Query 025506
Match_columns 252
No_of_seqs 143 out of 438
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 11:42:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025506.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025506hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wp7_A PPPDE peptidase domain- 100.0 3.7E-43 1.3E-47 300.0 8.2 117 25-148 27-150 (168)
2 2lkt_A Retinoic acid receptor 91.7 0.036 1.2E-06 43.5 0.3 16 104-119 105-120 (125)
3 4dot_A Group XVI phospholipase 91.5 0.051 1.7E-06 44.9 1.0 19 103-121 104-122 (140)
4 4dpz_X HRAS-like suppressor 2; 90.3 0.098 3.4E-06 43.0 1.7 37 83-121 86-122 (137)
5 1rpq_W Peptide E131; receptor- 30.0 10 0.00035 23.0 -0.1 14 111-124 2-15 (26)
6 2wj8_A Nucleoprotein; RNA bind 14.2 79 0.0027 29.8 2.2 43 77-121 270-326 (391)
7 1f9y_A HPPK, protein (6-hydrox 12.6 2E+02 0.0068 23.7 4.0 40 58-97 37-77 (158)
8 1cbk_A Protein (7,8-dihydro-6- 12.4 2E+02 0.0069 23.7 4.0 49 58-106 38-95 (160)
9 4b4o_A Epimerase family protei 12.3 2.8E+02 0.0097 22.8 5.0 51 86-136 195-252 (298)
10 1wxa_A Afadin, AF-6 protein; R 11.0 5.2E+02 0.018 19.8 5.8 52 58-109 9-61 (116)
No 1
>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A
Probab=100.00 E-value=3.7e-43 Score=299.98 Aligned_cols=117 Identities=26% Similarity=0.422 Sum_probs=109.9
Q ss_pred ecCCccccccccceeeEEEcCceeEEeccccCCCceeecCCCCCCCCceEEEEEecceeccHHHHHHHHHHhccC-CCCC
Q 025506 25 SPYGLNCRGINSLSFTPQVYGDEEWSFGFCEQGSGVFSCPSGRNPMYTYRESIVLGKTNFSIFKVNQILRELSRE-WPGN 103 (252)
Q Consensus 25 ~~lG~~i~GIGvyHTGVeVyG~~EYsFG~~~~gsGIf~~~P~~tp~~~yresI~LG~T~lt~~e~~~iL~~L~~e-w~g~ 103 (252)
..+|++++|| |||||||||+ ||+|| ++||+.++|+.+|+++|||+|+||+|++++++|+++|++|+++ |+++
T Consensus 27 ~~lG~~i~Gi--~HtgV~V~G~-EY~FG----~~GI~~~~Pg~~~~g~~resi~lG~T~~~~~~~~~~l~~l~~~~~~g~ 99 (168)
T 2wp7_A 27 IMLGKQLEGI--WHTSIVVHKD-EFFFG----SSGISSCTPGGTLLGPPDSVVDVGNTEVTEEIFLEYLSSLGESLFRGE 99 (168)
T ss_dssp HHTSSCCCCC--EEEEEEETTE-EEEEE----TTEEEEESTTCSTTCSCSEEEEEEEECCCHHHHHHHHHHHHTTTCSGG
T ss_pred HHhCCCcCcE--EEEEEEECCE-EEEEc----CCCeEecCCCcCCCCCeEEEEECCCccCCHHHHHHHHHHhhhccCCcc
Confidence 3579999999 9999999998 99999 5999999999999999999999999999999999999999998 9999
Q ss_pred ccccccCcccchHHHHHhhcCCCCCChHHHHHHh------hhhhhhcccch
Q 025506 104 SYDLLGRNCNHFCDEFCDRLGVPKLPGWVNRFAN------AGDAAMEVAGT 148 (252)
Q Consensus 104 sYdLL~rNCNHFSdalc~~L~Gk~IP~wInRlA~------iG~~~~~~~~n 148 (252)
+||||.||||||||++|++|+||+||+||||||+ +|.++.+..++
T Consensus 100 ~Y~Ll~~NCNhFs~~l~~~L~gk~IP~wInrl~~~vl~tp~G~~l~~~l~~ 150 (168)
T 2wp7_A 100 AYNLFEHNCNTFSNEVAQFLTGRKIPSYITDLPSEVLSTPFGQALRPFLDS 150 (168)
T ss_dssp GCBTTTBSHHHHHHHHHHHHHSCCCCHHHHTHHHHHHTSHHHHHHHHHHTT
T ss_pred cCchhhhccchhHHHHHHHhcCCCCcHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 67777766544
No 2
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=91.72 E-value=0.036 Score=43.47 Aligned_cols=16 Identities=38% Similarity=1.061 Sum_probs=14.1
Q ss_pred ccccccCcccchHHHH
Q 025506 104 SYDLLGRNCNHFCDEF 119 (252)
Q Consensus 104 sYdLL~rNCNHFSdal 119 (252)
.||||.+||=||+..+
T Consensus 105 ~Y~l~~nNCEHFa~~c 120 (125)
T 2lkt_A 105 KYSIVSRNCEHFVTQL 120 (125)
T ss_dssp CSSCHHHHHHHHHHHH
T ss_pred CcCCCccCHHHHHhhh
Confidence 5999999999998654
No 3
>4dot_A Group XVI phospholipase A2; alpha/beta fold, phospholipase/acyltransferase, phosphatidyl phosphatidylethanolamine, membrane, hydrolase; 1.96A {Homo sapiens}
Probab=91.54 E-value=0.051 Score=44.92 Aligned_cols=19 Identities=37% Similarity=0.693 Sum_probs=17.0
Q ss_pred CccccccCcccchHHHHHh
Q 025506 103 NSYDLLGRNCNHFCDEFCD 121 (252)
Q Consensus 103 ~sYdLL~rNCNHFSdalc~ 121 (252)
..|+||.+||-||+..+..
T Consensus 104 ~~Y~ll~nNCEHFvt~cr~ 122 (140)
T 4dot_A 104 VLYKLTSENCEHFVNELRY 122 (140)
T ss_dssp CSSCCCHHHHHHHHHHHHH
T ss_pred ccccccccChHHHHHHHhc
Confidence 6999999999999987765
No 4
>4dpz_X HRAS-like suppressor 2; alpha/beta fold, enzyme phospholipid acyltransferase, hydrol transferase; 1.25A {Homo sapiens} PDB: 4fa0_A 2kyt_A
Probab=90.34 E-value=0.098 Score=42.99 Aligned_cols=37 Identities=24% Similarity=0.387 Sum_probs=18.5
Q ss_pred eccHHHHHHHHHHhccCCCCCccccccCcccchHHHHHh
Q 025506 83 NFSIFKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCD 121 (252)
Q Consensus 83 ~lt~~e~~~iL~~L~~ew~g~sYdLL~rNCNHFSdalc~ 121 (252)
.++.+++.+-..++-.+ -..|+||.+||-||+..+..
T Consensus 86 p~~~~~iv~rA~~~lG~--~~~Y~ll~nNCEHFvt~cry 122 (137)
T 4dpz_X 86 PLPSNKIVKRAEELVGQ--ELPYSLTSDNCEHFVNHLRY 122 (137)
T ss_dssp CCCHHHHHHHHHHHTTC--EEC-----CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCC--CcccCcCccChHHHHHHHhc
Confidence 44555544433322211 24899999999999987754
No 5
>1rpq_W Peptide E131; receptor-peptide complex, membrane protein; HET: NAG BMA NDG CIT; 3.00A {Homo sapiens} PDB: 1kco_A
Probab=29.99 E-value=10 Score=22.99 Aligned_cols=14 Identities=43% Similarity=0.833 Sum_probs=11.0
Q ss_pred cccchHHHHHhhcC
Q 025506 111 NCNHFCDEFCDRLG 124 (252)
Q Consensus 111 NCNHFSdalc~~L~ 124 (252)
.|+|||-++--.|+
T Consensus 2 qcphfcyeldyelc 15 (26)
T 1rpq_W 2 QCPHFCYELDYELC 15 (26)
T ss_dssp CCCTHHHHSSSCCS
T ss_pred CCCeeeeecCcccC
Confidence 59999988766664
No 6
>2wj8_A Nucleoprotein; RNA binding protein RNA complex, nucleocapsid (N), ribonucleoprotein, respiratory syncytial virus (RSV); 3.29A {Human respiratory syncytial virus astrain long} PDB: 2yhm_A 2yhp_A 2yhq_A
Probab=14.24 E-value=79 Score=29.80 Aligned_cols=43 Identities=23% Similarity=0.444 Sum_probs=26.4
Q ss_pred EEecceecc-----HHHHHHHHHHhccCCCCCcccccc---------CcccchHHHHHh
Q 025506 77 IVLGKTNFS-----IFKVNQILRELSREWPGNSYDLLG---------RNCNHFCDEFCD 121 (252)
Q Consensus 77 I~LG~T~lt-----~~e~~~iL~~L~~ew~g~sYdLL~---------rNCNHFSdalc~ 121 (252)
|-||+..+- ..||.+++++|..| ..-|||.. -||+||+.-+..
T Consensus 270 imlgh~svqae~~qv~evy~~~~k~G~E--sG~~Hlr~nPKA~LLSLtncPnFaSVVLG 326 (391)
T 2wj8_A 270 IMLGHASVQAEMEQVVEVYEYAQKLGGE--AGFYHILNNPKASLLSLTQFPHFSSVVLG 326 (391)
T ss_dssp GGGGSHHHHHHHHHHHHHHHHHHHHGGG--GGGTTTTTCGGGGGGCSTTCHHHHHHHHH
T ss_pred eeeehhHHHHHHHHHHHHHHHHHHhCcc--chhhhhhhCCcchheecccCCCchhheec
Confidence 446665432 24677788888754 22355443 599999976543
No 7
>1f9y_A HPPK, protein (6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase); pyrophosphoryl transfer, catalytic mechanism, folate, ternary complex; HET: APC HHR; 0.89A {Escherichia coli} PDB: 1eq0_A 1dy3_A* 1ex8_A* 1eqm_A* 1hka_A 1q0n_A* 1rao_A* 1rb0_A* 2f63_A 2f65_A 3h4a_A* 3ip0_A* 3ud5_A* 3ude_A* 3udv_A* 4f7v_A* 3kue_A 3hd2_A* 1f9h_A* 1g4c_A ...
Probab=12.61 E-value=2e+02 Score=23.68 Aligned_cols=40 Identities=13% Similarity=0.115 Sum_probs=30.2
Q ss_pred CceeecCCCC-CCCCceEEEEEecceeccHHHHHHHHHHhc
Q 025506 58 SGVFSCPSGR-NPMYTYRESIVLGKTNFSIFKVNQILRELS 97 (252)
Q Consensus 58 sGIf~~~P~~-tp~~~yresI~LG~T~lt~~e~~~iL~~L~ 97 (252)
+.+++++|-. .....|.-.+...+|.+++.++.+.+.++.
T Consensus 37 S~~y~T~P~G~~~q~~FlN~v~~~~T~l~p~~LL~~l~~IE 77 (158)
T 1f9y_A 37 SSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIE 77 (158)
T ss_dssp CCCEEECCSSCSSSCCEEEEEEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEeCCCCCCCCCCceEEEEEEEeCCCHHHHHHHHHHHH
Confidence 6677777743 334567777777899999999999998764
No 8
>1cbk_A Protein (7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase); transferase; HET: ROI; 2.02A {Haemophilus influenzae} SCOP: d.58.30.1
Probab=12.42 E-value=2e+02 Score=23.68 Aligned_cols=49 Identities=16% Similarity=0.256 Sum_probs=35.3
Q ss_pred CceeecCCCCC-CCCceEEEEEecceeccHHHHHHHHHHhcc--------CCCCCccc
Q 025506 58 SGVFSCPSGRN-PMYTYRESIVLGKTNFSIFKVNQILRELSR--------EWPGNSYD 106 (252)
Q Consensus 58 sGIf~~~P~~t-p~~~yresI~LG~T~lt~~e~~~iL~~L~~--------ew~g~sYd 106 (252)
+.+++.+|-.. ..-.|--.+...+|.+++.++.+.+.++.. .|.+.+-|
T Consensus 38 S~~y~T~P~G~~~q~~FlN~v~~~~T~l~p~~LL~~l~~IE~~~GR~r~~r~gpRtlD 95 (160)
T 1cbk_A 38 SSFYKSKPLGPQDQPDYVNAVAKIETELSPLKLLDELQRIENEQGRVRLRRWGERTLD 95 (160)
T ss_dssp CCCEEECCSSCSSSCCEEEEEEEEEECSCHHHHHHHHHHHHHHTTCCBCSTTSCBSCE
T ss_pred cccEEeCCCCCCCCCCceEEEEEEEeCCCHHHHHHHHHHHHHHcCCCCCCCCCCceee
Confidence 56677777433 235677777778999999999999987752 56666555
No 9
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=12.33 E-value=2.8e+02 Score=22.81 Aligned_cols=51 Identities=22% Similarity=0.239 Sum_probs=32.4
Q ss_pred HHHHHHHH-HHhccCCCCCccccccCcccc---hHHHHHhhcCCC---CCChHHHHHH
Q 025506 86 IFKVNQIL-RELSREWPGNSYDLLGRNCNH---FCDEFCDRLGVP---KLPGWVNRFA 136 (252)
Q Consensus 86 ~~e~~~iL-~~L~~ew~g~sYdLL~rNCNH---FSdalc~~L~Gk---~IP~wInRlA 136 (252)
.+++-+.+ .-+...=....||+-..+.-. |.+.+++.|.-+ ++|.|+.++.
T Consensus 195 v~Dva~a~~~~~~~~~~~g~yn~~~~~~~t~~e~~~~ia~~lgrp~~~pvP~~~~~~~ 252 (298)
T 4b4o_A 195 IGDLAGILTHALEANHVHGVLNGVAPSSATNAEFAQTFGAALGRRAFIPLPSAVVQAV 252 (298)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEESCSCCCBHHHHHHHHHHHHTCCCCCCBCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCeEEEECCCccCHHHHHHHHHHHhCcCCcccCCHHHHHHH
Confidence 45555544 445544344589998776544 556777777533 6899998875
No 10
>1wxa_A Afadin, AF-6 protein; RAS-binding domain, ubiquitin-like fold, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.15.1.5
Probab=11.02 E-value=5.2e+02 Score=19.85 Aligned_cols=52 Identities=15% Similarity=0.146 Sum_probs=34.1
Q ss_pred CceeecCCCCCCCCceEEEEEecceeccHHHHHHHHHHhc-cCCCCCcccccc
Q 025506 58 SGVFSCPSGRNPMYTYRESIVLGKTNFSIFKVNQILRELS-REWPGNSYDLLG 109 (252)
Q Consensus 58 sGIf~~~P~~tp~~~yresI~LG~T~lt~~e~~~iL~~L~-~ew~g~sYdLL~ 109 (252)
.|+..+-|+.---..+.++|.+-..+...+-|.+.|+.+. +.-..+.|-|..
T Consensus 9 ~g~lkIYg~~L~~~~~Yksvlvt~~tta~~vV~eaLekygL~~~~~~~Y~Lve 61 (116)
T 1wxa_A 9 GGTLRIYADSLKPNIPYKTILLSTTDTADFAVAESLEKYGLEKENPKDYCIAR 61 (116)
T ss_dssp CCEEEECCTTTCSSSCCEEEECCSSCCHHHHHHHHHHHHTCSSSCTTTEEEEE
T ss_pred CeEEEEeCCcccCCCceEEEEeCCCCCHHHHHHHHHHHhCCCCCCchheEEEE
Confidence 4555555543222344558999999999999999999876 344455566543
Done!