Query 025508
Match_columns 251
No_of_seqs 16 out of 18
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 11:45:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025508.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025508hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 97.0 0.081 2.8E-06 41.5 31.9 55 8-62 7-61 (284)
2 3ol1_A Vimentin; structural ge 97.0 0.0082 2.8E-07 47.5 10.6 85 14-126 34-118 (119)
3 1i84_S Smooth muscle myosin he 96.2 0.018 6E-07 59.3 9.9 6 175-180 1041-1046(1184)
4 1i84_S Smooth muscle myosin he 96.2 0.022 7.4E-07 58.6 10.2 34 29-62 865-898 (1184)
5 3ol1_A Vimentin; structural ge 96.1 0.19 6.4E-06 39.7 13.4 105 107-219 11-115 (119)
6 1c1g_A Tropomyosin; contractIl 95.3 0.76 2.6E-05 35.9 32.3 21 224-244 261-281 (284)
7 3swk_A Vimentin; cytoskeleton, 94.5 0.43 1.5E-05 36.0 10.0 75 8-92 8-82 (86)
8 3oja_B Anopheles plasmodium-re 93.9 1.4 4.9E-05 40.4 14.2 87 118-204 458-547 (597)
9 2dfs_A Myosin-5A; myosin-V, in 92.2 8.9 0.00031 39.8 18.5 13 20-32 835-847 (1080)
10 2dfs_A Myosin-5A; myosin-V, in 91.7 6.1 0.00021 41.0 16.6 57 112-168 987-1043(1080)
11 3tnu_B Keratin, type II cytosk 90.8 3.1 0.0001 32.7 10.6 56 78-141 13-68 (129)
12 3oja_B Anopheles plasmodium-re 90.7 9.9 0.00034 34.9 15.9 21 194-214 544-564 (597)
13 3tnu_A Keratin, type I cytoske 90.6 2.2 7.6E-05 33.7 9.7 20 78-97 15-34 (131)
14 3swk_A Vimentin; cytoskeleton, 88.7 6.2 0.00021 29.6 10.4 83 118-208 2-84 (86)
15 3tnu_B Keratin, type II cytosk 87.8 6.3 0.00021 30.9 10.4 97 113-210 12-115 (129)
16 3l4q_C Phosphatidylinositol 3- 85.1 17 0.00057 30.9 12.3 45 13-82 30-74 (170)
17 3na7_A HP0958; flagellar bioge 84.7 18 0.00062 30.9 19.0 85 118-202 41-126 (256)
18 3tnu_A Keratin, type I cytoske 84.6 6.5 0.00022 31.0 9.0 51 159-210 63-117 (131)
19 3vmx_A Voltage-gated hydrogen 78.4 3.6 0.00012 29.0 4.7 30 36-65 12-41 (48)
20 2v71_A Nuclear distribution pr 78.3 32 0.0011 29.6 14.3 124 78-202 36-169 (189)
21 3a7p_A Autophagy protein 16; c 77.7 10 0.00036 31.9 8.2 57 138-202 69-125 (152)
22 2ocy_A RAB guanine nucleotide 77.0 32 0.0011 28.8 13.4 103 14-154 44-146 (154)
23 3u1c_A Tropomyosin alpha-1 cha 76.5 23 0.00079 27.0 11.2 23 80-102 9-31 (101)
24 2eqb_B RAB guanine nucleotide 76.4 26 0.00089 27.5 12.3 66 7-76 5-70 (97)
25 2v4h_A NF-kappa-B essential mo 75.6 19 0.00066 28.9 8.9 48 116-163 24-74 (110)
26 2e7s_A RAB guanine nucleotide 74.9 17 0.00058 30.0 8.6 65 8-76 26-90 (135)
27 2jee_A YIIU; FTSZ, septum, coi 74.7 24 0.00083 26.9 8.9 63 14-76 6-78 (81)
28 3s4r_A Vimentin; alpha-helix, 73.9 27 0.00091 26.5 10.7 46 164-209 47-92 (93)
29 3jsv_C NF-kappa-B essential mo 71.6 30 0.001 27.1 8.9 48 116-163 2-52 (94)
30 3a7o_A Autophagy protein 16; c 71.3 17 0.00059 27.6 7.2 59 136-202 17-75 (75)
31 3oja_A Leucine-rich immune mol 70.4 25 0.00087 31.7 9.5 110 95-211 364-473 (487)
32 3efg_A Protein SLYX homolog; x 70.3 9.3 0.00032 28.4 5.6 52 116-167 7-58 (78)
33 3na7_A HP0958; flagellar bioge 69.9 51 0.0017 28.1 19.9 53 116-168 104-156 (256)
34 2ocy_A RAB guanine nucleotide 68.1 52 0.0018 27.5 15.4 123 121-244 4-131 (154)
35 2p22_C Protein SRN2; endosome, 67.9 50 0.0017 28.0 10.3 36 210-245 147-182 (192)
36 3ghg_A Fibrinogen alpha chain; 67.1 90 0.0031 31.1 13.1 37 51-93 66-102 (562)
37 3vkg_A Dynein heavy chain, cyt 66.1 2.1E+02 0.0072 33.7 22.5 31 31-61 1916-1946(3245)
38 3o0z_A RHO-associated protein 65.5 63 0.0021 27.4 15.1 59 79-152 96-162 (168)
39 2jee_A YIIU; FTSZ, septum, coi 64.0 22 0.00077 27.0 6.6 53 107-163 29-81 (81)
40 1f5n_A Interferon-induced guan 62.5 1.1E+02 0.0039 29.7 12.9 87 39-133 491-584 (592)
41 3efg_A Protein SLYX homolog; x 62.3 30 0.001 25.6 6.9 52 114-165 12-63 (78)
42 1go4_E MAD1 (mitotic arrest de 61.1 6.4 0.00022 31.0 3.2 30 217-246 8-37 (100)
43 3qh9_A Liprin-beta-2; coiled-c 59.7 52 0.0018 25.2 8.0 61 80-148 19-79 (81)
44 3ghg_A Fibrinogen alpha chain; 57.8 1.2E+02 0.0041 30.2 12.1 25 44-68 52-76 (562)
45 1l8d_A DNA double-strand break 57.8 55 0.0019 24.2 11.2 36 167-202 65-100 (112)
46 1ez3_A Syntaxin-1A; three heli 57.0 35 0.0012 25.4 6.7 60 49-115 19-78 (127)
47 3hhm_B NISH2 P85alpha; PI3KCA, 56.7 1.2E+02 0.0042 27.9 15.9 48 11-83 137-184 (373)
48 1m1j_B Fibrinogen beta chain; 56.2 1.4E+02 0.005 28.6 14.3 63 125-204 130-192 (464)
49 2v66_B Nuclear distribution pr 56.0 75 0.0026 25.2 12.9 95 93-195 5-109 (111)
50 3rkg_A Magnesium transporter M 55.4 1.1E+02 0.0037 27.1 10.6 49 37-86 121-170 (261)
51 3vem_A Helicase protein MOM1; 54.9 83 0.0029 25.4 9.9 25 101-125 64-88 (115)
52 2e7s_A RAB guanine nucleotide 54.7 46 0.0016 27.4 7.5 106 119-236 4-111 (135)
53 1nfn_A Apolipoprotein E3; lipi 54.1 95 0.0032 25.8 11.4 87 144-245 66-160 (191)
54 3nmd_A CGMP dependent protein 54.0 46 0.0016 24.9 6.7 46 118-163 21-66 (72)
55 1nfn_A Apolipoprotein E3; lipi 53.1 98 0.0034 25.7 10.5 78 150-232 105-183 (191)
56 3a2a_A Voltage-gated hydrogen 52.4 11 0.00038 27.4 3.0 25 43-67 26-50 (58)
57 2v66_B Nuclear distribution pr 51.8 40 0.0014 26.8 6.5 57 190-248 6-62 (111)
58 3u1c_A Tropomyosin alpha-1 cha 51.6 77 0.0026 24.0 11.9 14 188-201 87-100 (101)
59 2eqb_B RAB guanine nucleotide 50.9 87 0.003 24.5 10.5 71 171-246 24-94 (97)
60 2yy0_A C-MYC-binding protein; 50.9 13 0.00045 25.9 3.1 24 223-246 28-51 (53)
61 3u59_A Tropomyosin beta chain; 50.5 77 0.0026 23.8 11.7 24 79-102 8-31 (101)
62 2efr_A General control protein 49.9 1.1E+02 0.0038 25.4 17.3 104 99-203 26-135 (155)
63 2y3a_B Phosphatidylinositol 3- 44.9 1.7E+02 0.0059 26.2 10.4 46 13-83 31-76 (302)
64 1kd8_B GABH BLL, GCN4 acid bas 43.8 39 0.0013 22.5 4.4 34 117-150 2-35 (36)
65 1gs9_A Apolipoprotein E, APOE4 43.0 1.1E+02 0.0039 25.0 8.1 47 142-188 64-110 (165)
66 1wt6_A Myotonin-protein kinase 42.6 66 0.0023 24.6 6.1 22 83-104 27-48 (81)
67 2fxo_A Myosin heavy chain, car 41.9 1.2E+02 0.0042 23.6 17.0 45 18-62 10-54 (129)
68 3a7p_A Autophagy protein 16; c 41.3 1.6E+02 0.0054 24.7 9.6 59 104-166 67-125 (152)
69 4ad8_A DNA repair protein RECN 41.3 2.1E+02 0.0072 26.2 17.8 43 14-56 179-221 (517)
70 3iox_A AGI/II, PA; alpha helix 41.2 2.7E+02 0.0091 27.3 13.4 78 74-151 3-80 (497)
71 2akf_A Coronin-1A; coiled coil 40.8 22 0.00074 23.1 2.7 31 140-170 2-32 (32)
72 1am9_A Srebp-1A, protein (ster 39.7 63 0.0022 23.5 5.5 64 183-248 12-77 (82)
73 1x8y_A Lamin A/C; structural p 39.3 1.1E+02 0.0039 22.5 7.6 40 104-150 16-55 (86)
74 3o0z_A RHO-associated protein 39.1 1.8E+02 0.0061 24.7 15.8 85 114-202 46-133 (168)
75 3lay_A Zinc resistance-associa 38.9 1.1E+02 0.0038 25.6 7.6 38 118-155 94-131 (175)
76 1ci6_A Transcription factor AT 37.5 86 0.0029 22.0 5.7 39 29-67 24-62 (63)
77 1go4_E MAD1 (mitotic arrest de 37.3 22 0.00077 27.9 2.9 26 225-250 72-97 (100)
78 2dq0_A Seryl-tRNA synthetase; 37.0 1.1E+02 0.0038 28.6 8.1 31 12-42 29-59 (455)
79 3i00_A HIP-I, huntingtin-inter 36.8 1.6E+02 0.0054 23.4 9.5 31 81-111 16-46 (120)
80 3nmd_A CGMP dependent protein 36.7 1.1E+02 0.0038 22.8 6.4 34 118-151 35-68 (72)
81 1nkp_B MAX protein, MYC proto- 35.9 1E+02 0.0035 22.1 6.1 27 222-248 55-81 (83)
82 1deq_A Fibrinogen (alpha chain 35.9 3E+02 0.01 26.3 12.0 28 47-74 65-92 (390)
83 1lwu_C Fibrinogen gamma chain; 35.6 89 0.003 28.6 7.0 21 137-157 26-46 (323)
84 3mq7_A Bone marrow stromal ant 35.2 1.8E+02 0.0063 23.7 11.4 25 76-100 21-45 (121)
85 3mq7_A Bone marrow stromal ant 34.3 1.9E+02 0.0065 23.6 12.2 104 128-248 3-112 (121)
86 1uru_A Amphiphysin; endocytosi 34.3 1.8E+02 0.0062 23.4 18.0 31 4-34 34-64 (244)
87 1dh3_A Transcription factor CR 33.6 35 0.0012 23.6 3.1 28 221-248 22-49 (55)
88 1s94_A S-syntaxin; three helix 33.3 1.8E+02 0.0062 23.1 8.5 60 48-114 49-108 (180)
89 1jcd_A Major outer membrane li 32.9 1.3E+02 0.0043 21.1 6.7 25 174-198 26-50 (52)
90 3i00_A HIP-I, huntingtin-inter 32.8 1.8E+02 0.0063 23.0 8.9 49 107-155 17-65 (120)
91 3c9i_A Tail needle protein GP2 32.6 1.8E+02 0.006 26.1 8.1 74 103-176 82-158 (242)
92 2efr_A General control protein 30.1 2.4E+02 0.0081 23.4 17.8 76 79-155 41-116 (155)
93 3hnw_A Uncharacterized protein 29.4 2.2E+02 0.0075 22.8 10.1 91 150-247 27-129 (138)
94 1x79_B RAB GTPase binding effe 29.0 2.2E+02 0.0075 22.7 12.1 86 78-167 4-89 (112)
95 1t2k_D Cyclic-AMP-dependent tr 29.0 1.4E+02 0.0048 20.4 6.5 41 112-152 18-58 (61)
96 3swy_A Cyclic nucleotide-gated 28.6 1.4E+02 0.0049 20.4 5.5 42 191-234 2-43 (46)
97 3w03_C DNA repair protein XRCC 28.4 1.1E+02 0.0039 26.0 6.0 29 44-72 154-182 (184)
98 3u59_A Tropomyosin beta chain; 28.1 1.9E+02 0.0064 21.6 12.2 14 188-201 87-100 (101)
99 2fic_A Bridging integrator 1; 27.8 2.5E+02 0.0086 23.0 22.0 29 4-32 49-77 (251)
100 4etp_A Kinesin-like protein KA 27.2 1.2E+02 0.0042 27.9 6.5 54 145-199 4-57 (403)
101 1jnm_A Proto-oncogene C-JUN; B 27.2 1.4E+02 0.0046 20.6 5.3 41 112-152 18-58 (62)
102 1zhc_A Hypothetical protein HP 25.7 1.9E+02 0.0065 20.9 6.4 40 119-159 27-66 (76)
103 1kd8_A GABH AIV, GCN4 acid bas 25.5 1.1E+02 0.0039 20.3 4.3 33 118-150 3-35 (36)
104 3vp9_A General transcriptional 25.1 2.4E+02 0.0081 21.8 7.6 46 77-126 40-85 (92)
105 2l7b_A Apolipoprotein E, APO-E 24.8 3E+02 0.01 24.6 8.4 132 77-227 67-207 (307)
106 3q4f_C DNA repair protein XRCC 24.4 50 0.0017 28.7 3.1 33 212-244 150-184 (186)
107 2yy0_A C-MYC-binding protein; 24.3 1E+02 0.0034 21.3 4.1 36 133-168 15-50 (53)
108 4dzn_A Coiled-coil peptide CC- 24.2 66 0.0023 20.8 2.9 18 139-156 4-21 (33)
109 1deq_A Fibrinogen (alpha chain 24.2 4.7E+02 0.016 24.9 13.5 31 123-153 95-125 (390)
110 3viq_B Mating-type switching p 24.0 59 0.002 24.9 3.1 25 120-144 5-29 (85)
111 2j5u_A MREC protein; bacterial 23.9 33 0.0011 29.7 1.9 46 16-65 14-59 (255)
112 4emc_A Monopolin complex subun 23.7 2.6E+02 0.0089 24.2 7.4 47 114-160 18-64 (190)
113 1txp_A HnRNP C, heterogeneous 23.4 49 0.0017 21.0 2.1 24 142-165 4-27 (28)
114 3bas_A Myosin heavy chain, str 23.1 2.3E+02 0.0078 20.9 10.2 46 19-64 12-57 (89)
115 1hs7_A Syntaxin VAM3; UP-and-D 22.9 2.6E+02 0.0089 21.5 7.2 16 57-72 65-80 (97)
116 3a7o_A Autophagy protein 16; c 22.7 2.5E+02 0.0086 21.2 6.7 30 220-249 45-74 (75)
117 2dgc_A Protein (GCN4); basic d 22.4 1.5E+02 0.0051 20.9 4.8 36 112-147 26-61 (63)
118 3pdy_A Plectin; cytoskeleton, 22.2 3E+02 0.01 22.0 16.9 31 5-35 36-66 (210)
119 2dq3_A Seryl-tRNA synthetase; 21.8 1.3E+02 0.0043 27.9 5.4 31 12-42 28-58 (425)
120 3swf_A CGMP-gated cation chann 21.6 1.5E+02 0.0053 22.2 4.9 44 191-236 4-47 (74)
121 3bas_A Myosin heavy chain, str 21.6 2.5E+02 0.0084 20.7 10.2 70 84-161 18-87 (89)
122 4e29_A Chimeric WZZB chain len 21.5 2.7E+02 0.0093 24.4 7.3 54 135-188 111-165 (248)
123 3u06_A Protein claret segregat 21.1 1E+02 0.0035 28.6 4.7 13 170-182 49-61 (412)
124 3oja_A Leucine-rich immune mol 20.4 4.6E+02 0.016 23.4 14.4 27 221-247 442-468 (487)
125 1lwu_C Fibrinogen gamma chain; 20.1 2.5E+02 0.0086 25.6 7.0 20 133-152 36-55 (323)
126 2wq1_A General control protein 20.0 1.6E+02 0.0054 19.3 4.1 28 118-145 2-29 (33)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.02 E-value=0.081 Score=41.47 Aligned_cols=55 Identities=11% Similarity=0.082 Sum_probs=29.0
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHH
Q 025508 8 GMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERAR 62 (251)
Q Consensus 8 emesLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLr 62 (251)
.|.+|=..++.+.......-.++..++..+..-......+...+..+....+.+.
T Consensus 7 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (284)
T 1c1g_A 7 KMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYS 61 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555566666655555555555555555444444445555554444444433
No 2
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=96.96 E-value=0.0082 Score=47.52 Aligned_cols=85 Identities=21% Similarity=0.309 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHHhhh
Q 025508 14 SDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVN 93 (251)
Q Consensus 14 ~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~r~n 93 (251)
.+=.++.=+..++-..+.-+|.+|-.|...|..+|+.+..|+++.+. .+ ...++.-+++++|++||.=
T Consensus 34 ~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~------~~----l~r~dLE~~iesL~eEl~F-- 101 (119)
T 3ol1_A 34 NDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDN------AS----LARLDLERKVESLQEEIAF-- 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH----HHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccH------HH----HHHHHHHHHHHHHHHHHHH--
Confidence 33345555667777788889999999999999999999888887653 22 3345667888999888754
Q ss_pred hhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHH
Q 025508 94 DEHLSKEYELRKVIDSIKQDYAAKARDFEDQIR 126 (251)
Q Consensus 94 ~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~ 126 (251)
||.-|+..+.+|..||+
T Consensus 102 ----------------LKk~heeEl~eLq~qi~ 118 (119)
T 3ol1_A 102 ----------------LKKLHEEEIQELQAQIQ 118 (119)
T ss_dssp ----------------HHHHHHHHHHHHHSCC-
T ss_pred ----------------HHHHHHHHHHHHHHHhc
Confidence 67778888888877765
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.21 E-value=0.018 Score=59.27 Aligned_cols=6 Identities=33% Similarity=0.512 Sum_probs=0.0
Q ss_pred hhhhHH
Q 025508 175 IQDLKD 180 (251)
Q Consensus 175 IqdLkD 180 (251)
|.+|..
T Consensus 1041 l~ele~ 1046 (1184)
T 1i84_S 1041 ISELEV 1046 (1184)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 333333
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.15 E-value=0.022 Score=58.62 Aligned_cols=34 Identities=18% Similarity=0.148 Sum_probs=16.4
Q ss_pred HHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHH
Q 025508 29 EVQLLRSSCNAETKRREALEITCNTLKKENERAR 62 (251)
Q Consensus 29 Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLr 62 (251)
++..++.++..-...+..++..+..|..+.+.+.
T Consensus 865 eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~ 898 (1184)
T 1i84_S 865 ELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ 898 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444555555555555544444
No 5
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=96.13 E-value=0.19 Score=39.71 Aligned_cols=105 Identities=17% Similarity=0.279 Sum_probs=83.3
Q ss_pred HHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHH
Q 025508 107 IDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQ 186 (251)
Q Consensus 107 ie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~Eq 186 (251)
-..+..-|+..|++|-.+|.++-.+.|.=+.-|+.++..+...+.--+.-.+. +..| .++|..||-.+.-+-
T Consensus 11 ~~~~~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~----r~~~----E~di~~lrK~lD~~~ 82 (119)
T 3ol1_A 11 MSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQ----REEA----ENTLQSFRQDVDNAS 82 (119)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH----HHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH----HHHH----HHHHHHhhhcccHHH
Confidence 34566789999999999999999999999999999888888777655433222 2223 468899999888888
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhh
Q 025508 187 EEKNELNKRVQDLEKELLMNRTKMAEHNRDLTS 219 (251)
Q Consensus 187 EeKn~l~~kLq~~ekElli~ktK~~eqqrD~tS 219 (251)
=.|-+|..+++.+..|+.|.|.-..+-.+++-+
T Consensus 83 l~r~dLE~~iesL~eEl~FLKk~heeEl~eLq~ 115 (119)
T 3ol1_A 83 LARLDLERKVESLQEEIAFLKKLHEEEIQELQA 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999888877766543
No 6
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=95.33 E-value=0.76 Score=35.90 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=9.2
Q ss_pred HHHHHHHHhhhhhhHHHHhhh
Q 025508 224 ETLKLKIMKLRKENEILKRKL 244 (251)
Q Consensus 224 etLKqKiMKLRKENE~LKR~l 244 (251)
..+..++-+++-+-+.+..+|
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~L 281 (284)
T 1c1g_A 261 YAQKLKYKAISEELDHALNDM 281 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444443
No 7
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=94.46 E-value=0.43 Score=35.99 Aligned_cols=75 Identities=21% Similarity=0.299 Sum_probs=60.7
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHH
Q 025508 8 GMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKE 87 (251)
Q Consensus 8 emesLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkE 87 (251)
+++.+-.+=.++-=+-.++-..+.-+|.+|-.|...|+++|+.+..|+++-.-+ +...++--++..||++
T Consensus 8 qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a----------~l~r~dLE~kvesL~e 77 (86)
T 3swk_A 8 QVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNA----------SLARLDLERKVESLQE 77 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH----------HHHHHHHHHHHHHHHH
Confidence 345555566667777788888899999999999999999999999999997743 3445778889999999
Q ss_pred HHHhh
Q 025508 88 ELKRV 92 (251)
Q Consensus 88 EL~r~ 92 (251)
|+.=+
T Consensus 78 El~fL 82 (86)
T 3swk_A 78 EIAFL 82 (86)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98643
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.90 E-value=1.4 Score=40.42 Aligned_cols=87 Identities=15% Similarity=0.150 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhh---hHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHH
Q 025508 118 ARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLD---QVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNK 194 (251)
Q Consensus 118 i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~Le---qV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~ 194 (251)
++.++..|+.+.......++.+..++.++.+-...+......+. ++-.++..+-+..++.+...++-.+++-+...+
T Consensus 458 ~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (597)
T 3oja_B 458 VNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQK 537 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhc
Confidence 44555555555555555555555555554443333221111111 222222233333455555555555555555666
Q ss_pred HHHHHHHHHH
Q 025508 195 RVQDLEKELL 204 (251)
Q Consensus 195 kLq~~ekEll 204 (251)
.++.++++..
T Consensus 538 ~~~~~~~~~~ 547 (597)
T 3oja_B 538 ETEDLEQENI 547 (597)
T ss_dssp HHHHHHHHHH
T ss_pred chhhHHhhhH
Confidence 6666555533
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.20 E-value=8.9 Score=39.83 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 025508 20 YEDFKRAISEVQL 32 (251)
Q Consensus 20 ~e~fk~g~~Eiq~ 32 (251)
|...+.|+.-||+
T Consensus 835 y~~lr~aai~IQs 847 (1080)
T 2dfs_A 835 YQCMRDATIALQA 847 (1080)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344455555554
No 10
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=91.70 E-value=6.1 Score=41.04 Aligned_cols=57 Identities=11% Similarity=0.098 Sum_probs=38.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhh
Q 025508 112 QDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVE 168 (251)
Q Consensus 112 ~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve 168 (251)
..-+.++.+|+.++..+..++-.-|..+.++..+|...-+++...+.+|++-..+.+
T Consensus 987 ~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 987 LSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777777777666777777777777766677666666666666555
No 11
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=90.81 E-value=3.1 Score=32.71 Aligned_cols=56 Identities=16% Similarity=0.239 Sum_probs=14.0
Q ss_pred hhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHH
Q 025508 78 RKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISN 141 (251)
Q Consensus 78 ~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~q 141 (251)
|++|+..|.....+-++.+.+-..| |..+ ...|..|+..|.++..+.++=|++|..
T Consensus 13 y~~K~eel~~~~~~~~~~l~~~k~E----i~el----rr~iq~L~~el~~l~~~~~~LE~~l~e 68 (129)
T 3tnu_B 13 YQTKYEELQQTAGRHGDDLRNTKHE----ISEM----NRMIQRLRAEIDNVKKQCANLQNAIAD 68 (129)
T ss_dssp ---------------------CHHH----HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH----HHHH----HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 6677777777666655554432222 2212 223444455555544444444444433
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.73 E-value=9.9 Score=34.86 Aligned_cols=21 Identities=38% Similarity=0.327 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHhhhhHHHhh
Q 025508 194 KRVQDLEKELLMNRTKMAEHN 214 (251)
Q Consensus 194 ~kLq~~ekElli~ktK~~eqq 214 (251)
++...+++.+-..|-++.+-.
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~ 564 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELR 564 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhHHHHHH
Confidence 333333333333333333333
No 13
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=90.60 E-value=2.2 Score=33.66 Aligned_cols=20 Identities=15% Similarity=0.064 Sum_probs=0.0
Q ss_pred hhHhhhHHHHHHHhhhhhhh
Q 025508 78 RKAKCQSLKEELKRVNDEHL 97 (251)
Q Consensus 78 ~rtk~qsLkEEL~r~n~e~l 97 (251)
|++|+..|.....+-.+.+.
T Consensus 15 y~~K~eel~~~~~~~~~~l~ 34 (131)
T 3tnu_A 15 FFTKTEELNREVATNSELVQ 34 (131)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHhhHHHHH
Confidence 56666666666665544443
No 14
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=88.66 E-value=6.2 Score=29.60 Aligned_cols=83 Identities=18% Similarity=0.273 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHH
Q 025508 118 ARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQ 197 (251)
Q Consensus 118 i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq 197 (251)
|.+|-.||-++-.+.|.=+.-|+.++.++...|.--+.=.+. +.. -.++|..||-.+--.-=.|-+|..+++
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~----R~~----~E~d~~~LrkdvD~a~l~r~dLE~kve 73 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQ----REE----AENTLQSFRQDVDNASLARLDLERKVE 73 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH----HHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH----HHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 567888888888888877777766666655554433321111 112 235778888888888888999999999
Q ss_pred HHHHHHHHhhh
Q 025508 198 DLEKELLMNRT 208 (251)
Q Consensus 198 ~~ekElli~kt 208 (251)
++..|+-+.|.
T Consensus 74 sL~eEl~fLkk 84 (86)
T 3swk_A 74 SLQEEIAFLKK 84 (86)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhh
Confidence 99999988764
No 15
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=87.79 E-value=6.3 Score=30.91 Aligned_cols=97 Identities=16% Similarity=0.299 Sum_probs=37.9
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHH---HhhhhhHHHhhhhhhhhhhhhhHHHHH-HH---
Q 025508 113 DYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTL---AKKLDQVKFDVEMKYNLEIQDLKDCLL-LE--- 185 (251)
Q Consensus 113 ~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L---~~~LeqV~~eve~kY~~EIqdLkD~L~-~E--- 185 (251)
-|..++.+|...+..--....+.-.-|..|+.-+....+-|+.+ +..|+.--.+++..|..++.++...|. +|
T Consensus 12 ~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL 91 (129)
T 3tnu_B 12 WYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEAL 91 (129)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 45566666655443322222222222333333333333333322 334455556777888888777766553 23
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhhH
Q 025508 186 QEEKNELNKRVQDLEKELLMNRTKM 210 (251)
Q Consensus 186 qEeKn~l~~kLq~~ekElli~ktK~ 210 (251)
+.-|.++.+.++.-+ +|+=-|+.+
T Consensus 92 ~~~r~e~~~ql~EYq-~LlnvKl~L 115 (129)
T 3tnu_B 92 QKAKQDMARLLREYQ-ELMNTKLAL 115 (129)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 234556666665554 455555554
No 16
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=85.12 E-value=17 Score=30.90 Aligned_cols=45 Identities=29% Similarity=0.652 Sum_probs=33.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhh
Q 025508 13 LSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAKC 82 (251)
Q Consensus 13 L~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~ 82 (251)
-+.||++|++|...--|||. +|.|+| .|.|+..=|-+|+.-..+|
T Consensus 30 s~~yd~l~e~y~r~sqEiq~----------Kr~Aie---------------AF~E~ik~FeeQ~~~qer~ 74 (170)
T 3l4q_C 30 SREYDQLYEEYTRTSQELQM----------KRTAIE---------------AFNETIKIFEEQGQTQEKS 74 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------HHHHHH---------------HHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhhhHHHHH----------HHHHHH---------------HHHHHHHHHHHHHHHHHHH
Confidence 46789999999888878775 567776 3667777788888766665
No 17
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=84.65 E-value=18 Score=30.91 Aligned_cols=85 Identities=18% Similarity=0.182 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhh-hhhhhhhhhhhHHHHHHHHHHhHHHHHHH
Q 025508 118 ARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDV-EMKYNLEIQDLKDCLLLEQEEKNELNKRV 196 (251)
Q Consensus 118 i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~ev-e~kY~~EIqdLkD~L~~EqEeKn~l~~kL 196 (251)
+..+..++..+..+...-+.-|.++..++....+.|.-...+|+.|+..= -.-+..||..++.-+..=-++--++..++
T Consensus 41 ~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~i 120 (256)
T 3na7_A 41 KEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEI 120 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666777777777777777777777777765321 12344455555544444333333444444
Q ss_pred HHHHHH
Q 025508 197 QDLEKE 202 (251)
Q Consensus 197 q~~ekE 202 (251)
..++.+
T Consensus 121 e~~~~~ 126 (256)
T 3na7_A 121 KRKSEK 126 (256)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
No 18
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=84.60 E-value=6.5 Score=30.96 Aligned_cols=51 Identities=16% Similarity=0.345 Sum_probs=26.5
Q ss_pred hhhhHHHhhhhhhhhhhhhhHHHHH-HH---HHHhHHHHHHHHHHHHHHHHhhhhH
Q 025508 159 KLDQVKFDVEMKYNLEIQDLKDCLL-LE---QEEKNELNKRVQDLEKELLMNRTKM 210 (251)
Q Consensus 159 ~LeqV~~eve~kY~~EIqdLkD~L~-~E---qEeKn~l~~kLq~~ekElli~ktK~ 210 (251)
.|+.--.+++..|..++.++...|. +| +.-|.++.+.++.-+ +|+=-|+.+
T Consensus 63 sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq-~Ll~vKl~L 117 (131)
T 3tnu_A 63 SLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYK-ILLDVKTRL 117 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3444456667777777766655543 22 123455555555544 444444444
No 19
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=78.45 E-value=3.6 Score=28.96 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=23.9
Q ss_pred hhhhHHHhHHHHHHHhhhhHHhHHHHHHhH
Q 025508 36 SCNAETKRREALEITCNTLKKENERARNSY 65 (251)
Q Consensus 36 ~~~aE~k~ReALE~tc~~Lk~dneRLrkly 65 (251)
.+..=..+=..|+..|..+.++++||+++-
T Consensus 12 ~n~~L~~kv~~Le~~c~~~eQEieRL~~LL 41 (48)
T 3vmx_A 12 INIQLATKIQHLEFSCSEKEQEIERLNKLL 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 333335667789999999999999999975
No 20
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=78.29 E-value=32 Score=29.57 Aligned_cols=124 Identities=20% Similarity=0.206 Sum_probs=49.9
Q ss_pred hhHhhhHHHHHHH-------hhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Q 025508 78 RKAKCQSLKEELK-------RVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHK 150 (251)
Q Consensus 78 ~rtk~qsLkEEL~-------r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk 150 (251)
|......|..||. +.+..+.++=...+..++.+|.+|.....+...+|+.+..+.++--....+|+..|-...
T Consensus 36 FqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLE 115 (189)
T 2v71_A 36 FQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELE 115 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455544443 233333444444455555555555555555555555554444433333333333332222
Q ss_pred HHHHHHHhhhhh---HHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHH
Q 025508 151 MHMQTLAKKLDQ---VKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKE 202 (251)
Q Consensus 151 ~hid~L~~~Leq---V~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekE 202 (251)
--=|-|-...-. --.+++++|..-|.-. -.|..|.+||-.|.-.+|-+-.|
T Consensus 116 q~NDdlEr~~R~~~~SleD~e~kln~aiEr~-alLE~El~EKe~l~~~~QRLkdE 169 (189)
T 2v71_A 116 QANDDLERAKRATIMSLEDFEQRLNQAIERN-AFLESELDEKESLLVSVQRLKDE 169 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCC------
T ss_pred HHhhHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111110 1124555666555432 23444555555554444444444
No 21
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=77.74 E-value=10 Score=31.88 Aligned_cols=57 Identities=25% Similarity=0.400 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHH
Q 025508 138 TISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKE 202 (251)
Q Consensus 138 ~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekE 202 (251)
+|..|+.+++.+...| .+..-++.-|- .-|++|+|.+..=+-+-|-+..++..+++|
T Consensus 69 ~I~~L~~El~~l~~ki-------~dLeeel~eK~-K~~e~l~DEl~aLqlq~n~lE~kl~kLq~E 125 (152)
T 3a7p_A 69 TLAILQKELKSKEQEI-------RRLKEVIALKN-KNTERLNAALISGTIENNVLQQKLSDLKKE 125 (152)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444544444444444 44443443332 246778888877777888888888888775
No 22
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=76.97 E-value=32 Score=28.81 Aligned_cols=103 Identities=24% Similarity=0.260 Sum_probs=70.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHHhhh
Q 025508 14 SDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVN 93 (251)
Q Consensus 14 ~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~r~n 93 (251)
..++++..+.++.-.|+..|...+..|..+|...|..+..+.+|.|-| |=|||.=|+.|=.-.
T Consensus 44 ~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeL----TasLFeEAN~MVa~a------------- 106 (154)
T 2ocy_A 44 EDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL----TASLFDEANNMVADA------------- 106 (154)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH----HHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-------------
Confidence 345566667778888999999999999999999999999999999998 456666565553211
Q ss_pred hhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHH
Q 025508 94 DEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQ 154 (251)
Q Consensus 94 ~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid 154 (251)
+++ -..+|.++..+..+..-.+..|.-|...|++.|.-|.
T Consensus 107 ----------r~~-----------~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~ 146 (154)
T 2ocy_A 107 ----------RKE-----------KYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMH 146 (154)
T ss_dssp ----------HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ----------HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 2233444444444555556677777777776665443
No 23
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=76.45 E-value=23 Score=26.96 Aligned_cols=23 Identities=26% Similarity=0.179 Sum_probs=11.6
Q ss_pred HhhhHHHHHHHhhhhhhhhhHHH
Q 025508 80 AKCQSLKEELKRVNDEHLSKEYE 102 (251)
Q Consensus 80 tk~qsLkEEL~r~n~e~lskE~E 102 (251)
-|.++|+-|...+.++.-..|..
T Consensus 9 kKm~~lk~e~e~a~drae~~e~~ 31 (101)
T 3u1c_A 9 KKMQMLKLDKENALDRAEQAEAD 31 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555544444333
No 24
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=76.36 E-value=26 Score=27.50 Aligned_cols=66 Identities=24% Similarity=0.316 Sum_probs=57.5
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHh
Q 025508 7 DGMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQL 76 (251)
Q Consensus 7 EemesLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~ql 76 (251)
.+.++|=-.++++-..+++-=.|+..|+..+..|..+|...|.....+.++.|-|- =|||.=|+.|
T Consensus 5 ~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT----asLFeEAN~M 70 (97)
T 2eqb_B 5 SNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT----ASLFDEANNM 70 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 45778888899999999999999999999999999999999999999999999984 4566555555
No 25
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=75.58 E-value=19 Score=28.93 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=40.6
Q ss_pred HhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhH---HHHHHHhhhhhH
Q 025508 116 AKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKM---HMQTLAKKLDQV 163 (251)
Q Consensus 116 ~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~---hid~L~~~LeqV 163 (251)
+.|++|-.++.++....+....-|+.|+.+++++.. -|++|..-.+=-
T Consensus 24 ~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY 74 (110)
T 2v4h_A 24 MQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIY 74 (110)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999888 666766554433
No 26
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=74.86 E-value=17 Score=29.97 Aligned_cols=65 Identities=26% Similarity=0.325 Sum_probs=53.9
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHh
Q 025508 8 GMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQL 76 (251)
Q Consensus 8 emesLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~ql 76 (251)
+.+.+=..++++-.++++--.|+..|+..+..|..+|...|.....+.++.|-|- =+||.=||.|
T Consensus 26 ~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LT----asLFeEAN~M 90 (135)
T 2e7s_A 26 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT----ASLFDEANNL 90 (135)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 4555556778888888888999999999999999999999999999999999984 4566555554
No 27
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=74.73 E-value=24 Score=26.85 Aligned_cols=63 Identities=21% Similarity=0.387 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh-------hhhhHHHhHHHHHHHhhhhHHhHHHHH---HhHHHHHHHHHHHh
Q 025508 14 SDFDQIYEDFKRAISEVQLLRS-------SCNAETKRREALEITCNTLKKENERAR---NSYTESLENLADQL 76 (251)
Q Consensus 14 ~~Fd~i~e~fk~g~~Eiq~Lrs-------~~~aE~k~ReALE~tc~~Lk~dneRLr---klytEsL~~~a~ql 76 (251)
.-|+++......|+--|+.|+- .-++=....+.+.+....|..+|++|+ ..+.+.|..+.+++
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4589999999999996666554 333322223333333334555666654 23445555555444
No 28
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=73.94 E-value=27 Score=26.47 Aligned_cols=46 Identities=17% Similarity=0.260 Sum_probs=37.0
Q ss_pred HHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q 025508 164 KFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTK 209 (251)
Q Consensus 164 ~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekElli~ktK 209 (251)
...+...|..+|.+|+..|.--.-+|..+.-.+.+++.++.-.|.|
T Consensus 47 ~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 47 KSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456778999999999999888888888888888888776655554
No 29
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=71.61 E-value=30 Score=27.12 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=39.1
Q ss_pred HhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhh---HHHHHHHhhhhhH
Q 025508 116 AKARDFEDQIRSLMLEKATNEATISNLHQDLAAHK---MHMQTLAKKLDQV 163 (251)
Q Consensus 116 ~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk---~hid~L~~~LeqV 163 (251)
+.+.+|-.++.++..-.+.....|+.|+..++.|+ ..|++|..-.+=-
T Consensus 2 ~~~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY 52 (94)
T 3jsv_C 2 MQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIY 52 (94)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999 5666666554433
No 30
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=71.32 E-value=17 Score=27.55 Aligned_cols=59 Identities=24% Similarity=0.363 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHH
Q 025508 136 EATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKE 202 (251)
Q Consensus 136 Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekE 202 (251)
..+|.-|+.+|..+.-.|-.|...+---..+ ..-|.|.|.-=-=|.|-|+.||++++.|
T Consensus 17 ~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd--------~ErLNDEiislNIENNlL~~rl~~l~~E 75 (75)
T 3a7o_A 17 LNTLAILQKELKSKEQEIRRLKEVIALKNKN--------TERLNDELISGTIENNVLQQKLSDLKKE 75 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------HHHhhHHHHHhHHHHHHHHHHHHHHhcC
Confidence 3488889999988888887776655433333 4568888888888999999999998865
No 31
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=70.44 E-value=25 Score=31.66 Aligned_cols=110 Identities=15% Similarity=0.133 Sum_probs=60.1
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhh
Q 025508 95 EHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLE 174 (251)
Q Consensus 95 e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~E 174 (251)
.+..++.+....++.++..+...-..+...+....+|.++.+..-...-........+|++=..+.-.+.......++.+
T Consensus 364 ~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (487)
T 3oja_A 364 TLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHK 443 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhH
Confidence 44455556666666666666655555555555555555555544444333333334444433333333333444566777
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHH
Q 025508 175 IQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMA 211 (251)
Q Consensus 175 IqdLkD~L~~EqEeKn~l~~kLq~~ekElli~ktK~~ 211 (251)
|+.|+ ++++.+.+-++++.+.+..-+.++.
T Consensus 444 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
T 3oja_A 444 ETQLA-------EENARLKKLNGEADLALASANATLQ 473 (487)
T ss_dssp HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-------HHhhhhhhhhhhhhhhhHhcccHHH
Confidence 77665 4677777777777776655555543
No 32
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=70.31 E-value=9.3 Score=28.37 Aligned_cols=52 Identities=15% Similarity=0.250 Sum_probs=38.6
Q ss_pred HhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhh
Q 025508 116 AKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDV 167 (251)
Q Consensus 116 ~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~ev 167 (251)
++...||++|-.+....|--|.+|.+|..-+++.-.-|+.|...+..+...+
T Consensus 7 ~~~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 7 PRDQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788888888888888888888888888777777777776665544
No 33
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=69.93 E-value=51 Score=28.07 Aligned_cols=53 Identities=9% Similarity=0.150 Sum_probs=38.6
Q ss_pred HhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhh
Q 025508 116 AKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVE 168 (251)
Q Consensus 116 ~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve 168 (251)
..++.||..|..++.+....++.+..+...+++.+.++..+...++....+..
T Consensus 104 ~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~ 156 (256)
T 3na7_A 104 ERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIK 156 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888887777777777777777777777777666666554443
No 34
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=68.11 E-value=52 Score=27.48 Aligned_cols=123 Identities=13% Similarity=0.204 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHH---HHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHH
Q 025508 121 FEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQT---LAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQ 197 (251)
Q Consensus 121 LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~---L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq 197 (251)
|-.|+-.++--+++-|-...+++++|...++.|.. +..++++...+. ..+..++..|.+.|.-|+.-+-.......
T Consensus 4 LStKLI~Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~l~~~~-~~~~~e~~~L~~~l~~E~~~R~~aE~~~~ 82 (154)
T 2ocy_A 4 LSTQLIESVDKQSHLEEQLNKSLKTIASQKAAIENYNQLKEDYNTLKREL-SDRDDEVKRLREDIAKENELRTKAEEEAD 82 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTHH-HHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555556555544444433 222333322222 24677888999999999888888888888
Q ss_pred HHHHHHHHhhhhHHHhhhhhhhhhhHH--HHHHHHHhhhhhhHHHHhhh
Q 025508 198 DLEKELLMNRTKMAEHNRDLTSVRSVE--TLKLKIMKLRKENEILKRKL 244 (251)
Q Consensus 198 ~~ekElli~ktK~~eqqrD~tS~~hVe--tLKqKiMKLRKENE~LKR~l 244 (251)
.+++|+==.=+.+-++--.+++.--.+ .+..|..+|++....-..+|
T Consensus 83 ~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l 131 (154)
T 2ocy_A 83 KLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLL 131 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887555555555555555543332 35555555555544433333
No 35
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=67.88 E-value=50 Score=28.04 Aligned_cols=36 Identities=14% Similarity=0.353 Sum_probs=18.6
Q ss_pred HHHhhhhhhhhhhHHHHHHHHHhhhhhhHHHHhhhh
Q 025508 210 MAEHNRDLTSVRSVETLKLKIMKLRKENEILKRKLN 245 (251)
Q Consensus 210 ~~eqqrD~tS~~hVetLKqKiMKLRKENE~LKR~l~ 245 (251)
++++--+-.|..-|+++-++.+..|+.--.-|-|..
T Consensus 147 l~~~F~~~~~e~dv~~Fl~~y~~~R~~yH~RreK~~ 182 (192)
T 2p22_C 147 LETTTRSIDSADDLDQFIKNYLDIRTQYHLRREKLA 182 (192)
T ss_dssp HHHSCSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333433455666666666666666544444443
No 36
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=67.08 E-value=90 Score=31.06 Aligned_cols=37 Identities=16% Similarity=0.140 Sum_probs=16.3
Q ss_pred hhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHHhhh
Q 025508 51 CNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVN 93 (251)
Q Consensus 51 c~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~r~n 93 (251)
|+.|+...+.+.+.|.++-.- |+.++..|++.+..++
T Consensus 66 INELKnqLEdlsKnsKdseqy------~k~~~E~Lr~rq~q~~ 102 (562)
T 3ghg_A 66 INKLKNSLFEYQKNNKDSHSL------TTNIMEILRGDFSSAN 102 (562)
T ss_dssp HHHHHHHHTHHHHHHHHHHHH------HHHHHHTTSSHHHHHH
T ss_pred HHHHHHHHHHHHhhchhHHHH------HHHHHHHHHHHHHhhh
Confidence 444444444444444444332 3444444444444444
No 37
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=66.08 E-value=2.1e+02 Score=33.72 Aligned_cols=31 Identities=13% Similarity=0.034 Sum_probs=12.5
Q ss_pred HHHHhhhhhHHHhHHHHHHHhhhhHHhHHHH
Q 025508 31 QLLRSSCNAETKRREALEITCNTLKKENERA 61 (251)
Q Consensus 31 q~Lrs~~~aE~k~ReALE~tc~~Lk~dneRL 61 (251)
+.-+..+.....|=.-....++.|+.+.+.+
T Consensus 1916 ~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~ 1946 (3245)
T 3vkg_A 1916 EEEQLHLNIGLKKLRDTEAQVKDLQVSLAQK 1946 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444333334444444443333
No 38
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=65.53 E-value=63 Score=27.45 Aligned_cols=59 Identities=27% Similarity=0.318 Sum_probs=37.4
Q ss_pred hHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhH--------HHHHHHHHHHHHhh
Q 025508 79 KAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNE--------ATISNLHQDLAAHK 150 (251)
Q Consensus 79 rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~E--------a~I~qL~~dLaahk 150 (251)
-.+.++|.+||+++....-..+.+-+. |-.+|+.+..++|.-| +.=..+.++.++|+
T Consensus 96 q~ri~~L~~El~~~k~~~~k~~~e~r~---------------L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~eqE~~~H~ 160 (168)
T 3o0z_A 96 QARITSLQEEVKHLKHNLEKVEGERKE---------------AQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQEVNEHK 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 347788888888887776655555433 4444555555555555 45567888888888
Q ss_pred HH
Q 025508 151 MH 152 (251)
Q Consensus 151 ~h 152 (251)
.-
T Consensus 161 ~T 162 (168)
T 3o0z_A 161 VT 162 (168)
T ss_dssp C-
T ss_pred HH
Confidence 53
No 39
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=64.03 E-value=22 Score=27.05 Aligned_cols=53 Identities=13% Similarity=0.315 Sum_probs=36.8
Q ss_pred HHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhH
Q 025508 107 IDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQV 163 (251)
Q Consensus 107 ie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV 163 (251)
|+-||+++. .|..+...+--..+.-+.-+.||+++.++-.++++.|-.++|.|
T Consensus 29 ieELKekN~----~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e~v 81 (81)
T 2jee_A 29 IEELKEKNN----SLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRMEEV 81 (81)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHH----HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 344444433 34444445555556677889999999999999999998888765
No 40
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=62.49 E-value=1.1e+02 Score=29.67 Aligned_cols=87 Identities=22% Similarity=0.373 Sum_probs=60.8
Q ss_pred hHHHhHHHHHHHhhhhH---HhHHHH----HHhHHHHHHHHHHHhhhhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHh
Q 025508 39 AETKRREALEITCNTLK---KENERA----RNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIK 111 (251)
Q Consensus 39 aE~k~ReALE~tc~~Lk---~dneRL----rklytEsL~~~a~qle~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk 111 (251)
+|..++||+|-...-|. ++++.. .|+|.|.+.++...|+..-+ .+-+|.+++-+.-+ +-.-..|+
T Consensus 491 ~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~~--~~~~e~~~~~~~~~------~~~~~~~~ 562 (592)
T 1f5n_A 491 VERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRV--QLLKEQERTLALKL------QEQEQLLK 562 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH------HHHHHHHH
Confidence 45778888887766665 333433 46788888888888887665 45566666644332 22236788
Q ss_pred HHHHHhHHHHHHHHHHHHHHhh
Q 025508 112 QDYAAKARDFEDQIRSLMLEKA 133 (251)
Q Consensus 112 ~~~~~~i~~LE~qi~~~~~q~a 133 (251)
+.|..++..|.++|..+..+.+
T Consensus 563 ~g~~~~~~~~~~ei~~l~~~~~ 584 (592)
T 1f5n_A 563 EGFQKESRIMKNEIQDLQTKMR 584 (592)
T ss_dssp HTCHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999988754
No 41
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=62.26 E-value=30 Score=25.59 Aligned_cols=52 Identities=12% Similarity=0.116 Sum_probs=39.4
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHH
Q 025508 114 YAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKF 165 (251)
Q Consensus 114 ~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~ 165 (251)
.+..|.+||-+|.....-...=-.+|.+-.++|.....++..|..|+..+..
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4567888888888777666666678888899999999999999999987764
No 42
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=61.06 E-value=6.4 Score=31.01 Aligned_cols=30 Identities=30% Similarity=0.365 Sum_probs=26.3
Q ss_pred hhhhhhHHHHHHHHHhhhhhhHHHHhhhhh
Q 025508 217 LTSVRSVETLKLKIMKLRKENEILKRKLNS 246 (251)
Q Consensus 217 ~tS~~hVetLKqKiMKLRKENE~LKR~l~~ 246 (251)
..|+..|..|+.+|-.|+.||+.|+++...
T Consensus 8 ~~~~e~~~~lr~ei~~Le~E~~rLr~~~~~ 37 (100)
T 1go4_E 8 LFSREEADTLRLKVEELEGERSRLEEEKRM 37 (100)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347889999999999999999999998864
No 43
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=59.73 E-value=52 Score=25.21 Aligned_cols=61 Identities=25% Similarity=0.339 Sum_probs=46.8
Q ss_pred HhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 025508 80 AKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAA 148 (251)
Q Consensus 80 tk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaa 148 (251)
.+...|-.|++-+.-++-.||.| +--|+-+.-.=-+.|+.+.-+.+..+|-|..|+..|.+
T Consensus 19 ~~~E~L~qEi~~Lr~kv~elEnE--------rlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~~ 79 (81)
T 3qh9_A 19 RKAEELLQELRHLKIKVEELENE--------RNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLSR 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 34557889999888888888776 33455555555588999999999999999999988753
No 44
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=57.81 E-value=1.2e+02 Score=30.21 Aligned_cols=25 Identities=12% Similarity=0.182 Sum_probs=11.2
Q ss_pred HHHHHHHhhhhHHhHHHHHHhHHHH
Q 025508 44 REALEITCNTLKKENERARNSYTES 68 (251)
Q Consensus 44 ReALE~tc~~Lk~dneRLrklytEs 68 (251)
.-.|-.+-.+++.-.+.||..|.+.
T Consensus 52 QglLdkqErDltkrINELKnqLEdl 76 (562)
T 3ghg_A 52 KGLIDEVNQDFTNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred hhhHHhhcCcHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 45
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=57.75 E-value=55 Score=24.20 Aligned_cols=36 Identities=25% Similarity=0.469 Sum_probs=18.0
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHH
Q 025508 167 VEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKE 202 (251)
Q Consensus 167 ve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekE 202 (251)
+-..|..+|.++..-+..=.++-..+.+.++.++.+
T Consensus 65 ~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~ 100 (112)
T 1l8d_A 65 LLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDME 100 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666554444444444444444444444
No 46
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=57.05 E-value=35 Score=25.44 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=46.3
Q ss_pred HHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHH
Q 025508 49 ITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYA 115 (251)
Q Consensus 49 ~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~ 115 (251)
..+..+.....+|.+++..+|.... .-.+++.+|+...+++..+=..-++.|+.|+....
T Consensus 19 ~~i~~i~~~v~~l~~~~~~~L~~~~-------~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~ 78 (127)
T 1ez3_A 19 GFIDKIAENVEEVKRKHSAILASPN-------PDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIE 78 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSS-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888999999999986422 13368889998888888888888888888876543
No 47
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=56.68 E-value=1.2e+02 Score=27.88 Aligned_cols=48 Identities=23% Similarity=0.584 Sum_probs=38.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhh
Q 025508 11 SLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAKCQ 83 (251)
Q Consensus 11 sLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~q 83 (251)
-.-..||++|++|...-.||| -+|.|+| .|.|+..-|-+|+.-..+|+
T Consensus 137 ~~~~~~~~~~~~~~~~~~e~~----------~k~~a~~---------------af~~~~~~f~~q~~~~e~~~ 184 (373)
T 3hhm_B 137 EKSREYDRLYEEYTRTSQEIQ----------MKRTAIE---------------AFNETIKIFEEQCQTQERYS 184 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----------HHHHHHH---------------HHHHHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHhccchHHHH----------HHHHHHH---------------HHHHHHHHHHHHHHHHHHHh
Confidence 356789999999999999999 5788888 67777777777776666664
No 48
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=56.19 E-value=1.4e+02 Score=28.60 Aligned_cols=63 Identities=14% Similarity=0.306 Sum_probs=38.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 025508 125 IRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELL 204 (251)
Q Consensus 125 i~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekEll 204 (251)
+.....+.-.++.+|++....|..+...|+.. |......-|+.|+..+ +.+..|+++++..+.
T Consensus 130 lk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~----------~~~~~~~~i~~L~~~~-------~~l~~ki~~l~~~~~ 192 (464)
T 1m1j_B 130 LVKTQKQRKDNDIILSEYNTEMELHYNYIKDN----------LDNNIPSSLRVLRAVI-------DSLHKKIQKLENAIA 192 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHTHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred hhcccccccchhhHHHHHHHHHHHHHHHHHHH----------HhccchhHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 33333344445566777776777666666522 3344555666776655 467888888888754
No 49
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=56.01 E-value=75 Score=25.25 Aligned_cols=95 Identities=16% Similarity=0.146 Sum_probs=47.4
Q ss_pred hhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHH---HHHhhhhhH------
Q 025508 93 NDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQ---TLAKKLDQV------ 163 (251)
Q Consensus 93 n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid---~L~~~LeqV------ 163 (251)
+..+.++-.-.+.+++.+|.+|...-.+-.+.++.+..+..+ |+..-...+.+|. .-++-|++-
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~-------lr~~~~~l~~~iReLEq~NDDLER~~R~t~~ 77 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQ-------TRAIKEQLHKYVRELEQANDDLERAKRATIV 77 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhchHHHHHHHHHHh
Confidence 444555555556666777777766655555555555544333 2222222222221 112222221
Q ss_pred -HHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHH
Q 025508 164 -KFDVEMKYNLEIQDLKDCLLLEQEEKNELNKR 195 (251)
Q Consensus 164 -~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~k 195 (251)
-.+++++|+.-|.- .-.|-.|-.||-.|.-.
T Consensus 78 SLeD~E~k~n~aiEr-nalLE~El~EKe~L~~~ 109 (111)
T 2v66_B 78 SLEDFEQRLNQAIER-NAFLESELDEKESLLVS 109 (111)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 24678888877763 34455566666665443
No 50
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=55.44 E-value=1.1e+02 Score=27.07 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=35.0
Q ss_pred hhhHHHhHH-HHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHH
Q 025508 37 CNAETKRRE-ALEITCNTLKKENERARNSYTESLENLADQLERKAKCQSLK 86 (251)
Q Consensus 37 ~~aE~k~Re-ALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLk 86 (251)
..=|..-=| +|+..|..|..+-..+.......|..+...+.. .+.+.|.
T Consensus 121 lPFEfraLEa~L~~v~~~Le~e~~~l~~~~~~~L~~L~~~i~~-~~L~~Ll 170 (261)
T 3rkg_A 121 QFYEHRALESIFINVMSALETDFKLHSQICIQILNDLENEVNR-LKLRHLL 170 (261)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCH-HHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-HHHHHHH
Confidence 344555444 578999999999999998888888888877643 4444444
No 51
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=54.87 E-value=83 Score=25.43 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhHHHHHhHHHHHHHH
Q 025508 101 YELRKVIDSIKQDYAAKARDFEDQI 125 (251)
Q Consensus 101 ~Eh~raie~Lk~~~~~~i~~LE~qi 125 (251)
-|..++++.++++|++++.++|.-.
T Consensus 64 se~e~E~ae~k~KYD~~lqe~ese~ 88 (115)
T 3vem_A 64 AELERKMAEVQAEFRRKFHEVEAEH 88 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466779999999999999888643
No 52
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=54.71 E-value=46 Score=27.38 Aligned_cols=106 Identities=20% Similarity=0.305 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 025508 119 RDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQD 198 (251)
Q Consensus 119 ~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~ 198 (251)
..||.+++.+-...++..+.|.++.. .+.+.+.|.+.|. ....++..|...|.-|+.-+-..-.....
T Consensus 4 s~LEd~L~~~r~~l~~~~~~~~~le~----l~~~l~~l~~~l~--------~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ 71 (135)
T 2e7s_A 4 GSLEEQLNKSLKTIASQKAAIENYNQ----LKEDYNTLKRELS--------DRDDEVKRLREDIAKENELRTKAEEEADK 71 (135)
T ss_dssp --CCSTTTHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHTT--------THHHHHHTHHHHHHHTTSHHHHHHHTTHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777777777777766654 3445666666553 44556778888888887776666666666
Q ss_pred HHHHHHHhhhhHHHhhhhhhhhhhHH--HHHHHHHhhhhh
Q 025508 199 LEKELLMNRTKMAEHNRDLTSVRSVE--TLKLKIMKLRKE 236 (251)
Q Consensus 199 ~ekElli~ktK~~eqqrD~tS~~hVe--tLKqKiMKLRKE 236 (251)
+++|+==.=+.+-++--.++++--.+ .+..|..+|+..
T Consensus 72 ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~q 111 (135)
T 2e7s_A 72 LNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQ 111 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666544455555555555554333 244444444433
No 53
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=54.13 E-value=95 Score=25.84 Aligned_cols=87 Identities=18% Similarity=0.312 Sum_probs=44.7
Q ss_pred HHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhhhhH
Q 025508 144 QDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSV 223 (251)
Q Consensus 144 ~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekElli~ktK~~eqqrD~tS~~hV 223 (251)
..+....+.|+.|..+|.=.+.++..+...++++|+..|.-+-| ++..+|.-.-.|| |.++ .+||
T Consensus 66 e~~~~l~~~~~~l~~qL~P~~~e~~~~l~~~~e~lr~~l~kdlE---elr~kL~P~~eEL---~~~l---------~~~~ 130 (191)
T 1nfn_A 66 ETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARLGADME---DVCGRLVQYRGEV---QAML---------GQST 130 (191)
T ss_dssp HHHHHHHHHHHHHTTC----------CHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH---HHTT---------TCCC
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHH---HHHH---------HHHH
Confidence 33444456688888889989888999999999999988843332 3445554444443 1111 2455
Q ss_pred HHHHHHHH--------hhhhhhHHHHhhhh
Q 025508 224 ETLKLKIM--------KLRKENEILKRKLN 245 (251)
Q Consensus 224 etLKqKiM--------KLRKENE~LKR~l~ 245 (251)
+.++++++ +++..-+.|++++.
T Consensus 131 Eelr~~L~Py~eelr~kl~~~~eeLr~~l~ 160 (191)
T 1nfn_A 131 EELRVRLASHLRKLRKRLLRDADDLQKRLA 160 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHhH
Confidence 66665554 34445556666554
No 54
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=54.05 E-value=46 Score=24.87 Aligned_cols=46 Identities=24% Similarity=0.343 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhH
Q 025508 118 ARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQV 163 (251)
Q Consensus 118 i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV 163 (251)
+.+|+.-+....-+....|+.|..|...|..-.+.|+-|.+.||..
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555566666666666666666666666666666543
No 55
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=53.07 E-value=98 Score=25.73 Aligned_cols=78 Identities=17% Similarity=0.235 Sum_probs=41.3
Q ss_pred hHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHH-HHHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhhhhHHHHHH
Q 025508 150 KMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLE-QEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKL 228 (251)
Q Consensus 150 k~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~E-qEeKn~l~~kLq~~ekElli~ktK~~eqqrD~tS~~hVetLKq 228 (251)
..+|+.|..+|.....++..+-.--+.++|.-|.-= .+=+..++.+++.+..-+. -+++-.++-. .+||+.|+.
T Consensus 105 ~kdlEelr~kL~P~~eEL~~~l~~~~Eelr~~L~Py~eelr~kl~~~~eeLr~~l~----P~~eelk~~l-~~~veel~~ 179 (191)
T 1nfn_A 105 GADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLA----VYQAGAREGA-ERGLSAIRE 179 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHTC----------------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHH-HHHHHHHHH
Confidence 557888999999999999999999999999888532 2344555666665554432 1222222222 267888887
Q ss_pred HHHh
Q 025508 229 KIMK 232 (251)
Q Consensus 229 KiMK 232 (251)
+++-
T Consensus 180 ~L~P 183 (191)
T 1nfn_A 180 RLGP 183 (191)
T ss_dssp ----
T ss_pred HhHh
Confidence 7764
No 56
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=52.43 E-value=11 Score=27.36 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=21.1
Q ss_pred hHHHHHHHhhhhHHhHHHHHHhHHH
Q 025508 43 RREALEITCNTLKKENERARNSYTE 67 (251)
Q Consensus 43 ~ReALE~tc~~Lk~dneRLrklytE 67 (251)
+=+-||..|..-.+|++||.+|..+
T Consensus 26 kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 26 KIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466899999999999999998643
No 57
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=51.77 E-value=40 Score=26.82 Aligned_cols=57 Identities=18% Similarity=0.200 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHhhhhhhhhhhHHHHHHHHHhhhhhhHHHHhhhhhcc
Q 025508 190 NELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIMKLRKENEILKRKLNSSS 248 (251)
Q Consensus 190 n~l~~kLq~~ekElli~ktK~~eqqrD~tS~~hVetLKqKiMKLRKENE~LKR~l~~s~ 248 (251)
.+|..+...+..|.==-|+|+...+.+.. ..+.+|..-|-+||..|+.++.++-..+
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~~~e~~--~~~~~Lq~El~~lr~~~~~l~~~iReLE 62 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQYAQSY--KQVSVLEDDLSQTRAIKEQLHKYVRELE 62 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777777777777888887776644 4566788888888888888887776544
No 58
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=51.56 E-value=77 Score=24.02 Aligned_cols=14 Identities=43% Similarity=0.605 Sum_probs=9.2
Q ss_pred HhHHHHHHHHHHHH
Q 025508 188 EKNELNKRVQDLEK 201 (251)
Q Consensus 188 eKn~l~~kLq~~ek 201 (251)
+--.|+|++|-+|.
T Consensus 87 ev~~L~RriqllEE 100 (101)
T 3u1c_A 87 EVASLNRRIQLVEE 100 (101)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcc
Confidence 44567777777663
No 59
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=50.94 E-value=87 Score=24.50 Aligned_cols=71 Identities=14% Similarity=0.209 Sum_probs=46.1
Q ss_pred hhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhhhhHHHHHHHHHhhhhhhHHHHhhhhh
Q 025508 171 YNLEIQDLKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIMKLRKENEILKRKLNS 246 (251)
Q Consensus 171 Y~~EIqdLkD~L~~EqEeKn~l~~kLq~~ekElli~ktK~~eqqrD~tS~~hVetLKqKiMKLRKENE~LKR~l~~ 246 (251)
+..++..|.+.|.-|+..+-..-.....+++||==.=+.+-++--.|++.- +..-..+-+.|+.|+.+|.+
T Consensus 24 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~a-----r~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 24 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADA-----RKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhh
Confidence 556677788888888777777777777777776555555555555555544 33344566667777777654
No 60
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=50.93 E-value=13 Score=25.86 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=15.5
Q ss_pred HHHHHHHHHhhhhhhHHHHhhhhh
Q 025508 223 VETLKLKIMKLRKENEILKRKLNS 246 (251)
Q Consensus 223 VetLKqKiMKLRKENE~LKR~l~~ 246 (251)
+..||+|+-.|.++++.|+++|..
T Consensus 28 ~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 28 LAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445666666666666777777653
No 61
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=50.48 E-value=77 Score=23.76 Aligned_cols=24 Identities=29% Similarity=0.219 Sum_probs=13.6
Q ss_pred hHhhhHHHHHHHhhhhhhhhhHHH
Q 025508 79 KAKCQSLKEELKRVNDEHLSKEYE 102 (251)
Q Consensus 79 rtk~qsLkEEL~r~n~e~lskE~E 102 (251)
+-|.++|+.|...+.++.-..|..
T Consensus 8 KkKm~~lk~e~e~a~d~ae~~e~~ 31 (101)
T 3u59_A 8 KKKMQMLKLDKENAIDRAEQAEAD 31 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666665555555444
No 62
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=49.89 E-value=1.1e+02 Score=25.38 Aligned_cols=104 Identities=17% Similarity=0.261 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhh------hhhh
Q 025508 99 KEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVE------MKYN 172 (251)
Q Consensus 99 kE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve------~kY~ 172 (251)
.|.+..|+-+-+. ..+.+|..||..++..--..-+-|+.-.+--+--......|-.|..+|......++ .+.+
T Consensus 26 ~E~dLEraEERae-~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLE 104 (155)
T 2efr_A 26 LKKLLERAEERAE-LSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLE 104 (155)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555443 34556666665555443333333333333333333445555555555555444333 2566
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 025508 173 LEIQDLKDCLLLEQEEKNELNKRVQDLEKEL 203 (251)
Q Consensus 173 ~EIqdLkD~L~~EqEeKn~l~~kLq~~ekEl 203 (251)
-+|.+|-|-|..+.+....++..|...-.+|
T Consensus 105 k~id~lEd~L~~~Kek~~~i~~eLd~tl~el 135 (155)
T 2efr_A 105 KSIDDLEDELYAQKLKYKAISEEMKQLEDKV 135 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777666766666555554
No 63
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=44.86 E-value=1.7e+02 Score=26.18 Aligned_cols=46 Identities=30% Similarity=0.678 Sum_probs=35.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhh
Q 025508 13 LSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLENLADQLERKAKCQ 83 (251)
Q Consensus 13 L~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~q 83 (251)
.+.||+||++|..--.||| .||.|++. |.|+..=|-+|++-..+|+
T Consensus 31 ~~~~~~~~~~~~~~~~~~~----------~k~~a~~a---------------f~~~~~~f~~q~~~qe~~~ 76 (302)
T 2y3a_B 31 SREYDQLYEEYTRTSQELQ----------MKRTAIEA---------------FNETIKIFEEQGQTQEKCS 76 (302)
T ss_dssp HTTTHHHHHHHHHHHHHHH----------HHHHHHHH---------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHH---------------HHHHHHHHHHHHHHHHHhh
Confidence 4678999999999888888 57788764 5666667777777766654
No 64
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=43.78 E-value=39 Score=22.52 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Q 025508 117 KARDFEDQIRSLMLEKATNEATISNLHQDLAAHK 150 (251)
Q Consensus 117 ~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk 150 (251)
+.+.||+++..++..+..=+.-+.+|+.=++.+|
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~~~ 35 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKNAECK 35 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence 4578999999999999998999999998887766
No 65
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=43.04 E-value=1.1e+02 Score=25.00 Aligned_cols=47 Identities=17% Similarity=0.221 Sum_probs=35.0
Q ss_pred HHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHH
Q 025508 142 LHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEE 188 (251)
Q Consensus 142 L~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEe 188 (251)
|..-+....++++.|..+|.=++.++..+...+++.|+..|...-|+
T Consensus 64 l~~~ld~l~~~~~~l~~~L~P~t~el~~~l~~~~e~Lr~~L~~d~Ee 110 (165)
T 1gs9_A 64 MDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARLGADMED 110 (165)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455556777777777788888889999999999988877664
No 66
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=42.61 E-value=66 Score=24.62 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=13.3
Q ss_pred hHHHHHHHhhhhhhhhhHHHHH
Q 025508 83 QSLKEELKRVNDEHLSKEYELR 104 (251)
Q Consensus 83 qsLkEEL~r~n~e~lskE~Eh~ 104 (251)
|++-+||.++.+.+.+.+...+
T Consensus 27 Q~i~EELs~vr~~ni~~eskL~ 48 (81)
T 1wt6_A 27 QSLSREMEAIRTDNQNFASQLR 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666665443
No 67
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=41.94 E-value=1.2e+02 Score=23.58 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHH
Q 025508 18 QIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERAR 62 (251)
Q Consensus 18 ~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLr 62 (251)
+.-++++.---++..|+.++..+.+.|.-|+..+..|-.+...|.
T Consensus 10 ~~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~ 54 (129)
T 2fxo_A 10 EREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQ 54 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444677777888999999999999999999999988888876654
No 68
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=41.33 E-value=1.6e+02 Score=24.73 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=49.2
Q ss_pred HHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHh
Q 025508 104 RKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFD 166 (251)
Q Consensus 104 ~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~e 166 (251)
..+|..|+ ..+..|+.+|+.+-.....+...+.-|+.++.++..+..++..++..+..+
T Consensus 67 ~~~I~~L~----~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~E 125 (152)
T 3a7p_A 67 LNTLAILQ----KELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKE 125 (152)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666665 456778889999998999999999999999999999999999998877664
No 69
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=41.27 E-value=2.1e+02 Score=26.18 Aligned_cols=43 Identities=12% Similarity=0.296 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHH
Q 025508 14 SDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKK 56 (251)
Q Consensus 14 ~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~ 56 (251)
..|...|..|+..+.+...+......-....+.++..+..+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~ql~ei~~ 221 (517)
T 4ad8_A 179 QAYAAAHAAWREAVSRLERLQASQRERARQIDLLAFQVQEISE 221 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 3455666667666666666555443333344555555555444
No 70
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=41.25 E-value=2.7e+02 Score=27.33 Aligned_cols=78 Identities=19% Similarity=0.193 Sum_probs=56.1
Q ss_pred HHhhhhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhH
Q 025508 74 DQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKM 151 (251)
Q Consensus 74 ~qle~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~ 151 (251)
+.-+|-+|...-..||.|+.-.+-....+++.++.-.+.+...--++-|+-=.+--.-+|.+|+-..+-..||++-+.
T Consensus 3 ~~a~yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~ 80 (497)
T 3iox_A 3 NEADYQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQK 80 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455777888888888888888887777788887777777776655555554445566677777777777777766643
No 71
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=40.85 E-value=22 Score=23.08 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=25.2
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhhHHHhhhhh
Q 025508 140 SNLHQDLAAHKMHMQTLAKKLDQVKFDVEMK 170 (251)
Q Consensus 140 ~qL~~dLaahk~hid~L~~~LeqV~~eve~k 170 (251)
.+|..|+....+-+|-|..|+|+...-|+.|
T Consensus 2 srlee~~r~l~~ivq~lq~r~drle~tvqak 32 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERLDRLEETVQAK 32 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4677788888888999999999988877653
No 72
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=39.68 E-value=63 Score=23.49 Aligned_cols=64 Identities=17% Similarity=0.291 Sum_probs=44.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH--hhhhHHHhhhhhhhhhhHHHHHHHHHhhhhhhHHHHhhhhhcc
Q 025508 183 LLEQEEKNELNKRVQDLEKELLM--NRTKMAEHNRDLTSVRSVETLKLKIMKLRKENEILKRKLNSSS 248 (251)
Q Consensus 183 ~~EqEeKn~l~~kLq~~ekElli--~ktK~~eqqrD~tS~~hVetLKqKiMKLRKENE~LKR~l~~s~ 248 (251)
.+|+.-.+.||..+..|..=+-- .|+.-+.-..+ ++.+|..|...+-.|..+++.|+..+..++
T Consensus 12 ~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~--Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 12 AIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRK--AIDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45666666666666666543221 24444444444 457899999999999999999999987654
No 73
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=39.27 E-value=1.1e+02 Score=22.47 Aligned_cols=40 Identities=5% Similarity=0.140 Sum_probs=23.9
Q ss_pred HHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Q 025508 104 RKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHK 150 (251)
Q Consensus 104 ~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk 150 (251)
+..+..+...|.+.+..+...|+.+ |+-+.+++.|++.+-
T Consensus 16 e~~l~e~E~~~~~~l~~~q~~i~~l-------E~el~~~r~e~~~ql 55 (86)
T 1x8y_A 16 EAKLRDLEDSLARERDTSRRLLAEK-------EREMAEMRARMQQQL 55 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 3445555556666666666666555 555666677766553
No 74
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=39.13 E-value=1.8e+02 Score=24.67 Aligned_cols=85 Identities=20% Similarity=0.230 Sum_probs=50.4
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhh---hhhhhhhhHHHHHHHHHHhH
Q 025508 114 YAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMK---YNLEIQDLKDCLLLEQEEKN 190 (251)
Q Consensus 114 ~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~k---Y~~EIqdLkD~L~~EqEeKn 190 (251)
.+..+.+|..++..+..++..=+.-+.+|+..|.+-+.--.-. .+...+.+.+ -+.|+.-+|..+.--..++.
T Consensus 46 ~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~----se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r 121 (168)
T 3o0z_A 46 LESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHD----SEMIGDLQARITSLQEEVKHLKHNLEKVEGERK 121 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666665555555555555555444211111 1111222222 34567778888888889999
Q ss_pred HHHHHHHHHHHH
Q 025508 191 ELNKRVQDLEKE 202 (251)
Q Consensus 191 ~l~~kLq~~ekE 202 (251)
.|+.++-.+|||
T Consensus 122 ~L~Ekl~~lEKe 133 (168)
T 3o0z_A 122 EAQDMLNHSEKE 133 (168)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999987
No 75
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=38.87 E-value=1.1e+02 Score=25.58 Aligned_cols=38 Identities=8% Similarity=0.168 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHH
Q 025508 118 ARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQT 155 (251)
Q Consensus 118 i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~ 155 (251)
+.....++..++.....|++.|..|..++++.++.+..
T Consensus 94 l~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 94 LISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33445566667777778999999999999888876654
No 76
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=37.51 E-value=86 Score=21.96 Aligned_cols=39 Identities=28% Similarity=0.403 Sum_probs=24.0
Q ss_pred HHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHH
Q 025508 29 EVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTE 67 (251)
Q Consensus 29 Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytE 67 (251)
+++.|-..+..=.+....|+..+..|..++.-|+.+..|
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555555555566666667777777777766666554
No 77
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=37.27 E-value=22 Score=27.89 Aligned_cols=26 Identities=23% Similarity=0.242 Sum_probs=21.7
Q ss_pred HHHHHHHhhhhhhHHHHhhhhhcccC
Q 025508 225 TLKLKIMKLRKENEILKRKLNSSSQE 250 (251)
Q Consensus 225 tLKqKiMKLRKENE~LKR~l~~s~~~ 250 (251)
..+..+-+|+.|+|-||+++..-++.
T Consensus 72 ~~~~~~e~Lq~E~erLr~~v~~lEeg 97 (100)
T 1go4_E 72 RLREDHSQLQAECERLRGLLRAMERG 97 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 47899999999999999999887763
No 78
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=36.98 E-value=1.1e+02 Score=28.61 Aligned_cols=31 Identities=13% Similarity=0.274 Sum_probs=22.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 025508 12 LLSDFDQIYEDFKRAISEVQLLRSSCNAETK 42 (251)
Q Consensus 12 LL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k 42 (251)
++..|-.+++.++..+.+++.||+.-|+=+|
T Consensus 29 ~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk 59 (455)
T 2dq0_A 29 WVDEILKLDTEWRTKLKEINRLRHERNKIAV 59 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667788888888888888876665444
No 79
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=36.81 E-value=1.6e+02 Score=23.40 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=19.9
Q ss_pred hhhHHHHHHHhhhhhhhhhHHHHHHHHHHHh
Q 025508 81 KCQSLKEELKRVNDEHLSKEYELRKVIDSIK 111 (251)
Q Consensus 81 k~qsLkEEL~r~n~e~lskE~Eh~raie~Lk 111 (251)
-...|+-|+.++..++-+.=.|+.+.|.+|+
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~ 46 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRVVLQLK 46 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455777777777666666666666666554
No 80
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=36.66 E-value=1.1e+02 Score=22.78 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhH
Q 025508 118 ARDFEDQIRSLMLEKATNEATISNLHQDLAAHKM 151 (251)
Q Consensus 118 i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~ 151 (251)
+...+..|+.+..+....|+.|..|+..|--.++
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4455666777777778889999999988866554
No 81
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=35.95 E-value=1e+02 Score=22.07 Aligned_cols=27 Identities=19% Similarity=0.350 Sum_probs=20.6
Q ss_pred hHHHHHHHHHhhhhhhHHHHhhhhhcc
Q 025508 222 SVETLKLKIMKLRKENEILKRKLNSSS 248 (251)
Q Consensus 222 hVetLKqKiMKLRKENE~LKR~l~~s~ 248 (251)
.+..|...+-.|+.+|+.|+.++...+
T Consensus 55 ~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 55 KNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455667888888899999988887543
No 82
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=35.86 E-value=3e+02 Score=26.28 Aligned_cols=28 Identities=11% Similarity=0.026 Sum_probs=18.4
Q ss_pred HHHHhhhhHHhHHHHHHhHHHHHHHHHH
Q 025508 47 LEITCNTLKKENERARNSYTESLENLAD 74 (251)
Q Consensus 47 LE~tc~~Lk~dneRLrklytEsL~~~a~ 74 (251)
+...+..|+...+.+.++|+++..-+..
T Consensus 65 ~~~rIe~L~~~L~~~s~s~~~~~~y~~~ 92 (390)
T 1deq_A 65 FTSRINKLRDSLFNYQKNSKDSNTLTKN 92 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3445566777777888888877654433
No 83
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=35.63 E-value=89 Score=28.57 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHH
Q 025508 137 ATISNLHQDLAAHKMHMQTLA 157 (251)
Q Consensus 137 a~I~qL~~dLaahk~hid~L~ 157 (251)
+.|..|+..|....+.|+.|.
T Consensus 26 ~~i~~L~~~l~~~~~~i~~l~ 46 (323)
T 1lwu_C 26 AQIQELSEMWRVNQQFVTRLQ 46 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 84
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=35.19 E-value=1.8e+02 Score=23.68 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=13.1
Q ss_pred hhhhHhhhHHHHHHHhhhhhhhhhH
Q 025508 76 LERKAKCQSLKEELKRVNDEHLSKE 100 (251)
Q Consensus 76 le~rtk~qsLkEEL~r~n~e~lskE 100 (251)
.++|-.-+=|..+|-++.+=+...|
T Consensus 21 ~ECrN~T~lLq~qLTqAQe~l~~~e 45 (121)
T 3mq7_A 21 MEARNVTHLLQQELTEAQKGFQDVE 45 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555444
No 85
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=34.32 E-value=1.9e+02 Score=23.59 Aligned_cols=104 Identities=24% Similarity=0.359 Sum_probs=52.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhH---HHhhh---hhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 025508 128 LMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQV---KFDVE---MKYNLEIQDLKDCLLLEQEEKNELNKRVQDLEK 201 (251)
Q Consensus 128 ~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV---~~eve---~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ek 201 (251)
++.-+|-.+||.+-|+-.- .|..-..-|-..|-|- -.+.+ .-++.-+-+|++.|-.|+.-. +++++.++.
T Consensus 3 ~favkANSeAC~dGLrAq~-ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~---q~~vqeLqg 78 (121)
T 3mq7_A 3 FSMDKANSEAARDGLRAVM-EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG---QKKVEELEG 78 (121)
T ss_dssp --------CHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred chhhhhccHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 3444566677777665432 2333334444444443 22333 334566677787777666554 556777766
Q ss_pred HHHHhhhhHHHhhhhhhhhhhHHHHHHHHHhhhhhhHHHHhhhhhcc
Q 025508 202 ELLMNRTKMAEHNRDLTSVRSVETLKLKIMKLRKENEILKRKLNSSS 248 (251)
Q Consensus 202 Elli~ktK~~eqqrD~tS~~hVetLKqKiMKLRKENE~LKR~l~~s~ 248 (251)
|+-. +..+.+| .-..+-.||++|+.|+-|+.+..
T Consensus 79 EI~~----Lnq~Lq~---------a~ae~erlr~~~~~~~~r~~~~~ 112 (121)
T 3mq7_A 79 EITT----LNHKLQD---------ASAEVERLRRENQVLSVRIADKK 112 (121)
T ss_dssp HHHH----HHHHHHH---------HHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHH----HHHHHHH---------HHHHHHHHHhhchhhhhHhhhcc
Confidence 6422 2222222 23456778999999988887653
No 86
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=34.32 E-value=1.8e+02 Score=23.38 Aligned_cols=31 Identities=19% Similarity=0.252 Sum_probs=23.4
Q ss_pred CChhhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 025508 4 TSDDGMESLLSDFDQIYEDFKRAISEVQLLR 34 (251)
Q Consensus 4 tsDEemesLL~~Fd~i~e~fk~g~~Eiq~Lr 34 (251)
|.|++.+.+...|+.+...++.-+.++..+.
T Consensus 34 t~D~~fe~~~~~f~~~e~~~~~l~k~~~~y~ 64 (244)
T 1uru_A 34 TADEIFDDHLNNFNRQQASANRLQKEFNNYI 64 (244)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5599999999999998876666555555443
No 87
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=33.56 E-value=35 Score=23.58 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHhhhhhhHHHHhhhhhcc
Q 025508 221 RSVETLKLKIMKLRKENEILKRKLNSSS 248 (251)
Q Consensus 221 ~hVetLKqKiMKLRKENE~LKR~l~~s~ 248 (251)
.||+.|-.++-.|..||..|+..+..-.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888888888876543
No 88
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=33.35 E-value=1.8e+02 Score=23.10 Aligned_cols=60 Identities=12% Similarity=0.232 Sum_probs=42.9
Q ss_pred HHHhhhhHHhHHHHHHhHHHHHHHHHHHhhhhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHH
Q 025508 48 EITCNTLKKENERARNSYTESLENLADQLERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDY 114 (251)
Q Consensus 48 E~tc~~Lk~dneRLrklytEsL~~~a~qle~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~ 114 (251)
...+..+.....+|.+++..+|.. +.. ..+++.+|+...+++...-..-+..|+.|++..
T Consensus 49 ~~~i~~i~~~v~~l~~~~~~~L~~-~~~------~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~ 108 (180)
T 1s94_A 49 RAMIDKISDNVDAVKKKHSDILSA-PQT------DDQMKEELEELMTDIKRTANKVRGKLKTIELNI 108 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-CCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888999999888874 332 336888888888888888888888888887643
No 89
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=32.88 E-value=1.3e+02 Score=21.07 Aligned_cols=25 Identities=8% Similarity=0.211 Sum_probs=15.4
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHH
Q 025508 174 EIQDLKDCLLLEQEEKNELNKRVQD 198 (251)
Q Consensus 174 EIqdLkD~L~~EqEeKn~l~~kLq~ 198 (251)
+|..|+.-+.-.++|-.--|.+|-|
T Consensus 26 dV~al~~~v~~ak~eA~RAN~RlDN 50 (52)
T 1jcd_A 26 DANAARSDAQAAKDDAARANQRADN 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4555666666666666666666644
No 90
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=32.77 E-value=1.8e+02 Score=22.99 Aligned_cols=49 Identities=16% Similarity=0.173 Sum_probs=20.2
Q ss_pred HHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHH
Q 025508 107 IDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQT 155 (251)
Q Consensus 107 ie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~ 155 (251)
|+.|+..-+.--++|++=.-.+..-...-..-|++|..+|+-.+.+.|.
T Consensus 17 Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~ 65 (120)
T 3i00_A 17 IERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQ 65 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443333333333333333333333334444555555554444333
No 91
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=32.58 E-value=1.8e+02 Score=26.09 Aligned_cols=74 Identities=18% Similarity=0.214 Sum_probs=51.3
Q ss_pred HHHHHHHHh---HHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhh
Q 025508 103 LRKVIDSIK---QDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQ 176 (251)
Q Consensus 103 h~raie~Lk---~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve~kY~~EIq 176 (251)
|+.-|.++. .+|+..|..-+..|..+-+-..++|--|.-|.-++.+....+.....|..-+..+.-++-.-+-|
T Consensus 82 He~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~~DyVS~s~t~~Q 158 (242)
T 3c9i_A 82 HEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQADYVSKTATTSQ 158 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCBSSCCSCE
T ss_pred chhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhhhhhhhhhhhhhh
Confidence 444444444 47888888888888888888888888888877777777777777777766666665544443333
No 92
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=30.08 E-value=2.4e+02 Score=23.38 Aligned_cols=76 Identities=18% Similarity=0.280 Sum_probs=53.8
Q ss_pred hHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHH
Q 025508 79 KAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQT 155 (251)
Q Consensus 79 rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~ 155 (251)
-+||..|-++|.-+..-+.|+|---.++-+ -...|+..|..|..++..+-.-----|..|..|..+|......+..
T Consensus 41 E~k~~eLEeeL~~v~~nlKsLE~seekasq-rEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~ 116 (155)
T 2efr_A 41 EGKSAELEEELKTVTNNLKSLEAQAEKYSQ-KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYA 116 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999999998876666543 3467888888888888777765555555666666555544444443
No 93
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=29.39 E-value=2.2e+02 Score=22.80 Aligned_cols=91 Identities=12% Similarity=0.203 Sum_probs=56.9
Q ss_pred hHHHHHHHhhhhhHHHhhhhh--hhhhhhh----------hHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHhhhhh
Q 025508 150 KMHMQTLAKKLDQVKFDVEMK--YNLEIQD----------LKDCLLLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDL 217 (251)
Q Consensus 150 k~hid~L~~~LeqV~~eve~k--Y~~EIqd----------LkD~L~~EqEeKn~l~~kLq~~ekElli~ktK~~eqqrD~ 217 (251)
..||+.++.-+|.--.++... |.. +.. +=|-+.-.+++...|...++.+.+|+-=.|..++.-+-
T Consensus 27 ee~L~~vA~~vd~km~ei~~~~~~~~-l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~-- 103 (138)
T 3hnw_A 27 EEYLQRVASYINNKITEFNKEESYRR-MSAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQI-- 103 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHT-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 356777777777666666644 321 111 23445556677777888888888877766666655443
Q ss_pred hhhhhHHHHHHHHHhhhhhhHHHHhhhhhc
Q 025508 218 TSVRSVETLKLKIMKLRKENEILKRKLNSS 247 (251)
Q Consensus 218 tS~~hVetLKqKiMKLRKENE~LKR~l~~s 247 (251)
..+.+++.+-+|++++..|.+++...
T Consensus 104 ----k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 104 ----KAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777666543
No 94
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=28.98 E-value=2.2e+02 Score=22.65 Aligned_cols=86 Identities=23% Similarity=0.327 Sum_probs=60.1
Q ss_pred hhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHH
Q 025508 78 RKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLA 157 (251)
Q Consensus 78 ~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~ 157 (251)
-|+-...|..++-.+++ -++++-.-++.++.. ...+..+=-.+|+.+..+--+.|+.+.-|++..++.+.-++---
T Consensus 4 t~~~~~~lq~~~~ql~~-qL~k~~~~r~~Le~~---w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL 79 (112)
T 1x79_B 4 TRDQVKKLQLMLRQAND-QLEKTMKDKQELEDF---IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQM 79 (112)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566666666666 556666666666544 56666677788888888888999999999999999988776655
Q ss_pred hhhhhHHHhh
Q 025508 158 KKLDQVKFDV 167 (251)
Q Consensus 158 ~~LeqV~~ev 167 (251)
.+|-.=+..|
T Consensus 80 ~~Lt~~Re~V 89 (112)
T 1x79_B 80 AVLMQSREQV 89 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5554444333
No 95
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=28.98 E-value=1.4e+02 Score=20.40 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=27.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHH
Q 025508 112 QDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMH 152 (251)
Q Consensus 112 ~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~h 152 (251)
++--..+.+||.++..+-.+-..=.+.|..|+.+++..+..
T Consensus 18 ~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 18 QKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677777777777777666666677777766666543
No 96
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=28.61 E-value=1.4e+02 Score=20.40 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhhhhhhhhhHHHHHHHHHhhh
Q 025508 191 ELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIMKLR 234 (251)
Q Consensus 191 ~l~~kLq~~ekElli~ktK~~eqqrD~tS~~hVetLKqKiMKLR 234 (251)
|+-.|+..+|.-+-+.-||.+--.-+.+|.+. .|||+|-+|=
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~--KlKqRit~lE 43 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQM--KMKQRLSQLE 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 56788999999999999999999999999875 6888887763
No 97
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=28.38 E-value=1.1e+02 Score=26.05 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=22.8
Q ss_pred HHHHHHHhhhhHHhHHHHHHhHHHHHHHH
Q 025508 44 REALEITCNTLKKENERARNSYTESLENL 72 (251)
Q Consensus 44 ReALE~tc~~Lk~dneRLrklytEsL~~~ 72 (251)
=..|...+..|.++|+||+.=.+.++..|
T Consensus 154 ~~~L~~~n~~LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 154 IAENQAKNEHLQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567788899999999999888776554
No 98
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=28.08 E-value=1.9e+02 Score=21.60 Aligned_cols=14 Identities=43% Similarity=0.605 Sum_probs=10.1
Q ss_pred HhHHHHHHHHHHHH
Q 025508 188 EKNELNKRVQDLEK 201 (251)
Q Consensus 188 eKn~l~~kLq~~ek 201 (251)
+--.|||++|-+|-
T Consensus 87 evasLnRriqllEE 100 (101)
T 3u59_A 87 EVASLNRRIQLVEE 100 (101)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcc
Confidence 45678888887763
No 99
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=27.75 E-value=2.5e+02 Score=22.97 Aligned_cols=29 Identities=17% Similarity=0.344 Sum_probs=19.8
Q ss_pred CChhhHHHHHhhHHHHHHHHHHHHHHHHH
Q 025508 4 TSDDGMESLLSDFDQIYEDFKRAISEVQL 32 (251)
Q Consensus 4 tsDEemesLL~~Fd~i~e~fk~g~~Eiq~ 32 (251)
|.|++.+.+-..|+.++..++.-+.++..
T Consensus 49 T~D~~Fe~~~~~f~~~e~~~~~l~k~~k~ 77 (251)
T 2fic_A 49 TKDEQFEQCVQNFNKQLTEGTRLQKDLRT 77 (251)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45999999999998888866655555443
No 100
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=27.23 E-value=1.2e+02 Score=27.85 Aligned_cols=54 Identities=24% Similarity=0.442 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHH
Q 025508 145 DLAAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEEKNELNKRVQDL 199 (251)
Q Consensus 145 dLaahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEeKn~l~~kLq~~ 199 (251)
+|.+.+..|.-|..........++ .++.++++|+..+.-|...+..|++.+|.+
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIK-DTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 101
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=27.23 E-value=1.4e+02 Score=20.59 Aligned_cols=41 Identities=15% Similarity=0.258 Sum_probs=27.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHH
Q 025508 112 QDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMH 152 (251)
Q Consensus 112 ~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~h 152 (251)
+.-...+.+||.++..+-.+-+.=.+.|..|+.+++..+..
T Consensus 18 ~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 18 KRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677778887777777777777777777776665543
No 102
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=25.71 E-value=1.9e+02 Score=20.90 Aligned_cols=40 Identities=13% Similarity=0.310 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhh
Q 025508 119 RDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKK 159 (251)
Q Consensus 119 ~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~ 159 (251)
++|+.+|..+...-+.++ .|.+|+.+=-+.|+-|..+-.+
T Consensus 27 ~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LKDeI~~lL~~ 66 (76)
T 1zhc_A 27 NQLDDDIKTAEQQNASDA-EVSHMKKQKLKLKDEIHSMIIE 66 (76)
T ss_dssp HHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCChH-HHHHHHHHHHHhHHHHHHHHHH
Confidence 578888888877777777 9999999999999888776554
No 103
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=25.47 E-value=1.1e+02 Score=20.27 Aligned_cols=33 Identities=15% Similarity=0.241 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Q 025508 118 ARDFEDQIRSLMLEKATNEATISNLHQDLAAHK 150 (251)
Q Consensus 118 i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk 150 (251)
.+.||+++..++..+..=+.-+.+|+.-++.+.
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~~e 35 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKENAECE 35 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcccc
Confidence 467888898888888888888888888777553
No 104
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=25.11 E-value=2.4e+02 Score=21.79 Aligned_cols=46 Identities=15% Similarity=0.312 Sum_probs=34.9
Q ss_pred hhhHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHH
Q 025508 77 ERKAKCQSLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIR 126 (251)
Q Consensus 77 e~rtk~qsLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~ 126 (251)
+|-.|+.+=-.|+.-...-+-.+|.-|++ +|+.|+..|+.|-.+|-
T Consensus 40 eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~k----mKq~YEeEI~rLr~eLe 85 (92)
T 3vp9_A 40 DYDFKMNQQLAEMQQIRNTVYERELTHRK----MKDAYEEEIKHLKLGLE 85 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 56666777778888888888888888875 67888888877766553
No 105
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=24.81 E-value=3e+02 Score=24.62 Aligned_cols=132 Identities=16% Similarity=0.179 Sum_probs=0.0
Q ss_pred hhhHhhhHHHHHHHh----hhhhhhhh----HHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 025508 77 ERKAKCQSLKEELKR----VNDEHLSK----EYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAA 148 (251)
Q Consensus 77 e~rtk~qsLkEEL~r----~n~e~lsk----E~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaa 148 (251)
++.+....+..+|+- +..++.-. -.....+.+.|+......+.++-.+|.-+..+.. +.
T Consensus 67 el~~l~~~~~~el~~y~~~l~~qL~P~~~e~~~~l~~~~~~Lr~~L~~dlEelR~~L~Py~~el~-------------~~ 133 (307)
T 2l7b_A 67 ELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARLGADMEDVCGRLVQYRGEVQ-------------AM 133 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCSCCSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HH
Q ss_pred hhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHH-HHHHHHhHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhhhhHHHHH
Q 025508 149 HKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCL-LLEQEEKNELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLK 227 (251)
Q Consensus 149 hk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L-~~EqEeKn~l~~kLq~~ekElli~ktK~~eqqrD~tS~~hVetLK 227 (251)
...||+.|..+|.....+...+-...+++|+.-| -+-.+=+..+...++.+..-|.- +++..|.-.+ +|+++|
T Consensus 134 l~~~~eelr~kL~Py~~EL~~~~~~~~eeLr~~L~py~eeLr~kl~~~veelr~~L~P----y~e~~~~~~~--~v~~~k 207 (307)
T 2l7b_A 134 LGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQAGAREGAERGLSAIRERLGP----LVEQGRVRAA--TVGSLA 207 (307)
T ss_dssp SSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSHHHHHHHHHHHHCSS----SCTTTTTHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHh--hhhhhh
No 106
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=24.42 E-value=50 Score=28.66 Aligned_cols=33 Identities=33% Similarity=0.362 Sum_probs=26.1
Q ss_pred Hhhhhhh--hhhhHHHHHHHHHhhhhhhHHHHhhh
Q 025508 212 EHNRDLT--SVRSVETLKLKIMKLRKENEILKRKL 244 (251)
Q Consensus 212 eqqrD~t--S~~hVetLKqKiMKLRKENE~LKR~l 244 (251)
|-+|++. +..+|..|+.++-+|.|||+.|.|--
T Consensus 150 E~irELi~~~L~~i~~L~a~N~hLqkENeRL~~e~ 184 (186)
T 3q4f_C 150 EVIRELICYCLDTIAENQAKNEHLQKENERLLRDW 184 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3345543 56789999999999999999998753
No 107
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=24.29 E-value=1e+02 Score=21.31 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=28.2
Q ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHhhh
Q 025508 133 ATNEATISNLHQDLAAHKMHMQTLAKKLDQVKFDVE 168 (251)
Q Consensus 133 at~Ea~I~qL~~dLaahk~hid~L~~~LeqV~~eve 168 (251)
+...+-+..|+.+++..+.-+..|..+++.....+.
T Consensus 15 ~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 15 TPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445567888999999999999988888887777654
No 108
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=24.22 E-value=66 Score=20.78 Aligned_cols=18 Identities=39% Similarity=0.549 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhhHHHHHH
Q 025508 139 ISNLHQDLAAHKMHMQTL 156 (251)
Q Consensus 139 I~qL~~dLaahk~hid~L 156 (251)
|.-|+|+++|.|..|-+|
T Consensus 4 iaalkqeiaalkkeiaal 21 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAAL 21 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455666666666655554
No 109
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=24.15 E-value=4.7e+02 Score=24.91 Aligned_cols=31 Identities=16% Similarity=0.309 Sum_probs=15.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhhHHH
Q 025508 123 DQIRSLMLEKATNEATISNLHQDLAAHKMHM 153 (251)
Q Consensus 123 ~qi~~~~~q~at~Ea~I~qL~~dLaahk~hi 153 (251)
+-++.-+.+---||.+++++-.||..|-.+|
T Consensus 95 ~~lk~~~~q~~dndn~~~e~s~eLe~~i~~l 125 (390)
T 1deq_A 95 ELMRGDFAKANNNDNTFKQINEDLRSRIEIL 125 (390)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 3344444555555666666555554444333
No 110
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=24.03 E-value=59 Score=24.91 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHH
Q 025508 120 DFEDQIRSLMLEKATNEATISNLHQ 144 (251)
Q Consensus 120 ~LE~qi~~~~~q~at~Ea~I~qL~~ 144 (251)
.|++.|..+-.+.+.-++-|.++..
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 111
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=23.86 E-value=33 Score=29.69 Aligned_cols=46 Identities=28% Similarity=0.256 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhH
Q 025508 16 FDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSY 65 (251)
Q Consensus 16 Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrkly 65 (251)
|-.-|.+|.+...|.+.||... ..=++.......|+.||+||+++.
T Consensus 14 ~~~~~~~~~~l~~eN~~Lk~e~----~~l~~~~~~~~~l~~En~rLr~lL 59 (255)
T 2j5u_A 14 AVDGVVDLKNTYTENQHLKERL----EELAQLESEVADLKKENKDLKESL 59 (255)
T ss_dssp ------------CTTTTHHHHH----HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444555445555555432 222333445677888888888874
No 112
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=23.68 E-value=2.6e+02 Score=24.24 Aligned_cols=47 Identities=11% Similarity=0.127 Sum_probs=28.4
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhh
Q 025508 114 YAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKL 160 (251)
Q Consensus 114 ~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~L 160 (251)
-..-|..|-.+++-+-.+..+.+.-|.+|+..|+..+..+......+
T Consensus 18 ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~ 64 (190)
T 4emc_A 18 ADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQT 64 (190)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 33445566666666666666777777777777777777765444333
No 113
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=23.39 E-value=49 Score=20.98 Aligned_cols=24 Identities=17% Similarity=0.426 Sum_probs=20.3
Q ss_pred HHHHHHHhhHHHHHHHhhhhhHHH
Q 025508 142 LHQDLAAHKMHMQTLAKKLDQVKF 165 (251)
Q Consensus 142 L~~dLaahk~hid~L~~~LeqV~~ 165 (251)
.+.+|++.|..||.|-.+|++...
T Consensus 4 IkkELtQIK~kvDsLLe~Le~~~~ 27 (28)
T 1txp_A 4 IKKELTQIKQKVDSLLENLEKIEK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 467899999999999999998643
No 114
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=23.10 E-value=2.3e+02 Score=20.87 Aligned_cols=46 Identities=15% Similarity=0.201 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHh
Q 025508 19 IYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNS 64 (251)
Q Consensus 19 i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrkl 64 (251)
.-++++.--.|+..++.++..+.+.|.-|+..+..|-.+...|.-.
T Consensus 12 ~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 12 QEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667888899999999999999999999999988877655
No 115
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=22.87 E-value=2.6e+02 Score=21.46 Aligned_cols=16 Identities=6% Similarity=0.185 Sum_probs=12.8
Q ss_pred hHHHHHHhHHHHHHHH
Q 025508 57 ENERARNSYTESLENL 72 (251)
Q Consensus 57 dneRLrklytEsL~~~ 72 (251)
-++||..=|++.+++|
T Consensus 65 qkeRL~~dF~~l~~~f 80 (97)
T 1hs7_A 65 QNGKLSADFKNLKTKY 80 (97)
T ss_dssp HCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHH
Confidence 5788888888888776
No 116
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=22.65 E-value=2.5e+02 Score=21.19 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=14.9
Q ss_pred hhhHHHHHHHHHhhhhhhHHHHhhhhhccc
Q 025508 220 VRSVETLKLKIMKLRKENEILKRKLNSSSQ 249 (251)
Q Consensus 220 ~~hVetLKqKiMKLRKENE~LKR~l~~s~~ 249 (251)
++-+|.|---|.-|.=||-.|.-||.+.++
T Consensus 45 ~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 45 NKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 334445555555566666666666655544
No 117
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=22.43 E-value=1.5e+02 Score=20.87 Aligned_cols=36 Identities=14% Similarity=0.283 Sum_probs=22.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 025508 112 QDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLA 147 (251)
Q Consensus 112 ~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLa 147 (251)
..-...+.+||.++..+-.+-+.=.+.|.+|++.++
T Consensus 26 ~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 26 ARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334456777888888777666666666666665543
No 118
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=22.23 E-value=3e+02 Score=22.00 Aligned_cols=31 Identities=13% Similarity=0.171 Sum_probs=17.6
Q ss_pred ChhhHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 025508 5 SDDGMESLLSDFDQIYEDFKRAISEVQLLRS 35 (251)
Q Consensus 5 sDEemesLL~~Fd~i~e~fk~g~~Eiq~Lrs 35 (251)
+-..+++||.....|..++..--..|+.|..
T Consensus 36 Dl~~ve~llkkH~~le~ei~~~~~~v~~l~~ 66 (210)
T 3pdy_A 36 DLPSVEAQLGSHRGLHQSIEEFRAKIERARS 66 (210)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777766666655544444444443
No 119
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=21.83 E-value=1.3e+02 Score=27.88 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=22.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 025508 12 LLSDFDQIYEDFKRAISEVQLLRSSCNAETK 42 (251)
Q Consensus 12 LL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k 42 (251)
++..|-.+++.++....+++.||+.-|+=+|
T Consensus 28 ~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk 58 (425)
T 2dq3_A 28 LVDKVLELDKRRREIIKRLEALRSERNKLSK 58 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667788888888888888876665444
No 120
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=21.63 E-value=1.5e+02 Score=22.16 Aligned_cols=44 Identities=23% Similarity=0.335 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhhhhhhhhhHHHHHHHHHhhhhh
Q 025508 191 ELNKRVQDLEKELLMNRTKMAEHNRDLTSVRSVETLKLKIMKLRKE 236 (251)
Q Consensus 191 ~l~~kLq~~ekElli~ktK~~eqqrD~tS~~hVetLKqKiMKLRKE 236 (251)
++-.|+..++..+-+.-||++--.-+.+|.+. .|||+|-+|=+.
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~--KLKqRit~LE~~ 47 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQ--KLKQRLTKVEKF 47 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 57789999999999999999999999999885 689998887553
No 121
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=21.55 E-value=2.5e+02 Score=20.68 Aligned_cols=70 Identities=10% Similarity=0.140 Sum_probs=30.5
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHhhhh
Q 025508 84 SLKEELKRVNDEHLSKEYELRKVIDSIKQDYAAKARDFEDQIRSLMLEKATNEATISNLHQDLAAHKMHMQTLAKKLD 161 (251)
Q Consensus 84 sLkEEL~r~n~e~lskE~Eh~raie~Lk~~~~~~i~~LE~qi~~~~~q~at~Ea~I~qL~~dLaahk~hid~L~~~Le 161 (251)
.+.+|++.+.+.+. ++..-++.++.-........++|..+ .|.-|-....|-..-......|.-|..||+
T Consensus 18 ~~eeel~~lke~l~-k~e~~rkele~~~~~l~~ek~~L~~q-------l~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 18 EQLKQMDKMKEDLA-KTERIKKELEEQNVTLLEQKNDLFGS-------MKQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555544432 33333333333333333333333333 444444444444444444455555555554
No 122
>4e29_A Chimeric WZZB chain length determinant protein; regulation of LPS O-antigen chain length, inner membran membrane protein; 1.60A {Shigella flexneri} PDB: 4e2c_A 4e2h_A 3b8p_A
Probab=21.46 E-value=2.7e+02 Score=24.44 Aligned_cols=54 Identities=17% Similarity=0.289 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHH-HhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHHH
Q 025508 135 NEATISNLHQDLA-AHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQEE 188 (251)
Q Consensus 135 ~Ea~I~qL~~dLa-ahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqEe 188 (251)
++-+..++..+|. +....+..|...+++....+..+|+..|+-|+-.|.+.+..
T Consensus 111 ~~~v~~el~~~l~~~i~~r~~~l~~ql~~~~~~ak~qr~~rI~rL~~AL~IA~aa 165 (248)
T 4e29_A 111 DDKVNQELERDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIEEALRYADEA 165 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344444444443 23446777888899999999999999999999999998765
No 123
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=21.13 E-value=1e+02 Score=28.62 Aligned_cols=13 Identities=23% Similarity=0.475 Sum_probs=8.2
Q ss_pred hhhhhhhhhHHHH
Q 025508 170 KYNLEIQDLKDCL 182 (251)
Q Consensus 170 kY~~EIqdLkD~L 182 (251)
+++++|||||+.+
T Consensus 49 ~l~n~~~~l~gnI 61 (412)
T 3u06_A 49 ELHNTVMDLRDNI 61 (412)
T ss_dssp HHHHHHHHHTCSE
T ss_pred HHHHHHHHhCCCE
Confidence 4667777776544
No 124
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.39 E-value=4.6e+02 Score=23.40 Aligned_cols=27 Identities=22% Similarity=0.138 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHhhhhhhHHHHhhhhhc
Q 025508 221 RSVETLKLKIMKLRKENEILKRKLNSS 247 (251)
Q Consensus 221 ~hVetLKqKiMKLRKENE~LKR~l~~s 247 (251)
.-+..|+..-.+++|+.+.+.-.+...
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (487)
T 3oja_A 442 HKETQLAEENARLKKLNGEADLALASA 468 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhhhhhhhhhhhhhhHhc
Confidence 346678888888888888877766554
No 125
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=20.09 E-value=2.5e+02 Score=25.59 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=10.5
Q ss_pred hhhHHHHHHHHHHHHHhhHH
Q 025508 133 ATNEATISNLHQDLAAHKMH 152 (251)
Q Consensus 133 at~Ea~I~qL~~dLaahk~h 152 (251)
...++-|.+|.+.|+.....
T Consensus 36 ~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 36 RVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455566666655554443
No 126
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=20.04 E-value=1.6e+02 Score=19.26 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 025508 118 ARDFEDQIRSLMLEKATNEATISNLHQD 145 (251)
Q Consensus 118 i~~LE~qi~~~~~q~at~Ea~I~qL~~d 145 (251)
.+.||++|..++..+...+.-|..|+.=
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3678999999999888888888888753
Done!