Query 025506
Match_columns 252
No_of_seqs 143 out of 438
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 11:42:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025506.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025506hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vlpa1 d.41.2.2 (A:1-149) Nic 48.3 1.6 0.00012 34.0 -0.2 43 86-128 50-93 (149)
2 d1qfoa_ b.1.1.1 (A:) N-termina 26.1 22 0.0016 23.2 2.9 34 14-52 76-109 (118)
3 d1yira2 d.41.2.2 (A:4-144) Nic 21.4 8.9 0.00065 29.3 -0.1 41 87-128 53-94 (141)
4 d1wxaa1 d.15.1.5 (A:8-110) Afa 14.9 1.4E+02 0.01 20.2 5.3 37 73-109 17-54 (103)
5 d1ybea2 d.41.2.2 (A:8-167) Nic 13.4 22 0.0016 27.5 0.4 45 86-130 66-116 (160)
6 d2fg9a1 b.45.1.1 (A:1-157) 5-n 11.2 1.6E+02 0.012 20.7 4.8 34 71-104 90-125 (157)
7 d1cbka_ d.58.30.1 (A:) 6-hydro 10.1 1.3E+02 0.0093 22.7 4.0 41 58-98 38-79 (160)
8 d1f9ma_ c.47.1.1 (A:) Thioredo 10.0 44 0.0032 23.0 1.1 63 87-153 41-103 (112)
9 d1fuea_ c.23.5.1 (A:) Flavodox 8.4 62 0.0045 24.1 1.4 20 82-101 144-163 (163)
10 d1f9ya_ d.58.30.1 (A:) 6-hydro 8.0 1.8E+02 0.013 21.8 4.0 40 58-97 37-77 (158)
No 1
>d1vlpa1 d.41.2.2 (A:1-149) Nicotinate phosphoribosyltransferase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=48.29 E-value=1.6 Score=33.98 Aligned_cols=43 Identities=7% Similarity=0.131 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhcc-CCCCCccccccCcccchHHHHHhhcCCCCC
Q 025506 86 IFKVNQILRELSR-EWPGNSYDLLGRNCNHFCDEFCDRLGVPKL 128 (252)
Q Consensus 86 ~~e~~~iL~~L~~-ew~g~sYdLL~rNCNHFSdalc~~L~Gk~I 128 (252)
...+++.|+-|+. +|+.+..+-|+.+|++|.+++.++|-+-+.
T Consensus 50 ~~gl~~~i~~l~~lrFt~eel~yL~~~~~~~~~~fl~~L~~~rF 93 (149)
T d1vlpa1 50 INWLKEQFSYLGNLRFTEEEIEYLKQEIPYLPSAYIKYISSSNY 93 (149)
T ss_dssp HHHHHHHHHHGGGCCCCHHHHHHHHHHCTTSCHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHcCCCCCHHHHHHHHhCCc
Confidence 4678889999986 999999999999999999999999976443
No 2
>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.07 E-value=22 Score=23.18 Aligned_cols=34 Identities=15% Similarity=0.406 Sum_probs=24.7
Q ss_pred CCceEEEEceeecCCccccccccceeeEEEcCceeEEec
Q 025506 14 SNNCSIVFRYFSPYGLNCRGINSLSFTPQVYGDEEWSFG 52 (252)
Q Consensus 14 ~~~~~~~l~~~~~lG~~i~GIGvyHTGVeVyG~~EYsFG 52 (252)
.++++|.|..+.+-.- |+ |+..|+.-|...|.|+
T Consensus 76 ~~~~sL~I~~v~~~Ds---G~--Y~C~v~~~~~~~~~~~ 109 (118)
T d1qfoa_ 76 HKVCNLLLKDLKPEDS---GT--YNFRFEISDSNRWLDV 109 (118)
T ss_dssp GTBCCEEECSCCGGGC---EE--EEEEEECC-CCEEECS
T ss_pred CCEEEEEECCCChhHC---EE--EEEEEEeCCCCeEEcC
Confidence 5788888887766433 45 9999987776678886
No 3
>d1yira2 d.41.2.2 (A:4-144) Nicotinate phosphoribosyltransferase, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=21.42 E-value=8.9 Score=29.25 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcc-CCCCCccccccCcccchHHHHHhhcCCCCC
Q 025506 87 FKVNQILRELSR-EWPGNSYDLLGRNCNHFCDEFCDRLGVPKL 128 (252)
Q Consensus 87 ~e~~~iL~~L~~-ew~g~sYdLL~rNCNHFSdalc~~L~Gk~I 128 (252)
..+++.|+.|+. .|+.+.-+.|+ .|+.|.+++.++|-+=++
T Consensus 53 ~gl~~~i~~l~~lrFt~eei~yL~-~~~~f~~~fldyL~~frf 94 (141)
T d1yira2 53 PAIREQLEYLAGLAISDEQLAFLE-RIPFLAPDFIRFLGLFRF 94 (141)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHH-TSTTSCHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHH-cCCCCCHHHHHHHHhCCC
Confidence 457788888875 89999999996 599999999999976444
No 4
>d1wxaa1 d.15.1.5 (A:8-110) Afadin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.92 E-value=1.4e+02 Score=20.25 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=28.7
Q ss_pred eEEEEEecceeccHHHHHHHHHHhcc-CCCCCcccccc
Q 025506 73 YRESIVLGKTNFSIFKVNQILRELSR-EWPGNSYDLLG 109 (252)
Q Consensus 73 yresI~LG~T~lt~~e~~~iL~~L~~-ew~g~sYdLL~ 109 (252)
..+++.+-.+.-..+-|.++|+.+.- .=.+..|.|..
T Consensus 17 ~yk~l~vs~~tTa~eVI~~~L~k~~l~~~~~~~y~L~e 54 (103)
T d1wxaa1 17 PYKTILLSTTDTADFAVAESLEKYGLEKENPKDYCIAR 54 (103)
T ss_dssp CCEEEECCSSCCHHHHHHHHHHHHTCSSSCTTTEEEEE
T ss_pred CeEEEEECCCCcHHHHHHHHHHHhCCCCCChhhEEEEE
Confidence 34588898889899999999998873 33567888765
No 5
>d1ybea2 d.41.2.2 (A:8-167) Nicotinate phosphoribosyltransferase, N-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}
Probab=13.43 E-value=22 Score=27.47 Aligned_cols=45 Identities=20% Similarity=0.180 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcc-CCCCCccccccCccc-----chHHHHHhhcCCCCCCh
Q 025506 86 IFKVNQILRELSR-EWPGNSYDLLGRNCN-----HFCDEFCDRLGVPKLPG 130 (252)
Q Consensus 86 ~~e~~~iL~~L~~-ew~g~sYdLL~rNCN-----HFSdalc~~L~Gk~IP~ 130 (252)
..++++.|+.|+. .|+.+..+-|+.+|. .|..++.++|-.-+++.
T Consensus 66 ~~gL~~~i~~l~~lrFt~eei~yL~~~~~~~~~~~f~~~fl~~L~~f~f~~ 116 (160)
T d1ybea2 66 EMELREQLDHARTLRLSKKENIWLAGNTFYGRSQIFEPEFLSWLSSYQLPE 116 (160)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHSCSSSCSCCSCHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHhcCCccccCcCCHHHHHHHhcCCCCc
Confidence 3468888888886 899999999999985 49999999997766654
No 6
>d2fg9a1 b.45.1.1 (A:1-157) 5-nitroimidazole resistance protein BT3078 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=11.23 E-value=1.6e+02 Score=20.69 Aligned_cols=34 Identities=15% Similarity=0.293 Sum_probs=27.2
Q ss_pred CceEEEEEecceec--cHHHHHHHHHHhccCCCCCc
Q 025506 71 YTYRESIVLGKTNF--SIFKVNQILRELSREWPGNS 104 (252)
Q Consensus 71 ~~yresI~LG~T~l--t~~e~~~iL~~L~~ew~g~s 104 (252)
..|+..+.-|...+ ++++..++++.|.+.|.+..
T Consensus 90 ~~y~sV~v~G~a~~v~d~~e~~~~~~~l~~k~~~~~ 125 (157)
T d2fg9a1 90 MRSESAMCRGKVEFIEDMEEKRHALDIIMRHYTKDQ 125 (157)
T ss_dssp EEEEEEEEEEECEEECSHHHHHHHHHHHHHTTCSSC
T ss_pred ccEEEEEEEEEEEEEcCHHHHHHHHHHHHHhhCCCC
Confidence 56888888898865 46888899999988887754
No 7
>d1cbka_ d.58.30.1 (A:) 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK {Haemophilus influenzae [TaxId: 727]}
Probab=10.10 E-value=1.3e+02 Score=22.68 Aligned_cols=41 Identities=15% Similarity=0.142 Sum_probs=30.7
Q ss_pred CceeecCCCCCCC-CceEEEEEecceeccHHHHHHHHHHhcc
Q 025506 58 SGVFSCPSGRNPM-YTYRESIVLGKTNFSIFKVNQILRELSR 98 (252)
Q Consensus 58 sGIf~~~P~~tp~-~~yresI~LG~T~lt~~e~~~iL~~L~~ 98 (252)
+-+++++|-..+. -.|--.+...+|.+++.++.+.|..+..
T Consensus 38 S~~y~T~p~g~~~~p~FlN~vv~~~T~l~p~~Ll~~l~~IE~ 79 (160)
T d1cbka_ 38 SSFYKSKPLGPQDQPDYVNAVAKIETELSPLKLLDELQRIEN 79 (160)
T ss_dssp CCCEEECCSSCSSSCCEEEEEEEEEECSCHHHHHHHHHHHHH
T ss_pred cCceEcccccccchhhhhheeEEEEeCCCHHHHHHHHHHHHH
Confidence 5566777754333 3577778888999999999999987654
No 8
>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}
Probab=10.03 E-value=44 Score=22.99 Aligned_cols=63 Identities=19% Similarity=0.280 Sum_probs=44.0
Q ss_pred HHHHHHHHHhccCCCCCccccccCcccchHHHHHhhcCCCCCChHHHHHHhhhhhhhcccchhHHHh
Q 025506 87 FKVNQILRELSREWPGNSYDLLGRNCNHFCDEFCDRLGVPKLPGWVNRFANAGDAAMEVAGTTALRL 153 (252)
Q Consensus 87 ~e~~~iL~~L~~ew~g~sYdLL~rNCNHFSdalc~~L~Gk~IP~wInRlA~iG~~~~~~~~nta~~~ 153 (252)
..+...+++|.++|.. .-++.-||+--..++++.+..+.+|..+.= +-|..+-...|....++
T Consensus 41 ~~~~p~~~~l~~~~~~--v~~~~vd~~~~~~~l~~~~~V~~~Pt~~~~--k~G~~v~~~~G~~~~~l 103 (112)
T d1f9ma_ 41 KAMAPKYEKLAEEYLD--VIFLKLDCNQENKTLAKELGIRVVPTFKIL--KENSVVGEVTGAKYDKL 103 (112)
T ss_dssp HHHHHHHHHHHHHCTT--SEEEEEECSSTTHHHHHHHCCSSSSEEEEE--ETTEEEEEEESSCHHHH
T ss_pred HHHHHHHhhhcccccc--ceeecccccccchhhHhheeeccCCEEEEE--ECCEEEEEEeCCCHHHH
Confidence 4556677888877754 457778887667899999999999997663 45666555555444433
No 9
>d1fuea_ c.23.5.1 (A:) Flavodoxin {Helicobacter pylori [TaxId: 210]}
Probab=8.42 E-value=62 Score=24.14 Aligned_cols=20 Identities=0% Similarity=0.199 Sum_probs=16.8
Q ss_pred eeccHHHHHHHHHHhccCCC
Q 025506 82 TNFSIFKVNQILRELSREWP 101 (252)
Q Consensus 82 T~lt~~e~~~iL~~L~~ew~ 101 (252)
-+++++++++|+++|+.+|.
T Consensus 144 ~~~te~ri~~W~~~lk~ef~ 163 (163)
T d1fuea_ 144 DDLTDERIAKWVEQVRGSFA 163 (163)
T ss_dssp HHHHHHHHHHHHHHHHTTCC
T ss_pred ccccHHHHHHHHHHHHHHhC
Confidence 35678899999999999873
No 10
>d1f9ya_ d.58.30.1 (A:) 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK {Escherichia coli [TaxId: 562]}
Probab=7.99 E-value=1.8e+02 Score=21.79 Aligned_cols=40 Identities=13% Similarity=0.105 Sum_probs=30.3
Q ss_pred CceeecCCCCCC-CCceEEEEEecceeccHHHHHHHHHHhc
Q 025506 58 SGVFSCPSGRNP-MYTYRESIVLGKTNFSIFKVNQILRELS 97 (252)
Q Consensus 58 sGIf~~~P~~tp-~~~yresI~LG~T~lt~~e~~~iL~~L~ 97 (252)
+-++..+|-..+ ...|.-.+.+.+|.+++.++...+..+.
T Consensus 37 S~~y~T~p~g~~~qp~F~N~v~~~~T~l~p~~ll~~l~~IE 77 (158)
T d1f9ya_ 37 SSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIE 77 (158)
T ss_dssp CCCEEECCSSCSSSCCEEEEEEEEEECSCHHHHHHHHHHHH
T ss_pred ecceecccccccccchHhhhhhhhhhccCHHHHHHHHHHHH
Confidence 566777775433 3458778888999999999999988764
Done!