Query 025507
Match_columns 251
No_of_seqs 274 out of 1532
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 11:44:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025507.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025507hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dkt_A Ring finger and CHY zin 100.0 3E-55 1E-59 360.9 11.0 128 2-140 15-142 (143)
2 2k2d_A Ring finger and CHY zin 99.9 1.6E-27 5.5E-32 178.6 1.8 71 181-251 1-71 (79)
3 2ecm_A Ring finger and CHY zin 99.4 1.6E-13 5.6E-18 93.3 4.8 52 137-189 3-54 (55)
4 2ecl_A Ring-box protein 2; RNF 99.4 2.3E-13 7.7E-18 101.0 5.2 52 138-190 25-76 (81)
5 1iym_A EL5; ring-H2 finger, ub 99.3 1.3E-12 4.3E-17 89.0 4.3 49 139-189 5-54 (55)
6 2kiz_A E3 ubiquitin-protein li 99.3 1.8E-12 6E-17 92.3 4.6 53 136-190 11-63 (69)
7 2ep4_A Ring finger protein 24; 99.3 1.4E-12 4.9E-17 94.0 3.9 55 135-191 11-65 (74)
8 1x4j_A Ring finger protein 38; 99.3 1.2E-12 4.2E-17 94.8 2.7 52 137-190 21-72 (75)
9 1v87_A Deltex protein 2; ring- 99.3 3.5E-12 1.2E-16 99.2 4.6 54 137-190 23-94 (114)
10 2ect_A Ring finger protein 126 99.2 4.9E-12 1.7E-16 92.1 4.6 51 138-190 14-64 (78)
11 2l0b_A E3 ubiquitin-protein li 99.2 4.6E-12 1.6E-16 95.6 3.9 51 138-190 39-89 (91)
12 1g25_A CDK-activating kinase a 99.2 1E-11 3.5E-16 87.6 5.3 52 139-190 3-55 (65)
13 3ng2_A RNF4, snurf, ring finge 99.2 5E-12 1.7E-16 90.0 3.5 53 137-190 8-63 (71)
14 2ea6_A Ring finger protein 4; 99.2 6.1E-12 2.1E-16 88.8 3.9 52 137-189 13-67 (69)
15 3dpl_R Ring-box protein 1; ubi 99.2 1.4E-11 4.7E-16 96.5 5.6 52 137-189 46-100 (106)
16 2xeu_A Ring finger protein 4; 99.2 9.5E-12 3.3E-16 86.5 3.5 51 139-190 3-56 (64)
17 1chc_A Equine herpes virus-1 r 99.2 1.6E-11 5.5E-16 86.9 3.5 50 138-191 4-53 (68)
18 2ct2_A Tripartite motif protei 99.2 3E-11 1E-15 89.2 5.1 53 138-190 14-68 (88)
19 1e4u_A Transcriptional repress 99.1 6.2E-12 2.1E-16 93.2 -0.2 57 138-196 10-68 (78)
20 1t1h_A Gspef-atpub14, armadill 99.1 1E-10 3.5E-15 85.0 6.0 48 138-189 7-54 (78)
21 2csy_A Zinc finger protein 183 99.1 4.5E-11 1.5E-15 87.7 4.0 47 138-189 14-60 (81)
22 2d8t_A Dactylidin, ring finger 99.1 4.2E-11 1.4E-15 85.9 3.3 49 137-190 13-61 (71)
23 2djb_A Polycomb group ring fin 99.1 5.9E-11 2E-15 85.3 3.5 49 138-190 14-62 (72)
24 2ysl_A Tripartite motif-contai 99.1 1.1E-10 3.7E-15 83.6 4.8 50 137-190 18-69 (73)
25 2ecn_A Ring finger protein 141 99.1 1.2E-11 4.1E-16 88.2 -0.7 49 137-191 13-61 (70)
26 2ecy_A TNF receptor-associated 99.1 7.9E-11 2.7E-15 83.2 3.4 48 139-190 15-62 (66)
27 2yur_A Retinoblastoma-binding 99.0 6.8E-11 2.3E-15 85.6 2.7 50 139-192 15-66 (74)
28 3lrq_A E3 ubiquitin-protein li 99.0 1.3E-10 4.6E-15 89.0 4.2 49 139-190 22-70 (100)
29 4ap4_A E3 ubiquitin ligase RNF 99.0 1.5E-10 5E-15 91.0 3.7 52 138-190 6-60 (133)
30 4ayc_A E3 ubiquitin-protein li 99.0 2E-10 6.8E-15 92.8 3.6 46 140-190 54-99 (138)
31 3fl2_A E3 ubiquitin-protein li 99.0 5.5E-10 1.9E-14 88.3 5.7 48 139-190 52-99 (124)
32 2ysj_A Tripartite motif-contai 99.0 4E-10 1.4E-14 78.7 4.3 43 138-184 19-63 (63)
33 4a0k_B E3 ubiquitin-protein li 99.0 7.9E-11 2.7E-15 93.9 0.5 51 138-189 47-111 (117)
34 2ecw_A Tripartite motif-contai 98.9 8E-10 2.7E-14 80.5 4.9 49 138-190 18-71 (85)
35 2ecj_A Tripartite motif-contai 98.9 5.8E-10 2E-14 76.1 3.6 43 138-184 14-58 (58)
36 2egp_A Tripartite motif-contai 98.9 1.7E-10 5.9E-15 83.6 0.9 49 138-190 11-65 (79)
37 3ztg_A E3 ubiquitin-protein li 98.9 6.8E-10 2.3E-14 83.0 4.0 48 138-189 12-61 (92)
38 2d8s_A Cellular modulator of i 98.9 7.3E-10 2.5E-14 82.4 4.0 53 136-190 12-70 (80)
39 2y43_A E3 ubiquitin-protein li 98.9 7.3E-10 2.5E-14 84.1 3.9 48 139-190 22-69 (99)
40 1rmd_A RAG1; V(D)J recombinati 98.9 6E-10 2E-14 87.0 3.2 48 139-190 23-70 (116)
41 2ecv_A Tripartite motif-contai 98.9 9.6E-10 3.3E-14 80.1 4.1 49 138-190 18-71 (85)
42 2ckl_A Polycomb group ring fin 98.9 1E-09 3.4E-14 84.7 4.2 48 139-190 15-62 (108)
43 2ckl_B Ubiquitin ligase protei 98.9 1.3E-09 4.4E-14 90.2 4.3 48 139-189 54-101 (165)
44 3l11_A E3 ubiquitin-protein li 98.8 5E-10 1.7E-14 87.3 1.2 48 139-190 15-62 (115)
45 4ap4_A E3 ubiquitin ligase RNF 98.8 1.4E-09 4.7E-14 85.4 2.9 53 137-190 70-125 (133)
46 1z6u_A NP95-like ring finger p 98.8 2.2E-09 7.4E-14 88.4 4.3 48 139-190 78-125 (150)
47 3hct_A TNF receptor-associated 98.8 1.8E-09 6.3E-14 84.7 3.0 48 139-190 18-65 (118)
48 1jm7_A BRCA1, breast cancer ty 98.8 2.7E-09 9.3E-14 82.1 3.3 47 139-189 21-69 (112)
49 2vje_A E3 ubiquitin-protein li 98.7 4.9E-09 1.7E-13 74.3 3.2 51 136-191 5-58 (64)
50 1bor_A Transcription factor PM 98.6 4.8E-09 1.6E-13 72.2 1.0 45 137-189 4-48 (56)
51 1jm7_B BARD1, BRCA1-associated 98.6 1.4E-08 4.8E-13 79.5 3.4 44 139-189 22-66 (117)
52 2vje_B MDM4 protein; proto-onc 98.6 1.1E-08 3.8E-13 72.2 2.5 52 137-191 5-57 (63)
53 2kr4_A Ubiquitin conjugation f 98.6 1.9E-08 6.6E-13 75.0 3.8 47 138-189 13-59 (85)
54 2c2l_A CHIP, carboxy terminus 98.6 4.2E-08 1.4E-12 85.8 6.1 50 136-189 205-254 (281)
55 3knv_A TNF receptor-associated 98.6 7.1E-09 2.4E-13 84.5 0.7 46 139-188 31-76 (141)
56 4ic3_A E3 ubiquitin-protein li 98.6 1.2E-08 4.1E-13 74.0 1.6 43 139-190 24-67 (74)
57 2ct0_A Non-SMC element 1 homol 98.6 3.8E-08 1.3E-12 72.3 4.2 49 139-190 15-64 (74)
58 2kre_A Ubiquitin conjugation f 98.6 3E-08 1E-12 76.4 3.7 47 138-189 28-74 (100)
59 1wgm_A Ubiquitin conjugation f 98.5 5E-08 1.7E-12 74.9 4.3 47 138-189 21-68 (98)
60 3hcs_A TNF receptor-associated 98.5 3.7E-08 1.3E-12 81.6 3.3 48 139-190 18-65 (170)
61 2yu4_A E3 SUMO-protein ligase 98.5 1.6E-07 5.5E-12 71.1 5.8 46 138-187 6-59 (94)
62 2y1n_A E3 ubiquitin-protein li 98.5 1E-07 3.4E-12 89.8 4.7 49 138-190 331-379 (389)
63 1wim_A KIAA0161 protein; ring 98.4 2.8E-07 9.6E-12 69.3 5.1 49 138-187 4-61 (94)
64 2ea5_A Cell growth regulator w 98.4 2.1E-07 7E-12 66.8 3.6 46 137-191 13-59 (68)
65 2ecg_A Baculoviral IAP repeat- 98.4 8.3E-08 2.8E-12 69.5 1.2 43 139-190 25-68 (75)
66 1vyx_A ORF K3, K3RING; zinc-bi 98.3 2.6E-07 8.9E-12 65.0 3.1 51 135-189 2-58 (60)
67 2f42_A STIP1 homology and U-bo 98.3 7.1E-07 2.4E-11 75.8 5.9 48 138-189 105-152 (179)
68 2yho_A E3 ubiquitin-protein li 98.2 2.8E-07 9.6E-12 67.9 1.6 44 139-191 18-62 (79)
69 3htk_C E3 SUMO-protein ligase 98.0 3.3E-06 1.1E-10 75.7 4.5 50 137-189 179-231 (267)
70 3k1l_B Fancl; UBC, ring, RWD, 98.0 9.8E-07 3.4E-11 82.0 0.7 54 136-189 305-372 (381)
71 3t6p_A Baculoviral IAP repeat- 97.8 4.1E-06 1.4E-10 77.6 1.4 43 139-190 295-338 (345)
72 3vk6_A E3 ubiquitin-protein li 97.7 2.1E-05 7.3E-10 60.8 3.9 49 141-192 3-51 (101)
73 2bay_A PRE-mRNA splicing facto 97.5 5.2E-05 1.8E-09 53.1 3.1 47 139-190 3-50 (61)
74 3nw0_A Non-structural maintena 96.0 0.0039 1.3E-07 54.8 3.7 49 139-190 180-229 (238)
75 2jrp_A Putative cytoplasmic pr 93.6 0.033 1.1E-06 41.3 2.3 29 55-88 32-60 (81)
76 2lbm_A Transcriptional regulat 92.6 0.16 5.4E-06 41.3 5.1 50 134-187 58-117 (142)
77 2jun_A Midline-1; B-BOX, TRIM, 92.4 0.057 1.9E-06 40.2 2.1 33 139-173 3-36 (101)
78 2ysm_A Myeloid/lymphoid or mix 88.9 0.14 4.8E-06 39.1 1.5 82 101-187 9-104 (111)
79 3a43_A HYPD, hydrogenase nicke 87.9 0.18 6.2E-06 40.5 1.6 37 215-251 68-123 (139)
80 2ko5_A Ring finger protein Z; 86.5 0.26 9E-06 37.5 1.6 45 139-190 28-73 (99)
81 3v43_A Histone acetyltransfera 86.2 0.15 5.2E-06 39.3 0.2 74 109-186 22-111 (112)
82 2kdx_A HYPA, hydrogenase/ureas 84.2 0.45 1.5E-05 36.9 2.1 35 215-251 71-106 (119)
83 2lri_C Autoimmune regulator; Z 81.1 1.2 4E-05 31.3 3.1 46 138-187 11-59 (66)
84 2kwj_A Zinc finger protein DPF 80.6 0.12 4.3E-06 39.9 -2.4 83 100-187 2-108 (114)
85 3ql9_A Transcriptional regulat 78.0 2.3 7.9E-05 33.8 4.2 50 134-187 52-111 (129)
86 1weo_A Cellulose synthase, cat 77.6 3.8 0.00013 30.8 5.0 56 134-189 11-69 (93)
87 2ysm_A Myeloid/lymphoid or mix 75.6 3.1 0.00011 31.5 4.2 69 53-125 6-81 (111)
88 4bbq_A Lysine-specific demethy 71.3 0.73 2.5E-05 35.2 -0.3 29 158-186 78-113 (117)
89 2jne_A Hypothetical protein YF 71.2 2 6.9E-05 32.8 2.1 9 78-86 80-88 (101)
90 1we9_A PHD finger family prote 67.9 0.81 2.8E-05 31.4 -0.7 50 138-187 5-58 (64)
91 2l5u_A Chromodomain-helicase-D 65.5 3.2 0.00011 28.3 2.1 47 136-186 8-57 (61)
92 2dkt_A Ring finger and CHY zin 61.8 2.6 8.7E-05 34.2 1.1 32 77-108 96-127 (143)
93 1f62_A Transcription factor WS 60.5 5.1 0.00017 26.0 2.3 45 141-187 2-50 (51)
94 2k4x_A 30S ribosomal protein S 59.0 6.7 0.00023 26.5 2.7 21 66-86 17-43 (55)
95 1mm2_A MI2-beta; PHD, zinc fin 58.5 2.5 8.7E-05 28.8 0.5 48 137-188 7-57 (61)
96 3j20_Y 30S ribosomal protein S 56.9 5.3 0.00018 26.5 1.8 10 66-75 18-27 (50)
97 2e6s_A E3 ubiquitin-protein li 53.9 6.8 0.00023 28.1 2.2 65 110-186 7-76 (77)
98 3u5n_A E3 ubiquitin-protein li 49.9 4 0.00014 34.2 0.4 47 136-187 4-54 (207)
99 2k16_A Transcription initiatio 49.3 4.2 0.00014 28.6 0.4 46 140-188 19-69 (75)
100 2kgg_A Histone demethylase jar 42.5 6.2 0.00021 25.9 0.4 45 141-185 4-52 (52)
101 1wen_A Inhibitor of growth fam 42.0 17 0.00056 25.6 2.6 44 138-188 15-66 (71)
102 2lv9_A Histone-lysine N-methyl 41.8 25 0.00086 26.0 3.8 48 140-191 29-80 (98)
103 3u5c_f 40S ribosomal protein S 41.0 13 0.00045 29.9 2.2 23 65-87 116-146 (152)
104 3lqh_A Histone-lysine N-methyl 41.0 13 0.00045 31.0 2.2 50 140-190 3-66 (183)
105 2yql_A PHD finger protein 21A; 40.6 2.5 8.5E-05 28.2 -1.9 46 137-186 7-55 (56)
106 3o36_A Transcription intermedi 40.4 7.8 0.00027 31.7 0.8 45 139-187 4-51 (184)
107 2pv0_B DNA (cytosine-5)-methyl 40.3 20 0.00069 33.4 3.6 69 116-188 70-149 (386)
108 1wep_A PHF8; structural genomi 39.5 19 0.00066 25.4 2.7 49 139-188 12-64 (79)
109 3i2d_A E3 SUMO-protein ligase 39.4 26 0.0009 32.5 4.2 48 139-189 249-299 (371)
110 4fo9_A E3 SUMO-protein ligase 38.2 29 0.00099 32.0 4.3 47 140-189 216-265 (360)
111 3uk3_C Zinc finger protein 217 36.9 44 0.0015 20.3 3.9 15 178-192 4-18 (57)
112 1ryq_A DNA-directed RNA polyme 36.4 19 0.00064 25.6 2.1 25 51-76 8-32 (69)
113 1fp0_A KAP-1 corepressor; PHD 35.6 13 0.00044 27.6 1.2 47 137-187 23-72 (88)
114 2puy_A PHD finger protein 21A; 35.2 5.6 0.00019 26.8 -0.8 46 137-186 3-51 (60)
115 2ayj_A 50S ribosomal protein L 34.5 46 0.0016 22.7 3.7 28 49-76 14-42 (56)
116 1zfo_A LAsp-1; LIM domain, zin 34.0 13 0.00044 21.8 0.8 30 138-170 2-31 (31)
117 3mjh_B Early endosome antigen 34.0 18 0.00063 22.1 1.5 14 179-192 6-19 (34)
118 3a1b_A DNA (cytosine-5)-methyl 34.0 17 0.00057 29.9 1.7 64 119-187 59-134 (159)
119 2egq_A FHL1 protein; LIM domai 33.7 36 0.0012 23.1 3.3 42 138-190 14-58 (77)
120 2dmd_A Zinc finger protein 64, 33.5 35 0.0012 23.2 3.3 15 111-125 62-76 (96)
121 2fiy_A Protein FDHE homolog; F 33.2 28 0.00096 31.3 3.3 26 52-77 206-232 (309)
122 1weu_A Inhibitor of growth fam 32.2 17 0.00059 26.9 1.4 44 138-188 35-86 (91)
123 1xwh_A Autoimmune regulator; P 32.0 5.5 0.00019 27.4 -1.3 46 137-186 6-54 (66)
124 2jvx_A NF-kappa-B essential mo 31.8 14 0.00049 21.6 0.7 16 178-193 3-18 (28)
125 2jrp_A Putative cytoplasmic pr 31.6 34 0.0012 24.9 2.9 26 54-79 18-43 (81)
126 1vq8_Z 50S ribosomal protein L 31.5 18 0.00063 26.4 1.4 33 66-109 26-58 (83)
127 3v43_A Histone acetyltransfera 31.1 31 0.0011 26.0 2.8 26 160-185 31-62 (112)
128 2l43_A N-teminal domain from h 30.8 15 0.00053 26.8 1.0 50 138-188 24-76 (88)
129 4ayb_P DNA-directed RNA polyme 29.4 29 0.00098 22.9 1.9 10 95-104 22-31 (48)
130 1x4s_A Protein FON, zinc finge 29.3 19 0.00066 24.8 1.2 24 53-76 10-35 (59)
131 1twf_L ABC10-alpha, DNA-direct 29.1 28 0.00095 24.6 2.0 8 97-104 46-53 (70)
132 2ct0_A Non-SMC element 1 homol 29.0 31 0.0011 24.4 2.3 30 48-77 9-38 (74)
133 1klr_A Zinc finger Y-chromosom 29.0 51 0.0017 16.6 2.8 16 178-193 2-17 (30)
134 3lpe_B DNA-directed RNA polyme 29.0 22 0.00077 24.3 1.4 19 56-75 3-21 (59)
135 1bbo_A Human enhancer-binding 28.6 42 0.0015 20.4 2.7 13 179-191 2-14 (57)
136 3o70_A PHD finger protein 13; 28.5 8.6 0.00029 26.8 -0.8 49 137-187 17-67 (68)
137 1vd4_A Transcription initiatio 28.2 37 0.0013 21.8 2.5 10 69-78 16-25 (62)
138 2yt5_A Metal-response element- 28.1 34 0.0011 23.0 2.3 27 77-103 4-30 (66)
139 3f6q_B LIM and senescent cell 27.8 34 0.0012 22.5 2.3 42 138-190 10-51 (72)
140 3v2d_5 50S ribosomal protein L 27.7 25 0.00086 24.1 1.5 29 216-249 29-57 (60)
141 2drp_A Protein (tramtrack DNA- 27.1 11 0.00039 24.1 -0.3 9 95-103 39-47 (66)
142 2xzm_9 RPS31E; ribosome, trans 26.2 24 0.00082 29.6 1.4 22 67-88 113-140 (189)
143 2zjr_Z 50S ribosomal protein L 25.7 38 0.0013 23.2 2.1 29 216-249 29-57 (60)
144 2gmg_A Hypothetical protein PF 25.1 39 0.0013 25.9 2.3 33 215-248 65-97 (105)
145 1znf_A 31ST zinc finger from X 24.9 52 0.0018 16.3 2.3 14 179-192 2-15 (27)
146 1x4l_A Skeletal muscle LIM-pro 24.9 37 0.0013 22.7 2.0 41 139-190 5-47 (72)
147 2ro1_A Transcription intermedi 24.8 17 0.00057 30.1 0.2 45 139-187 2-49 (189)
148 3shb_A E3 ubiquitin-protein li 24.5 1.1E+02 0.0037 21.7 4.5 13 111-123 39-51 (77)
149 1wil_A KIAA1045 protein; ring 24.3 45 0.0015 24.7 2.4 32 137-173 13-47 (89)
150 4gzn_C ZFP-57, zinc finger pro 24.2 30 0.001 22.9 1.4 13 179-191 5-17 (60)
151 4esj_A Type-2 restriction enzy 24.2 34 0.0011 30.1 2.0 19 68-86 35-63 (257)
152 2g45_A Ubiquitin carboxyl-term 24.1 8.1 0.00028 30.5 -1.8 24 219-245 36-61 (129)
153 2ku3_A Bromodomain-containing 23.9 68 0.0023 22.3 3.3 49 136-185 13-64 (71)
154 1wew_A DNA-binding family prot 23.9 16 0.00054 25.9 -0.1 48 138-189 15-74 (78)
155 2vpb_A Hpygo1, pygopus homolog 23.7 46 0.0016 22.8 2.3 35 138-172 7-42 (65)
156 1qyp_A RNA polymerase II; tran 23.6 40 0.0014 22.2 1.9 32 68-103 16-50 (57)
157 4gut_A Lysine-specific histone 23.6 1.2E+02 0.0042 30.2 6.3 88 130-225 4-103 (776)
158 2yqq_A Zinc finger HIT domain- 23.4 39 0.0013 22.9 1.8 16 70-86 15-30 (56)
159 2cup_A Skeletal muscle LIM-pro 23.3 23 0.00077 25.4 0.7 32 137-170 64-95 (101)
160 1ptq_A Protein kinase C delta 23.2 49 0.0017 20.7 2.2 11 93-103 25-35 (50)
161 1ard_A Yeast transcription fac 23.1 64 0.0022 16.1 2.5 15 178-192 2-16 (29)
162 2m0e_A Zinc finger and BTB dom 22.5 72 0.0024 15.8 2.6 16 178-193 2-17 (29)
163 2v3b_B Rubredoxin 2, rubredoxi 22.4 51 0.0018 22.0 2.3 12 77-88 1-12 (55)
164 1rim_A E6APC2 peptide; E6-bind 21.9 87 0.003 16.8 3.0 16 178-193 2-17 (33)
165 3m62_A Ubiquitin conjugation f 21.6 75 0.0026 33.0 4.3 48 137-189 889-937 (968)
166 1x5w_A Zinc finger protein 64, 21.0 44 0.0015 21.5 1.7 31 178-208 37-67 (70)
167 1v5n_A PDI-like hypothetical p 20.7 46 0.0016 24.2 1.9 11 111-121 59-69 (89)
168 2fnf_X Putative RAS effector N 20.6 60 0.0021 22.6 2.4 21 81-104 37-57 (72)
169 1rfh_A RAS association (ralgds 20.6 75 0.0026 21.0 2.8 11 94-104 34-44 (59)
170 3h0g_I DNA-directed RNA polyme 20.5 99 0.0034 23.3 3.9 33 67-103 72-107 (113)
171 2adr_A ADR1; transcription reg 20.5 64 0.0022 19.8 2.4 13 179-191 3-15 (60)
172 3h0g_L DNA-directed RNA polyme 20.3 52 0.0018 22.8 2.0 11 94-104 36-46 (63)
173 1p7a_A BF3, BKLF, kruppel-like 20.3 56 0.0019 17.8 1.9 15 178-192 11-25 (37)
174 2kmk_A Zinc finger protein GFI 20.3 91 0.0031 20.1 3.3 41 177-228 28-68 (82)
175 1wem_A Death associated transc 20.2 25 0.00086 24.5 0.3 47 139-187 16-70 (76)
No 1
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=100.00 E-value=3e-55 Score=360.92 Aligned_cols=128 Identities=43% Similarity=1.068 Sum_probs=123.2
Q ss_pred CccCCccccccceeecCcCCCeecCcchhhhhccCcCcCcCCCCCCCCcccceeecCCCCccccccccCcCCCCccceEe
Q 025507 2 ITCRCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYF 81 (251)
Q Consensus 2 ~~~gC~HY~r~c~i~~pcC~~~y~Cr~CHde~~~~~~~~~~~~H~~~r~~~~~v~C~~C~~~q~~~~~C~~Cg~~f~~y~ 81 (251)
.++||+||+|+|+|+||||++|||||+||||+ ++|+++|+++++|+||.|+++|++++.|++||+.||+||
T Consensus 15 ~~~gC~HY~r~~~lr~pCC~k~y~Cr~CHde~---------~dH~l~r~~~~~vlCg~C~~~q~~~~~C~~Cg~~f~~Y~ 85 (143)
T 2dkt_A 15 GPRGCEHYDRACLLKAPCCDKLYTCRLCHDTN---------EDHQLDRFKVKEVQCINCEKLQHAQQTCEDCSTLFGEYY 85 (143)
T ss_dssp CSSSCSSCCCSEEEEETTTTEEESSHHHHHHT---------SSSCCCSSSCCCEEESSSCCEECSCSBCSSSCCBSCSEE
T ss_pred CcCCCcccCCCeeEECCCCCCccchhhhhccc---------cccccchhccceeeecccCccccccCcCCCCCccceeeE
Confidence 36899999999999999999999999999997 599999999999999999999999999999999999999
Q ss_pred cCccccccCCCCCCeeecCCCCcceecCCcceeeccCCCcceeccccccccccCCCCCC
Q 025507 82 CESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHH 140 (251)
Q Consensus 82 C~~C~~~d~~~~k~~~HC~~CgiCR~g~~~~~fHC~~C~~c~~~~l~~~H~C~e~~~~~ 140 (251)
|+|||||| ++|+|||||+|||||+|+++|||||++||+||+++|+++|+|+|+++++
T Consensus 86 C~~C~l~d--~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~e~~~~s 142 (143)
T 2dkt_A 86 CSICHLFD--KDKRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCIESGPSS 142 (143)
T ss_dssp CSSSCCEE--CSSSEEEETTTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCSCCCSCC
T ss_pred eceeeccc--CCCceecCCCCCceeccCCcCcEECCcCCeeeccccCcCcccCccCccC
Confidence 99999997 4699999999999999999999999999999999999999999999864
No 2
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=99.93 E-value=1.6e-27 Score=178.59 Aligned_cols=71 Identities=48% Similarity=0.832 Sum_probs=38.0
Q ss_pred CCCCCcCccchhHHHHHHHHHHhcCCCCHhhhcCceeEEcCCCCCCccccceeeeccCCCCCCccccccCC
Q 025507 181 CPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG 251 (251)
Q Consensus 181 CP~Cr~~~~~~~~~~~~ld~~i~~~p~P~e~~~~~~~IlCndC~~~s~~~~h~lg~kC~~C~SyNT~~~~~ 251 (251)
||+|+|++.||+.+|++||++|+++|||++|++++++|+||||+++|.++||||||||+.|+||||++++|
T Consensus 1 ~~~c~ks~~dm~~~~~~lD~~ia~~pmP~~y~~~~v~I~CnDC~~~s~v~~h~lg~kC~~C~SyNTr~~~G 71 (79)
T 2k2d_A 1 GSHMMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNTAQAGG 71 (79)
T ss_dssp --------------------------------CCEEEEEESSSCCEEEEECCTTCCCCTTTSCCCEEESCC
T ss_pred CCcccccHHHHHHHHHHHHHHHHhCCCCHHHhCCEeEEECCCCCCCccCCceeecccCcCCCCcCeEecCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999875
No 3
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.41 E-value=1.6e-13 Score=93.28 Aligned_cols=52 Identities=38% Similarity=0.911 Sum_probs=45.1
Q ss_pred CCCCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCcc
Q 025507 137 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 189 (251)
Q Consensus 137 ~~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~ 189 (251)
+.+..||||++.+.++...+++++|||.||.+||.+|++.. .+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 45679999999876766678899999999999999999864 89999998764
No 4
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=2.3e-13 Score=100.97 Aligned_cols=52 Identities=19% Similarity=0.436 Sum_probs=40.4
Q ss_pred CCCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCccc
Q 025507 138 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 190 (251)
Q Consensus 138 ~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~~ 190 (251)
++..|+||++++..+...+++++|||.||.+||.+||+. +.+||+||+++..
T Consensus 25 ~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 25 VMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV 76 (81)
T ss_dssp TTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred hhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence 356799999875554434444569999999999999985 5799999998753
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.31 E-value=1.3e-12 Score=88.96 Aligned_cols=49 Identities=31% Similarity=0.739 Sum_probs=40.7
Q ss_pred CCCCcchhhhcccCCceeEEcC-CCCcccHHHHHHHHhcCCCCCCCCCcCcc
Q 025507 139 HHDCPVCCEYLFETRQDVIVLP-CGHTIHKNCLKEMREHHQYACPICSKSVC 189 (251)
Q Consensus 139 ~~~CpICle~lf~s~~~~~~lp-CgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~ 189 (251)
+..|+||++.+. +++.++.++ |||.||.+||.+|++. +.+||+||+++.
T Consensus 5 ~~~C~IC~~~~~-~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAELE-DGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCCCC-TTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCcCccCCcccc-CCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 568999999654 445577786 9999999999999985 689999998764
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.29 E-value=1.8e-12 Score=92.31 Aligned_cols=53 Identities=28% Similarity=0.659 Sum_probs=44.0
Q ss_pred CCCCCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCccc
Q 025507 136 GAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 190 (251)
Q Consensus 136 ~~~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~~ 190 (251)
...+..|+||++. +.....++.+||||.||..||.+|++. +.+||+||..+..
T Consensus 11 ~~~~~~C~IC~~~-~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSI-LEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBC-CCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred CCCCCCCeeCCcc-ccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence 3456789999995 444556888999999999999999985 4789999988764
No 7
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.4e-12 Score=93.99 Aligned_cols=55 Identities=35% Similarity=0.800 Sum_probs=45.6
Q ss_pred CCCCCCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCccch
Q 025507 135 EGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDM 191 (251)
Q Consensus 135 e~~~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~~~ 191 (251)
+...+..|+||++. +.....+++|||||.||..||.+|++. +.+||+||+++..+
T Consensus 11 ~~~~~~~C~IC~~~-~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 11 ELNLHELCAVCLED-FKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCSCBCSSSCCB-CCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSC
T ss_pred cCCCCCCCcCCCcc-cCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCcccccc
Confidence 34557899999996 555566778899999999999999986 46999999988764
No 8
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=1.2e-12 Score=94.83 Aligned_cols=52 Identities=35% Similarity=0.715 Sum_probs=43.9
Q ss_pred CCCCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCccc
Q 025507 137 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 190 (251)
Q Consensus 137 ~~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~~ 190 (251)
..+..|+||++. +..+..++.|||||.||..||.+|++. +.+||+||+++..
T Consensus 21 ~~~~~C~IC~~~-~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCD-FESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEE-CCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCeECCcc-cCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 346789999996 555667788999999999999999985 5799999998865
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.25 E-value=3.5e-12 Score=99.21 Aligned_cols=54 Identities=28% Similarity=0.491 Sum_probs=41.8
Q ss_pred CCCCCCcchhhhcccCC--------------ceeEEcCCCCcccHHHHHHHHhc----CCCCCCCCCcCccc
Q 025507 137 AMHHDCPVCCEYLFETR--------------QDVIVLPCGHTIHKNCLKEMREH----HQYACPICSKSVCD 190 (251)
Q Consensus 137 ~~~~~CpICle~lf~s~--------------~~~~~lpCgH~fH~~Ci~~wl~~----~~~~CP~Cr~~~~~ 190 (251)
..+..||||+++|.... ..+++++|||.||.+||..|+.. .+.+||+||..+..
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 34578999999764321 23447899999999999999952 35789999998875
No 10
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.24 E-value=4.9e-12 Score=92.05 Aligned_cols=51 Identities=35% Similarity=0.814 Sum_probs=43.3
Q ss_pred CCCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCccc
Q 025507 138 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 190 (251)
Q Consensus 138 ~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~~ 190 (251)
.+..|+||++. +.....+++|+|||.||..||..|++. +.+||+||+.+..
T Consensus 14 ~~~~C~IC~~~-~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 14 SGLECPVCKED-YALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTG 64 (78)
T ss_dssp SSCCCTTTTSC-CCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCC
T ss_pred CCCCCeeCCcc-ccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCC
Confidence 46799999995 555566788999999999999999984 5899999998875
No 11
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.23 E-value=4.6e-12 Score=95.62 Aligned_cols=51 Identities=27% Similarity=0.672 Sum_probs=42.7
Q ss_pred CCCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCccc
Q 025507 138 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 190 (251)
Q Consensus 138 ~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~~ 190 (251)
.+..|+||++. +.....++.|||||.||..||..|++. +.+||+||+++..
T Consensus 39 ~~~~C~IC~~~-~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSE-YVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEE-CCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred CCCCCcccChh-hcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 45689999996 444556788999999999999999984 5799999998753
No 12
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.22 E-value=1e-11 Score=87.55 Aligned_cols=52 Identities=23% Similarity=0.560 Sum_probs=42.0
Q ss_pred CCCCcchhh-hcccCCceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCccc
Q 025507 139 HHDCPVCCE-YLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 190 (251)
Q Consensus 139 ~~~CpICle-~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~~ 190 (251)
+..||||++ .+.+....+++++|||+||.+|+.+|+..+..+||+||+++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 468999999 6555444446789999999999999977666789999998863
No 13
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.22 E-value=5e-12 Score=90.00 Aligned_cols=53 Identities=25% Similarity=0.664 Sum_probs=43.0
Q ss_pred CCCCCCcchhhhcccC---CceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCccc
Q 025507 137 AMHHDCPVCCEYLFET---RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 190 (251)
Q Consensus 137 ~~~~~CpICle~lf~s---~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~~ 190 (251)
..+..||||++.+.+. ...++.++|||.||.+||.+|++. +.+||+||.++..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccCh
Confidence 4467899999975442 244578999999999999999985 4799999998864
No 14
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=6.1e-12 Score=88.78 Aligned_cols=52 Identities=25% Similarity=0.674 Sum_probs=42.2
Q ss_pred CCCCCCcchhhhcccC---CceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCcc
Q 025507 137 AMHHDCPVCCEYLFET---RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 189 (251)
Q Consensus 137 ~~~~~CpICle~lf~s---~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~ 189 (251)
..+..||||++.+.+. ...+++++|||.||..||..|++. +.+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccC
Confidence 3467899999975442 234578999999999999999985 579999998875
No 15
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.20 E-value=1.4e-11 Score=96.49 Aligned_cols=52 Identities=17% Similarity=0.336 Sum_probs=39.5
Q ss_pred CCCCCCcchhhhccc---CCceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCcc
Q 025507 137 AMHHDCPVCCEYLFE---TRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 189 (251)
Q Consensus 137 ~~~~~CpICle~lf~---s~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~ 189 (251)
.++..|++|+++... ....++.++|||.||.+||.+||+. +.+||+||+++.
T Consensus 46 ~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 46 HIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp CTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred hHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 345678888864332 1224677899999999999999985 689999999864
No 16
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.18 E-value=9.5e-12 Score=86.53 Aligned_cols=51 Identities=25% Similarity=0.699 Sum_probs=41.7
Q ss_pred CCCCcchhhhcccC---CceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCccc
Q 025507 139 HHDCPVCCEYLFET---RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 190 (251)
Q Consensus 139 ~~~CpICle~lf~s---~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~~ 190 (251)
+..||||++.+.+. .+.++.++|||.||.+|+.+|++. +.+||+||+++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 56 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCc
Confidence 56899999965442 244578899999999999999985 5899999998764
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.15 E-value=1.6e-11 Score=86.90 Aligned_cols=50 Identities=26% Similarity=0.634 Sum_probs=41.4
Q ss_pred CCCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCccch
Q 025507 138 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDM 191 (251)
Q Consensus 138 ~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~~~ 191 (251)
.+..||||++.+.+ +++.+||||.||..|+..|++. +.+||+||+++..+
T Consensus 4 ~~~~C~IC~~~~~~---~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPSN---YSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCCS---CEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCCE
T ss_pred CCCCCeeCCccccC---CcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHhh
Confidence 45789999996432 4578999999999999999985 48999999988753
No 18
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=3e-11 Score=89.25 Aligned_cols=53 Identities=34% Similarity=0.706 Sum_probs=43.1
Q ss_pred CCCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhcC--CCCCCCCCcCccc
Q 025507 138 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH--QYACPICSKSVCD 190 (251)
Q Consensus 138 ~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~--~~~CP~Cr~~~~~ 190 (251)
....||||++.+.++...+++++|||.||..|+..|++.. ..+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 3568999999655544447889999999999999999853 4789999998754
No 19
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.11 E-value=6.2e-12 Score=93.19 Aligned_cols=57 Identities=28% Similarity=0.614 Sum_probs=43.1
Q ss_pred CCCCCcchhhhcccCCceeEEc--CCCCcccHHHHHHHHhcCCCCCCCCCcCccchhHHHH
Q 025507 138 MHHDCPVCCEYLFETRQDVIVL--PCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWE 196 (251)
Q Consensus 138 ~~~~CpICle~lf~s~~~~~~l--pCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~~~ 196 (251)
.+..||||+|.+.. .++.++ +|||.|+..|+..++....++||+||+++......|+
T Consensus 10 ~~~~CpICle~~~~--~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~ 68 (78)
T 1e4u_A 10 DPVECPLCMEPLEI--DDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYK 68 (78)
T ss_dssp CCCBCTTTCCBCCT--TTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCCC
T ss_pred cCCcCCccCccCcc--ccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhhc
Confidence 45789999996532 223344 4999999999999886567899999999987554443
No 20
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.10 E-value=1e-10 Score=84.99 Aligned_cols=48 Identities=17% Similarity=0.486 Sum_probs=40.4
Q ss_pred CCCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCcc
Q 025507 138 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 189 (251)
Q Consensus 138 ~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~ 189 (251)
.+..||||++. +. .+++++|||+|+..||..|++.++.+||+||+++.
T Consensus 7 ~~~~C~IC~~~-~~---~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 7 EYFRCPISLEL-MK---DPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSSCTTTSCC-CS---SEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred ccCCCCCcccc-cc---CCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 46789999994 44 35667999999999999999865789999999885
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=4.5e-11 Score=87.73 Aligned_cols=47 Identities=21% Similarity=0.520 Sum_probs=39.5
Q ss_pred CCCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCcc
Q 025507 138 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 189 (251)
Q Consensus 138 ~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~ 189 (251)
....||||++.+ . .+++++|||+||..||..|++. ..+||+||+++.
T Consensus 14 ~~~~C~IC~~~~-~---~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAF-Q---NPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBC-C---SEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC
T ss_pred CCCCCcCCCchh-c---CeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc
Confidence 456899999954 3 2457999999999999999985 589999999986
No 22
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=4.2e-11 Score=85.87 Aligned_cols=49 Identities=20% Similarity=0.529 Sum_probs=40.3
Q ss_pred CCCCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCccc
Q 025507 137 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 190 (251)
Q Consensus 137 ~~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~~ 190 (251)
..+..|+||++.+ . .++.+||||.||..||..|+.. +.+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~-~---~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTC-V---HPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBC-S---SEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred CCCCCCccCCccc-C---CCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence 3457899999854 3 3467899999999999999985 5899999998864
No 23
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=5.9e-11 Score=85.32 Aligned_cols=49 Identities=27% Similarity=0.535 Sum_probs=39.4
Q ss_pred CCCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCccc
Q 025507 138 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 190 (251)
Q Consensus 138 ~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~~ 190 (251)
.+..||||++.+.+ ++++++|||.||..||..|++. +.+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 14 PYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQ 62 (72)
T ss_dssp GGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCS
T ss_pred CCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCc
Confidence 35689999995433 3444599999999999999985 5899999998864
No 24
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=1.1e-10 Score=83.56 Aligned_cols=50 Identities=26% Similarity=0.775 Sum_probs=40.2
Q ss_pred CCCCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhc--CCCCCCCCCcCccc
Q 025507 137 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH--HQYACPICSKSVCD 190 (251)
Q Consensus 137 ~~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~--~~~~CP~Cr~~~~~ 190 (251)
..+..||||++. +. .+++++|||.||..||..|++. ...+||+||+.+..
T Consensus 18 ~~~~~C~IC~~~-~~---~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDI-LQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSB-CS---SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcc-cC---CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 345789999995 43 3567799999999999999963 45789999998753
No 25
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.2e-11 Score=88.16 Aligned_cols=49 Identities=22% Similarity=0.734 Sum_probs=40.7
Q ss_pred CCCCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCccch
Q 025507 137 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDM 191 (251)
Q Consensus 137 ~~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~~~ 191 (251)
..+..|+||++. +.. +.+||||.||..|+.+|+. .+.+||+||+.+...
T Consensus 13 ~~~~~C~IC~~~-~~~----~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 13 TDEEECCICMDG-RAD----LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCSSSCCS-CCS----EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCC
T ss_pred CCCCCCeeCCcC-ccC----cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCC
Confidence 346789999995 332 6889999999999999998 468999999888754
No 26
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=7.9e-11 Score=83.15 Aligned_cols=48 Identities=19% Similarity=0.515 Sum_probs=39.2
Q ss_pred CCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCccc
Q 025507 139 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 190 (251)
Q Consensus 139 ~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~~ 190 (251)
+..||||++. +.+ ++.++|||.||..||..|++..+.+||+||+++..
T Consensus 15 ~~~C~IC~~~-~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 15 KYKCEKCHLV-LCS---PKQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CEECTTTCCE-ESS---CCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCCCCCCChH-hcC---eeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 5689999985 432 34589999999999999996556789999998764
No 27
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.04 E-value=6.8e-11 Score=85.64 Aligned_cols=50 Identities=22% Similarity=0.669 Sum_probs=39.9
Q ss_pred CCCCcchhhhcccCCceeEEcC-CCCcccHHHHHHHHhcC-CCCCCCCCcCccchh
Q 025507 139 HHDCPVCCEYLFETRQDVIVLP-CGHTIHKNCLKEMREHH-QYACPICSKSVCDMS 192 (251)
Q Consensus 139 ~~~CpICle~lf~s~~~~~~lp-CgH~fH~~Ci~~wl~~~-~~~CP~Cr~~~~~~~ 192 (251)
+..||||++. +. .+++++ |||+||..||..|++.. ..+||+||+.+...+
T Consensus 15 ~~~C~IC~~~-~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 15 ELLCLICKDI-MT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp GGSCSSSCCC-CT---TCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCcCCChH-Hh---CCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 5689999995 44 245688 99999999999999853 368999999876543
No 28
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.03 E-value=1.3e-10 Score=88.97 Aligned_cols=49 Identities=16% Similarity=0.442 Sum_probs=39.6
Q ss_pred CCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCccc
Q 025507 139 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 190 (251)
Q Consensus 139 ~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~~ 190 (251)
+..||||++. +.. ++..++|||.||..||..|+.....+||+||.++..
T Consensus 22 ~~~C~IC~~~-~~~--p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEK-LRD--ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSB-CSS--EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCccCCcc-ccC--ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 4689999995 442 343399999999999999998655799999999863
No 29
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.01 E-value=1.5e-10 Score=91.01 Aligned_cols=52 Identities=25% Similarity=0.669 Sum_probs=42.3
Q ss_pred CCCCCcchhhhcccC---CceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCccc
Q 025507 138 MHHDCPVCCEYLFET---RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 190 (251)
Q Consensus 138 ~~~~CpICle~lf~s---~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~~ 190 (251)
.+..||||++.+.+. ++.++.++|||+||..||.+|++. +.+||+||+.+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcc
Confidence 457899999965442 344588999999999999999985 5799999998863
No 30
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.98 E-value=2e-10 Score=92.77 Aligned_cols=46 Identities=33% Similarity=0.889 Sum_probs=39.0
Q ss_pred CCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCccc
Q 025507 140 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 190 (251)
Q Consensus 140 ~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~~ 190 (251)
..||||++. +. .++++||||+||..||..|+.. +.+||+||+++..
T Consensus 54 ~~C~iC~~~-~~---~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 54 LQCIICSEY-FI---EAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKS 99 (138)
T ss_dssp SBCTTTCSB-CS---SEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCC
T ss_pred CCCcccCcc-cC---CceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCC
Confidence 479999995 43 3567899999999999999984 5889999999864
No 31
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.97 E-value=5.5e-10 Score=88.28 Aligned_cols=48 Identities=25% Similarity=0.598 Sum_probs=40.1
Q ss_pred CCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCccc
Q 025507 139 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 190 (251)
Q Consensus 139 ~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~~ 190 (251)
+..||||++. +. .++++||||+||..||..|+.....+||+||.++..
T Consensus 52 ~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQEL-VF---RPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSB-CS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChH-Hc---CcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4579999995 44 356789999999999999998666799999998864
No 32
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=4e-10 Score=78.67 Aligned_cols=43 Identities=26% Similarity=0.871 Sum_probs=35.2
Q ss_pred CCCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhc--CCCCCCCC
Q 025507 138 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH--HQYACPIC 184 (251)
Q Consensus 138 ~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~--~~~~CP~C 184 (251)
.+..||||++. +. .+++++|||.||..||..|++. ...+||+|
T Consensus 19 ~~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDI-LQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSB-CS---SCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCch-hC---CeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 45789999985 44 3567799999999999999974 45789998
No 33
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.96 E-value=7.9e-11 Score=93.87 Aligned_cols=51 Identities=18% Similarity=0.501 Sum_probs=0.9
Q ss_pred CCCCCcchhhhccc--------------CCceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCcc
Q 025507 138 MHHDCPVCCEYLFE--------------TRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 189 (251)
Q Consensus 138 ~~~~CpICle~lf~--------------s~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~ 189 (251)
.++.|+||++.+.+ ....++.++|||.||.+||.+||+. +.+||+||+++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 35689999986532 1123445699999999999999985 689999998764
No 34
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.93 E-value=8e-10 Score=80.54 Aligned_cols=49 Identities=22% Similarity=0.619 Sum_probs=39.8
Q ss_pred CCCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhcC-----CCCCCCCCcCccc
Q 025507 138 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH-----QYACPICSKSVCD 190 (251)
Q Consensus 138 ~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~-----~~~CP~Cr~~~~~ 190 (251)
.+..||||++. +. .+++++|||.||..|+..|+... ...||+||..+..
T Consensus 18 ~~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLEL-LK---EPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSC-CS---SCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChh-hC---cceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 35689999995 43 24578999999999999999862 5789999988763
No 35
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=5.8e-10 Score=76.11 Aligned_cols=43 Identities=35% Similarity=1.039 Sum_probs=34.5
Q ss_pred CCCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhc--CCCCCCCC
Q 025507 138 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH--HQYACPIC 184 (251)
Q Consensus 138 ~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~--~~~~CP~C 184 (251)
.+..||||++.+ .+ +++++|||.||..||..|+.. ...+||+|
T Consensus 14 ~~~~C~IC~~~~-~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYL-KE---PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBC-SS---CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCccc-Cc---cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 356899999954 32 356899999999999999654 46789998
No 36
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.92 E-value=1.7e-10 Score=83.58 Aligned_cols=49 Identities=27% Similarity=0.737 Sum_probs=39.7
Q ss_pred CCCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhcC------CCCCCCCCcCccc
Q 025507 138 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH------QYACPICSKSVCD 190 (251)
Q Consensus 138 ~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~------~~~CP~Cr~~~~~ 190 (251)
.+..||||++. +.. ++++||||+||..||..|+... ..+||+||.++..
T Consensus 11 ~~~~C~IC~~~-~~~---p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLEL-LTE---PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEE-CSS---CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCcc-cCC---eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 35689999995 442 4568999999999999999752 5789999998864
No 37
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.91 E-value=6.8e-10 Score=83.01 Aligned_cols=48 Identities=23% Similarity=0.690 Sum_probs=39.1
Q ss_pred CCCCCcchhhhcccCCceeEEcC-CCCcccHHHHHHHHhc-CCCCCCCCCcCcc
Q 025507 138 MHHDCPVCCEYLFETRQDVIVLP-CGHTIHKNCLKEMREH-HQYACPICSKSVC 189 (251)
Q Consensus 138 ~~~~CpICle~lf~s~~~~~~lp-CgH~fH~~Ci~~wl~~-~~~~CP~Cr~~~~ 189 (251)
.+..||||++. +. .++++| |||+|+..||..|+.. +...||+||+++.
T Consensus 12 ~~~~C~IC~~~-~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDI-MT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEE-CS---SCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCCCCCCChh-hc---CceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 35689999984 54 356789 9999999999999864 3478999999973
No 38
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=7.3e-10 Score=82.44 Aligned_cols=53 Identities=19% Similarity=0.511 Sum_probs=41.3
Q ss_pred CCCCCCCcchhhhcccCCceeEEcCCC-----CcccHHHHHHHHhcC-CCCCCCCCcCccc
Q 025507 136 GAMHHDCPVCCEYLFETRQDVIVLPCG-----HTIHKNCLKEMREHH-QYACPICSKSVCD 190 (251)
Q Consensus 136 ~~~~~~CpICle~lf~s~~~~~~lpCg-----H~fH~~Ci~~wl~~~-~~~CP~Cr~~~~~ 190 (251)
.+.+..|+||+++ ++... .+++||+ |.||.+||++||... ..+||+||..+..
T Consensus 12 ~~~~~~C~IC~~~-~~~~~-~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCE-GDDES-PLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCC-CCSSS-CEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCeEcCcc-ccCCC-eeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 3456799999986 44343 3578996 999999999999863 3689999988753
No 39
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.90 E-value=7.3e-10 Score=84.13 Aligned_cols=48 Identities=27% Similarity=0.751 Sum_probs=38.6
Q ss_pred CCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCccc
Q 025507 139 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 190 (251)
Q Consensus 139 ~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~~ 190 (251)
+..||||++. +.+ ++++++|||+||..|+..|+.. +.+||+||..+..
T Consensus 22 ~~~C~IC~~~-~~~--p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEY-FNI--AMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSB-CSS--EEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCG
T ss_pred CCCcccCChh-hCC--cCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCCh
Confidence 4689999995 442 3444499999999999999984 5899999998863
No 40
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.89 E-value=6e-10 Score=86.97 Aligned_cols=48 Identities=19% Similarity=0.475 Sum_probs=40.1
Q ss_pred CCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCccc
Q 025507 139 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 190 (251)
Q Consensus 139 ~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~~ 190 (251)
+..||||++. +. .++.++|||+||..||..|+.....+||+||.++..
T Consensus 23 ~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHI-LA---DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSB-CS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcH-hc---CcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 4689999985 43 345689999999999999998656789999999864
No 41
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=9.6e-10 Score=80.11 Aligned_cols=49 Identities=29% Similarity=0.739 Sum_probs=39.8
Q ss_pred CCCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhc-----CCCCCCCCCcCccc
Q 025507 138 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH-----HQYACPICSKSVCD 190 (251)
Q Consensus 138 ~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~-----~~~~CP~Cr~~~~~ 190 (251)
.+..||||++. +.. ++.++|||.||..|+..|+.. ....||+||..+..
T Consensus 18 ~~~~C~IC~~~-~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLEL-LTQ---PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSC-CSS---CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcc-cCC---ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 45799999995 432 456799999999999999875 25789999988763
No 42
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.89 E-value=1e-09 Score=84.74 Aligned_cols=48 Identities=31% Similarity=0.708 Sum_probs=39.1
Q ss_pred CCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCccc
Q 025507 139 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 190 (251)
Q Consensus 139 ~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~~ 190 (251)
+..||||++. +.+ ++.+++|||+||..||..|+.. +.+||+||..+..
T Consensus 15 ~~~C~IC~~~-~~~--p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGY-FID--ATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSB-CSS--EEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCS
T ss_pred cCCCccCChH-HhC--cCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccc
Confidence 5689999995 432 4444599999999999999985 5899999998863
No 43
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.86 E-value=1.3e-09 Score=90.15 Aligned_cols=48 Identities=21% Similarity=0.613 Sum_probs=39.6
Q ss_pred CCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCcc
Q 025507 139 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 189 (251)
Q Consensus 139 ~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~ 189 (251)
+..||||++. +.. ++.+++|||.||..||..|+......||+||..+.
T Consensus 54 ~~~C~IC~~~-~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 54 ELMCPICLDM-LKN--TMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHBCTTTSSB-CSS--EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCcccChH-hhC--cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 3489999995 442 45556999999999999999865788999999885
No 44
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.84 E-value=5e-10 Score=87.29 Aligned_cols=48 Identities=31% Similarity=0.840 Sum_probs=40.0
Q ss_pred CCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCccc
Q 025507 139 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 190 (251)
Q Consensus 139 ~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~~ 190 (251)
+..||||++. +. .++.++|||+||..||..|+.....+||+||+.+..
T Consensus 15 ~~~C~iC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEI-LV---EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSB-CS---SCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcc-cC---ceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 4579999985 43 356789999999999999998657899999998863
No 45
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.82 E-value=1.4e-09 Score=85.40 Aligned_cols=53 Identities=25% Similarity=0.664 Sum_probs=42.3
Q ss_pred CCCCCCcchhhhcccC---CceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCccc
Q 025507 137 AMHHDCPVCCEYLFET---RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 190 (251)
Q Consensus 137 ~~~~~CpICle~lf~s---~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~~ 190 (251)
.....|+||++.+.+. ...++.++|||.||..||++|++. +.+||+||.++..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCCh
Confidence 3467899999865431 234478899999999999999985 5799999998864
No 46
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.82 E-value=2.2e-09 Score=88.35 Aligned_cols=48 Identities=23% Similarity=0.607 Sum_probs=40.1
Q ss_pred CCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCccc
Q 025507 139 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 190 (251)
Q Consensus 139 ~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~~ 190 (251)
+..||||++. +. .++++||||+||..||..|+.....+||+||..+..
T Consensus 78 ~~~C~IC~~~-~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 78 SFMCVCCQEL-VY---QPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HTBCTTTSSB-CS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCEeecCChh-hc---CCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 4689999994 44 355689999999999999998666789999998864
No 47
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.80 E-value=1.8e-09 Score=84.73 Aligned_cols=48 Identities=23% Similarity=0.674 Sum_probs=40.0
Q ss_pred CCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCccc
Q 025507 139 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 190 (251)
Q Consensus 139 ~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~~ 190 (251)
+..||||++. +. .++.++|||+||..||..|++....+||+||+++..
T Consensus 18 ~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 18 KYECPICLMA-LR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GGBCTTTCSB-CS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCcCChh-hc---CeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 4689999985 43 246789999999999999998655699999999875
No 48
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.77 E-value=2.7e-09 Score=82.09 Aligned_cols=47 Identities=23% Similarity=0.754 Sum_probs=37.9
Q ss_pred CCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhcC--CCCCCCCCcCcc
Q 025507 139 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH--QYACPICSKSVC 189 (251)
Q Consensus 139 ~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~--~~~CP~Cr~~~~ 189 (251)
...||||++. +. .++.++|||.||..||..|+... ..+||+||.++.
T Consensus 21 ~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 21 ILECPICLEL-IK---EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HTSCSSSCCC-CS---SCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCcccChh-hc---CeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 4589999995 43 24568999999999999999853 258999999875
No 49
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.73 E-value=4.9e-09 Score=74.27 Aligned_cols=51 Identities=18% Similarity=0.460 Sum_probs=39.9
Q ss_pred CCCCCCCcchhhhcccCCceeEEc--CCCCc-ccHHHHHHHHhcCCCCCCCCCcCccch
Q 025507 136 GAMHHDCPVCCEYLFETRQDVIVL--PCGHT-IHKNCLKEMREHHQYACPICSKSVCDM 191 (251)
Q Consensus 136 ~~~~~~CpICle~lf~s~~~~~~l--pCgH~-fH~~Ci~~wl~~~~~~CP~Cr~~~~~~ 191 (251)
...+..|+||++... .++++ ||||. |+.+|+..|++. +..||+||+++...
T Consensus 5 ~~~~~~C~IC~~~~~----~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~~ 58 (64)
T 2vje_A 5 LNAIEPCVICQGRPK----NGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQMI 58 (64)
T ss_dssp CGGGSCCTTTSSSCS----CEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCCEE
T ss_pred CCCcCCCCcCCCCCC----CEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchhce
Confidence 345678999998522 34444 99999 899999999874 57899999988653
No 50
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.65 E-value=4.8e-09 Score=72.17 Aligned_cols=45 Identities=29% Similarity=0.566 Sum_probs=36.2
Q ss_pred CCCCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCcc
Q 025507 137 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 189 (251)
Q Consensus 137 ~~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~ 189 (251)
..+..|+||++. +. .+++|||||+|+..|+..| ..+||+||+.+.
T Consensus 4 ~~~~~C~IC~~~-~~---~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAE-AK---CPKLLPCLHTLCSGCLEAS----GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSS-CB---CCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSS
T ss_pred ccCCCceEeCCc-cC---CeEEcCCCCcccHHHHccC----CCCCCcCCcEee
Confidence 345789999985 44 2467999999999999884 468999998875
No 51
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.63 E-value=1.4e-08 Score=79.54 Aligned_cols=44 Identities=23% Similarity=0.663 Sum_probs=36.9
Q ss_pred CCCCcchhhhcccCCceeEEc-CCCCcccHHHHHHHHhcCCCCCCCCCcCcc
Q 025507 139 HHDCPVCCEYLFETRQDVIVL-PCGHTIHKNCLKEMREHHQYACPICSKSVC 189 (251)
Q Consensus 139 ~~~CpICle~lf~s~~~~~~l-pCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~ 189 (251)
+..||||++. +. .++++ +|||+|+..||..|+. ..||+||.++.
T Consensus 22 ~~~C~IC~~~-~~---~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNI-LR---EPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSC-CS---SCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCS
T ss_pred CCCCCCCChH-hh---CccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCc
Confidence 5689999985 44 24566 9999999999999986 68999999885
No 52
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.63 E-value=1.1e-08 Score=72.18 Aligned_cols=52 Identities=21% Similarity=0.518 Sum_probs=38.8
Q ss_pred CCCCCCcchhhhcccCCceeEEcCCCCc-ccHHHHHHHHhcCCCCCCCCCcCccch
Q 025507 137 AMHHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCDM 191 (251)
Q Consensus 137 ~~~~~CpICle~lf~s~~~~~~lpCgH~-fH~~Ci~~wl~~~~~~CP~Cr~~~~~~ 191 (251)
+.+..|+||++...+ ..++.+||||. |+.+|+..|++. +.+||+||+++...
T Consensus 5 ~~~~~C~IC~~~~~~--~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~~ 57 (63)
T 2vje_B 5 NLLKPCSLCEKRPRD--GNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQLV 57 (63)
T ss_dssp GGGSBCTTTSSSBSC--EEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCEE
T ss_pred CcCCCCcccCCcCCC--eEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhce
Confidence 345789999985322 11223499999 999999999874 47899999988653
No 53
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.62 E-value=1.9e-08 Score=75.01 Aligned_cols=47 Identities=15% Similarity=0.217 Sum_probs=40.3
Q ss_pred CCCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCcc
Q 025507 138 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 189 (251)
Q Consensus 138 ~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~ 189 (251)
.+..||||++ ++. ++++++|||+|.+.||..|+.. +.+||+||.++.
T Consensus 13 ~~~~CpI~~~-~m~---dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~ 59 (85)
T 2kr4_A 13 DEFRDPLMDT-LMT---DPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLT 59 (85)
T ss_dssp TTTBCTTTCS-BCS---SEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCC
T ss_pred hheECcccCc-hhc---CCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCC
Confidence 4678999998 455 4678899999999999999985 689999999876
No 54
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.60 E-value=4.2e-08 Score=85.81 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=41.8
Q ss_pred CCCCCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCcc
Q 025507 136 GAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 189 (251)
Q Consensus 136 ~~~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~ 189 (251)
......||||++ ++. +++++||||+|++.||..|+..+..+||+||.++.
T Consensus 205 ~~~~~~c~i~~~-~~~---dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 205 IPDYLCGKISFE-LMR---EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CCSTTBCTTTCS-BCS---SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CCcccCCcCcCC-Hhc---CCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 345678999998 555 46789999999999999999865566999999886
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.59 E-value=7.1e-09 Score=84.50 Aligned_cols=46 Identities=20% Similarity=0.463 Sum_probs=38.3
Q ss_pred CCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCc
Q 025507 139 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSV 188 (251)
Q Consensus 139 ~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~ 188 (251)
+..||||++. +. .++.++|||+|+..||..|++....+||+||.++
T Consensus 31 ~~~C~IC~~~-~~---~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 31 KYLCSACRNV-LR---RPFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGBCTTTCSB-CS---SEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCCCCCChh-hc---CcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 5689999984 44 2466899999999999999986656899999865
No 56
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.58 E-value=1.2e-08 Score=74.01 Aligned_cols=43 Identities=26% Similarity=0.739 Sum_probs=36.1
Q ss_pred CCCCcchhhhcccCCceeEEcCCCCc-ccHHHHHHHHhcCCCCCCCCCcCccc
Q 025507 139 HHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCD 190 (251)
Q Consensus 139 ~~~CpICle~lf~s~~~~~~lpCgH~-fH~~Ci~~wl~~~~~~CP~Cr~~~~~ 190 (251)
+..|+||++.+ . .++.+||||. |+..|+..| ..||+||+.+..
T Consensus 24 ~~~C~iC~~~~-~---~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRN-I---AIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSB-C---CEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCC-C---CEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 46899999853 2 4678899999 999999988 579999998875
No 57
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.57 E-value=3.8e-08 Score=72.31 Aligned_cols=49 Identities=18% Similarity=0.453 Sum_probs=38.2
Q ss_pred CCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhcC-CCCCCCCCcCccc
Q 025507 139 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH-QYACPICSKSVCD 190 (251)
Q Consensus 139 ~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~-~~~CP~Cr~~~~~ 190 (251)
..+|+||.+. +... ..-..|+|.||..||..||+.. +.+||+||.++..
T Consensus 15 i~~C~IC~~~-i~~g--~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 15 VKICNICHSL-LIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SCBCSSSCCB-CSSS--EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCcCcchhhH-cccC--CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 4689999985 4433 2334899999999999999853 2789999988764
No 58
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.57 E-value=3e-08 Score=76.40 Aligned_cols=47 Identities=15% Similarity=0.233 Sum_probs=40.3
Q ss_pred CCCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCcc
Q 025507 138 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 189 (251)
Q Consensus 138 ~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~ 189 (251)
.+..||||++ ++. +++++||||+|.+.||..||. .+.+||+||.++.
T Consensus 28 ~~~~CpI~~~-~m~---dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~ 74 (100)
T 2kre_A 28 DEFRDPLMDT-LMT---DPVRLPSGTIMDRSIILRHLL-NSPTDPFNRQTLT 74 (100)
T ss_dssp TTTBCTTTCS-BCS---SEEEETTTEEEEHHHHHHHTT-SCSBCSSSCCBCC
T ss_pred HhhCCcCccC-ccc---CCeECCCCCEEchHHHHHHHH-cCCCCCCCCCCCC
Confidence 4678999998 455 467889999999999999998 4689999999876
No 59
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.55 E-value=5e-08 Score=74.89 Aligned_cols=47 Identities=17% Similarity=0.231 Sum_probs=40.3
Q ss_pred CCCCCcchhhhcccCCceeEEcCCC-CcccHHHHHHHHhcCCCCCCCCCcCcc
Q 025507 138 MHHDCPVCCEYLFETRQDVIVLPCG-HTIHKNCLKEMREHHQYACPICSKSVC 189 (251)
Q Consensus 138 ~~~~CpICle~lf~s~~~~~~lpCg-H~fH~~Ci~~wl~~~~~~CP~Cr~~~~ 189 (251)
.+..||||++ ++. ++++++|| |+|.+.||..||.. +.+||+||.++.
T Consensus 21 ~~~~CpI~~~-~m~---dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~ 68 (98)
T 1wgm_A 21 DEFLDPIMST-LMC---DPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLT 68 (98)
T ss_dssp TTTBCTTTCS-BCS---SEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCC
T ss_pred HhcCCcCccc-ccc---CCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCC
Confidence 3578999998 555 46789999 99999999999985 689999999876
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.53 E-value=3.7e-08 Score=81.57 Aligned_cols=48 Identities=23% Similarity=0.674 Sum_probs=39.8
Q ss_pred CCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCccc
Q 025507 139 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 190 (251)
Q Consensus 139 ~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~~ 190 (251)
+..||||++. +. .++.++|||+|+..||..|+.....+||+||.++..
T Consensus 18 ~~~C~IC~~~-~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 18 KYECPICLMA-LR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GGBCTTTCSB-CS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCChh-hc---CcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 4689999995 44 245689999999999999998655699999998875
No 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.49 E-value=1.6e-07 Score=71.08 Aligned_cols=46 Identities=28% Similarity=0.608 Sum_probs=36.9
Q ss_pred CCCCCcchhhhcccCCceeEEcC-CCCcccHHHHHHHHhcC-----CCCCCC--CCcC
Q 025507 138 MHHDCPVCCEYLFETRQDVIVLP-CGHTIHKNCLKEMREHH-----QYACPI--CSKS 187 (251)
Q Consensus 138 ~~~~CpICle~lf~s~~~~~~lp-CgH~fH~~Ci~~wl~~~-----~~~CP~--Cr~~ 187 (251)
.+..||||++ +|. ++++++ |||+|.+.||..||... ..+||+ |++.
T Consensus 6 ~~~~CPI~~~-~~~---dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKE-EMK---KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCS-BCS---SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCc-hhc---CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3568999998 455 356675 99999999999999752 468999 9966
No 62
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.46 E-value=1e-07 Score=89.83 Aligned_cols=49 Identities=31% Similarity=0.734 Sum_probs=40.7
Q ss_pred CCCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCccc
Q 025507 138 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 190 (251)
Q Consensus 138 ~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~~ 190 (251)
....|+||++.+ . .++.+||||.||..|+..|+.....+||+||.++..
T Consensus 331 ~~~~C~ICle~~-~---~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 331 TFQLCKICAEND-K---DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSSBCTTTSSSB-C---CEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCCccCcCC-C---CeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 346899999853 2 467899999999999999998556889999998864
No 63
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.40 E-value=2.8e-07 Score=69.32 Aligned_cols=49 Identities=24% Similarity=0.517 Sum_probs=37.5
Q ss_pred CCCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhc----C---CCCCCC--CCcC
Q 025507 138 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH----H---QYACPI--CSKS 187 (251)
Q Consensus 138 ~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~----~---~~~CP~--Cr~~ 187 (251)
....|+||+++ +..+..+.+.+|||.|+.+|+..|+.. + ..+||. |+..
T Consensus 4 ~~~~C~IC~~~-~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGE-YPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCC-CBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcc-cccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 35689999995 444444444589999999999998763 1 357999 9998
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=2.1e-07 Score=66.75 Aligned_cols=46 Identities=33% Similarity=0.732 Sum_probs=37.3
Q ss_pred CCCCCCcchhhhcccCCceeEEcCCCCc-ccHHHHHHHHhcCCCCCCCCCcCccch
Q 025507 137 AMHHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCDM 191 (251)
Q Consensus 137 ~~~~~CpICle~lf~s~~~~~~lpCgH~-fH~~Ci~~wl~~~~~~CP~Cr~~~~~~ 191 (251)
..+..|+||++. ...+++|||||. |+..|+.. ...||+||..+...
T Consensus 13 ~~~~~C~IC~~~----~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 13 ENSKDCVVCQNG----TVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSSCCSSSSSS----CCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCCE
T ss_pred CCCCCCCCcCcC----CCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhce
Confidence 446789999984 235788999999 99999984 25799999988764
No 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=8.3e-08 Score=69.53 Aligned_cols=43 Identities=26% Similarity=0.738 Sum_probs=34.6
Q ss_pred CCCCcchhhhcccCCceeEEcCCCCc-ccHHHHHHHHhcCCCCCCCCCcCccc
Q 025507 139 HHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCD 190 (251)
Q Consensus 139 ~~~CpICle~lf~s~~~~~~lpCgH~-fH~~Ci~~wl~~~~~~CP~Cr~~~~~ 190 (251)
+..|+||++. +. .++++||||. |+..|+..+ ..||+||+.+..
T Consensus 25 ~~~C~IC~~~-~~---~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDR-NI---AIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSS-CC---CBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCC
T ss_pred CCCCCcCCCC-CC---CEEEecCCCHHHHHHHhhCC-----CCCccCCceecC
Confidence 3579999985 33 4667899999 999999642 679999998865
No 66
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.33 E-value=2.6e-07 Score=64.96 Aligned_cols=51 Identities=25% Similarity=0.513 Sum_probs=38.9
Q ss_pred CCCCCCCCcchhhhcccCCceeEEcCCC--C---cccHHHHHHHHhc-CCCCCCCCCcCcc
Q 025507 135 EGAMHHDCPVCCEYLFETRQDVIVLPCG--H---TIHKNCLKEMREH-HQYACPICSKSVC 189 (251)
Q Consensus 135 e~~~~~~CpICle~lf~s~~~~~~lpCg--H---~fH~~Ci~~wl~~-~~~~CP~Cr~~~~ 189 (251)
|.+....|.||++. . ..+ .++||. + .||..||..|+.. ++.+||+|+..+.
T Consensus 2 e~~~~~~CrIC~~~-~--~~~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 2 EDEDVPVCWICNEE-L--GNE-RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp TTCSCCEETTTTEE-C--SCC-CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCEeEEeecC-C--CCc-eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 45667789999985 2 223 368865 4 8999999999975 4678999998764
No 67
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.30 E-value=7.1e-07 Score=75.83 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=39.8
Q ss_pred CCCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCcc
Q 025507 138 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 189 (251)
Q Consensus 138 ~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~ 189 (251)
.+..||||++ ++. +++++||||+|.+.||..|+.....+||+|+.++.
T Consensus 105 ~~f~CPI~~e-lm~---DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 105 DYLCGKISFE-LMR---EPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp GGGBCTTTCS-BCS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred HhhcccCccc-cCC---CCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 3568999998 455 46788999999999999999864347999999876
No 68
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.23 E-value=2.8e-07 Score=67.86 Aligned_cols=44 Identities=34% Similarity=0.820 Sum_probs=36.1
Q ss_pred CCCCcchhhhcccCCceeEEcCCCCc-ccHHHHHHHHhcCCCCCCCCCcCccch
Q 025507 139 HHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCDM 191 (251)
Q Consensus 139 ~~~CpICle~lf~s~~~~~~lpCgH~-fH~~Ci~~wl~~~~~~CP~Cr~~~~~~ 191 (251)
+..|+||++.+ ..++++||||. |+..|+..| ..||+||..+...
T Consensus 18 ~~~C~IC~~~~----~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEE----INSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSB----CCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCEE
T ss_pred CCEeEEeCccc----CcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhCe
Confidence 45799999842 24778999999 999999877 2799999988753
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.02 E-value=3.3e-06 Score=75.75 Aligned_cols=50 Identities=24% Similarity=0.664 Sum_probs=39.6
Q ss_pred CCCCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhc-CCCCCCC--CCcCcc
Q 025507 137 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH-HQYACPI--CSKSVC 189 (251)
Q Consensus 137 ~~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~-~~~~CP~--Cr~~~~ 189 (251)
..+..||||++. |. ++++...|||+|.+.||..|+.. +..+||+ |++.+.
T Consensus 179 ~~el~CPIcl~~-f~--DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKP-YE--APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSB-CS--SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCc-cc--CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 346789999995 43 25555699999999999999875 3467999 998775
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.00 E-value=9.8e-07 Score=82.01 Aligned_cols=54 Identities=20% Similarity=0.474 Sum_probs=39.7
Q ss_pred CCCCCCCcchhhhcccCCcee-E---EcCCCCcccHHHHHHHHhcCC----------CCCCCCCcCcc
Q 025507 136 GAMHHDCPVCCEYLFETRQDV-I---VLPCGHTIHKNCLKEMREHHQ----------YACPICSKSVC 189 (251)
Q Consensus 136 ~~~~~~CpICle~lf~s~~~~-~---~lpCgH~fH~~Ci~~wl~~~~----------~~CP~Cr~~~~ 189 (251)
.....+|+||++.+.+++.-+ . -++|||.||..||.+|+++.. ..||.||.++.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 345679999999765533222 1 247999999999999997411 36999999776
No 71
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.82 E-value=4.1e-06 Score=77.61 Aligned_cols=43 Identities=30% Similarity=0.834 Sum_probs=36.2
Q ss_pred CCCCcchhhhcccCCceeEEcCCCCc-ccHHHHHHHHhcCCCCCCCCCcCccc
Q 025507 139 HHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCD 190 (251)
Q Consensus 139 ~~~CpICle~lf~s~~~~~~lpCgH~-fH~~Ci~~wl~~~~~~CP~Cr~~~~~ 190 (251)
+..|+||++. +. .++.+||||. |+..|+..| ..||+||..+..
T Consensus 295 ~~~C~IC~~~-~~---~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDK-EV---SVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSS-BC---CEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CCCCCccCCc-CC---ceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 4689999985 33 4678899999 999999988 579999998865
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.73 E-value=2.1e-05 Score=60.76 Aligned_cols=49 Identities=22% Similarity=0.419 Sum_probs=39.2
Q ss_pred CCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCccchh
Q 025507 141 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMS 192 (251)
Q Consensus 141 ~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~~~~ 192 (251)
.|++|.-++. ...+.+||+|.|+.+|+..|.+.+..+||+|+.++.+++
T Consensus 3 fC~~C~~Pi~---iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIK---VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCS---EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeE---EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 4778864322 246788999999999999998766789999999998654
No 73
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.52 E-value=5.2e-05 Score=53.13 Aligned_cols=47 Identities=13% Similarity=0.166 Sum_probs=37.4
Q ss_pred CCCCcchhhhcccCCceeEEc-CCCCcccHHHHHHHHhcCCCCCCCCCcCccc
Q 025507 139 HHDCPVCCEYLFETRQDVIVL-PCGHTIHKNCLKEMREHHQYACPICSKSVCD 190 (251)
Q Consensus 139 ~~~CpICle~lf~s~~~~~~l-pCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~~ 190 (251)
...|||+++. +. +++++ ++||+|-+++|.+|++. +.+||+.+.++..
T Consensus 3 ~~~CpIs~~~-m~---dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKV-PR---RPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSC-CS---SEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCG
T ss_pred eEEecCCCCC-CC---CCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCCh
Confidence 4679999994 44 24555 89999999999999985 4679999988763
No 74
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.05 E-value=0.0039 Score=54.75 Aligned_cols=49 Identities=20% Similarity=0.510 Sum_probs=36.7
Q ss_pred CCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhcC-CCCCCCCCcCccc
Q 025507 139 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH-QYACPICSKSVCD 190 (251)
Q Consensus 139 ~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~-~~~CP~Cr~~~~~ 190 (251)
-..|.||.+-+.. ...-..|+|.||..|+..|+++. +.+||.|+..+..
T Consensus 180 i~~C~iC~~iv~~---g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQ---GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSS---CEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhC---CcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 5689999984432 23333599999999999998753 4689999987753
No 75
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=93.58 E-value=0.033 Score=41.29 Aligned_cols=29 Identities=28% Similarity=0.765 Sum_probs=19.8
Q ss_pred eecCCCCccccccccCcCCCCccceEecCccccc
Q 025507 55 VICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLF 88 (251)
Q Consensus 55 v~C~~C~~~q~~~~~C~~Cg~~f~~y~C~~C~~~ 88 (251)
.+|..|+.++.+ +..||+. .|||.-|+=+
T Consensus 32 afCPeCgq~Le~---lkACGA~--~yFC~~C~~L 60 (81)
T 2jrp_A 32 ALCPDCRQPLQV---LKACGAV--DYFCQNGHGL 60 (81)
T ss_dssp EECSSSCSCCCE---EEETTEE--EECCTTTTCC
T ss_pred ccCcchhhHHHH---HHhcCCc--CeeeccCCCE
Confidence 366666666444 6667766 8999999744
No 76
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=92.56 E-value=0.16 Score=41.34 Aligned_cols=50 Identities=22% Similarity=0.465 Sum_probs=35.1
Q ss_pred cCCCCCCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHh----------cCCCCCCCCCcC
Q 025507 134 VEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMRE----------HHQYACPICSKS 187 (251)
Q Consensus 134 ~e~~~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~----------~~~~~CP~Cr~~ 187 (251)
.++..+..|.||.+ +++-+.-=.|.-+||..||.+-+. .+.-.||+|+..
T Consensus 58 d~Dg~~d~C~vC~~----GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 58 DSDGMDEQCRWCAE----GGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp CTTSCBCSCSSSCC----CSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred cCCCCCCeecccCC----CCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 34667889999997 333121127889999999997552 245689999954
No 77
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.36 E-value=0.057 Score=40.22 Aligned_cols=33 Identities=21% Similarity=0.423 Sum_probs=24.8
Q ss_pred CCCCcchhhhcccCCceeEE-cCCCCcccHHHHHHH
Q 025507 139 HHDCPVCCEYLFETRQDVIV-LPCGHTIHKNCLKEM 173 (251)
Q Consensus 139 ~~~CpICle~lf~s~~~~~~-lpCgH~fH~~Ci~~w 173 (251)
+..|+||++.++. .++.. ++|+|+|+..|+..+
T Consensus 3 e~~C~~C~~~~~~--~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQ--DAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCC--BCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCC--CceEECCcCChHHhHHHCHHH
Confidence 4679999974333 23333 999999999999984
No 78
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=88.91 E-value=0.14 Score=39.13 Aligned_cols=82 Identities=22% Similarity=0.570 Sum_probs=42.9
Q ss_pred CCCcceecCC-cceeeccCCCcce-----eccccc----cccccCCCCCCCCcchhhhcccCCceeEE-cCCCCcccHHH
Q 025507 101 GCGICRIGGC-DNFFHCNKCRCCY-----SMLLKN----SHPCVEGAMHHDCPVCCEYLFETRQDVIV-LPCGHTIHKNC 169 (251)
Q Consensus 101 ~CgiCR~g~~-~~~fHC~~C~~c~-----~~~l~~----~H~C~e~~~~~~CpICle~lf~s~~~~~~-lpCgH~fH~~C 169 (251)
.|.||..+|. ++...|+.|+.-| .+.+.. .=.|.+= ..|.||.+. .....++. -.|.-.||..|
T Consensus 9 ~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C---~~C~~C~~~--~~~~~ll~Cd~C~~~yH~~C 83 (111)
T 2ysm_A 9 NCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPEC---KVCQNCKQS--GEDSKMLVCDTCDKGYHTFC 83 (111)
T ss_dssp CBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTT---CCCTTTCCC--SCCTTEEECSSSCCEEEGGG
T ss_pred CCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcC---CcccccCcc--CCCCCeeECCCCCcHHhHHh
Confidence 3555555552 4556666666443 332211 1111110 146677752 11112222 27899999999
Q ss_pred HHHHHhc---CCCCCCCCCcC
Q 025507 170 LKEMREH---HQYACPICSKS 187 (251)
Q Consensus 170 i~~wl~~---~~~~CP~Cr~~ 187 (251)
+.+-|.. +...||.|+..
T Consensus 84 l~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 84 LQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp SSSCCSSCCSSCCCCHHHHCC
T ss_pred cCCccccCCCCCcCCcCCcCc
Confidence 9875442 34678888653
No 79
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=87.93 E-value=0.18 Score=40.53 Aligned_cols=37 Identities=22% Similarity=0.621 Sum_probs=29.4
Q ss_pred ceeEEcCCCCCCccc-------------cceee------eccCCCCCCccccccCC
Q 025507 215 KVWILCNDCGKTSNV-------------QFHVL------AQKCPNCKSYNTRLTRG 251 (251)
Q Consensus 215 ~~~IlCndC~~~s~~-------------~~h~l------g~kC~~C~SyNT~~~~~ 251 (251)
.+...|.+|+..... .+|++ ..+||.|||.+..+++|
T Consensus 68 p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~i~~G 123 (139)
T 3a43_A 68 EAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFEVVKG 123 (139)
T ss_dssp CCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEEEEES
T ss_pred CCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCccEEecC
Confidence 467899999987532 46776 68999999999987665
No 80
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=86.49 E-value=0.26 Score=37.50 Aligned_cols=45 Identities=29% Similarity=0.665 Sum_probs=35.2
Q ss_pred CCCCcchhhhcccCCceeEEcCCC-CcccHHHHHHHHhcCCCCCCCCCcCccc
Q 025507 139 HHDCPVCCEYLFETRQDVIVLPCG-HTIHKNCLKEMREHHQYACPICSKSVCD 190 (251)
Q Consensus 139 ~~~CpICle~lf~s~~~~~~lpCg-H~fH~~Ci~~wl~~~~~~CP~Cr~~~~~ 190 (251)
..+|-.|- |... .++.|. |.++..|++.+|+. +.+||||.+++..
T Consensus 28 ~~nCKsCW---f~~k---~LV~C~dHYLCl~CLtlmL~~-SdrCpIC~~pLPt 73 (99)
T 2ko5_A 28 PQFCKSCW---FENK---GLVECNNHYLCLNCLTLLLSV-SNRCPICKMPLPT 73 (99)
T ss_dssp CCCCCSSC---SCCS---SEEECSSCEEEHHHHHHTCSS-SSEETTTTEECCC
T ss_pred cccChhhc---cccC---CeeeecchhhHHHHHHHHHhh-ccCCcccCCcCCc
Confidence 46888897 3322 255674 99999999999985 5899999998864
No 81
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=86.22 E-value=0.15 Score=39.26 Aligned_cols=74 Identities=18% Similarity=0.459 Sum_probs=41.5
Q ss_pred CCcceeeccCCCcceecc-c-----------cccccccCCCCCCCCcchhhhcccCCceeEE-cCCCCcccHHHHHHHHh
Q 025507 109 GCDNFFHCNKCRCCYSML-L-----------KNSHPCVEGAMHHDCPVCCEYLFETRQDVIV-LPCGHTIHKNCLKEMRE 175 (251)
Q Consensus 109 ~~~~~fHC~~C~~c~~~~-l-----------~~~H~C~e~~~~~~CpICle~lf~s~~~~~~-lpCgH~fH~~Ci~~wl~ 175 (251)
.+++...|+.|+.-|-.+ | ..+=.|.+= ..|.||.+. ..+...++. -.|...||..|+.+-|.
T Consensus 22 ~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C---~~C~vC~~~-~~~~~~ll~Cd~C~~~yH~~Cl~p~l~ 97 (112)
T 3v43_A 22 KPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIEC---KTCSSCRDQ-GKNADNMLFCDSCDRGFHMECCDPPLT 97 (112)
T ss_dssp CCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTT---CCBTTTCCC-CCTTCCCEECTTTCCEECGGGCSSCCS
T ss_pred CchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccC---CccccccCc-CCCccceEEcCCCCCeeecccCCCCCC
Confidence 356777777777655221 1 112223321 157788752 111112222 26889999999987554
Q ss_pred c---CCCCCCCCCc
Q 025507 176 H---HQYACPICSK 186 (251)
Q Consensus 176 ~---~~~~CP~Cr~ 186 (251)
. +...||.|+.
T Consensus 98 ~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 98 RMPKGMWICQICRP 111 (112)
T ss_dssp SCCSSCCCCTTTSC
T ss_pred CCCCCCeECCCCCC
Confidence 3 3467999984
No 82
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=84.19 E-value=0.45 Score=36.88 Aligned_cols=35 Identities=31% Similarity=0.568 Sum_probs=28.0
Q ss_pred ceeEEcCCCCCCccccceeeec-cCCCCCCccccccCC
Q 025507 215 KVWILCNDCGKTSNVQFHVLAQ-KCPNCKSYNTRLTRG 251 (251)
Q Consensus 215 ~~~IlCndC~~~s~~~~h~lg~-kC~~C~SyNT~~~~~ 251 (251)
.+...|.+|+......-. .. +||.|+|.++++++|
T Consensus 71 p~~~~C~~CG~~~e~~~~--~~~~CP~Cgs~~~~i~~G 106 (119)
T 2kdx_A 71 KVELECKDCSHVFKPNAL--DYGVCEKCHSKNVIITQG 106 (119)
T ss_dssp CCEEECSSSSCEECSCCS--TTCCCSSSSSCCCEEEES
T ss_pred cceEEcCCCCCEEeCCCC--CCCcCccccCCCcEEecC
Confidence 467899999988766432 46 899999999998765
No 83
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=81.08 E-value=1.2 Score=31.29 Aligned_cols=46 Identities=20% Similarity=0.390 Sum_probs=31.6
Q ss_pred CCCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhc---CCCCCCCCCcC
Q 025507 138 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---HQYACPICSKS 187 (251)
Q Consensus 138 ~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~---~~~~CP~Cr~~ 187 (251)
....|.||.+ ..+-+.=-.|...||..|+++.|.. +.-.||.|+..
T Consensus 11 ~~~~C~vC~~----~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGD----GTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSC----CTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCC----CCeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 3467999975 2221111268899999999987764 34679999854
No 84
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=80.55 E-value=0.12 Score=39.92 Aligned_cols=83 Identities=20% Similarity=0.534 Sum_probs=46.0
Q ss_pred CCCCcceecC--------CcceeeccCCCcce-----eccc-------cccccccCCCCCCCCcchhhhcccCCceeEE-
Q 025507 100 DGCGICRIGG--------CDNFFHCNKCRCCY-----SMLL-------KNSHPCVEGAMHHDCPVCCEYLFETRQDVIV- 158 (251)
Q Consensus 100 ~~CgiCR~g~--------~~~~fHC~~C~~c~-----~~~l-------~~~H~C~e~~~~~~CpICle~lf~s~~~~~~- 158 (251)
+.|+||..|+ +++...|+.|+.-+ .+.+ ...=.|.+= ..|.||... ++...++.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C---~~C~~C~~~--~~~~~ll~C 76 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIEC---KSCILCGTS--ENDDQLLFC 76 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGG---CCCTTTTCC--TTTTTEEEC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCcccc---CccCccccc--CCCCceEEc
Confidence 3466665543 45788888887544 3321 111222211 257888763 11222222
Q ss_pred cCCCCcccHHHHHHHHhc---CCCCCCCCCcC
Q 025507 159 LPCGHTIHKNCLKEMREH---HQYACPICSKS 187 (251)
Q Consensus 159 lpCgH~fH~~Ci~~wl~~---~~~~CP~Cr~~ 187 (251)
-.|...||..|+.+=|.. +.-.||.|...
T Consensus 77 d~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 77 DDCDRGYHMYCLNPPVAEPPEGSWSCHLCWEL 108 (114)
T ss_dssp SSSCCEEETTTSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCccccccccCCCccCCCCCCeECccccch
Confidence 278899999999974432 34568888643
No 85
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=78.03 E-value=2.3 Score=33.84 Aligned_cols=50 Identities=24% Similarity=0.494 Sum_probs=34.0
Q ss_pred cCCCCCCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHH----------hcCCCCCCCCCcC
Q 025507 134 VEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMR----------EHHQYACPICSKS 187 (251)
Q Consensus 134 ~e~~~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl----------~~~~~~CP~Cr~~ 187 (251)
.|+..+..|.||.+ +++-+.-=.|...||.+||.+-+ ..+.-.|++|+-+
T Consensus 52 d~Dg~~~~C~vC~d----GG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 52 DSDGMDEQCRWCAE----GGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp CTTSCBSSCTTTCC----CSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCCCcCeecCC----CCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 34566788999996 33211112688999999999752 1245789999854
No 86
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=77.59 E-value=3.8 Score=30.78 Aligned_cols=56 Identities=18% Similarity=0.419 Sum_probs=41.5
Q ss_pred cCCCCCCCCcchhhhcccCCceeEEc---CCCCcccHHHHHHHHhcCCCCCCCCCcCcc
Q 025507 134 VEGAMHHDCPVCCEYLFETRQDVIVL---PCGHTIHKNCLKEMREHHQYACPICSKSVC 189 (251)
Q Consensus 134 ~e~~~~~~CpICle~lf~s~~~~~~l---pCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~ 189 (251)
+.......|.||-|++-.....-+.. -|+-..++.|++.-.+..+..||.|+..+.
T Consensus 11 ~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 11 LKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred ccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 44455679999999754433322222 578899999999988878889999998775
No 87
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=75.63 E-value=3.1 Score=31.45 Aligned_cols=69 Identities=19% Similarity=0.578 Sum_probs=34.6
Q ss_pred ceeecCCCCcccccc--ccCcCCCCccceEecCcccccc-CCCCCCeeecCCC---CcceecC-CcceeeccCCCcceec
Q 025507 53 NQVICSLCGTEQKVQ--QVCVNCGVCMGEYFCESCKLFD-DDTSKKQYHCDGC---GICRIGG-CDNFFHCNKCRCCYSM 125 (251)
Q Consensus 53 ~~v~C~~C~~~q~~~--~~C~~Cg~~f~~y~C~~C~~~d-~~~~k~~~HC~~C---giCR~g~-~~~~fHC~~C~~c~~~ 125 (251)
++.+|..|+...... ..|..|+..|=. .|--.. .......+.|+.| .+|+.++ .+....|+.|+.-|-+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~----~Cl~~~~~~~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~ 81 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHG----MCLDIAVTPLKRAGWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYHT 81 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECT----TTTTCCCCTTTSTTCCCTTTCCCTTTCCCSCCTTEEECSSSCCEEEG
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcCh----HHhCCccccccccCccCCcCCcccccCccCCCCCeeECCCCCcHHhH
Confidence 455666666554321 345555544321 221111 1112345666654 4555554 3468888888866544
No 88
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=71.30 E-value=0.73 Score=35.21 Aligned_cols=29 Identities=28% Similarity=0.698 Sum_probs=20.4
Q ss_pred EcCCCCcccHHHHHHHHhc-------CCCCCCCCCc
Q 025507 158 VLPCGHTIHKNCLKEMREH-------HQYACPICSK 186 (251)
Q Consensus 158 ~lpCgH~fH~~Ci~~wl~~-------~~~~CP~Cr~ 186 (251)
-.-|...+|..|+....+. ..+.||.|+.
T Consensus 78 C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 78 CCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp ETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred eeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 3579999999998764321 1367999984
No 89
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=71.21 E-value=2 Score=32.77 Aligned_cols=9 Identities=33% Similarity=0.955 Sum_probs=4.5
Q ss_pred ceEecCccc
Q 025507 78 GEYFCESCK 86 (251)
Q Consensus 78 ~~y~C~~C~ 86 (251)
+.|||..|+
T Consensus 80 vdYFC~~ch 88 (101)
T 2jne_A 80 VDYFCQHGH 88 (101)
T ss_dssp EEEEETTTT
T ss_pred cchhhccCC
Confidence 345555554
No 90
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=67.90 E-value=0.81 Score=31.38 Aligned_cols=50 Identities=26% Similarity=0.470 Sum_probs=31.4
Q ss_pred CCCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHh----cCCCCCCCCCcC
Q 025507 138 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMRE----HHQYACPICSKS 187 (251)
Q Consensus 138 ~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~----~~~~~CP~Cr~~ 187 (251)
....||||.....+...-+.--.|...||..|+..-.. ...+.||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 45679999874222221122226889999999875322 146889999753
No 91
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=65.51 E-value=3.2 Score=28.29 Aligned_cols=47 Identities=26% Similarity=0.576 Sum_probs=31.3
Q ss_pred CCCCCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhc---CCCCCCCCCc
Q 025507 136 GAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---HQYACPICSK 186 (251)
Q Consensus 136 ~~~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~---~~~~CP~Cr~ 186 (251)
...+..|.||.+. .+-+.--.|.-.||..|+.+-+.. +.-.||.|.+
T Consensus 8 ~~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 3456789999862 221111267889999999985432 3567999975
No 92
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=61.80 E-value=2.6 Score=34.23 Aligned_cols=32 Identities=28% Similarity=0.748 Sum_probs=23.8
Q ss_pred cceEecCccccccCCCCCCeeecCCCCcceec
Q 025507 77 MGEYFCESCKLFDDDTSKKQYHCDGCGICRIG 108 (251)
Q Consensus 77 f~~y~C~~C~~~d~~~~k~~~HC~~CgiCR~g 108 (251)
-..|-|+.|.+=--...++-|||+.||+|---
T Consensus 96 k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~ 127 (143)
T 2dkt_A 96 KRQYHCESCGICRIGPKEDFFHCLKCNLCLTT 127 (143)
T ss_dssp SSEEEETTTTEEEESCGGGEEEETTTTEEEEG
T ss_pred CceecCCCCCceeccCCcCcEECCcCCeeecc
Confidence 45577776666544557899999999999653
No 93
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=60.49 E-value=5.1 Score=25.96 Aligned_cols=45 Identities=24% Similarity=0.651 Sum_probs=27.9
Q ss_pred CCcchhhhcccCCceeEE-cCCCCcccHHHHHHHHhc---CCCCCCCCCcC
Q 025507 141 DCPVCCEYLFETRQDVIV-LPCGHTIHKNCLKEMREH---HQYACPICSKS 187 (251)
Q Consensus 141 ~CpICle~lf~s~~~~~~-lpCgH~fH~~Ci~~wl~~---~~~~CP~Cr~~ 187 (251)
.|.||.+. .+...++. -.|.-.||..|+.+=|.. +...||.|+..
T Consensus 2 ~C~vC~~~--~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKK--GEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCS--SCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCC--CCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 47788752 11222222 268899999999864432 34679999753
No 94
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=59.01 E-value=6.7 Score=26.49 Aligned_cols=21 Identities=29% Similarity=0.811 Sum_probs=11.7
Q ss_pred ccccCcCCCCc------cceEecCccc
Q 025507 66 VQQVCVNCGVC------MGEYFCESCK 86 (251)
Q Consensus 66 ~~~~C~~Cg~~------f~~y~C~~C~ 86 (251)
....||.||.. |++++|++|.
T Consensus 17 ~~~fCPkCG~~~~ma~~~dr~~C~kCg 43 (55)
T 2k4x_A 17 KHRFCPRCGPGVFLAEHADRYSCGRCG 43 (55)
T ss_dssp SSCCCTTTTTTCCCEECSSEEECTTTC
T ss_pred ccccCcCCCCceeEeccCCEEECCCCC
Confidence 34567777752 3455555553
No 95
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=58.53 E-value=2.5 Score=28.84 Aligned_cols=48 Identities=21% Similarity=0.450 Sum_probs=31.1
Q ss_pred CCCCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhc---CCCCCCCCCcCc
Q 025507 137 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---HQYACPICSKSV 188 (251)
Q Consensus 137 ~~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~---~~~~CP~Cr~~~ 188 (251)
..+..|.||.+. .+-+.--.|.-.||..|+.+-|.. +.-.||.|+...
T Consensus 7 ~~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC----CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 446779999852 211111257889999999974432 346799998643
No 96
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=56.89 E-value=5.3 Score=26.48 Aligned_cols=10 Identities=30% Similarity=0.896 Sum_probs=7.0
Q ss_pred ccccCcCCCC
Q 025507 66 VQQVCVNCGV 75 (251)
Q Consensus 66 ~~~~C~~Cg~ 75 (251)
.-..||.||+
T Consensus 18 ~~k~CP~CG~ 27 (50)
T 3j20_Y 18 KNKFCPRCGP 27 (50)
T ss_dssp SSEECSSSCS
T ss_pred ecccCCCCCC
Confidence 3467888877
No 97
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.90 E-value=6.8 Score=28.10 Aligned_cols=65 Identities=22% Similarity=0.476 Sum_probs=38.0
Q ss_pred CcceeeccCCCcceeccccccccccCCCCCCCCcchhhhcccCCceeEE-cCCCCcccHHHHHHHHhc---C-CCCCCCC
Q 025507 110 CDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIV-LPCGHTIHKNCLKEMREH---H-QYACPIC 184 (251)
Q Consensus 110 ~~~~fHC~~C~~c~~~~l~~~H~C~e~~~~~~CpICle~lf~s~~~~~~-lpCgH~fH~~Ci~~wl~~---~-~~~CP~C 184 (251)
+.++..|+.|+.= ..=.|. +..|.||... ++...++. =.|.-.||..|+.+=|.. + .-.||.|
T Consensus 7 ~~~~~~c~~C~~~------~~w~C~----~c~C~vC~~~--~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C 74 (77)
T 2e6s_A 7 GRNDTECDLCGGD------PEKKCH----SCSCRVCGGK--HEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSC 74 (77)
T ss_dssp CCCCCCCTTTCSC------SSSCCS----SSSCSSSCCC--CCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTT
T ss_pred ccCCccChhhcCC------CCeECC----CCCCcCcCCc--CCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCc
Confidence 3566666666541 123343 2368888852 22222222 168899999999964432 2 4579988
Q ss_pred Cc
Q 025507 185 SK 186 (251)
Q Consensus 185 r~ 186 (251)
..
T Consensus 75 ~~ 76 (77)
T 2e6s_A 75 KT 76 (77)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 98
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=49.88 E-value=4 Score=34.24 Aligned_cols=47 Identities=17% Similarity=0.440 Sum_probs=32.2
Q ss_pred CCCCCCCcchhhhcccCCceeEE-cCCCCcccHHHHHHHHhc---CCCCCCCCCcC
Q 025507 136 GAMHHDCPVCCEYLFETRQDVIV-LPCGHTIHKNCLKEMREH---HQYACPICSKS 187 (251)
Q Consensus 136 ~~~~~~CpICle~lf~s~~~~~~-lpCgH~fH~~Ci~~wl~~---~~~~CP~Cr~~ 187 (251)
...+..|.||.+ +++ ++. =.|.-.||..|+.+-+.. +...||.|+..
T Consensus 4 d~~~~~C~~C~~----~g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 4 DPNEDWCAVCQN----GGD-LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp CSSCSSBTTTCC----CEE-EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCC----CCc-eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 345678999985 222 211 167899999999886553 34679999964
No 99
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=49.25 E-value=4.2 Score=28.56 Aligned_cols=46 Identities=24% Similarity=0.515 Sum_probs=30.8
Q ss_pred CCCcchhhhcccCCceeEEc--CCCCcccHHHHHHHHhc---CCCCCCCCCcCc
Q 025507 140 HDCPVCCEYLFETRQDVIVL--PCGHTIHKNCLKEMREH---HQYACPICSKSV 188 (251)
Q Consensus 140 ~~CpICle~lf~s~~~~~~l--pCgH~fH~~Ci~~wl~~---~~~~CP~Cr~~~ 188 (251)
..|+||... . .. ..+++ .|.-.||..|+..-+.. ..+.||.|+..+
T Consensus 19 ~~C~~C~~~-~-~~-~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 19 WICPGCNKP-D-DG-SPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp ECBTTTTBC-C-SS-CCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred cCCCCCCCC-C-CC-CCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 469999863 2 22 22333 68899999999875432 358899998543
No 100
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=42.52 E-value=6.2 Score=25.90 Aligned_cols=45 Identities=20% Similarity=0.345 Sum_probs=26.1
Q ss_pred CCcchhhhcccCCceeEEc-CCCCcccHHHHHHHH---hcCCCCCCCCC
Q 025507 141 DCPVCCEYLFETRQDVIVL-PCGHTIHKNCLKEMR---EHHQYACPICS 185 (251)
Q Consensus 141 ~CpICle~lf~s~~~~~~l-pCgH~fH~~Ci~~wl---~~~~~~CP~Cr 185 (251)
.|.||..+..++..-+.-- .|.-.||..|+.--. ....+.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 5778876432221111112 588899999986421 12568999985
No 101
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=41.99 E-value=17 Score=25.58 Aligned_cols=44 Identities=20% Similarity=0.490 Sum_probs=28.5
Q ss_pred CCCCCcchhhhcccCCceeEEc--C--CC-CcccHHHHHHHHhc---CCCCCCCCCcCc
Q 025507 138 MHHDCPVCCEYLFETRQDVIVL--P--CG-HTIHKNCLKEMREH---HQYACPICSKSV 188 (251)
Q Consensus 138 ~~~~CpICle~lf~s~~~~~~l--p--Cg-H~fH~~Ci~~wl~~---~~~~CP~Cr~~~ 188 (251)
....| ||... .. + .++. . |. ..||..|+. |.. +.+.||.|+...
T Consensus 15 ~~~~C-~C~~~-~~-g--~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQV-SY-G--EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCC-SC-S--SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCC-CC-C--CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 34567 89863 21 2 2333 4 55 699999998 332 457899998654
No 102
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=41.84 E-value=25 Score=26.01 Aligned_cols=48 Identities=23% Similarity=0.552 Sum_probs=30.5
Q ss_pred CCCcchhhhcccCCceeEEc--CCCCcccHHHHHHHHhc--CCCCCCCCCcCccch
Q 025507 140 HDCPVCCEYLFETRQDVIVL--PCGHTIHKNCLKEMREH--HQYACPICSKSVCDM 191 (251)
Q Consensus 140 ~~CpICle~lf~s~~~~~~l--pCgH~fH~~Ci~~wl~~--~~~~CP~Cr~~~~~~ 191 (251)
..| ||... .+. ..++. .|.-.||..|+..=+.. ..+.||.|+..-.+.
T Consensus 29 vrC-iC~~~-~~~--~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~~~~~ 80 (98)
T 2lv9_A 29 TRC-ICGFT-HDD--GYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPRNLDK 80 (98)
T ss_dssp CCC-TTSCC-SCS--SCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSSCCCH
T ss_pred EEe-ECCCc-cCC--CcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCCCCCH
Confidence 357 78753 222 23333 68899999999763322 358899998655443
No 103
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=41.00 E-value=13 Score=29.90 Aligned_cols=23 Identities=30% Similarity=0.910 Sum_probs=16.6
Q ss_pred cccccCcC--CCC--c----cceEecCcccc
Q 025507 65 KVQQVCVN--CGV--C----MGEYFCESCKL 87 (251)
Q Consensus 65 ~~~~~C~~--Cg~--~----f~~y~C~~C~~ 87 (251)
.....||+ ||+ - |.++||++|.+
T Consensus 116 ~~~~~c~~~~cg~g~fma~h~~r~~cgkc~~ 146 (152)
T 3u5c_f 116 KLRRECSNPTCGAGVFLANHKDRLYCGKCHS 146 (152)
T ss_dssp CCSCBCCSTTSCSSSBEEECSSCEEESSSSS
T ss_pred ECcCcCCCccCCCceEecccCCCcccCCCce
Confidence 34578999 987 3 45788888864
No 104
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=40.98 E-value=13 Score=30.97 Aligned_cols=50 Identities=18% Similarity=0.547 Sum_probs=31.8
Q ss_pred CCCcchhhhcccCCc-eeEEc---CCCCcccHHHHHHH------Hh----cCCCCCCCCCcCccc
Q 025507 140 HDCPVCCEYLFETRQ-DVIVL---PCGHTIHKNCLKEM------RE----HHQYACPICSKSVCD 190 (251)
Q Consensus 140 ~~CpICle~lf~s~~-~~~~l---pCgH~fH~~Ci~~w------l~----~~~~~CP~Cr~~~~~ 190 (251)
..||||... .++.+ ....+ .|...||..|...- ++ ...|.||.|+..-..
T Consensus 3 ~~CpiC~k~-Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 3 NFCPLCDKC-YDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp CBCTTTCCB-CTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred CcCCCCcCc-cCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 469999874 33322 11222 57899999998531 11 026999999987654
No 105
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.60 E-value=2.5 Score=28.25 Aligned_cols=46 Identities=24% Similarity=0.558 Sum_probs=29.2
Q ss_pred CCCCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhc---CCCCCCCCCc
Q 025507 137 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---HQYACPICSK 186 (251)
Q Consensus 137 ~~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~---~~~~CP~Cr~ 186 (251)
..+..|.||.+. ..-+.--.|.-.||..|+.+-|.. +...||.|..
T Consensus 7 ~~~~~C~vC~~~----g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS----SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC----CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 346789999862 211111268899999999974432 3456887753
No 106
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=40.41 E-value=7.8 Score=31.71 Aligned_cols=45 Identities=18% Similarity=0.457 Sum_probs=30.6
Q ss_pred CCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhc---CCCCCCCCCcC
Q 025507 139 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---HQYACPICSKS 187 (251)
Q Consensus 139 ~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~---~~~~CP~Cr~~ 187 (251)
+..|.||.+ +++-+.-=.|.-.||..|+.+-+.. +...||.|+..
T Consensus 4 ~~~C~~C~~----~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 4 EDWCAVCQN----GGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp CSSCTTTCC----CSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCccccCCC----CCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 567999985 2221111267899999999876553 34679999964
No 107
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=40.35 E-value=20 Score=33.37 Aligned_cols=69 Identities=17% Similarity=0.442 Sum_probs=45.2
Q ss_pred ccCCCcceeccccccccccCCCCCCCCcchhhhcccCCceeEEc--CCCCcccHHHHHHHHhc---------CCCCCCCC
Q 025507 116 CNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVL--PCGHTIHKNCLKEMREH---------HQYACPIC 184 (251)
Q Consensus 116 C~~C~~c~~~~l~~~H~C~e~~~~~~CpICle~lf~s~~~~~~l--pCgH~fH~~Ci~~wl~~---------~~~~CP~C 184 (251)
--.|..|...-+.....-.|+..+..|.||-+ +++-+.-= .|...|+..||+.++.. ..-.|=+|
T Consensus 70 v~lC~~Ck~~y~~~~f~~D~DG~~~yCr~C~~----Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C 145 (386)
T 2pv0_B 70 GGICAPCKDKFLDALFLYDDDGYQSYCSICCS----GETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLC 145 (386)
T ss_dssp SBCCHHHHHHHHTTTTCBCSSSSBCSCTTTCC----CSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTT
T ss_pred cchhhHHHHHHhccCcccCCCCCcccceEcCC----CCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEc
Confidence 44455555544444555567778899999996 23212212 68899999999998731 34578888
Q ss_pred CcCc
Q 025507 185 SKSV 188 (251)
Q Consensus 185 r~~~ 188 (251)
.-.-
T Consensus 146 ~p~p 149 (386)
T 2pv0_B 146 LPSS 149 (386)
T ss_dssp SSCC
T ss_pred CCcc
Confidence 8553
No 108
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=39.54 E-value=19 Score=25.41 Aligned_cols=49 Identities=20% Similarity=0.370 Sum_probs=29.1
Q ss_pred CCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHh----cCCCCCCCCCcCc
Q 025507 139 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMRE----HHQYACPICSKSV 188 (251)
Q Consensus 139 ~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~----~~~~~CP~Cr~~~ 188 (251)
...| ||.....+...-+.--.|.-.||..|+.--.. ...+.||.|+...
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 3456 88763211221122226889999999964211 2468899999754
No 109
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=39.41 E-value=26 Score=32.45 Aligned_cols=48 Identities=15% Similarity=0.416 Sum_probs=34.7
Q ss_pred CCCCcchhhhcccCCceeEEcCCCCc--ccHHHHHHHHh-cCCCCCCCCCcCcc
Q 025507 139 HHDCPVCCEYLFETRQDVIVLPCGHT--IHKNCLKEMRE-HHQYACPICSKSVC 189 (251)
Q Consensus 139 ~~~CpICle~lf~s~~~~~~lpCgH~--fH~~Ci~~wl~-~~~~~CP~Cr~~~~ 189 (251)
...|||=+..|. .+++...|.|. |-.+=+..+.. .....||+|.+.+.
T Consensus 249 SL~CPlS~~ri~---~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRMK---YPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBCS---SEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eecCCCcccccc---ccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 357998776543 37788899998 77666666543 35678999999875
No 110
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=38.15 E-value=29 Score=32.04 Aligned_cols=47 Identities=23% Similarity=0.492 Sum_probs=34.6
Q ss_pred CCCcchhhhcccCCceeEEcCCCCc--ccHHHHHHHHhc-CCCCCCCCCcCcc
Q 025507 140 HDCPVCCEYLFETRQDVIVLPCGHT--IHKNCLKEMREH-HQYACPICSKSVC 189 (251)
Q Consensus 140 ~~CpICle~lf~s~~~~~~lpCgH~--fH~~Ci~~wl~~-~~~~CP~Cr~~~~ 189 (251)
..|||=+..|. .+++...|.|. |-.+=+..+... ...+||+|.+.+.
T Consensus 216 L~CPlS~~ri~---~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLT---IPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCS---SEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeCCCccceec---cCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 46998876543 37788899998 777766665443 4578999999875
No 111
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=36.90 E-value=44 Score=20.31 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=9.8
Q ss_pred CCCCCCCCcCccchh
Q 025507 178 QYACPICSKSVCDMS 192 (251)
Q Consensus 178 ~~~CP~Cr~~~~~~~ 192 (251)
.+.|++|.+.+....
T Consensus 4 ~~~C~~C~~~f~~~~ 18 (57)
T 3uk3_C 4 SRECSYCGKFFRSNY 18 (57)
T ss_dssp -CBCTTTCCBCSCHH
T ss_pred CccCCCCcchhCChH
Confidence 367888877776543
No 112
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=36.44 E-value=19 Score=25.59 Aligned_cols=25 Identities=20% Similarity=0.470 Sum_probs=18.7
Q ss_pred ccceeecCCCCccccccccCcCCCCc
Q 025507 51 EVNQVICSLCGTEQKVQQVCVNCGVC 76 (251)
Q Consensus 51 ~~~~v~C~~C~~~q~~~~~C~~Cg~~ 76 (251)
...+..|..|...+ ..+.|||||..
T Consensus 8 ~~~~~AC~~C~~~~-~~~~CPnC~s~ 32 (69)
T 1ryq_A 8 GSSEKACRHCHYIT-SEDRCPVCGSR 32 (69)
T ss_dssp ---CEEETTTCBEE-SSSSCTTTCCC
T ss_pred CchhhhHHhCCccc-cCCcCCCccCC
Confidence 34688999999987 67899999843
No 113
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=35.62 E-value=13 Score=27.56 Aligned_cols=47 Identities=19% Similarity=0.470 Sum_probs=31.6
Q ss_pred CCCCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhc---CCCCCCCCCcC
Q 025507 137 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---HQYACPICSKS 187 (251)
Q Consensus 137 ~~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~---~~~~CP~Cr~~ 187 (251)
..+..|.||.+. ++-+.--.|.-.||..|+.+=|.. +.-.||.|...
T Consensus 23 ~n~~~C~vC~~~----g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP----GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS----SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC----CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 446789999862 221111267889999999886543 34679999853
No 114
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=35.16 E-value=5.6 Score=26.79 Aligned_cols=46 Identities=24% Similarity=0.549 Sum_probs=30.0
Q ss_pred CCCCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhc---CCCCCCCCCc
Q 025507 137 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---HQYACPICSK 186 (251)
Q Consensus 137 ~~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~---~~~~CP~Cr~ 186 (251)
..+..|.||.+. +.-+.--.|.-.||..|+.+-|.. +...||.|..
T Consensus 3 ~~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 3 IHEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCCSSCTTTCCC----SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCCcCCCCC----CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 346789999862 221111268899999999974432 3456988864
No 115
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=34.54 E-value=46 Score=22.67 Aligned_cols=28 Identities=18% Similarity=0.536 Sum_probs=22.2
Q ss_pred CcccceeecCCCCccccc-cccCcCCCCc
Q 025507 49 RHEVNQVICSLCGTEQKV-QQVCVNCGVC 76 (251)
Q Consensus 49 r~~~~~v~C~~C~~~q~~-~~~C~~Cg~~ 76 (251)
.+....++|+.|+...|+ +..|-.||..
T Consensus 14 k~~~~k~ICrkC~ARnp~~A~~CRKCg~~ 42 (56)
T 2ayj_A 14 QRVFLKKVCRKCGALNPIRATKCRRCHST 42 (56)
T ss_dssp TCSCCCEEETTTCCEECTTCSSCTTTCCC
T ss_pred HHHhchhhhccccCcCCcccccccCCCCC
Confidence 334468999999999986 7889888854
No 116
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=34.05 E-value=13 Score=21.79 Aligned_cols=30 Identities=27% Similarity=0.585 Sum_probs=16.5
Q ss_pred CCCCCcchhhhcccCCceeEEcCCCCcccHHHH
Q 025507 138 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCL 170 (251)
Q Consensus 138 ~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci 170 (251)
+...||.|....+.. +.+. .=|..||..|+
T Consensus 2 m~~~C~~C~k~Vy~~-Ek~~--~~g~~~Hk~CF 31 (31)
T 1zfo_A 2 MNPNCARCGKIVYPT-EKVN--CLDKFWHKACF 31 (31)
T ss_dssp CCCBCSSSCSBCCGG-GCCC--SSSSCCCGGGC
T ss_pred CCCcCCccCCEEecc-eeEE--ECCeEecccCC
Confidence 345677777655432 2222 23677777763
No 117
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=34.04 E-value=18 Score=22.09 Aligned_cols=14 Identities=36% Similarity=0.883 Sum_probs=11.3
Q ss_pred CCCCCCCcCccchh
Q 025507 179 YACPICSKSVCDMS 192 (251)
Q Consensus 179 ~~CP~Cr~~~~~~~ 192 (251)
+.||+|.+.+...+
T Consensus 6 FiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 6 FICPQCMKSLGSAD 19 (34)
T ss_dssp EECTTTCCEESSHH
T ss_pred cCCcHHHHHcCCHH
Confidence 78999999888643
No 118
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=33.99 E-value=17 Score=29.90 Aligned_cols=64 Identities=19% Similarity=0.610 Sum_probs=40.2
Q ss_pred CCcceeccccccccccCCCCCCCCcchhhhcccCCceeEEc---CCCCcccHHHHHHHHhc---------CCCCCCCCCc
Q 025507 119 CRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVL---PCGHTIHKNCLKEMREH---------HQYACPICSK 186 (251)
Q Consensus 119 C~~c~~~~l~~~H~C~e~~~~~~CpICle~lf~s~~~~~~l---pCgH~fH~~Ci~~wl~~---------~~~~CP~Cr~ 186 (251)
|..|...-+.....=.|+..+..|.||.+ ++ .++.- .|...|+.+||+.++.. ..-.|=+|.-
T Consensus 59 C~~Ck~~y~e~~f~~DeDG~~~yC~wC~~----Gg-~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 59 CQNCKNCFLECAYQYDDDGYQSYCTICCG----GR-EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp CHHHHHHHHHHTTCBCTTSSBSSCTTTSC----CS-EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred hHHHHHHHhhcccccCCCCCcceeeEecC----CC-eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 33444333333444466778899999996 23 33332 47889999999998753 2234777764
Q ss_pred C
Q 025507 187 S 187 (251)
Q Consensus 187 ~ 187 (251)
.
T Consensus 134 ~ 134 (159)
T 3a1b_A 134 K 134 (159)
T ss_dssp S
T ss_pred c
Confidence 3
No 119
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=33.66 E-value=36 Score=23.06 Aligned_cols=42 Identities=21% Similarity=0.524 Sum_probs=28.2
Q ss_pred CCCCCcchhhhccc---CCceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCccc
Q 025507 138 MHHDCPVCCEYLFE---TRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 190 (251)
Q Consensus 138 ~~~~CpICle~lf~---s~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~~ 190 (251)
....|+.|.+.+.. ....+..+ |..+|.+| ++|-.|++++..
T Consensus 14 ~~~~C~~C~~~I~~~g~~~~~~~a~--~~~~H~~C---------F~C~~C~~~L~~ 58 (77)
T 2egq_A 14 VAKKCAGCKNPITGFGKGSSVVAYE--GQSWHDYC---------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCCCSSSCCCCCCCSSCCCEEEET--TEEEETTT---------CBCSSSCCBCTT
T ss_pred hCccCcccCCcccCCCCCceeEEEC--cceeCccc---------CEehhcCCCCCC
Confidence 34679999987664 22333333 77888765 568899988763
No 120
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=33.51 E-value=35 Score=23.22 Aligned_cols=15 Identities=20% Similarity=0.516 Sum_probs=8.6
Q ss_pred cceeeccCCCcceec
Q 025507 111 DNFFHCNKCRCCYSM 125 (251)
Q Consensus 111 ~~~fHC~~C~~c~~~ 125 (251)
+.-|.|..|+.-+..
T Consensus 62 ~~~~~C~~C~~~f~~ 76 (96)
T 2dmd_A 62 ERPFKCQICPYASRN 76 (96)
T ss_dssp CCCEECSSSSCEESS
T ss_pred CCCccCCCCCCccCC
Confidence 445666666665543
No 121
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=33.24 E-value=28 Score=31.27 Aligned_cols=26 Identities=27% Similarity=0.604 Sum_probs=21.3
Q ss_pred cceeecCCCCccccc-cccCcCCCCcc
Q 025507 52 VNQVICSLCGTEQKV-QQVCVNCGVCM 77 (251)
Q Consensus 52 ~~~v~C~~C~~~q~~-~~~C~~Cg~~f 77 (251)
.+-+.|+.|+++=.. -..|++||..-
T Consensus 206 ~R~l~Cs~C~t~W~~~R~~C~~Cg~~~ 232 (309)
T 2fiy_A 206 LRYLSCSLCACEWHYVRIKCSHCEESK 232 (309)
T ss_dssp EEEEEETTTCCEEECCTTSCSSSCCCS
T ss_pred cEEEEeCCCCCEEeecCcCCcCCCCCC
Confidence 357899999999874 57899999873
No 122
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=32.19 E-value=17 Score=26.92 Aligned_cols=44 Identities=20% Similarity=0.554 Sum_probs=27.7
Q ss_pred CCCCCcchhhhcccCCceeEEc--C--CC-CcccHHHHHHHHhc---CCCCCCCCCcCc
Q 025507 138 MHHDCPVCCEYLFETRQDVIVL--P--CG-HTIHKNCLKEMREH---HQYACPICSKSV 188 (251)
Q Consensus 138 ~~~~CpICle~lf~s~~~~~~l--p--Cg-H~fH~~Ci~~wl~~---~~~~CP~Cr~~~ 188 (251)
....| ||.+..+ + .++. . |. ..||..|+. |.. +.+.||.|+...
T Consensus 35 e~~yC-iC~~~~~--g--~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSY--G--EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCC--S--CCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCC--C--CEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 34567 8987322 2 2222 3 55 689999998 332 468899998654
No 123
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=32.03 E-value=5.5 Score=27.45 Aligned_cols=46 Identities=20% Similarity=0.489 Sum_probs=30.0
Q ss_pred CCCCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhc---CCCCCCCCCc
Q 025507 137 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---HQYACPICSK 186 (251)
Q Consensus 137 ~~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~---~~~~CP~Cr~ 186 (251)
..+..|.||.+. .+-+.--.|.-.||..|+.+-|.. +...||.|..
T Consensus 6 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG----GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC----SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCC----CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 346789999862 221111268889999999864432 3456988874
No 124
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=31.76 E-value=14 Score=21.62 Aligned_cols=16 Identities=31% Similarity=0.831 Sum_probs=12.6
Q ss_pred CCCCCCCCcCccchhH
Q 025507 178 QYACPICSKSVCDMSK 193 (251)
Q Consensus 178 ~~~CP~Cr~~~~~~~~ 193 (251)
.++||+|+..+.|+..
T Consensus 3 k~~CpvCk~q~Pd~kt 18 (28)
T 2jvx_A 3 DFCCPKCQYQAPDMDT 18 (28)
T ss_dssp CEECTTSSCEESSHHH
T ss_pred cccCccccccCcChHH
Confidence 4689999998887643
No 125
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=31.64 E-value=34 Score=24.93 Aligned_cols=26 Identities=19% Similarity=0.570 Sum_probs=14.7
Q ss_pred eeecCCCCccccccccCcCCCCccce
Q 025507 54 QVICSLCGTEQKVQQVCVNCGVCMGE 79 (251)
Q Consensus 54 ~v~C~~C~~~q~~~~~C~~Cg~~f~~ 79 (251)
...|..|+..-+....||.||.++..
T Consensus 18 ~~~C~~C~~~~~~~afCPeCgq~Le~ 43 (81)
T 2jrp_A 18 TAHCETCAKDFSLQALCPDCRQPLQV 43 (81)
T ss_dssp EEECTTTCCEEEEEEECSSSCSCCCE
T ss_pred ceECccccccCCCcccCcchhhHHHH
Confidence 34466666655543366666666544
No 126
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=31.53 E-value=18 Score=26.38 Aligned_cols=33 Identities=24% Similarity=0.510 Sum_probs=23.1
Q ss_pred ccccCcCCCCccceEecCccccccCCCCCCeeecCCCCcceecC
Q 025507 66 VQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGG 109 (251)
Q Consensus 66 ~~~~C~~Cg~~f~~y~C~~C~~~d~~~~k~~~HC~~CgiCR~g~ 109 (251)
..-.||+||... +| ++...+++|+.||-=-.||
T Consensus 26 ~~y~Cp~CG~~~---------v~--r~atGiW~C~~Cg~~~agg 58 (83)
T 1vq8_Z 26 EDHACPNCGEDR---------VD--RQGTGIWQCSYCDYKFTGG 58 (83)
T ss_dssp SCEECSSSCCEE---------EE--EEETTEEEETTTCCEEECC
T ss_pred ccCcCCCCCCcc---------ee--ccCCCeEECCCCCCEecCC
Confidence 345688887642 12 3457899999999888876
No 127
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=31.15 E-value=31 Score=25.95 Aligned_cols=26 Identities=31% Similarity=0.701 Sum_probs=19.2
Q ss_pred CCCCcccHHHHHH------HHhcCCCCCCCCC
Q 025507 160 PCGHTIHKNCLKE------MREHHQYACPICS 185 (251)
Q Consensus 160 pCgH~fH~~Ci~~------wl~~~~~~CP~Cr 185 (251)
.|+..||..||.. .+....-.||.|+
T Consensus 31 ~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 31 DCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp TTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred hcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 7899999999952 2333456788886
No 128
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=30.81 E-value=15 Score=26.76 Aligned_cols=50 Identities=22% Similarity=0.510 Sum_probs=31.5
Q ss_pred CCCCCcchhhhcccCCceeEEc--CCCCcccHHHHHHHH-hcCCCCCCCCCcCc
Q 025507 138 MHHDCPVCCEYLFETRQDVIVL--PCGHTIHKNCLKEMR-EHHQYACPICSKSV 188 (251)
Q Consensus 138 ~~~~CpICle~lf~s~~~~~~l--pCgH~fH~~Ci~~wl-~~~~~~CP~Cr~~~ 188 (251)
.+..|.||.+.-.++. ..+++ .|.-.||..|+..-+ -.+.-.||.|....
T Consensus 24 ~~~~C~vC~~~~s~~~-~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 24 EDAVCSICMDGESQNS-NVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCSSCCSSSSCSE-EEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCcCCcCCCCCCCCC-CCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 4578999996311122 22233 678899999998642 22456798887543
No 129
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=29.36 E-value=29 Score=22.91 Aligned_cols=10 Identities=30% Similarity=0.737 Sum_probs=6.0
Q ss_pred CeeecCCCCc
Q 025507 95 KQYHCDGCGI 104 (251)
Q Consensus 95 ~~~HC~~Cgi 104 (251)
+--+|+.||.
T Consensus 22 P~IrCpyCGy 31 (48)
T 4ayb_P 22 PGVRCPYCGY 31 (48)
T ss_dssp SSSCCTTTCC
T ss_pred CCcccCccCc
Confidence 4556666664
No 130
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=29.34 E-value=19 Score=24.78 Aligned_cols=24 Identities=21% Similarity=0.521 Sum_probs=14.9
Q ss_pred ceeecCCCCcc--ccccccCcCCCCc
Q 025507 53 NQVICSLCGTE--QKVQQVCVNCGVC 76 (251)
Q Consensus 53 ~~v~C~~C~~~--q~~~~~C~~Cg~~ 76 (251)
++.+|.+|... ++..-.||.|++.
T Consensus 10 ~~~~C~vC~~~~~~~akY~CPrC~~r 35 (59)
T 1x4s_A 10 PAGPCGFCPAGEVQPARYTCPRCNAP 35 (59)
T ss_dssp CCEEECSSCTTCCEEECEECTTTCCE
T ss_pred CCCcCcCCCCCcCCCccccCcCCCCC
Confidence 35678888763 3445567777654
No 131
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=29.14 E-value=28 Score=24.60 Aligned_cols=8 Identities=38% Similarity=1.145 Sum_probs=4.8
Q ss_pred eecCCCCc
Q 025507 97 YHCDGCGI 104 (251)
Q Consensus 97 ~HC~~Cgi 104 (251)
-+|..||-
T Consensus 46 irCp~CG~ 53 (70)
T 1twf_L 46 VRCKDCGH 53 (70)
T ss_dssp TCCSSSCC
T ss_pred ccCCCCCc
Confidence 36666664
No 132
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.03 E-value=31 Score=24.39 Aligned_cols=30 Identities=27% Similarity=0.524 Sum_probs=17.9
Q ss_pred CCcccceeecCCCCccccccccCcCCCCcc
Q 025507 48 PRHEVNQVICSLCGTEQKVQQVCVNCGVCM 77 (251)
Q Consensus 48 ~r~~~~~v~C~~C~~~q~~~~~C~~Cg~~f 77 (251)
+.+......|..|...-...+.|+.|++.|
T Consensus 9 ~~y~~~i~~C~IC~~~i~~g~~C~~C~h~f 38 (74)
T 2ct0_A 9 ETYPDAVKICNICHSLLIQGQSCETCGIRM 38 (74)
T ss_dssp CCCSSSSCBCSSSCCBCSSSEECSSSCCEE
T ss_pred hhccCCCCcCcchhhHcccCCccCCCCchh
Confidence 334445666777776655555666665554
No 133
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=29.00 E-value=51 Score=16.58 Aligned_cols=16 Identities=31% Similarity=0.671 Sum_probs=12.3
Q ss_pred CCCCCCCCcCccchhH
Q 025507 178 QYACPICSKSVCDMSK 193 (251)
Q Consensus 178 ~~~CP~Cr~~~~~~~~ 193 (251)
.+.|++|.+.+.....
T Consensus 2 ~~~C~~C~k~f~~~~~ 17 (30)
T 1klr_A 2 TYQCQYCEFRSADSSN 17 (30)
T ss_dssp CCCCSSSSCCCSCSHH
T ss_pred CccCCCCCCccCCHHH
Confidence 3789999999886543
No 134
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=28.95 E-value=22 Score=24.33 Aligned_cols=19 Identities=21% Similarity=0.543 Sum_probs=14.3
Q ss_pred ecCCCCccccccccCcCCCC
Q 025507 56 ICSLCGTEQKVQQVCVNCGV 75 (251)
Q Consensus 56 ~C~~C~~~q~~~~~C~~Cg~ 75 (251)
.|+.|+..++.. .|||||.
T Consensus 3 AC~~C~~v~~~~-~CpnC~~ 21 (59)
T 3lpe_B 3 ACLKCKYLTNDE-ICPICHS 21 (59)
T ss_dssp EETTTCBEESSS-BCTTTCC
T ss_pred ccccCCcccCCC-CCCCCCC
Confidence 478888887654 6888886
No 135
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=28.64 E-value=42 Score=20.41 Aligned_cols=13 Identities=23% Similarity=0.524 Sum_probs=7.8
Q ss_pred CCCCCCCcCccch
Q 025507 179 YACPICSKSVCDM 191 (251)
Q Consensus 179 ~~CP~Cr~~~~~~ 191 (251)
+.|++|.+.+...
T Consensus 2 ~~C~~C~~~f~~~ 14 (57)
T 1bbo_A 2 YICEECGIRXKKP 14 (57)
T ss_dssp CBCTTTCCBCSSH
T ss_pred CcCCCCcCcCCCH
Confidence 4566666666553
No 136
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=28.53 E-value=8.6 Score=26.83 Aligned_cols=49 Identities=24% Similarity=0.479 Sum_probs=29.5
Q ss_pred CCCCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHh--cCCCCCCCCCcC
Q 025507 137 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMRE--HHQYACPICSKS 187 (251)
Q Consensus 137 ~~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~--~~~~~CP~Cr~~ 187 (251)
.....| ||... .++..-+.--.|.-.||..|+..-.. ...+.||.|+.+
T Consensus 17 ~~~~~C-iC~~~-~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~s 67 (68)
T 3o70_A 17 QGLVTC-FCMKP-FAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDS 67 (68)
T ss_dssp TTCCCS-TTCCC-CTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHTC
T ss_pred CCceEe-ECCCc-CCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCCC
Confidence 345567 88763 22211111236889999999975322 145889988753
No 137
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=28.24 E-value=37 Score=21.78 Aligned_cols=10 Identities=20% Similarity=0.557 Sum_probs=5.1
Q ss_pred cCcCCCCccc
Q 025507 69 VCVNCGVCMG 78 (251)
Q Consensus 69 ~C~~Cg~~f~ 78 (251)
.|+.||..|.
T Consensus 16 ~C~~C~k~F~ 25 (62)
T 1vd4_A 16 KCPVCSSTFT 25 (62)
T ss_dssp ECSSSCCEEE
T ss_pred cCCCCCchhc
Confidence 4555555554
No 138
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=28.09 E-value=34 Score=23.01 Aligned_cols=27 Identities=22% Similarity=0.512 Sum_probs=12.6
Q ss_pred cceEecCccccccCCCCCCeeecCCCC
Q 025507 77 MGEYFCESCKLFDDDTSKKQYHCDGCG 103 (251)
Q Consensus 77 f~~y~C~~C~~~d~~~~k~~~HC~~Cg 103 (251)
-+..+|.+|+.-+++....+.-||.|+
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~ 30 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCG 30 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSC
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCC
Confidence 344455555544333334455555443
No 139
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=27.79 E-value=34 Score=22.54 Aligned_cols=42 Identities=17% Similarity=0.485 Sum_probs=27.3
Q ss_pred CCCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCccc
Q 025507 138 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 190 (251)
Q Consensus 138 ~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~~ 190 (251)
....|+.|.+.+.... .++. .=|..+|.+|+ +|-.|++++.+
T Consensus 10 ~~~~C~~C~~~i~~~e-~~~~-~~~~~~H~~CF---------~C~~C~~~L~~ 51 (72)
T 3f6q_B 10 ASATCERCKGGFAPAE-KIVN-SNGELYHEQCF---------VCAQCFQQFPE 51 (72)
T ss_dssp TTCBCTTTCCBCCTTC-EEEE-ETTEEEETTTS---------SCTTTCCCCGG
T ss_pred CCccchhcCccccCCc-eEEE-eCcCeeCcCCC---------cccCCCCCCCC
Confidence 4567999988665432 2221 33777887764 68888888765
No 140
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=27.72 E-value=25 Score=24.09 Aligned_cols=29 Identities=28% Similarity=0.677 Sum_probs=22.2
Q ss_pred eeEEcCCCCCCccccceeeeccCCCCCCcccccc
Q 025507 216 VWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLT 249 (251)
Q Consensus 216 ~~IlCndC~~~s~~~~h~lg~kC~~C~SyNT~~~ 249 (251)
..+.|..|++. ...| +-|+.||.|+-+++
T Consensus 29 ~l~~c~~cGe~--~~~H---~vc~~CG~Y~gr~V 57 (60)
T 3v2d_5 29 TLVPCPECKAM--KPPH---TVCPECGYYAGRKV 57 (60)
T ss_dssp CCEECTTTCCE--ECTT---SCCTTTCEETTEEC
T ss_pred ceeECCCCCCe--ecce---EEcCCCCcCCCEEe
Confidence 46889999974 3344 45999999999875
No 141
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=27.07 E-value=11 Score=24.10 Aligned_cols=9 Identities=44% Similarity=0.752 Sum_probs=4.5
Q ss_pred CeeecCCCC
Q 025507 95 KQYHCDGCG 103 (251)
Q Consensus 95 ~~~HC~~Cg 103 (251)
.+|.|+.||
T Consensus 39 ~~~~C~~C~ 47 (66)
T 2drp_A 39 KVYPCPFCF 47 (66)
T ss_dssp CCEECTTTC
T ss_pred cCeECCCCC
Confidence 445555544
No 142
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=26.18 E-value=24 Score=29.61 Aligned_cols=22 Identities=32% Similarity=0.812 Sum_probs=16.0
Q ss_pred cccCcCCCCc------cceEecCccccc
Q 025507 67 QQVCVNCGVC------MGEYFCESCKLF 88 (251)
Q Consensus 67 ~~~C~~Cg~~------f~~y~C~~C~~~ 88 (251)
...||+||.. +.+++|++|.+.
T Consensus 113 ~~~Cp~Cg~g~fma~h~dR~~CGkC~~t 140 (189)
T 2xzm_9 113 QKGCPKCGPGIFMAKHYDRHYCGKCHLT 140 (189)
T ss_dssp SEECSTTCSSCEEEECSSCEEETTTCCC
T ss_pred cccCCccCCCccccCccCCCccCCceeE
Confidence 3679999965 467888888643
No 143
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=25.68 E-value=38 Score=23.17 Aligned_cols=29 Identities=31% Similarity=0.652 Sum_probs=22.6
Q ss_pred eeEEcCCCCCCccccceeeeccCCCCCCcccccc
Q 025507 216 VWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLT 249 (251)
Q Consensus 216 ~~IlCndC~~~s~~~~h~lg~kC~~C~SyNT~~~ 249 (251)
..+.|..|++. ...| +-|+.||-|+-+++
T Consensus 29 ~l~~c~~cG~~--~~pH---~vc~~CG~Y~gr~v 57 (60)
T 2zjr_Z 29 NLTECPQCHGK--KLSH---HICPNCGYYDGRQV 57 (60)
T ss_dssp CCEECTTTCCE--ECTT---BCCTTTCBSSSBCS
T ss_pred CceECCCCCCE--eCCc---eEcCCCCcCCCEEe
Confidence 56889999977 2334 46999999999875
No 144
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=25.10 E-value=39 Score=25.86 Aligned_cols=33 Identities=24% Similarity=0.486 Sum_probs=23.6
Q ss_pred ceeEEcCCCCCCccccceeeeccCCCCCCccccc
Q 025507 215 KVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRL 248 (251)
Q Consensus 215 ~~~IlCndC~~~s~~~~h~lg~kC~~C~SyNT~~ 248 (251)
.....|.+|+-...... ...-+|+.|+|-|...
T Consensus 65 v~p~~C~~CG~~F~~~~-~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 65 IKPAQCRKCGFVFKAEI-NIPSRCPKCKSEWIEE 97 (105)
T ss_dssp ECCCBBTTTCCBCCCCS-SCCSSCSSSCCCCBCC
T ss_pred EECcChhhCcCeecccC-CCCCCCcCCCCCccCC
Confidence 45678999998862111 2346999999999764
No 145
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=24.94 E-value=52 Score=16.29 Aligned_cols=14 Identities=36% Similarity=0.959 Sum_probs=11.1
Q ss_pred CCCCCCCcCccchh
Q 025507 179 YACPICSKSVCDMS 192 (251)
Q Consensus 179 ~~CP~Cr~~~~~~~ 192 (251)
+.|++|.+.+....
T Consensus 2 ~~C~~C~k~f~~~~ 15 (27)
T 1znf_A 2 YKCGLCERSFVEKS 15 (27)
T ss_dssp CBCSSSCCBCSSHH
T ss_pred ccCCCCCCcCCCHH
Confidence 67999999887643
No 146
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.91 E-value=37 Score=22.72 Aligned_cols=41 Identities=20% Similarity=0.467 Sum_probs=27.2
Q ss_pred CCCCcchhhhccc--CCceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCccc
Q 025507 139 HHDCPVCCEYLFE--TRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 190 (251)
Q Consensus 139 ~~~CpICle~lf~--s~~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~~ 190 (251)
...|+.|.+.+.. +.. + +..=|..+|.+| ++|-.|++++..
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~-~~a~~~~wH~~C---------F~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTK-Y-ISFEERQWHNDC---------FNCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSCS-C-EECSSCEECTTT---------CBCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCcc-e-EEECCcccCccc---------CEeccCCCcCCC
Confidence 4578889887654 222 2 223588888766 568899987753
No 147
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=24.84 E-value=17 Score=30.14 Aligned_cols=45 Identities=20% Similarity=0.503 Sum_probs=29.2
Q ss_pred CCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHHhc---CCCCCCCCCcC
Q 025507 139 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---HQYACPICSKS 187 (251)
Q Consensus 139 ~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl~~---~~~~CP~Cr~~ 187 (251)
+..|.+|.+. ++-+.--.|.-.||..|+.+=+.. +.-.||.|+..
T Consensus 2 ~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP----GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC----SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC----CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4578888852 221112257789999999864432 45679999854
No 148
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=24.53 E-value=1.1e+02 Score=21.67 Aligned_cols=13 Identities=23% Similarity=0.881 Sum_probs=6.6
Q ss_pred cceeeccCCCcce
Q 025507 111 DNFFHCNKCRCCY 123 (251)
Q Consensus 111 ~~~fHC~~C~~c~ 123 (251)
+....|+.|..-|
T Consensus 39 ~~ll~CD~C~~~y 51 (77)
T 3shb_A 39 DKQLMCDECDMAF 51 (77)
T ss_dssp GGEEECTTTCCEE
T ss_pred cceeEeCCCCCcc
Confidence 3455555555433
No 149
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=24.32 E-value=45 Score=24.73 Aligned_cols=32 Identities=28% Similarity=0.775 Sum_probs=24.0
Q ss_pred CCCCCCcchhhhcccCCceeEEcC---CCCcccHHHHHHH
Q 025507 137 AMHHDCPVCCEYLFETRQDVIVLP---CGHTIHKNCLKEM 173 (251)
Q Consensus 137 ~~~~~CpICle~lf~s~~~~~~lp---CgH~fH~~Ci~~w 173 (251)
..+..|+||-. +++.. .+| |+-.||..||.+.
T Consensus 13 ~~D~~C~VC~~--~t~~~---l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEV--WTAES---LFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCC--CCSSC---CSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccc--ccccc---eeccccccccccHhhcccc
Confidence 35789999974 55432 445 5899999999996
No 150
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=24.21 E-value=30 Score=22.86 Aligned_cols=13 Identities=31% Similarity=0.812 Sum_probs=8.2
Q ss_pred CCCCCCCcCccch
Q 025507 179 YACPICSKSVCDM 191 (251)
Q Consensus 179 ~~CP~Cr~~~~~~ 191 (251)
|.|++|.+.+...
T Consensus 5 y~C~~C~k~F~~~ 17 (60)
T 4gzn_C 5 FFCNFCGKTYRDA 17 (60)
T ss_dssp EECTTTCCEESSH
T ss_pred ccCCCCCCEeCCH
Confidence 5666777666653
No 151
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=24.19 E-value=34 Score=30.08 Aligned_cols=19 Identities=32% Similarity=1.125 Sum_probs=12.4
Q ss_pred ccCcCCCC----------ccceEecCccc
Q 025507 68 QVCVNCGV----------CMGEYFCESCK 86 (251)
Q Consensus 68 ~~C~~Cg~----------~f~~y~C~~C~ 86 (251)
..||+||. +.|..||+.|+
T Consensus 35 ~yCPnCG~~~l~~f~nN~PVaDF~C~~C~ 63 (257)
T 4esj_A 35 SYCPNCGNNPLNHFENNRPVADFYCNHCS 63 (257)
T ss_dssp CCCTTTCCSSCEEC----CCCEEECTTTC
T ss_pred CcCCCCCChhhhhccCCCcccccccCCcc
Confidence 57899988 34555666664
No 152
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=24.07 E-value=8.1 Score=30.54 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=19.7
Q ss_pred EcCCCCCCccccceeeeccCCC--CCCcc
Q 025507 219 LCNDCGKTSNVQFHVLAQKCPN--CKSYN 245 (251)
Q Consensus 219 lCndC~~~s~~~~h~lg~kC~~--C~SyN 245 (251)
.|.+|....++ ||-|.|++ |+.|+
T Consensus 36 ~C~~C~~~~~L---wlCL~CG~vgCgr~~ 61 (129)
T 2g45_A 36 KCSKCDMRENL---WLNLTDGSILCGRRY 61 (129)
T ss_dssp CCSSSSCCSSE---EEETTTCCEEECCBC
T ss_pred cCccccCcCce---EEeccCCccccCccc
Confidence 59999988766 99999996 87763
No 153
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=23.94 E-value=68 Score=22.32 Aligned_cols=49 Identities=20% Similarity=0.466 Sum_probs=31.0
Q ss_pred CCCCCCCcchhhhcccCCceeEEc--CCCCcccHHHHHHHH-hcCCCCCCCCC
Q 025507 136 GAMHHDCPVCCEYLFETRQDVIVL--PCGHTIHKNCLKEMR-EHHQYACPICS 185 (251)
Q Consensus 136 ~~~~~~CpICle~lf~s~~~~~~l--pCgH~fH~~Ci~~wl-~~~~~~CP~Cr 185 (251)
...+..|.||.+.-.++.. .+++ .|.-.||..|+..-+ -.+.-.||.|+
T Consensus 13 ~~~~~~C~vC~~~~s~~~~-~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~ 64 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSN-VILFCDMCNLAVHQECYGVPYIPEGQWLCRHCL 64 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSS-CEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCC-CEEECCCCCCccccccCCCCcCCCCCcCCccCc
Confidence 3456789999863212222 2333 788999999998632 22346788886
No 154
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=23.92 E-value=16 Score=25.91 Aligned_cols=48 Identities=23% Similarity=0.511 Sum_probs=30.1
Q ss_pred CCCCCcchhhhcccCCceeEEc----CCCCcccHHHHHHHHh--------cCCCCCCCCCcCcc
Q 025507 138 MHHDCPVCCEYLFETRQDVIVL----PCGHTIHKNCLKEMRE--------HHQYACPICSKSVC 189 (251)
Q Consensus 138 ~~~~CpICle~lf~s~~~~~~l----pCgH~fH~~Ci~~wl~--------~~~~~CP~Cr~~~~ 189 (251)
....| ||... .+.+ .++- .|...||..|+.--.. ...|.||.|+....
T Consensus 15 ~~~~C-iC~~~-~~~g--~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~ 74 (78)
T 1wew_A 15 IKVRC-VCGNS-LETD--SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSG 74 (78)
T ss_dssp CCCCC-SSCCC-CCCS--CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCS
T ss_pred CCEEe-ECCCc-CCCC--CEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccC
Confidence 34577 78863 2222 3332 6889999999974321 13688999986543
No 155
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=23.68 E-value=46 Score=22.80 Aligned_cols=35 Identities=14% Similarity=0.415 Sum_probs=22.0
Q ss_pred CCCCCcchhhhcccCCceeEEc-CCCCcccHHHHHH
Q 025507 138 MHHDCPVCCEYLFETRQDVIVL-PCGHTIHKNCLKE 172 (251)
Q Consensus 138 ~~~~CpICle~lf~s~~~~~~l-pCgH~fH~~Ci~~ 172 (251)
....|++|..+..++..-+.-- .|.-.||..|+.-
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvgl 42 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGM 42 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTC
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccCC
Confidence 3567999998644433222223 6888899999753
No 156
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=23.60 E-value=40 Score=22.24 Aligned_cols=32 Identities=28% Similarity=0.730 Sum_probs=18.0
Q ss_pred ccCcCCCCccceEecCcccc-c--cCCCCCCeeecCCCC
Q 025507 68 QVCVNCGVCMGEYFCESCKL-F--DDDTSKKQYHCDGCG 103 (251)
Q Consensus 68 ~~C~~Cg~~f~~y~C~~C~~-~--d~~~~k~~~HC~~Cg 103 (251)
..||.||..-+.|+ .+ + .|++..-.|.|..||
T Consensus 16 ~~Cp~Cg~~~~~~~----q~Q~rsadep~T~fy~C~~Cg 50 (57)
T 1qyp_A 16 ITCPKCGNDTAYWW----EMQTRAGDEPSTIFYKCTKCG 50 (57)
T ss_dssp CCCTTTCCSEEEEE----EECCSSSSCSSEEEEEESSSC
T ss_pred eECCCCCCCEEEEE----EeecccCCCCCcEEEEcCCCC
Confidence 35777777666665 11 1 233445566666665
No 157
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=23.56 E-value=1.2e+02 Score=30.20 Aligned_cols=88 Identities=25% Similarity=0.573 Sum_probs=49.5
Q ss_pred cccccCCCCCCCCcchhhhccc----CC--ceeEEcCCCCcccHHHHHHHHhcCCCCCCCCCcCccchhHHHHHHHHH-H
Q 025507 130 SHPCVEGAMHHDCPVCCEYLFE----TR--QDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDRE-I 202 (251)
Q Consensus 130 ~H~C~e~~~~~~CpICle~lf~----s~--~~~~~lpCgH~fH~~Ci~~wl~~~~~~CP~Cr~~~~~~~~~~~~ld~~-i 202 (251)
+-+|....-...||+|.-.+.+ ++ ....-|.||--|+.+|++.+.+. +|+-.+.-..|+..-.. .
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~c~~c~~~~~~~--------~~~~~~~~~~w~~~~~~~~ 75 (776)
T 4gut_A 4 SRKCEKAGCTATCPVCFASASERCAKNGYTSRWYHLSCGEHFCNECFDHYYRS--------HKDGYDKYTTWKKIWTSNG 75 (776)
T ss_dssp BSSBSSTTCCCSSCCBSCCCSTTCCTTSCBSCEEEEETTEEEEHHHHHHHHST--------TSTTHHHHHHHHHHHHHTC
T ss_pred ccccccCCCcccccHHHHHHHHHHHhCCCCcceeEeccccchhHHHHHHHhcc--------CcchhHHHHHHHHHHHhCC
Confidence 4566665566788888743311 11 22456899999999999998874 23333333456543221 1
Q ss_pred hcCCCCHhhhcC---ceeEEcC--CCCC
Q 025507 203 AATPMPEAYLNK---KVWILCN--DCGK 225 (251)
Q Consensus 203 ~~~p~P~e~~~~---~~~IlCn--dC~~ 225 (251)
.++|.+..|-+. .-++.|. +|++
T Consensus 76 ~~~~~~~~~~~~~~l~~~~~c~~~~c~~ 103 (776)
T 4gut_A 76 KTEPSPKAFMADQQLPYWVQCTKPECRK 103 (776)
T ss_dssp CSCCCHHHHHHHHTSCCEEECCCTTTCC
T ss_pred ccchhHHHHHHhccCcHhhhcCcccccc
Confidence 122222212111 2468899 9986
No 158
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.43 E-value=39 Score=22.89 Aligned_cols=16 Identities=38% Similarity=0.966 Sum_probs=8.0
Q ss_pred CcCCCCccceEecCccc
Q 025507 70 CVNCGVCMGEYFCESCK 86 (251)
Q Consensus 70 C~~Cg~~f~~y~C~~C~ 86 (251)
|.-|+. .++|.|+.|.
T Consensus 15 C~vC~~-~~kY~CPrC~ 30 (56)
T 2yqq_A 15 CVICLE-KPKYRCPACR 30 (56)
T ss_dssp CTTTCS-CCSEECTTTC
T ss_pred cCcCcC-CCeeeCCCCC
Confidence 444444 5555555554
No 159
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=23.31 E-value=23 Score=25.44 Aligned_cols=32 Identities=25% Similarity=0.460 Sum_probs=18.6
Q ss_pred CCCCCCcchhhhcccCCceeEEcCCCCcccHHHH
Q 025507 137 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCL 170 (251)
Q Consensus 137 ~~~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci 170 (251)
.....|..|.+.+..+...+. .=|..||.+|+
T Consensus 64 ~~~~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF 95 (101)
T 2cup_A 64 EDSPKCKGCFKAIVAGDQNVE--YKGTVWHKDCF 95 (101)
T ss_dssp CCCCBCSSSCCBCCSSSCEEE--SSSCEEETTTC
T ss_pred hcCCccccCCCccccCCeEEE--eCCcchHHhCC
Confidence 345578888876543222222 23788887764
No 160
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=23.25 E-value=49 Score=20.75 Aligned_cols=11 Identities=36% Similarity=1.081 Sum_probs=5.6
Q ss_pred CCCeeecCCCC
Q 025507 93 SKKQYHCDGCG 103 (251)
Q Consensus 93 ~k~~~HC~~Cg 103 (251)
.|+-|.|.+||
T Consensus 25 ~~qg~~C~~C~ 35 (50)
T 1ptq_A 25 VKQGLKCEDCG 35 (50)
T ss_dssp SSCEEEETTTC
T ss_pred CCccCEeCCCC
Confidence 34555555554
No 161
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=23.13 E-value=64 Score=16.12 Aligned_cols=15 Identities=13% Similarity=0.795 Sum_probs=11.8
Q ss_pred CCCCCCCCcCccchh
Q 025507 178 QYACPICSKSVCDMS 192 (251)
Q Consensus 178 ~~~CP~Cr~~~~~~~ 192 (251)
.+.|++|.+.+....
T Consensus 2 ~~~C~~C~~~f~~~~ 16 (29)
T 1ard_A 2 SFVCEVCTRAFARQE 16 (29)
T ss_dssp CCBCTTTCCBCSSHH
T ss_pred CeECCCCCcccCCHH
Confidence 378999999988643
No 162
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.53 E-value=72 Score=15.78 Aligned_cols=16 Identities=25% Similarity=0.694 Sum_probs=12.0
Q ss_pred CCCCCCCCcCccchhH
Q 025507 178 QYACPICSKSVCDMSK 193 (251)
Q Consensus 178 ~~~CP~Cr~~~~~~~~ 193 (251)
.+.|+.|.+.+.....
T Consensus 2 ~~~C~~C~~~f~~~~~ 17 (29)
T 2m0e_A 2 EHKCPHCDKKFNQVGN 17 (29)
T ss_dssp CCCCSSCCCCCCTTTH
T ss_pred CCcCCCCCcccCCHHH
Confidence 3789999999876443
No 163
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=22.44 E-value=51 Score=22.02 Aligned_cols=12 Identities=25% Similarity=0.778 Sum_probs=7.6
Q ss_pred cceEecCccccc
Q 025507 77 MGEYFCESCKLF 88 (251)
Q Consensus 77 f~~y~C~~C~~~ 88 (251)
|.+|.|.+|-+.
T Consensus 1 m~~y~C~~CGyv 12 (55)
T 2v3b_B 1 MRKWQCVVCGFI 12 (55)
T ss_dssp CCEEEETTTCCE
T ss_pred CCcEEeCCCCeE
Confidence 456777777543
No 164
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=21.94 E-value=87 Score=16.84 Aligned_cols=16 Identities=31% Similarity=0.810 Sum_probs=12.4
Q ss_pred CCCCCCCCcCccchhH
Q 025507 178 QYACPICSKSVCDMSK 193 (251)
Q Consensus 178 ~~~CP~Cr~~~~~~~~ 193 (251)
.+.|++|.+.+.....
T Consensus 2 p~~C~~C~k~F~~~~~ 17 (33)
T 1rim_A 2 KFACPECPKRFMRSDH 17 (33)
T ss_dssp CCCCSSSCCCCSSHHH
T ss_pred cccCCCCCchhCCHHH
Confidence 3789999999986543
No 165
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=21.56 E-value=75 Score=33.03 Aligned_cols=48 Identities=15% Similarity=0.213 Sum_probs=38.9
Q ss_pred CCCCCCcchhhhcccCCceeEEcCCC-CcccHHHHHHHHhcCCCCCCCCCcCcc
Q 025507 137 AMHHDCPVCCEYLFETRQDVIVLPCG-HTIHKNCLKEMREHHQYACPICSKSVC 189 (251)
Q Consensus 137 ~~~~~CpICle~lf~s~~~~~~lpCg-H~fH~~Ci~~wl~~~~~~CP~Cr~~~~ 189 (251)
..+-.|||=++-| . ++|++|=| +++-+..|..|+.. +.+||+=|.++.
T Consensus 889 P~~F~cPIs~~lM-~---DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~ 937 (968)
T 3m62_A 889 PDEFLDPLMYTIM-K---DPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLK 937 (968)
T ss_dssp CGGGBCTTTCSBC-S---SEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCC
T ss_pred cHHhCCcchhhHH-h---CCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCC
Confidence 3456799988843 3 47789998 69999999999985 579999998875
No 166
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=20.98 E-value=44 Score=21.54 Aligned_cols=31 Identities=16% Similarity=0.273 Sum_probs=18.5
Q ss_pred CCCCCCCCcCccchhHHHHHHHHHHhcCCCC
Q 025507 178 QYACPICSKSVCDMSKVWEKYDREIAATPMP 208 (251)
Q Consensus 178 ~~~CP~Cr~~~~~~~~~~~~ld~~i~~~p~P 208 (251)
.+.|++|.+.+.......+-+..-....|.|
T Consensus 37 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~p 67 (70)
T 1x5w_A 37 PFKCNYCSFDTKQPSNLSKHMKKFHGDMSGP 67 (70)
T ss_dssp SEECSSSSCEESSHHHHHHHHHHHHSSSCCS
T ss_pred CEeCCCCCCccCCHHHHHHHHHHHhCCCCCC
Confidence 4789999999887554433343333334433
No 167
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=20.73 E-value=46 Score=24.20 Aligned_cols=11 Identities=27% Similarity=0.794 Sum_probs=6.5
Q ss_pred cceeeccCCCc
Q 025507 111 DNFFHCNKCRC 121 (251)
Q Consensus 111 ~~~fHC~~C~~ 121 (251)
.-+|+|..|+.
T Consensus 59 ~~~Y~C~~C~f 69 (89)
T 1v5n_A 59 IWSYHCDECDF 69 (89)
T ss_dssp SCEEECTTTCC
T ss_pred CcEEEcCCCCC
Confidence 44566666654
No 168
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=20.61 E-value=60 Score=22.57 Aligned_cols=21 Identities=19% Similarity=0.676 Sum_probs=11.4
Q ss_pred ecCccccccCCCCCCeeecCCCCc
Q 025507 81 FCESCKLFDDDTSKKQYHCDGCGI 104 (251)
Q Consensus 81 ~C~~C~~~d~~~~k~~~HC~~Cgi 104 (251)
||+.|.-+- .++-|.|.+||+
T Consensus 37 ~C~~C~~~l---~~qG~kC~~C~~ 57 (72)
T 2fnf_X 37 WCDLCGREV---LRQALRCANCKF 57 (72)
T ss_dssp BCTTTSSBC---SSCCEECTTSSC
T ss_pred chhhhhHHH---HhCcCccCCCCC
Confidence 455553332 356666666664
No 169
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=20.56 E-value=75 Score=21.05 Aligned_cols=11 Identities=18% Similarity=0.836 Sum_probs=6.4
Q ss_pred CCeeecCCCCc
Q 025507 94 KKQYHCDGCGI 104 (251)
Q Consensus 94 k~~~HC~~Cgi 104 (251)
++-|.|.+||+
T Consensus 34 kqg~kC~~C~~ 44 (59)
T 1rfh_A 34 RQALRCANCKF 44 (59)
T ss_dssp SCCEECTTTSC
T ss_pred hCccEeCCCCC
Confidence 55566666654
No 170
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=20.54 E-value=99 Score=23.29 Aligned_cols=33 Identities=21% Similarity=0.553 Sum_probs=21.5
Q ss_pred cccCcCCCCccceEecCccccc---cCCCCCCeeecCCCC
Q 025507 67 QQVCVNCGVCMGEYFCESCKLF---DDDTSKKQYHCDGCG 103 (251)
Q Consensus 67 ~~~C~~Cg~~f~~y~C~~C~~~---d~~~~k~~~HC~~Cg 103 (251)
...|++||..-+.|| .+- .|++..-.|.|..||
T Consensus 72 ~~~Cp~C~~~~a~~~----q~q~rsade~mt~fy~C~~C~ 107 (113)
T 3h0g_I 72 DKECPRCHQHEAVFY----QTHSRRGDTMMTLIYVCVHCG 107 (113)
T ss_dssp CSCCSSSCCSCEEEE----CCCCSSCCCCCCCEEEESSSC
T ss_pred ccCCCCCCCceEEEE----EEecccCCCCCeeEEEcCCCC
Confidence 357999999877776 222 234555667777666
No 171
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=20.47 E-value=64 Score=19.84 Aligned_cols=13 Identities=15% Similarity=0.907 Sum_probs=8.5
Q ss_pred CCCCCCCcCccch
Q 025507 179 YACPICSKSVCDM 191 (251)
Q Consensus 179 ~~CP~Cr~~~~~~ 191 (251)
+.|++|.+.+...
T Consensus 3 ~~C~~C~~~f~~~ 15 (60)
T 2adr_A 3 FVCEVCTRAFARQ 15 (60)
T ss_dssp BCCTTTCCCBSCH
T ss_pred CcCCCCccccCCH
Confidence 5677777776653
No 172
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=20.29 E-value=52 Score=22.81 Aligned_cols=11 Identities=36% Similarity=0.881 Sum_probs=6.8
Q ss_pred CCeeecCCCCc
Q 025507 94 KKQYHCDGCGI 104 (251)
Q Consensus 94 k~~~HC~~Cgi 104 (251)
.++..|..||-
T Consensus 36 ~~~iRC~~CG~ 46 (63)
T 3h0g_L 36 KEVIRCRECGH 46 (63)
T ss_dssp SSCCCCSSSCC
T ss_pred CCceECCCCCc
Confidence 35566777763
No 173
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=20.26 E-value=56 Score=17.80 Aligned_cols=15 Identities=27% Similarity=0.798 Sum_probs=12.2
Q ss_pred CCCCCCCCcCccchh
Q 025507 178 QYACPICSKSVCDMS 192 (251)
Q Consensus 178 ~~~CP~Cr~~~~~~~ 192 (251)
.+.||+|.+.+....
T Consensus 11 ~~~C~~C~k~f~~~~ 25 (37)
T 1p7a_A 11 PFQCPDCDRSFSRSD 25 (37)
T ss_dssp SBCCTTTCCCBSSHH
T ss_pred CccCCCCCcccCcHH
Confidence 478999999998643
No 174
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=20.26 E-value=91 Score=20.15 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=23.3
Q ss_pred CCCCCCCCCcCccchhHHHHHHHHHHhcCCCCHhhhcCceeEEcCCCCCCcc
Q 025507 177 HQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSN 228 (251)
Q Consensus 177 ~~~~CP~Cr~~~~~~~~~~~~ld~~i~~~p~P~e~~~~~~~IlCndC~~~s~ 228 (251)
..+.|++|.+.+.......+-+..-.. .....|..|+....
T Consensus 28 ~~~~C~~C~~~f~~~~~l~~H~~~h~~-----------~~~~~C~~C~~~f~ 68 (82)
T 2kmk_A 28 RPYPCQYCGKRFHQKSDMKKHTFIHTG-----------EKPHKCQVCGKAFS 68 (82)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHHHHT-----------CCCEECTTTSCEES
T ss_pred CCeeCCcCChhhCCHHHHHHHHHHhcC-----------CCCCcCCCcchhhC
Confidence 357899999888765433222221111 12367888887553
No 175
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=20.18 E-value=25 Score=24.52 Aligned_cols=47 Identities=21% Similarity=0.509 Sum_probs=28.1
Q ss_pred CCCCcchhhhcccCCceeEEcCCCCcccHHHHHHHH--------hcCCCCCCCCCcC
Q 025507 139 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMR--------EHHQYACPICSKS 187 (251)
Q Consensus 139 ~~~CpICle~lf~s~~~~~~lpCgH~fH~~Ci~~wl--------~~~~~~CP~Cr~~ 187 (251)
...| ||... .....-+.--.|.-.||..|+..-. ....+.||.|+..
T Consensus 16 ~~~C-~C~~~-~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYC-ICRQP-HNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCS-TTCCC-CCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCEE-ECCCc-cCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 3567 78763 2222111112688999999985321 1246899999853
Done!