Query 025508
Match_columns 251
No_of_seqs 16 out of 18
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 06:34:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025508.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025508hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00038 Filament: Intermediat 98.2 0.0018 3.9E-08 57.5 23.8 193 28-241 103-303 (312)
2 TIGR00606 rad50 rad50. This fa 98.0 0.0071 1.5E-07 64.5 28.0 162 2-166 296-469 (1311)
3 PF00038 Filament: Intermediat 97.8 0.009 1.9E-07 53.1 21.1 194 18-244 72-278 (312)
4 COG1196 Smc Chromosome segrega 97.4 0.23 5E-06 52.8 28.4 205 6-211 245-477 (1163)
5 TIGR02169 SMC_prok_A chromosom 97.3 0.23 5E-06 50.3 31.5 47 118-164 800-846 (1164)
6 PRK02224 chromosome segregatio 97.3 0.26 5.6E-06 49.8 30.2 190 17-207 240-446 (880)
7 TIGR02168 SMC_prok_B chromosom 97.2 0.29 6.2E-06 49.2 31.9 32 171-202 864-895 (1179)
8 TIGR02168 SMC_prok_B chromosom 97.0 0.43 9.3E-06 48.0 29.4 30 9-38 241-270 (1179)
9 COG1196 Smc Chromosome segrega 96.8 1 2.2E-05 48.1 30.8 56 11-66 671-726 (1163)
10 PF12128 DUF3584: Protein of u 96.6 1.4 3.1E-05 47.3 26.7 167 79-245 648-840 (1201)
11 KOG0161 Myosin class II heavy 96.3 2.9 6.2E-05 48.0 29.7 194 7-207 1283-1483(1930)
12 PF09755 DUF2046: Uncharacteri 95.7 2 4.4E-05 41.0 25.3 214 2-249 15-250 (310)
13 PF10174 Cast: RIM-binding pro 95.5 4 8.7E-05 43.0 26.1 124 126-249 503-692 (775)
14 PRK02224 chromosome segregatio 95.4 3.5 7.6E-05 41.9 30.8 9 21-29 165-173 (880)
15 PF12128 DUF3584: Protein of u 95.4 5.1 0.00011 43.3 27.4 118 45-164 681-798 (1201)
16 PHA02562 46 endonuclease subun 95.1 3.3 7.1E-05 39.5 20.2 51 46-96 192-243 (562)
17 KOG0161 Myosin class II heavy 94.9 9.7 0.00021 44.0 29.0 200 12-223 955-1154(1930)
18 PRK03918 chromosome segregatio 94.6 5.9 0.00013 40.1 28.1 82 120-201 388-487 (880)
19 TIGR00606 rad50 rad50. This fa 94.6 8.5 0.00018 41.8 28.9 54 118-171 883-936 (1311)
20 PRK03918 chromosome segregatio 93.9 8 0.00017 39.1 29.7 21 224-244 455-475 (880)
21 KOG4807 F-actin binding protei 93.9 1.2 2.7E-05 44.6 12.8 127 80-210 403-563 (593)
22 PF01576 Myosin_tail_1: Myosin 93.6 0.02 4.2E-07 59.4 0.0 237 6-245 17-281 (859)
23 PF10212 TTKRSYEDQ: Predicted 93.0 6.2 0.00014 40.1 16.2 194 13-241 315-514 (518)
24 KOG4643 Uncharacterized coiled 93.0 17 0.00038 40.1 26.0 156 8-166 111-330 (1195)
25 PRK09039 hypothetical protein; 92.7 3.1 6.7E-05 39.2 13.0 47 115-161 52-98 (343)
26 PF05557 MAD: Mitotic checkpoi 92.7 0.14 3E-06 51.7 4.4 40 206-246 545-584 (722)
27 PF07926 TPR_MLP1_2: TPR/MLP1/ 92.5 5 0.00011 32.7 16.3 128 115-246 2-130 (132)
28 PF06005 DUF904: Protein of un 92.4 2.3 4.9E-05 32.5 9.6 49 14-62 4-52 (72)
29 PF00261 Tropomyosin: Tropomyo 92.3 7.6 0.00016 34.4 19.4 86 115-200 140-231 (237)
30 PF01576 Myosin_tail_1: Myosin 91.3 0.06 1.3E-06 56.0 0.0 189 20-212 235-423 (859)
31 PF13851 GAS: Growth-arrest sp 91.2 7.8 0.00017 34.1 13.0 125 101-247 5-133 (201)
32 KOG0933 Structural maintenance 89.8 37 0.0008 37.7 22.7 187 51-237 220-464 (1174)
33 PF07888 CALCOCO1: Calcium bin 89.5 28 0.0006 35.8 30.3 90 120-209 259-354 (546)
34 PF09726 Macoilin: Transmembra 88.0 37 0.0008 35.5 25.6 105 117-247 546-655 (697)
35 PRK09039 hypothetical protein; 87.7 25 0.00055 33.2 18.5 105 81-186 75-185 (343)
36 TIGR01843 type_I_hlyD type I s 87.7 21 0.00046 32.3 19.8 57 107-163 128-184 (423)
37 PHA02562 46 endonuclease subun 87.5 27 0.00059 33.4 21.9 75 81-155 175-252 (562)
38 PRK01156 chromosome segregatio 87.3 38 0.00083 34.9 24.1 79 21-99 301-382 (895)
39 PRK10884 SH3 domain-containing 87.3 9.8 0.00021 33.9 10.9 80 140-223 96-175 (206)
40 PF09726 Macoilin: Transmembra 87.2 42 0.0009 35.1 21.5 160 29-214 489-656 (697)
41 PF06705 SF-assemblin: SF-asse 87.0 21 0.00046 31.6 26.4 40 8-47 6-60 (247)
42 KOG0996 Structural maintenance 87.0 59 0.0013 36.6 27.4 145 82-240 386-540 (1293)
43 PF08317 Spc7: Spc7 kinetochor 86.6 27 0.00059 32.4 20.4 154 28-203 122-292 (325)
44 PF07888 CALCOCO1: Calcium bin 86.4 42 0.00092 34.5 27.5 89 113-201 280-385 (546)
45 PF05622 HOOK: HOOK protein; 86.3 0.22 4.7E-06 50.3 0.0 114 111-237 262-379 (713)
46 PF08614 ATG16: Autophagy prot 86.2 5.3 0.00011 34.3 8.4 80 115-202 94-173 (194)
47 PF05701 WEMBL: Weak chloropla 86.0 38 0.00083 33.6 27.8 71 171-241 286-357 (522)
48 PF10174 Cast: RIM-binding pro 85.9 52 0.0011 35.0 27.0 184 9-199 109-348 (775)
49 KOG4673 Transcription factor T 85.9 56 0.0012 35.3 22.8 127 108-248 487-625 (961)
50 TIGR01843 type_I_hlyD type I s 85.6 28 0.0006 31.6 17.1 19 78-96 201-219 (423)
51 PF14915 CCDC144C: CCDC144C pr 85.6 36 0.00077 32.8 17.2 151 82-247 8-170 (305)
52 PF10168 Nup88: Nuclear pore c 85.5 51 0.0011 34.5 16.6 23 1-23 530-552 (717)
53 PF15070 GOLGA2L5: Putative go 85.3 49 0.0011 34.2 22.0 137 82-220 89-228 (617)
54 PRK10869 recombination and rep 85.2 44 0.00095 33.5 20.7 203 10-222 153-369 (553)
55 PF10186 Atg14: UV radiation r 85.0 25 0.00053 30.5 17.6 90 133-223 73-162 (302)
56 KOG0977 Nuclear envelope prote 84.8 51 0.0011 34.0 19.6 104 81-186 114-217 (546)
57 PF15397 DUF4618: Domain of un 84.8 34 0.00075 32.0 21.6 145 47-204 11-166 (258)
58 KOG4674 Uncharacterized conser 84.6 88 0.0019 36.6 28.0 176 14-201 66-252 (1822)
59 PF12325 TMF_TATA_bd: TATA ele 83.8 24 0.00052 29.3 12.1 76 47-123 28-103 (120)
60 PF06785 UPF0242: Uncharacteri 83.2 51 0.0011 32.7 18.2 139 47-200 73-214 (401)
61 PF10146 zf-C4H2: Zinc finger- 83.1 36 0.00079 31.0 12.8 69 87-159 35-103 (230)
62 PRK11637 AmiB activator; Provi 82.3 47 0.001 31.6 21.8 19 223-241 235-253 (428)
63 PF00261 Tropomyosin: Tropomyo 82.1 36 0.00078 30.1 25.2 197 18-217 5-227 (237)
64 COG0419 SbcC ATPase involved i 80.8 78 0.0017 33.2 28.1 16 226-241 724-739 (908)
65 PF07798 DUF1640: Protein of u 80.6 35 0.00075 29.0 18.4 13 139-151 140-152 (177)
66 PF08614 ATG16: Autophagy prot 80.5 15 0.00034 31.5 8.9 104 45-166 70-173 (194)
67 PF08317 Spc7: Spc7 kinetochor 80.0 51 0.0011 30.6 17.4 81 79-160 208-292 (325)
68 PF04111 APG6: Autophagy prote 79.9 44 0.00096 31.3 12.3 85 117-202 44-128 (314)
69 PF04111 APG6: Autophagy prote 78.6 53 0.0011 30.8 12.4 102 62-164 25-133 (314)
70 KOG4674 Uncharacterized conser 78.4 1.5E+02 0.0032 34.9 26.4 79 101-183 1246-1324(1822)
71 PRK04406 hypothetical protein; 78.1 15 0.00033 28.1 7.3 50 118-167 6-55 (75)
72 PF05266 DUF724: Protein of un 77.4 51 0.0011 29.1 11.7 74 84-165 107-180 (190)
73 TIGR00634 recN DNA repair prot 76.9 82 0.0018 31.3 24.7 49 10-58 157-205 (563)
74 PRK09343 prefoldin subunit bet 76.8 39 0.00085 27.5 11.6 112 18-133 4-116 (121)
75 COG1579 Zn-ribbon protein, pos 76.6 64 0.0014 29.9 19.4 89 78-167 29-119 (239)
76 PF05010 TACC: Transforming ac 76.5 58 0.0013 29.4 17.1 64 87-161 143-206 (207)
77 PRK02793 phi X174 lysis protei 76.2 15 0.00034 27.7 6.8 48 118-165 3-50 (72)
78 PF04899 MbeD_MobD: MbeD/MobD 76.1 33 0.00071 26.3 9.2 64 99-162 4-67 (70)
79 PLN03229 acetyl-coenzyme A car 75.4 54 0.0012 35.1 12.6 149 76-238 432-614 (762)
80 PF13166 AAA_13: AAA domain 74.9 94 0.002 30.9 22.9 24 5-28 267-290 (712)
81 PF09728 Taxilin: Myosin-like 74.7 76 0.0016 29.8 30.0 211 4-217 19-274 (309)
82 PRK04325 hypothetical protein; 74.1 20 0.00044 27.2 7.0 48 118-165 4-51 (74)
83 TIGR03017 EpsF chain length de 73.9 78 0.0017 29.6 17.2 20 77-96 279-298 (444)
84 PRK02119 hypothetical protein; 73.6 22 0.00047 27.0 7.1 48 118-165 4-51 (73)
85 PF06810 Phage_GP20: Phage min 73.1 21 0.00045 30.4 7.6 58 81-138 28-91 (155)
86 KOG0250 DNA repair protein RAD 73.0 1.6E+02 0.0035 32.9 22.0 190 1-191 204-440 (1074)
87 PF05911 DUF869: Plant protein 72.4 1.4E+02 0.0031 31.9 21.5 175 19-202 500-709 (769)
88 PF05557 MAD: Mitotic checkpoi 72.3 1.2 2.6E-05 45.1 0.0 67 107-181 155-221 (722)
89 PF04102 SlyX: SlyX; InterPro 72.1 22 0.00047 26.4 6.6 46 121-166 2-47 (69)
90 PF07926 TPR_MLP1_2: TPR/MLP1/ 71.9 53 0.0011 26.7 17.1 107 42-159 17-127 (132)
91 PF05529 Bap31: B-cell recepto 71.8 24 0.00051 30.0 7.7 39 164-202 152-190 (192)
92 PF04102 SlyX: SlyX; InterPro 71.1 29 0.00062 25.8 7.1 52 115-166 3-54 (69)
93 KOG0243 Kinesin-like protein [ 70.5 1.8E+02 0.004 32.4 18.5 88 24-111 407-514 (1041)
94 PRK04778 septation ring format 70.4 1.2E+02 0.0026 30.3 27.0 202 46-247 202-437 (569)
95 PF07111 HCR: Alpha helical co 69.8 1.6E+02 0.0035 31.6 20.1 58 161-218 229-294 (739)
96 PF05701 WEMBL: Weak chloropla 69.5 1.3E+02 0.0027 30.1 29.8 185 24-210 154-353 (522)
97 PF04849 HAP1_N: HAP1 N-termin 68.6 1.1E+02 0.0025 29.3 17.6 119 45-181 163-284 (306)
98 PRK00295 hypothetical protein; 68.5 31 0.00068 25.8 6.8 45 121-165 3-47 (68)
99 PRK02793 phi X174 lysis protei 68.0 33 0.00072 25.9 7.0 52 114-165 6-57 (72)
100 PF10211 Ax_dynein_light: Axon 67.3 86 0.0019 27.4 12.0 45 136-180 133-177 (189)
101 PRK11546 zraP zinc resistance 66.8 32 0.0007 29.6 7.4 57 102-158 47-110 (143)
102 PF02403 Seryl_tRNA_N: Seryl-t 66.6 57 0.0012 25.1 8.8 68 11-106 26-93 (108)
103 PRK00295 hypothetical protein; 66.4 40 0.00087 25.2 7.1 49 116-164 5-53 (68)
104 PF14335 DUF4391: Domain of un 66.4 24 0.00052 31.0 6.8 76 13-89 143-221 (221)
105 PRK00736 hypothetical protein; 66.2 37 0.0008 25.4 6.8 46 121-166 3-48 (68)
106 PF12329 TMF_DNA_bd: TATA elem 66.1 49 0.0011 25.1 7.5 51 117-167 13-63 (74)
107 PRK15422 septal ring assembly 66.0 66 0.0014 25.6 8.5 64 14-77 4-77 (79)
108 PF02841 GBP_C: Guanylate-bind 65.9 1.1E+02 0.0023 28.0 13.4 18 8-25 149-166 (297)
109 PRK00846 hypothetical protein; 65.7 38 0.00083 26.4 7.0 48 119-166 9-56 (77)
110 PRK02119 hypothetical protein; 65.5 40 0.00086 25.6 7.0 53 114-166 7-59 (73)
111 PRK04406 hypothetical protein; 65.4 44 0.00096 25.6 7.2 53 113-165 8-60 (75)
112 KOG2129 Uncharacterized conser 65.3 1.7E+02 0.0037 30.1 14.9 52 147-198 249-303 (552)
113 PRK04325 hypothetical protein; 65.0 42 0.00092 25.5 7.1 51 116-166 9-59 (74)
114 PF10481 CENP-F_N: Cenp-F N-te 64.7 1.4E+02 0.0031 28.9 12.4 147 45-200 21-189 (307)
115 PF04859 DUF641: Plant protein 64.5 19 0.00041 30.5 5.6 60 106-165 56-122 (131)
116 PRK10869 recombination and rep 64.3 1.6E+02 0.0036 29.5 14.0 61 6-70 260-320 (553)
117 KOG1029 Endocytic adaptor prot 63.9 2.4E+02 0.0052 31.3 22.3 77 137-214 437-516 (1118)
118 TIGR03007 pepcterm_ChnLen poly 63.6 1.4E+02 0.0031 28.5 16.9 17 79-95 274-290 (498)
119 KOG0612 Rho-associated, coiled 63.1 2.8E+02 0.006 31.8 24.7 93 7-99 587-693 (1317)
120 TIGR03185 DNA_S_dndD DNA sulfu 63.1 1.8E+02 0.0038 29.5 26.9 62 136-197 390-452 (650)
121 PF04136 Sec34: Sec34-like fam 62.5 88 0.0019 26.5 9.3 79 8-90 8-86 (157)
122 PF05377 FlaC_arch: Flagella a 62.5 41 0.00089 25.0 6.3 48 117-164 1-48 (55)
123 PF08581 Tup_N: Tup N-terminal 62.5 72 0.0016 24.8 10.2 69 50-125 5-73 (79)
124 cd07685 F-BAR_Fes The F-BAR (F 62.5 1.2E+02 0.0027 28.3 10.8 59 51-118 100-158 (237)
125 PF12709 Kinetocho_Slk19: Cent 61.3 67 0.0015 25.9 7.8 15 103-117 32-46 (87)
126 PF09730 BicD: Microtubule-ass 61.2 2.3E+02 0.005 30.2 19.2 39 169-208 394-433 (717)
127 PF12711 Kinesin-relat_1: Kine 61.1 63 0.0014 25.8 7.6 51 13-66 16-68 (86)
128 PRK00736 hypothetical protein; 60.8 55 0.0012 24.5 6.9 51 115-165 4-54 (68)
129 PF00804 Syntaxin: Syntaxin; 59.5 65 0.0014 23.3 8.2 59 48-113 13-71 (103)
130 KOG0962 DNA repair protein RAD 59.1 3.2E+02 0.007 31.2 27.6 210 13-222 171-449 (1294)
131 PF06818 Fez1: Fez1; InterPro 59.0 1.4E+02 0.0031 27.1 13.8 143 84-240 14-157 (202)
132 PF09730 BicD: Microtubule-ass 58.9 2.5E+02 0.0055 29.9 16.9 30 20-49 123-164 (717)
133 PF05837 CENP-H: Centromere pr 58.8 92 0.002 24.8 8.7 77 169-245 6-82 (106)
134 PF06818 Fez1: Fez1; InterPro 58.4 1.5E+02 0.0032 27.1 14.4 22 81-102 32-53 (202)
135 PF05667 DUF812: Protein of un 58.1 2.3E+02 0.0051 29.3 18.9 202 7-209 328-544 (594)
136 PRK00846 hypothetical protein; 58.0 89 0.0019 24.4 7.9 55 111-165 8-62 (77)
137 KOG0980 Actin-binding protein 58.0 3E+02 0.0065 30.5 19.6 45 82-126 335-379 (980)
138 PF15254 CCDC14: Coiled-coil d 58.0 2.9E+02 0.0062 30.3 16.7 111 87-205 444-557 (861)
139 PF12240 Angiomotin_C: Angiomo 57.8 15 0.00033 33.5 4.1 33 114-146 134-166 (205)
140 PF07111 HCR: Alpha helical co 57.7 2.7E+02 0.0059 30.0 16.6 131 95-227 141-282 (739)
141 PF05276 SH3BP5: SH3 domain-bi 56.6 1.6E+02 0.0036 27.1 11.8 75 95-170 136-224 (239)
142 PF05483 SCP-1: Synaptonemal c 56.5 2.9E+02 0.0063 29.9 22.2 128 48-179 519-649 (786)
143 KOG4593 Mitotic checkpoint pro 56.4 2.8E+02 0.0062 29.8 23.3 140 81-246 173-317 (716)
144 PF10186 Atg14: UV radiation r 56.3 1.3E+02 0.0029 26.0 16.8 24 47-70 25-48 (302)
145 PRK04778 septation ring format 56.1 2.3E+02 0.0049 28.5 22.3 59 8-66 283-341 (569)
146 KOG0239 Kinesin (KAR3 subfamil 55.9 2.7E+02 0.0058 29.3 17.1 82 19-102 119-204 (670)
147 PRK04863 mukB cell division pr 55.9 3.7E+02 0.008 30.9 24.1 200 2-211 433-651 (1486)
148 KOG0979 Structural maintenance 55.8 3.4E+02 0.0074 30.5 18.5 130 31-175 191-328 (1072)
149 KOG0804 Cytoplasmic Zn-finger 55.7 2.5E+02 0.0054 28.9 14.2 108 59-178 331-440 (493)
150 KOG0250 DNA repair protein RAD 55.6 3.4E+02 0.0075 30.5 28.1 134 46-184 232-376 (1074)
151 PRK10884 SH3 domain-containing 55.3 1.6E+02 0.0034 26.4 11.1 29 142-170 144-172 (206)
152 TIGR01000 bacteriocin_acc bact 54.5 2.1E+02 0.0045 27.6 18.0 26 138-163 237-262 (457)
153 PF13863 DUF4200: Domain of un 54.4 1E+02 0.0022 24.1 11.7 83 81-163 22-107 (126)
154 PF15188 CCDC-167: Coiled-coil 53.9 34 0.00073 27.3 5.0 54 139-204 7-60 (85)
155 PF15456 Uds1: Up-regulated Du 53.8 73 0.0016 26.5 7.2 43 16-58 24-66 (124)
156 PF03962 Mnd1: Mnd1 family; I 53.7 1.5E+02 0.0033 25.9 14.1 118 41-180 61-178 (188)
157 KOG4360 Uncharacterized coiled 53.6 2.9E+02 0.0063 29.0 14.1 115 43-168 157-278 (596)
158 PF10392 COG5: Golgi transport 53.4 1.2E+02 0.0026 24.6 8.6 38 135-172 63-100 (132)
159 PF11262 Tho2: Transcription f 52.1 70 0.0015 29.6 7.6 55 111-165 26-88 (298)
160 KOG0962 DNA repair protein RAD 51.4 4.3E+02 0.0093 30.3 23.2 176 29-214 855-1035(1294)
161 TIGR00219 mreC rod shape-deter 51.3 60 0.0013 29.9 6.9 20 45-64 87-106 (283)
162 PF07798 DUF1640: Protein of u 51.2 1.5E+02 0.0033 25.2 15.3 41 141-181 106-146 (177)
163 KOG0239 Kinesin (KAR3 subfamil 51.0 3.2E+02 0.0069 28.7 17.0 117 98-223 175-291 (670)
164 PF14775 NYD-SP28_assoc: Sperm 51.0 69 0.0015 23.6 5.9 48 5-66 10-57 (60)
165 KOG4807 F-actin binding protei 50.8 1.4E+02 0.003 30.7 9.7 87 96-184 343-432 (593)
166 PF12718 Tropomyosin_1: Tropom 50.8 1.5E+02 0.0033 24.9 16.3 56 191-246 77-140 (143)
167 PF10146 zf-C4H2: Zinc finger- 50.7 2E+02 0.0043 26.3 12.4 65 116-181 32-96 (230)
168 KOG0979 Structural maintenance 50.4 4.1E+02 0.009 29.9 23.7 81 77-165 252-332 (1072)
169 KOG3850 Predicted membrane pro 49.7 3E+02 0.0065 28.0 12.0 38 47-90 279-316 (455)
170 PF07851 TMPIT: TMPIT-like pro 48.9 1.1E+02 0.0023 29.8 8.4 82 6-100 3-88 (330)
171 PF07989 Microtub_assoc: Micro 48.9 12 0.00027 28.6 1.8 20 228-247 7-26 (75)
172 PF11461 RILP: Rab interacting 48.7 65 0.0014 24.3 5.6 38 175-216 2-39 (60)
173 PF11559 ADIP: Afadin- and alp 48.5 1.5E+02 0.0032 24.2 14.4 49 18-66 28-76 (151)
174 smart00787 Spc7 Spc7 kinetocho 47.9 2.5E+02 0.0054 26.6 20.9 141 44-206 146-290 (312)
175 PRK04863 mukB cell division pr 47.4 5E+02 0.011 29.9 26.2 14 20-33 256-269 (1486)
176 KOG2129 Uncharacterized conser 47.3 3.4E+02 0.0075 28.0 15.6 70 178-247 191-272 (552)
177 PF07795 DUF1635: Protein of u 47.2 58 0.0013 29.9 6.1 33 170-202 30-62 (214)
178 KOG0977 Nuclear envelope prote 47.0 3.5E+02 0.0077 28.1 20.4 77 134-211 145-221 (546)
179 TIGR03185 DNA_S_dndD DNA sulfu 46.7 3.3E+02 0.0071 27.6 26.1 39 160-198 378-416 (650)
180 PF14389 Lzipper-MIP1: Leucine 46.4 86 0.0019 24.4 6.2 69 82-151 10-82 (88)
181 COG1579 Zn-ribbon protein, pos 46.2 2.5E+02 0.0054 26.1 19.6 152 6-162 16-174 (239)
182 PRK11637 AmiB activator; Provi 46.2 2.7E+02 0.0059 26.6 24.8 38 119-156 201-238 (428)
183 KOG4637 Adaptor for phosphoino 46.0 3.4E+02 0.0074 27.6 14.4 103 11-117 150-260 (464)
184 PF15272 BBP1_C: Spindle pole 45.8 2.3E+02 0.0051 25.7 14.0 65 112-183 85-149 (196)
185 PF12761 End3: Actin cytoskele 45.7 1.9E+02 0.004 26.3 9.0 84 83-166 99-189 (195)
186 PF09304 Cortex-I_coil: Cortex 44.5 1.9E+02 0.0041 24.2 12.8 40 174-213 66-105 (107)
187 PF13097 CENP-U: CENP-A nucleo 44.4 78 0.0017 28.3 6.3 44 7-61 104-147 (175)
188 COG3883 Uncharacterized protei 43.9 1.7E+02 0.0037 27.6 8.8 61 105-165 41-101 (265)
189 KOG0976 Rho/Rac1-interacting s 43.9 5.1E+02 0.011 29.1 20.9 139 107-246 261-421 (1265)
190 PF11559 ADIP: Afadin- and alp 43.7 1.8E+02 0.0039 23.7 11.3 89 12-104 43-132 (151)
191 PF13851 GAS: Growth-arrest sp 43.5 2.3E+02 0.005 25.0 18.0 64 79-142 106-169 (201)
192 PF02185 HR1: Hr1 repeat; Int 43.1 93 0.002 22.6 5.6 61 29-96 2-63 (70)
193 KOG3564 GTPase-activating prot 42.3 90 0.002 32.5 7.1 72 113-185 39-110 (604)
194 PF15066 CAGE1: Cancer-associa 42.2 1.7E+02 0.0038 30.2 9.0 62 134-207 342-403 (527)
195 TIGR01005 eps_transp_fam exopo 41.9 4E+02 0.0086 27.2 17.8 150 5-164 235-403 (754)
196 PF02183 HALZ: Homeobox associ 41.9 56 0.0012 22.9 4.1 42 140-182 1-42 (45)
197 PF04012 PspA_IM30: PspA/IM30 41.8 2.3E+02 0.0049 24.4 18.8 113 45-167 26-142 (221)
198 PF14817 HAUS5: HAUS augmin-li 41.0 4.5E+02 0.0098 27.6 13.3 166 8-199 209-398 (632)
199 KOG2669 Regulator of nuclear m 40.9 3.1E+02 0.0067 26.7 10.1 90 17-108 165-254 (325)
200 PF02841 GBP_C: Guanylate-bind 40.9 2.8E+02 0.0062 25.3 25.0 63 101-163 151-216 (297)
201 PRK01156 chromosome segregatio 40.7 4.4E+02 0.0096 27.4 29.7 17 225-241 427-443 (895)
202 PF02994 Transposase_22: L1 tr 40.7 94 0.002 29.8 6.7 47 113-159 141-187 (370)
203 PF05816 TelA: Toxic anion res 40.7 3.1E+02 0.0068 25.7 12.5 47 73-119 83-130 (333)
204 COG2433 Uncharacterized conser 40.0 3.8E+02 0.0083 28.5 11.2 29 136-164 480-508 (652)
205 PF01486 K-box: K-box region; 40.0 1.1E+02 0.0023 23.7 5.8 90 135-245 10-99 (100)
206 PF12325 TMF_TATA_bd: TATA ele 39.4 2.2E+02 0.0049 23.6 11.8 89 27-121 29-119 (120)
207 PF05667 DUF812: Protein of un 39.1 4.6E+02 0.01 27.2 19.2 36 136-171 393-428 (594)
208 PF08647 BRE1: BRE1 E3 ubiquit 38.6 1.9E+02 0.0041 22.6 11.7 94 93-202 2-95 (96)
209 PF08580 KAR9: Yeast cortical 38.3 5E+02 0.011 27.4 14.7 112 18-139 196-338 (683)
210 KOG0996 Structural maintenance 38.3 6.8E+02 0.015 28.9 28.2 57 112-168 468-524 (1293)
211 PF13870 DUF4201: Domain of un 38.0 2.4E+02 0.0053 23.6 18.6 161 77-244 10-175 (177)
212 TIGR02680 conserved hypothetic 37.9 6.4E+02 0.014 28.4 22.9 50 117-166 334-383 (1353)
213 PF15294 Leu_zip: Leucine zipp 37.5 3.7E+02 0.0081 25.6 13.8 82 115-196 189-276 (278)
214 COG2900 SlyX Uncharacterized p 37.4 1.9E+02 0.004 22.8 6.7 47 119-165 4-50 (72)
215 TIGR00634 recN DNA repair prot 36.9 4.4E+02 0.0095 26.3 23.0 67 114-181 264-330 (563)
216 PF11594 Med28: Mediator compl 36.9 1.3E+02 0.0028 25.1 6.1 58 83-148 38-95 (106)
217 PF03148 Tektin: Tektin family 36.6 3.9E+02 0.0085 25.6 14.7 66 118-183 260-334 (384)
218 PF12709 Kinetocho_Slk19: Cent 36.3 1.7E+02 0.0037 23.6 6.5 45 110-160 28-72 (87)
219 PF15070 GOLGA2L5: Putative go 36.1 5.3E+02 0.011 26.9 20.9 66 65-133 2-67 (617)
220 PRK11415 hypothetical protein; 36.0 1.9E+02 0.0042 21.9 6.6 65 82-161 5-70 (74)
221 PF09731 Mitofilin: Mitochondr 35.8 4.4E+02 0.0096 26.0 20.4 75 106-181 368-442 (582)
222 PF10211 Ax_dynein_light: Axon 35.8 3E+02 0.0065 24.0 12.9 21 1-21 27-47 (189)
223 PF00769 ERM: Ezrin/radixin/mo 35.2 3.5E+02 0.0075 24.6 15.8 146 94-241 12-202 (246)
224 PF09325 Vps5: Vps5 C terminal 33.9 2.9E+02 0.0063 23.3 14.3 34 79-112 162-195 (236)
225 PF04576 Zein-binding: Zein-bi 33.5 2.7E+02 0.0058 22.8 11.1 88 103-196 4-93 (94)
226 PF13514 AAA_27: AAA domain 33.2 6.6E+02 0.014 27.3 27.2 244 2-246 647-914 (1111)
227 PF07989 Microtub_assoc: Micro 33.0 2.2E+02 0.0049 21.7 7.7 67 135-202 5-72 (75)
228 PRK13922 rod shape-determining 32.8 2E+02 0.0043 25.6 7.1 50 11-64 59-108 (276)
229 PF04156 IncA: IncA protein; 32.6 2.9E+02 0.0064 23.0 13.3 25 45-69 98-122 (191)
230 PF04642 DUF601: Protein of un 32.6 3.2E+02 0.0069 26.5 8.7 92 9-110 191-282 (311)
231 PF04048 Sec8_exocyst: Sec8 ex 32.5 2.4E+02 0.0052 23.3 7.1 27 44-70 92-118 (142)
232 PF10224 DUF2205: Predicted co 32.4 2.5E+02 0.0053 22.1 6.7 49 183-244 12-60 (80)
233 PF06428 Sec2p: GDP/GTP exchan 31.8 2.7E+02 0.0059 22.5 7.1 37 37-77 3-39 (100)
234 PF02346 Vac_Fusion: Chordopox 31.6 2.2E+02 0.0048 21.2 6.8 49 113-161 5-53 (57)
235 KOG0978 E3 ubiquitin ligase in 31.3 6.9E+02 0.015 26.9 23.8 105 113-218 521-625 (698)
236 PF04728 LPP: Lipoprotein leuc 31.1 2.3E+02 0.0049 21.2 7.7 25 174-198 25-49 (56)
237 PF08657 DASH_Spc34: DASH comp 31.0 2.1E+02 0.0046 26.5 7.2 60 5-64 155-216 (259)
238 COG2433 Uncharacterized conser 30.8 6.9E+02 0.015 26.7 11.8 49 114-169 420-468 (652)
239 PF10779 XhlA: Haemolysin XhlA 30.8 1.9E+02 0.0041 21.3 5.6 40 114-153 11-50 (71)
240 PF14643 DUF4455: Domain of un 30.7 5.3E+02 0.011 25.4 20.9 151 12-173 265-433 (473)
241 PF06156 DUF972: Protein of un 30.6 2.6E+02 0.0056 22.8 6.8 52 11-69 5-56 (107)
242 PF12001 DUF3496: Domain of un 30.1 2.8E+02 0.0061 23.1 7.1 58 8-70 11-68 (111)
243 PF12808 Mto2_bdg: Micro-tubul 29.9 84 0.0018 23.1 3.5 22 225-246 26-47 (52)
244 PF05769 DUF837: Protein of un 29.6 3.9E+02 0.0085 23.5 18.2 148 80-248 24-180 (181)
245 PF05700 BCAS2: Breast carcino 29.5 4E+02 0.0087 23.6 15.4 105 43-161 102-220 (221)
246 KOG0050 mRNA splicing protein 29.4 7.1E+02 0.015 26.4 13.3 97 44-149 483-579 (617)
247 TIGR02971 heterocyst_DevB ABC 29.4 4.2E+02 0.009 23.7 12.2 48 45-92 107-154 (327)
248 PF14712 Snapin_Pallidin: Snap 29.2 2.5E+02 0.0053 21.0 7.7 51 51-101 34-85 (92)
249 PF10154 DUF2362: Uncharacteri 28.9 2.2E+02 0.0048 29.2 7.5 82 92-181 105-186 (510)
250 PF01486 K-box: K-box region; 28.8 57 0.0012 25.2 2.7 34 216-249 7-40 (100)
251 PLN03229 acetyl-coenzyme A car 28.6 8E+02 0.017 26.8 19.2 48 73-120 479-526 (762)
252 KOG3564 GTPase-activating prot 28.4 2.4E+02 0.0052 29.5 7.6 57 6-62 27-104 (604)
253 PF04645 DUF603: Protein of un 28.1 3.1E+02 0.0068 24.9 7.4 54 28-81 119-180 (181)
254 PF14362 DUF4407: Domain of un 28.1 4.5E+02 0.0098 23.7 13.6 40 134-173 132-171 (301)
255 PF05276 SH3BP5: SH3 domain-bi 27.9 4.9E+02 0.011 24.1 10.5 41 89-130 123-163 (239)
256 COG1792 MreC Cell shape-determ 27.6 2.3E+02 0.0049 26.3 6.8 40 22-65 67-106 (284)
257 cd00089 HR1 Protein kinase C-r 27.4 2E+02 0.0044 21.0 5.2 61 28-94 9-70 (72)
258 COG0497 RecN ATPase involved i 27.3 7.3E+02 0.016 25.9 20.8 200 14-224 157-372 (557)
259 KOG1029 Endocytic adaptor prot 27.1 9.3E+02 0.02 27.0 20.4 143 67-215 447-602 (1118)
260 COG2900 SlyX Uncharacterized p 27.0 3.1E+02 0.0068 21.5 7.2 54 113-166 5-58 (72)
261 PF06785 UPF0242: Uncharacteri 26.8 3.6E+02 0.0078 27.1 8.2 64 138-202 93-156 (401)
262 PF05266 DUF724: Protein of un 26.8 4.5E+02 0.0097 23.3 11.5 12 137-148 159-170 (190)
263 COG3824 Predicted Zn-dependent 26.6 42 0.00092 29.0 1.7 40 1-40 9-49 (136)
264 PF05622 HOOK: HOOK protein; 26.3 22 0.00048 36.3 0.0 46 171-223 620-665 (713)
265 PF11180 DUF2968: Protein of u 26.2 5E+02 0.011 23.7 11.8 80 115-202 104-183 (192)
266 PF15450 DUF4631: Domain of un 26.2 7.7E+02 0.017 25.8 24.3 159 75-239 204-394 (531)
267 PF14662 CCDC155: Coiled-coil 25.7 5.2E+02 0.011 23.6 19.1 154 44-247 31-184 (193)
268 PF04859 DUF641: Plant protein 25.6 2.9E+02 0.0063 23.5 6.5 124 6-160 7-131 (131)
269 PF10805 DUF2730: Protein of u 25.6 3.5E+02 0.0075 21.6 7.1 49 113-166 46-94 (106)
270 PRK11032 hypothetical protein; 25.4 4.1E+02 0.0088 23.3 7.6 52 44-95 45-96 (160)
271 KOG0999 Microtubule-associated 25.4 8.8E+02 0.019 26.2 17.6 146 1-170 592-737 (772)
272 KOG0804 Cytoplasmic Zn-finger 25.4 7.8E+02 0.017 25.5 15.3 26 109-134 428-453 (493)
273 PF14988 DUF4515: Domain of un 25.2 4.9E+02 0.011 23.2 14.8 39 87-125 85-123 (206)
274 cd07651 F-BAR_PombeCdc15_like 25.2 4.6E+02 0.01 22.9 20.4 145 46-209 57-210 (236)
275 cd00089 HR1 Protein kinase C-r 24.9 2.8E+02 0.006 20.2 6.0 63 172-235 8-70 (72)
276 PF10498 IFT57: Intra-flagella 24.8 6.5E+02 0.014 24.4 14.9 172 35-244 175-351 (359)
277 TIGR03752 conj_TIGR03752 integ 24.6 7.8E+02 0.017 25.3 10.3 40 156-202 99-138 (472)
278 PF04420 CHD5: CHD5-like prote 24.4 4E+02 0.0086 22.6 7.2 44 74-123 41-84 (161)
279 PF10267 Tmemb_cc2: Predicted 24.2 7.2E+02 0.016 24.7 14.5 112 2-122 207-318 (395)
280 PF05103 DivIVA: DivIVA protei 24.0 86 0.0019 24.4 2.9 57 136-193 24-80 (131)
281 KOG1655 Protein involved in va 23.9 2.3E+02 0.0049 26.4 5.9 55 177-235 16-70 (218)
282 PF06717 DUF1202: Protein of u 23.9 2E+02 0.0043 28.0 5.8 44 119-162 134-177 (308)
283 PF13166 AAA_13: AAA domain 23.7 7.5E+02 0.016 24.8 22.3 71 100-170 324-403 (712)
284 smart00338 BRLZ basic region l 23.5 2.5E+02 0.0055 19.9 5.1 31 116-146 26-56 (65)
285 PF06005 DUF904: Protein of un 23.3 3.4E+02 0.0074 20.7 9.2 64 99-163 9-72 (72)
286 PF04325 DUF465: Protein of un 23.1 2.3E+02 0.0051 19.5 4.7 39 119-157 9-47 (49)
287 PF06810 Phage_GP20: Phage min 23.0 4.8E+02 0.01 22.2 8.3 71 101-179 9-82 (155)
288 PF09744 Jnk-SapK_ap_N: JNK_SA 22.8 5.1E+02 0.011 22.5 11.2 104 78-182 41-151 (158)
289 PF15272 BBP1_C: Spindle pole 22.7 5.9E+02 0.013 23.2 12.1 15 52-66 51-65 (196)
290 PF10473 CENP-F_leu_zip: Leuci 22.7 4.9E+02 0.011 22.3 13.6 40 24-63 48-87 (140)
291 PF08581 Tup_N: Tup N-terminal 22.6 3.8E+02 0.0081 20.9 10.2 64 16-79 6-76 (79)
292 PF13870 DUF4201: Domain of un 22.4 4.7E+02 0.01 21.9 15.5 48 119-166 16-64 (177)
293 PF04065 Not3: Not1 N-terminal 22.4 6.2E+02 0.013 23.3 18.2 65 117-183 137-207 (233)
294 KOG3990 Uncharacterized conser 22.3 4E+02 0.0086 25.8 7.4 25 109-133 267-291 (305)
295 KOG0995 Centromere-associated 22.2 9.5E+02 0.021 25.4 20.8 107 43-165 253-360 (581)
296 TIGR02449 conserved hypothetic 21.8 3.7E+02 0.008 20.5 7.3 48 120-167 4-51 (65)
297 COG5570 Uncharacterized small 21.7 2.8E+02 0.0061 21.0 5.0 53 106-158 2-54 (57)
298 PF04728 LPP: Lipoprotein leuc 21.6 3.5E+02 0.0077 20.2 7.4 46 116-161 3-48 (56)
299 PF10792 DUF2605: Protein of u 21.5 1.6E+02 0.0035 24.3 4.1 13 9-21 12-24 (98)
300 PF01166 TSC22: TSC-22/dip/bun 21.5 1E+02 0.0022 23.5 2.7 23 222-244 15-44 (59)
301 PF09755 DUF2046: Uncharacteri 21.4 7.6E+02 0.017 24.0 23.3 170 45-246 23-203 (310)
302 PF11704 Folliculin: Vesicle c 21.4 78 0.0017 27.3 2.4 36 2-37 71-106 (167)
303 PF02994 Transposase_22: L1 tr 21.4 2.4E+02 0.0052 27.0 5.9 45 116-160 151-195 (370)
304 KOG4010 Coiled-coil protein TP 21.3 2.3E+02 0.005 26.2 5.4 41 184-230 41-81 (208)
305 TIGR01010 BexC_CtrB_KpsE polys 21.3 6.6E+02 0.014 23.2 16.3 24 137-160 242-265 (362)
306 KOG0963 Transcription factor/C 20.9 1E+03 0.022 25.4 26.6 83 100-183 212-309 (629)
307 PF07716 bZIP_2: Basic region 20.9 95 0.0021 21.7 2.4 27 221-247 25-51 (54)
308 PRK10698 phage shock protein P 20.7 6.1E+02 0.013 22.6 14.6 34 128-161 90-123 (222)
309 PF02183 HALZ: Homeobox associ 20.7 2.1E+02 0.0045 20.1 4.0 27 9-35 7-33 (45)
310 PF07352 Phage_Mu_Gam: Bacteri 20.7 3.5E+02 0.0075 22.4 6.0 46 88-133 11-56 (149)
311 KOG2391 Vacuolar sorting prote 20.6 5.8E+02 0.013 25.5 8.3 61 177-246 218-278 (365)
312 PF09728 Taxilin: Myosin-like 20.6 7.2E+02 0.016 23.4 27.1 133 8-161 16-152 (309)
313 TIGR02977 phageshock_pspA phag 20.4 5.9E+02 0.013 22.3 14.8 39 126-164 88-126 (219)
314 PF15294 Leu_zip: Leucine zipp 20.3 7.6E+02 0.017 23.6 11.5 67 182-248 67-152 (278)
315 TIGR01000 bacteriocin_acc bact 20.3 7.8E+02 0.017 23.7 20.2 24 133-156 239-262 (457)
No 1
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.20 E-value=0.0018 Score=57.47 Aligned_cols=193 Identities=21% Similarity=0.331 Sum_probs=116.1
Q ss_pred HHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHHhhhhhhhhhHHHHHHHH
Q 025508 28 SEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVI 107 (251)
Q Consensus 28 ~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~r~n~e~lskE~Eh~rai 107 (251)
.+|..||..+..++-.|-.|+..+.+|+.+.+.+++.|.+-+..+-.++...+-. ++.. .-..+...++
T Consensus 103 ~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~-----e~~~------~~~~dL~~~L 171 (312)
T PF00038_consen 103 EELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTV-----EVDQ------FRSSDLSAAL 171 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT---------------------------HHHHH
T ss_pred HHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccce-----eecc------cccccchhhh
Confidence 3455555555555555555555555555555555555555555444444211110 0000 0011223334
Q ss_pred HHHhHHHHHhH--------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhH
Q 025508 108 DSIKQDYAAKA--------RDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLK 179 (251)
Q Consensus 108 e~Lk~~~~~~i--------~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLk 179 (251)
..++..|+..+ +....+|..+-.+...+...+..++.++...+..|+.|...|+.+.... ..+...|.+|.
T Consensus 172 ~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~-~~Le~~l~~le 250 (312)
T PF00038_consen 172 REIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKN-ASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccch-hhhhhhHHHHH
Confidence 44444443322 2344566666666777888899999999999999999999999887763 56788888888
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhhhhHHHHHHHHHhhhhhhHHHH
Q 025508 180 DCLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIMKLRKENEILK 241 (251)
Q Consensus 180 D~L~~EqEeKn~l~~kLq~~ekElli~ktK~~eqqrD~tS~~hVetLKqKiMKLRKENE~LK 241 (251)
..+..+ ..+.+..+..++.++.=.|..+..|.++. ..|=.--|.|=.|...-+
T Consensus 251 ~~~~~~---~~~~~~~i~~le~el~~l~~~~~~~~~ey------~~Ll~~K~~Ld~EIatYR 303 (312)
T PF00038_consen 251 QRLDEE---REEYQAEIAELEEELAELREEMARQLREY------QELLDVKLALDAEIATYR 303 (312)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHhhhccchhHHHHHHHHHHHHHHH------HHHHHHHHhHHHHHHHHH
Confidence 888754 45567778888999888888888888774 223333455555555443
No 2
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.01 E-value=0.0071 Score=64.48 Aligned_cols=162 Identities=17% Similarity=0.166 Sum_probs=117.2
Q ss_pred CCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHH---HHhHHHHHHHHHHHhhh
Q 025508 2 AATSDDGMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERA---RNSYTESLENLADQLER 78 (251)
Q Consensus 2 aatsDEemesLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRL---rklytEsL~~~a~qle~ 78 (251)
.+.||+++++++.+|+..+..|...+.+++.-......+. +.+......+-.+..+| ...|.+-+......+.-
T Consensus 296 l~~s~eEL~~ll~~f~~~~~e~~~~~~~le~e~~~l~~el---~~l~~~~~~l~~e~gkl~~~~~~~~~~~~~~~~~~~~ 372 (1311)
T TIGR00606 296 FQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKER---RLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQS 372 (1311)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999999887766655544444443 44444444444443333 34455555444444433
Q ss_pred hHhhhHHH---------HHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 025508 79 KAKCQSLK---------EELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAH 149 (251)
Q Consensus 79 rtk~qsLk---------EEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaah 149 (251)
-+...++. ..+..+.+.+..+-..+.++++.++..+...+..++.+|..+...++..+..+.....++...
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~q~~L~ei~~~l~~~eq~~~~~~e~~~~~ 452 (1311)
T TIGR00606 373 LATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKK 452 (1311)
T ss_pred HHHhcCcCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322222 347777888888889999999999999999999999999999999999999999888888888
Q ss_pred hHHHHHHHhhhhhHHHh
Q 025508 150 KMHMQTLAKKLDQVKFD 166 (251)
Q Consensus 150 k~hid~L~~~LeqV~~e 166 (251)
..-+..+..+|+.+...
T Consensus 453 ~~~i~~~~~~l~~~~~~ 469 (1311)
T TIGR00606 453 QEELKFVIKELQQLEGS 469 (1311)
T ss_pred HHHHHHHHHHHhhcccC
Confidence 88888888888865544
No 3
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.82 E-value=0.009 Score=53.05 Aligned_cols=194 Identities=23% Similarity=0.344 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHHhhhhhhh
Q 025508 18 QIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHL 97 (251)
Q Consensus 18 ~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~r~n~e~l 97 (251)
++.-+..+.-.++..+|..|..+...|..++..+..|+++.+.. .+..++..+++++|++||.
T Consensus 72 ~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~----------~~~r~~le~~i~~L~eEl~------- 134 (312)
T PF00038_consen 72 RLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEE----------TLARVDLENQIQSLKEELE------- 134 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH-------
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh----------hhhHhHHHHHHHHHHHHHH-------
Confidence 33445555555566666666666555555555555555433321 2233445555666665554
Q ss_pred hhHHHHHHHHHHHhHHHHHhHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhh
Q 025508 98 SKEYELRKVIDSIKQDYAAKARDFEDQIR-SLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQ 176 (251)
Q Consensus 98 skE~Eh~raie~Lk~~~~~~i~~LE~qi~-~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIq 176 (251)
-++.-|+..+.+|..++. ...++- +...-..|..-|...++|.+..++ .-..+++..|+..|.
T Consensus 135 -----------fl~~~heeEi~~L~~~~~~~~~~e~--~~~~~~dL~~~L~eiR~~ye~~~~---~~~~e~e~~y~~k~~ 198 (312)
T PF00038_consen 135 -----------FLKQNHEEEIEELREQIQSSVTVEV--DQFRSSDLSAALREIRAQYEEIAQ---KNREELEEWYQSKLE 198 (312)
T ss_dssp -----------HHHHHHHHHHHTTSTT------------------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred -----------HHHhhhhhhhhhhhhccccccceee--cccccccchhhhhhHHHHHHHHHh---hhhhhhhhhcccccc
Confidence 355556666666666664 222211 111122244555555566655443 344578888888888
Q ss_pred hhHHHHHH-------HHHHhHHHHHHHHHHHHHHHHhh---hhHHHhhhhhhhh--hhHHHHHHHHHhhhhhhHHHHhhh
Q 025508 177 DLKDCLLL-------EQEEKNELNKRVQDLEKELLMNR---TKMAEHNRDLTSV--RSVETLKLKIMKLRKENEILKRKL 244 (251)
Q Consensus 177 dLkD~L~~-------EqEeKn~l~~kLq~~ekElli~k---tK~~eqqrD~tS~--~hVetLKqKiMKLRKENE~LKR~l 244 (251)
+++..... -.+|-..+..+++.++.++--.+ ..+..+.+|+-.. ..+..+...|..|..+...++-.+
T Consensus 199 ~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~ 278 (312)
T PF00038_consen 199 ELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEM 278 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 87754433 34455556666666665543332 3344444444322 222334445555555544444433
No 4
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.44 E-value=0.23 Score=52.80 Aligned_cols=205 Identities=21% Similarity=0.313 Sum_probs=113.2
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHH-------HHHhhhhHHhHHHHHHhHHHHHHHHHHHhhh
Q 025508 6 DDGMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREAL-------EITCNTLKKENERARNSYTESLENLADQLER 78 (251)
Q Consensus 6 DEemesLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReAL-------E~tc~~Lk~dneRLrklytEsL~~~a~qle~ 78 (251)
++++..+-..++.+.+.+.....+|+.++.....=...-..+ ....+++..+..+++.-..+..++....-+.
T Consensus 245 ~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~ 324 (1163)
T COG1196 245 EEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEER 324 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666677777777777777777776655443333333 3345666666666666555555553221111
Q ss_pred ----hHhhh----------HHHHHHHhhhhhhhhhHHHHHH-------HHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHH
Q 025508 79 ----KAKCQ----------SLKEELKRVNDEHLSKEYELRK-------VIDSIKQDYAAKARDFEDQIRSLMLEKATNEA 137 (251)
Q Consensus 79 ----rtk~q----------sLkEEL~r~n~e~lskE~Eh~r-------aie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea 137 (251)
..+.. .+.+++......+...-.++.. +++.....+......++.++..+..+...-..
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 404 (1163)
T COG1196 325 LEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKR 404 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 1233333333333333333333 34444455555556666666666666666666
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHH
Q 025508 138 TISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMA 211 (251)
Q Consensus 138 ~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekElli~ktK~~ 211 (251)
.|..|...+.-....+..+..++..+..++.. -+.++.+++..+--=++..+++...+..++.++---++++.
T Consensus 405 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (1163)
T COG1196 405 EIESLEERLERLSERLEDLKEELKELEAELEE-LQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQ 477 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666655 44556666666555555566666666666666544444433
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.33 E-value=0.23 Score=50.28 Aligned_cols=47 Identities=13% Similarity=0.172 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHH
Q 025508 118 ARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVK 164 (251)
Q Consensus 118 i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~ 164 (251)
+..|+.++..+..+...-+..+..+..++......++.|..+++...
T Consensus 800 l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~~~l~~~~~~l~ 846 (1164)
T TIGR02169 800 LSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLK 846 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555544444444454444444444444444444444333
No 6
>PRK02224 chromosome segregation protein; Provisional
Probab=97.28 E-value=0.26 Score=49.79 Aligned_cols=190 Identities=14% Similarity=0.185 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHH---HHHHHHhhh----hHhhhHHHHHH
Q 025508 17 DQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESL---ENLADQLER----KAKCQSLKEEL 89 (251)
Q Consensus 17 d~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL---~~~a~qle~----rtk~qsLkEEL 89 (251)
...+.+++....+++.+.........+...++.....+......+...+.+.- .++...++. +.+......++
T Consensus 240 ~~~~~el~~~~~~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l 319 (880)
T PRK02224 240 DEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREEL 319 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 34445555555555555555555444444554444444444444444333322 122222211 11222223334
Q ss_pred HhhhhhhhhhHHHHHHHHHHHh---HHHHHhHHHHHHHHHHHH-------HHhhhhHHHHHHHHHHHHHhhHHHHHHHhh
Q 025508 90 KRVNDEHLSKEYELRKVIDSIK---QDYAAKARDFEDQIRSLM-------LEKATNEATISNLHQDLAAHKMHMQTLAKK 159 (251)
Q Consensus 90 ~r~n~e~lskE~Eh~raie~Lk---~~~~~~i~~LE~qi~~~~-------~q~at~Ea~I~qL~~dLaahk~hid~L~~~ 159 (251)
..-..++..+..+++..+..+. ..+...+..|+..+..+. .+....+..|..++.++.+...-++.+...
T Consensus 320 ~~k~~el~~~l~~~~~~l~~~~~~~e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~ 399 (880)
T PRK02224 320 EDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRER 399 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444443333332 233333444444443333 333334444444444444444444433333
Q ss_pred hhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 025508 160 LDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNR 207 (251)
Q Consensus 160 LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekElli~k 207 (251)
++.+..+ --.|...|+++.+-+..-.+..+.+...+...++.+-..+
T Consensus 400 l~~~~~~-~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 446 (880)
T PRK02224 400 FGDAPVD-LGNAEDFLEELREERDELREREAELEATLRTARERVEEAE 446 (880)
T ss_pred Hhcchhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322211 0245556666666666666666666666666665554444
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.22 E-value=0.29 Score=49.22 Aligned_cols=32 Identities=22% Similarity=0.213 Sum_probs=15.7
Q ss_pred hhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHH
Q 025508 171 YNLEIQDLKDCLLLEQEEKNELNKRVQDLEKE 202 (251)
Q Consensus 171 Y~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekE 202 (251)
+..+|.+|.+-+..-+++...+...+..++.+
T Consensus 864 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 895 (1179)
T TIGR02168 864 LEELIEELESELEALLNERASLEEALALLRSE 895 (1179)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555554444445444444444444
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.05 E-value=0.43 Score=48.02 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=12.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhh
Q 025508 9 MESLLSDFDQIYEDFKRAISEVQLLRSSCN 38 (251)
Q Consensus 9 mesLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~ 38 (251)
++.+-..++.+...+...-.++..++....
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 270 (1179)
T TIGR02168 241 LEELQEELKEAEEELEELTAELQELEEKLE 270 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433
No 9
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.78 E-value=1 Score=48.15 Aligned_cols=56 Identities=13% Similarity=0.208 Sum_probs=37.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHH
Q 025508 11 SLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYT 66 (251)
Q Consensus 11 sLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklyt 66 (251)
.|-.-...+-..+..+..++..+......=...++.+..+...++.+.+.++.-.+
T Consensus 671 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1163)
T COG1196 671 ELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELA 726 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555667777777777666666666677777777777777777766665
No 10
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.57 E-value=1.4 Score=47.28 Aligned_cols=167 Identities=18% Similarity=0.248 Sum_probs=114.2
Q ss_pred hHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHhhHHHHHHH
Q 025508 79 KAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQD-LAAHKMHMQTLA 157 (251)
Q Consensus 79 rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~d-Laahk~hid~L~ 157 (251)
++.+......+.+++++..+.+.++..+++.-+......++.++.++..+..++....+.+..-..+ ...++++.+.+.
T Consensus 648 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~ 727 (1201)
T PF12128_consen 648 EQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELE 727 (1201)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888899999999999999999999999999999999999999999998877766655322222 223344444333
Q ss_pred hhh-------hhHHHhhhhhhhhhhhhhHHHHHHHHH-------HhHHHHHHHHHHHHHHHH---hhhhHHHhhhhhhhh
Q 025508 158 KKL-------DQVKFDVEMKYNLEIQDLKDCLLLEQE-------EKNELNKRVQDLEKELLM---NRTKMAEHNRDLTSV 220 (251)
Q Consensus 158 ~~L-------eqV~~eve~kY~~EIqdLkD~L~~EqE-------eKn~l~~kLq~~ekElli---~ktK~~eqqrD~tS~ 220 (251)
.-+ .+-.......|..++.+|+.-..-|-. .=.++..++..+++++-- .|.+..++.+++-+.
T Consensus 728 ~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~ 807 (1201)
T PF12128_consen 728 AELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEE 807 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 322 223334445555666665555544433 335667777777777643 567888999999999
Q ss_pred hh--------HHHHHHHHHhhhhhhHHHHhhhh
Q 025508 221 RS--------VETLKLKIMKLRKENEILKRKLN 245 (251)
Q Consensus 221 ~h--------VetLKqKiMKLRKENE~LKR~l~ 245 (251)
|- .-.|+..+..++.+-..+..++.
T Consensus 808 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 840 (1201)
T PF12128_consen 808 WDKVDELREEKPELEEQLRDLEQELQELEQELN 840 (1201)
T ss_pred HHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 83 55666666666666666555553
No 11
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.33 E-value=2.9 Score=48.04 Aligned_cols=194 Identities=20% Similarity=0.247 Sum_probs=135.0
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHH
Q 025508 7 DGMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLK 86 (251)
Q Consensus 7 EemesLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLk 86 (251)
++.+++++ ++..+-..--++|+.++...-.|++.+.+|...+..+..|...|++.|.|-....++.+...++..+--
T Consensus 1283 ee~e~~~~---~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~ 1359 (1930)
T KOG0161|consen 1283 EEAEAKLS---ALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAEL 1359 (1930)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433 445566666789999999999999999999999999999999999999999999999888888766543
Q ss_pred H-HHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHH---Hhhhhh
Q 025508 87 E-ELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTL---AKKLDQ 162 (251)
Q Consensus 87 E-EL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L---~~~Leq 162 (251)
. -..+.++...+ .-..++-.|......+.+++.++..+-.--++-|-+..+|.+++...-.-.+.. ...|+.
T Consensus 1360 ~~~~~k~e~~~~~----~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~ 1435 (1930)
T KOG0161|consen 1360 AQWKKKFEEEVLQ----RLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEK 1435 (1930)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3 33344444433 224567778888888999999999999999999999999999887765544433 333333
Q ss_pred HHHhh---hhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 025508 163 VKFDV---EMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNR 207 (251)
Q Consensus 163 V~~ev---e~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekElli~k 207 (251)
-.... =..++.-..+|-..+.-++.+-..+...++.+...+-...
T Consensus 1436 k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~ 1483 (1930)
T KOG0161|consen 1436 KQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELL 1483 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 22221 1234444444444455566666666666666665554433
No 12
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.71 E-value=2 Score=40.98 Aligned_cols=214 Identities=24% Similarity=0.334 Sum_probs=118.5
Q ss_pred CCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHh
Q 025508 2 AATSDDGMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAK 81 (251)
Q Consensus 2 aatsDEemesLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk 81 (251)
.++|+-.++-|......+-++++.=-.|+-++|. .|+.|..+|..||...--. ..-|.|-+
T Consensus 15 ~~~S~~t~~~l~~~~~sL~qen~~Lk~El~~ek~--------------~~~~L~~e~~~lr~~sv~~-~~~aEqEE---- 75 (310)
T PF09755_consen 15 TSSSSATREQLRKRIESLQQENRVLKRELETEKA--------------RCKHLQEENRALREASVRI-QAKAEQEE---- 75 (310)
T ss_pred CCCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH-HHHHHHHH----
Confidence 3445555555555555555555444444444443 4566777777776654322 22222221
Q ss_pred hhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHh----HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-hhHHHHHH
Q 025508 82 CQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAK----ARDFEDQIRSLMLEKATNEATISNLHQDLAA-HKMHMQTL 156 (251)
Q Consensus 82 ~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~----i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaa-hk~hid~L 156 (251)
+-+.+.++-+=+..++.-+.|-..|+.. .+.|..+|..+..+++ .|..-|.+ +..+|..|
T Consensus 76 --------E~isN~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~-------~lE~~Le~EqE~~V~kL 140 (310)
T PF09755_consen 76 --------EFISNTLLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKV-------ELENQLEQEQEYLVNKL 140 (310)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHH
Confidence 1122222222233333344444444433 3556666666665554 34444444 55667777
Q ss_pred HhhhhhHHHhhhh------hhhhhhhhhHHHHHHHHHH-hHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhhh--------
Q 025508 157 AKKLDQVKFDVEM------KYNLEIQDLKDCLLLEQEE-KNELNKRVQDLEKELLMNRTKMAEHNRDLTSVR-------- 221 (251)
Q Consensus 157 ~~~LeqV~~eve~------kY~~EIqdLkD~L~~EqEe-Kn~l~~kLq~~ekElli~ktK~~eqqrD~tS~~-------- 221 (251)
..+++.+.++... +...|.=||--.|--|||. -|.|.+++-.+..|=.....++..---+..|++
T Consensus 141 ~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~ 220 (310)
T PF09755_consen 141 QKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEE 220 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhccc
Confidence 7777777665521 3344555666667677765 477777888888777777777664222333333
Q ss_pred --hHHHHHHHHHhhhhhhHHHHhhhhhccc
Q 025508 222 --SVETLKLKIMKLRKENEILKRKLNSSSQ 249 (251)
Q Consensus 222 --hVetLKqKiMKLRKENE~LKR~l~~s~~ 249 (251)
+++.+=.-|..||.|-.-|++.|..++.
T Consensus 221 ~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~ 250 (310)
T PF09755_consen 221 NDTAERLSSHIRSLRQEVSRLRQQLAASQQ 250 (310)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667778888888888888877654
No 13
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.50 E-value=4 Score=42.98 Aligned_cols=124 Identities=27% Similarity=0.411 Sum_probs=81.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhh-------------HHH------hhhhhhhhhhhhhHHHHHHHH
Q 025508 126 RSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQ-------------VKF------DVEMKYNLEIQDLKDCLLLEQ 186 (251)
Q Consensus 126 ~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~Leq-------------V~~------eve~kY~~EIqdLkD~L~~Eq 186 (251)
+++....--+++-|.+|+-.+...+.-+.-|...|+. +.. +.-.+++.||.-|.+.|----
T Consensus 503 s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E 582 (775)
T PF10174_consen 503 SKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAE 582 (775)
T ss_pred HHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333445556667766666655555555544433 222 234567899999999998888
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhh----------------------------------------------
Q 025508 187 EEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSV---------------------------------------------- 220 (251)
Q Consensus 187 EeKn~l~~kLq~~ekElli~ktK~~eqqrD~tS~---------------------------------------------- 220 (251)
.|||+...++..++++|--.-++...++.....+
T Consensus 583 ~EK~~ke~ki~~LekeLek~~~~~~~~~~~~~~~k~~~~~~~~~elleea~Ree~~~t~e~~l~~s~q~~~~~~~~~~~~ 662 (775)
T PF10174_consen 583 NEKNDKEKKIGELEKELEKAQMHLAKQQETVEATKIEENKRKRAELLEEALREEVSITEERELAQSQQKLAQQEAQSSHL 662 (775)
T ss_pred HHHHhHHHHHHHHHHHHHHhccchhhhhhhhhhhhhHHHHHhhhHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhhH
Confidence 9999999999999998644333333332222211
Q ss_pred -hhHHHHHHHHHhhhhhhHHHHhhhhhccc
Q 025508 221 -RSVETLKLKIMKLRKENEILKRKLNSSSQ 249 (251)
Q Consensus 221 -~hVetLKqKiMKLRKENE~LKR~l~~s~~ 249 (251)
.||+.|-.-+-++|.|.+.|+.++++++.
T Consensus 663 e~qleeL~~~l~k~~~Eld~l~~qL~ssq~ 692 (775)
T PF10174_consen 663 EKQLEELEAALEKLRQELDQLKAQLESSQQ 692 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777778899999999999988764
No 14
>PRK02224 chromosome segregation protein; Provisional
Probab=95.42 E-value=3.5 Score=41.86 Aligned_cols=9 Identities=22% Similarity=0.667 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 025508 21 EDFKRAISE 29 (251)
Q Consensus 21 e~fk~g~~E 29 (251)
++|...+.+
T Consensus 165 e~~~~~~~~ 173 (880)
T PRK02224 165 EEYRERASD 173 (880)
T ss_pred HHHHHHHHH
Confidence 444444443
No 15
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.35 E-value=5.1 Score=43.26 Aligned_cols=118 Identities=20% Similarity=0.313 Sum_probs=77.2
Q ss_pred HHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHH
Q 025508 45 EALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQ 124 (251)
Q Consensus 45 eALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~q 124 (251)
+.++...+.+..+...+..-..+.+..+..+.. .--..++....-+..+....-......++..+..+...+.+|+.+
T Consensus 681 ~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~--e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~ 758 (1201)
T PF12128_consen 681 EQIEEQLNELEEELKQLKQELEELLEELKEQLK--ELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQ 758 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443322211 111122233333444555566677788888889999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHH
Q 025508 125 IRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVK 164 (251)
Q Consensus 125 i~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~ 164 (251)
...-|..+-++..+|.+|+..++.....|+-...+=..|.
T Consensus 759 ~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~ 798 (1201)
T PF12128_consen 759 YNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVI 798 (1201)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999999888887776655553
No 16
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.08 E-value=3.3 Score=39.53 Aligned_cols=51 Identities=18% Similarity=0.317 Sum_probs=22.3
Q ss_pred HHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhh-hhHhhhHHHHHHHhhhhhh
Q 025508 46 ALEITCNTLKKENERARNSYTESLENLADQLE-RKAKCQSLKEELKRVNDEH 96 (251)
Q Consensus 46 ALE~tc~~Lk~dneRLrklytEsL~~~a~qle-~rtk~qsLkEEL~r~n~e~ 96 (251)
.++..+..++...+++++.+...+..+-.+++ ...++.+++.++.++.+++
T Consensus 192 ~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i 243 (562)
T PHA02562 192 HIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDEL 243 (562)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555565555443333332222 1223334444444444443
No 17
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=94.90 E-value=9.7 Score=44.03 Aligned_cols=200 Identities=18% Similarity=0.266 Sum_probs=134.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHHh
Q 025508 12 LLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKR 91 (251)
Q Consensus 12 LL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~r 91 (251)
+...++.....-++.=-||+.++...+..++-+-.+|.-|..|..+..-... -..+|++...+|+ +-...|..-|++
T Consensus 955 ~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~ee-k~~~l~k~~~kle--~~l~~le~~le~ 1031 (1930)
T KOG0161|consen 955 LELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEE-KAKSLNKAKAKLE--QQLDDLEVTLER 1031 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 4445555555566666666677777777777776677777666655433322 1223333333332 122344444444
Q ss_pred hhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhh
Q 025508 92 VNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKY 171 (251)
Q Consensus 92 ~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY 171 (251)
-+...-.+|..-++-.-.| ..+...+.++..++..+..+++..+..+.++...+....+.+-.+-....+..
T Consensus 1032 e~~~r~e~Ek~~rkle~el-~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~------- 1103 (1930)
T KOG0161|consen 1032 EKRIRMELEKAKRKLEGEL-KDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELE------- 1103 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-------
Confidence 4444444444344444444 66777788899999999999999999999999999988888777766665544
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhhhhH
Q 025508 172 NLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSV 223 (251)
Q Consensus 172 ~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekElli~ktK~~eqqrD~tS~~hV 223 (251)
..|.+|.+-|-.|-...+.+.++..++..++-=.+..+.++-..+.+...+
T Consensus 1104 -~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~ 1154 (1930)
T KOG0161|consen 1104 -ARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLEL 1154 (1930)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 358899999999999999999999999999888888888885555555443
No 18
>PRK03918 chromosome segregation protein; Provisional
Probab=94.58 E-value=5.9 Score=40.05 Aligned_cols=82 Identities=23% Similarity=0.386 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHH------------------HhhhhhhhhhhhhhHHH
Q 025508 120 DFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVK------------------FDVEMKYNLEIQDLKDC 181 (251)
Q Consensus 120 ~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~------------------~eve~kY~~EIqdLkD~ 181 (251)
.|.+++..+..+...-...|..|+..++..+..|+.|...++... .++-.+|..+|..|.+-
T Consensus 388 ~l~~~l~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~~~~~~Cp~c~~~L~~~~~~el~~~~~~ei~~l~~~ 467 (880)
T PRK03918 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKE 467 (880)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCCchhHHHHHHHHHHHHHHHHHH
Confidence 444555554444444445566666666666666666666655433 23335788888888887
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q 025508 182 LLLEQEEKNELNKRVQDLEK 201 (251)
Q Consensus 182 L~~EqEeKn~l~~kLq~~ek 201 (251)
+..=.++...+.+.+..+..
T Consensus 468 ~~~l~~~~~~l~~~~~~~~~ 487 (880)
T PRK03918 468 LKEIEEKERKLRKELRELEK 487 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77666666666666665543
No 19
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.56 E-value=8.5 Score=41.84 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhh
Q 025508 118 ARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKY 171 (251)
Q Consensus 118 i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY 171 (251)
...|+.+|..+..+...-.+.|..+..++......++.+...++++...-+.++
T Consensus 883 r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 936 (1311)
T TIGR00606 883 RQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSN 936 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555555554444443
No 20
>PRK03918 chromosome segregation protein; Provisional
Probab=93.92 E-value=8 Score=39.10 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=10.8
Q ss_pred HHHHHHHHhhhhhhHHHHhhh
Q 025508 224 ETLKLKIMKLRKENEILKRKL 244 (251)
Q Consensus 224 etLKqKiMKLRKENE~LKR~l 244 (251)
+-+.+.+-.|+++...++.++
T Consensus 455 ~~~~~ei~~l~~~~~~l~~~~ 475 (880)
T PRK03918 455 EEYTAELKRIEKELKEIEEKE 475 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444
No 21
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=93.88 E-value=1.2 Score=44.62 Aligned_cols=127 Identities=20% Similarity=0.319 Sum_probs=95.3
Q ss_pred HhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhh
Q 025508 80 AKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKK 159 (251)
Q Consensus 80 tk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~ 159 (251)
.|.+|+...+..+..+.++-=+-..|+++-|-+.|-.||- |+ -.+.-+.-..+-+.-|-.++=...-+|-|-|++|
T Consensus 403 eKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCL--En--ahLaqalEaerqaLRqCQrEnQELnaHNQELnnR 478 (593)
T KOG4807|consen 403 EKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCL--EN--AHLAQALEAERQALRQCQRENQELNAHNQELNNR 478 (593)
T ss_pred HhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhH
Confidence 4667777777777777777777778888888888888763 32 3344444455566666666666666777888887
Q ss_pred hhh---------------------------------HHHhhhhhh-hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 025508 160 LDQ---------------------------------VKFDVEMKY-NLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLM 205 (251)
Q Consensus 160 Leq---------------------------------V~~eve~kY-~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekElli 205 (251)
|-. .+.+-+.+| +.||+-|||.|++.+-.|.=.+.|-++.=-||-|
T Consensus 479 LaaEItrLRtlltgdGgGtGsplaqgkdayELEVLLRVKEsEiQYLKqEissLkDELQtalrDKkyaSdKYkDiYtELSi 558 (593)
T KOG4807|consen 479 LAAEITRLRTLLTGDGGGTGSPLAQGKDAYELEVLLRVKESEIQYLKQEISSLKDELQTALRDKKYASDKYKDIYTELSI 558 (593)
T ss_pred HHHHHHHHHHHhccCCCCCCCccccCcchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHH
Confidence 642 234456666 6899999999999999999999999999999999
Q ss_pred hhhhH
Q 025508 206 NRTKM 210 (251)
Q Consensus 206 ~ktK~ 210 (251)
-|+|-
T Consensus 559 aKaka 563 (593)
T KOG4807|consen 559 AKAKA 563 (593)
T ss_pred HHHhh
Confidence 99874
No 22
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=93.61 E-value=0.02 Score=59.44 Aligned_cols=237 Identities=19% Similarity=0.282 Sum_probs=0.0
Q ss_pred hhhHHHHHhhHH-------HHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhh
Q 025508 6 DDGMESLLSDFD-------QIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLER 78 (251)
Q Consensus 6 DEemesLL~~Fd-------~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~ 78 (251)
++++..+..-++ ++-...|.--..|+.|.-.+.+|-.-|.=.|-.-.+|..+.+-|+.-+.|+....+.|.+.
T Consensus 17 e~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~aq~E~ 96 (859)
T PF01576_consen 17 EEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQAQIEL 96 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHhhHHH
Confidence 445555555444 2334556666778889999999999999999999999999999999999999999999999
Q ss_pred hHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHh
Q 025508 79 KAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAK 158 (251)
Q Consensus 79 rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~ 158 (251)
+.|-. .||.++...+-.---.|..++..|+.+|..-+.+|..+|..+...++.-|-.-..|..++....+.++.+..
T Consensus 97 ~kkrE---~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k 173 (859)
T PF01576_consen 97 NKKRE---AELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQK 173 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 88866 366666666555556788999999999999999999999999999999888888888888888877777654
Q ss_pred hhhhHH----------Hhhhhhh---hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHH---HhhhhHHHhhhhhhhhhh
Q 025508 159 KLDQVK----------FDVEMKY---NLEIQDLKDCLLLEQEEKNELNKRVQDLEKELL---MNRTKMAEHNRDLTSVRS 222 (251)
Q Consensus 159 ~LeqV~----------~eve~kY---~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekEll---i~ktK~~eqqrD~tS~~h 222 (251)
.--... .++..++ ...+.||..-..==+.+..+|++.|...+..+. -.+..+..|..|+.....
T Consensus 174 ~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~le 253 (859)
T PF01576_consen 174 AKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLE 253 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 322211 1111111 112222222222223344456666655554322 123455666666666555
Q ss_pred HHH-----HHHHHHhhhhhhHHHHhhhh
Q 025508 223 VET-----LKLKIMKLRKENEILKRKLN 245 (251)
Q Consensus 223 Vet-----LKqKiMKLRKENE~LKR~l~ 245 (251)
-+| |-.++..+..+++.|+-.+.
T Consensus 254 eEtr~k~~L~~~l~~le~e~~~L~eqle 281 (859)
T PF01576_consen 254 EETRAKQALEKQLRQLEHELEQLREQLE 281 (859)
T ss_dssp ----------------------------
T ss_pred hHhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 544 55666667777777766654
No 23
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=92.99 E-value=6.2 Score=40.11 Aligned_cols=194 Identities=21% Similarity=0.252 Sum_probs=118.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhH-----HhHHHHHHhHHHHHHHHHHHhhh-hHhhhHHH
Q 025508 13 LSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLK-----KENERARNSYTESLENLADQLER-KAKCQSLK 86 (251)
Q Consensus 13 L~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk-----~dneRLrklytEsL~~~a~qle~-rtk~qsLk 86 (251)
..--.++.++.-+...|+|..++.+..|.++=+.++..+.... .+...+-.. .+.-..++.+... -.+.-++.
T Consensus 315 ~EKIa~LEqEKEHw~LEaQL~kIKLEKEnkRiadLekevak~~v~~s~~e~~~l~~~-~e~~se~s~~~~~e~~~~t~l~ 393 (518)
T PF10212_consen 315 QEKIAKLEQEKEHWMLEAQLAKIKLEKENKRIADLEKEVAKGQVAESSQESSVLSEA-SEQQSEASSQSVDEPLQPTSLS 393 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhhccc-cccccccccccccccccccccc
Confidence 3344566778889999999999999999998776666443221 111111000 0000111111000 01222232
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHh
Q 025508 87 EELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFD 166 (251)
Q Consensus 87 EEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~e 166 (251)
.-+..-.+.. .-|.+.| -..++.-|..+|++|=.++..+- .-.....+-.++|..||+....+
T Consensus 394 gml~~~~~~~-~~E~esR--E~LIk~~Y~~RI~eLt~qlQ~ad--------------SKa~~f~~Ec~aL~~rL~~aE~e 456 (518)
T PF10212_consen 394 GMLTSTSEQE-SPEEESR--EQLIKSYYMSRIEELTSQLQHAD--------------SKAVHFYAECRALQKRLESAEKE 456 (518)
T ss_pred cccccccccc-CCchhhH--HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3233322222 2244444 25578889888888877665432 22334455566777777665442
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhhhhHHHHHHHHHhhhhhhHHHH
Q 025508 167 VEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIMKLRKENEILK 241 (251)
Q Consensus 167 ve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekElli~ktK~~eqqrD~tS~~hVetLKqKiMKLRKENE~LK 241 (251)
-+ .+. ++-...++++..+|.||-..|..+++|.+.+| -|+-.|--++-+-+.+.+.||
T Consensus 457 k~------------~l~---eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MS--EHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 457 KE------------SLE---EELKEANQNISRLQDELETTRRNYEEQLSMMS--EHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HH------------HHH---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHh
Confidence 21 122 23445677899999999999999999999986 699999999999999999999
No 24
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=92.95 E-value=17 Score=40.06 Aligned_cols=156 Identities=20% Similarity=0.266 Sum_probs=117.0
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHH-------------------------HhhhhhHHHhHHHHHHHhhhhHHhHHHHH
Q 025508 8 GMESLLSDFDQIYEDFKRAISEVQLL-------------------------RSSCNAETKRREALEITCNTLKKENERAR 62 (251)
Q Consensus 8 emesLL~~Fd~i~e~fk~g~~Eiq~L-------------------------rs~~~aE~k~ReALE~tc~~Lk~dneRLr 62 (251)
....|+-+|+-.|..+-|-.-+...+ -+.+..+.+.+.+|+-+|++|++-+-+|+
T Consensus 111 hir~llk~r~~~~k~~id~~qe~se~i~e~~le~vGl~~~~~~s~s~~~~~~sp~~~~~~~~~hL~velAdle~kir~Lr 190 (1195)
T KOG4643|consen 111 HIRLLLKDRKKKWKSVIDDLQEASEKIAEKLLELVGLEKKYRESRSGKELYKSPYDIVVKKNLHLEVELADLEKKIRTLR 190 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeeccccCCCCCCCcchhhcchhHHHHHHHHHHHHHHHHHH
Confidence 45678888888887776655544332 23456678899999999999998877766
Q ss_pred HhHHHHHHHHHHHhhhhHhhhHHHHHHHhhhhhhhhhHHH----------------------------------HHHHHH
Q 025508 63 NSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYE----------------------------------LRKVID 108 (251)
Q Consensus 63 klytEsL~~~a~qle~rtk~qsLkEEL~r~n~e~lskE~E----------------------------------h~raie 108 (251)
---.| +|-+=++.|...+-|+-|+.+.+-++-.--.+ ++--+|
T Consensus 191 qElEE---K~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlmDs~fykdRve 267 (1195)
T KOG4643|consen 191 QELEE---KFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLMDSDFYKDRVE 267 (1195)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHH
Confidence 55544 66677889999999999999887665332222 344567
Q ss_pred HHhHHHHH---hHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHh
Q 025508 109 SIKQDYAA---KARDFEDQIRSLMLEK--ATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFD 166 (251)
Q Consensus 109 ~Lk~~~~~---~i~~LE~qi~~~~~q~--at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~e 166 (251)
.|++++.- .-.=|+.||..+-.+- +|-|..|.||+++|+....|-++...++++..-+
T Consensus 268 elkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eE 330 (1195)
T KOG4643|consen 268 ELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEE 330 (1195)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 77777443 2234788999988877 9999999999999999999999999998877654
No 25
>PRK09039 hypothetical protein; Validated
Probab=92.68 E-value=3.1 Score=39.21 Aligned_cols=47 Identities=11% Similarity=0.102 Sum_probs=27.4
Q ss_pred HHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhh
Q 025508 115 AAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLD 161 (251)
Q Consensus 115 ~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~Le 161 (251)
+.++..|+.||+.+=.-.+.+-..-..|...|++..+...++..+-+
T Consensus 52 ~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~ 98 (343)
T PRK09039 52 DSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERS 98 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666665555556666666666666666666665544443
No 26
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=92.66 E-value=0.14 Score=51.67 Aligned_cols=40 Identities=28% Similarity=0.326 Sum_probs=25.1
Q ss_pred hhhhHHHhhhhhhhhhhHHHHHHHHHhhhhhhHHHHhhhhh
Q 025508 206 NRTKMAEHNRDLTSVRSVETLKLKIMKLRKENEILKRKLNS 246 (251)
Q Consensus 206 ~ktK~~eqqrD~tS~~hVetLKqKiMKLRKENE~LKR~l~~ 246 (251)
++||+.. .+|-....+-.--+.-+-.||+||+.|+.++..
T Consensus 545 ~~trVL~-lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~ 584 (722)
T PF05557_consen 545 SKTRVLH-LRDNPTSKAEQIKKSTLEALQAENEDLLARLRS 584 (722)
T ss_dssp TTEEEEE-ESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeee-eCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444442 334333333344467888999999999999943
No 27
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=92.52 E-value=5 Score=32.69 Aligned_cols=128 Identities=21% Similarity=0.318 Sum_probs=96.7
Q ss_pred HHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhh-HHHhhhhhhhhhhhhhHHHHHHHHHHhHHHH
Q 025508 115 AAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQ-VKFDVEMKYNLEIQDLKDCLLLEQEEKNELN 193 (251)
Q Consensus 115 ~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~Leq-V~~eve~kY~~EIqdLkD~L~~EqEeKn~l~ 193 (251)
..++..|+..+..+....+..++.+..++.|+..+.......-++.++ |.. |..=-..|+.||.-+.--+.+-+.+.
T Consensus 2 ~~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~--Ha~~~~~L~~lr~e~~~~~~~~~~l~ 79 (132)
T PF07926_consen 2 ESELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVK--HAEDIKELQQLREELQELQQEINELK 79 (132)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999999999998877766655555432 111 12223457788888888888888999
Q ss_pred HHHHHHHHHHHHhhhhHHHhhhhhhhhhhHHHHHHHHHhhhhhhHHHHhhhhh
Q 025508 194 KRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIMKLRKENEILKRKLNS 246 (251)
Q Consensus 194 ~kLq~~ekElli~ktK~~eqqrD~tS~~hVetLKqKiMKLRKENE~LKR~l~~ 246 (251)
.....+...|--.+.+..++...+ ...+..++.++--|...|-.|=-+|..
T Consensus 80 ~~~~~a~~~l~~~e~sw~~qk~~l--e~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 80 AEAESAKAELEESEASWEEQKEQL--EKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999998888887777766555 356788899999999988888666643
No 28
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=92.38 E-value=2.3 Score=32.45 Aligned_cols=49 Identities=22% Similarity=0.368 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHH
Q 025508 14 SDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERAR 62 (251)
Q Consensus 14 ~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLr 62 (251)
.-|+++..-|..||.-|..|+-....--.+-.+|......|+.+|++|+
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4588888888888888888876655555555666666666777777665
No 29
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=92.33 E-value=7.6 Score=34.36 Aligned_cols=86 Identities=20% Similarity=0.263 Sum_probs=40.9
Q ss_pred HHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhh------hhhhhhhhhhHHHHHHHHHH
Q 025508 115 AAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVE------MKYNLEIQDLKDCLLLEQEE 188 (251)
Q Consensus 115 ~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve------~kY~~EIqdLkD~L~~EqEe 188 (251)
+.+|..||..|..+--..-+-|+...+.-.-.......|..|..+|..+...++ .++...|.+|.+-|.-+.+.
T Consensus 140 E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~ 219 (237)
T PF00261_consen 140 ESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEK 219 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444443333322 24455666666666666666
Q ss_pred hHHHHHHHHHHH
Q 025508 189 KNELNKRVQDLE 200 (251)
Q Consensus 189 Kn~l~~kLq~~e 200 (251)
...+.+.|-..=
T Consensus 220 ~~~~~~eld~~l 231 (237)
T PF00261_consen 220 YKKVQEELDQTL 231 (237)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666554443
No 30
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=91.27 E-value=0.06 Score=55.96 Aligned_cols=189 Identities=17% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHHhhhhhhhhh
Q 025508 20 YEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSK 99 (251)
Q Consensus 20 ~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~r~n~e~lsk 99 (251)
...-...-.++.-++..+..|++.|.+|.....++..|++.|+..|.|--..-. ++...+..+..||.-+...+-.-
T Consensus 235 ~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~---~l~~qlsk~~~El~~~k~K~e~e 311 (859)
T PF01576_consen 235 QREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKS---ELERQLSKLNAELEQWKKKYEEE 311 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHH---HHHHHHHHHhhHHHHHHHHHHHH
Confidence 334445567788899999999999999999999999999999998875332111 11122223344444443333332
Q ss_pred HHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhH
Q 025508 100 EYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLK 179 (251)
Q Consensus 100 E~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLk 179 (251)
-..+-..++..|.+....+.+++.++-.+....+.-+-+..+|.+++.++...++-.......... -.-+|-..|.+++
T Consensus 312 ~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeK-Kqr~fDk~l~e~k 390 (859)
T PF01576_consen 312 AEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEK-KQRKFDKQLAEWK 390 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHH
Confidence 233344678889999999999999999999999999999999999999998888877665544443 2356777788888
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHH
Q 025508 180 DCLLLEQEEKNELNKRVQDLEKELLMNRTKMAE 212 (251)
Q Consensus 180 D~L~~EqEeKn~l~~kLq~~ekElli~ktK~~e 212 (251)
..+.-.+.+.+.+.+....++-+++-.+..+.+
T Consensus 391 ~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee 423 (859)
T PF01576_consen 391 AKVEELQAERDAAQREARELETELFKLKNELEE 423 (859)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHH
Confidence 877777777777777777777776666655544
No 31
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.23 E-value=7.8 Score=34.06 Aligned_cols=125 Identities=25% Similarity=0.327 Sum_probs=89.3
Q ss_pred HHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHH
Q 025508 101 YELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKD 180 (251)
Q Consensus 101 ~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD 180 (251)
..|.+|...+|.=|.. --..|=+.|+.|+.+++..+.-.....+.+..+ ..|...|..
T Consensus 5 ~~He~af~~iK~YYnd--------------IT~~NL~lIksLKeei~emkk~e~~~~k~m~ei--------~~eN~~L~e 62 (201)
T PF13851_consen 5 KNHEKAFQEIKNYYND--------------ITLNNLELIKSLKEEIAEMKKKEERNEKLMAEI--------SQENKRLSE 62 (201)
T ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhH
Confidence 4566666666655432 234556788888888888877666555555444 457889999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHH---HhhhhHHHhhhhhhh-hhhHHHHHHHHHhhhhhhHHHHhhhhhc
Q 025508 181 CLLLEQEEKNELNKRVQDLEKELL---MNRTKMAEHNRDLTS-VRSVETLKLKIMKLRKENEILKRKLNSS 247 (251)
Q Consensus 181 ~L~~EqEeKn~l~~kLq~~ekEll---i~ktK~~eqqrD~tS-~~hVetLKqKiMKLRKENE~LKR~l~~s 247 (251)
-|.--+++...|.++|.+.++.-. -.|.++......+.+ -|.-+.|.|++-+|-.|-+.|.+++..+
T Consensus 63 pL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~ 133 (201)
T PF13851_consen 63 PLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESA 133 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887633 245555444333332 4788889999999999999999888754
No 32
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.79 E-value=37 Score=37.70 Aligned_cols=187 Identities=21% Similarity=0.295 Sum_probs=103.2
Q ss_pred hhhhHHhHHHHHHhHHHHH--------HHHHHHhh-hhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHH
Q 025508 51 CNTLKKENERARNSYTESL--------ENLADQLE-RKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDF 121 (251)
Q Consensus 51 c~~Lk~dneRLrklytEsL--------~~~a~qle-~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~L 121 (251)
.+.+..|.+||+++|..+= .+.+.+++ -+++.-.+.+.+++-..++.+.|++-+.--.+--..+.-.+..|
T Consensus 220 ~q~~~~dle~l~R~~ia~eY~~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L 299 (1174)
T KOG0933|consen 220 YQKINRDLERLSRICIAYEYLQAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKAL 299 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhH
Confidence 3567788888888887542 23333332 34455556666666666666665554332222222233333466
Q ss_pred HHHHHHHHHHhhhhHHHHHHH-------HHHHHHhhHHHHHHHhh----------------------------hhhHHH-
Q 025508 122 EDQIRSLMLEKATNEATISNL-------HQDLAAHKMHMQTLAKK----------------------------LDQVKF- 165 (251)
Q Consensus 122 E~qi~~~~~q~at~Ea~I~qL-------~~dLaahk~hid~L~~~----------------------------LeqV~~- 165 (251)
++++.++.-.-...+..++.. +.++.+....|--+... ++.-+.
T Consensus 300 ~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~ 379 (1174)
T KOG0933|consen 300 EDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEEL 379 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 666666555444444333333 22222222222111111 111111
Q ss_pred ------------hhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhh-hhhHHHHHHHHHh
Q 025508 166 ------------DVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTS-VRSVETLKLKIMK 232 (251)
Q Consensus 166 ------------eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekElli~ktK~~eqqrD~tS-~~hVetLKqKiMK 232 (251)
+.+.-|...+++-|+-+..-+-+..-..-|++-+.+||.-..-+.+.-..+..+ +.+++.++--+-+
T Consensus 380 ~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~ 459 (1174)
T KOG0933|consen 380 VESLTAGLSSNEDEEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEK 459 (1174)
T ss_pred HHHHhcccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 135667778888888888888888888899999999998887777766555443 3455555555555
Q ss_pred hhhhh
Q 025508 233 LRKEN 237 (251)
Q Consensus 233 LRKEN 237 (251)
||+..
T Consensus 460 l~~~l 464 (1174)
T KOG0933|consen 460 LKKRL 464 (1174)
T ss_pred HHHHH
Confidence 55543
No 33
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=89.47 E-value=28 Score=35.80 Aligned_cols=90 Identities=17% Similarity=0.283 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhh--hhhhhhhhHHHHHHHHH----HhHHHH
Q 025508 120 DFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMK--YNLEIQDLKDCLLLEQE----EKNELN 193 (251)
Q Consensus 120 ~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~k--Y~~EIqdLkD~L~~EqE----eKn~l~ 193 (251)
.|-.+|....++..-......++..++.+.+..+..+..+|.--...+..- =-.++...+|..|.|.- +..+|.
T Consensus 259 eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~ 338 (546)
T PF07888_consen 259 ELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLK 338 (546)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 344556666666665566666777777777777777777776555544432 12355556666666543 345566
Q ss_pred HHHHHHHHHHHHhhhh
Q 025508 194 KRVQDLEKELLMNRTK 209 (251)
Q Consensus 194 ~kLq~~ekElli~ktK 209 (251)
.+|.++.-+|.-.++.
T Consensus 339 ~qLad~~l~lke~~~q 354 (546)
T PF07888_consen 339 LQLADASLELKEGRSQ 354 (546)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666555444433
No 34
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=88.01 E-value=37 Score=35.47 Aligned_cols=105 Identities=26% Similarity=0.313 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHH
Q 025508 117 KARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRV 196 (251)
Q Consensus 117 ~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kL 196 (251)
+..+||..|+.+..+....|..+..|..++.....+ + -.=+.|++.|--.|.+=|+..--|-+-|
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~--------------~-~e~~~~~e~L~~aL~amqdk~~~LE~sL 610 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIRELESELQELRKY--------------E-KESEKDTEVLMSALSAMQDKNQHLENSL 610 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H-hhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 445566666666666666665555555555221111 0 1114577777777776665554444433
Q ss_pred HHHHHHHHHhhhhHHHhhhhhhh-----hhhHHHHHHHHHhhhhhhHHHHhhhhhc
Q 025508 197 QDLEKELLMNRTKMAEHNRDLTS-----VRSVETLKLKIMKLRKENEILKRKLNSS 247 (251)
Q Consensus 197 q~~ekElli~ktK~~eqqrD~tS-----~~hVetLKqKiMKLRKENE~LKR~l~~s 247 (251)
- +| +|+|+ |+-| -|++|-+...|++=-+|..+||.|++.-
T Consensus 611 s-aE-----triKl-----dLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~ 655 (697)
T PF09726_consen 611 S-AE-----TRIKL-----DLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL 655 (697)
T ss_pred h-HH-----HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 11 44443 4443 5888999999999999999999998753
No 35
>PRK09039 hypothetical protein; Validated
Probab=87.70 E-value=25 Score=33.20 Aligned_cols=105 Identities=18% Similarity=0.174 Sum_probs=52.8
Q ss_pred hhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHH------HHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHH
Q 025508 81 KCQSLKEELKRVNDEHLSKEYELRKVIDSIKQD------YAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQ 154 (251)
Q Consensus 81 k~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~------~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid 154 (251)
....|-.+|..++.++-..+..-.+.-..+... -+...+.|++.+......-+..-.-|..|+++|++.+.++.
T Consensus 75 ~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla 154 (343)
T PRK09039 75 GNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLA 154 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344455555555555444443333222222211 12344455555555555555555556666666666666666
Q ss_pred HHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHH
Q 025508 155 TLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQ 186 (251)
Q Consensus 155 ~L~~~LeqV~~eve~kY~~EIqdLkD~L~~Eq 186 (251)
.|..-|+-..... ...+..|.+|.--|..--
T Consensus 155 ~le~~L~~ae~~~-~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 155 ALEAALDASEKRD-RESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 6666665555544 344455555555554443
No 36
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=87.65 E-value=21 Score=32.29 Aligned_cols=57 Identities=14% Similarity=0.318 Sum_probs=32.9
Q ss_pred HHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhH
Q 025508 107 IDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQV 163 (251)
Q Consensus 107 ie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV 163 (251)
+..-...+......+.+++..+..+.+...+.|.+++..+.+.+..++.+...++..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~ 184 (423)
T TIGR01843 128 IKGQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEAR 184 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455555555555555556666666666666666666666666666554
No 37
>PHA02562 46 endonuclease subunit; Provisional
Probab=87.54 E-value=27 Score=33.40 Aligned_cols=75 Identities=16% Similarity=0.241 Sum_probs=45.0
Q ss_pred hhhHHHHHHHhhhhhhhhhHHHH---HHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHH
Q 025508 81 KCQSLKEELKRVNDEHLSKEYEL---RKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQT 155 (251)
Q Consensus 81 k~qsLkEEL~r~n~e~lskE~Eh---~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~ 155 (251)
++..++.++.....++...+.+. .+.++.++......+..+++++..+..+...-++-+.+|+.+|....+.++.
T Consensus 175 ~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~ 252 (562)
T PHA02562 175 KIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIED 252 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 33344444444444444444333 3666777777777777777777777777777777777776666666555443
No 38
>PRK01156 chromosome segregation protein; Provisional
Probab=87.34 E-value=38 Score=34.90 Aligned_cols=79 Identities=14% Similarity=0.113 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhh---hhHhhhHHHHHHHhhhhhhh
Q 025508 21 EDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLE---RKAKCQSLKEELKRVNDEHL 97 (251)
Q Consensus 21 e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle---~rtk~qsLkEEL~r~n~e~l 97 (251)
.+++..+..+..--..+..+...=+.....+..++...+.+.+++.+.-.-...--+ .-..+.+|+.+++..+.++.
T Consensus 301 ~~~~~~l~~l~~~l~~l~~~l~~~e~~~~~~e~~~~~~~e~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~l~~~~~~~~ 380 (895)
T PRK01156 301 FKYKNDIENKKQILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIE 380 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666655555556666666666666666676666666655443322222222 22234455555555544444
Q ss_pred hh
Q 025508 98 SK 99 (251)
Q Consensus 98 sk 99 (251)
..
T Consensus 381 ~~ 382 (895)
T PRK01156 381 EY 382 (895)
T ss_pred Hh
Confidence 33
No 39
>PRK10884 SH3 domain-containing protein; Provisional
Probab=87.31 E-value=9.8 Score=33.93 Aligned_cols=80 Identities=10% Similarity=0.162 Sum_probs=49.6
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhh
Q 025508 140 SNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTS 219 (251)
Q Consensus 140 ~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekElli~ktK~~eqqrD~tS 219 (251)
..|.++++..++-.+-+.+..++...+...++ .+..+.+.-=.+++..|+.+|+.+++++...+++....+++...
T Consensus 96 p~le~el~~l~~~l~~~~~~~~~~~~~l~~~~----~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~ 171 (206)
T PRK10884 96 PDLENQVKTLTDKLNNIDNTWNQRTAEMQQKV----AQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIM 171 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555444444455555554443332 23444433224567778888888888888888888888888888
Q ss_pred hhhH
Q 025508 220 VRSV 223 (251)
Q Consensus 220 ~~hV 223 (251)
.|.+
T Consensus 172 ~wf~ 175 (206)
T PRK10884 172 QWFM 175 (206)
T ss_pred HHHH
Confidence 8775
No 40
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=87.18 E-value=42 Score=35.13 Aligned_cols=160 Identities=22% Similarity=0.268 Sum_probs=102.3
Q ss_pred HHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHH----HHHhHH---HHHHHHHHHhhhhHhhhHHHHHHHhhhhhhhhhHH
Q 025508 29 EVQLLRSSCNAETKRREALEITCNTLKKENER----ARNSYT---ESLENLADQLERKAKCQSLKEELKRVNDEHLSKEY 101 (251)
Q Consensus 29 Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneR----Lrklyt---EsL~~~a~qle~rtk~qsLkEEL~r~n~e~lskE~ 101 (251)
-+++|--++..|-..|.+||...+..++..-. ..+.-+ -+-.--++. +|.+-+-|-.|++++..++..+|+
T Consensus 489 ~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~--~r~r~~~lE~E~~~lr~elk~kee 566 (697)
T PF09726_consen 489 SLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAES--CRQRRRQLESELKKLRRELKQKEE 566 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888999999999887766543211 111100 000012222 344456666777777777777766
Q ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHH
Q 025508 102 ELRKVIDSIKQDYAAKARDFEDQIRSLMLE-KATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKD 180 (251)
Q Consensus 102 Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q-~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD 180 (251)
.-.. ||..+..+-.. +. ++.-+.-|...|+|..+.-+.|-+.|- .|.+.+ +||=-
T Consensus 567 ~~~~---------------~e~~~~~lr~~~~e-~~~~~e~L~~aL~amqdk~~~LE~sLs-----aEtriK---ldLfs 622 (697)
T PF09726_consen 567 QIRE---------------LESELQELRKYEKE-SEKDTEVLMSALSAMQDKNQHLENSLS-----AETRIK---LDLFS 622 (697)
T ss_pred HHHH---------------HHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHhhh-----HHHHHH---HHHHH
Confidence 5443 34444333332 22 455567788889998888888888874 233333 46777
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHhh
Q 025508 181 CLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHN 214 (251)
Q Consensus 181 ~L~~EqEeKn~l~~kLq~~ekElli~ktK~~eqq 214 (251)
+|--..-+-..++.++..-++|+.-.|+|+++-.
T Consensus 623 aLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~ 656 (697)
T PF09726_consen 623 ALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL 656 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777778888899999999999999988743
No 41
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=86.96 E-value=21 Score=31.59 Aligned_cols=40 Identities=25% Similarity=0.334 Sum_probs=30.2
Q ss_pred hHHHHHhhHHHHHHHHHHHH---------------HHHHHHHhhhhhHHHhHHHH
Q 025508 8 GMESLLSDFDQIYEDFKRAI---------------SEVQLLRSSCNAETKRREAL 47 (251)
Q Consensus 8 emesLL~~Fd~i~e~fk~g~---------------~Eiq~Lrs~~~aE~k~ReAL 47 (251)
-+.++-..|..|+.++.+.. --|+.|....++|+++|.-.
T Consensus 6 KL~~i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~ 60 (247)
T PF06705_consen 6 KLASINERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVES 60 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677888888888887765 34677888888888888644
No 42
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.96 E-value=59 Score=36.63 Aligned_cols=145 Identities=19% Similarity=0.253 Sum_probs=83.0
Q ss_pred hhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHhhHHHH
Q 025508 82 CQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKAT-------NEATISNLHQDLAAHKMHMQ 154 (251)
Q Consensus 82 ~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at-------~Ea~I~qL~~dLaahk~hid 154 (251)
|.+++.++..+..+...+++..++.+ .++..|+++|-..-....- ..--|.++..++.++.-.-.
T Consensus 386 ~~~~k~~~~~~e~~~vk~~E~lK~~~--------~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~ 457 (1293)
T KOG0996|consen 386 FESLKKKFQDLEREDVKREEKLKRLT--------SKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLE 457 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433333 2344455554444333332 23334455555555555555
Q ss_pred HHHhhhhhHHHhhh---hhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhhhhHHHHHHHHH
Q 025508 155 TLAKKLDQVKFDVE---MKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIM 231 (251)
Q Consensus 155 ~L~~~LeqV~~eve---~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekElli~ktK~~eqqrD~tS~~hVetLKqKiM 231 (251)
.+...|+.+..... ..|..||.++.+.|+=.-...|....+++-+|-||-|..-+...-+ ..|++||-++-
T Consensus 458 ~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~------~~~e~lk~~L~ 531 (1293)
T KOG0996|consen 458 KEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGL------KKVEELKGKLL 531 (1293)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 55555555554443 3477888899999998889999999999999999887766555443 34556666655
Q ss_pred hhhhhhHHH
Q 025508 232 KLRKENEIL 240 (251)
Q Consensus 232 KLRKENE~L 240 (251)
..+..++-.
T Consensus 532 ~~~~~~~e~ 540 (1293)
T KOG0996|consen 532 ASSESLKEK 540 (1293)
T ss_pred HHHHHHHHH
Confidence 554444433
No 43
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=86.60 E-value=27 Score=32.40 Aligned_cols=154 Identities=19% Similarity=0.283 Sum_probs=75.6
Q ss_pred HHHHHHHhhhhhHHHh-------------HHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHHhhhh
Q 025508 28 SEVQLLRSSCNAETKR-------------REALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVND 94 (251)
Q Consensus 28 ~Eiq~Lrs~~~aE~k~-------------ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~r~n~ 94 (251)
++.+.++..|-.++|. .+.|+.....|+.|.+.|.+ +-+-+..+...+ +.+..+|..|+.....
T Consensus 122 ~q~~~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~-~~~~l~~~~~~l--~~~~~~L~~e~~~Lk~ 198 (325)
T PF08317_consen 122 NQFQLVKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDK-QLEQLDELLPKL--RERKAELEEELENLKQ 198 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 4455555555555553 57788888888888888774 444555555444 3455666666665554
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhh
Q 025508 95 EHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLE 174 (251)
Q Consensus 95 e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~E 174 (251)
..-..+..-.-.++.++ ..|...-.+.+..-..+.+|+.++.+...-|..+.... .++..+
T Consensus 199 ~~~e~~~~D~~eL~~lr-----------~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k--------~~l~~e 259 (325)
T PF08317_consen 199 LVEEIESCDQEELEALR-----------QELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQK--------QELLAE 259 (325)
T ss_pred HHhhhhhcCHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH
Confidence 44333333333333333 22222222222222333333333333333333332222 234445
Q ss_pred hhhhHHHH----HHHHHHhHHHHHHHHHHHHHH
Q 025508 175 IQDLKDCL----LLEQEEKNELNKRVQDLEKEL 203 (251)
Q Consensus 175 IqdLkD~L----~~EqEeKn~l~~kLq~~ekEl 203 (251)
|.++...+ .....|-..|..++..+|+-.
T Consensus 260 I~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~ 292 (325)
T PF08317_consen 260 IAEAEKIREECRGWTRSEVKRLKAKVDALEKLT 292 (325)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 55554333 244555666666666666543
No 44
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=86.42 E-value=42 Score=34.49 Aligned_cols=89 Identities=17% Similarity=0.225 Sum_probs=49.3
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHH--------------HHHHHhhhhhHH---Hhhhhhhhhhh
Q 025508 113 DYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMH--------------MQTLAKKLDQVK---FDVEMKYNLEI 175 (251)
Q Consensus 113 ~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~h--------------id~L~~~LeqV~---~eve~kY~~EI 175 (251)
.+......|-.+++.+.-+..+.+.-+.-|+.+|++..+- ..-|..+|.... .+-.+++..|.
T Consensus 280 ~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qEk 359 (546)
T PF07888_consen 280 QLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQEK 359 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556677778888777777777777777776654332 222222222221 12235666666
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHH
Q 025508 176 QDLKDCLLLEQEEKNELNKRVQDLEK 201 (251)
Q Consensus 176 qdLkD~L~~EqEeKn~l~~kLq~~ek 201 (251)
+.|....-....+--+|+..++.+++
T Consensus 360 ~~l~~~~e~~k~~ie~L~~el~~~e~ 385 (546)
T PF07888_consen 360 QALQHSAEADKDEIEKLSRELQMLEE 385 (546)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 66665544444444556666655554
No 45
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=86.31 E-value=0.22 Score=50.33 Aligned_cols=114 Identities=23% Similarity=0.389 Sum_probs=0.0
Q ss_pred hHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhH
Q 025508 111 KQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKN 190 (251)
Q Consensus 111 k~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn 190 (251)
+.+|...+..++..|..+..+ ++. ....-.+..+.++-+|+|..+-++|. +|..+|+-.|..| ++-+
T Consensus 262 ~~d~~~~~e~le~ei~~L~q~---~~e-L~~~A~~a~~LrDElD~lR~~a~r~~-----klE~~ve~YKkKL----ed~~ 328 (713)
T PF05622_consen 262 RDDLKIELEELEKEIDELRQE---NEE-LQAEAREARALRDELDELREKADRAD-----KLENEVEKYKKKL----EDLE 328 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHhhhHHHHHHHHHHHH-----HHHHHHHHHHHHH----HHHH
Confidence 344444555555544433222 111 11223456677888888877666654 4455555555444 2345
Q ss_pred HHHHHHHHHHHHH---HHhhhhHHHhhhhhhhhh-hHHHHHHHHHhhhhhh
Q 025508 191 ELNKRVQDLEKEL---LMNRTKMAEHNRDLTSVR-SVETLKLKIMKLRKEN 237 (251)
Q Consensus 191 ~l~~kLq~~ekEl---li~ktK~~eqqrD~tS~~-hVetLKqKiMKLRKEN 237 (251)
++.++++.|+..- +=.++.++++.+...+.+ +++++|+.|..|..+.
T Consensus 329 ~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l 379 (713)
T PF05622_consen 329 DLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKL 379 (713)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666665532 234566666666544332 5556555555554433
No 46
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=86.17 E-value=5.3 Score=34.29 Aligned_cols=80 Identities=25% Similarity=0.345 Sum_probs=34.5
Q ss_pred HHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHH
Q 025508 115 AAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNK 194 (251)
Q Consensus 115 ~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~ 194 (251)
..++..+..++..+-.....+...|..|..+++.++.-+..|...+..- ..-|+.|+|.+.+=+-+-|-+..
T Consensus 94 ~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek--------~k~~e~l~DE~~~L~l~~~~~e~ 165 (194)
T PF08614_consen 94 AQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEK--------NKANEILQDELQALQLQLNMLEE 165 (194)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444443333333322 22456777777777777788888
Q ss_pred HHHHHHHH
Q 025508 195 RVQDLEKE 202 (251)
Q Consensus 195 kLq~~ekE 202 (251)
++..+++|
T Consensus 166 k~~~l~~E 173 (194)
T PF08614_consen 166 KLRKLEEE 173 (194)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877765
No 47
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=86.03 E-value=38 Score=33.62 Aligned_cols=71 Identities=25% Similarity=0.331 Sum_probs=44.1
Q ss_pred hhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHH-hhhhhhhhhhHHHHHHHHHhhhhhhHHHH
Q 025508 171 YNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMAE-HNRDLTSVRSVETLKLKIMKLRKENEILK 241 (251)
Q Consensus 171 Y~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekElli~ktK~~e-qqrD~tS~~hVetLKqKiMKLRKENE~LK 241 (251)
...|+.+.|..|..-.++-+.|......+..||--.|.-++. +++...+.-.|..|.-++-++|.+.+..+
T Consensus 286 ~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~ 357 (522)
T PF05701_consen 286 AKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAK 357 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Confidence 345666666666666667777777777777776655555554 33444455556667766666666665544
No 48
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=85.90 E-value=52 Score=35.02 Aligned_cols=184 Identities=22% Similarity=0.320 Sum_probs=103.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHh----HHHHHHhHHHH------------HH-H
Q 025508 9 MESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKE----NERARNSYTES------------LE-N 71 (251)
Q Consensus 9 mesLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~d----neRLrklytEs------------L~-~ 71 (251)
++-...+|.+++.++-....|+.-||... +.++..+.+++++ .+.+.+|.+.- -+ -
T Consensus 109 ld~~~~q~~rl~~E~er~~~El~~lr~~l-------E~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~ 181 (775)
T PF10174_consen 109 LDKAQEQFERLQAERERLQRELERLRKTL-------EELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEA 181 (775)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHH
Confidence 66678899999999999999999999533 3344444444433 34555555411 01 1
Q ss_pred HHHHhhhhHhhhHHHHHHHhhhhhhhhh-HHHHH-----------HHHHHHhHHHHHhHHH-------HHHHHHHHHHHh
Q 025508 72 LADQLERKAKCQSLKEELKRVNDEHLSK-EYELR-----------KVIDSIKQDYAAKARD-------FEDQIRSLMLEK 132 (251)
Q Consensus 72 ~a~qle~rtk~qsLkEEL~r~n~e~lsk-E~Eh~-----------raie~Lk~~~~~~i~~-------LE~qi~~~~~q~ 132 (251)
+...-++.+.|..|..-|.....+.... +.=|+ .++..+=..=+++|.. ||+.|..+-...
T Consensus 182 ~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~ 261 (775)
T PF10174_consen 182 LRRIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRG 261 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1122234444444444444333333111 11111 1333333333444444 466666666666
Q ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHh--------------------hhhhhhhhhhhhHHHHHHHHHHhHHH
Q 025508 133 ATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFD--------------------VEMKYNLEIQDLKDCLLLEQEEKNEL 192 (251)
Q Consensus 133 at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~e--------------------ve~kY~~EIqdLkD~L~~EqEeKn~l 192 (251)
++.++-.+.+-..+.+|++|...+-+++|++.-+ ++.-|+.-|.-||+.|--=+.+++-|
T Consensus 262 ~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~L 341 (775)
T PF10174_consen 262 ELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEML 341 (775)
T ss_pred cccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777778888998888888777776544 33445556666666555555555554
Q ss_pred HHHHHHH
Q 025508 193 NKRVQDL 199 (251)
Q Consensus 193 ~~kLq~~ 199 (251)
+.-+..+
T Consensus 342 qsdve~L 348 (775)
T PF10174_consen 342 QSDVEAL 348 (775)
T ss_pred HHhHHHH
Confidence 4444433
No 49
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=85.89 E-value=56 Score=35.33 Aligned_cols=127 Identities=25% Similarity=0.313 Sum_probs=77.5
Q ss_pred HHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHH
Q 025508 108 DSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQE 187 (251)
Q Consensus 108 e~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqE 187 (251)
++|-.+....|-.|+...-.+---++.+|+|=.+++--+--|-+ -+.++. +.-+.-+..|.+|-.-+..+|.
T Consensus 487 etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~a-------e~~rq~-~~~~~sr~~~~~le~~~~a~qa 558 (961)
T KOG4673|consen 487 ETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQA-------ELTRQK-DYYSNSRALAAALEAQALAEQA 558 (961)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-------HHHHHH-HhhhhHHHHHHHHHHHHHHHHH
Confidence 34444444445555544444444455566665555443333222 122221 1112223467777778888888
Q ss_pred HhHHHHHHHHHHHHHHHHhhhhHH-HhhhhhhhhhhHHHHHHHHHh-----------hhhhhHHHHhhhhhcc
Q 025508 188 EKNELNKRVQDLEKELLMNRTKMA-EHNRDLTSVRSVETLKLKIMK-----------LRKENEILKRKLNSSS 248 (251)
Q Consensus 188 eKn~l~~kLq~~ekElli~ktK~~-eqqrD~tS~~hVetLKqKiMK-----------LRKENE~LKR~l~~s~ 248 (251)
..+++.+ +++|+ +|.|+. .-+|..+=+++|+-|++++-+ +|-||+.|-||+..++
T Consensus 559 t~d~a~~---Dlqk~---nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE 625 (961)
T KOG4673|consen 559 TNDEARS---DLQKE---NRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAE 625 (961)
T ss_pred hhhhhhh---hHHHH---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777 44444 566643 346777889999999999875 8999999999997654
No 50
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=85.62 E-value=28 Score=31.57 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=7.8
Q ss_pred hhHhhhHHHHHHHhhhhhh
Q 025508 78 RKAKCQSLKEELKRVNDEH 96 (251)
Q Consensus 78 ~rtk~qsLkEEL~r~n~e~ 96 (251)
.+..+..+..++..+..++
T Consensus 201 ~~~~~~~~~~~l~~~~~~l 219 (423)
T TIGR01843 201 LERERAEAQGELGRLEAEL 219 (423)
T ss_pred HHHHHHHHHhHHHHHHHHH
Confidence 3344444444444443333
No 51
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=85.55 E-value=36 Score=32.82 Aligned_cols=151 Identities=22% Similarity=0.312 Sum_probs=103.7
Q ss_pred hhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhh-
Q 025508 82 CQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKL- 160 (251)
Q Consensus 82 ~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~L- 160 (251)
.--|+-|+..+..+..-+|..|-..|+.+|++++ +|+.-|.-- --+=--||.|-.+.|.+.++-=-||+++|
T Consensus 8 ia~LrlEidtik~q~qekE~ky~ediei~Kekn~----~Lqk~lKLn---eE~ltkTi~qy~~QLn~L~aENt~L~SkLe 80 (305)
T PF14915_consen 8 IAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKND----DLQKSLKLN---EETLTKTIFQYNGQLNVLKAENTMLNSKLE 80 (305)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHhhh---HHHHHHHHHHHhhhHHHHHHHHHHHhHHHH
Confidence 4467889999999999999999999999998765 444433310 01112389999999999999999999999
Q ss_pred ------hhHHHhhhhhhhhh----hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhhh-hHHHHHHH
Q 025508 161 ------DQVKFDVEMKYNLE----IQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVR-SVETLKLK 229 (251)
Q Consensus 161 ------eqV~~eve~kY~~E----IqdLkD~L~~EqEeKn~l~~kLq~~ekElli~ktK~~eqqrD~tS~~-hVetLKqK 229 (251)
+++.++|++ |++- |+|.--| |-.|.|+..-+|....|-+-.+-|+-- |+++.+ ..+.|-|+
T Consensus 81 ~EKq~kerLEtEiES-~rsRLaaAi~d~dqs----q~skrdlelafqr~rdEw~~lqdkmn~---d~S~lkd~ne~LsQq 152 (305)
T PF14915_consen 81 KEKQNKERLETEIES-YRSRLAAAIQDHDQS----QTSKRDLELAFQRARDEWVRLQDKMNS---DVSNLKDNNEILSQQ 152 (305)
T ss_pred HhHHHHHHHHHHHHH-HHHHHHHHHhhHHHH----HhhHHHHHHHHHHHhhHHHHHHHHhcc---hHHhHHHHhHHHHHH
Confidence 567777776 4333 3333322 456788888888888876655554422 222222 24667777
Q ss_pred HHhhhhhhHHHHhhhhhc
Q 025508 230 IMKLRKENEILKRKLNSS 247 (251)
Q Consensus 230 iMKLRKENE~LKR~l~~s 247 (251)
+.+-.-.-.+|+-.|++.
T Consensus 153 LskaesK~nsLe~elh~t 170 (305)
T PF14915_consen 153 LSKAESKFNSLEIELHHT 170 (305)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777776666676666543
No 52
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=85.52 E-value=51 Score=34.54 Aligned_cols=23 Identities=13% Similarity=0.274 Sum_probs=18.4
Q ss_pred CCCCChhhHHHHHhhHHHHHHHH
Q 025508 1 MAATSDDGMESLLSDFDQIYEDF 23 (251)
Q Consensus 1 MaatsDEemesLL~~Fd~i~e~f 23 (251)
++++++|-.+-|...+..|+++|
T Consensus 530 ~~p~~~E~l~lL~~a~~vlreeY 552 (717)
T PF10168_consen 530 SSPSPQECLELLSQATKVLREEY 552 (717)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888876
No 53
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=85.30 E-value=49 Score=34.17 Aligned_cols=137 Identities=18% Similarity=0.307 Sum_probs=83.8
Q ss_pred hhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhh
Q 025508 82 CQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLD 161 (251)
Q Consensus 82 ~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~Le 161 (251)
...|..|++.+..++-..-.+ ...+..|...-+.++.+||..++.+-.+.+--.....++..|-++-- +.=.=|..|.
T Consensus 89 ~~~L~kElE~L~~qlqaqv~~-ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~S-RAlsQN~eLK 166 (617)
T PF15070_consen 89 AEHLRKELESLEEQLQAQVEN-NEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATAS-RALSQNRELK 166 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHH-HHHHhHHHHH
Confidence 344555665555554443222 23566677777888888888888776665544444444544433211 1101111222
Q ss_pred hHHHhhhh---hhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhh
Q 025508 162 QVKFDVEM---KYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSV 220 (251)
Q Consensus 162 qV~~eve~---kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekElli~ktK~~eqqrD~tS~ 220 (251)
+--.+.+. +-.++==+|.+.|+.|+--+..|..+|-.++..+--.+.+++.+-+++.|.
T Consensus 167 ~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~L 228 (617)
T PF15070_consen 167 EQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSL 228 (617)
T ss_pred HHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 22223322 335666678999999999999999999999988888888877775555553
No 54
>PRK10869 recombination and repair protein; Provisional
Probab=85.18 E-value=44 Score=33.49 Aligned_cols=203 Identities=14% Similarity=0.247 Sum_probs=112.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhH------HHHHHhHHHHHHHHHHHhhhhHhhh
Q 025508 10 ESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKEN------ERARNSYTESLENLADQLERKAKCQ 83 (251)
Q Consensus 10 esLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dn------eRLrklytEsL~~~a~qle~rtk~q 83 (251)
..++..|...|..|+.+..++..++.+...=..+++-|++-+..|..=| +.|..-|. .+.+--+-...++
T Consensus 153 ~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~----~L~n~e~i~~~~~ 228 (553)
T PRK10869 153 TSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEFAPQPGEFEQIDEEYK----RLANSGQLLTTSQ 228 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH----HHHHHHHHHHHHH
Confidence 4688999999999999999999999887666677788888777665422 22222211 1111111111222
Q ss_pred HHHHHHH-----hhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHh
Q 025508 84 SLKEELK-----RVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAK 158 (251)
Q Consensus 84 sLkEEL~-----r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~ 158 (251)
+.-+-|. .+.+.+ ..-.++++.+ .+|.....++-..+..+..+.-.--..+...-.++...-..++.+..
T Consensus 229 ~~~~~L~~~~~~~~~~~l----~~~~~~l~~~-~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~ 303 (553)
T PRK10869 229 NALQLLADGEEVNILSQL----YSAKQLLSEL-IGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQ 303 (553)
T ss_pred HHHHHhcCCCcccHHHHH----HHHHHHHHHH-hhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 2222221 011111 1222444444 34455555666666665555433333333333445555566777788
Q ss_pred hhhhHHHhhhhhhhhhhhhhHHH---HHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhhhh
Q 025508 159 KLDQVKFDVEMKYNLEIQDLKDC---LLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRS 222 (251)
Q Consensus 159 ~LeqV~~eve~kY~~EIqdLkD~---L~~EqEeKn~l~~kLq~~ekElli~ktK~~eqqrD~tS~~h 222 (251)
||..+. ...-||...|.|+-+. +.-|.+.=+.....++.+++++--.+.++.+.-..++..|.
T Consensus 304 Rl~~l~-~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~ 369 (553)
T PRK10869 304 RLSKQI-SLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQ 369 (553)
T ss_pred HHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887765 4677899777766544 34444444444556666776666555555555555555544
No 55
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=85.04 E-value=25 Score=30.51 Aligned_cols=90 Identities=16% Similarity=0.246 Sum_probs=49.0
Q ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHH
Q 025508 133 ATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMAE 212 (251)
Q Consensus 133 at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekElli~ktK~~e 212 (251)
+.=...|.+++..+.+-+..++.+...|........ .+..-.+.....+.--+.+-.....++..++..+..-|..+..
T Consensus 73 ~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~ 151 (302)
T PF10186_consen 73 ERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS-ASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLIQ 151 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555555555555555555 3333333333333333445555666666677777777777776
Q ss_pred hhhhhhhhhhH
Q 025508 213 HNRDLTSVRSV 223 (251)
Q Consensus 213 qqrD~tS~~hV 223 (251)
+....-..+.|
T Consensus 152 ~l~~ifpI~~~ 162 (302)
T PF10186_consen 152 ELSEIFPIEQV 162 (302)
T ss_pred HHHHHhCceee
Confidence 66555544443
No 56
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=84.83 E-value=51 Score=33.96 Aligned_cols=104 Identities=20% Similarity=0.304 Sum_probs=71.2
Q ss_pred hhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhh
Q 025508 81 KCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKL 160 (251)
Q Consensus 81 k~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~L 160 (251)
++--||+|++.+...+..++.+-..+=+.+. .+.-.++.+|+.+..+..-.+.=|.-+..|+.+.+-...++..+.+.|
T Consensus 114 ei~kl~~e~~elr~~~~~~~k~~~~~re~~~-~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 114 EITKLREELKELRKKLEKAEKERRGAREKLD-DYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhhHHHHH-HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3445777777777777777666555544443 355667778888887777777777777777777777777777777777
Q ss_pred hhHHHhhhhhhhhhhhhhHHHHHHHH
Q 025508 161 DQVKFDVEMKYNLEIQDLKDCLLLEQ 186 (251)
Q Consensus 161 eqV~~eve~kY~~EIqdLkD~L~~Eq 186 (251)
|+=+. .-..|++.+|+|.-.|..=+
T Consensus 193 d~Etl-lr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 193 DDETL-LRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred HHHHH-HHHHHHhHHHHHHHHHHHHH
Confidence 66432 34567788888877665543
No 57
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=84.80 E-value=34 Score=31.98 Aligned_cols=145 Identities=19% Similarity=0.218 Sum_probs=81.7
Q ss_pred HHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHH
Q 025508 47 LEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIR 126 (251)
Q Consensus 47 LE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~ 126 (251)
|..+|..|.+-|..|.+.---+=...|. +...|-.--...-.=.-..+.-+.+.++.++.+-..--...+.+++
T Consensus 11 l~~h~~~L~~~N~~L~~~IqdtE~st~~------~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~ 84 (258)
T PF15397_consen 11 LKKHEDFLTKLNKELIKEIQDTEDSTAL------KVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLS 84 (258)
T ss_pred HHHHHHHHHHhhHHHHHHHHhHHhhHHH------HHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHH
Confidence 4578889999999998864333222222 2222222222222333334444445555555555555566666667
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHhhHHHHH-----------HHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHH
Q 025508 127 SLMLEKATNEATISNLHQDLAAHKMHMQT-----------LAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKR 195 (251)
Q Consensus 127 ~~~~q~at~Ea~I~qL~~dLaahk~hid~-----------L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~k 195 (251)
++.-|.-.=+|-|...+.+|....+|+|. |...|+++... -+.|+.+|.-.+.+ +...|+++
T Consensus 85 ~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~----qqdEldel~e~~~~---el~~l~~~ 157 (258)
T PF15397_consen 85 KLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDS----QQDELDELNEMRQM---ELASLSRK 157 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH---HHHHHHHH
Confidence 76666666788888888888888888773 33333333332 33444444444332 34556667
Q ss_pred HHHHHHHHH
Q 025508 196 VQDLEKELL 204 (251)
Q Consensus 196 Lq~~ekEll 204 (251)
.+.-..+++
T Consensus 158 ~q~k~~~il 166 (258)
T PF15397_consen 158 IQEKKEEIL 166 (258)
T ss_pred HHHHHHHHH
Confidence 776666644
No 58
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=84.63 E-value=88 Score=36.57 Aligned_cols=176 Identities=21% Similarity=0.248 Sum_probs=125.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHHhhh
Q 025508 14 SDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVN 93 (251)
Q Consensus 14 ~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~r~n 93 (251)
..|+-...+++-+=+|+..||+-+..=+..|.-|...|..+++.+.+|++--.|....- .+|.+.+.+..
T Consensus 66 q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qk----------r~l~~~le~~~ 135 (1822)
T KOG4674|consen 66 QRLSDLSRQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQK----------RQLMELLERQK 135 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHH----------HHHHHHHHHHH
Confidence 34444445566666666777777776667788889999999999999999888876332 34566666777
Q ss_pred hhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhh
Q 025508 94 DEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNL 173 (251)
Q Consensus 94 ~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~ 173 (251)
.++-.+..+-.+=-+.|+..+. .+.++++++-.+....++...--..|-|+..+..+|..-|..-|--|...... |.-
T Consensus 136 ~ele~l~~~n~~l~~ql~ss~~-~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~-~~r 213 (1822)
T KOG4674|consen 136 AELEALESENKDLNDQLKSSTK-TLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLS-LRR 213 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHh
Confidence 7777777776666666666554 45689999999999999999999999999999999999999988877765543 222
Q ss_pred ----hhhhhHHHHH-------HHHHHhHHHHHHHHHHHH
Q 025508 174 ----EIQDLKDCLL-------LEQEEKNELNKRVQDLEK 201 (251)
Q Consensus 174 ----EIqdLkD~L~-------~EqEeKn~l~~kLq~~ek 201 (251)
+|.+|+-||. ..++-.+.+..+...+++
T Consensus 214 e~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~ 252 (1822)
T KOG4674|consen 214 EHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSK 252 (1822)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666654 444444444444444444
No 59
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=83.76 E-value=24 Score=29.30 Aligned_cols=76 Identities=16% Similarity=0.261 Sum_probs=50.7
Q ss_pred HHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHH
Q 025508 47 LEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFED 123 (251)
Q Consensus 47 LE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~ 123 (251)
+|+-++.|+.++.||-+--.+.=.-++.-+..-....+...++..+..++..++..|...++.+-++.+ .+.+|.+
T Consensus 28 ~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E-~veEL~~ 103 (120)
T PF12325_consen 28 LEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSE-EVEELRA 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH-HHHHHHH
Confidence 356677777777777666555555555555555566777777777788888888888888888777654 2344433
No 60
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=83.17 E-value=51 Score=32.71 Aligned_cols=139 Identities=22% Similarity=0.275 Sum_probs=103.0
Q ss_pred HHHHhhhhHHhHHHHHHhHHHHHHHH---HHHhhhhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHH
Q 025508 47 LEITCNTLKKENERARNSYTESLENL---ADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFED 123 (251)
Q Consensus 47 LE~tc~~Lk~dneRLrklytEsL~~~---a~qle~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~ 123 (251)
|+-.+..+-..+|-||+. .||+..- ++|| ++--|.|+.+|-.+.+ +..+=..|..-+|-+=+.+...-..|+-
T Consensus 73 lq~kirk~~e~~eglr~i-~es~~e~q~e~~qL--~~qnqkL~nqL~~~~~-vf~k~k~~~q~LE~li~~~~EEn~~lql 148 (401)
T PF06785_consen 73 LQTKIRKITEKDEGLRKI-RESVEERQQESEQL--QSQNQKLKNQLFHVRE-VFMKTKGDIQHLEGLIRHLREENQCLQL 148 (401)
T ss_pred HHHHHHHHHhccHHHHHH-HHHHHHHHHHHHHH--HHhHHHHHHHHHHHHH-HHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 444445555556666654 3444332 2333 5667899999999999 8888899999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHH
Q 025508 124 QIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLE 200 (251)
Q Consensus 124 qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~e 200 (251)
|+-.+..+-.-+|--...|..+|+.--+.+++|+. .|+--+..=+..|-.=|..--.|..|.|++=
T Consensus 149 qL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~-----------eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm 214 (401)
T PF06785_consen 149 QLDALQQECGEKEEESQTLNRELAEALAYQQELND-----------EYQATFVEQHSMLDKRQAYIGKLESKVQDLM 214 (401)
T ss_pred hHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH-----------HhhcccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999988998999999999999999999875 3444444555555555666666666666643
No 61
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=83.14 E-value=36 Score=30.97 Aligned_cols=69 Identities=22% Similarity=0.312 Sum_probs=48.3
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhh
Q 025508 87 EELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKK 159 (251)
Q Consensus 87 EEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~ 159 (251)
+|+.+-.+.++.=-..|-.+|-+..++ |+.||+-|+.+-.+.-.-...|.++..++.-.|.+|+.+..-
T Consensus 35 ~e~~kE~~~L~~Er~~h~eeLrqI~~D----In~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 35 EEYRKEMEELLQERMAHVEELRQINQD----INTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334433344443333444444444443 667999999999999888999999999999999999988654
No 62
>PRK11637 AmiB activator; Provisional
Probab=82.32 E-value=47 Score=31.64 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=9.8
Q ss_pred HHHHHHHHHhhhhhhHHHH
Q 025508 223 VETLKLKIMKLRKENEILK 241 (251)
Q Consensus 223 VetLKqKiMKLRKENE~LK 241 (251)
+..|++..-+|.+....++
T Consensus 235 l~~l~~~~~~L~~~I~~l~ 253 (428)
T PRK11637 235 LSELRANESRLRDSIARAE 253 (428)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444
No 63
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=82.07 E-value=36 Score=30.14 Aligned_cols=197 Identities=20% Similarity=0.272 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHH-------HHHHhHHHHHHH------HHHHhhhhHhhhH
Q 025508 18 QIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENE-------RARNSYTESLEN------LADQLERKAKCQS 84 (251)
Q Consensus 18 ~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dne-------RLrklytEsL~~------~a~qle~rtk~qs 84 (251)
.|-.+.-.+-..+..+...+....++++.+|.-+.+|.+-.- +.---+.....+ -++..+ ..+.+
T Consensus 5 ~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~e--r~~k~ 82 (237)
T PF00261_consen 5 QLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESE--RARKV 82 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHC--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 334444455555666666677777777777777666655433 222222222222 222222 22344
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHhH------HHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHh
Q 025508 85 LKEELKRVNDEHLSKEYELRKVIDSIKQ------DYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAK 158 (251)
Q Consensus 85 LkEEL~r~n~e~lskE~Eh~raie~Lk~------~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~ 158 (251)
|-.-.....+.+...|...+.+...+.. .-..++.-+|..+..+..-..+-|+.|..|..+|......+..|--
T Consensus 83 lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~ 162 (237)
T PF00261_consen 83 LENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEA 162 (237)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhh
Confidence 5555555566666666666655544433 2245566777777777777788888888888888888888877776
Q ss_pred hhhhHHHhhhhhhhhhhhhhHHHHHH-----HHH--HhHHHHHHHHHHHHHHHHhhhhHHHhhhhh
Q 025508 159 KLDQVKFDVEMKYNLEIQDLKDCLLL-----EQE--EKNELNKRVQDLEKELLMNRTKMAEHNRDL 217 (251)
Q Consensus 159 ~LeqV~~eve~kY~~EIqdLkD~L~~-----EqE--eKn~l~~kLq~~ekElli~ktK~~eqqrD~ 217 (251)
.-++.... +-.|...|.+|.+-|.- +-. .-+.|.+.+..++.+|--.|.+...=+.++
T Consensus 163 ~~~~~~~r-e~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 163 SEEKASER-EDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655444 36788999999887742 222 235677888888888887777777666655
No 64
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=80.80 E-value=78 Score=33.22 Aligned_cols=16 Identities=38% Similarity=0.422 Sum_probs=7.1
Q ss_pred HHHHHHhhhhhhHHHH
Q 025508 226 LKLKIMKLRKENEILK 241 (251)
Q Consensus 226 LKqKiMKLRKENE~LK 241 (251)
.+..+-.++++.+.+.
T Consensus 724 ~~~~~~~~~~~~~~~~ 739 (908)
T COG0419 724 RKAELEELKKELEKLE 739 (908)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 65
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=80.60 E-value=35 Score=29.05 Aligned_cols=13 Identities=31% Similarity=0.524 Sum_probs=6.3
Q ss_pred HHHHHHHHHHhhH
Q 025508 139 ISNLHQDLAAHKM 151 (251)
Q Consensus 139 I~qL~~dLaahk~ 151 (251)
|..|+.+++..|.
T Consensus 140 i~~lr~~iE~~K~ 152 (177)
T PF07798_consen 140 IANLRTEIESLKW 152 (177)
T ss_pred HHHHHHHHHHHHH
Confidence 4445555554443
No 66
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=80.52 E-value=15 Score=31.46 Aligned_cols=104 Identities=24% Similarity=0.283 Sum_probs=48.6
Q ss_pred HHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHH
Q 025508 45 EALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQ 124 (251)
Q Consensus 45 eALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~q 124 (251)
.+++..+..|..|...+.|.-.+ +-..|..++.++-..+.+....-. --......+..|+.+
T Consensus 70 ~~le~~~~~l~~ELael~r~~~e-----------------l~~~L~~~~~~l~~l~~~~~~~~~-~l~~l~~~~~~L~~~ 131 (194)
T PF08614_consen 70 SSLEQKLAKLQEELAELYRSKGE-----------------LAQQLVELNDELQELEKELSEKER-RLAELEAELAQLEEK 131 (194)
T ss_dssp -------------------------------------------------------------HHH-HHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccc-----------------ccccccccccccchhhhhHHHHHH-HHHHHHHHHHHHHHH
Confidence 34566677777777666665544 333344444444444433322211 123456677888999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHh
Q 025508 125 IRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFD 166 (251)
Q Consensus 125 i~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~e 166 (251)
|+.+-.+......+|..|+-++.++..+.-++..++..+..|
T Consensus 132 ~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~E 173 (194)
T PF08614_consen 132 IKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEE 173 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998887665
No 67
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=80.00 E-value=51 Score=30.61 Aligned_cols=81 Identities=21% Similarity=0.327 Sum_probs=50.1
Q ss_pred hHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHH----HHHHHhhHHHH
Q 025508 79 KAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLH----QDLAAHKMHMQ 154 (251)
Q Consensus 79 rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~----~dLaahk~hid 154 (251)
+.+..+++.+|.....++..+..+...--..+. .....|+++.++++.++.+.+.-+.++.+-+ .|+...|+.++
T Consensus 208 ~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~-~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~ 286 (325)
T PF08317_consen 208 QEELEALRQELAEQKEEIEAKKKELAELQEELE-ELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVD 286 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 466777788887777777666555444333332 2334567777777777777666666655443 46667777776
Q ss_pred HHHhhh
Q 025508 155 TLAKKL 160 (251)
Q Consensus 155 ~L~~~L 160 (251)
+|-+.+
T Consensus 287 ~Le~~~ 292 (325)
T PF08317_consen 287 ALEKLT 292 (325)
T ss_pred HHHHHH
Confidence 665543
No 68
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=79.85 E-value=44 Score=31.28 Aligned_cols=85 Identities=18% Similarity=0.295 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHH
Q 025508 117 KARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRV 196 (251)
Q Consensus 117 ~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kL 196 (251)
.+..++..++.+..+...-...+..|..+-+....-+..|...++.+..+-. +|-.+.-++.--+.-=+++...+..++
T Consensus 44 ~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~-~~~~~~n~~~~~l~~~~~e~~sl~~q~ 122 (314)
T PF04111_consen 44 DIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEE-EYWREYNELQLELIEFQEERDSLKNQY 122 (314)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333333444444433333333333333333332222 444444444444444444444444444
Q ss_pred HHHHHH
Q 025508 197 QDLEKE 202 (251)
Q Consensus 197 q~~ekE 202 (251)
+.+...
T Consensus 123 ~~~~~~ 128 (314)
T PF04111_consen 123 EYASNQ 128 (314)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 69
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=78.55 E-value=53 Score=30.79 Aligned_cols=102 Identities=14% Similarity=0.267 Sum_probs=34.2
Q ss_pred HHhHHHHHHHHHHHhhhh-------HhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhh
Q 025508 62 RNSYTESLENLADQLERK-------AKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKAT 134 (251)
Q Consensus 62 rklytEsL~~~a~qle~r-------tk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at 134 (251)
++-|.++|..+-..-... .+...|+.|-+....++...|.+.......+. ..+....+|+.....+..+...
T Consensus 25 ~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~-~le~e~~~l~~eE~~~~~~~n~ 103 (314)
T PF04111_consen 25 RDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELE-ELEEELEELDEEEEEYWREYNE 103 (314)
T ss_dssp -----------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666665322222 23333444444444444444433332222211 1222333333333333444444
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHhhhhhHH
Q 025508 135 NEATISNLHQDLAAHKMHMQTLAKKLDQVK 164 (251)
Q Consensus 135 ~Ea~I~qL~~dLaahk~hid~L~~~LeqV~ 164 (251)
...-..++..+....+++++...+.|++++
T Consensus 104 ~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 104 LQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555555555555555543
No 70
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=78.38 E-value=1.5e+02 Score=34.93 Aligned_cols=79 Identities=23% Similarity=0.260 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHH
Q 025508 101 YELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKD 180 (251)
Q Consensus 101 ~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD 180 (251)
.|.+..|+.++ +.+.-|++-+-.+-.+.-...|-+.-|+.+-..||.|-|.|-..+..+-...--+-..+|-+|++
T Consensus 1246 qEl~~~i~kl~----~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~ 1321 (1822)
T KOG4674|consen 1246 QELRDKIEKLN----FELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKE 1321 (1822)
T ss_pred HHHHHHHHHHH----hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 45555555554 45666666666666677778888999999999999999999999999988888888899999999
Q ss_pred HHH
Q 025508 181 CLL 183 (251)
Q Consensus 181 ~L~ 183 (251)
.|.
T Consensus 1322 el~ 1324 (1822)
T KOG4674|consen 1322 ELE 1324 (1822)
T ss_pred HHH
Confidence 887
No 71
>PRK04406 hypothetical protein; Provisional
Probab=78.12 E-value=15 Score=28.10 Aligned_cols=50 Identities=22% Similarity=0.339 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhh
Q 025508 118 ARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDV 167 (251)
Q Consensus 118 i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~ev 167 (251)
+..+|.+|-.+....|--|.+|..|..-+++.-..|+.|...|..+...+
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577777777777777788888888888877777777777666664443
No 72
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=77.41 E-value=51 Score=29.13 Aligned_cols=74 Identities=15% Similarity=0.253 Sum_probs=45.0
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhH
Q 025508 84 SLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQV 163 (251)
Q Consensus 84 sLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV 163 (251)
.+.++.+++..++... +.+..+.+..+.+||.+|..+.-+.+.-.....---.++++.++++.++...++-+
T Consensus 107 ~~~e~~k~le~~~~~~--------~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~ 178 (190)
T PF05266_consen 107 KLLEERKKLEKKIEEK--------EAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENA 178 (190)
T ss_pred HHHHHHHHHHHHHHHH--------HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555554444333 55667778888888888888877644333333333366777777777777666544
Q ss_pred HH
Q 025508 164 KF 165 (251)
Q Consensus 164 ~~ 165 (251)
..
T Consensus 179 e~ 180 (190)
T PF05266_consen 179 EL 180 (190)
T ss_pred HH
Confidence 43
No 73
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=76.86 E-value=82 Score=31.26 Aligned_cols=49 Identities=10% Similarity=0.264 Sum_probs=40.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhH
Q 025508 10 ESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKEN 58 (251)
Q Consensus 10 esLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dn 58 (251)
..++..|.+.|..|+....+++.++.....=..+.+-|+..+..|+.=|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~ 205 (563)
T TIGR00634 157 NEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEAD 205 (563)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCC
Confidence 4688889999999999999999998887777777888888877776543
No 74
>PRK09343 prefoldin subunit beta; Provisional
Probab=76.77 E-value=39 Score=27.48 Aligned_cols=112 Identities=11% Similarity=0.202 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHH-HHHHHHHHhhhhHhhhHHHHHHHhhhhhh
Q 025508 18 QIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTE-SLENLADQLERKAKCQSLKEELKRVNDEH 96 (251)
Q Consensus 18 ~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytE-sL~~~a~qle~rtk~qsLkEEL~r~n~e~ 96 (251)
+|...+..-+.+.|.++..+..=...|..|+......+.=.+.|.++=.. ..++.+.-+=.++-...++.+|+..-+-+
T Consensus 4 ~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~i 83 (121)
T PRK09343 4 NIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELL 83 (121)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777777777777776666666666433 46677777777777777777776665554
Q ss_pred hhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhh
Q 025508 97 LSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKA 133 (251)
Q Consensus 97 lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~a 133 (251)
. ..-..++.-+.....++.+++++|+.++.+-+
T Consensus 84 e----~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~ 116 (121)
T PRK09343 84 E----LRSRTLEKQEKKLREKLKELQAKINEMLSKYY 116 (121)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4 23334444455556666777777777765543
No 75
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=76.64 E-value=64 Score=29.87 Aligned_cols=89 Identities=15% Similarity=0.261 Sum_probs=56.9
Q ss_pred hhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHhhHHHHH
Q 025508 78 RKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLE--KATNEATISNLHQDLAAHKMHMQT 155 (251)
Q Consensus 78 ~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q--~at~Ea~I~qL~~dLaahk~hid~ 155 (251)
++--+.-++.|+.+.|+.+...+.+.. .++.-.-.++..|.++..++...... -++++--.+.|.+++...+..+..
T Consensus 29 ~~~~l~k~~~e~e~~~~~~~~~~~e~e-~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~ 107 (239)
T COG1579 29 IRKALKKAKAELEALNKALEALEIELE-DLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINS 107 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 333445566777777777777666543 34555555566666666666554433 356666777788888888888887
Q ss_pred HHhhhhhHHHhh
Q 025508 156 LAKKLDQVKFDV 167 (251)
Q Consensus 156 L~~~LeqV~~ev 167 (251)
|..-|..|..+.
T Consensus 108 le~el~~l~~~~ 119 (239)
T COG1579 108 LEDELAELMEEI 119 (239)
T ss_pred HHHHHHHHHHHH
Confidence 777777665543
No 76
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=76.51 E-value=58 Score=29.36 Aligned_cols=64 Identities=14% Similarity=0.248 Sum_probs=52.2
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhh
Q 025508 87 EELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLD 161 (251)
Q Consensus 87 EEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~Le 161 (251)
+.|+.+|.+ |..++..|...+..|.++|+.......+-+..+.|-..+....-.=.|-|.++.+
T Consensus 143 ekL~~ANee-----------i~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 143 EKLEKANEE-----------IAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELISKMG 206 (207)
T ss_pred HHHHHHHHH-----------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566777754 6778888899999999999999999999999999988888777777777776654
No 77
>PRK02793 phi X174 lysis protein; Provisional
Probab=76.21 E-value=15 Score=27.69 Aligned_cols=48 Identities=27% Similarity=0.334 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHH
Q 025508 118 ARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKF 165 (251)
Q Consensus 118 i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~ 165 (251)
...+|++|-.+....|--|.+|..|..-+++.-..|+.|...+..+..
T Consensus 3 ~~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~ 50 (72)
T PRK02793 3 DSSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTE 50 (72)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777888888877777777777666666555543
No 78
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=76.12 E-value=33 Score=26.30 Aligned_cols=64 Identities=14% Similarity=0.286 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhh
Q 025508 99 KEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQ 162 (251)
Q Consensus 99 kE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~Leq 162 (251)
.|.....|++.|+.+|...-.+.+.-...+.+..+.-..--..|....+..--.++.|+..+++
T Consensus 4 LE~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~r 67 (70)
T PF04899_consen 4 LEKQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLER 67 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677889999999999999999999999888877665544445555555555555555555544
No 79
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=75.35 E-value=54 Score=35.11 Aligned_cols=149 Identities=22% Similarity=0.365 Sum_probs=84.1
Q ss_pred hhhhHhhhHHHHHHHhh-hhhhhhhHHHHHHHHHHHhHHHHHhHH------HHHHHHHHHHHH--hhhh-HHH-------
Q 025508 76 LERKAKCQSLKEELKRV-NDEHLSKEYELRKVIDSIKQDYAAKAR------DFEDQIRSLMLE--KATN-EAT------- 138 (251)
Q Consensus 76 le~rtk~qsLkEEL~r~-n~e~lskE~Eh~raie~Lk~~~~~~i~------~LE~qi~~~~~q--~at~-Ea~------- 138 (251)
++.--+...||+|+-++ |+...-++--..-.||.||++++..+- .|.+++-.+-.+ +|.. +-.
T Consensus 432 ~~Le~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~e 511 (762)
T PLN03229 432 RELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKANSQDQLMHPVLME 511 (762)
T ss_pred ccHHHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccccccHHHHH
Confidence 34445677888888888 777778888889999999999987653 467666554422 2211 101
Q ss_pred -HHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHH----H-----HHHHhHHHHHHHHH------HHHH
Q 025508 139 -ISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLL----L-----EQEEKNELNKRVQD------LEKE 202 (251)
Q Consensus 139 -I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~----~-----EqEeKn~l~~kLq~------~ekE 202 (251)
|..|++ -.++||..+-..-..+|+.| -||+... . .-.=+.+|++|+.. .-.+
T Consensus 512 K~~kLk~----------Efnkkl~ea~n~p~lk~Kle--~Lk~~~~~~~~s~g~~~a~~Lk~ei~kki~e~~~~~~~kek 579 (762)
T PLN03229 512 KIEKLKD----------EFNKRLSRAPNYLSLKYKLD--MLNEFSRAKALSEKKSKAEKLKAEINKKFKEVMDRPEIKEK 579 (762)
T ss_pred HHHHHHH----------HHHHhhhcccccHHHHHHHH--HHHHHHHhhhhcccchhhhhhhHHHHHHHHHhcccHHHHHH
Confidence 233333 34556666666566666654 2454443 1 11225566666665 3222
Q ss_pred HHHhhhhHHHhhhhhhhh-hhHHHHHHHHHhhhhhhH
Q 025508 203 LLMNRTKMAEHNRDLTSV-RSVETLKLKIMKLRKENE 238 (251)
Q Consensus 203 lli~ktK~~eqqrD~tS~-~hVetLKqKiMKLRKENE 238 (251)
.-.-+..... -+.+|. ---+-||.||.++++|.+
T Consensus 580 ~ea~~aev~~--~g~s~~~~~~~~lkeki~~~~~Ei~ 614 (762)
T PLN03229 580 MEALKAEVAS--SGASSGDELDDDLKEKVEKMKKEIE 614 (762)
T ss_pred HHHHHHHHHh--cCccccCCCCHHHHHHHHHHHHHHH
Confidence 2222221111 112221 233459999999999765
No 80
>PF13166 AAA_13: AAA domain
Probab=74.85 E-value=94 Score=30.95 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=15.1
Q ss_pred ChhhHHHHHhhHHHHHHHHHHHHH
Q 025508 5 SDDGMESLLSDFDQIYEDFKRAIS 28 (251)
Q Consensus 5 sDEemesLL~~Fd~i~e~fk~g~~ 28 (251)
+++-++.|-+-|+..|+.+...+.
T Consensus 267 ~~~~~~~l~~~f~~~~~~~~~~l~ 290 (712)
T PF13166_consen 267 SEERKERLEKYFDEEYEKLIEELE 290 (712)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666667777766555544
No 81
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=74.66 E-value=76 Score=29.80 Aligned_cols=211 Identities=21% Similarity=0.363 Sum_probs=108.6
Q ss_pred CChhhHHHHHhhHHHHHHHHHHH--------------HHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHH
Q 025508 4 TSDDGMESLLSDFDQIYEDFKRA--------------ISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESL 69 (251)
Q Consensus 4 tsDEemesLL~~Fd~i~e~fk~g--------------~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL 69 (251)
|.++-++.|..-+..+..+.+.. .-|...+++.++.=..-|.-||+.|..|.+.|-.|+- |+.
T Consensus 19 ~~eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lke---E~~ 95 (309)
T PF09728_consen 19 SPEEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKE---ESK 95 (309)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 34666676666666665555443 2345666777777777889999999999999976662 222
Q ss_pred HHHHHH----hhhhHhhhHHHHHHH-------hhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHH
Q 025508 70 ENLADQ----LERKAKCQSLKEELK-------RVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEAT 138 (251)
Q Consensus 70 ~~~a~q----le~rtk~qsLkEEL~-------r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~ 138 (251)
...... -+..++|+..-.++. ..|..+..--.+.+.-+..+-..|+..-.-++..++.--.+.--.+|=
T Consensus 96 ~~~~eee~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AK 175 (309)
T PF09728_consen 96 RRAREEEEKRKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAK 175 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 211111 112223333322222 222222222233344455555555555555555555544444444444
Q ss_pred HHHHHHHHHHhhHHHHHHHh-------hhhhHH-Hhhhhh-----hhhhhhhh-------HHHHHHHHHHhHHHHHHHHH
Q 025508 139 ISNLHQDLAAHKMHMQTLAK-------KLDQVK-FDVEMK-----YNLEIQDL-------KDCLLLEQEEKNELNKRVQD 198 (251)
Q Consensus 139 I~qL~~dLaahk~hid~L~~-------~LeqV~-~eve~k-----Y~~EIqdL-------kD~L~~EqEeKn~l~~kLq~ 198 (251)
+.+......+-....+.+.. ...... .+++.+ |-.-..++ .++...=..|-..|++++..
T Consensus 176 l~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kk 255 (309)
T PF09728_consen 176 LEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKK 255 (309)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433333333333 111111 111111 22111222 23333444666789999999
Q ss_pred HHHHHHHhhhhHHHhhhhh
Q 025508 199 LEKELLMNRTKMAEHNRDL 217 (251)
Q Consensus 199 ~ekElli~ktK~~eqqrD~ 217 (251)
+|+|-...|.|-..-..-+
T Consensus 256 lEKE~~~~k~k~e~~n~~l 274 (309)
T PF09728_consen 256 LEKENQTWKSKWEKSNKAL 274 (309)
T ss_pred HHHHHHHHHHHHHHHhHHH
Confidence 9999999999887655544
No 82
>PRK04325 hypothetical protein; Provisional
Probab=74.13 E-value=20 Score=27.19 Aligned_cols=48 Identities=23% Similarity=0.338 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHH
Q 025508 118 ARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKF 165 (251)
Q Consensus 118 i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~ 165 (251)
.+.++.+|-.+....|--|.||..|..-+++.-..|+.|...|..+..
T Consensus 4 ~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~ 51 (74)
T PRK04325 4 VQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQ 51 (74)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777788888877777776666666655555443
No 83
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=73.91 E-value=78 Score=29.60 Aligned_cols=20 Identities=5% Similarity=0.222 Sum_probs=13.6
Q ss_pred hhhHhhhHHHHHHHhhhhhh
Q 025508 77 ERKAKCQSLKEELKRVNDEH 96 (251)
Q Consensus 77 e~rtk~qsLkEEL~r~n~e~ 96 (251)
+.|++..+++.++.-+..++
T Consensus 279 ~~hP~v~~l~~~i~~l~~~l 298 (444)
T TIGR03017 279 PNHPQYKRAQAEINSLKSQL 298 (444)
T ss_pred CCCcHHHHHHHHHHHHHHHH
Confidence 36777777777776666554
No 84
>PRK02119 hypothetical protein; Provisional
Probab=73.63 E-value=22 Score=27.01 Aligned_cols=48 Identities=19% Similarity=0.322 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHH
Q 025508 118 ARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKF 165 (251)
Q Consensus 118 i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~ 165 (251)
+..+|++|-.+....|--|.+|..|..-+++....|+.|...|..+..
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~ 51 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMAN 51 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777777777777777776666666666555543
No 85
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=73.13 E-value=21 Score=30.43 Aligned_cols=58 Identities=19% Similarity=0.334 Sum_probs=37.0
Q ss_pred hhhHHHHHHHhhhhhhhhhHH------HHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHH
Q 025508 81 KCQSLKEELKRVNDEHLSKEY------ELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEAT 138 (251)
Q Consensus 81 k~qsLkEEL~r~n~e~lskE~------Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~ 138 (251)
.+-+++.+|+-++.++..... +.+..|+.|+.+|.+.-.+.++++...-..-|.+.|.
T Consensus 28 e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ai~~al 91 (155)
T PF06810_consen 28 ERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKDSAIKSAL 91 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555544443 6677788888888777777777777666655555443
No 86
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=73.04 E-value=1.6e+02 Score=32.85 Aligned_cols=190 Identities=20% Similarity=0.280 Sum_probs=96.7
Q ss_pred CCCCChhhHHHHHhhHHHHHHHHHHHH----HHHHHHHhhhhhHHHhHHHHHHHhhh-----------------------
Q 025508 1 MAATSDDGMESLLSDFDQIYEDFKRAI----SEVQLLRSSCNAETKRREALEITCNT----------------------- 53 (251)
Q Consensus 1 MaatsDEemesLL~~Fd~i~e~fk~g~----~Eiq~Lrs~~~aE~k~ReALE~tc~~----------------------- 53 (251)
|=||-=++|...++.|...-+.++.-| .+|-.+...|..+-.++.+++.+=.-
T Consensus 204 mkaT~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql 283 (1074)
T KOG0250|consen 204 MKATQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQL 283 (1074)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666788888888888877776544 45677777888877777766543211
Q ss_pred ------hHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHH
Q 025508 54 ------LKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRS 127 (251)
Q Consensus 54 ------Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~ 127 (251)
.+.--++..++..++=...+.+=++|.++-+....++...++...+-.|+..+.+.++ ++.-..++++.+++.
T Consensus 284 ~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~-~~~re~~~~~~~~~~ 362 (1074)
T KOG0250|consen 284 NNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLD-DLRREVNDLKEEIRE 362 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 1111122223333333333334445555555555666666666666666665555543 222333444444444
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhhHHH-HH-------HHhhhhhHHHhhh------hhhhhhhhhhHHHHHHHHHHhHH
Q 025508 128 LMLEKATNEATISNLHQDLAAHKMHM-QT-------LAKKLDQVKFDVE------MKYNLEIQDLKDCLLLEQEEKNE 191 (251)
Q Consensus 128 ~~~q~at~Ea~I~qL~~dLaahk~hi-d~-------L~~~LeqV~~eve------~kY~~EIqdLkD~L~~EqEeKn~ 191 (251)
+.-.-...-..++.|+..++..+... .- +.+++++...+|+ ..-..++++++-.+-.+++++-.
T Consensus 363 ~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~ 440 (1074)
T KOG0250|consen 363 IENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEH 440 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 44333333334444444444433333 33 3333444433333 33444555555555566665533
No 87
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=72.37 E-value=1.4e+02 Score=31.90 Aligned_cols=175 Identities=21% Similarity=0.269 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhh----------------
Q 025508 19 IYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAKC---------------- 82 (251)
Q Consensus 19 i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~---------------- 82 (251)
+.++...+++.|.-+..-+ . +++ ..|.+|-.++..|.+.+.|+-.-|-.=+..-..+
T Consensus 500 ~s~eL~~avskIsEfv~~L----e-keV--h~C~DLLsgkadLE~fieE~s~tLdwIls~~~SLqDv~s~~sEIK~~f~~ 572 (769)
T PF05911_consen 500 ISQELNVAVSKISEFVLVL----E-KEV--HVCQDLLSGKADLERFIEEFSLTLDWILSNCFSLQDVSSMRSEIKKNFDG 572 (769)
T ss_pred hcccHHHHHHhHHHHHHHH----H-HHH--HHHHHHhcchhHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHhhhh
Confidence 6667777777772222221 1 122 5778877778888777776544433322222222
Q ss_pred -------------------hHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 025508 83 -------------------QSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLH 143 (251)
Q Consensus 83 -------------------qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~ 143 (251)
..|.++|+.+..+-...|-..-+.-..++. ....+.++|..|+.+..+.++-...-..+.
T Consensus 573 ~ss~e~E~~~~dea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~-~~~qL~E~E~~L~eLq~eL~~~keS~s~~E 651 (769)
T PF05911_consen 573 DSSSEAEINSEDEADTSEKKELEEELEKLESEKEELEMELASCQDQLES-LKNQLKESEQKLEELQSELESAKESNSLAE 651 (769)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234444554444444444444333333322 223444555555555555554444444444
Q ss_pred HHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHH
Q 025508 144 QDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKE 202 (251)
Q Consensus 144 ~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekE 202 (251)
-.|.+.+.....|..++.-+.++++. -+..|.-|...|.-|..-=.++-.|-+++|-+
T Consensus 652 ~ql~~~~e~~e~le~~~~~~e~E~~~-l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~e 709 (769)
T PF05911_consen 652 TQLKAMKESYESLETRLKDLEAEAEE-LQSKISSLEEELEKERALSEELEAKCRELEEE 709 (769)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence 45555666666666666666566554 34445555555554444444555555555555
No 88
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=72.29 E-value=1.2 Score=45.11 Aligned_cols=67 Identities=15% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHH
Q 025508 107 IDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDC 181 (251)
Q Consensus 107 ie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~ 181 (251)
.+.+..+....+..|.++++.+..+....+.-+..|..++.+.+..++.+..++ ..+...|+.|...
T Consensus 155 ~~~~~~e~~~~~~~l~~~~~~l~~~~~~~e~~~~~l~~e~~~l~~~le~~~~~~--------~e~e~~~~~L~~~ 221 (722)
T PF05557_consen 155 KEQLLEEAREEISSLKNELSELERQAENAESQIQSLESELEELKEQLEELQSEL--------QEAEQQLQELQAS 221 (722)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Confidence 344455555666677777777766655666666666666666666666555555 4455566666543
No 89
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=72.06 E-value=22 Score=26.41 Aligned_cols=46 Identities=22% Similarity=0.374 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHh
Q 025508 121 FEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFD 166 (251)
Q Consensus 121 LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~e 166 (251)
+|.+|-.+....|--|.+|.+|..-+++.-..|+.|...+..+...
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~r 47 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRER 47 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445556666666666666665555555555554443
No 90
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=71.89 E-value=53 Score=26.74 Aligned_cols=107 Identities=21% Similarity=0.267 Sum_probs=58.2
Q ss_pred HhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHh----hhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHh
Q 025508 42 KRREALEITCNTLKKENERARNSYTESLENLADQLERKAK----CQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAK 117 (251)
Q Consensus 42 k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk----~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~ 117 (251)
..-...+.....++.|.+...+.+.+.=.|.-.+|--|+. ...|++++..+..++.. |+..-+.-
T Consensus 17 ~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~-----------l~~~~~~a 85 (132)
T PF07926_consen 17 EQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINE-----------LKAEAESA 85 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH
Confidence 3445666777788888888888888888887777777764 44555555554444433 33333333
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhh
Q 025508 118 ARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKK 159 (251)
Q Consensus 118 i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~ 159 (251)
...|+..-.+...++..-+.-|..+..-+.....+=..|-+.
T Consensus 86 ~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Q 127 (132)
T PF07926_consen 86 KAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQ 127 (132)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444444443333333
No 91
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=71.81 E-value=24 Score=30.00 Aligned_cols=39 Identities=31% Similarity=0.336 Sum_probs=31.0
Q ss_pred HHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHH
Q 025508 164 KFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKE 202 (251)
Q Consensus 164 ~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekE 202 (251)
..+...++..||++|+..|.--+.+..-|.++.+++++|
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455667788888888888888888888888888888776
No 92
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=71.10 E-value=29 Score=25.77 Aligned_cols=52 Identities=6% Similarity=0.114 Sum_probs=40.0
Q ss_pred HHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHh
Q 025508 115 AAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFD 166 (251)
Q Consensus 115 ~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~e 166 (251)
+..|.+||.+|.....-...=..+|.+...+|.....++..|..||..+...
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~ 54 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELEDP 54 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5678899999998888777778888899999999999999999999988744
No 93
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=70.48 E-value=1.8e+02 Score=32.37 Aligned_cols=88 Identities=26% Similarity=0.305 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhhhhh----------------HHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhH----hhh
Q 025508 24 KRAISEVQLLRSSCNA----------------ETKRREALEITCNTLKKENERARNSYTESLENLADQLERKA----KCQ 83 (251)
Q Consensus 24 k~g~~Eiq~Lrs~~~a----------------E~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rt----k~q 83 (251)
||=..||.-|+....| +...+.+....|..|+.+.+-+++..+.+=..+.++++-.. +-.
T Consensus 407 Kd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~ 486 (1041)
T KOG0243|consen 407 KDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKE 486 (1041)
T ss_pred HHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4456788888876543 55568889999999999999888888877777776665433 334
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHh
Q 025508 84 SLKEELKRVNDEHLSKEYELRKVIDSIK 111 (251)
Q Consensus 84 sLkEEL~r~n~e~lskE~Eh~raie~Lk 111 (251)
-++..|...+.++.+++.++..+...|+
T Consensus 487 ~~k~~L~~~~~el~~~~ee~~~~~~~l~ 514 (1041)
T KOG0243|consen 487 KLKSKLQNKNKELESLKEELQQAKATLK 514 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666677777777766666543
No 94
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=70.38 E-value=1.2e+02 Score=30.31 Aligned_cols=202 Identities=19% Similarity=0.193 Sum_probs=109.6
Q ss_pred HHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhh-hHhhhHH------------HHHHHhhhhhhhh----hHHHHHHHHH
Q 025508 46 ALEITCNTLKKENERARNSYTESLENLADQLER-KAKCQSL------------KEELKRVNDEHLS----KEYELRKVID 108 (251)
Q Consensus 46 ALE~tc~~Lk~dneRLrklytEsL~~~a~qle~-rtk~qsL------------kEEL~r~n~e~ls----kE~Eh~raie 108 (251)
.|+.....|...-+++-.+|.+.=..|-+||+- +.-|+-| -.+++.+.+++.. ...-.=..++
T Consensus 202 ~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~ 281 (569)
T PRK04778 202 QLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAE 281 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 455677788888888888888887778777642 2333333 3333333333333 2222222222
Q ss_pred HHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhh---------hhhhhhhhhhH
Q 025508 109 SIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVE---------MKYNLEIQDLK 179 (251)
Q Consensus 109 ~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve---------~kY~~EIqdLk 179 (251)
..-..-...|..|-+.+..-..-+..-+--+..+...|...+...+.|...++.|...-. -.+..+|..|.
T Consensus 282 ~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le 361 (569)
T PRK04778 282 EKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLE 361 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHH
Confidence 233334444555555555444444455555555666666666666666666666654421 23444555555
Q ss_pred HHHHHHHH-------HhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhhhhHHH-HHHHHHhhhhhhHHHHhhhhhc
Q 025508 180 DCLLLEQE-------EKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSVET-LKLKIMKLRKENEILKRKLNSS 247 (251)
Q Consensus 180 D~L~~EqE-------eKn~l~~kLq~~ekElli~ktK~~eqqrD~tS~~hVet-LKqKiMKLRKENE~LKR~l~~s 247 (251)
..+..-.+ .-..+...+..+.+.+--....+.+-...+.+-+..+. .+.++-++++....+||.+..+
T Consensus 362 ~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~ 437 (569)
T PRK04778 362 KQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKS 437 (569)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44441111 11234445555555554555555555566666666665 6777788888777788776654
No 95
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=69.82 E-value=1.6e+02 Score=31.57 Aligned_cols=58 Identities=21% Similarity=0.299 Sum_probs=33.3
Q ss_pred hhHHHhhhh-hhhhhhhhhHHHHHHHHHHhHHHHHH-------HHHHHHHHHHhhhhHHHhhhhhh
Q 025508 161 DQVKFDVEM-KYNLEIQDLKDCLLLEQEEKNELNKR-------VQDLEKELLMNRTKMAEHNRDLT 218 (251)
Q Consensus 161 eqV~~eve~-kY~~EIqdLkD~L~~EqEeKn~l~~k-------Lq~~ekElli~ktK~~eqqrD~t 218 (251)
++|-.++++ -+..|=+.|.+-+.-=+++++.|+-. ++++..=|-|--..+..+.+.+.
T Consensus 229 eq~p~~~~~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvqp~d 294 (739)
T PF07111_consen 229 EQVPPEVHSQAWEPEREELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCRKVQPSD 294 (739)
T ss_pred hhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 334344443 24556677777777777888877654 44555555555555666655433
No 96
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=69.46 E-value=1.3e+02 Score=30.10 Aligned_cols=185 Identities=22% Similarity=0.281 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHH-HHhhhhHhhhHHHHHHHhhhhhhhhhHHH
Q 025508 24 KRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLA-DQLERKAKCQSLKEELKRVNDEHLSKEYE 102 (251)
Q Consensus 24 k~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a-~qle~rtk~qsLkEEL~r~n~e~lskE~E 102 (251)
..|+..+..--+....-.++=+-|-.-+..||...+...-..-+.-.... -.+.+-..+.+++.+|+.+..++.....+
T Consensus 154 ~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e 233 (522)
T PF05701_consen 154 NAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEE 233 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555444444444555555555555555555544322222221111 01233345556666666666555555554
Q ss_pred HHHHHHHHhHHHH---HhHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhh
Q 025508 103 LRKVIDSIKQDYA---AKARDFEDQIRSLMLEKATNE----ATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEI 175 (251)
Q Consensus 103 h~raie~Lk~~~~---~~i~~LE~qi~~~~~q~at~E----a~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EI 175 (251)
. -....|+.+.. ..+..|..++..+.......+ ..+..+...++.-+.-++.....|+.+..++ +..+..+
T Consensus 234 ~-~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~-~~L~~~v 311 (522)
T PF05701_consen 234 L-EAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEA-SSLRASV 311 (522)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 4 33333333332 445555555555444332221 1122222223333333333333343333332 2345555
Q ss_pred hhhHHHHHHHHHHhHHHHHHH-------HHHHHHHHHhhhhH
Q 025508 176 QDLKDCLLLEQEEKNELNKRV-------QDLEKELLMNRTKM 210 (251)
Q Consensus 176 qdLkD~L~~EqEeKn~l~~kL-------q~~ekElli~ktK~ 210 (251)
..|++-|.-+..+.+.+..+. ++++-+|...|.++
T Consensus 312 esL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eL 353 (522)
T PF05701_consen 312 ESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSEL 353 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Confidence 666666666666666555543 45556666665555
No 97
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=68.62 E-value=1.1e+02 Score=29.32 Aligned_cols=119 Identities=24% Similarity=0.308 Sum_probs=66.6
Q ss_pred HHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHH---HHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHH
Q 025508 45 EALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLK---EELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDF 121 (251)
Q Consensus 45 eALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLk---EEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~L 121 (251)
++|...+.+|..+|.+||.-.+ .|..-+.+.+-+ ..+=+. .+|.-+|.++....+|.-+-.+... .-
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~-~L~~et~~~Eek-EqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~--------rQ 232 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEAS-QLKTETDTYEEK-EQQLVLDCVKQLSEANQQIASLSEELARKTEENR--------RQ 232 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhHHHhhccHH-HHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHH--------HH
Confidence 7899999999999999986433 233333344433 222222 5666677777766666655554433 23
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHH
Q 025508 122 EDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDC 181 (251)
Q Consensus 122 E~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~ 181 (251)
...|.+++.|.+.-+....++-.|=.-...|..+ ..+.+..-..|+.||+|.
T Consensus 233 QEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~--------ske~Q~~L~aEL~elqdk 284 (306)
T PF04849_consen 233 QEEITSLLSQIVDLQQRCKQLAAENEELQQHLQA--------SKESQRQLQAELQELQDK 284 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 3455566655555555555544443333333332 234444455567777654
No 98
>PRK00295 hypothetical protein; Provisional
Probab=68.47 E-value=31 Score=25.77 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHH
Q 025508 121 FEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKF 165 (251)
Q Consensus 121 LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~ 165 (251)
+|++|-.+....|--|.||..|..-+++.-..|+.|...+..+..
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~ 47 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIK 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555556666777777776666666666666655555443
No 99
>PRK02793 phi X174 lysis protein; Provisional
Probab=68.05 E-value=33 Score=25.90 Aligned_cols=52 Identities=15% Similarity=0.236 Sum_probs=43.0
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHH
Q 025508 114 YAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKF 165 (251)
Q Consensus 114 ~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~ 165 (251)
.+..|.+||-+|.....-...=..+|.+..++|.....++..|..+|..+..
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4567888999988877666666678888899999999999999999988754
No 100
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=67.26 E-value=86 Score=27.37 Aligned_cols=45 Identities=24% Similarity=0.286 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHH
Q 025508 136 EATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKD 180 (251)
Q Consensus 136 Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD 180 (251)
+..+..|...++..+.+.+.+.++.+.......-+|..||+.||.
T Consensus 133 ~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~ 177 (189)
T PF10211_consen 133 EEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKK 177 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777777777777777777777888888888775
No 101
>PRK11546 zraP zinc resistance protein; Provisional
Probab=66.81 E-value=32 Score=29.64 Aligned_cols=57 Identities=14% Similarity=0.314 Sum_probs=39.1
Q ss_pred HHHHHHHHHhHHHHHhHHHHHHH-------HHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHh
Q 025508 102 ELRKVIDSIKQDYAAKARDFEDQ-------IRSLMLEKATNEATISNLHQDLAAHKMHMQTLAK 158 (251)
Q Consensus 102 Eh~raie~Lk~~~~~~i~~LE~q-------i~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~ 158 (251)
|-..+++.+..+|..+...|-.+ +..++...+++++.|..|.+|+++.+..++.+.-
T Consensus 47 EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~ 110 (143)
T PRK11546 47 EQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRV 110 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555433 4456777899999999999999998887765543
No 102
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=66.60 E-value=57 Score=25.10 Aligned_cols=68 Identities=22% Similarity=0.313 Sum_probs=42.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHH
Q 025508 11 SLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELK 90 (251)
Q Consensus 11 sLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~ 90 (251)
+.+..|-.+|+.++..+.+++.||+.-|.=++ .+..+++.. ..+..|+++.+
T Consensus 26 ~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk-------~I~~~~~~~---------------------~~~~~l~~e~~ 77 (108)
T PF02403_consen 26 EDVDEIIELDQERRELQQELEELRAERNELSK-------EIGKLKKAG---------------------EDAEELKAEVK 77 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHCHTT---------------------CCTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHhhCc---------------------ccHHHHHHHHH
Confidence 45666677788888888888888876655443 233333322 45666777777
Q ss_pred hhhhhhhhhHHHHHHH
Q 025508 91 RVNDEHLSKEYELRKV 106 (251)
Q Consensus 91 r~n~e~lskE~Eh~ra 106 (251)
.+++++...|.+....
T Consensus 78 ~lk~~i~~le~~~~~~ 93 (108)
T PF02403_consen 78 ELKEEIKELEEQLKEL 93 (108)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7776666666554443
No 103
>PRK00295 hypothetical protein; Provisional
Probab=66.42 E-value=40 Score=25.20 Aligned_cols=49 Identities=8% Similarity=0.125 Sum_probs=39.6
Q ss_pred HhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHH
Q 025508 116 AKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVK 164 (251)
Q Consensus 116 ~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~ 164 (251)
..|.+||-+|.....-.-.=..+|.+..++|.....++..|..||..+.
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3478888888777666666667888889999999999999999998765
No 104
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=66.38 E-value=24 Score=30.97 Aligned_cols=76 Identities=17% Similarity=0.209 Sum_probs=54.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHh--hhhh-HHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHH
Q 025508 13 LSDFDQIYEDFKRAISEVQLLRS--SCNA-ETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEEL 89 (251)
Q Consensus 13 L~~Fd~i~e~fk~g~~Eiq~Lrs--~~~a-E~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL 89 (251)
..||+.+|+++-+.+.=+++... .+.. ....|-+.-..|..|.++.++|++--. .=.+|..+++-.++.+.++.||
T Consensus 143 ~~~l~~lY~~l~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~i~~L~kei~~L~~~~~-kEkq~nrkveln~elk~l~~eL 221 (221)
T PF14335_consen 143 GLNLDALYESLVNQIIALNAAPNTGEFEKTSLWERIERLEQIEKLEKEIAKLKKKIK-KEKQFNRKVELNTELKKLKKEL 221 (221)
T ss_pred cccHHHHHHHHHHHHhcchhhhhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHhcC
Confidence 56899999999988887777663 1111 445566666778888999988875433 2247888888888888887764
No 105
>PRK00736 hypothetical protein; Provisional
Probab=66.19 E-value=37 Score=25.40 Aligned_cols=46 Identities=28% Similarity=0.376 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHh
Q 025508 121 FEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFD 166 (251)
Q Consensus 121 LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~e 166 (251)
+|++|-.+....|--|.+|..|..-+++.-..|+.|...|..+...
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~r 48 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTER 48 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555666667777777777777776676666666555443
No 106
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=66.10 E-value=49 Score=25.08 Aligned_cols=51 Identities=16% Similarity=0.270 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhh
Q 025508 117 KARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDV 167 (251)
Q Consensus 117 ~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~ev 167 (251)
.|+.|=.--..+-.+......+|..|+..+......|..|..+++.+..++
T Consensus 13 ~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~ 63 (74)
T PF12329_consen 13 QIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKEL 63 (74)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455566667777777777777777777777777665544
No 107
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=65.96 E-value=66 Score=25.61 Aligned_cols=64 Identities=22% Similarity=0.435 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhh-------hHHhHHHHH---HhHHHHHHHHHHHhh
Q 025508 14 SDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNT-------LKKENERAR---NSYTESLENLADQLE 77 (251)
Q Consensus 14 ~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~-------Lk~dneRLr---klytEsL~~~a~qle 77 (251)
.-|+++....+.|+-.|..|+--..-.-.+-.+|...+.. |.++|+.|+ ..+.|.|..+...|+
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~ 77 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3489999999999988888876544333332233222222 444454443 345566666655554
No 108
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=65.86 E-value=1.1e+02 Score=27.97 Aligned_cols=18 Identities=17% Similarity=0.649 Sum_probs=12.0
Q ss_pred hHHHHHhhHHHHHHHHHH
Q 025508 8 GMESLLSDFDQIYEDFKR 25 (251)
Q Consensus 8 emesLL~~Fd~i~e~fk~ 25 (251)
+...++..|+.|...|..
T Consensus 149 g~~~~~~~~~~~~~~Y~~ 166 (297)
T PF02841_consen 149 GYQLFLKELDELEKEYEQ 166 (297)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhh
Confidence 466677777777776643
No 109
>PRK00846 hypothetical protein; Provisional
Probab=65.69 E-value=38 Score=26.44 Aligned_cols=48 Identities=17% Similarity=0.219 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHh
Q 025508 119 RDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFD 166 (251)
Q Consensus 119 ~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~e 166 (251)
..++++|-.+....|--|.||..|..-+++.-.-|+.|...+..++..
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~r 56 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLED 56 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777778888888888877777777777666655543
No 110
>PRK02119 hypothetical protein; Provisional
Probab=65.46 E-value=40 Score=25.61 Aligned_cols=53 Identities=9% Similarity=0.084 Sum_probs=43.7
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHh
Q 025508 114 YAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFD 166 (251)
Q Consensus 114 ~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~e 166 (251)
.+..|.+||-+|.....-...=..+|.+-.++|.....++..|..+|..+...
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~~~ 59 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQPS 59 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 45678889988888777766667788888999999999999999999887643
No 111
>PRK04406 hypothetical protein; Provisional
Probab=65.40 E-value=44 Score=25.58 Aligned_cols=53 Identities=11% Similarity=0.092 Sum_probs=43.6
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHH
Q 025508 113 DYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKF 165 (251)
Q Consensus 113 ~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~ 165 (251)
..+..|.+||-+|.....-.-.=..+|.+..++|.....++..|..||..+..
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~ 60 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMDS 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 35578889999998877666666678888899999999999999999987653
No 112
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=65.34 E-value=1.7e+02 Score=30.11 Aligned_cols=52 Identities=17% Similarity=0.378 Sum_probs=31.9
Q ss_pred HHhhHHHHHHHhhhhhHHHh---hhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 025508 147 AAHKMHMQTLAKKLDQVKFD---VEMKYNLEIQDLKDCLLLEQEEKNELNKRVQD 198 (251)
Q Consensus 147 aahk~hid~L~~~LeqV~~e---ve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~ 198 (251)
++.+.|||.|.+-.++.+.. ++-.|.-+++.++..=--=-||.-.+++||++
T Consensus 249 ~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~ 303 (552)
T KOG2129|consen 249 AAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLIN 303 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 36688888888877777654 45566666665553322223455556666654
No 113
>PRK04325 hypothetical protein; Provisional
Probab=65.03 E-value=42 Score=25.46 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=40.4
Q ss_pred HhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHh
Q 025508 116 AKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFD 166 (251)
Q Consensus 116 ~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~e 166 (251)
..|.+||.+|.....-...=..+|.+-.++|.....++..|..||..+...
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~~~ 59 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDANPD 59 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 457888888877666555556778888999999999999999999887644
No 114
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=64.71 E-value=1.4e+02 Score=28.93 Aligned_cols=147 Identities=25% Similarity=0.322 Sum_probs=71.5
Q ss_pred HHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhh-----hhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHH
Q 025508 45 EALEITCNTLKKENERARNSYTESLENLADQLE-----RKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKAR 119 (251)
Q Consensus 45 eALE~tc~~Lk~dneRLrklytEsL~~~a~qle-----~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~ 119 (251)
+-||.....|++|+-- |-..-|||...-+.=+ -++++-.||-|.-.+-+.. +...++-.-|-++...+
T Consensus 21 qelE~QldkLkKE~qQ-rQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c----~~lek~rqKlshdlq~K-- 93 (307)
T PF10481_consen 21 QELEQQLDKLKKERQQ-RQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESC----ENLEKTRQKLSHDLQVK-- 93 (307)
T ss_pred HHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHH----HHHHHHHHHhhHHHhhh--
Confidence 3455555555555432 3345566654443322 1233344444433333322 22333333444443322
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhh------------hHHHh---hhhhhh--hhhhhhHHHH
Q 025508 120 DFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLD------------QVKFD---VEMKYN--LEIQDLKDCL 182 (251)
Q Consensus 120 ~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~Le------------qV~~e---ve~kY~--~EIqdLkD~L 182 (251)
|.+|.++..|.++--..|..|.++|.-+|+.+.-.-.-.. |-.|- ..+.|+ .-..||+...
T Consensus 94 --e~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~sk~e~L~eky 171 (307)
T PF10481_consen 94 --ESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYSDSKYEELQEKY 171 (307)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhhhhhhhHHHHHHHH
Confidence 3344444444444444556666666666655543221111 00110 123344 4478999999
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 025508 183 LLEQEEKNELNKRVQDLE 200 (251)
Q Consensus 183 ~~EqEeKn~l~~kLq~~e 200 (251)
.-|-||+..|.-.+.-++
T Consensus 172 nkeveerkrle~e~k~lq 189 (307)
T PF10481_consen 172 NKEVEERKRLEAEVKALQ 189 (307)
T ss_pred HHHHHHHhhHHHHHHHHh
Confidence 999999988777776665
No 115
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=64.53 E-value=19 Score=30.49 Aligned_cols=60 Identities=22% Similarity=0.326 Sum_probs=46.1
Q ss_pred HHHHHhHHHHHh-------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHH
Q 025508 106 VIDSIKQDYAAK-------ARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKF 165 (251)
Q Consensus 106 aie~Lk~~~~~~-------i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~ 165 (251)
.+.-||+.|--+ ...+.+.|.....-..|+|++++.|+.++.+-.+.|..|..+|+....
T Consensus 56 ~Ls~LK~~y~~~~~~~~~~~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~ 122 (131)
T PF04859_consen 56 RLSELKRRYRKKQSDPSPQVARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNR 122 (131)
T ss_pred HHHHHHHHHHcCCCCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556665543 345778888888888999999999999999999999999988876543
No 116
>PRK10869 recombination and repair protein; Provisional
Probab=64.28 E-value=1.6e+02 Score=29.53 Aligned_cols=61 Identities=15% Similarity=0.145 Sum_probs=31.6
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHH
Q 025508 6 DDGMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLE 70 (251)
Q Consensus 6 DEemesLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~ 70 (251)
|..+..++..+..+|-...++..++..+.........+=+.++.-...|. +|+|=|--++.
T Consensus 260 d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~----~L~rKyg~~~~ 320 (553)
T PRK10869 260 DSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQI----SLARKHHVSPE 320 (553)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH----HHHHHhCCCHH
Confidence 44444455555555555555555555555555554555555555444433 45555654433
No 117
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.95 E-value=2.4e+02 Score=31.29 Aligned_cols=77 Identities=23% Similarity=0.407 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHH---HHHhhhhHHHh
Q 025508 137 ATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKE---LLMNRTKMAEH 213 (251)
Q Consensus 137 a~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekE---lli~ktK~~eq 213 (251)
|--.||+++|.+.-..++.|..||--|+.++... +-+|..+.--.-+.--|...|.-+||.++.- |.+-|..+.+|
T Consensus 437 ak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~-kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~q 515 (1118)
T KOG1029|consen 437 AKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQ-KTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQ 515 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhheeccchH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4457999999999999999999999888777543 4566655544444444444444444444432 22334444444
Q ss_pred h
Q 025508 214 N 214 (251)
Q Consensus 214 q 214 (251)
.
T Consensus 516 l 516 (1118)
T KOG1029|consen 516 L 516 (1118)
T ss_pred H
Confidence 3
No 118
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=63.58 E-value=1.4e+02 Score=28.54 Aligned_cols=17 Identities=12% Similarity=0.345 Sum_probs=9.9
Q ss_pred hHhhhHHHHHHHhhhhh
Q 025508 79 KAKCQSLKEELKRVNDE 95 (251)
Q Consensus 79 rtk~qsLkEEL~r~n~e 95 (251)
|++...++.++..+..+
T Consensus 274 hP~v~~l~~qi~~l~~~ 290 (498)
T TIGR03007 274 HPDVIATKREIAQLEEQ 290 (498)
T ss_pred ChHHHHHHHHHHHHHHH
Confidence 56666666665555444
No 119
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=63.11 E-value=2.8e+02 Score=31.77 Aligned_cols=93 Identities=19% Similarity=0.224 Sum_probs=65.0
Q ss_pred hhHHHHHhhH-HHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHH----------HHhHHHHHHHH---
Q 025508 7 DGMESLLSDF-DQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERA----------RNSYTESLENL--- 72 (251)
Q Consensus 7 EemesLL~~F-d~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRL----------rklytEsL~~~--- 72 (251)
+++-++|..- -.++++++....+.+.+|-....=+.-+.+|+..+.+|+.+++++ ++.-.|..++.
T Consensus 587 ~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~ 666 (1317)
T KOG0612|consen 587 EDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKE 666 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444333 567788888888888888888888888888888888888877654 34444444433
Q ss_pred HHHhhhhHhhhHHHHHHHhhhhhhhhh
Q 025508 73 ADQLERKAKCQSLKEELKRVNDEHLSK 99 (251)
Q Consensus 73 a~qle~rtk~qsLkEEL~r~n~e~lsk 99 (251)
+-..+|..+-+++-.++++++.++...
T Consensus 667 ~~e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 667 ALEIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446778888888888888887766544
No 120
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=63.09 E-value=1.8e+02 Score=29.49 Aligned_cols=62 Identities=16% Similarity=0.244 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhhHHH-hhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHH
Q 025508 136 EATISNLHQDLAAHKMHMQTLAKKLDQVKF-DVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQ 197 (251)
Q Consensus 136 Ea~I~qL~~dLaahk~hid~L~~~LeqV~~-eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq 197 (251)
-+.+.++..++......++.+..+|..+-. +.-.+|..++..+..-+---+.+...+.+++.
T Consensus 390 ~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~ 452 (650)
T TIGR03185 390 QDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLE 452 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777777766533 44445544444444444333333333333333
No 121
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=62.51 E-value=88 Score=26.54 Aligned_cols=79 Identities=15% Similarity=0.294 Sum_probs=59.7
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHH
Q 025508 8 GMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKE 87 (251)
Q Consensus 8 emesLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkE 87 (251)
.+...-...|.|-.+...++.-+..|+..+++=+.+-.+|-..|..|=.+..||..++.+.= ..|.|=+....+-.
T Consensus 8 ~L~~~~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~----~~L~yF~~Ld~itr 83 (157)
T PF04136_consen 8 YLQQYREECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEIS----EKLQYFEELDPITR 83 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHhhHHHHHH
Confidence 34455566777888888889999999999999999999999999999999999998876543 33444444444444
Q ss_pred HHH
Q 025508 88 ELK 90 (251)
Q Consensus 88 EL~ 90 (251)
.|+
T Consensus 84 ~Ln 86 (157)
T PF04136_consen 84 RLN 86 (157)
T ss_pred HHc
Confidence 443
No 122
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=62.50 E-value=41 Score=25.01 Aligned_cols=48 Identities=8% Similarity=0.171 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHH
Q 025508 117 KARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVK 164 (251)
Q Consensus 117 ~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~ 164 (251)
++++||+++..+-...+|=.+-+.+++-++...+.-++.|..=-|-|+
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~Vs 48 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYEVVS 48 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889988887655444444444444444444444444444334443
No 123
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=62.48 E-value=72 Score=24.83 Aligned_cols=69 Identities=17% Similarity=0.245 Sum_probs=46.2
Q ss_pred HhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHH
Q 025508 50 TCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQI 125 (251)
Q Consensus 50 tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi 125 (251)
.+..++.|-+.+.+-++-.= ..+-+|-.|+.+=-.|+.....-+-.+|..|.+ +|+.|+..|+.|-.++
T Consensus 5 lLd~ir~Ef~~~~~e~~~~k---~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~k----mK~~YEeEI~rLr~eL 73 (79)
T PF08581_consen 5 LLDAIRQEFENLSQEANSYK---HQKDEYEHKINSQIQEMQQIRQKVYELEQAHRK----MKQQYEEEIARLRREL 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 34445555555554333221 145566667777778888888888888888864 7888888888777665
No 124
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=62.46 E-value=1.2e+02 Score=28.28 Aligned_cols=59 Identities=14% Similarity=0.338 Sum_probs=37.5
Q ss_pred hhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhH
Q 025508 51 CNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKA 118 (251)
Q Consensus 51 c~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i 118 (251)
.+.|.++.+++||.|.+....|...+- .....||+|+..+- .++=...++.+++|+...
T Consensus 100 Ls~L~~~k~~~rK~~~~~~q~i~~e~~-----~~t~~eveK~Kk~Y----~~~c~~~e~AR~K~ekas 158 (237)
T cd07685 100 LSLLIRDKQQLRKTFSEQWQLLKQEYT-----KTTQQDIEKLKSQY----RSLAKDSAQAKRKYQEAS 158 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcc
Confidence 567888999999999998888876665 33344555554433 233445555555555543
No 125
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=61.26 E-value=67 Score=25.85 Aligned_cols=15 Identities=20% Similarity=0.501 Sum_probs=8.1
Q ss_pred HHHHHHHHhHHHHHh
Q 025508 103 LRKVIDSIKQDYAAK 117 (251)
Q Consensus 103 h~raie~Lk~~~~~~ 117 (251)
|..-|..||..|+++
T Consensus 32 HE~KV~~LKksYe~r 46 (87)
T PF12709_consen 32 HETKVKALKKSYEAR 46 (87)
T ss_pred HHHHHHHHHhhHHHH
Confidence 555566666555443
No 126
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=61.23 E-value=2.3e+02 Score=30.23 Aligned_cols=39 Identities=28% Similarity=0.448 Sum_probs=18.2
Q ss_pred hhhhhhhhhhHHHHHHH-HHHhHHHHHHHHHHHHHHHHhhh
Q 025508 169 MKYNLEIQDLKDCLLLE-QEEKNELNKRVQDLEKELLMNRT 208 (251)
Q Consensus 169 ~kY~~EIqdLkD~L~~E-qEeKn~l~~kLq~~ekElli~kt 208 (251)
..+..++|+|++-+..- +.-+-+ ..++-.++++|...+.
T Consensus 394 ~~~~~e~q~L~ekl~~lek~~re~-qeri~~LE~ELr~l~~ 433 (717)
T PF09730_consen 394 DRLESEVQNLKEKLMSLEKSSRED-QERISELEKELRALSK 433 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHH
Confidence 34555555555544432 222222 4555555555554443
No 127
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=61.12 E-value=63 Score=25.83 Aligned_cols=51 Identities=31% Similarity=0.349 Sum_probs=41.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhh--hhhHHHhHHHHHHHhhhhHHhHHHHHHhHH
Q 025508 13 LSDFDQIYEDFKRAISEVQLLRSS--CNAETKRREALEITCNTLKKENERARNSYT 66 (251)
Q Consensus 13 L~~Fd~i~e~fk~g~~Eiq~Lrs~--~~aE~k~ReALE~tc~~Lk~dneRLrklyt 66 (251)
++.+...-++.+.=.-||+.||.. .|.+.. |-|+|+ -+|..+|.||+.+|.
T Consensus 16 l~~~~~~~~e~~~L~eEI~~Lr~qve~nPevt-r~A~EN--~rL~ee~rrl~~f~~ 68 (86)
T PF12711_consen 16 LPSESYLEEENEALKEEIQLLREQVEHNPEVT-RFAMEN--IRLREELRRLQSFYV 68 (86)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHhCHHHH-HHHHHH--HHHHHHHHHHHHHHH
Confidence 567888888888888999999965 455665 567776 489999999999996
No 128
>PRK00736 hypothetical protein; Provisional
Probab=60.84 E-value=55 Score=24.49 Aligned_cols=51 Identities=4% Similarity=0.101 Sum_probs=39.4
Q ss_pred HHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHH
Q 025508 115 AAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKF 165 (251)
Q Consensus 115 ~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~ 165 (251)
+..|.+||-+|.....-.-.=..+|.+-..+|.....++..|..||..+..
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLEE 54 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345778888887766555555567778888999999999999999987653
No 129
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=59.51 E-value=65 Score=23.34 Aligned_cols=59 Identities=19% Similarity=0.257 Sum_probs=38.3
Q ss_pred HHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHH
Q 025508 48 EITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQD 113 (251)
Q Consensus 48 E~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~ 113 (251)
...++.++....+|.++|...|...... ..++.|++.+-.++...=..-++.|..|+..
T Consensus 13 ~~~i~~i~~~~~~l~~l~~~~l~~~~~d-------~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~ 71 (103)
T PF00804_consen 13 REDIDKIKEKLNELRKLHKKILSSPDQD-------SELKRELDELTDEIKQLFQKIKKRLKQLSKD 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777788888888888766522 4566666666666666655556666555554
No 130
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=59.15 E-value=3.2e+02 Score=31.25 Aligned_cols=210 Identities=18% Similarity=0.244 Sum_probs=122.9
Q ss_pred HhhHHHHHH--HHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHH-------------Hhh
Q 025508 13 LSDFDQIYE--DFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLAD-------------QLE 77 (251)
Q Consensus 13 L~~Fd~i~e--~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~-------------qle 77 (251)
=--||-||+ .|--|+--+-.+|-.+..|++.-++-=-+.+.+|.+.+-++.--++.+.+.-- ..+
T Consensus 171 KkkfD~IF~~tky~KAld~~kk~rkd~~~evk~~~~~l~~lk~~K~~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~ 250 (1294)
T KOG0962|consen 171 KKKFDDIFSATKYTKALDSLKKLRKDQSQEVKTKKQELEHLKTLKERAEVLRLNIHSGQRKIEKSKEEVSELENELGPIE 250 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 346999998 68899999999999999999998888788888888888777766655544321 111
Q ss_pred hhHh-hhHHHHHHHhhhhhhhhhHHHHHHHHH-----------------------------------HHhHHHHHhHHHH
Q 025508 78 RKAK-CQSLKEELKRVNDEHLSKEYELRKVID-----------------------------------SIKQDYAAKARDF 121 (251)
Q Consensus 78 ~rtk-~qsLkEEL~r~n~e~lskE~Eh~raie-----------------------------------~Lk~~~~~~i~~L 121 (251)
.+-. ..+--+|+.+.-.+...++.+|..--+ ....+-++.++.|
T Consensus 251 ~~i~ei~~~~~el~k~~~~~~~l~~e~~~l~~~~~~l~~~i~~~~~~t~~~l~~~~~n~~~~~~~~~~~~~~~e~~~~~l 330 (1294)
T KOG0962|consen 251 AKIEEIEKSLKELEKLLKQVKLLDSEHKNLKKQISRLREKILKIFDGTDEELGELLSNFEERLEEMGEKLRELEREISDL 330 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHH
Confidence 1111 112223344444444444444433211 1122334566777
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHH---Hh---------hhhhHHHhhhhhh------hhhhhhhHHHHH
Q 025508 122 EDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTL---AK---------KLDQVKFDVEMKY------NLEIQDLKDCLL 183 (251)
Q Consensus 122 E~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L---~~---------~LeqV~~eve~kY------~~EIqdLkD~L~ 183 (251)
+.+.+++-.+++..+-.+..|..+...|..+.... .+ ....-.+..+..| ..-|.++-|-+.
T Consensus 331 ~~e~~~l~~~k~~~~~~~~~lq~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~~~~~~~ 410 (1294)
T KOG0962|consen 331 NEERSSLIQLKTELDLEQSELQAEAEFHQELKRQRDSLIQELAHQYQLDSVESLEFMAEVKKDFRNLILERFGGLEDDIK 410 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 88888888888888888888877777776655443 11 1111222222222 111222222222
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhhhh
Q 025508 184 LEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRS 222 (251)
Q Consensus 184 ~EqEeKn~l~~kLq~~ekElli~ktK~~eqqrD~tS~~h 222 (251)
-=......+.-.+..+.+++.-.+..+..+++.-.++.+
T Consensus 411 q~~k~~~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 449 (1294)
T KOG0962|consen 411 QRKKDIAELETNALDLIKEITDREVSLEAQKRIKDEIKK 449 (1294)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233344555666777777777777777777777776
No 131
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=58.98 E-value=1.4e+02 Score=27.14 Aligned_cols=143 Identities=22% Similarity=0.237 Sum_probs=69.6
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhH
Q 025508 84 SLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQV 163 (251)
Q Consensus 84 sLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV 163 (251)
-||..|+-+..++..|-+|.-----+|+ +........+.++..+-....+...-+.....+|...++-++.|..++...
T Consensus 14 LLKqQLke~q~E~~~K~~Eiv~Lr~ql~-e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~l 92 (202)
T PF06818_consen 14 LLKQQLKESQAEVNQKDSEIVSLRAQLR-ELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQL 92 (202)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhh
Confidence 4666677666666666655432222232 223344445555555555555555556666666666666666665555443
Q ss_pred HHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHH-HhhhhhhhhhhHHHHHHHHHhhhhhhHHH
Q 025508 164 KFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMA-EHNRDLTSVRSVETLKLKIMKLRKENEIL 240 (251)
Q Consensus 164 ~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekElli~ktK~~-eqqrD~tS~~hVetLKqKiMKLRKENE~L 240 (251)
. .||.+|++.+..-...+++...-- +.--.++... ....-.+..+.|+.|+.-|...|..++..
T Consensus 93 e--------~El~~Lr~~l~~~~~~~~~~~~l~-----~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q 157 (202)
T PF06818_consen 93 E--------AELAELREELACAGRLKRQCQLLS-----ESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQ 157 (202)
T ss_pred H--------HHHHHHHHHHHhhccchhhhcccc-----ccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHH
Confidence 3 345666666554311111111000 0000000000 11122335567788888887777766543
No 132
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=58.92 E-value=2.5e+02 Score=29.95 Aligned_cols=30 Identities=43% Similarity=0.568 Sum_probs=17.1
Q ss_pred HHHHHHHHH----HHHHHHhhh--------hhHHHhHHHHHH
Q 025508 20 YEDFKRAIS----EVQLLRSSC--------NAETKRREALEI 49 (251)
Q Consensus 20 ~e~fk~g~~----Eiq~Lrs~~--------~aE~k~ReALE~ 49 (251)
|+++|+.|. |++.|++.. .+|-+--||||.
T Consensus 123 fE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALes 164 (717)
T PF09730_consen 123 FEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALES 164 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666553 666666654 455555566654
No 133
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=58.81 E-value=92 Score=24.84 Aligned_cols=77 Identities=22% Similarity=0.296 Sum_probs=62.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhhhhHHHHHHHHHhhhhhhHHHHhhhh
Q 025508 169 MKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIMKLRKENEILKRKLN 245 (251)
Q Consensus 169 ~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekElli~ktK~~eqqrD~tS~~hVetLKqKiMKLRKENE~LKR~l~ 245 (251)
.+++.+++++.+-|.-.+.+.=.+.++-+.+=.+++-..-+......|......+++++..+.+-|....++|+=++
T Consensus 6 ~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~~~~~~~~l~~~~~~lk~~r~~~~v~k~v~q 82 (106)
T PF05837_consen 6 LNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQREDEELSEKLEKLEKELKKSRQRWRVMKNVFQ 82 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888887777777777777777787766666666666788889999999999999999999987554
No 134
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=58.44 E-value=1.5e+02 Score=27.08 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=12.2
Q ss_pred hhhHHHHHHHhhhhhhhhhHHH
Q 025508 81 KCQSLKEELKRVNDEHLSKEYE 102 (251)
Q Consensus 81 k~qsLkEEL~r~n~e~lskE~E 102 (251)
..-+|+-.|+..+..+..++..
T Consensus 32 Eiv~Lr~ql~e~~~~l~~~~~~ 53 (202)
T PF06818_consen 32 EIVSLRAQLRELRAELRNKESQ 53 (202)
T ss_pred HHHHHHHHHHHHHHHHHhhHHH
Confidence 3445666666666555555543
No 135
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=58.05 E-value=2.3e+02 Score=29.28 Aligned_cols=202 Identities=15% Similarity=0.251 Sum_probs=116.1
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHH------HHHHHHHHHhhhh-
Q 025508 7 DGMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYT------ESLENLADQLERK- 79 (251)
Q Consensus 7 EemesLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklyt------EsL~~~a~qle~r- 79 (251)
.++++|=.-.+.+-...--.-.++..+.+.+..=....+..+..+..|.++.....|.+. +-+.++-..++-.
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~ 407 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASE 407 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 455566555665555555555555555555554445555666666677666666555542 3333333333221
Q ss_pred HhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHH---HHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhh--HHHH
Q 025508 80 AKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDY---AAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHK--MHMQ 154 (251)
Q Consensus 80 tk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~---~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk--~hid 154 (251)
.+...|..+...+...+...-..++........++ ...|..+..+++.+..+..++|..+.||..++.... .+-.
T Consensus 408 ~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs 487 (594)
T PF05667_consen 408 QRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRS 487 (594)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 23334444444444444433333333332222222 366778889999999999999999999999987653 2233
Q ss_pred HHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHH---HHHHHHHhhhh
Q 025508 155 TLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQD---LEKELLMNRTK 209 (251)
Q Consensus 155 ~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~---~ekElli~ktK 209 (251)
+--+|.=.++.++. |=+.||.-.-.-.-.=|-|-|.+..+|.- .-.|+++.-+|
T Consensus 488 ~Yt~RIlEIv~NI~-KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrdAK 544 (594)
T PF05667_consen 488 AYTRRILEIVKNIR-KQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELIFRDAK 544 (594)
T ss_pred HHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 44455556666654 44566654322222336678888888874 45677777666
No 136
>PRK00846 hypothetical protein; Provisional
Probab=58.02 E-value=89 Score=24.44 Aligned_cols=55 Identities=13% Similarity=0.128 Sum_probs=42.3
Q ss_pred hHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHH
Q 025508 111 KQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKF 165 (251)
Q Consensus 111 k~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~ 165 (251)
-+..+..|.+||.+|...-.-.-.=..+|....+.+...+.+|..|..||..+..
T Consensus 8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~ 62 (77)
T PRK00846 8 DQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 62 (77)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3556678888888887765555554566777888999999999999999988763
No 137
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=58.02 E-value=3e+02 Score=30.54 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=27.0
Q ss_pred hhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHH
Q 025508 82 CQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIR 126 (251)
Q Consensus 82 ~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~ 126 (251)
++.+.-|+...+.++-.+=.+-++.+++++......-++|+-+=+
T Consensus 335 ~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~ 379 (980)
T KOG0980|consen 335 IEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQR 379 (980)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 455666666666666666666666666666655555555554433
No 138
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=57.99 E-value=2.9e+02 Score=30.29 Aligned_cols=111 Identities=23% Similarity=0.250 Sum_probs=85.9
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHh
Q 025508 87 EELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFD 166 (251)
Q Consensus 87 EEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~e 166 (251)
.|.-+.-+-+.+|-+|..+.||++|.++..=...+..+=-.++.-+.-.+.-+..++.|+..--..|+.+.-+|+-...|
T Consensus 444 ~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekE 523 (861)
T PF15254_consen 444 QESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKE 523 (861)
T ss_pred HHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhh
Confidence 44555566677888999999999999998888888888888999999999999999999999999999999999887665
Q ss_pred hhhhhhhhhhhhHHHHH---HHHHHhHHHHHHHHHHHHHHHH
Q 025508 167 VEMKYNLEIQDLKDCLL---LEQEEKNELNKRVQDLEKELLM 205 (251)
Q Consensus 167 ve~kY~~EIqdLkD~L~---~EqEeKn~l~~kLq~~ekElli 205 (251)
- +.|.--|. .|=+--++|.|.||+-.-.+|-
T Consensus 524 N--------~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~lL~ 557 (861)
T PF15254_consen 524 N--------QILGITLRQRDAEIERLRELTRTLQNSMAKLLS 557 (861)
T ss_pred h--------hHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3 22333222 2334456788888887666654
No 139
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=57.79 E-value=15 Score=33.51 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=29.5
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 025508 114 YAAKARDFEDQIRSLMLEKATNEATISNLHQDL 146 (251)
Q Consensus 114 ~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dL 146 (251)
+.-+|.++|++|+-+-.+.+-+||+|+.|++-.
T Consensus 134 a~~K~qemE~RIK~LhaqI~EKDAmIkVLQqrs 166 (205)
T PF12240_consen 134 ANRKCQEMENRIKALHAQIAEKDAMIKVLQQRS 166 (205)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456899999999999999999999999998753
No 140
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=57.71 E-value=2.7e+02 Score=29.98 Aligned_cols=131 Identities=15% Similarity=0.174 Sum_probs=94.7
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhh
Q 025508 95 EHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLE 174 (251)
Q Consensus 95 e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~E 174 (251)
++-.-...|...+..|.+.|.+....|-+++..+....-+-++-..+.-.+|++-..--|+|.+-|-+-..+.+++-- -
T Consensus 141 ELee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~t-l 219 (739)
T PF07111_consen 141 ELEEAQRLHQEQLSSLTQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVT-L 219 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-H
Confidence 444556678999999999999999999999999988888888888888899999888889999988888777776521 2
Q ss_pred hhhhHHHH-----------HHHHHHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhhhhHHHHH
Q 025508 175 IQDLKDCL-----------LLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLK 227 (251)
Q Consensus 175 IqdLkD~L-----------~~EqEeKn~l~~kLq~~ekElli~ktK~~eqqrD~tS~~hVetLK 227 (251)
++-||--+ .. -.|+-.|...+|.++++=--.-+-..=-|=-..|.-||=||.
T Consensus 220 v~~LR~YvGeq~p~~~~~~~w-e~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQ 282 (739)
T PF07111_consen 220 VEQLRKYVGEQVPPEVHSQAW-EPEREELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQ 282 (739)
T ss_pred HHHHHHHHhhhCCcccccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443 11 246778999999998874444444333344455666776643
No 141
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=56.63 E-value=1.6e+02 Score=27.08 Aligned_cols=75 Identities=11% Similarity=0.235 Sum_probs=41.7
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhh--------------hhHHHHHHHHHHHHHhhHHHHHHHhhh
Q 025508 95 EHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKA--------------TNEATISNLHQDLAAHKMHMQTLAKKL 160 (251)
Q Consensus 95 e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~a--------------t~Ea~I~qL~~dLaahk~hid~L~~~L 160 (251)
+-..-|.+|++...... .-++.+..|+.+++....--. .--.-|..|..++.+.|..-..--.+|
T Consensus 136 ek~~ae~eH~~~~~~~~-~ae~~v~~Lek~lkr~I~KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnL 214 (239)
T PF05276_consen 136 EKTRAEREHQRRARIYN-EAEQRVQQLEKKLKRAIKKSRPYFELKAKFNQQLEEQKEKVEELEAKVKQAKSRYSEALRNL 214 (239)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555444332 345666666666655443222 223456666666666666666666777
Q ss_pred hhHHHhhhhh
Q 025508 161 DQVKFDVEMK 170 (251)
Q Consensus 161 eqV~~eve~k 170 (251)
+++..++|-+
T Consensus 215 E~ISeeIH~~ 224 (239)
T PF05276_consen 215 EQISEEIHEQ 224 (239)
T ss_pred HHHHHHHHHH
Confidence 7777776643
No 142
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=56.52 E-value=2.9e+02 Score=29.92 Aligned_cols=128 Identities=25% Similarity=0.295 Sum_probs=90.7
Q ss_pred HHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHHhhhhhhhhh---HHHHHHHHHHHhHHHHHhHHHHHHH
Q 025508 48 EITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSK---EYELRKVIDSIKQDYAAKARDFEDQ 124 (251)
Q Consensus 48 E~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~r~n~e~lsk---E~Eh~raie~Lk~~~~~~i~~LE~q 124 (251)
.--+.+-+.--+|+.|. .|.|.-.-.+| |-...|+++++++-++++..+ -++-.|-++.--.+-+-.+.-|+++
T Consensus 519 qedi~~~k~qee~~~kq-ie~Lee~~~~L--rneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk 595 (786)
T PF05483_consen 519 QEDINNSKKQEEKMLKQ-IENLEETNTQL--RNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENK 595 (786)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHH
Confidence 33444555556666654 44576666676 788889999999999998664 4556666766666666677789999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhH
Q 025508 125 IRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLK 179 (251)
Q Consensus 125 i~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLk 179 (251)
+..+-.+-+.+.-+|..|+++=-+.|-.+-+-+.++.....-| .+-+.|++.++
T Consensus 596 ~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikV-n~L~~E~e~~k 649 (786)
T PF05483_consen 596 CNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKV-NKLQEELENLK 649 (786)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 9999999999999999999999998888877777665543222 23344444443
No 143
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=56.43 E-value=2.8e+02 Score=29.77 Aligned_cols=140 Identities=21% Similarity=0.272 Sum_probs=87.7
Q ss_pred hhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHH--HHHHhhHHHHHHHh
Q 025508 81 KCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQ--DLAAHKMHMQTLAK 158 (251)
Q Consensus 81 k~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~--dLaahk~hid~L~~ 158 (251)
+|.-.+..+..+...+..-+.+.++...+++... .++.++...++..-...+-+...+.||.. ++++...-|+-=.+
T Consensus 173 e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~-q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~~ele~i~~~~~dqlq 251 (716)
T KOG4593|consen 173 EVMLQEMRAKRLHSELQNEEKELDRQHKQLQEEN-QKIQELQASLEERADHEQQNAELEQQLSLSEELEAINKNMKDQLQ 251 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4666788899999999999999999999988764 45667777778877777888888888764 45555544443333
Q ss_pred hhhhHHHhhhhhhhhhhhhhHH---HHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhhhhHHHHHHHHHhhhh
Q 025508 159 KLDQVKFDVEMKYNLEIQDLKD---CLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIMKLRK 235 (251)
Q Consensus 159 ~LeqV~~eve~kY~~EIqdLkD---~L~~EqEeKn~l~~kLq~~ekElli~ktK~~eqqrD~tS~~hVetLKqKiMKLRK 235 (251)
.|+.+.. .-+.+..|.--|++ -.-.=|+|+++|..+|- |.++|+-+.--|-=
T Consensus 252 el~~l~~-a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~------------------------~~~~l~~~~~~LEL 306 (716)
T KOG4593|consen 252 ELEELER-ALSQLREELATLRENRETVGLLQEELEGLQSKLG------------------------RLEKLQSTLLGLEL 306 (716)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH------------------------HHHHHHHHHhhHHH
Confidence 3333322 12333344442322 33334666666666654 44455555555666
Q ss_pred hhHHHHhhhhh
Q 025508 236 ENEILKRKLNS 246 (251)
Q Consensus 236 ENE~LKR~l~~ 246 (251)
||++|+-+|..
T Consensus 307 eN~~l~tkL~r 317 (716)
T KOG4593|consen 307 ENEDLLTKLQR 317 (716)
T ss_pred HHHHHHHHHHH
Confidence 66666666543
No 144
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=56.34 E-value=1.3e+02 Score=25.99 Aligned_cols=24 Identities=42% Similarity=0.469 Sum_probs=15.7
Q ss_pred HHHHhhhhHHhHHHHHHhHHHHHH
Q 025508 47 LEITCNTLKKENERARNSYTESLE 70 (251)
Q Consensus 47 LE~tc~~Lk~dneRLrklytEsL~ 70 (251)
+...+++++.+++.|+.--.+.|.
T Consensus 25 ~~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 25 LRSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777776666665
No 145
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=56.05 E-value=2.3e+02 Score=28.48 Aligned_cols=59 Identities=22% Similarity=0.342 Sum_probs=39.0
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHH
Q 025508 8 GMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYT 66 (251)
Q Consensus 8 emesLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklyt 66 (251)
.++.+-..-|++|+-+...+.-.+..-.+...=.+.-..+.-.+..|..+.+||...|+
T Consensus 283 ~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~ 341 (569)
T PRK04778 283 KNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYT 341 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 34555566677777666665555555555555555556677777788888888888876
No 146
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=55.88 E-value=2.7e+02 Score=29.29 Aligned_cols=82 Identities=16% Similarity=0.110 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHH--HHHHhHHHHHHHH--HHHhhhhHhhhHHHHHHHhhhh
Q 025508 19 IYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENE--RARNSYTESLENL--ADQLERKAKCQSLKEELKRVND 94 (251)
Q Consensus 19 i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dne--RLrklytEsL~~~--a~qle~rtk~qsLkEEL~r~n~ 94 (251)
+..++..+.-.+......+.+....-.++...+..+..+.. .-++++. +-++ =....+-..+-.++.+|..+.+
T Consensus 119 ~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~k~~~~~~~~~~~~~~~l~~v~~ 196 (670)
T KOG0239|consen 119 LNMALLESVEELSQAEEDNPSIFVSLLELAQENRGLYLDLSKVTPENSLS--LLDLALKESLKLESDLGDLVTELEHVTN 196 (670)
T ss_pred hhhhhhhhhHhhhhhhcccccHHHHHHHHHhhhccccccccccchhhhHH--HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33444444444445555566666666666666666555555 3333333 2111 1223333444455555554444
Q ss_pred hhhhhHHH
Q 025508 95 EHLSKEYE 102 (251)
Q Consensus 95 e~lskE~E 102 (251)
-.-.+..+
T Consensus 197 ~~~~~~~~ 204 (670)
T KOG0239|consen 197 SISELESV 204 (670)
T ss_pred HHHHHHHH
Confidence 44333333
No 147
>PRK04863 mukB cell division protein MukB; Provisional
Probab=55.88 E-value=3.7e+02 Score=30.92 Aligned_cols=200 Identities=17% Similarity=0.207 Sum_probs=109.5
Q ss_pred CCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHh
Q 025508 2 AATSDDGMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAK 81 (251)
Q Consensus 2 aatsDEemesLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk 81 (251)
++-||+++++.+.+|..-.++....+.+.+.--+...+..+.-+.--+.+....+..+|-. --+.+..-+..++.
T Consensus 433 ~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~-----a~~~~~~~~~~~~~ 507 (1486)
T PRK04863 433 PDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSE-----AWDVARELLRRLRE 507 (1486)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHH-----HHHHHHHHHHHhHH
Confidence 4668999999999999999988887777665544444444332222233333344333321 12223333334444
Q ss_pred hhHHHHHHHhhhhhhhhhHH---HHHHHHHHHhH-------------HHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 025508 82 CQSLKEELKRVNDEHLSKEY---ELRKVIDSIKQ-------------DYAAKARDFEDQIRSLMLEKATNEATISNLHQD 145 (251)
Q Consensus 82 ~qsLkEEL~r~n~e~lskE~---Eh~raie~Lk~-------------~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~d 145 (251)
.+.+-.-+.-...++-..|. .+.++...|.+ .++.--.++|..+..+--++++--.--..+++.
T Consensus 508 ~~~~~~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 587 (1486)
T PRK04863 508 QRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQ 587 (1486)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444433333 22222222211 112223345555666666666666666777777
Q ss_pred HHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHH---HHHHHHhhhhHH
Q 025508 146 LAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDL---EKELLMNRTKMA 211 (251)
Q Consensus 146 Laahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~---ekElli~ktK~~ 211 (251)
+..+...|..|..+--. -.+++.-+.-|.++---+.+--..+..-+|.+ +.++.+.|.+..
T Consensus 588 ~~qL~~~i~~l~~~ap~-----W~~a~~al~~L~eq~g~~~~~~~~v~~~mq~~~~~~~~~~~~~~~~~ 651 (1486)
T PRK04863 588 LEQLQARIQRLAARAPA-----WLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELA 651 (1486)
T ss_pred HHHHHHHHHHHHHhChH-----HHhhHHHHHHHHHhcchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777665333 45677777888887777777666666655543 334444444433
No 148
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=55.84 E-value=3.4e+02 Score=30.48 Aligned_cols=130 Identities=25% Similarity=0.268 Sum_probs=74.2
Q ss_pred HHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHH-----HhHHHHH---HHHHHHhhhhHhhhHHHHHHHhhhhhhhhhHHH
Q 025508 31 QLLRSSCNAETKRREALEITCNTLKKENERAR-----NSYTESL---ENLADQLERKAKCQSLKEELKRVNDEHLSKEYE 102 (251)
Q Consensus 31 q~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLr-----klytEsL---~~~a~qle~rtk~qsLkEEL~r~n~e~lskE~E 102 (251)
++|--+|+.-...=.-|+-.+.-|.+|-||++ +.|-|.| -..+.-.+|.-+|.-.+...+++..++...+.+
T Consensus 191 ~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~ 270 (1072)
T KOG0979|consen 191 KSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRAKKELRKLEKE 270 (1072)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555444455555555555555543 2344554 333444445555555555555555444333322
Q ss_pred HHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhh
Q 025508 103 LRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEI 175 (251)
Q Consensus 103 h~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EI 175 (251)
+..+++++..+--+++-..+-|++...++-++..-+.....+++...++|+.+|+-.+
T Consensus 271 ---------------~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le 328 (1072)
T KOG0979|consen 271 ---------------IKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLE 328 (1072)
T ss_pred ---------------hhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223333333333566667777888888888888888888888888888887776543
No 149
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=55.69 E-value=2.5e+02 Score=28.90 Aligned_cols=108 Identities=19% Similarity=0.279 Sum_probs=56.7
Q ss_pred HHHHHhHHHHHHHHHH-Hhhh-hHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhH
Q 025508 59 ERARNSYTESLENLAD-QLER-KAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNE 136 (251)
Q Consensus 59 eRLrklytEsL~~~a~-qle~-rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~E 136 (251)
+-=|+.|.+.+.++.+ ||+. +..|..+..|+.-.......+|.+ +..+|.....+++++.++.+++...- -.|.
T Consensus 331 eSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~-kk~~e~k~~q~q~k~~k~~kel~~~~---E~n~ 406 (493)
T KOG0804|consen 331 ESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAE-KKIVERKLQQLQTKLKKCQKELKEER---EENK 406 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 3346777777777776 5543 334444444544444444444433 45677777777777777777766543 2233
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhh
Q 025508 137 ATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDL 178 (251)
Q Consensus 137 a~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdL 178 (251)
+ |..++.+.+.++.- ++++..+.--.|.-.|+||
T Consensus 407 ~----l~knq~vw~~kl~~----~~e~~~~~~~s~d~~I~dL 440 (493)
T KOG0804|consen 407 K----LIKNQDVWRGKLKE----LEEREKEALGSKDEKITDL 440 (493)
T ss_pred H----HHhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 3 33344444444432 3333333444455555555
No 150
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=55.58 E-value=3.4e+02 Score=30.47 Aligned_cols=134 Identities=19% Similarity=0.216 Sum_probs=70.3
Q ss_pred HHHHHhhhhHHhHHHHHHhHH-----HHHHHHHHHhhhhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHH
Q 025508 46 ALEITCNTLKKENERARNSYT-----ESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARD 120 (251)
Q Consensus 46 ALE~tc~~Lk~dneRLrklyt-----EsL~~~a~qle~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~ 120 (251)
..+..+..+++..++...+.. |.+.+-..||+ ....|--|.-+-.+++.-+++-+..=+ -.-.+..++..
T Consensus 232 ~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk----~k~~W~~V~~~~~ql~~~~~~i~~~qe-k~~~l~~ki~~ 306 (1074)
T KOG0250|consen 232 LKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLK----AKMAWAWVNEVERQLNNQEEEIKKKQE-KVDTLQEKIEE 306 (1074)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 455667777777766655543 33333333332 333444333333333333322221111 11122333334
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHH---hhhhhhh---hhhhhhHHHHHH
Q 025508 121 FEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKF---DVEMKYN---LEIQDLKDCLLL 184 (251)
Q Consensus 121 LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~---eve~kY~---~EIqdLkD~L~~ 184 (251)
...+++.+=.-.-+.||.|..+..+-.+-+.-|+.+...++-+.. +++.+|. +.|+.+|+|+..
T Consensus 307 ~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~ 376 (1074)
T KOG0250|consen 307 KQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDR 376 (1074)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444556777777777777777777777777766665 3455553 578888888764
No 151
>PRK10884 SH3 domain-containing protein; Provisional
Probab=55.33 E-value=1.6e+02 Score=26.43 Aligned_cols=29 Identities=17% Similarity=0.264 Sum_probs=12.8
Q ss_pred HHHHHHHhhHHHHHHHhhhhhHHHhhhhh
Q 025508 142 LHQDLAAHKMHMQTLAKKLDQVKFDVEMK 170 (251)
Q Consensus 142 L~~dLaahk~hid~L~~~LeqV~~eve~k 170 (251)
|+.+|+..++-.+.|...++....++.++
T Consensus 144 L~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 172 (206)
T PRK10884 144 LKNQLIVAQKKVDAANLQLDDKQRTIIMQ 172 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 152
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=54.48 E-value=2.1e+02 Score=27.56 Aligned_cols=26 Identities=4% Similarity=0.175 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhhH
Q 025508 138 TISNLHQDLAAHKMHMQTLAKKLDQV 163 (251)
Q Consensus 138 ~I~qL~~dLaahk~hid~L~~~LeqV 163 (251)
.+.++.++++..++.|..+...+...
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~~~~~~ 262 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQVQKAGL 262 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45555666666666666555555543
No 153
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=54.42 E-value=1e+02 Score=24.06 Aligned_cols=83 Identities=25% Similarity=0.304 Sum_probs=41.5
Q ss_pred hhhHHHHHHHhhhhhhhhhHHHHHHHHHHH---hHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHH
Q 025508 81 KCQSLKEELKRVNDEHLSKEYELRKVIDSI---KQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLA 157 (251)
Q Consensus 81 k~qsLkEEL~r~n~e~lskE~Eh~raie~L---k~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~ 157 (251)
.+..+.+.+.....++..++......+... =..++.+...-..+...--......++-|.+|..+|++.++.|+-+.
T Consensus 22 e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e 101 (126)
T PF13863_consen 22 EIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLE 101 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433221 11222222222233333334445566777777777777777777777
Q ss_pred hhhhhH
Q 025508 158 KKLDQV 163 (251)
Q Consensus 158 ~~LeqV 163 (251)
.++...
T Consensus 102 ~~l~~~ 107 (126)
T PF13863_consen 102 EKLEEY 107 (126)
T ss_pred HHHHHH
Confidence 766543
No 154
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=53.90 E-value=34 Score=27.29 Aligned_cols=54 Identities=30% Similarity=0.488 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 025508 139 ISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELL 204 (251)
Q Consensus 139 I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekEll 204 (251)
|+.+...|++++..++++.+||-.+.---+..=..| .|++.+.++|.+.|++|-
T Consensus 7 Id~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE------------~E~~~l~~~l~~~E~eL~ 60 (85)
T PF15188_consen 7 IDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLE------------KELNELKEKLENNEKELK 60 (85)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHH------------HHHHHHHHHhhccHHHHH
Confidence 677788888888888888888865543333222222 788888888888888864
No 155
>PF15456 Uds1: Up-regulated During Septation
Probab=53.81 E-value=73 Score=26.54 Aligned_cols=43 Identities=16% Similarity=0.254 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhH
Q 025508 16 FDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKEN 58 (251)
Q Consensus 16 Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dn 58 (251)
++.+-.+.+.=-.=|.++|.+++.|+|.|.|..+.|...-...
T Consensus 24 Ve~LKkEl~~L~~R~~~lr~kl~le~k~RdAa~sl~~l~~~~~ 66 (124)
T PF15456_consen 24 VEELKKELRSLDSRLEYLRRKLALESKIRDAAHSLSRLYSSSS 66 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4455556666667789999999999999999998877655444
No 156
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=53.67 E-value=1.5e+02 Score=25.86 Aligned_cols=118 Identities=12% Similarity=0.227 Sum_probs=73.5
Q ss_pred HHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHH
Q 025508 41 TKRREALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARD 120 (251)
Q Consensus 41 ~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~ 120 (251)
++.+.+++..|..|+++.+.++.-..+.-..+..--.-|... +-|.++-.-.+.....+..
T Consensus 61 s~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-------------------~eR~~~l~~l~~l~~~~~~ 121 (188)
T PF03962_consen 61 SQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-------------------EEREELLEELEELKKELKE 121 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-------------------HHHHHHHHHHHHHHHHHHH
Confidence 445556777788888887777654433322222221111111 2222222222333445555
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHH
Q 025508 121 FEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKD 180 (251)
Q Consensus 121 LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD 180 (251)
|.+++. .-...+...|.+++.++...+.-+....++..-+..=+..+|.-+-.+++.
T Consensus 122 l~~el~---~~~~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~~k~~~~~~~i~k 178 (188)
T PF03962_consen 122 LKKELE---KYSENDPEKIEKLKEEIKIAKEAANRWTDNIFSLKSYLKKKFGMDEEDIRK 178 (188)
T ss_pred HHHHHH---HHHhcCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCHHHHHH
Confidence 555555 334567889999999999999999999999999888888888777776663
No 157
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=53.58 E-value=2.9e+02 Score=29.01 Aligned_cols=115 Identities=20% Similarity=0.237 Sum_probs=74.3
Q ss_pred hHHHHHHHh---hhhHHhHHHHHH----hHHHHHHHHHHHhhhhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHH
Q 025508 43 RREALEITC---NTLKKENERARN----SYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYA 115 (251)
Q Consensus 43 ~ReALE~tc---~~Lk~dneRLrk----lytEsL~~~a~qle~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~ 115 (251)
.|+-+|..| +.++++|.+||- +-||++.--+. --.-|--+-.||.-.|.+.-++.++...-+..+-+-++
T Consensus 157 ~~~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~k---eq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~E 233 (596)
T KOG4360|consen 157 QRELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEK---EQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQE 233 (596)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555 556789999874 33454432111 11112223467888999999998888777777665443
Q ss_pred HhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhh
Q 025508 116 AKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVE 168 (251)
Q Consensus 116 ~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve 168 (251)
.+..|.+ +.+...--|.-++.+-.-...|.++..++.++.+++.+
T Consensus 234 -e~skLls-------ql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~ 278 (596)
T KOG4360|consen 234 -ENSKLLS-------QLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELE 278 (596)
T ss_pred -HHHHHHH-------HHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3344444 44444555677778888888999999999999988753
No 158
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=53.40 E-value=1.2e+02 Score=24.62 Aligned_cols=38 Identities=18% Similarity=0.349 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhh
Q 025508 135 NEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYN 172 (251)
Q Consensus 135 ~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~ 172 (251)
.=+.|..+..-+.+.+.+|+.|..-.+++..+|.-.|.
T Consensus 63 q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~ 100 (132)
T PF10392_consen 63 QASSIEELESVLQAVRSSVESLQSSYERLRSEVIEPYE 100 (132)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 34567778888888888899999888998888888885
No 159
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=52.10 E-value=70 Score=29.58 Aligned_cols=55 Identities=25% Similarity=0.363 Sum_probs=42.3
Q ss_pred hHHHHHhHHHHHHHHHH--------HHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHH
Q 025508 111 KQDYAAKARDFEDQIRS--------LMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKF 165 (251)
Q Consensus 111 k~~~~~~i~~LE~qi~~--------~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~ 165 (251)
+..|+..++.|+++|+. .-.++....+.|+.|..|...|..|...-..+|.....
T Consensus 26 ~~~Y~~ei~~L~~~i~~~~~~~~~~~~k~~~~l~~~i~~L~~E~~~h~~~~~~v~~~L~~~k~ 88 (298)
T PF11262_consen 26 KELYDEEIERLEKEISQMSRATISKKKKEKERLKNLIDKLPEELKKHQEHVEKVKKRLQEEKD 88 (298)
T ss_pred HHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35678888888888877 34455666788899999999999998888888876543
No 160
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=51.37 E-value=4.3e+02 Score=30.33 Aligned_cols=176 Identities=19% Similarity=0.234 Sum_probs=93.1
Q ss_pred HHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHHhhhhhhhhhHHHHHHHHH
Q 025508 29 EVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVID 108 (251)
Q Consensus 29 Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~r~n~e~lskE~Eh~raie 108 (251)
+|+.++...+.=-..-..++...+.+.+=-+++.++.++....--.--+--+++++++.+|..+-+....+..+-.+ .+
T Consensus 855 ~i~~l~~~~~e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~-~~ 933 (1294)
T KOG0962|consen 855 EISRLINLRNELKEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNT-SE 933 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhH-HH
Confidence 34444444443333333444444445444555555555554444444455566777777777766666555555444 77
Q ss_pred HHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-----HhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHH
Q 025508 109 SIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLA-----AHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLL 183 (251)
Q Consensus 109 ~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLa-----ahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~ 183 (251)
.+.+++...+++..+.+... ...++.++.--..|+. .+..|++-+.+++..........|.-| +.|+|.|
T Consensus 934 ~~aqk~~~~ine~~s~l~~~---~~~~~~~~~~~~~~~~~~~l~~~~e~l~~~~~~~~~~~~~l~~~~~~e-r~l~dnl- 1008 (1294)
T KOG0962|consen 934 KLAQKKRNDINEKVSLLHQI---YKLNECFEQYGFDDLRIAQLSESEEHLEERDNEVNEIKQKIRNQYQRE-RNLKDNL- 1008 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHH-
Confidence 77777777777666555433 3344444443333333 344555555555554444444444333 3444444
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhhHHHhh
Q 025508 184 LEQEEKNELNKRVQDLEKELLMNRTKMAEHN 214 (251)
Q Consensus 184 ~EqEeKn~l~~kLq~~ekElli~ktK~~eqq 214 (251)
..+-+.++++.++-|+--..+-+.+-.
T Consensus 1009 ----~~~~l~~q~~e~~re~~~ld~Qi~~~~ 1035 (1294)
T KOG0962|consen 1009 ----TLRNLERKLKELERELSELDKQILEAD 1035 (1294)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 345666777777776655555444433
No 161
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=51.30 E-value=60 Score=29.93 Aligned_cols=20 Identities=45% Similarity=0.562 Sum_probs=12.0
Q ss_pred HHHHHHhhhhHHhHHHHHHh
Q 025508 45 EALEITCNTLKKENERARNS 64 (251)
Q Consensus 45 eALE~tc~~Lk~dneRLrkl 64 (251)
..+......|+.||+|||++
T Consensus 87 ~~~~~~~~~l~~EN~rLr~L 106 (283)
T TIGR00219 87 QQLEILTQNLKQENVRLREL 106 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444577777777775
No 162
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=51.21 E-value=1.5e+02 Score=25.15 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=26.0
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHH
Q 025508 141 NLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDC 181 (251)
Q Consensus 141 qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~ 181 (251)
-++.|+.-.|+.+-.....++.--.++..+-.-+|.+||--
T Consensus 106 ~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~ 146 (177)
T PF07798_consen 106 EVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTE 146 (177)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666777776666666666666666666666665544
No 163
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=51.04 E-value=3.2e+02 Score=28.74 Aligned_cols=117 Identities=17% Similarity=0.177 Sum_probs=68.1
Q ss_pred hhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhh
Q 025508 98 SKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQD 177 (251)
Q Consensus 98 skE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqd 177 (251)
..-..+...+..+.+..++-.+..+..+..+...+...+.--.++. ..++...-+..|....+..... |+.
T Consensus 175 k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~-~~~~~~~~~~~l~~~~~~~~~~--------i~~ 245 (670)
T KOG0239|consen 175 KESLKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLG-NYADLRRNIKPLEGLESTIKKK--------IQA 245 (670)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhhHHHhhhhhhhhhhHHHHH--------HHH
Confidence 3344555556666666655555555555555543333333333322 2334444455555444444433 777
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhhhhH
Q 025508 178 LKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSV 223 (251)
Q Consensus 178 LkD~L~~EqEeKn~l~~kLq~~ekElli~ktK~~eqqrD~tS~~hV 223 (251)
|+.++.....+-.+++.....+..+.-=.....-.++.++++....
T Consensus 246 l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 291 (670)
T KOG0239|consen 246 LQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEEN 291 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888777777777777777777777666666677777777776543
No 164
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=50.95 E-value=69 Score=23.60 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=34.5
Q ss_pred ChhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHH
Q 025508 5 SDDGMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYT 66 (251)
Q Consensus 5 sDEemesLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklyt 66 (251)
-++++..+-..|+.+.+.|...+. .|-+|..-+.+|.++|..|+.+-.
T Consensus 10 ip~~~~~~W~~L~~~l~rY~~vL~--------------~R~~l~~e~~~L~~qN~eLr~lLk 57 (60)
T PF14775_consen 10 IPDEKIRLWDALENFLKRYNKVLL--------------DRAALIQEKESLEQQNEELRSLLK 57 (60)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666667777777766554 467777788999999999987643
No 165
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=50.77 E-value=1.4e+02 Score=30.71 Aligned_cols=87 Identities=24% Similarity=0.300 Sum_probs=51.1
Q ss_pred hhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhh---hhhh
Q 025508 96 HLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVE---MKYN 172 (251)
Q Consensus 96 ~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve---~kY~ 172 (251)
+-.||.-|.+.||-|+..|+.....|-..-..++.+-- -|||.-..---.||..-|.-=-.+---|..+|+ -+|.
T Consensus 343 fAaMEetHQkkiEdLQRqHqRELekLreEKdrLLAEET--AATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyl 420 (593)
T KOG4807|consen 343 FAAMEETHQKKIEDLQRQHQRELEKLREEKDRLLAEET--AATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYL 420 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHH
Confidence 56799999999999999999998888766666665432 244444332223333333221122122333333 3677
Q ss_pred hhhhhhHHHHHH
Q 025508 173 LEIQDLKDCLLL 184 (251)
Q Consensus 173 ~EIqdLkD~L~~ 184 (251)
.|+|.++-.|.|
T Consensus 421 eelqsvqRELeV 432 (593)
T KOG4807|consen 421 EELQSVQRELEV 432 (593)
T ss_pred HHHHHHHHHHHH
Confidence 777777665544
No 166
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=50.77 E-value=1.5e+02 Score=24.89 Aligned_cols=56 Identities=30% Similarity=0.351 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhh---h-----hhhhhhhHHHHHHHHHhhhhhhHHHHhhhhh
Q 025508 191 ELNKRVQDLEKELLMNRTKMAEHN---R-----DLTSVRSVETLKLKIMKLRKENEILKRKLNS 246 (251)
Q Consensus 191 ~l~~kLq~~ekElli~ktK~~eqq---r-----D~tS~~hVetLKqKiMKLRKENE~LKR~l~~ 246 (251)
.|+++++-+|.+|==+-.++.+-. + --.+-|.|-.|-+..+.+=+..+.+-.++..
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKE 140 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 567777777776654444433221 1 1235566777777777777777766666544
No 167
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=50.68 E-value=2e+02 Score=26.28 Aligned_cols=65 Identities=14% Similarity=0.274 Sum_probs=34.4
Q ss_pred HhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHH
Q 025508 116 AKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDC 181 (251)
Q Consensus 116 ~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~ 181 (251)
.-|.++...+..|+.++..-...+.+.++|+-...+=|.-..+-.++....+.-.| .|+.-|||-
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~-eey~~Lk~~ 96 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLY-EEYKPLKDE 96 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 44555555566666666666666666666665555544444444444444443333 255555543
No 168
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=50.40 E-value=4.1e+02 Score=29.86 Aligned_cols=81 Identities=17% Similarity=0.196 Sum_probs=39.8
Q ss_pred hhhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHH
Q 025508 77 ERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTL 156 (251)
Q Consensus 77 e~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L 156 (251)
.|+.-.--+|++++.++.+..--+. ++..+|+ .+.++.++++......-...+-+.+.-..+-...++|.++
T Consensus 252 ~~k~~~~r~k~~~r~l~k~~~pi~~-~~eeLe~-------~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~ 323 (1072)
T KOG0979|consen 252 AYKQAKDRAKKELRKLEKEIKPIED-KKEELES-------EKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEK 323 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhh-hhhhHHh-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556666665555544332 3333333 3334455555555555445555555555555555555555
Q ss_pred HhhhhhHHH
Q 025508 157 AKKLDQVKF 165 (251)
Q Consensus 157 ~~~LeqV~~ 165 (251)
.+.++-...
T Consensus 324 ~~~le~lk~ 332 (1072)
T KOG0979|consen 324 KNKLESLKK 332 (1072)
T ss_pred HHHHHHHHH
Confidence 555554433
No 169
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=49.66 E-value=3e+02 Score=28.02 Aligned_cols=38 Identities=29% Similarity=0.439 Sum_probs=23.9
Q ss_pred HHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHH
Q 025508 47 LEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELK 90 (251)
Q Consensus 47 LE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~ 90 (251)
|+-...+||.+--|=-++|+|+|- |-|-+|.-|.|.|+
T Consensus 279 Leesye~Lke~~krdy~fi~etLQ------EERyR~erLEEqLN 316 (455)
T KOG3850|consen 279 LEESYERLKEQIKRDYKFIAETLQ------EERYRYERLEEQLN 316 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence 566677777777777788888874 33444444444443
No 170
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=48.95 E-value=1.1e+02 Score=29.76 Aligned_cols=82 Identities=23% Similarity=0.434 Sum_probs=49.0
Q ss_pred hhhHHHHHhhHHHHHH---HHHHHHHHHHHHHhhhhhHHHh-HHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHh
Q 025508 6 DDGMESLLSDFDQIYE---DFKRAISEVQLLRSSCNAETKR-REALEITCNTLKKENERARNSYTESLENLADQLERKAK 81 (251)
Q Consensus 6 DEemesLL~~Fd~i~e---~fk~g~~Eiq~Lrs~~~aE~k~-ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk 81 (251)
.+|.+.|-.+|-++-+ .|+.-+.|+..+...|++.+++ |.-|.. |+....++.+. ..-+.+..
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~----L~~sLk~~~~~---------~~~e~~~~ 69 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKE----LKKSLKRCKKS---------LSAEEREL 69 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhccC---------CChhHHHH
Confidence 4677888888887765 7888888888888888877654 222222 22222222111 11244556
Q ss_pred hhHHHHHHHhhhhhhhhhH
Q 025508 82 CQSLKEELKRVNDEHLSKE 100 (251)
Q Consensus 82 ~qsLkEEL~r~n~e~lskE 100 (251)
++.|+++++++...+-.||
T Consensus 70 i~~L~~~Ik~r~~~l~DmE 88 (330)
T PF07851_consen 70 IEKLEEDIKERRCQLFDME 88 (330)
T ss_pred HHHHHHHHHHHHhhHHHHH
Confidence 6666666666666666555
No 171
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=48.93 E-value=12 Score=28.58 Aligned_cols=20 Identities=40% Similarity=0.296 Sum_probs=16.7
Q ss_pred HHHHhhhhhhHHHHhhhhhc
Q 025508 228 LKIMKLRKENEILKRKLNSS 247 (251)
Q Consensus 228 qKiMKLRKENE~LKR~l~~s 247 (251)
..|-+|+|||++||=|+..-
T Consensus 7 ~~i~~L~KENF~LKLrI~fL 26 (75)
T PF07989_consen 7 EQIDKLKKENFNLKLRIYFL 26 (75)
T ss_pred HHHHHHHHhhhhHHHHHHHH
Confidence 45789999999999988654
No 172
>PF11461 RILP: Rab interacting lysosomal protein; InterPro: IPR021563 RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol. RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. ; PDB: 1YHN_B.
Probab=48.70 E-value=65 Score=24.28 Aligned_cols=38 Identities=34% Similarity=0.544 Sum_probs=29.7
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHhhhh
Q 025508 175 IQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRD 216 (251)
Q Consensus 175 IqdLkD~L~~EqEeKn~l~~kLq~~ekElli~ktK~~eqqrD 216 (251)
+|.|||+|. |+|.|.-++=.+|.||-.-|-........
T Consensus 2 l~ELr~VL~----ERNeLK~~v~~leEEL~~yk~~~~~~~~~ 39 (60)
T PF11461_consen 2 LQELREVLQ----ERNELKARVFLLEEELAYYKSELLPDEES 39 (60)
T ss_dssp -TTHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHSSTT--
T ss_pred hHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcccCCcccC
Confidence 478999985 89999999999999999988665544443
No 173
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=48.48 E-value=1.5e+02 Score=24.21 Aligned_cols=49 Identities=20% Similarity=0.219 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHH
Q 025508 18 QIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYT 66 (251)
Q Consensus 18 ~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklyt 66 (251)
..+.+...-++=|-.|=...-.....||.|..++..+..|++||..-+.
T Consensus 28 ~~~~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~ 76 (151)
T PF11559_consen 28 ESEDNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVE 76 (151)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3466666666666666666677888999999999999999999876543
No 174
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=47.92 E-value=2.5e+02 Score=26.61 Aligned_cols=141 Identities=18% Similarity=0.253 Sum_probs=69.9
Q ss_pred HHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHH
Q 025508 44 REALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFED 123 (251)
Q Consensus 44 ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~ 123 (251)
.+.|+.+...|+.|.+.|.+ +-+-++.+...| +.+++.|+.|+..+....--++.=-...+ ..+-+
T Consensus 146 k~~L~~~~~~l~~D~~~L~~-~~~~l~~~~~~l--~~~~~~L~~e~~~L~~~~~e~~~~d~~eL-----------~~lk~ 211 (312)
T smart00787 146 KEGLDENLEGLKEDYKLLMK-ELELLNSIKPKL--RDRKDALEEELRQLKQLEDELEDCDPTEL-----------DRAKE 211 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHhCCHHHH-----------HHHHH
Confidence 46788888888888888874 455555555544 45566777766654433322222111122 22223
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHH----HHHHHHHHhHHHHHHHHHH
Q 025508 124 QIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKD----CLLLEQEEKNELNKRVQDL 199 (251)
Q Consensus 124 qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD----~L~~EqEeKn~l~~kLq~~ 199 (251)
+|+....+....=.-+.+++.++.+..+-|.....+.. .+..+|+++.. |=...--|-+.|..++..+
T Consensus 212 ~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~--------e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~L 283 (312)
T smart00787 212 KLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKS--------ELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLL 283 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 33333333333333334444444444444443333332 23344444443 2233444556677777777
Q ss_pred HHHHHHh
Q 025508 200 EKELLMN 206 (251)
Q Consensus 200 ekElli~ 206 (251)
|+-..++
T Consensus 284 e~l~g~~ 290 (312)
T smart00787 284 QSLTGWK 290 (312)
T ss_pred HHHhCCe
Confidence 7765544
No 175
>PRK04863 mukB cell division protein MukB; Provisional
Probab=47.36 E-value=5e+02 Score=29.94 Aligned_cols=14 Identities=29% Similarity=0.278 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHH
Q 025508 20 YEDFKRAISEVQLL 33 (251)
Q Consensus 20 ~e~fk~g~~Eiq~L 33 (251)
|+-||+-|.+.+.+
T Consensus 256 rdlFk~lI~~~~~~ 269 (1486)
T PRK04863 256 RDLFKHLITESTNY 269 (1486)
T ss_pred HHHHHHHhhhhhhh
Confidence 55677777766654
No 176
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=47.27 E-value=3.4e+02 Score=28.03 Aligned_cols=70 Identities=33% Similarity=0.344 Sum_probs=47.4
Q ss_pred hHHHHHHHHHH-hHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhhhhHH-----------HHHHHHHhhhhhhHHHHhhhh
Q 025508 178 LKDCLLLEQEE-KNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSVE-----------TLKLKIMKLRKENEILKRKLN 245 (251)
Q Consensus 178 LkD~L~~EqEe-Kn~l~~kLq~~ekElli~ktK~~eqqrD~tS~~hVe-----------tLKqKiMKLRKENE~LKR~l~ 245 (251)
|-..|--|||. -|.|=+++++++.|-.+.--|+-+---+-++.+-|. .+|--|-+|+-|.|-|+-.++
T Consensus 191 lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~ 270 (552)
T KOG2129|consen 191 LENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLS 270 (552)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445554 489999999999999988888854444444444443 477777778877777777665
Q ss_pred hc
Q 025508 246 SS 247 (251)
Q Consensus 246 ~s 247 (251)
..
T Consensus 271 ~A 272 (552)
T KOG2129|consen 271 RA 272 (552)
T ss_pred HH
Confidence 43
No 177
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=47.17 E-value=58 Score=29.89 Aligned_cols=33 Identities=33% Similarity=0.377 Sum_probs=30.0
Q ss_pred hhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHH
Q 025508 170 KYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKE 202 (251)
Q Consensus 170 kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekE 202 (251)
++..+|..|+|.|-....|+++...++|.+--+
T Consensus 30 k~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll~~ 62 (214)
T PF07795_consen 30 KREEQIAHLKDLLKKAYQERDEAREQLQKLLLE 62 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 688999999999999999999999999987643
No 178
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=47.02 E-value=3.5e+02 Score=28.09 Aligned_cols=77 Identities=21% Similarity=0.233 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHH
Q 025508 134 TNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMA 211 (251)
Q Consensus 134 t~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekElli~ktK~~ 211 (251)
.....++++..++.-.++-|..|..-+..+.++..- -..+|+.+|.-|.-|---+++++.+.|.|-++|-+.+.--.
T Consensus 145 ~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~r-l~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~ 221 (546)
T KOG0977|consen 145 DYLSRLSELEAEINTLKRRIKALEDELKRLKAENSR-LREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHK 221 (546)
T ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 346677777888888888888888888888887654 45689999999888888999999999999999998874433
No 179
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=46.75 E-value=3.3e+02 Score=27.63 Aligned_cols=39 Identities=21% Similarity=0.189 Sum_probs=19.5
Q ss_pred hhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 025508 160 LDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQD 198 (251)
Q Consensus 160 LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~ 198 (251)
+..+-..+...++..+.+|.+-+.-=.++-..++++|..
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~ 416 (650)
T TIGR03185 378 LEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKIST 416 (650)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333334444344555666665555555555555555543
No 180
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=46.35 E-value=86 Score=24.43 Aligned_cols=69 Identities=17% Similarity=0.262 Sum_probs=47.9
Q ss_pred hhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhH----HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhH
Q 025508 82 CQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKA----RDFEDQIRSLMLEKATNEATISNLHQDLAAHKM 151 (251)
Q Consensus 82 ~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i----~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~ 151 (251)
-.+|.+|+.++..++- .|..-+.+++.--.....-. ..+-.+++.++.+.|+=|+.|..|.+.+.....
T Consensus 10 r~~LeqeV~~Lq~~L~-~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~ 82 (88)
T PF14389_consen 10 RSALEQEVAELQKQLQ-EEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSLYR 82 (88)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667776666543 67777777776544322222 466779999999999999999999887766543
No 181
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=46.21 E-value=2.5e+02 Score=26.09 Aligned_cols=152 Identities=21% Similarity=0.270 Sum_probs=78.5
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhH----HHHHHhHHHHHHHHHHHhhhhHh
Q 025508 6 DDGMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKEN----ERARNSYTESLENLADQLERKAK 81 (251)
Q Consensus 6 DEemesLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dn----eRLrklytEsL~~~a~qle~rtk 81 (251)
|-+|++|-.--+-+=++++.+..|+..++..+.+=-..=+.++..+..++.|. +|+.+.- +-|.+..++= .
T Consensus 16 D~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e-~kl~~v~~~~----e 90 (239)
T COG1579 16 DLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAE-EKLSAVKDER----E 90 (239)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccccHH----H
Confidence 44555655555556667777777777776655443333333433333333322 2222221 1123333333 3
Q ss_pred hhHHHHHHHhhhhhhhhhHHHHHHHHHH---HhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHh
Q 025508 82 CQSLKEELKRVNDEHLSKEYELRKVIDS---IKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAK 158 (251)
Q Consensus 82 ~qsLkEEL~r~n~e~lskE~Eh~raie~---Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~ 158 (251)
+..|.-|+.-++++..+.+++.....+- |...-.--...+.++-.++..-.++-++-|.-++++.-+|.+....|..
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~ 170 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKE 170 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666677766666665443322 2222222222333333444445556666777777777777777777777
Q ss_pred hhhh
Q 025508 159 KLDQ 162 (251)
Q Consensus 159 ~Leq 162 (251)
.++.
T Consensus 171 ~l~~ 174 (239)
T COG1579 171 KLDP 174 (239)
T ss_pred hcCH
Confidence 7764
No 182
>PRK11637 AmiB activator; Provisional
Probab=46.21 E-value=2.7e+02 Score=26.56 Aligned_cols=38 Identities=16% Similarity=0.270 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHH
Q 025508 119 RDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTL 156 (251)
Q Consensus 119 ~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L 156 (251)
.+++.+...+..+++.....+.+|..++....+-+..|
T Consensus 201 ~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l 238 (428)
T PRK11637 201 YEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSEL 238 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444333
No 183
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=45.95 E-value=3.4e+02 Score=27.62 Aligned_cols=103 Identities=17% Similarity=0.395 Sum_probs=57.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHH----H-Hhh---hhHhh
Q 025508 11 SLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLA----D-QLE---RKAKC 82 (251)
Q Consensus 11 sLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a----~-qle---~rtk~ 82 (251)
-+=..|++.|+.|..+--|+|--|+.+.|=-.----.|+.|. -+|.+.|.|++-...-+ + ..+ +-.-+
T Consensus 150 ~~~~~~er~~~~y~~~~qElq~k~t~~~afn~tikife~q~~----~~e~~~ka~~d~~~~eqG~qg~~e~~~~~~a~N~ 225 (464)
T KOG4637|consen 150 EKSLEYERLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQCG----TQENLSKAYIDRFRREQGSQGNSEKEIGRIANNY 225 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH----HHHHHHHHHHhHHHHHhccCCchHHHHHHHHhhh
Confidence 345689999999999999999887766432222223344443 46889999998776551 1 110 11122
Q ss_pred hHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHh
Q 025508 83 QSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAK 117 (251)
Q Consensus 83 qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~ 117 (251)
--+++-+.+.++.+.+.++-.+.-|-.+.+..+.+
T Consensus 226 ~~~ks~i~ei~~sl~~l~d~lk~~~q~~~~~~enr 260 (464)
T KOG4637|consen 226 DKLKSRIREIHDSLTRLEDDLKALIQALRSNSENR 260 (464)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhh
Confidence 23444455555555555555444444444433333
No 184
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=45.77 E-value=2.3e+02 Score=25.69 Aligned_cols=65 Identities=18% Similarity=0.346 Sum_probs=44.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHH
Q 025508 112 QDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLL 183 (251)
Q Consensus 112 ~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~ 183 (251)
.++.-.|..|+.+| +-+-+.++-.|..+..+|.......+-|....+ ...++|+..|.||.--|-
T Consensus 85 ~~l~~~i~~le~~l---vd~~~~kd~~i~~~~~~l~~~~~r~~el~~~r~----~e~~~YesRI~dLE~~L~ 149 (196)
T PF15272_consen 85 EDLQSRISNLEKQL---VDQMIEKDREIRTLQDELLSLELRNKELQNERE----RERIAYESRIADLERQLN 149 (196)
T ss_pred HHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHH
Confidence 34445666666655 233456677888899999888777777766555 344589999999876654
No 185
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=45.74 E-value=1.9e+02 Score=26.33 Aligned_cols=84 Identities=18% Similarity=0.234 Sum_probs=60.2
Q ss_pred hHHHHHHHhhhhhhhhhHHHHHH-------HHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHH
Q 025508 83 QSLKEELKRVNDEHLSKEYELRK-------VIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQT 155 (251)
Q Consensus 83 qsLkEEL~r~n~e~lskE~Eh~r-------aie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~ 155 (251)
..|+-||..+-+.+...+.+-.+ ....+|..|+.-..=-+.+++.+.-..+....-+.-++-||.....++++
T Consensus 99 vrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV~~ 178 (195)
T PF12761_consen 99 VRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQVDG 178 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555544 45677888887777777777777655666777789999999999999999
Q ss_pred HHhhhhhHHHh
Q 025508 156 LAKKLDQVKFD 166 (251)
Q Consensus 156 L~~~LeqV~~e 166 (251)
|..=|.....+
T Consensus 179 Le~~L~~k~~e 189 (195)
T PF12761_consen 179 LESHLSSKKQE 189 (195)
T ss_pred HHHHHHHHHHH
Confidence 99888655443
No 186
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=44.46 E-value=1.9e+02 Score=24.21 Aligned_cols=40 Identities=28% Similarity=0.329 Sum_probs=30.4
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHh
Q 025508 174 EIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMAEH 213 (251)
Q Consensus 174 EIqdLkD~L~~EqEeKn~l~~kLq~~ekElli~ktK~~eq 213 (251)
.|-|+.--|--|..+|-+|...+-..|+-.-|.-++++|-
T Consensus 66 ki~ea~~~le~eK~ak~~l~~r~~k~~~dka~lel~l~e~ 105 (107)
T PF09304_consen 66 KIDEARRNLEDEKQAKLELESRLLKAQKDKAILELKLAEA 105 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Confidence 3445555566688888899999999998888877777763
No 187
>PF13097 CENP-U: CENP-A nucleosome associated complex (NAC) subunit
Probab=44.37 E-value=78 Score=28.33 Aligned_cols=44 Identities=20% Similarity=0.331 Sum_probs=34.2
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHH
Q 025508 7 DGMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERA 61 (251)
Q Consensus 7 EemesLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRL 61 (251)
-|++.+|+-|..+..+||.+|. | .-||+|+...|...+.+.-.+
T Consensus 104 tELDVvL~~FEk~~~eYkq~ie------S-----~~cr~AI~~F~~~~keqL~~~ 147 (175)
T PF13097_consen 104 TELDVVLSAFEKTALEYKQSIE------S-----KICRKAINKFYSNFKEQLIEM 147 (175)
T ss_pred hHHHHHHHHHHHHHHHHHHhhc------c-----HHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999998762 1 238999998888877654433
No 188
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.88 E-value=1.7e+02 Score=27.63 Aligned_cols=61 Identities=8% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHH
Q 025508 105 KVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKF 165 (251)
Q Consensus 105 raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~ 165 (251)
..+..=+.+.+..|..|-++|..+.-+.-....=|+++..++...+.-|+.+..++-....
T Consensus 41 ~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~ 101 (265)
T COG3883 41 SELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQE 101 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 189
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=43.87 E-value=5.1e+02 Score=29.08 Aligned_cols=139 Identities=22% Similarity=0.338 Sum_probs=85.3
Q ss_pred HHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhh---hhhhhhhhhhHHHHH
Q 025508 107 IDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVE---MKYNLEIQDLKDCLL 183 (251)
Q Consensus 107 ie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve---~kY~~EIqdLkD~L~ 183 (251)
++.+-..-..+...|+.+-+-+-.++.-.|-.|.-++.+|...+-..-.-..+.+|-+.-|| ++..-+|-|++-.|
T Consensus 261 lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~L- 339 (1265)
T KOG0976|consen 261 LQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCAL- 339 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 33334445566677777778888888889999999999888887665555556676666555 56677888887444
Q ss_pred HHHHHh-HHHHHHHHHHHHHH---HHhhhhHHH-------hhhhhhh-----hhhHHHHHHHHHhh---hhhhHHHHhhh
Q 025508 184 LEQEEK-NELNKRVQDLEKEL---LMNRTKMAE-------HNRDLTS-----VRSVETLKLKIMKL---RKENEILKRKL 244 (251)
Q Consensus 184 ~EqEeK-n~l~~kLq~~ekEl---li~ktK~~e-------qqrD~tS-----~~hVetLKqKiMKL---RKENE~LKR~l 244 (251)
.|+--| ..+..|++.+||.- +.+=-++-+ -.|-+.+ -++++-||.+|+.| +|.+|..|--|
T Consensus 340 lEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL 419 (1265)
T KOG0976|consen 340 LEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNEL 419 (1265)
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHH
Confidence 444433 45667777776642 222111111 1112222 24677788887765 56666666555
Q ss_pred hh
Q 025508 245 NS 246 (251)
Q Consensus 245 ~~ 246 (251)
..
T Consensus 420 ~~ 421 (1265)
T KOG0976|consen 420 QE 421 (1265)
T ss_pred HH
Confidence 43
No 190
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=43.65 E-value=1.8e+02 Score=23.75 Aligned_cols=89 Identities=24% Similarity=0.261 Sum_probs=40.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhh-hhHhhhHHHHHHH
Q 025508 12 LLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLE-RKAKCQSLKEELK 90 (251)
Q Consensus 12 LL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle-~rtk~qsLkEEL~ 90 (251)
||..-++--.--.+....+..+++....=...-+.|+..++.++.+..- ..+-...+-.++. -..+....++|+.
T Consensus 43 Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~----~~~~~~~l~~~~~~~~~~~k~~kee~~ 118 (151)
T PF11559_consen 43 LLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELAS----AEEKERQLQKQLKSLEAKLKQEKEELQ 118 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444455556555555444455555555544444431 1222222222221 2334455667777
Q ss_pred hhhhhhhhhHHHHH
Q 025508 91 RVNDEHLSKEYELR 104 (251)
Q Consensus 91 r~n~e~lskE~Eh~ 104 (251)
++..-+-+...-|.
T Consensus 119 klk~~~~~~~tq~~ 132 (151)
T PF11559_consen 119 KLKNQLQQRKTQYE 132 (151)
T ss_pred HHHHHHHHHHHHHH
Confidence 77665555444443
No 191
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=43.54 E-value=2.3e+02 Score=24.97 Aligned_cols=64 Identities=16% Similarity=0.248 Sum_probs=44.2
Q ss_pred hHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHH
Q 025508 79 KAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNL 142 (251)
Q Consensus 79 rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL 142 (251)
+..++.|.+-+.++-.+-.....-...+|-..+++..-+..-||.+|..+....-..+|-+...
T Consensus 106 k~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~ev 169 (201)
T PF13851_consen 106 KWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEV 169 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666655555555556677888888888888889999988887777766654443
No 192
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=43.11 E-value=93 Score=22.61 Aligned_cols=61 Identities=21% Similarity=0.353 Sum_probs=42.3
Q ss_pred HHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHh-hhhHhhhHHHHHHHhhhhhh
Q 025508 29 EVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQL-ERKAKCQSLKEELKRVNDEH 96 (251)
Q Consensus 29 Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~ql-e~rtk~qsLkEEL~r~n~e~ 96 (251)
-|+.|+.....|.+-|+..|....-+..+|.. .+.....+| +...|...|..+|.+.+.+.
T Consensus 2 ~i~~L~~~i~~E~ki~~Gae~m~~~~~t~~~~-------~~~~~~~~l~~s~~kI~~L~~~L~~l~~~~ 63 (70)
T PF02185_consen 2 RIEELQKKIDKELKIKEGAENMLQAYSTDKKK-------VLSEAESQLRESNQKIELLREQLEKLQQRS 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCcHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 36788999999999999999888877666644 222222232 35667778888887776554
No 193
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=42.34 E-value=90 Score=32.46 Aligned_cols=72 Identities=22% Similarity=0.234 Sum_probs=47.2
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHH
Q 025508 113 DYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLE 185 (251)
Q Consensus 113 ~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~E 185 (251)
+|..+...+.+.+..+.-..|-.+--..-|..+|-.-..|+||+.++=-+...+-+ +|...||.++|.+.-+
T Consensus 39 d~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~-~~E~~i~~i~d~l~~~ 110 (604)
T KOG3564|consen 39 DFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCE-KLETQIQLIKDMLKCD 110 (604)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHhcc
Confidence 34455555555555555555544545555666666677888888887666555544 6899999999988543
No 194
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=42.16 E-value=1.7e+02 Score=30.18 Aligned_cols=62 Identities=23% Similarity=0.417 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 025508 134 TNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNR 207 (251)
Q Consensus 134 t~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekElli~k 207 (251)
.=|+-|.-|++.++.-.--+|+++.==+-|..=.+-||+ +++ ||||+.++|||++.-|-..+
T Consensus 342 yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~---------viL---EKnd~~k~lqnLqe~la~tq 403 (527)
T PF15066_consen 342 YLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYR---------VIL---EKNDIEKTLQNLQEALANTQ 403 (527)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhH---------hhh---hhhhHHHHHHHHHHHHHHHH
Confidence 334445555555555555666665544455555666775 233 58888888888876544433
No 195
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=41.92 E-value=4e+02 Score=27.23 Aligned_cols=150 Identities=10% Similarity=0.127 Sum_probs=0.0
Q ss_pred ChhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHH----------------HhHHHHHHHhhhhHHhHHHHHHhHHHH
Q 025508 5 SDDGMESLLSDFDQIYEDFKRAISEVQLLRSSCNAET----------------KRREALEITCNTLKKENERARNSYTES 68 (251)
Q Consensus 5 sDEemesLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~----------------k~ReALE~tc~~Lk~dneRLrklytEs 68 (251)
+++.|..|=..+...--+-..+-...+.++....... ..-..|......+..+...|..-|+
T Consensus 235 ~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~-- 312 (754)
T TIGR01005 235 ATQQLAELNTELSRARANRAAAEGTADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTML-- 312 (754)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhC--
Q ss_pred HHHHHHHhhhhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHH---HHHhhhhHHHHHHHHHH
Q 025508 69 LENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSL---MLEKATNEATISNLHQD 145 (251)
Q Consensus 69 L~~~a~qle~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~---~~q~at~Ea~I~qL~~d 145 (251)
+.|+..+.++.++..++.++...-......+..--..-....+.|+.++..+ +.+....+.-..+|..+
T Consensus 313 --------~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re 384 (754)
T TIGR01005 313 --------ANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRD 384 (754)
T ss_pred --------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHH
Q ss_pred HHHhhHHHHHHHhhhhhHH
Q 025508 146 LAAHKMHMQTLAKKLDQVK 164 (251)
Q Consensus 146 Laahk~hid~L~~~LeqV~ 164 (251)
..+...--+.|-.|+++..
T Consensus 385 ~~~~~~~Y~~ll~r~~e~~ 403 (754)
T TIGR01005 385 AAAKRQLYESYLTNYRQAA 403 (754)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 196
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=41.89 E-value=56 Score=22.93 Aligned_cols=42 Identities=31% Similarity=0.415 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHH
Q 025508 140 SNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCL 182 (251)
Q Consensus 140 ~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L 182 (251)
+||..|-.+.|+.-|.|...-+.+..+++. -+.+|+.|+..+
T Consensus 1 KQlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~-L~aev~~L~~kl 42 (45)
T PF02183_consen 1 KQLERDYDALKASYDSLKAEYDSLKKENEK-LRAEVQELKEKL 42 (45)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh
Confidence 378889999999999999888888888765 666666666554
No 197
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=41.84 E-value=2.3e+02 Score=24.38 Aligned_cols=113 Identities=17% Similarity=0.278 Sum_probs=75.2
Q ss_pred HHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHHhhhhhhhhhHHHHHHHHH----HHhHHHHHhHHH
Q 025508 45 EALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVID----SIKQDYAAKARD 120 (251)
Q Consensus 45 eALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~r~n~e~lskE~Eh~raie----~Lk~~~~~~i~~ 120 (251)
..|+-.+.++......+++....... .-..|..++..........+.--..|+. .|=...-.....
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a----------~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~ 95 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMA----------NQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKAD 95 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56777777777777777766554432 2233444444444444444444445543 355566677778
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhh
Q 025508 121 FEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDV 167 (251)
Q Consensus 121 LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~ev 167 (251)
+++++..+..+.+.-...+.+|+..|...+.-|+.+.++.+.+.+..
T Consensus 96 ~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~ 142 (221)
T PF04012_consen 96 LEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARE 142 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888777766544
No 198
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=41.04 E-value=4.5e+02 Score=27.62 Aligned_cols=166 Identities=22% Similarity=0.264 Sum_probs=102.5
Q ss_pred hHHHHHhhH-----------HHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHh-------------hhhHHhHHHHHH
Q 025508 8 GMESLLSDF-----------DQIYEDFKRAISEVQLLRSSCNAETKRREALEITC-------------NTLKKENERARN 63 (251)
Q Consensus 8 emesLL~~F-----------d~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc-------------~~Lk~dneRLrk 63 (251)
-|.+|+.+| |++--.|..=.+-+..+..+++.-- -=.||+-.. -+...|.|.++.
T Consensus 209 flq~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~vE~v~~~~pP~~-vL~AL~~la~~~~~~i~~~~~~id~~~D~e~lr~ 287 (632)
T PF14817_consen 209 FLQSLLESFPAYGSSHAGHRDQRQASYQQWLSIVEKVLTNHPPNH-VLQALEHLASRRKAEIRSETESIDVRADAEYLRN 287 (632)
T ss_pred HHHHHhcccccCCCCCCCccchhhhHHHHHHhHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHHHHhhccchhhHHHhhh
Confidence 355666666 4555555555566666666654421 112222222 235566677773
Q ss_pred hHHHHHHHHHHHhhhhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 025508 64 SYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLH 143 (251)
Q Consensus 64 lytEsL~~~a~qle~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~ 143 (251)
-+.. ..+-....+....|-+|-...-..+..-+..+.+..--|..+....+.+.+..++... ...++ -+.
T Consensus 288 ~l~d----~s~~~~~lpsv~~Llqe~~a~v~q~~~e~~~l~~eaq~l~~~L~~~~~e~~~~~~~~s----~~~al--~~e 357 (632)
T PF14817_consen 288 QLED----VSDESQALPSVHQLLQEQWAHVQQFLAEEDALNKEAQALSQRLQRLLEEIERRLSGSS----EREAL--ALE 357 (632)
T ss_pred ccCC----CCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc----hhhHH--HHH
Confidence 2222 3344455677788888888888888888888888777788888888888887765542 23333 566
Q ss_pred HHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHH
Q 025508 144 QDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDL 199 (251)
Q Consensus 144 ~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ 199 (251)
.+.+.+++++++|.+ ++|+|+.+.---+++-.+|..|-|+.
T Consensus 358 le~~~l~A~l~~L~s---------------e~q~L~~~~~~r~e~~~~Lq~K~q~I 398 (632)
T PF14817_consen 358 LEVAGLKASLNALRS---------------ECQRLKEAAAERQEALRSLQAKWQRI 398 (632)
T ss_pred HHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999998864 56777776655555554444444433
No 199
>KOG2669 consensus Regulator of nuclear mRNA [RNA processing and modification]
Probab=40.94 E-value=3.1e+02 Score=26.75 Aligned_cols=90 Identities=22% Similarity=0.259 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHHhhhhhh
Q 025508 17 DQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVNDEH 96 (251)
Q Consensus 17 d~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~r~n~e~ 96 (251)
.-+.+.|...+-.+..+.++.+++++...+++..|+.+.++-+.-+.+=.=+++-..+-+.-+.+ -....|+.++..+
T Consensus 165 ~~v~~~~~~~~~l~~a~~s~~~~~~k~~~~~~~~i~~~~~e~~e~~~~~k~~~~~~~e~~~k~le--e~~~lL~e~~~~L 242 (325)
T KOG2669|consen 165 GEVHEKIDSSVELVRALQSLENAASKLDAVLEERIARLPQEVEEVSSLEKITLNSLIESLAKHLE--EEEMLLREVNPRL 242 (325)
T ss_pred cccchhHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHHHHHh
Confidence 34556788889999999999999999999999999999999887665433223433333333322 1233466677777
Q ss_pred hhhHHHHHHHHH
Q 025508 97 LSKEYELRKVID 108 (251)
Q Consensus 97 lskE~Eh~raie 108 (251)
.+.+.+-+.++.
T Consensus 243 ~s~~~~~~~~~~ 254 (325)
T KOG2669|consen 243 AAEEESRRQLVS 254 (325)
T ss_pred cccchhhhhhHH
Confidence 777766333333
No 200
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=40.93 E-value=2.8e+02 Score=25.26 Aligned_cols=63 Identities=16% Similarity=0.292 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhHHHHHhHH---HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhH
Q 025508 101 YELRKVIDSIKQDYAAKAR---DFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQV 163 (251)
Q Consensus 101 ~Eh~raie~Lk~~~~~~i~---~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV 163 (251)
+.+-..+..+...|...-+ ..+.=+..++..+.+-+.+|-+..+.|++-...+.....+.+..
T Consensus 151 ~~~~~~~~~~~~~Y~~~p~Kg~ka~evL~~fl~~~~~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~ 216 (297)
T PF02841_consen 151 QLFLKELDELEKEYEQEPGKGVKAEEVLQEFLQSKESMENSILQADQQLTEKEKEIEEEQAKAEAA 216 (297)
T ss_dssp HHHHHHHHHHHHHHHHSS---TTHHHHHHHHHHHCHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777888877744 36667778888888888899998888888887777665554433
No 201
>PRK01156 chromosome segregation protein; Provisional
Probab=40.72 E-value=4.4e+02 Score=27.41 Aligned_cols=17 Identities=29% Similarity=0.417 Sum_probs=6.9
Q ss_pred HHHHHHHhhhhhhHHHH
Q 025508 225 TLKLKIMKLRKENEILK 241 (251)
Q Consensus 225 tLKqKiMKLRKENE~LK 241 (251)
.|++++..++++-+.|+
T Consensus 427 ~l~~~i~~l~~~~~el~ 443 (895)
T PRK01156 427 SLNQRIRALRENLDELS 443 (895)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444433333
No 202
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=40.72 E-value=94 Score=29.77 Aligned_cols=47 Identities=15% Similarity=0.268 Sum_probs=26.9
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhh
Q 025508 113 DYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKK 159 (251)
Q Consensus 113 ~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~ 159 (251)
.....|.++|.+|+.+......-+.++..+...+..+.+.++-|-++
T Consensus 141 ~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnr 187 (370)
T PF02994_consen 141 SLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENR 187 (370)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566777777777766655555555555555555555555555444
No 203
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=40.66 E-value=3.1e+02 Score=25.65 Aligned_cols=47 Identities=26% Similarity=0.231 Sum_probs=39.2
Q ss_pred HHHhh-hhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHH
Q 025508 73 ADQLE-RKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKAR 119 (251)
Q Consensus 73 a~qle-~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~ 119 (251)
.+.++ |-+||++...++++.-.++.+-+.+..+.+..|..-|+....
T Consensus 83 ~~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~ 130 (333)
T PF05816_consen 83 KNSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWE 130 (333)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33443 579999999999999999999999999998888877766543
No 204
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=40.04 E-value=3.8e+02 Score=28.55 Aligned_cols=29 Identities=24% Similarity=0.518 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhhHH
Q 025508 136 EATISNLHQDLAAHKMHMQTLAKKLDQVK 164 (251)
Q Consensus 136 Ea~I~qL~~dLaahk~hid~L~~~LeqV~ 164 (251)
+-.|..|+..|..-+.-+++|..+|.+..
T Consensus 480 ~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 480 DRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 205
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=39.97 E-value=1.1e+02 Score=23.70 Aligned_cols=90 Identities=26% Similarity=0.332 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHhh
Q 025508 135 NEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHN 214 (251)
Q Consensus 135 ~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekElli~ktK~~eqq 214 (251)
.+.-...+..+++-.+..++.|...+-+..-+. .+-=.+++...+|+. |...=+..+.-|+.
T Consensus 10 ~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~Ged-----L~~Ls~~eL~~LE~~--------Le~aL~~VR~rK~~----- 71 (100)
T PF01486_consen 10 WDSQHEELQQEIAKLRKENESLQKELRHLMGED-----LESLSLKELQQLEQQ--------LESALKRVRSRKDQ----- 71 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-----ccccchHHHHHHHHh--------hhhhHHHHHHHHHH-----
Confidence 345566777888888888888877666655432 111122333333322 21111111222222
Q ss_pred hhhhhhhhHHHHHHHHHhhhhhhHHHHhhhh
Q 025508 215 RDLTSVRSVETLKLKIMKLRKENEILKRKLN 245 (251)
Q Consensus 215 rD~tS~~hVetLKqKiMKLRKENE~LKR~l~ 245 (251)
.=..++++|+.|...|..+|..|+.++.
T Consensus 72 ---~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 72 ---LLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2235789999999999999999999875
No 206
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=39.36 E-value=2.2e+02 Score=23.62 Aligned_cols=89 Identities=25% Similarity=0.283 Sum_probs=58.8
Q ss_pred HHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHH--HHHHHHHHhhhhHhhhHHHHHHHhhhhhhhhhHHHHH
Q 025508 27 ISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTE--SLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELR 104 (251)
Q Consensus 27 ~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytE--sL~~~a~qle~rtk~qsLkEEL~r~n~e~lskE~Eh~ 104 (251)
=.|+++|+.-+..=...|..+..-+-.|-.+|+.++..-.+ .|..=... -..+|+.+-+=++--.+++ +|.+
T Consensus 29 E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~--l~~ry~t~LellGEK~E~v----eEL~ 102 (120)
T PF12325_consen 29 EGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEE--LQQRYQTLLELLGEKSEEV----EELR 102 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcchHHHH----HHHH
Confidence 36888888888888888888888888888888888554322 22222222 2345556655555444443 5778
Q ss_pred HHHHHHhHHHHHhHHHH
Q 025508 105 KVIDSIKQDYAAKARDF 121 (251)
Q Consensus 105 raie~Lk~~~~~~i~~L 121 (251)
..|.-+|.=|..-|..|
T Consensus 103 ~Dv~DlK~myr~Qi~~l 119 (120)
T PF12325_consen 103 ADVQDLKEMYREQIDQL 119 (120)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88888888887776654
No 207
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=39.12 E-value=4.6e+02 Score=27.19 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhh
Q 025508 136 EATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKY 171 (251)
Q Consensus 136 Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY 171 (251)
|.-|.+|..-+.+-...|..|....+.++.....+|
T Consensus 393 e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~ 428 (594)
T PF05667_consen 393 EENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEY 428 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 556677777777777777777777777666555444
No 208
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=38.63 E-value=1.9e+02 Score=22.59 Aligned_cols=94 Identities=21% Similarity=0.271 Sum_probs=57.8
Q ss_pred hhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhh
Q 025508 93 NDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYN 172 (251)
Q Consensus 93 n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~ 172 (251)
+.|+.+++.+.+...+++...+ +....+|.++..+.++++-.+ +..-|---|+|+|..-+--+.. .-+|=.
T Consensus 2 ~~EL~~~~~a~~~~~~~~~~k~-~~~~~lE~k~~rl~~Ek~kad-------qkyfa~mr~~d~l~~e~k~L~~-~~~Ks~ 72 (96)
T PF08647_consen 2 QTELVSMEQAFKELSEQADKKV-KELTILEQKKLRLEAEKAKAD-------QKYFAAMRSKDALDNEMKKLNT-QLSKSS 72 (96)
T ss_pred chHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHH-HHHHhH
Confidence 5678888888888777776554 567788999988888866544 4455555556655544333222 123444
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHHHHH
Q 025508 173 LEIQDLKDCLLLEQEEKNELNKRVQDLEKE 202 (251)
Q Consensus 173 ~EIqdLkD~L~~EqEeKn~l~~kLq~~ekE 202 (251)
.-|..|+| --+++.++|.++|++
T Consensus 73 ~~i~~L~~-------~E~~~~~~l~~~Eke 95 (96)
T PF08647_consen 73 ELIEQLKE-------TEKEFVRKLKNLEKE 95 (96)
T ss_pred HHHHHHHH-------HHHHHHHHHHHhhcc
Confidence 44556665 224556666666665
No 209
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=38.35 E-value=5e+02 Score=27.37 Aligned_cols=112 Identities=16% Similarity=0.261 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhh------hHHHh--HHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHH
Q 025508 18 QIYEDFKRAISEVQLLRSSCN------AETKR--REALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEEL 89 (251)
Q Consensus 18 ~i~e~fk~g~~Eiq~Lrs~~~------aE~k~--ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL 89 (251)
.||.+|-.=-.-||=||+.+. .++.. --.....|..|..--++|.+-|.-. ...+.+||.||
T Consensus 196 sl~~~ll~L~arm~PLraSLdfLP~Ri~~F~~ra~~~fp~a~e~L~~r~~~L~~k~~~L----------~~e~~~LK~EL 265 (683)
T PF08580_consen 196 SLYSSLLALFARMQPLRASLDFLPMRIEEFQSRAESIFPSACEELEDRYERLEKKWKKL----------EKEAESLKKEL 265 (683)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHh
Confidence 445556555555666666652 22222 3456667777877777777777532 23456677777
Q ss_pred H---------hhhhhhhhhHHHHHHHHHHHhHH------------HHHhHHHHHHHHHHHHHHh--hhhHHHH
Q 025508 90 K---------RVNDEHLSKEYELRKVIDSIKQD------------YAAKARDFEDQIRSLMLEK--ATNEATI 139 (251)
Q Consensus 90 ~---------r~n~e~lskE~Eh~raie~Lk~~------------~~~~i~~LE~qi~~~~~q~--at~Ea~I 139 (251)
. .+++|+-.|=++..+.+.-++.. ...+|+..++++.+..-=. |..++.|
T Consensus 266 iedRW~~vFr~l~~q~~~m~esver~~~kl~~~~~~~~~~~~~~~l~~~i~s~~~k~~~~~~~I~ka~~~sIi 338 (683)
T PF08580_consen 266 IEDRWNIVFRNLGRQAQKMCESVERSLSKLQEAIDSGIHLDNPSKLSKQIESKEKKKSHYFPAIYKARVLSII 338 (683)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 4 46677777777777777766666 4566777777776665544 5555544
No 210
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=38.30 E-value=6.8e+02 Score=28.85 Aligned_cols=57 Identities=12% Similarity=0.158 Sum_probs=32.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhh
Q 025508 112 QDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVE 168 (251)
Q Consensus 112 ~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve 168 (251)
..+..+-..+-+.+.......+--..-++..+.++-.-.+..++|-++.+.+...|+
T Consensus 468 ~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e 524 (1293)
T KOG0996|consen 468 DSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVE 524 (1293)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444445555555666666666666666777777666666554
No 211
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=37.99 E-value=2.4e+02 Score=23.65 Aligned_cols=161 Identities=21% Similarity=0.275 Sum_probs=104.8
Q ss_pred hhhHhhhHHHHHHHhhhhhhhhhHH----HHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHH
Q 025508 77 ERKAKCQSLKEELKRVNDEHLSKEY----ELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMH 152 (251)
Q Consensus 77 e~rtk~qsLkEEL~r~n~e~lskE~----Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~h 152 (251)
+.|.++-+|+-.+.++..++..+|+ =|--.-++|+-+...=...+|.+=..+..-+...-.++ +-|+-++.-
T Consensus 10 ~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v----~~L~h~keK 85 (177)
T PF13870_consen 10 KLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTV----QILTHVKEK 85 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 4577888899999999999888876 36677888888877777777777666666665544444 344556666
Q ss_pred HHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhh-hhhhHHHHHHHHH
Q 025508 153 MQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLT-SVRSVETLKLKIM 231 (251)
Q Consensus 153 id~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekElli~ktK~~eqqrD~t-S~~hVetLKqKiM 231 (251)
..++...+..+..+... ....+..+++.|.....+.+.+.+....+....-+..+.-+ .+|.. ..--|+.|+..|-
T Consensus 86 l~~~~~~~~~l~~~l~~-~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~l--l~Dy~~~~~~~~~l~~~i~ 162 (177)
T PF13870_consen 86 LHFLSEELERLKQELKD-REEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPAL--LRDYDKTKEEVEELRKEIK 162 (177)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH--HHHHHHHHHHHHHHHHHHH
Confidence 66666666666655543 35578888999999999999888888887765444322111 11211 2233445555555
Q ss_pred hhhhhhHHHHhhh
Q 025508 232 KLRKENEILKRKL 244 (251)
Q Consensus 232 KLRKENE~LKR~l 244 (251)
.|+...+++-.++
T Consensus 163 ~l~rk~~~l~~~i 175 (177)
T PF13870_consen 163 ELERKVEILEMRI 175 (177)
T ss_pred HHHHHHHHHHHhh
Confidence 5555555554444
No 212
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=37.88 E-value=6.4e+02 Score=28.43 Aligned_cols=50 Identities=14% Similarity=0.194 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHh
Q 025508 117 KARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFD 166 (251)
Q Consensus 117 ~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~e 166 (251)
...+|+.+++.+-.+.+.....+..-+..+...+..++....+++.....
T Consensus 334 eL~el~~ql~~~~~~a~~~~~~~~~a~~~~e~~~~~~~~~~~r~~~~~~~ 383 (1353)
T TIGR02680 334 ELERARADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAERE 383 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777777777777666666666666666666666665555
No 213
>PF15294 Leu_zip: Leucine zipper
Probab=37.48 E-value=3.7e+02 Score=25.63 Aligned_cols=82 Identities=26% Similarity=0.388 Sum_probs=44.1
Q ss_pred HHhHHHHHHHHHHHHHH--hhhh--HHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhh--hhHHHHHHHHHH
Q 025508 115 AAKARDFEDQIRSLMLE--KATN--EATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQ--DLKDCLLLEQEE 188 (251)
Q Consensus 115 ~~~i~~LE~qi~~~~~q--~at~--Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIq--dLkD~L~~EqEe 188 (251)
...+.+||+++..+-.+ ++.. ++--.-|..+|..+|.-+-.....|.....+.+-||+.=-+ -+|+.|.-=.+.
T Consensus 189 ~q~l~dLE~k~a~lK~e~ek~~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLekKfqqT~ay~NMk~~ltkKn~Q 268 (278)
T PF15294_consen 189 AQDLSDLENKMAALKSELEKALQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEKKFQQTAAYRNMKEILTKKNEQ 268 (278)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHHHhCccHHHHHhHHHHHhccHH
Confidence 34555666665544322 2222 22345566777777777777777777777777777654322 244444444444
Q ss_pred hHHHHHHH
Q 025508 189 KNELNKRV 196 (251)
Q Consensus 189 Kn~l~~kL 196 (251)
-.+|.++|
T Consensus 269 iKeLRkrl 276 (278)
T PF15294_consen 269 IKELRKRL 276 (278)
T ss_pred HHHHHHHh
Confidence 44444443
No 214
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.44 E-value=1.9e+02 Score=22.79 Aligned_cols=47 Identities=26% Similarity=0.347 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHH
Q 025508 119 RDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKF 165 (251)
Q Consensus 119 ~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~ 165 (251)
-.||++|-.+....|--|-||.-|..-|+.+.--|+-+...|..++.
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~ 50 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTE 50 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777777777777777666666655555555443
No 215
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=36.91 E-value=4.4e+02 Score=26.28 Aligned_cols=67 Identities=15% Similarity=0.332 Sum_probs=34.6
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHH
Q 025508 114 YAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDC 181 (251)
Q Consensus 114 ~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~ 181 (251)
|.....++-..+..+..+...--..+.....++...-..++.+..||..+.. .--||...+.++...
T Consensus 264 ~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~-LkrKyg~s~e~l~~~ 330 (563)
T TIGR00634 264 IDGSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKR-LKRKYGASVEEVLEY 330 (563)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHH
Confidence 4455555555555555544433334444444444445555666666665443 444666555555443
No 216
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=36.85 E-value=1.3e+02 Score=25.05 Aligned_cols=58 Identities=22% Similarity=0.259 Sum_probs=46.0
Q ss_pred hHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 025508 83 QSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAA 148 (251)
Q Consensus 83 qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaa 148 (251)
+.+|||.+..+.|+-.| +.|.++|..+|...++=++.+..+.-..+.+-++-++-++.
T Consensus 38 ~~lkEEi~eLK~ElqRK--------e~Ll~Kh~~kI~~w~~lL~d~~~~~k~~~evp~e~~~~~~e 95 (106)
T PF11594_consen 38 QVLKEEINELKEELQRK--------EQLLQKHYEKIDYWEKLLSDAQNQHKVPDEVPPEARQRLAE 95 (106)
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhhccCchhccchHHHHHHh
Confidence 46888888888666333 35668999999999999999998888888888887777664
No 217
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=36.62 E-value=3.9e+02 Score=25.63 Aligned_cols=66 Identities=15% Similarity=0.252 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhH---------HHhhhhhhhhhhhhhHHHHH
Q 025508 118 ARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQV---------KFDVEMKYNLEIQDLKDCLL 183 (251)
Q Consensus 118 i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV---------~~eve~kY~~EIqdLkD~L~ 183 (251)
.++||.++...+.+.+.-|..|..|+.-+.+-...+.---.||+-. ++.++..-..|+..|+..+.
T Consensus 260 k~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~ 334 (384)
T PF03148_consen 260 KNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKELRESIE 334 (384)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999999999988888877766666644 44555555568888777654
No 218
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=36.32 E-value=1.7e+02 Score=23.56 Aligned_cols=45 Identities=22% Similarity=0.251 Sum_probs=23.8
Q ss_pred HhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhh
Q 025508 110 IKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKL 160 (251)
Q Consensus 110 Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~L 160 (251)
-+-+|+++|+.|=. ++ -+..+.-|..|..++.+...-+.-|..+|
T Consensus 28 YssKHE~KV~~LKk--sY----e~rwek~v~~L~~e~~~l~~E~e~L~~~l 72 (87)
T PF12709_consen 28 YSSKHETKVKALKK--SY----EARWEKKVDELENENKALKRENEQLKKKL 72 (87)
T ss_pred HhhHHHHHHHHHHh--hH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888877721 11 13455566666666555544444333333
No 219
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=36.06 E-value=5.3e+02 Score=26.93 Aligned_cols=66 Identities=27% Similarity=0.325 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhhhhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhh
Q 025508 65 YTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKA 133 (251)
Q Consensus 65 ytEsL~~~a~qle~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~a 133 (251)
++|||..+ |+++-.=++.||.|--..+.++-.|-.+-.. +..=|......|.+||.+|+.+..+.+
T Consensus 2 l~e~l~ql--q~Erd~ya~~lk~e~a~~qqr~~qmseev~~-L~eEk~~~~~~V~eLE~sL~eLk~q~~ 67 (617)
T PF15070_consen 2 LMESLKQL--QAERDQYAQQLKEESAQWQQRMQQMSEEVRT-LKEEKEHDISRVQELERSLSELKNQMA 67 (617)
T ss_pred hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35566555 3444555566666665555555555544432 222344455668889988888776665
No 220
>PRK11415 hypothetical protein; Provisional
Probab=36.02 E-value=1.9e+02 Score=21.86 Aligned_cols=65 Identities=14% Similarity=0.111 Sum_probs=44.9
Q ss_pred hhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHhhHHHHHHHhhh
Q 025508 82 CQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKA-TNEATISNLHQDLAAHKMHMQTLAKKL 160 (251)
Q Consensus 82 ~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~a-t~Ea~I~qL~~dLaahk~hid~L~~~L 160 (251)
|..+=.+|+.-+.++.+.-.+| ++|+.+|..+....+ +++..|.+|+.+=.+.|+-|..+-...
T Consensus 5 ~~d~I~~Lk~~D~~F~~L~~~h---------------~~Ld~~I~~lE~~~~~~~d~~i~~LKk~KL~LKDeI~~~L~~~ 69 (74)
T PRK11415 5 YRDLISRLKNENPRFMSLFDKH---------------NKLDHEIARKEGSDGRGYNAEVVRMKKQKLQLKDEMLKILQQE 69 (74)
T ss_pred HHHHHHHHHhcCHHHHHHHHHH---------------HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 4444455555555555544444 457777777766555 688899999999999999998877665
Q ss_pred h
Q 025508 161 D 161 (251)
Q Consensus 161 e 161 (251)
+
T Consensus 70 ~ 70 (74)
T PRK11415 70 S 70 (74)
T ss_pred h
Confidence 4
No 221
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=35.84 E-value=4.4e+02 Score=26.02 Aligned_cols=75 Identities=12% Similarity=0.178 Sum_probs=30.3
Q ss_pred HHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHH
Q 025508 106 VIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDC 181 (251)
Q Consensus 106 aie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~ 181 (251)
.|+.-+..|-.++++|..+|..+..-.......+.. .....+...-+++|.+.|..=....-.-|..|+..|+.+
T Consensus 368 ~v~~Er~~~~~~l~~~~~~~~~le~~~~~~~~~~~~-~~~~~~l~~a~~~l~~~l~~~~~~~~~p~~~el~~l~~~ 442 (582)
T PF09731_consen 368 KVEQERNGRLAKLAELNSRLKALEEALDARSEAEDE-NRRAQQLWLAVDALKSALDSGNAGSPRPFEDELRALKEL 442 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHh
Confidence 344444455555555555555544333322222211 011111112233344433322221124566666666655
No 222
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=35.80 E-value=3e+02 Score=24.04 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=14.8
Q ss_pred CCCCChhhHHHHHhhHHHHHH
Q 025508 1 MAATSDDGMESLLSDFDQIYE 21 (251)
Q Consensus 1 MaatsDEemesLL~~Fd~i~e 21 (251)
++|||..|+--|...+|..-+
T Consensus 27 ~~p~tR~dVi~L~e~Ld~~L~ 47 (189)
T PF10211_consen 27 SAPATRQDVIQLQEWLDKMLQ 47 (189)
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 467888888877777775444
No 223
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=35.20 E-value=3.5e+02 Score=24.58 Aligned_cols=146 Identities=16% Similarity=0.224 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhh
Q 025508 94 DEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNL 173 (251)
Q Consensus 94 ~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~ 173 (251)
.++..++.+.+++-.-| ..+...+..|+.+.+.+..+...=+.-...+.......+....+...-=.+...++. .|..
T Consensus 12 ~rL~q~eee~~~a~~~L-~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~-e~~~ 89 (246)
T PF00769_consen 12 ERLRQMEEEMRRAQEAL-EESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELR-EAEA 89 (246)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhhh--hHHH--------------------------
Q 025508 174 EIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVR--SVET-------------------------- 225 (251)
Q Consensus 174 EIqdLkD~L~~EqEeKn~l~~kLq~~ekElli~ktK~~eqqrD~tS~~--hVet-------------------------- 225 (251)
+|..|.....---.|...+..+|..++..+.-.+.++..-..-.+.+. ||.+
T Consensus 90 ~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~~~~~~~~p~~~~v~~~~~~~~~~~~~~~~~~s~dl~~~~~~ 169 (246)
T PF00769_consen 90 EIARLEEESERKEEEAEELQEELEEAREDEEEAKEELLEVMSAPPPPPHHPVAEPDEGDEDENDEENSEYSADLETDGDM 169 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTTS--GGGS------------------EEEE---T-T-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCCCCCCCccccccccccccccccccccc
Q ss_pred -----------------HHHHHHhhhhhhHHHH
Q 025508 226 -----------------LKLKIMKLRKENEILK 241 (251)
Q Consensus 226 -----------------LKqKiMKLRKENE~LK 241 (251)
|.+++.-|+.|.+.+|
T Consensus 170 ~~~sEeeR~t~~EKnk~lq~QL~~L~~EL~~~k 202 (246)
T PF00769_consen 170 KDRSEEERVTYAEKNKRLQEQLKELKSELEQLK 202 (246)
T ss_dssp -TCGGGC---HHHH-HHHHHHHHHHHHHHHTTB
T ss_pred cchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
No 224
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=33.87 E-value=2.9e+02 Score=23.34 Aligned_cols=34 Identities=15% Similarity=0.301 Sum_probs=18.6
Q ss_pred hHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhH
Q 025508 79 KAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQ 112 (251)
Q Consensus 79 rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~ 112 (251)
..|...++.|+..+.......+.+.....+.++.
T Consensus 162 ~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~ 195 (236)
T PF09325_consen 162 QDKVEQAENEIEEAERRVEQAKDEFEEISENIKK 195 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666655555555555544444444
No 225
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=33.55 E-value=2.7e+02 Score=22.78 Aligned_cols=88 Identities=20% Similarity=0.292 Sum_probs=57.9
Q ss_pred HHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHH
Q 025508 103 LRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEA--TISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKD 180 (251)
Q Consensus 103 h~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea--~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD 180 (251)
.+++|..=+.....-..+||.-=+.+ --|++|| -|..|+.+- +-++|=+.-.-++..+=-.-..-.|+.|+|
T Consensus 4 Lr~~v~~er~~~~~L~~ELEeER~Aa--AsAA~EAMaMI~RLQ~EK----Aa~~mEA~Qy~Rm~EEk~~yD~e~ie~L~~ 77 (94)
T PF04576_consen 4 LRRAVEAERKALAALYAELEEERSAA--ASAASEAMAMILRLQEEK----AAVEMEARQYQRMAEEKAEYDQEAIESLKD 77 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 35556666666666667777654443 3477787 788888774 445555555555555555556678999999
Q ss_pred HHHHHHHHhHHHHHHH
Q 025508 181 CLLLEQEEKNELNKRV 196 (251)
Q Consensus 181 ~L~~EqEeKn~l~~kL 196 (251)
.|.-=-.++.+|...|
T Consensus 78 ~l~~rE~e~~~Le~el 93 (94)
T PF04576_consen 78 ILYKREKEIQSLEAEL 93 (94)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9887666777666554
No 226
>PF13514 AAA_27: AAA domain
Probab=33.17 E-value=6.6e+02 Score=27.26 Aligned_cols=244 Identities=16% Similarity=0.247 Sum_probs=0.0
Q ss_pred CCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHH---------------
Q 025508 2 AATSDDGMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYT--------------- 66 (251)
Q Consensus 2 aatsDEemesLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklyt--------------- 66 (251)
++..+.++..++.-=..+.+.+.........|...+..=....+.++..+..+....+..+.-|.
T Consensus 647 ~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~gL~~~~~~~ 726 (1111)
T PF13514_consen 647 ALGPAEELAALLEEAEALLEEWEQAAARREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQEALAELGLPADASPE 726 (1111)
T ss_pred hCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHH
Q ss_pred ---HHHHHHHHHhhhhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHH-HHHHHHHHHHHHhhhhHHHHHHH
Q 025508 67 ---ESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKAR-DFEDQIRSLMLEKATNEATISNL 142 (251)
Q Consensus 67 ---EsL~~~a~qle~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~-~LE~qi~~~~~q~at~Ea~I~qL 142 (251)
+.|..+..=......+..+...+..+....-..+.....-+..+......... ..=..+...+.+-......+..+
T Consensus 727 ~~~~~l~~l~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~~~~l 806 (1111)
T PF13514_consen 727 EALEALELLEELREALAEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAREAQEERERL 806 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhHHHHHHHhhhhhHHHhhhhhhh----hhhhhhHHHHHHHHHHhHHHHHHHHHHHHHH-HHhhhhHHHhhhhh
Q 025508 143 HQDLAAHKMHMQTLAKKLDQVKFDVEMKYN----LEIQDLKDCLLLEQEEKNELNKRVQDLEKEL-LMNRTKMAEHNRDL 217 (251)
Q Consensus 143 ~~dLaahk~hid~L~~~LeqV~~eve~kY~----~EIqdLkD~L~~EqEeKn~l~~kLq~~ekEl-li~ktK~~eqqrD~ 217 (251)
..++......++.+...+.....+...-+. ....+|..+...-.+ ...+..++..++..+ .+....-.+....-
T Consensus 807 ~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~a~~~~~e~l~~~~~~~~~-~~~l~~~~~~~~~~l~~~~~~~~~~~l~~e 885 (1111)
T PF13514_consen 807 QEQLEELEEELEQAEEELEELEAELAELLEQAGVEDEEELREAEERAEE-RRELREELEDLERQLERQADGLDLEELEEE 885 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCcccHHHHHHH
Q ss_pred hhhhhHHHHHHHHHhhhhhhHHHHhhhhh
Q 025508 218 TSVRSVETLKLKIMKLRKENEILKRKLNS 246 (251)
Q Consensus 218 tS~~hVetLKqKiMKLRKENE~LKR~l~~ 246 (251)
....-...|...+-.+..+.+.+..++..
T Consensus 886 ~~~~d~~~l~~~l~~l~~~l~~l~~~~~~ 914 (1111)
T PF13514_consen 886 LEELDPDELEAELEELEEELEELEEELEE 914 (1111)
T ss_pred hhccCHHHHHHHHHHHHHHHHHHHHHHHH
No 227
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=32.98 E-value=2.2e+02 Score=21.74 Aligned_cols=67 Identities=22% Similarity=0.249 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHhhhhhH-HHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHH
Q 025508 135 NEATISNLHQDLAAHKMHMQTLAKKLDQV-KFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKE 202 (251)
Q Consensus 135 ~Ea~I~qL~~dLaahk~hid~L~~~LeqV-~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekE 202 (251)
-|.+|+.|+.+==..|-.|-.|..+|.+. ...++.=++.-|+ ||..+..=+-+-....+.|..+++.
T Consensus 5 qe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNie-LKve~~~L~~el~~~~~~l~~a~~~ 72 (75)
T PF07989_consen 5 QEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIE-LKVEVESLKRELQEKKKLLKEAEKA 72 (75)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888888888854 3344444544444 7766665555666666666666554
No 228
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=32.77 E-value=2e+02 Score=25.64 Aligned_cols=50 Identities=20% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHh
Q 025508 11 SLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNS 64 (251)
Q Consensus 11 sLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrkl 64 (251)
..+++|-..+.+|.+...|...|+ .|...=++.-.....++.||+||+++
T Consensus 59 ~~~~~~~~~~~~~~~l~~en~~L~----~e~~~l~~~~~~~~~l~~en~~L~~l 108 (276)
T PRK13922 59 EFVSGVFESLASLFDLREENEELK----KELLELESRLQELEQLEAENARLREL 108 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
No 229
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=32.58 E-value=2.9e+02 Score=22.99 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=12.1
Q ss_pred HHHHHHhhhhHHhHHHHHHhHHHHH
Q 025508 45 EALEITCNTLKKENERARNSYTESL 69 (251)
Q Consensus 45 eALE~tc~~Lk~dneRLrklytEsL 69 (251)
..++..+.++..+...++..+....
T Consensus 98 ~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 98 DQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3344555555555555554444443
No 230
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=32.57 E-value=3.2e+02 Score=26.48 Aligned_cols=92 Identities=18% Similarity=0.259 Sum_probs=64.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHH
Q 025508 9 MESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEE 88 (251)
Q Consensus 9 mesLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEE 88 (251)
.+.=+.+|-++.++--++++++.+.+...-...-+=..||++..+|-.-.+-=...|-+++.|=+. ++-|
T Consensus 191 kekEl~sfK~sEeeNar~V~kAnsVldRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q----------~rae 260 (311)
T PF04642_consen 191 KEKELESFKRSEEENARAVEKANSVLDRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQ----------ARAE 260 (311)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHH----------HHHH
Confidence 445567788888888899999999988776666666778888888876555556678887776543 4566
Q ss_pred HHhhhhhhhhhHHHHHHHHHHH
Q 025508 89 LKRVNDEHLSKEYELRKVIDSI 110 (251)
Q Consensus 89 L~r~n~e~lskE~Eh~raie~L 110 (251)
|+-..+.+.-||++.---|-.-
T Consensus 261 L~acEEkl~kmeE~Qa~~l~~a 282 (311)
T PF04642_consen 261 LNACEEKLKKMEEEQAEMLRAA 282 (311)
T ss_pred HHHHHHHHhcccHHHHHHHHHH
Confidence 6666666777776654444333
No 231
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=32.54 E-value=2.4e+02 Score=23.25 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=18.9
Q ss_pred HHHHHHHhhhhHHhHHHHHHhHHHHHH
Q 025508 44 REALEITCNTLKKENERARNSYTESLE 70 (251)
Q Consensus 44 ReALE~tc~~Lk~dneRLrklytEsL~ 70 (251)
|+.|...-..|..-.+.|++||.++..
T Consensus 92 K~~L~~ak~~L~~~~~eL~~L~~~s~~ 118 (142)
T PF04048_consen 92 KESLQEAKSLLGCRREELKELWQRSQE 118 (142)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 556666666676777788888877654
No 232
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=32.42 E-value=2.5e+02 Score=22.12 Aligned_cols=49 Identities=37% Similarity=0.428 Sum_probs=36.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhhhhHHHHHHHHHhhhhhhHHHHhhh
Q 025508 183 LLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIMKLRKENEILKRKL 244 (251)
Q Consensus 183 ~~EqEeKn~l~~kLq~~ekElli~ktK~~eqqrD~tS~~hVetLKqKiMKLRKENE~LKR~l 244 (251)
.++.+++..|-+....+|.-|... ...|++.|.--.||+.||+.|.-=+
T Consensus 12 ~~~~e~k~~Li~ei~~LQ~sL~~L-------------~~Rve~Vk~E~~kL~~EN~~Lq~YI 60 (80)
T PF10224_consen 12 KLEKEEKEELIQEILELQDSLEAL-------------SDRVEEVKEENEKLESENEYLQQYI 60 (80)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888888887765422 2347888899999999999987544
No 233
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=31.80 E-value=2.7e+02 Score=22.54 Aligned_cols=37 Identities=30% Similarity=0.298 Sum_probs=30.9
Q ss_pred hhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhh
Q 025508 37 CNAETKRREALEITCNTLKKENERARNSYTESLENLADQLE 77 (251)
Q Consensus 37 ~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle 77 (251)
+..|..+|+.++.....+.++.|.| |.+||.=|+.|=
T Consensus 3 l~~e~~~r~~ae~~~~~ie~ElEeL----TasLFeEAN~MV 39 (100)
T PF06428_consen 3 LEEERERREEAEQEKEQIESELEEL----TASLFEEANKMV 39 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 5678899999999999999999998 567777776663
No 234
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=31.56 E-value=2.2e+02 Score=21.24 Aligned_cols=49 Identities=24% Similarity=0.311 Sum_probs=33.6
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhh
Q 025508 113 DYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLD 161 (251)
Q Consensus 113 ~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~Le 161 (251)
+++-.+..||..++-+..--.++.++|.+|..-+.-..-.|=+|+++.|
T Consensus 5 ~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~mv~L~kKiD 53 (57)
T PF02346_consen 5 DIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYMVILAKKID 53 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556667777777777777778888888887766655555555665544
No 235
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=31.32 E-value=6.9e+02 Score=26.87 Aligned_cols=105 Identities=18% Similarity=0.230 Sum_probs=70.3
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHH
Q 025508 113 DYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNEL 192 (251)
Q Consensus 113 ~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l 192 (251)
.+.-.|+.||.|.+.+.-.-....+-+..+.+-+.-|+.++.-+++.++...-.++ +++-...++..++.-=-.+...+
T Consensus 521 ~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~e-k~~~~le~i~~~~~e~~~ele~~ 599 (698)
T KOG0978|consen 521 KLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELE-KSEAKLEQIQEQYAELELELEIE 599 (698)
T ss_pred HHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777788887777777777777777777788888887777777776655543 45555566666655555555666
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhhhhh
Q 025508 193 NKRVQDLEKELLMNRTKMAEHNRDLT 218 (251)
Q Consensus 193 ~~kLq~~ekElli~ktK~~eqqrD~t 218 (251)
..+.+-+|-|+-+.+-|+.......+
T Consensus 600 ~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 600 KFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccc
Confidence 66666666666666666655554443
No 236
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=31.06 E-value=2.3e+02 Score=21.21 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=13.7
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHH
Q 025508 174 EIQDLKDCLLLEQEEKNELNKRVQD 198 (251)
Q Consensus 174 EIqdLkD~L~~EqEeKn~l~~kLq~ 198 (251)
+|..|+.-++..++|-.--|.+|-|
T Consensus 25 dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 25 DVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555565555555554
No 237
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=30.99 E-value=2.1e+02 Score=26.55 Aligned_cols=60 Identities=22% Similarity=0.247 Sum_probs=41.3
Q ss_pred ChhhHHHHHhhHHHHHHHHH--HHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHh
Q 025508 5 SDDGMESLLSDFDQIYEDFK--RAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNS 64 (251)
Q Consensus 5 sDEemesLL~~Fd~i~e~fk--~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrkl 64 (251)
+|-+.++||+-+..|-.-|- .+.--|.+||..|+.=+.-=..||..++.-+...+++.+.
T Consensus 155 ~d~dvevLL~~ae~L~~vYP~~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~ 216 (259)
T PF08657_consen 155 EDVDVEVLLRGAEKLCNVYPLPGAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRS 216 (259)
T ss_pred ccCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56788999999999988887 5666777888887765555555555555555555444443
No 238
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=30.78 E-value=6.9e+02 Score=26.73 Aligned_cols=49 Identities=22% Similarity=0.415 Sum_probs=32.5
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhh
Q 025508 114 YAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEM 169 (251)
Q Consensus 114 ~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~ 169 (251)
|...+-.++.++..+..+ +..|+..+-..+.-|.+|.++|++...+++.
T Consensus 420 ~~~~i~~~~~~ve~l~~e-------~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~ 468 (652)
T COG2433 420 YEKRIKKLEETVERLEEE-------NSELKRELEELKREIEKLESELERFRREVRD 468 (652)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666555444 4556666666677788888888888887764
No 239
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=30.77 E-value=1.9e+02 Score=21.34 Aligned_cols=40 Identities=30% Similarity=0.380 Sum_probs=22.8
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHH
Q 025508 114 YAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHM 153 (251)
Q Consensus 114 ~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hi 153 (251)
+++++..++..++.+....+.+|.-|..+..+|...++-+
T Consensus 11 ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~ 50 (71)
T PF10779_consen 11 IETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNT 50 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555556666666666666666555443
No 240
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=30.72 E-value=5.3e+02 Score=25.37 Aligned_cols=151 Identities=17% Similarity=0.211 Sum_probs=82.5
Q ss_pred HHhhHHHHHHH-HHHHHHHHHHHHhhhh-----hHHHhHHHHHHHh--------hhhHHhHHHHHHhHHHHHHHHHHHhh
Q 025508 12 LLSDFDQIYED-FKRAISEVQLLRSSCN-----AETKRREALEITC--------NTLKKENERARNSYTESLENLADQLE 77 (251)
Q Consensus 12 LL~~Fd~i~e~-fk~g~~Eiq~Lrs~~~-----aE~k~ReALE~tc--------~~Lk~dneRLrklytEsL~~~a~qle 77 (251)
.+..+..+|+. +..+...++.+|.... ++..-.+.+...| .....+.+.+.+.+.+.-.....+..
T Consensus 265 ~~~~lr~~~E~~~~ec~~~ve~~k~~L~~~~~~~~eea~~lv~~~~~plv~~~q~~~e~~le~l~~~~E~~a~~~~~~~~ 344 (473)
T PF14643_consen 265 CMEKLRALYEKICQECLALVEKLKQELLDWKACTEEEAEELVNPEFLPLVGELQSEFEEELEKLDKSFEELAKQTEAQSE 344 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443 2345666666666322 2333333344443 33344455555555544443333332
Q ss_pred hh----HhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHH
Q 025508 78 RK----AKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHM 153 (251)
Q Consensus 78 ~r----tk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hi 153 (251)
.= ...-.+|++-. ..+...+.++...+++.+++|....+.+|+.+.-++-..+. .++- .+.+.|.
T Consensus 345 ~L~~f~~~~~~lwd~h~---~~l~~~e~~l~~~l~~~r~~~~~~~q~~E~~Ld~~~d~lRq-~s~e-------e~L~~~l 413 (473)
T PF14643_consen 345 DLFKFFQEAAQLWDEHR---KKLSKQEEELEKRLEQCREKHDQENQEKEAKLDIALDRLRQ-ASSE-------EKLKEHL 413 (473)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-CCCH-------HHHHHHH
Confidence 22 22234555443 56777899999999999999999999999998766544322 1112 2344455
Q ss_pred HHHHhhhhhHHHhhhhhhhh
Q 025508 154 QTLAKKLDQVKFDVEMKYNL 173 (251)
Q Consensus 154 d~L~~~LeqV~~eve~kY~~ 173 (251)
+.-...|+++..+-+.-|..
T Consensus 414 ~~~~~~Ld~Ie~~Y~~fh~~ 433 (473)
T PF14643_consen 414 EKALDLLDQIEEEYEDFHKK 433 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555566655555544433
No 241
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=30.59 E-value=2.6e+02 Score=22.78 Aligned_cols=52 Identities=23% Similarity=0.311 Sum_probs=41.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHH
Q 025508 11 SLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESL 69 (251)
Q Consensus 11 sLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL 69 (251)
.|...|+++.+....-..+|..|+.... .|.--++.|+-+|+.||..-.+.-
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~-------~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQ-------ELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888888899999999999987764 455678889999999998766543
No 242
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=30.12 E-value=2.8e+02 Score=23.10 Aligned_cols=58 Identities=33% Similarity=0.332 Sum_probs=42.6
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHH
Q 025508 8 GMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLE 70 (251)
Q Consensus 8 emesLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~ 70 (251)
|++|=|+----.++||. -.|.+.++-.|..|.+-|.+|. +.|.+-|+||...-|.-|.
T Consensus 11 dLeselsk~Ktsq~d~~--~~eLEkYkqly~eElk~r~SLs---~kL~ktnerLaevstkLl~ 68 (111)
T PF12001_consen 11 DLESELSKMKTSQEDSN--KTELEKYKQLYLEELKLRKSLS---NKLNKTNERLAEVSTKLLV 68 (111)
T ss_pred HHHHHHHHhHhHhhhhh--HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhHHHH
Confidence 34444444444555652 6789999999999999999994 5677899999887776653
No 243
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=29.88 E-value=84 Score=23.07 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=19.1
Q ss_pred HHHHHHHhhhhhhHHHHhhhhh
Q 025508 225 TLKLKIMKLRKENEILKRKLNS 246 (251)
Q Consensus 225 tLKqKiMKLRKENE~LKR~l~~ 246 (251)
.....|-+|+.||..||..|.-
T Consensus 26 ~a~~rl~~l~~EN~~Lr~eL~~ 47 (52)
T PF12808_consen 26 AARKRLSKLEGENRLLRAELER 47 (52)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999998864
No 244
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=29.59 E-value=3.9e+02 Score=23.47 Aligned_cols=148 Identities=21% Similarity=0.219 Sum_probs=77.4
Q ss_pred HhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHh----HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHH
Q 025508 80 AKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAK----ARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQT 155 (251)
Q Consensus 80 tk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~----i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~ 155 (251)
+..-+|-.+-..++.++.+|- .+...|..|+.-.... +..=+.+|+.++.+-. +|+.=|..|.+=++.
T Consensus 24 ~~ad~Ll~qa~~l~~~i~sm~-~y~eei~~l~~~~~~~~~~~l~~En~qi~~Lq~EN~-------eL~~~leEhq~alel 95 (181)
T PF05769_consen 24 NAADSLLSQAEALNKQIESMR-QYQEEIQELNELSKNRPRAGLQQENRQIRQLQQENR-------ELRQSLEEHQSALEL 95 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcccchhHHHhhHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 344555555556666665554 4444554444322211 1111344555544432 677778888888887
Q ss_pred HHhhhhhHHHhhhhhhhhhhhhhHHHHHH-HHHHhHHHHHHHHHHHHHHHHhh----hhHHHhhhhhhhhhhHHHHHHHH
Q 025508 156 LAKKLDQVKFDVEMKYNLEIQDLKDCLLL-EQEEKNELNKRVQDLEKELLMNR----TKMAEHNRDLTSVRSVETLKLKI 230 (251)
Q Consensus 156 L~~~LeqV~~eve~kY~~EIqdLkD~L~~-EqEeKn~l~~kLq~~ekElli~k----tK~~eqqrD~tS~~hVetLKqKi 230 (251)
..++.-......-..++. +..+..+- .+. +++.++..- -.|+. |+-+...-|-.| -....+|
T Consensus 96 IM~KyReq~~~l~~~~k~---~~~~~~~~~~~~----~~~~~~~~~--~kI~EM~~vM~~ai~~de~~~----~~~qe~i 162 (181)
T PF05769_consen 96 IMSKYREQMSQLMMASKF---DDTEPYLEANEQ----LSKEVQSQA--EKICEMAAVMRKAIELDEENS----QEEQEII 162 (181)
T ss_pred HHHHHHHHHHHHHHHhhh---hhhhHHHHHHHH----HHHHHhhHH--HHHHHHHHHHHHHHhcchhhh----HhHHHHH
Confidence 777665444433222222 22333222 222 222222221 13333 334444444444 3567888
Q ss_pred HhhhhhhHHHHhhhhhcc
Q 025508 231 MKLRKENEILKRKLNSSS 248 (251)
Q Consensus 231 MKLRKENE~LKR~l~~s~ 248 (251)
-.|..||+.|++-|..|.
T Consensus 163 ~qL~~EN~~LRelL~Is~ 180 (181)
T PF05769_consen 163 AQLETENKGLRELLQISK 180 (181)
T ss_pred HHHHHHHHHHHHHHhhhc
Confidence 999999999999988775
No 245
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=29.47 E-value=4e+02 Score=23.57 Aligned_cols=105 Identities=21% Similarity=0.276 Sum_probs=60.8
Q ss_pred hHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhh--------------HhhhHHHHHHHhhhhhhhhhHHHHHHHHH
Q 025508 43 RREALEITCNTLKKENERARNSYTESLENLADQLERK--------------AKCQSLKEELKRVNDEHLSKEYELRKVID 108 (251)
Q Consensus 43 ~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~r--------------tk~qsLkEEL~r~n~e~lskE~Eh~raie 108 (251)
-++|+.+..+.|.=-.-|+..| |-|.++.... ++ .....++.++..+|-.-.
T Consensus 102 w~~al~na~a~lehq~~R~~NL--eLl~~~g~na-W~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK----------- 167 (221)
T PF05700_consen 102 WKEALDNAYAQLEHQRLRLENL--ELLSKYGENA-WLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERK----------- 167 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 4567777777776655555554 4555544321 11 112223333333332222
Q ss_pred HHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhh
Q 025508 109 SIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLD 161 (251)
Q Consensus 109 ~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~Le 161 (251)
..+.....++..||.+-..++..-.--|..+.+|+.++...+.-...+..+.+
T Consensus 168 ~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~~~~ 220 (221)
T PF05700_consen 168 RRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKENQQ 220 (221)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 22344555666777777777777777788888888888887777666655544
No 246
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=29.39 E-value=7.1e+02 Score=26.40 Aligned_cols=97 Identities=20% Similarity=0.285 Sum_probs=63.7
Q ss_pred HHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHH
Q 025508 44 REALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFED 123 (251)
Q Consensus 44 ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~ 123 (251)
+++|...-.=|+++-+.|--.-+.++..+..++-|- ..-.+.--+.-..+. + |.+ ++++ ..-+.+++.||+
T Consensus 483 ~eel~~a~~llk~e~~~l~~dd~q~~~ec~s~~~~l-~~~~~~~~~~~~~d~--a-e~~----le~m-~~~ak~~~klek 553 (617)
T KOG0050|consen 483 QEELDNAYDLLKQEAEELVSDDYQFLKECLSRMQYL-GSTYTRIQVATAEDP--A-EKE----LENM-AKKAKRAEKLEK 553 (617)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH-HhhhhhhhhhccCCc--H-HHH----HHHH-HHHHHHHHHHHH
Confidence 456666666677777766555447888888887765 333444444443343 2 333 3332 344678999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHh
Q 025508 124 QIRSLMLEKATNEATISNLHQDLAAH 149 (251)
Q Consensus 124 qi~~~~~q~at~Ea~I~qL~~dLaah 149 (251)
++..++-.--..+.+|.|++.-+.|.
T Consensus 554 Klk~~~~gyq~r~~l~kq~~~~~~~l 579 (617)
T KOG0050|consen 554 KLKHLLGGYQQREMLIKQIHHTLKAL 579 (617)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 99999876555599999998777653
No 247
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=29.36 E-value=4.2e+02 Score=23.74 Aligned_cols=48 Identities=23% Similarity=0.319 Sum_probs=22.7
Q ss_pred HHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHHhh
Q 025508 45 EALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRV 92 (251)
Q Consensus 45 eALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~r~ 92 (251)
.+++......+.+-+|.+.||..-+---.+--+.++.+.+++.++..+
T Consensus 107 ~~~~~~l~~a~~~~~R~~~L~~~g~iS~~~~d~~~~~~~~a~~~l~~~ 154 (327)
T TIGR02971 107 NRLEAELETAQREVDRYRSLFRDGAVSASDLDSKALKLRTAEEELEEA 154 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566666666666543333223233334444444444333
No 248
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=29.19 E-value=2.5e+02 Score=21.03 Aligned_cols=51 Identities=12% Similarity=0.142 Sum_probs=38.1
Q ss_pred hhhhHHhHHHHHHhHH-HHHHHHHHHhhhhHhhhHHHHHHHhhhhhhhhhHH
Q 025508 51 CNTLKKENERARNSYT-ESLENLADQLERKAKCQSLKEELKRVNDEHLSKEY 101 (251)
Q Consensus 51 c~~Lk~dneRLrklyt-EsL~~~a~qle~rtk~qsLkEEL~r~n~e~lskE~ 101 (251)
...+.+.+..|..+-. +..+...+...|..|..+++.++..+++.....+.
T Consensus 34 ~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~ 85 (92)
T PF14712_consen 34 LQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKK 85 (92)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666766655 66675666667999999999999999988877654
No 249
>PF10154 DUF2362: Uncharacterized conserved protein (DUF2362); InterPro: IPR019311 This is a family of proteins conserved from nematodes to humans. The function is not known.
Probab=28.94 E-value=2.2e+02 Score=29.18 Aligned_cols=82 Identities=17% Similarity=0.250 Sum_probs=54.4
Q ss_pred hhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhh
Q 025508 92 VNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKY 171 (251)
Q Consensus 92 ~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY 171 (251)
+-+.++.+|+.+..++..+-+.=+..+..|+.+= ...-+.+|.+|-..++.-.. ..++.++=.=...++.+|
T Consensus 105 aletLL~LE~~Ya~~vseli~~Rd~el~kl~~rq------~~Eme~a~q~Lg~~ltd~dI--N~laaqH~Ee~q~ie~kw 176 (510)
T PF10154_consen 105 ALETLLQLEHNYAKAVSELIQARDQELKKLQERQ------TEEMEKAMQKLGISLTDRDI--NHLAAQHFEEQQRIESKW 176 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhcCCCCCchhH--HHHHHHHHHHHHHHHHHH
Confidence 4456888999999999888887777777766443 22234445555444443332 345555555555689999
Q ss_pred hhhhhhhHHH
Q 025508 172 NLEIQDLKDC 181 (251)
Q Consensus 172 ~~EIqdLkD~ 181 (251)
..+|.+|++.
T Consensus 177 ~seL~~L~~~ 186 (510)
T PF10154_consen 177 SSELKALKET 186 (510)
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 250
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=28.84 E-value=57 Score=25.20 Aligned_cols=34 Identities=35% Similarity=0.312 Sum_probs=28.4
Q ss_pred hhhhhhhHHHHHHHHHhhhhhhHHHHhhhhhccc
Q 025508 216 DLTSVRSVETLKLKIMKLRKENEILKRKLNSSSQ 249 (251)
Q Consensus 216 D~tS~~hVetLKqKiMKLRKENE~LKR~l~~s~~ 249 (251)
...+..+++.++..+-+||++|+.|.+.+.+...
T Consensus 7 ~~~~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~G 40 (100)
T PF01486_consen 7 TDLWDSQHEELQQEIAKLRKENESLQKELRHLMG 40 (100)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3466788999999999999999999988776543
No 251
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=28.65 E-value=8e+02 Score=26.76 Aligned_cols=48 Identities=15% Similarity=0.281 Sum_probs=34.8
Q ss_pred HHHhhhhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHH
Q 025508 73 ADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARD 120 (251)
Q Consensus 73 a~qle~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~ 120 (251)
++-+-..-|...|++|+-++|..+-.|--.+.-.++.||++|..++.+
T Consensus 479 ~~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~e 526 (762)
T PLN03229 479 VIAMGLQERLENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSR 526 (762)
T ss_pred hhhhhHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhc
Confidence 334444567888888999998766555445555599999999888775
No 252
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=28.43 E-value=2.4e+02 Score=29.52 Aligned_cols=57 Identities=28% Similarity=0.486 Sum_probs=42.4
Q ss_pred hhhHHHHHhhHHHHHH----------HHHHHHHHHHHHHhh-----------hhhHHHhHHHHHHHhhhhHHhHHHHH
Q 025508 6 DDGMESLLSDFDQIYE----------DFKRAISEVQLLRSS-----------CNAETKRREALEITCNTLKKENERAR 62 (251)
Q Consensus 6 DEemesLL~~Fd~i~e----------~fk~g~~Eiq~Lrs~-----------~~aE~k~ReALE~tc~~Lk~dneRLr 62 (251)
.+|..-|+.+|.++++ .|++++.-+.+=|+. ..+|+++|.++|--|.-++...--++
T Consensus 27 e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~ 104 (604)
T KOG3564|consen 27 EDEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLIK 104 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 6889999999999988 566777666655543 45788999999888887766544333
No 253
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=28.13 E-value=3.1e+02 Score=24.89 Aligned_cols=54 Identities=33% Similarity=0.470 Sum_probs=37.4
Q ss_pred HHHHHHHhhhhhHHHh---H--HHHHHHhhhhHHhHH-HHHHhHHHHHHHH--HHHhhhhHh
Q 025508 28 SEVQLLRSSCNAETKR---R--EALEITCNTLKKENE-RARNSYTESLENL--ADQLERKAK 81 (251)
Q Consensus 28 ~Eiq~Lrs~~~aE~k~---R--eALE~tc~~Lk~dne-RLrklytEsL~~~--a~qle~rtk 81 (251)
.+|..|++.++...++ + +.|++-.++++++.+ |=+.||.|...++ |..++.+++
T Consensus 119 ~kI~~L~~~in~~~k~~~n~~i~slk~EL~d~iKe~e~~emeLyyecMkkL~~a~~~esk~~ 180 (181)
T PF04645_consen 119 LKISSLQKEINKNKKKDLNEEIESLKSELNDLIKEREIREMELYYECMKKLAKAHEVESKSK 180 (181)
T ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccC
Confidence 3556666777776654 2 577888888888776 4578999999988 445555444
No 254
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=28.05 E-value=4.5e+02 Score=23.72 Aligned_cols=40 Identities=20% Similarity=0.327 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhh
Q 025508 134 TNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNL 173 (251)
Q Consensus 134 t~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~ 173 (251)
.....+.++..++++.++-++.+...+++....+.+.+..
T Consensus 132 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g 171 (301)
T PF14362_consen 132 SFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFG 171 (301)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3444555555555555666666665555555555444444
No 255
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=27.94 E-value=4.9e+02 Score=24.06 Aligned_cols=41 Identities=17% Similarity=0.111 Sum_probs=17.5
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q 025508 89 LKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLML 130 (251)
Q Consensus 89 L~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~ 130 (251)
|+.+...+..-|.+--++-..+ +.-.......|..+..+..
T Consensus 123 Ln~A~~kVneAE~ek~~ae~eH-~~~~~~~~~ae~~v~~Lek 163 (239)
T PF05276_consen 123 LNHATQKVNEAEQEKTRAEREH-QRRARIYNEAEQRVQQLEK 163 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4555555554444433322222 1222334455555555443
No 256
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=27.61 E-value=2.3e+02 Score=26.34 Aligned_cols=40 Identities=25% Similarity=0.274 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhH
Q 025508 22 DFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSY 65 (251)
Q Consensus 22 ~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrkly 65 (251)
+|++=..|.|.||. +...=+.+......|+.||.||+++.
T Consensus 67 ~~~~~~~en~~Lk~----~l~~~~~~~~~~~~l~~EN~~Lr~lL 106 (284)
T COG1792 67 SLKDLALENEELKK----ELAELEQLLEEVESLEEENKRLKELL 106 (284)
T ss_pred HhHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444555555554 33344455666778888888888764
No 257
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=27.38 E-value=2e+02 Score=20.97 Aligned_cols=61 Identities=25% Similarity=0.299 Sum_probs=40.2
Q ss_pred HHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHh-hhhHhhhHHHHHHHhhhh
Q 025508 28 SEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQL-ERKAKCQSLKEELKRVND 94 (251)
Q Consensus 28 ~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~ql-e~rtk~qsLkEEL~r~n~ 94 (251)
.-|..|+-.+..|.+-|+++|+...-+...... +. +.....+| +...|..-|+.+|.+.+.
T Consensus 9 ~~l~~L~~~l~~E~~~r~Gaenm~~~~~~~~~~--~~----~~~~~~~l~es~~ki~~Lr~~L~k~~~ 70 (72)
T cd00089 9 SRLERLEKELSIELKVKEGAENLLRLYSDEKKK--KL----LAEAEQMLRESKQKLELLKMQLEKLKQ 70 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--cC----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346788889999999999999988766655432 22 22222222 455677778887777653
No 258
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=27.27 E-value=7.3e+02 Score=25.89 Aligned_cols=200 Identities=19% Similarity=0.313 Sum_probs=114.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHh------HHHHHHh-----HHHHHHHHHHHhhhhHhh
Q 025508 14 SDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKE------NERARNS-----YTESLENLADQLERKAKC 82 (251)
Q Consensus 14 ~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~d------neRLrkl-----ytEsL~~~a~qle~rtk~ 82 (251)
.+|...|+-|+.+-.+++.++.+-..=..+-+-|++.+.-|..- -++|--. ..|.|...+
T Consensus 157 ~~~~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~gE~e~L~~e~~rLsn~ekl~~~~--------- 227 (557)
T COG0497 157 EAYQEAYQAWKQARRELEDLQEKERERAQRADLLQFQLEELEELNLQPGEDEELEEERKRLSNSEKLAEAI--------- 227 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhhHHHHHHHH---------
Confidence 34777888888888888888877655555666666666555431 1222111 112222111
Q ss_pred hHHHHHHHhhhhhhhhhHHHHHHHHHHH--hHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhh
Q 025508 83 QSLKEELKRVNDEHLSKEYELRKVIDSI--KQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKL 160 (251)
Q Consensus 83 qsLkEEL~r~n~e~lskE~Eh~raie~L--k~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~L 160 (251)
++--+=|.. .+...+--.-..+++..| -.+|..+..++.+.|+.++.+...-=.-|.+.-.++..--...+....||
T Consensus 228 ~~a~~~L~g-e~~~~~~~~~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl 306 (557)
T COG0497 228 QNALELLSG-EDDTVSALSLLGRALEALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERL 306 (557)
T ss_pred HHHHHHHhC-CCCchhHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 111111111 011112233344555555 35566677777777777766653322223333333333333444455555
Q ss_pred hhHHHhhhhhhhhhhhhhH---HHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhhhhHH
Q 025508 161 DQVKFDVEMKYNLEIQDLK---DCLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSVE 224 (251)
Q Consensus 161 eqV~~eve~kY~~EIqdLk---D~L~~EqEeKn~l~~kLq~~ekElli~ktK~~eqqrD~tS~~hVe 224 (251)
..... .-=||...|.||- +.+.-|.+.=+.....+..++++.-..+.++.+.-+.++..||--
T Consensus 307 ~~L~~-l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~ 372 (557)
T COG0497 307 FALKS-LARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKA 372 (557)
T ss_pred HHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44432 3458999888775 455566666666677899999999999999999999999888754
No 259
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.12 E-value=9.3e+02 Score=27.04 Aligned_cols=143 Identities=22% Similarity=0.273 Sum_probs=83.9
Q ss_pred HHHHHHHHHhh-----hhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHH------hHHHHHHHHHHHHHHhhhh
Q 025508 67 ESLENLADQLE-----RKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAA------KARDFEDQIRSLMLEKATN 135 (251)
Q Consensus 67 EsL~~~a~qle-----~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~------~i~~LE~qi~~~~~q~at~ 135 (251)
|+||-=-.||+ -|.....-|+|+..++.+.--|=.|..--.-.||+-.++ .-..|+.|+.. +|.|..
T Consensus 447 etLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq--~q~a~~ 524 (1118)
T KOG1029|consen 447 ETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQ--KQSAHK 524 (1118)
T ss_pred HHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH--hhhhcc
Confidence 45555555553 345666677777776655444333322222222222222 22345555443 334433
Q ss_pred H--HHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHh
Q 025508 136 E--ATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMAEH 213 (251)
Q Consensus 136 E--a~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekElli~ktK~~eq 213 (251)
+ +-..+|+--...-..-++.+...||.+..+.++||+ ||.-++.-+ .|=|.+.+.++=..++...+.|-++.++
T Consensus 525 ~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~-eidi~n~ql---kelk~~~~~q~lake~~yk~e~d~~ke~ 600 (1118)
T KOG1029|consen 525 ETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLN-EIDIFNNQL---KELKEDVNSQQLAKEELYKNERDKLKEA 600 (1118)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 334566666666666678889999999999999995 554444333 2345667777777777777888888877
Q ss_pred hh
Q 025508 214 NR 215 (251)
Q Consensus 214 qr 215 (251)
++
T Consensus 601 et 602 (1118)
T KOG1029|consen 601 ET 602 (1118)
T ss_pred HH
Confidence 65
No 260
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.05 E-value=3.1e+02 Score=21.54 Aligned_cols=54 Identities=9% Similarity=0.127 Sum_probs=41.1
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHh
Q 025508 113 DYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFD 166 (251)
Q Consensus 113 ~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~e 166 (251)
..+..|.+||-++.--..-...=-.++...+..++....+++.|-+|+.-+.-.
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~~ 58 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQPS 58 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 456678888887765555455555677888999999999999999999876543
No 261
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=26.83 E-value=3.6e+02 Score=27.05 Aligned_cols=64 Identities=25% Similarity=0.273 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHH
Q 025508 138 TISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKE 202 (251)
Q Consensus 138 ~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekE 202 (251)
+|..-..|-...+.|-|-|-+-|-+++. |-++-+.++|-|--++.--.||+--+.-+|+.+..|
T Consensus 93 s~~e~q~e~~qL~~qnqkL~nqL~~~~~-vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e 156 (401)
T PF06785_consen 93 SVEERQQESEQLQSQNQKLKNQLFHVRE-VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQE 156 (401)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444456667777777777777777766 778888888888777777777777777777766655
No 262
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=26.83 E-value=4.5e+02 Score=23.27 Aligned_cols=12 Identities=33% Similarity=0.410 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 025508 137 ATISNLHQDLAA 148 (251)
Q Consensus 137 a~I~qL~~dLaa 148 (251)
+-|.+|..+..+
T Consensus 159 ~ei~~lks~~~~ 170 (190)
T PF05266_consen 159 KEISRLKSEAEA 170 (190)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 263
>COG3824 Predicted Zn-dependent protease [General function prediction only]
Probab=26.62 E-value=42 Score=29.02 Aligned_cols=40 Identities=25% Similarity=0.400 Sum_probs=32.7
Q ss_pred CCCCChhhHHHHHhh-HHHHHHHHHHHHHHHHHHHhhhhhH
Q 025508 1 MAATSDDGMESLLSD-FDQIYEDFKRAISEVQLLRSSCNAE 40 (251)
Q Consensus 1 MaatsDEemesLL~~-Fd~i~e~fk~g~~Eiq~Lrs~~~aE 40 (251)
|.|+|+++++.|.++ ||++=++|++...+|=.+=++.+..
T Consensus 9 ~~aps~~~fe~La~~A~d~lP~efr~l~~~vvi~i~dfp~d 49 (136)
T COG3824 9 RLAPSLERFEELASDALDHLPQEFRDLMGNVVILIADFPPD 49 (136)
T ss_pred ccCCCHHHHHHHHHHHHHhCcHHHHHHhcCeEEEeccCChH
Confidence 578999999999875 9999999999988876665655554
No 264
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=26.26 E-value=22 Score=36.27 Aligned_cols=46 Identities=28% Similarity=0.312 Sum_probs=0.0
Q ss_pred hhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhhhhH
Q 025508 171 YNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSV 223 (251)
Q Consensus 171 Y~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekElli~ktK~~eqqrD~tS~~hV 223 (251)
.-.||+.|+-- -.+..+++..+|++.--+|.-.+-..+=++|.|+-
T Consensus 620 ~~~e~~~L~~q-------l~e~~~~i~~lE~~~e~~k~~~~~EekLi~sa~y~ 665 (713)
T PF05622_consen 620 SSPEIQALKKQ-------LQEKDRRIESLEKELEKSKQMREQEEKLIVSAWYN 665 (713)
T ss_dssp -----------------------------------------------------
T ss_pred ChHHHHHHHHH-------HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 34556655551 12233566777777766665555566667888874
No 265
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=26.24 E-value=5e+02 Score=23.67 Aligned_cols=80 Identities=23% Similarity=0.278 Sum_probs=61.5
Q ss_pred HHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHH
Q 025508 115 AAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNK 194 (251)
Q Consensus 115 ~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~ 194 (251)
++.-..||++...+--..|..++-..+|+.||..-..+.+..+.+-.+++.+ ++.|...-.--|..-+.|++
T Consensus 104 eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~e--------a~aL~~e~~aaqaQL~~lQ~ 175 (192)
T PF11180_consen 104 EIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQE--------AQALEAERRAAQAQLRQLQR 175 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Confidence 4455679999999999999999999999999999999999998887777654 45555544555555666777
Q ss_pred HHHHHHHH
Q 025508 195 RVQDLEKE 202 (251)
Q Consensus 195 kLq~~ekE 202 (251)
.+..||..
T Consensus 176 qv~~Lq~q 183 (192)
T PF11180_consen 176 QVRQLQRQ 183 (192)
T ss_pred HHHHHHHH
Confidence 77666654
No 266
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=26.22 E-value=7.7e+02 Score=25.78 Aligned_cols=159 Identities=19% Similarity=0.240 Sum_probs=97.4
Q ss_pred HhhhhHhhh---------HHHHHHHhh--------hhhhhhhHHHHH---HHHHHHhHHHHHhHHHHHHHHHHHHHHhhh
Q 025508 75 QLERKAKCQ---------SLKEELKRV--------NDEHLSKEYELR---KVIDSIKQDYAAKARDFEDQIRSLMLEKAT 134 (251)
Q Consensus 75 qle~rtk~q---------sLkEEL~r~--------n~e~lskE~Eh~---raie~Lk~~~~~~i~~LE~qi~~~~~q~at 134 (251)
.|+.+-|.+ +|++|+... -+++.+.-..++ +.+.+-+.++...|..|..-|-.+-....-
T Consensus 204 alEk~mka~e~~rl~~E~~lreElE~rW~~lq~l~Ee~l~al~gq~ev~~~~~~~E~~~l~eq~~~ld~AV~~Ltk~v~~ 283 (531)
T PF15450_consen 204 ALEKRMKAQESSRLRTERSLREELESRWQKLQELTEERLRALQGQQEVGLGGIQSEESKLLEQCRKLDEAVAQLTKFVQQ 283 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 566666665 677777622 233333333333 223333455556666666666666555555
Q ss_pred hHHHHHH-HHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHh
Q 025508 135 NEATISN-LHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMAEH 213 (251)
Q Consensus 135 ~Ea~I~q-L~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekElli~ktK~~eq 213 (251)
+-.-|++ |..++.|-.+|-+.+-++.+. +.++.++-|..+.-.-.+-+++.+.--..||...+=+--+...++.+
T Consensus 284 ~q~sL~kvl~aE~kaR~~k~~~e~sk~ee----L~~~L~~~lea~q~agkla~Qe~~~~ld~LqEksqile~sv~~l~~~ 359 (531)
T PF15450_consen 284 NQKSLNKVLNAEQKARDAKEKLEESKAEE----LATKLQENLEAMQLAGKLAQQETQSELDLLQEKSQILEDSVAELMRQ 359 (531)
T ss_pred HHHHHHHHHhhHHHHHHHHhHHHHhhHHH----HHHHHHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555 456777777777777666654 45566677777777777777777777777777777666677788888
Q ss_pred hhhhhhhhhHH-----------HHHHHHHhhhhhhHH
Q 025508 214 NRDLTSVRSVE-----------TLKLKIMKLRKENEI 239 (251)
Q Consensus 214 qrD~tS~~hVe-----------tLKqKiMKLRKENE~ 239 (251)
..|+.- |+. ||=.||-.++.|.+.
T Consensus 360 lkDLd~--~~~aLs~rld~qEqtL~~rL~e~~~e~~~ 394 (531)
T PF15450_consen 360 LKDLDD--HILALSWRLDLQEQTLNLRLSEAKNEWES 394 (531)
T ss_pred HHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 888764 433 455555555555443
No 267
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=25.72 E-value=5.2e+02 Score=23.61 Aligned_cols=154 Identities=23% Similarity=0.234 Sum_probs=87.7
Q ss_pred HHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHH
Q 025508 44 REALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFED 123 (251)
Q Consensus 44 ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~ 123 (251)
=++++-+.+.|..+++-|++-|. |+.+..+ ++-.+++||+.++.-..+.|++.+.-..+.++
T Consensus 31 ve~~ee~na~L~~e~~~L~~q~~-s~Qqal~------~aK~l~eEledLk~~~~~lEE~~~~L~aq~rq----------- 92 (193)
T PF14662_consen 31 VETAEEGNAQLAEEITDLRKQLK-SLQQALQ------KAKALEEELEDLKTLAKSLEEENRSLLAQARQ----------- 92 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 36788889999999999999988 5654443 45578999999998888888887765554432
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 025508 124 QIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKEL 203 (251)
Q Consensus 124 qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekEl 203 (251)
+-.++-+=.+-|.-|..+-.-..++++-+.++-.+... ++-.|.+++=- =+.
T Consensus 93 ----lEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~----------------------~~~~Lq~Ql~~--~e~ 144 (193)
T PF14662_consen 93 ----LEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELAT----------------------EKATLQRQLCE--FES 144 (193)
T ss_pred ----HHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHH----------------------hhHHHHHHHHH--HHH
Confidence 22222222233344444455555555555444333211 23333333311 122
Q ss_pred HHhhhhHHHhhhhhhhhhhHHHHHHHHHhhhhhhHHHHhhhhhc
Q 025508 204 LMNRTKMAEHNRDLTSVRSVETLKLKIMKLRKENEILKRKLNSS 247 (251)
Q Consensus 204 li~ktK~~eqqrD~tS~~hVetLKqKiMKLRKENE~LKR~l~~s 247 (251)
+|+...-.- +..++|++.|+.=|--.|.-++.|+-.+++-
T Consensus 145 l~~~~da~l----~e~t~~i~eL~~~ieEy~~~teeLR~e~s~L 184 (193)
T PF14662_consen 145 LICQRDAIL----SERTQQIEELKKTIEEYRSITEELRLEKSRL 184 (193)
T ss_pred HHHHHHHHH----HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 232211111 1345677777777777777777776665543
No 268
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=25.63 E-value=2.9e+02 Score=23.50 Aligned_cols=124 Identities=18% Similarity=0.301 Sum_probs=74.7
Q ss_pred hhhHHHHHhh-HHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhH
Q 025508 6 DDGMESLLSD-FDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAKCQS 84 (251)
Q Consensus 6 DEemesLL~~-Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qs 84 (251)
...|+.|+.. |+.++ .+|-|-.+.|.-.+-|+.|. -+.|=+.-+..|+. .-.|+..|...=..-.
T Consensus 7 ~~~~eali~~lFa~VS-alKaAY~qLQ~Ah~PyDpd~-I~aAD~~vVsEL~~-Ls~LK~~y~~~~~~~~----------- 72 (131)
T PF04859_consen 7 AAAMEALIAKLFATVS-ALKAAYAQLQQAHSPYDPDK-IQAADEAVVSELRR-LSELKRRYRKKQSDPS----------- 72 (131)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHHHH-HHHHHHHHHcCCCCCC-----------
Confidence 3467777654 66655 79999999999999998873 34444444444432 3445666654322211
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhh
Q 025508 85 LKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKL 160 (251)
Q Consensus 85 LkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~L 160 (251)
.....+.+-= .+.-.+=..|+..+++|+.+++ .+++-|..|+..|....+.--.|..||
T Consensus 73 ------~~~~~l~a~~----~e~qsli~~yE~~~~kLe~e~~-------~Kdsei~~Lr~~L~~~~~~n~~Lekrl 131 (131)
T PF04859_consen 73 ------PQVARLAAEI----QEQQSLIKTYEIVVKKLEAELR-------AKDSEIDRLREKLDELNRANKSLEKRL 131 (131)
T ss_pred ------ccccccccch----HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 0001111111 2222344557777777776654 689999999999998877766665554
No 269
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=25.60 E-value=3.5e+02 Score=21.56 Aligned_cols=49 Identities=16% Similarity=0.341 Sum_probs=29.5
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHh
Q 025508 113 DYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFD 166 (251)
Q Consensus 113 ~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~e 166 (251)
.++..+..+|.++.++= +-..+..|+.+++..+--|+.|+.+++.|..-
T Consensus 46 ~~~~Rl~~lE~~l~~LP-----t~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~ 94 (106)
T PF10805_consen 46 EHDRRLQALETKLEHLP-----TRDDVHDLQLELAELRGELKELSARLQGVSHQ 94 (106)
T ss_pred HHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 35677778888887762 22345555556666665666666666555443
No 270
>PRK11032 hypothetical protein; Provisional
Probab=25.41 E-value=4.1e+02 Score=23.30 Aligned_cols=52 Identities=25% Similarity=0.421 Sum_probs=44.3
Q ss_pred HHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHHhhhhh
Q 025508 44 REALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVNDE 95 (251)
Q Consensus 44 ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~r~n~e 95 (251)
|+=++..-+-|++|.+.+-+.|.++=+.|.+.+-++.--.|||..|.-+-|+
T Consensus 45 ~dEl~lv~~ylkRDL~ef~~~~~~~~~~~~~s~~~~~i~~slw~~L~~ItDr 96 (160)
T PRK11032 45 RDEVDLITRAVRRDLEEFARSYEESKEEFSDSVFMRVIKESLWQELADITDK 96 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 3445566678999999999999999998888888999999999999877665
No 271
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.37 E-value=8.8e+02 Score=26.16 Aligned_cols=146 Identities=20% Similarity=0.319 Sum_probs=0.0
Q ss_pred CCCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhH
Q 025508 1 MAATSDDGMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKA 80 (251)
Q Consensus 1 MaatsDEemesLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rt 80 (251)
|+|+.|-+|+.|.-..-.+--=.-----+|-+||.-+-+ -.++.|...++||..-|-=++.-||+..++-+.|+-=
T Consensus 592 ~~~~~dk~~e~l~~~ilklksllstkreqi~tlrtvlka---nkqtaevaltnlksKYEnEK~mvtetm~KlRnELk~L- 667 (772)
T KOG0999|consen 592 LGPAADKDKEALMEQILKLKSLLSTKREQITTLRTVLKA---NKQTAEVALTNLKSKYENEKAMVTETMDKLRNELKAL- 667 (772)
T ss_pred cCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHH-
Q ss_pred hhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhh
Q 025508 81 KCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKL 160 (251)
Q Consensus 81 k~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~L 160 (251)
.|---+..+|.--|.+.|.++=.|+-.+.-|.+.+|.--+-|.+=|-----+-=+|-+||
T Consensus 668 --------------------kedaatfsslramf~~R~ee~~tq~de~~~ql~aaedekKtln~llrmaiqqklaltqrl 727 (772)
T KOG0999|consen 668 --------------------KEDAATFSSLRAMFAARCEEYVTQLDELQRQLAAAEDEKKTLNQLLRMAIQQKLALTQRL 727 (772)
T ss_pred --------------------HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHhhhhh
Q 025508 161 DQVKFDVEMK 170 (251)
Q Consensus 161 eqV~~eve~k 170 (251)
+.+..+-+..
T Consensus 728 e~~e~d~~~~ 737 (772)
T KOG0999|consen 728 EELELDHEQQ 737 (772)
T ss_pred HHHhccHHHH
No 272
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=25.35 E-value=7.8e+02 Score=25.53 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=18.7
Q ss_pred HHhHHHHHhHHHHHHHHHHHHHHhhh
Q 025508 109 SIKQDYAAKARDFEDQIRSLMLEKAT 134 (251)
Q Consensus 109 ~Lk~~~~~~i~~LE~qi~~~~~q~at 134 (251)
.....++.+|.+|+.||+-++...-+
T Consensus 428 ~~~~s~d~~I~dLqEQlrDlmf~le~ 453 (493)
T KOG0804|consen 428 EALGSKDEKITDLQEQLRDLMFFLEA 453 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhHheehhh
Confidence 34456778888888888888765543
No 273
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=25.19 E-value=4.9e+02 Score=23.20 Aligned_cols=39 Identities=10% Similarity=0.223 Sum_probs=21.9
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHH
Q 025508 87 EELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQI 125 (251)
Q Consensus 87 EEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi 125 (251)
.|+..+..++..++.+|.-.+-.++..|-..=..||.++
T Consensus 85 ~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~ 123 (206)
T PF14988_consen 85 REIQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEA 123 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555
No 274
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=25.19 E-value=4.6e+02 Score=22.89 Aligned_cols=145 Identities=19% Similarity=0.222 Sum_probs=72.3
Q ss_pred HHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhh--hhHhhhHHHHHHHhhhhhhhhhH---HHHHHHHHHHhHHHHHhHHH
Q 025508 46 ALEITCNTLKKENERARNSYTESLENLADQLE--RKAKCQSLKEELKRVNDEHLSKE---YELRKVIDSIKQDYAAKARD 120 (251)
Q Consensus 46 ALE~tc~~Lk~dneRLrklytEsL~~~a~qle--~rtk~qsLkEEL~r~n~e~lskE---~Eh~raie~Lk~~~~~~i~~ 120 (251)
.+......+..+.+++...+..+-.++..++. ...=...++...+...+...... .....+++-.|.+|...|.+
T Consensus 57 sl~~a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~ 136 (236)
T cd07651 57 GLKNSLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADCSK 136 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566777888888888877766666555442 11112223333333322222222 22345677788999999988
Q ss_pred HHHHHHHHH----HHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHH
Q 025508 121 FEDQIRSLM----LEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRV 196 (251)
Q Consensus 121 LE~qi~~~~----~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kL 196 (251)
++.--...- .+..-.++-+.+..+++...++......+.+..++. +|..+. -..-..+
T Consensus 137 ~e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~----~~~~~~--------------~~~~~~~ 198 (236)
T cd07651 137 INSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNE----IWNREW--------------KAALDDF 198 (236)
T ss_pred HHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH--------------HHHHHHH
Confidence 874221100 111222333334444444444444444443333322 233222 3445667
Q ss_pred HHHHHHHHHhhhh
Q 025508 197 QDLEKELLMNRTK 209 (251)
Q Consensus 197 q~~ekElli~ktK 209 (251)
|.+|-+ +|..||
T Consensus 199 Q~lEe~-Ri~~lk 210 (236)
T cd07651 199 QDLEEE-RIQFLK 210 (236)
T ss_pred HHHHHH-HHHHHH
Confidence 777766 666666
No 275
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=24.85 E-value=2.8e+02 Score=20.21 Aligned_cols=63 Identities=17% Similarity=0.177 Sum_probs=44.4
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhhhhHHHHHHHHHhhhh
Q 025508 172 NLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIMKLRK 235 (251)
Q Consensus 172 ~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekElli~ktK~~eqqrD~tS~~hVetLKqKiMKLRK 235 (251)
..-|.+|..-|.+|..-+...-+=++-....--. +..-..+++=..|++.++.|+..|-++..
T Consensus 8 ~~~l~~L~~~l~~E~~~r~Gaenm~~~~~~~~~~-~~~~~~~~~l~es~~ki~~Lr~~L~k~~~ 70 (72)
T cd00089 8 QSRLERLEKELSIELKVKEGAENLLRLYSDEKKK-KLLAEAEQMLRESKQKLELLKMQLEKLKQ 70 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567888888888888888877766666655322 34445566666788888888888877654
No 276
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=24.79 E-value=6.5e+02 Score=24.44 Aligned_cols=172 Identities=19% Similarity=0.279 Sum_probs=106.5
Q ss_pred hhhhhHHHhHHHHHHHhh--hhHHhHHHHHHhHHHHHHHHHHHhhh--hHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 025508 35 SSCNAETKRREALEITCN--TLKKENERARNSYTESLENLADQLER--KAKCQSLKEELKRVNDEHLSKEYELRKVIDSI 110 (251)
Q Consensus 35 s~~~aE~k~ReALE~tc~--~Lk~dneRLrklytEsL~~~a~qle~--rtk~qsLkEEL~r~n~e~lskE~Eh~raie~L 110 (251)
...+...+.+..+++.++ .-+.|-||. +-||+. |+....-.- .+-+| +.|..+|+..
T Consensus 175 ~~~~~~~~~~~i~es~vd~~eWklEvERV-----------~PqLKv~~~~d~kDWR~-------hleqm-~~~~~~I~~~ 235 (359)
T PF10498_consen 175 GDTEEKQKPEEIIESKVDPAEWKLEVERV-----------LPQLKVTIRADAKDWRS-------HLEQM-KQHKKSIESA 235 (359)
T ss_pred cccccccchhhcccccCCHHHHHHHHHHH-----------hhhheeeccCCcchHHH-------HHHHH-HHHHHHHHHh
Confidence 445566677777777765 345666664 333332 222111111 11112 3466777777
Q ss_pred hHHHHHhHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHh
Q 025508 111 KQDYAAKARDFEDQIRSLMLEKATNEATISN-LHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEK 189 (251)
Q Consensus 111 k~~~~~~i~~LE~qi~~~~~q~at~Ea~I~q-L~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeK 189 (251)
--........|-..|+..+-...+.|-.||+ |..-+...++-- .+|. ++.-+|+ .-.+--
T Consensus 236 ~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~----~~ls----~~~~~y~-----------~~s~~V 296 (359)
T PF10498_consen 236 LPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQ----DELS----EVQEKYK-----------QASEGV 296 (359)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHHH----HHHHHHH-----------HHhhHH
Confidence 7777777778888888888888888887764 333333222211 1221 2333333 234445
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHhhhhhhhhhhHHHHHHHHHhhhhhhHHHHhhh
Q 025508 190 NELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIMKLRKENEILKRKL 244 (251)
Q Consensus 190 n~l~~kLq~~ekElli~ktK~~eqqrD~tS~~hVetLKqKiMKLRKENE~LKR~l 244 (251)
+++.+.|..+-.+|---|..+.|.---+|-+.-|-.+||-|-|||+|.-.+--|+
T Consensus 297 ~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrI 351 (359)
T PF10498_consen 297 SERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRI 351 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 5666777777777777777888988889999999999999999999987665444
No 277
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=24.64 E-value=7.8e+02 Score=25.30 Aligned_cols=40 Identities=20% Similarity=0.389 Sum_probs=18.0
Q ss_pred HHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHH
Q 025508 156 LAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKE 202 (251)
Q Consensus 156 L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekE 202 (251)
+..++.+....+...+..+++.|++ +...+...|+.++..
T Consensus 99 id~~i~~av~~~~~~~~~~~~ql~~-------~~~~~~~~l~~l~~~ 138 (472)
T TIGR03752 99 IDQQIQQAVQSETQELTKEIEQLKS-------ERQQLQGLIDQLQRR 138 (472)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 3333333333444444445555543 334455555555444
No 278
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=24.40 E-value=4e+02 Score=22.60 Aligned_cols=44 Identities=20% Similarity=0.306 Sum_probs=23.2
Q ss_pred HHhhhhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHH
Q 025508 74 DQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFED 123 (251)
Q Consensus 74 ~qle~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~ 123 (251)
++-+-+.+...|++|++.. |+.+|.-+-.. |+++++....+|+.
T Consensus 41 ~~~~l~~Ei~~l~~E~~~i-----S~qDeFAkwaK-l~Rk~~kl~~el~~ 84 (161)
T PF04420_consen 41 EQRQLRKEILQLKRELNAI-----SAQDEFAKWAK-LNRKLDKLEEELEK 84 (161)
T ss_dssp HHHHHHHHHHHHHHHHTTS------TTTSHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC-----CcHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3444455555566665554 56667777765 34444444444443
No 279
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=24.21 E-value=7.2e+02 Score=24.73 Aligned_cols=112 Identities=19% Similarity=0.329 Sum_probs=0.0
Q ss_pred CCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHh
Q 025508 2 AATSDDGMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAK 81 (251)
Q Consensus 2 aatsDEemesLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk 81 (251)
..+....+..++.....|.+..-.--..++.|+..+-.|.+ .....|..+.-|..+ -.|-+|-+++- +-.+
T Consensus 207 ~~~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~------~~~~~LqEEr~R~er-LEeqlNd~~el--Hq~E 277 (395)
T PF10267_consen 207 SSQQNLGLQKILEELREIKESQSRLEESIEKLKEQYQREYQ------FILEALQEERYRYER-LEEQLNDLTEL--HQNE 277 (395)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhHHHHHH-HHHHHHHHHHH--HHHH
Q ss_pred hhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHH
Q 025508 82 CQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFE 122 (251)
Q Consensus 82 ~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE 122 (251)
..+||+||.-+-+..-=-=.|--|.|.-.=+.+.++|..||
T Consensus 278 i~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 278 IYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
No 280
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=23.95 E-value=86 Score=24.43 Aligned_cols=57 Identities=16% Similarity=0.317 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHH
Q 025508 136 EATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELN 193 (251)
Q Consensus 136 Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~ 193 (251)
+..|..|-.++......++.|...+......+ ..|......|++.|...|..-.++-
T Consensus 24 D~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l-~~~~~~~~~l~~~l~~aq~~a~~~~ 80 (131)
T PF05103_consen 24 DDFLDELAEELERLQRENAELKEEIEELQAQL-EELREEEESLQRALIQAQETADEIK 80 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhHHHHHHHhhhhhhhhHHHHH
Confidence 34566666666666666666666666666554 3477777888888877776655543
No 281
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.95 E-value=2.3e+02 Score=26.38 Aligned_cols=55 Identities=18% Similarity=0.329 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhhhhHHHHHHHHHhhhh
Q 025508 177 DLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIMKLRK 235 (251)
Q Consensus 177 dLkD~L~~EqEeKn~l~~kLq~~ekElli~ktK~~eqqrD~tS~~hVetLKqKiMKLRK 235 (251)
.|-||+.-=-..-..+.+|+.+|.-+|. |+-+|..-+-+.---..+||+.|++-|
T Consensus 16 sL~dai~~v~~r~dSve~KIskLDaeL~----k~~~Qi~k~R~gpaq~~~KqrAlrVLk 70 (218)
T KOG1655|consen 16 SLQDAIDSVNKRSDSVEKKISKLDAELC----KYKDQIKKTRPGPAQNALKQRALRVLK 70 (218)
T ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHH----HHHHHHHhcCCCcchhHHHHHHHHHHH
Confidence 4566665545555678888888888874 566777778888888889998887654
No 282
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=23.92 E-value=2e+02 Score=28.01 Aligned_cols=44 Identities=20% Similarity=0.384 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhh
Q 025508 119 RDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQ 162 (251)
Q Consensus 119 ~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~Leq 162 (251)
..+++||.-+-...++.-++|+-|..++++.+..|++++.+.+.
T Consensus 134 ~~F~~rf~~Ied~~~~kK~~I~~L~~qisaLdkqi~ai~Kkid~ 177 (308)
T PF06717_consen 134 QDFNYRFNQIEDEYNRKKNKIPGLNKQISALDKQIVAINKKIDR 177 (308)
T ss_pred hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777778888899999999999999999998887764
No 283
>PF13166 AAA_13: AAA domain
Probab=23.70 E-value=7.5e+02 Score=24.76 Aligned_cols=71 Identities=17% Similarity=0.304 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHH---------hhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhh
Q 025508 100 EYELRKVIDSIKQDYAAKARDFEDQIRSLMLE---------KATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMK 170 (251)
Q Consensus 100 E~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q---------~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~k 170 (251)
..+...+++.++.....-...|+.++...... ...--+.|..+...+..|...++.+..........+...
T Consensus 324 ~~~~~~~~~~l~~~l~~l~~~L~~K~~~~~~~~~~~~~~~~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~ 403 (712)
T PF13166_consen 324 KEELKSAIEALKEELEELKKALEKKIKNPSSPIELEEINEDIDELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWLH 403 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666555555666655333221 112234556666666667666776666666666555443
No 284
>smart00338 BRLZ basic region leucin zipper.
Probab=23.50 E-value=2.5e+02 Score=19.90 Aligned_cols=31 Identities=23% Similarity=0.393 Sum_probs=14.0
Q ss_pred HhHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 025508 116 AKARDFEDQIRSLMLEKATNEATISNLHQDL 146 (251)
Q Consensus 116 ~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dL 146 (251)
..+..||.++..+.-+-..=-+.|.+|..++
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~ 56 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRREL 56 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566665555444333333333333333
No 285
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=23.31 E-value=3.4e+02 Score=20.69 Aligned_cols=64 Identities=17% Similarity=0.278 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhH
Q 025508 99 KEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQV 163 (251)
Q Consensus 99 kE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV 163 (251)
.|.-...||+++. --.+++.+|..+-..+--+.+.=..-..+|+++-.+-..||+.|-.|+++|
T Consensus 9 LE~ki~~aveti~-~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~v 72 (72)
T PF06005_consen 9 LEEKIQQAVETIA-LLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLEEV 72 (72)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 3444455555442 245667777777777777777777788889999999999999998888875
No 286
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=23.14 E-value=2.3e+02 Score=19.51 Aligned_cols=39 Identities=13% Similarity=0.254 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHH
Q 025508 119 RDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLA 157 (251)
Q Consensus 119 ~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~ 157 (251)
.+|+.+|..+...-++++..|.+|+.+=-..|+-|..+-
T Consensus 9 ~~Ld~~I~~~e~~~~~~d~~l~~LKk~kL~LKDei~~ll 47 (49)
T PF04325_consen 9 HELDKEIHRLEKRPEPDDEELERLKKEKLRLKDEIYRLL 47 (49)
T ss_dssp HHHHHHHHHHHTT--S-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 458888888888778999999999999889998877664
No 287
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=23.02 E-value=4.8e+02 Score=22.25 Aligned_cols=71 Identities=20% Similarity=0.252 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHH---HHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhh
Q 025508 101 YELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQ---DLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQD 177 (251)
Q Consensus 101 ~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~---dLaahk~hid~L~~~LeqV~~eve~kY~~EIqd 177 (251)
.+|...|+..|.+|... +.++..+-.|..+.+.+|..|+. |....+..|..|-...++-. -.|..+|.+
T Consensus 9 ~~~gk~i~~~K~~~~~~----~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~----~~~e~~l~~ 80 (155)
T PF06810_consen 9 AENGKDIEAPKAKVDKV----KEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAK----EEYEAKLAQ 80 (155)
T ss_pred HHccCcHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 34555565555554433 55666677777777777777776 66666666666666554432 334444444
Q ss_pred hH
Q 025508 178 LK 179 (251)
Q Consensus 178 Lk 179 (251)
++
T Consensus 81 ~~ 82 (155)
T PF06810_consen 81 MK 82 (155)
T ss_pred HH
Confidence 43
No 288
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=22.79 E-value=5.1e+02 Score=22.47 Aligned_cols=104 Identities=11% Similarity=0.106 Sum_probs=0.0
Q ss_pred hhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHH----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHH
Q 025508 78 RKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKAR----DFEDQIRSLMLEKATNEATISNLHQDLAAHKMHM 153 (251)
Q Consensus 78 ~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~----~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hi 153 (251)
+.+..+....|+.++...+...+..+++.-+. ++.++.++. .++...+.+..+.+.-++-..+|...+.....|+
T Consensus 41 ~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~-r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~ 119 (158)
T PF09744_consen 41 LASRNQEHEVELELLREDNEQLETQYEREKEL-RKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQS 119 (158)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q ss_pred HHHHhhhhh---HHHhhhhhhhhhhhhhHHHH
Q 025508 154 QTLAKKLDQ---VKFDVEMKYNLEIQDLKDCL 182 (251)
Q Consensus 154 d~L~~~Leq---V~~eve~kY~~EIqdLkD~L 182 (251)
.-|.-+=.+ -...++-+|.--|+-+++.+
T Consensus 120 ~rlee~e~~l~~e~~~l~er~~e~l~~~~e~v 151 (158)
T PF09744_consen 120 SRLEEREAELKKEYNRLHERERELLRKLKEHV 151 (158)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 289
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=22.70 E-value=5.9e+02 Score=23.19 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=6.8
Q ss_pred hhhHHhHHHHHHhHH
Q 025508 52 NTLKKENERARNSYT 66 (251)
Q Consensus 52 ~~Lk~dneRLrklyt 66 (251)
+.|-.|...-+++|.
T Consensus 51 ~ElI~ELkqsKklyd 65 (196)
T PF15272_consen 51 QELINELKQSKKLYD 65 (196)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444445544
No 290
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=22.69 E-value=4.9e+02 Score=22.29 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHH
Q 025508 24 KRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARN 63 (251)
Q Consensus 24 k~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrk 63 (251)
-++..+|.+|......=++.+.-|+.-..++.++++-|.+
T Consensus 48 En~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k 87 (140)
T PF10473_consen 48 ENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDK 87 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555554443
No 291
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=22.62 E-value=3.8e+02 Score=20.90 Aligned_cols=64 Identities=17% Similarity=0.393 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh-------hhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhh
Q 025508 16 FDQIYEDFKRAISEVQLLRS-------SCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERK 79 (251)
Q Consensus 16 Fd~i~e~fk~g~~Eiq~Lrs-------~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~r 79 (251)
+|+|=.+|-....|++++++ ++++=+.==+.+-.++-.|..--..++.-|.|-++.+-.+|+-|
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~r 76 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666666666666666654 33333333455666777777777777778888777777777655
No 292
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=22.40 E-value=4.7e+02 Score=21.94 Aligned_cols=48 Identities=21% Similarity=0.255 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHH-HHHHHhhHHHHHHHhhhhhHHHh
Q 025508 119 RDFEDQIRSLMLEKATNEATISNLH-QDLAAHKMHMQTLAKKLDQVKFD 166 (251)
Q Consensus 119 ~~LE~qi~~~~~q~at~Ea~I~qL~-~dLaahk~hid~L~~~LeqV~~e 166 (251)
..|..++..+..+....|..-.-|+ -|--+.+.-.+.|+.++|....+
T Consensus 16 ~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~e 64 (177)
T PF13870_consen 16 ITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKE 64 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555444444 45556666666666666665543
No 293
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.39 E-value=6.2e+02 Score=23.35 Aligned_cols=65 Identities=25% Similarity=0.399 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHHh------hhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHH
Q 025508 117 KARDFEDQIRSLMLEK------ATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLL 183 (251)
Q Consensus 117 ~i~~LE~qi~~~~~q~------at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~ 183 (251)
.|..+|+.+-++..+. ++..+.|..|..-+.-|+-||.-|-.=|..+..+- ... ..|.++||.|-
T Consensus 137 QiE~~E~E~E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L~N~~-l~~-e~V~~ikedie 207 (233)
T PF04065_consen 137 QIEQLEAEIESLSSQKKKKKKDSTKQERIEELESRIERHKFHIEKLELLLRLLDNDE-LDP-EQVEDIKEDIE 207 (233)
T ss_pred HHHHHHHHHHHHHHhhccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCH-HHHHHHHHHHH
Confidence 3445555555555432 47899999999999999999998877666665542 222 56777777764
No 294
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.26 E-value=4e+02 Score=25.85 Aligned_cols=25 Identities=4% Similarity=0.161 Sum_probs=18.1
Q ss_pred HHhHHHHHhHHHHHHHHHHHHHHhh
Q 025508 109 SIKQDYAAKARDFEDQIRSLMLEKA 133 (251)
Q Consensus 109 ~Lk~~~~~~i~~LE~qi~~~~~q~a 133 (251)
.+...|.+.+..|.+++...+.+.|
T Consensus 267 ~~ek~Hke~v~qL~~k~~~~lk~~a 291 (305)
T KOG3990|consen 267 ELEKKHKERVQQLQKKKEESLKAIA 291 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677778888888877777655
No 295
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=22.24 E-value=9.5e+02 Score=25.43 Aligned_cols=107 Identities=16% Similarity=0.301 Sum_probs=54.6
Q ss_pred hHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHh-hhhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHH
Q 025508 43 RREALEITCNTLKKENERARNSYTESLENLADQL-ERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDF 121 (251)
Q Consensus 43 ~ReALE~tc~~Lk~dneRLrklytEsL~~~a~ql-e~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~L 121 (251)
-|++..+-..+|++..++|.. -+++|-.-+ .+..|-+.+--.|+++++++..+|.|- |.|+.. +-+|
T Consensus 253 e~ek~~~~~eslre~~~~L~~----D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~----e~lq~~----~d~L 320 (581)
T KOG0995|consen 253 EREKDPGKEESLREKKARLQD----DVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEI----EKLQKE----NDEL 320 (581)
T ss_pred HHhcCcchHHHHHHHHHHHHh----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHH----HHHH
Confidence 344444555555555444432 233332111 234556777777888888888777763 344433 3334
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHH
Q 025508 122 EDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKF 165 (251)
Q Consensus 122 E~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~ 165 (251)
-++|. -+--+-+-|.+..+|.-+.+--+..+...+|....
T Consensus 321 k~~Ie----~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k 360 (581)
T KOG0995|consen 321 KKQIE----LQGISGEDVERMNLERNKLKRELNKIQSELDRLSK 360 (581)
T ss_pred HHHHH----hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44432 12334445566666666666555555554444333
No 296
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=21.85 E-value=3.7e+02 Score=20.50 Aligned_cols=48 Identities=15% Similarity=0.102 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhh
Q 025508 120 DFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDV 167 (251)
Q Consensus 120 ~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~ev 167 (251)
.||.+|-.++.--.-=.+.=..|++.+++..+.=+.|..+.+.-+..|
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rv 51 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKV 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333222223333444444444444444444444444443
No 297
>COG5570 Uncharacterized small protein [Function unknown]
Probab=21.67 E-value=2.8e+02 Score=20.98 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=42.3
Q ss_pred HHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHh
Q 025508 106 VIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAK 158 (251)
Q Consensus 106 aie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~ 158 (251)
+||+.=...+.+-+.||..|..++---++++-.|..|+.---+.|..|.-|..
T Consensus 2 aieshl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka 54 (57)
T COG5570 2 AIESHLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKA 54 (57)
T ss_pred cHHHHHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555555666778999999999999999999999998887788887776654
No 298
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=21.57 E-value=3.5e+02 Score=20.21 Aligned_cols=46 Identities=20% Similarity=0.293 Sum_probs=21.5
Q ss_pred HhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhh
Q 025508 116 AKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLD 161 (251)
Q Consensus 116 ~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~Le 161 (251)
.+|..|.++|+.|--+..-=..-|+-|+.|+.+-|.--.--+.|||
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666544333333334444444333333333344444
No 299
>PF10792 DUF2605: Protein of unknown function (DUF2605); InterPro: IPR019728 This entry represents a protein conserved in Cyanobacteria. The function is not known.
Probab=21.52 E-value=1.6e+02 Score=24.29 Aligned_cols=13 Identities=38% Similarity=0.754 Sum_probs=10.8
Q ss_pred HHHHHhhHHHHHH
Q 025508 9 MESLLSDFDQIYE 21 (251)
Q Consensus 9 mesLL~~Fd~i~e 21 (251)
+++||.||+.-|.
T Consensus 12 L~pLLeDF~yWF~ 24 (98)
T PF10792_consen 12 LEPLLEDFQYWFS 24 (98)
T ss_pred HHHHHHHHHHHHH
Confidence 6789999998876
No 300
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=21.50 E-value=1e+02 Score=23.46 Aligned_cols=23 Identities=43% Similarity=0.618 Sum_probs=14.5
Q ss_pred hHHHHHHHHHhhhh-------hhHHHHhhh
Q 025508 222 SVETLKLKIMKLRK-------ENEILKRKL 244 (251)
Q Consensus 222 hVetLKqKiMKLRK-------ENE~LKR~l 244 (251)
-|++||.+|..|-. ||..||...
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 37778777776654 555565543
No 301
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=21.41 E-value=7.6e+02 Score=24.02 Aligned_cols=170 Identities=25% Similarity=0.347 Sum_probs=92.0
Q ss_pred HHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHH
Q 025508 45 EALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQ 124 (251)
Q Consensus 45 eALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~q 124 (251)
+-|...+.+|.++|.-|+. .---+|.+|-.|-+|++.+....+.+..--.-+=|.+--..-.+|..|...
T Consensus 23 ~~l~~~~~sL~qen~~Lk~----------El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~ke 92 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKR----------ELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKE 92 (310)
T ss_pred HHHHHHHHHHHHHhHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888888888877764 111367889999999999888877765444433333333333334444443
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHH-hHHHHHHHHHHHHHH
Q 025508 125 IRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEE-KNELNKRVQDLEKEL 203 (251)
Q Consensus 125 i~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEe-Kn~l~~kLq~~ekEl 203 (251)
-..+...--..|-++ +..|..+|.++..+ =-+|--.|.-|||- =|.|.+++..++++.
T Consensus 93 Ke~L~~~~e~EEE~l-------------tn~L~rkl~qLr~E--------K~~lE~~Le~EqE~~V~kL~k~i~~Le~e~ 151 (310)
T PF09755_consen 93 KETLALKYEQEEEFL-------------TNDLSRKLNQLRQE--------KVELENQLEQEQEYLVNKLQKKIERLEKEK 151 (310)
T ss_pred HHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHH--------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 333332222222221 24555555555443 12334444444444 355555555555543
Q ss_pred HHhhhhHHHhhhh----hhh------hhhHHHHHHHHHhhhhhhHHHHhhhhh
Q 025508 204 LMNRTKMAEHNRD----LTS------VRSVETLKLKIMKLRKENEILKRKLNS 246 (251)
Q Consensus 204 li~ktK~~eqqrD----~tS------~~hVetLKqKiMKLRKENE~LKR~l~~ 246 (251)
..+-.-.++.+. +-+ ---|-+|--++.+|..|+..|.++|..
T Consensus 152 -~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 152 -SAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred -HHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 111111112111 000 012445777889999999999999874
No 302
>PF11704 Folliculin: Vesicle coat protein involved in Golgi to plasma membrane transport; InterPro: IPR021713 In yeast cells this family functions in the regulated delivery of Gap1p (a general amino acid permease) to the cell surface, perhaps as a component of a post-Golgi secretory-vesicle coat complex []. Birt-Hogg-Dube (BHD)4 syndrome is an autosomal dominant disorder characterised by hamartomas of skin follicles, lung cysts, spontaneous pneumothorax, and renal cell carcinoma. Folliculin is the protein from the BHD4 gene and is found to have no significant homology to any other human proteins. It is expressed in most tissues. These same symptoms also occur in TSC or tuberous sclerosis complex, suggesting that the same pathway is involved, and it is likely that the target is the down-stream Tor2 - an essential gene. Folliculin appears to bind Tor2, and down-regulation of Tor2 activity leads to up-regulation of nitrogen responsive genes including membrane transporters and amino acid permeases [].
Probab=21.41 E-value=78 Score=27.33 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=30.0
Q ss_pred CCCChhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q 025508 2 AATSDDGMESLLSDFDQIYEDFKRAISEVQLLRSSC 37 (251)
Q Consensus 2 aatsDEemesLL~~Fd~i~e~fk~g~~Eiq~Lrs~~ 37 (251)
++.+++.|.-|+.+|+-|...|+.-+..||..-..-
T Consensus 71 i~l~~d~~~~L~~~w~~i~~~f~~ii~~iq~~a~~~ 106 (167)
T PF11704_consen 71 IVLSDDKMKKLLNNWPFISSHFSKIIEWIQQKAEKV 106 (167)
T ss_pred EEEeCChhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788899999999999999999999875543
No 303
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=21.40 E-value=2.4e+02 Score=27.05 Aligned_cols=45 Identities=16% Similarity=0.218 Sum_probs=22.9
Q ss_pred HhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhh
Q 025508 116 AKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKL 160 (251)
Q Consensus 116 ~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~L 160 (251)
..|.+||+.+..+.......+..|..|...|....+++.--+=|+
T Consensus 151 eris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnNiRI 195 (370)
T PF02994_consen 151 ERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNNIRI 195 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEE
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCceeE
Confidence 345555555555444444445555555555555555554433333
No 304
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=21.35 E-value=2.3e+02 Score=26.17 Aligned_cols=41 Identities=34% Similarity=0.522 Sum_probs=32.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhhhhHHHHHHHH
Q 025508 184 LEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKI 230 (251)
Q Consensus 184 ~EqEeKn~l~~kLq~~ekElli~ktK~~eqqrD~tS~~hVetLKqKi 230 (251)
+=++||.+|...|-.+|.|+--.|.=++..+ ||..-||.|+
T Consensus 41 LSe~Ekeelr~EL~kvEeEI~TLrqVLaAKe------rH~~ELKRKL 81 (208)
T KOG4010|consen 41 LSEEEKEELRTELAKVEEEIVTLRQVLAAKE------RHAAELKRKL 81 (208)
T ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHh
Confidence 3456777999999999999888888887765 4777777775
No 305
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=21.26 E-value=6.6e+02 Score=23.21 Aligned_cols=24 Identities=8% Similarity=0.292 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhh
Q 025508 137 ATISNLHQDLAAHKMHMQTLAKKL 160 (251)
Q Consensus 137 a~I~qL~~dLaahk~hid~L~~~L 160 (251)
..|..|+..+++.+..|+....++
T Consensus 242 P~v~~l~~~i~~l~~~i~~e~~~i 265 (362)
T TIGR01010 242 PQVPSLQARIKSLRKQIDEQRNQL 265 (362)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHh
Confidence 445556666666666665555444
No 306
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=20.94 E-value=1e+03 Score=25.39 Aligned_cols=83 Identities=16% Similarity=0.220 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhH---------------HHHHHHhhhhhHH
Q 025508 100 EYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKM---------------HMQTLAKKLDQVK 164 (251)
Q Consensus 100 E~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~---------------hid~L~~~LeqV~ 164 (251)
-..+.+.+..++..|+..++..-+.|+-++.+.+..-..|-.|.-+.+..+. -|++++..|.+ .
T Consensus 212 ~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~-k 290 (629)
T KOG0963|consen 212 IEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQ-K 290 (629)
T ss_pred HHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhH-H
Confidence 4556777888899999999999999999999999888888777666554432 34555555555 3
Q ss_pred HhhhhhhhhhhhhhHHHHH
Q 025508 165 FDVEMKYNLEIQDLKDCLL 183 (251)
Q Consensus 165 ~eve~kY~~EIqdLkD~L~ 183 (251)
..+-.+-..+|+-++-.+.
T Consensus 291 d~~i~~L~~di~~~~~S~~ 309 (629)
T KOG0963|consen 291 DSEIAQLSNDIERLEASLV 309 (629)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555543
No 307
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=20.87 E-value=95 Score=21.65 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHhhhhhhHHHHhhhhhc
Q 025508 221 RSVETLKLKIMKLRKENEILKRKLNSS 247 (251)
Q Consensus 221 ~hVetLKqKiMKLRKENE~LKR~l~~s 247 (251)
.++..|.+.+..|..+|..|...+..-
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888887776543
No 308
>PRK10698 phage shock protein PspA; Provisional
Probab=20.72 E-value=6.1e+02 Score=22.64 Aligned_cols=34 Identities=15% Similarity=0.294 Sum_probs=14.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhh
Q 025508 128 LMLEKATNEATISNLHQDLAAHKMHMQTLAKKLD 161 (251)
Q Consensus 128 ~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~Le 161 (251)
+|.++...+..|..|+..+.+....++-|...+.
T Consensus 90 AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~ 123 (222)
T PRK10698 90 ALIEKQKLTDLIATLEHEVTLVDETLARMKKEIG 123 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444443333
No 309
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.67 E-value=2.1e+02 Score=20.09 Aligned_cols=27 Identities=19% Similarity=0.415 Sum_probs=13.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 025508 9 MESLLSDFDQIYEDFKRAISEVQLLRS 35 (251)
Q Consensus 9 mesLL~~Fd~i~e~fk~g~~Eiq~Lrs 35 (251)
-+.|=++||.+-.+|..-..|-+.|++
T Consensus 7 y~~LK~~yd~Lk~~~~~L~~E~~~L~a 33 (45)
T PF02183_consen 7 YDALKASYDSLKAEYDSLKKENEKLRA 33 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555544444444443
No 310
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=20.66 E-value=3.5e+02 Score=22.39 Aligned_cols=46 Identities=22% Similarity=0.188 Sum_probs=31.2
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhh
Q 025508 88 ELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKA 133 (251)
Q Consensus 88 EL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~a 133 (251)
++...+.++...+......|..++..|+..+..|.++|..+.....
T Consensus 11 ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~ 56 (149)
T PF07352_consen 11 KIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQ 56 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555556666777888888888888888888777655443
No 311
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.64 E-value=5.8e+02 Score=25.49 Aligned_cols=61 Identities=26% Similarity=0.329 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhhhhHHHHHHHHHhhhhhhHHHHhhhhh
Q 025508 177 DLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIMKLRKENEILKRKLNS 246 (251)
Q Consensus 177 dLkD~L~~EqEeKn~l~~kLq~~ekElli~ktK~~eqqrD~tS~~hVetLKqKiMKLRKENE~LKR~l~~ 246 (251)
+++-....|-+.--.++.-|..-+.||.+...|+++- ++||+|..-.|-+-.++|+++...
T Consensus 218 klR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~---------~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 218 KLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAM---------KETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHH---------HHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3344444444444455556667778888888888753 689999999999999999998865
No 312
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=20.60 E-value=7.2e+02 Score=23.42 Aligned_cols=133 Identities=16% Similarity=0.271 Sum_probs=64.3
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHH
Q 025508 8 GMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKE 87 (251)
Q Consensus 8 emesLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkE 87 (251)
.|++....++.|..-|.+.+.+.-.+...+..--++=..+.---..+..++. --..-++|.++|=-
T Consensus 16 ~l~~~eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~--------------k~~~~k~KLE~LCR 81 (309)
T PF09728_consen 16 KLSSPEEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELS--------------KAILAKSKLESLCR 81 (309)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHH
Confidence 3444455677788888888877777655544333333333333333333322 22344667777766
Q ss_pred HHHhhhhhhh----hhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhh
Q 025508 88 ELKRVNDEHL----SKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLD 161 (251)
Q Consensus 88 EL~r~n~e~l----skE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~Le 161 (251)
||-+.|..+. ..-.+....-..+...|...+.++.+++. .+...-.++..+-......+..|+..-+
T Consensus 82 ELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~~e-------e~~~~~~k~~~eN~~L~eKlK~l~eQye 152 (309)
T PF09728_consen 82 ELQKQNKKLKEESKRRAREEEEKRKELSEKFQATLKDIQAQME-------EQSERNIKLREENEELREKLKSLIEQYE 152 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666664443 22222222223445555555555555443 3333333344444444444444444333
No 313
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=20.43 E-value=5.9e+02 Score=22.33 Aligned_cols=39 Identities=21% Similarity=0.394 Sum_probs=22.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHH
Q 025508 126 RSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVK 164 (251)
Q Consensus 126 ~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~ 164 (251)
+.++.++...+..+..|...+..++.+++.|..+|....
T Consensus 88 r~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~ 126 (219)
T TIGR02977 88 RAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQ 126 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666666666655554433
No 314
>PF15294 Leu_zip: Leucine zipper
Probab=20.32 E-value=7.6e+02 Score=23.59 Aligned_cols=67 Identities=31% Similarity=0.373 Sum_probs=48.8
Q ss_pred HHHHHHHhH--HHHHHHHHHHHHHHHhhhhHHHhhhhhhhh-----------------hhHHHHHHHHHhhhhhhHHHHh
Q 025508 182 LLLEQEEKN--ELNKRVQDLEKELLMNRTKMAEHNRDLTSV-----------------RSVETLKLKIMKLRKENEILKR 242 (251)
Q Consensus 182 L~~EqEeKn--~l~~kLq~~ekElli~ktK~~eqqrD~tS~-----------------~hVetLKqKiMKLRKENE~LKR 242 (251)
-+++|.+|- .|..-+..+|+.-++-.+.-.|.+.=++++ --++-|.--|-.|+.||+.||-
T Consensus 67 ql~~qAek~~lkl~~diselEn~eLLe~i~~~E~~~~~~~~~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~ 146 (278)
T PF15294_consen 67 QLFSQAEKWYLKLQTDISELENRELLEQIAEFEKQEFTSSFKPNQETSKPKLEPLNESGGSELLNKEIDRLQEENEKLKE 146 (278)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhhcccCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 346777777 777778888888777777766666655554 0122267778899999999999
Q ss_pred hhhhcc
Q 025508 243 KLNSSS 248 (251)
Q Consensus 243 ~l~~s~ 248 (251)
|+.+.+
T Consensus 147 rl~~le 152 (278)
T PF15294_consen 147 RLKSLE 152 (278)
T ss_pred HHHHHH
Confidence 997754
No 315
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=20.30 E-value=7.8e+02 Score=23.70 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=16.6
Q ss_pred hhhHHHHHHHHHHHHHhhHHHHHH
Q 025508 133 ATNEATISNLHQDLAAHKMHMQTL 156 (251)
Q Consensus 133 at~Ea~I~qL~~dLaahk~hid~L 156 (251)
+.-+..|.+|+.+++..++.+..+
T Consensus 239 ~~~~~~i~~l~~~i~~~~~~~~~~ 262 (457)
T TIGR01000 239 ATIQQQIDQLQKSIASYQVQKAGL 262 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444666777777777777777765
Done!