BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025507
(251 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2K2D|A Chain A, Solution Nmr Structure Of C-Terminal Domain Of Human
Pirh2. Northeast Structural Genomics Consortium (Nesg)
Target Ht2c
Length = 79
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 40/65 (61%)
Query: 187 SVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNT 246
S DM++ W + D E+A TPMP Y N V ILCNDC S VQFH+L KC C+SYNT
Sbjct: 7 SALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNT 66
Query: 247 RLTRG 251
G
Sbjct: 67 AQAGG 71
>pdb|2DKT|A Chain A, Solution Structure Of The Chy Zinc Finger Domain Of The
Ring Finger And Chy Zinc Finger Domain-Containing
Protein 1 From Mus Musculus
Length = 143
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 58/121 (47%), Gaps = 11/121 (9%)
Query: 17 APCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVC 76
APCC++++ CR CH D H + R +V +V C C Q QQ C +C
Sbjct: 30 APCCDKLYTCRLCH---------DTNEDHQLDRFKVKEVQCINCEKLQHAQQTCEDCSTL 80
Query: 77 MGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFHCNKCRCCYSMLLKNSHPCVEG 136
GEY+C C LFD D K+QYH +FFHC KC C + L+ H C+E
Sbjct: 81 FGEYYCSICHLFDKD--KRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCIES 138
Query: 137 A 137
Sbjct: 139 G 139
>pdb|2K2C|A Chain A, Solution Nmr Structure Of N-Terminal Domain Of Human
Pirh2. Northeast Structural Genomics Consortium (Nesg)
Target Ht2a
Length = 137
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 58/118 (49%), Gaps = 11/118 (9%)
Query: 17 APCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVC 76
APCC++++ CR CH D H + R +V +V C C Q QQ C C
Sbjct: 31 APCCDKLYTCRLCH---------DNNEDHQLDRFKVKEVQCINCEKIQHAQQTCEECSTL 81
Query: 77 MGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFHCNKCRCCYSMLLKNSHPCV 134
GEY+C+ C LFD D KKQYH +FFHC KC C +M L+ H C+
Sbjct: 82 FGEYYCDICHLFDKD--KKQYHCENCGICRIGPKEDFFHCLKCNLCLAMNLQGRHKCI 137
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 135 EGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKS 187
E +CP+C E + +R VLPCGH +H+ C +EM + Y CP+C S
Sbjct: 1 ENVSQQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK-EGYRCPLCMHS 52
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 40.8 bits (94), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 142 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICS 185
CP+C E + +R VLPCGH +H+ C +EM + Y CP+CS
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK-EGYRCPLCS 50
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 141 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSV 188
+CPVC E + + V LPC H H +C+ E H +CP+C KS+
Sbjct: 17 ECPVCKED-YALGESVRQLPCNHLFHDSCIVPWLEQHD-SCPVCRKSL 62
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 138 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKV 194
+H C VC E F+ R ++ + PC H H+ CL + E + CP+C+ V ++++
Sbjct: 14 LHELCAVCLED-FKPRDELGICPCKHAFHRKCLIKWLEVRK-VCPLCNMPVLQLAQL 68
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 33.9 bits (76), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 141 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH--HQYACPICSK 186
+CP+C E E + +L CGHTI + CL+++ + CP CSK
Sbjct: 17 ECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSK 64
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 141 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKY 198
C +C E L E + LPC HT+ K C + E CP C + V W +Y
Sbjct: 17 QCGICMEILVEP----VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS----WTRY 66
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 150 FETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC 184
FE+RQ + VLPC H H C+ + + ++ CPIC
Sbjct: 33 FESRQLLRVLPCNHEFHAKCVDKWLKANR-TCPIC 66
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 133 CVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC 184
C G+ C +C E +DV + PCGH + +CL +E CP C
Sbjct: 328 CEMGSTFQLCKICAE----NDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 375
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 133 CVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC 184
C G+ C +C E +DV + PCGH + +CL +E CP C
Sbjct: 326 CEMGSTFQLCKICAE----NDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 373
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 133 CVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC 184
C G+ C +C E +DV + PCGH + +CL +E CP C
Sbjct: 328 CEMGSTFQLCKICAE----NDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 375
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 133 CVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC 184
C G+ C +C E +DV + PCGH + +CL +E CP C
Sbjct: 326 CEMGSTFQLCKICAE----NDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 373
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 133 CVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC 184
C G+ C +C E +DV + PCGH + +CL +E CP C
Sbjct: 18 CEMGSTFQLCKICAE----NDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 65
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 133 CVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC 184
C G+ C +C E +DV + PCGH + +CL +E CP C
Sbjct: 21 CEMGSTFQLCKICAE----NDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 68
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 133 CVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC 184
C G+ C +C E +DV + PCGH + +CL +E CP C
Sbjct: 332 CEMGSTFQLCKICAE----NDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFC 379
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 133 CVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC 184
C G+ C +C E +DV + PCGH + +CL +E CP C
Sbjct: 20 CEMGSTFQLCKICAE----NDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFC 67
>pdb|2YJZ|A Chain A, Rat Steap4 Oxidoreductase Domain Complexed With Nadp
pdb|2YJZ|B Chain B, Rat Steap4 Oxidoreductase Domain Complexed With Nadp
pdb|2YJZ|C Chain C, Rat Steap4 Oxidoreductase Domain Complexed With Nadp
pdb|2YJZ|D Chain D, Rat Steap4 Oxidoreductase Domain Complexed With Nadp
Length = 201
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 119 CRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMRE 175
+C YS++ + +P V + V C +R DVIVL H H + L E+ +
Sbjct: 39 LQCGYSVVFGSRNPQVSSLLPRGAEVLCYSEAASRSDVIVLAV-HREHYDFLAELAD 94
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 128 KNSHPCVEGAMHHDCPVCCEYLFETRQD---VIVLPCGHTIHKNCLKEMREHHQYACPIC 184
K HP G+ CP+C + E Q+ ++ CGH CL++ ++ CP C
Sbjct: 61 KRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTC 119
Query: 185 SKSV 188
K +
Sbjct: 120 RKKI 123
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 138 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMRE--HHQYACPIC 184
+ C VC EYL ++ +++ CGH K C+ E + CP+C
Sbjct: 14 VEASCSVCLEYL----KEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|3EXQ|A Chain A, Crystal Structure Of A Nudix Family Hydrolase From
Lactobacillus Brevis
Length = 161
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 35 NNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCM-GEYFCESCKLFDDD 91
+ +NV K H P V + C T +++V G+ + G FC +C+ FDDD
Sbjct: 29 DKVNVPWKAGHSFPGGHVE--VGEPCAT-AAIREVFEETGLRLSGVTFCGTCEWFDDD 83
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 9/51 (17%)
Query: 142 CPVCCEYLFETRQDVIVLPCGHTIHKNCL-----KEMREHHQYACPICSKS 187
CP+C E L + + L CGH+ + CL K M + + +CP+C S
Sbjct: 22 CPICLELLTQP----LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRIS 68
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 142 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH--QYACPICSKSV 188
CP+C + L Q + + CGH C+ ++ E + CP+C SV
Sbjct: 23 CPICLDIL----QKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSV 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.137 0.485
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,993,473
Number of Sequences: 62578
Number of extensions: 250454
Number of successful extensions: 839
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 815
Number of HSP's gapped (non-prelim): 46
length of query: 251
length of database: 14,973,337
effective HSP length: 96
effective length of query: 155
effective length of database: 8,965,849
effective search space: 1389706595
effective search space used: 1389706595
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)