sYdLL~rN---------CNHFSdalc~~L~Gk~IP~wInRlA~iG~~~~~~~~nt 149 (252)
|+++.+.+..|.....+|...=.+-.|=.|+.| -|||+.++.. |-.+-+.|-.+.+.-
T Consensus 1 M~EIkv~e~tf~~~at~L~s~~~~~~y~plK~gnMaysraNsin~~r~Al~d-------------Lv~~Ve~fq~v~~~D 67 (90)
T PF11328_consen 1 MSEIKVNEETFQKHATKLKSKASGVEYLPLKNGNMAYSRANSINQLRTALID-------------LVDVVENFQQVVKKD 67 (90)
T ss_pred CCceehhHHHHHHHHHHHHcccCCcccccccCCCeehhhhhhHHHHHHHHHH-------------HHHHHHHHHHHHHHH
Confidence 678899999999999999876666566555443 4677777665 444445555566666
Q ss_pred HHHhhc
Q 025506 150 ALRLRQ 155 (252)
Q Consensus 150 a~~~rq 155 (252)
|.|+++
T Consensus 68 A~Rlkk 73 (90)
T PF11328_consen 68 ASRLKK 73 (90)
T ss_pred HHHHHH
Confidence 666664
No 16
>TIGR01514 NAPRTase nicotinate phosphoribosyltransferase. This model represents nicotinate phosphoribosyltransferase, the first enzyme in the salvage pathway of NAD biosynthesis from nicontinate (niacin). Members are primary proteobacterial but also include yeasts and Methanosarcina acetivorans. A related family, apparently non-overlapping in species distribution, is TIGR01513. Members of that family differ in substantially in sequence and have a long C-terminal extension missing from this family, but are proposed also to act as nicotinate phosphoribosyltransferase (see model TIGR01513).
Probab=30.53 E-value=22 Score=35.09 Aligned_cols=43 Identities=9% Similarity=0.182 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcc-CCCCCccccccCcccchHHHHHhhcCCCCCC
Q 025506 87 FKVNQILRELSR-EWPGNSYDLLGRNCNHFCDEFCDRLGVPKLP 129 (252)
Q Consensus 87 ~e~~~iL~~L~~-ew~g~sYdLL~rNCNHFSdalc~~L~Gk~IP 129 (252)
+++++.|+.|.. .|+.+.++-|+++|++|.++|.++|-+=+++
T Consensus 46 ~gl~~~i~~l~~l~ft~eel~yL~~~~~~~~~~fl~~L~~frf~ 89 (394)
T TIGR01514 46 EALREEISALGNLRFTDDEIEYLKQELPYLKSDYIDYLRNFRFH 89 (394)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHhccCCCCHHHHHHHHhCCCC
Confidence 689999999986 8999999999999999999999999765553
No 17
>TIGR02117 chp_urease_rgn conserved hypothetical protein. This conserved hypothetical protein of unknown function is found in several Proteobacteria. Its function is unknown and its genome context is not well-conserved. It is found amid urease genes in at least one species.
Probab=29.76 E-value=60 Score=29.24 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=31.0
Q ss_pred eeccHHHHHHHHHHhccCCCCC------------------------ccccccCcccchHHHHHhhcCCC
Q 025506 82 TNFSIFKVNQILRELSREWPGN------------------------SYDLLGRNCNHFCDEFCDRLGVP 126 (252)
Q Consensus 82 T~lt~~e~~~iL~~L~~ew~g~------------------------sYdLL~rNCNHFSdalc~~L~Gk 126 (252)
..++++++.++++-+++.|.-+ .|||| ++||+-+.+..+.-+.+
T Consensus 126 l~vs~~qy~~L~~~I~~sf~~~~~g~~~~l~~~~yg~~d~Fy~A~G~Y~l~-~TCNtWta~aL~aAGl~ 193 (208)
T TIGR02117 126 LLVSENQYNRLMDFISASFVRDAEGRVIPLPGGIYGDSDAFYAANGRYNAL-NTCNTWTAAALRSAGLR 193 (208)
T ss_pred EEcCHHHHHHHHHHHHHhcCcCCCCCceecCCCCCCCCceeEeeeeeEEee-ccchHHHHHHHHHcCCC
Confidence 4789999999888776433211 25554 79999999998876543
No 18
>PF14898 DUF4491: Domain of unknown function (DUF4491)
Probab=28.53 E-value=29 Score=28.24 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=12.4
Q ss_pred cccceeeEEEcCceeEEecc
Q 025506 34 INSLSFTPQVYGDEEWSFGF 53 (252)
Q Consensus 34 IGvyHTGVeVyG~~EYsFG~ 53 (252)
||+||--| |.+ ||+||.
T Consensus 16 IG~fHpiV-Ik~--EYyfg~ 32 (94)
T PF14898_consen 16 IGLFHPIV-IKG--EYYFGT 32 (94)
T ss_pred HHccCeEE-EEE--EEecCC
Confidence 46699876 444 899993
No 19
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised. It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.
Probab=24.37 E-value=25 Score=31.73 Aligned_cols=38 Identities=18% Similarity=0.334 Sum_probs=0.0
Q ss_pred CCCCChHHHHHHhhhhhhh-cccchhHHHhhcccceeee
Q 025506 125 VPKLPGWVNRFANAGDAAM-EVAGTTALRLRQAKTEIVS 162 (252)
Q Consensus 125 Gk~IP~wInRlA~iG~~~~-~~~~nta~~~rqak~~~v~ 162 (252)
|||||-|+-.|..++.-+. ++-+|..-.=|.|=..=.+
T Consensus 85 GkPIPyWLYKLhGL~~ey~CEICGN~~Y~GrkaFekHF~ 123 (196)
T PF11931_consen 85 GKPIPYWLYKLHGLGVEYKCEICGNQSYKGRKAFEKHFQ 123 (196)
T ss_dssp ---------------------------------------
T ss_pred CCcccHHHHHHhCCCCeeeeEeCCCcceecHHHHHHhcC
Confidence 8999999999999999987 5677777665555444343
No 20
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=21.98 E-value=2.1e+02 Score=23.33 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=30.4
Q ss_pred ceEEEEEecceeccHHHHHHHHHHhc-cCCCCCccccccC
Q 025506 72 TYRESIVLGKTNFSIFKVNQILRELS-REWPGNSYDLLGR 110 (252)
Q Consensus 72 ~yresI~LG~T~lt~~e~~~iL~~L~-~ew~g~sYdLL~r 110 (252)
.+.++|.+-..+.+++-|.+.|+... +.-.++.|.|..-
T Consensus 15 ~~YKSIlvt~~~~a~~vV~eALeKygL~~e~p~~Y~LveV 54 (100)
T cd01781 15 RPYKTILLSINDNADRIVGEALEKYGLEKSDPDDYCLVEV 54 (100)
T ss_pred CCeEEEEecCCccHHHHHHHHHHHhCCCccCccceEEEEE
Confidence 35559999999999999999999776 4556677776654
No 21
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=21.48 E-value=1.1e+02 Score=32.50 Aligned_cols=30 Identities=23% Similarity=0.402 Sum_probs=17.3
Q ss_pred chhHHHhhcccceee---ecccceeeeeecccc
Q 025506 147 GTTALRLRQAKTEIV---SASKVAYRFLAGVAS 176 (252)
Q Consensus 147 ~nta~~~rqak~~~v---~a~~~a~~~~~~~~~ 176 (252)
+....|+|.|-..++ -+++.-|.||+...-
T Consensus 96 ~~g~~~~~~~~~~~~~~e~~s~~dw~f~a~~~~ 128 (782)
T PF07218_consen 96 GSGRSRVRSASAAAILEEDDSNGDWNFMANQNE 128 (782)
T ss_pred CCCccccccchhhhhhcccccccccchhcCccc
Confidence 334445555442222 268889999996433
Done!