BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025508
(251 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4BD2|A Chain A, Bax Domain Swapped Dimer In Complex With Bidbh3
pdb|4BD6|A Chain A, Bax Domain Swapped Dimer In Complex With Baxbh3
pdb|4BD7|A Chain A, Bax Domain Swapped Dimer Induced By Octylmaltoside
pdb|4BD7|B Chain B, Bax Domain Swapped Dimer Induced By Octylmaltoside
pdb|4BD7|C Chain C, Bax Domain Swapped Dimer Induced By Octylmaltoside
pdb|4BD7|D Chain D, Bax Domain Swapped Dimer Induced By Octylmaltoside
pdb|4BD8|A Chain A, Bax Domain Swapped Dimer Induced By Bimbh3 With Chaps
pdb|4BD8|D Chain D, Bax Domain Swapped Dimer Induced By Bimbh3 With Chaps
pdb|4BD8|C Chain C, Bax Domain Swapped Dimer Induced By Bimbh3 With Chaps
pdb|4BD8|B Chain B, Bax Domain Swapped Dimer Induced By Bimbh3 With Chaps
Length = 174
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 59 ERARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQD 113
+RA E+ E D + + A + L E LKR+ DE L EL+++I ++ D
Sbjct: 33 DRAGRMGGEAPELALDPVPQDASTKKLSESLKRIGDE-LDSNMELQRMIAAVDTD 86
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 28 SEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKE 87
+ ++L S NA+TK R +EI N + EN R+ L LA ++ K
Sbjct: 1426 TTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNN----- 1480
Query: 88 ELKRVNDEHL 97
+ ND H+
Sbjct: 1481 --PKFNDPHV 1488
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 28 SEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKE 87
+ ++L S NA+TK R +EI N + EN R+ L LA ++ K
Sbjct: 1426 TTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNN----- 1480
Query: 88 ELKRVNDEHL 97
+ ND H+
Sbjct: 1481 --PKFNDPHV 1488
>pdb|2Q0Z|X Chain X, Crystal Structure Of Q9p172SEC63 FROM HOMO SAPIENS.
Northeast Structural Genomics Target Hr1979
Length = 339
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 28 SEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKE 87
+ ++L S NA+TK R +EI N + EN R+ L LA ++ K
Sbjct: 30 TTIELFSXSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNN----- 84
Query: 88 ELKRVNDEHL 97
+ ND H+
Sbjct: 85 --PKFNDPHV 92
>pdb|1F16|A Chain A, Solution Structure Of A Pro-Apoptotic Protein Bax
pdb|2K7W|A Chain A, Bax Activation Is Initiated At A Novel Interaction Site
pdb|2LR1|A Chain A, Structural Mechanism For Bax Inhibition By Cytomegalovirus
Protein Vmia
Length = 192
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 59 ERARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQD 113
+RA E+ E D + + A + L E LKR+ DE L EL+++I ++ D
Sbjct: 33 DRAGRMGGEAPELALDPVPQDASTKKLSECLKRIGDE-LDSNMELQRMIAAVDTD 86
>pdb|2RD0|B Chain B, Structure Of A Human P110alpha/p85alpha Complex
pdb|4A55|B Chain B, Crystal Structure Of P110alpha In Complex With Ish2 Of
P85alpha And The Inhibitor Pik-108
Length = 279
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 15 DFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESL 69
++D++YE++ R E+Q+ R++ A + + E C T ER Y E
Sbjct: 141 EYDRLYEEYTRTSQEIQMKRTAIEAFNETIKIFEEQCQT----QERYSKEYIEKF 191
>pdb|2WAM|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Unknown
Function Protein Rv2714
pdb|2WAM|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Unknown
Function Protein Rv2714
pdb|2WAM|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Unknown
Function Protein Rv2714
Length = 351
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 22 DFKRAISEVQLLRSSCNAETKR--REALEITCNTLKKENERARNSYTESLENLADQLERK 79
DF+ +ISE+Q+ S+ N R + E+ T+ + + Y + + L LE+
Sbjct: 205 DFQPSISEIQVPGSASNLLEYRMAQHGHEVVGFTVHVPHYLTQTDYPAAAQAL---LEQV 261
Query: 80 AKCQSLK 86
AK SL+
Sbjct: 262 AKTGSLQ 268
>pdb|3HHM|B Chain B, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha And The Drug Wortmannin
pdb|3HIZ|B Chain B, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha
Length = 373
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 15 DFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESL 69
++D++YE++ R E+Q+ R++ A + + E C T ER Y E
Sbjct: 141 EYDRLYEEYTRTSQEIQMKRTAIEAFNETIKIFEEQCQT----QERYSKEYIEKF 191
>pdb|3L4Q|C Chain C, Structural Insights Into Phosphoinositide 3-Kinase
Activation By The Influenza A Virus Ns1 Protein
pdb|3L4Q|D Chain D, Structural Insights Into Phosphoinositide 3-Kinase
Activation By The Influenza A Virus Ns1 Protein
Length = 170
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 15 DFDQIYEDFKRAISEVQLLRSSCNA 39
++DQ+YE++ R E+Q+ R++ A
Sbjct: 32 EYDQLYEEYTRTSQELQMKRTAIEA 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.126 0.326
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,574,101
Number of Sequences: 62578
Number of extensions: 183588
Number of successful extensions: 696
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 677
Number of HSP's gapped (non-prelim): 59
length of query: 251
length of database: 14,973,337
effective HSP length: 96
effective length of query: 155
effective length of database: 8,965,849
effective search space: 1389706595
effective search space used: 1389706595
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)