Query 025508
Match_columns 251
No_of_seqs 16 out of 18
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 11:45:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025508.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025508hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1seta1 a.2.7.1 (A:1-110) Sery 51.9 34 0.0025 23.8 8.6 29 13-41 27-55 (110)
2 d1fxka_ a.2.5.1 (A:) Prefoldin 37.2 60 0.0044 22.5 9.8 31 81-111 9-42 (107)
3 d1f5na1 a.114.1.1 (A:284-583) 37.2 78 0.0057 23.7 22.7 21 224-244 280-300 (300)
4 d1am9a_ a.38.1.1 (A:) SREBP-1a 29.1 53 0.0038 21.8 5.3 63 183-247 12-76 (80)
5 d1gs9a_ a.24.1.1 (A:) Apolipop 26.6 1E+02 0.0076 21.9 12.0 41 147-187 48-88 (144)
6 d2jn6a1 a.4.1.19 (A:1-89) Unch 23.6 16 0.0011 24.7 1.6 20 225-244 63-82 (89)
7 d1wa8a1 a.25.3.1 (A:1-99) ESAT 21.2 55 0.004 21.6 4.2 55 4-60 5-63 (99)
8 d1hcia4 a.7.1.1 (A:633-746) al 18.5 1.3E+02 0.0093 19.9 11.7 61 106-166 2-73 (114)
9 d1nlwa_ a.38.1.1 (A:) Mad prot 17.4 50 0.0036 21.7 3.2 33 211-245 46-78 (79)
10 d1v9da_ a.207.1.1 (A:) Diaphan 16.2 1.5E+02 0.011 23.7 6.5 63 8-70 206-268 (332)
No 1
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=51.94 E-value=34 Score=23.81 Aligned_cols=29 Identities=10% Similarity=0.126 Sum_probs=22.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 025508 13 LSDFDQIYEDFKRAISEVQLLRSSCNAET 41 (251)
Q Consensus 13 L~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~ 41 (251)
+..|-.+++.++..+.+++.||+.-|.=+
T Consensus 27 ld~i~~ld~~rr~l~~~~e~l~~~rN~~s 55 (110)
T d1seta1 27 LEALLALDREVQELKKRLQEVQTERNQVA 55 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888899999999999988766543
No 2
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=37.19 E-value=60 Score=22.47 Aligned_cols=31 Identities=16% Similarity=0.355 Sum_probs=19.7
Q ss_pred hhhHHHHHHHhhhhhhhhhHH---HHHHHHHHHh
Q 025508 81 KCQSLKEELKRVNDEHLSKEY---ELRKVIDSIK 111 (251)
Q Consensus 81 k~qsLkEEL~r~n~e~lskE~---Eh~raie~Lk 111 (251)
+|++|..++..+..+.-..+. ||..+++.|.
T Consensus 9 ~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~ 42 (107)
T d1fxka_ 9 QFQQLQQQAQAISVQKQTVEMQINETQKALEELS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777666666555 6666665554
No 3
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.18 E-value=78 Score=23.75 Aligned_cols=21 Identities=19% Similarity=0.252 Sum_probs=15.9
Q ss_pred HHHHHHHHhhhhhhHHHHhhh
Q 025508 224 ETLKLKIMKLRKENEILKRKL 244 (251)
Q Consensus 224 etLKqKiMKLRKENE~LKR~l 244 (251)
+.++.+...|+++.+.|+.++
T Consensus 280 ~~~~~~~~~l~~ei~~Lk~~l 300 (300)
T d1f5na1 280 EGFQKESRIMKNEIQDLQTKM 300 (300)
T ss_dssp HTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 456777888888888888764
No 4
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.13 E-value=53 Score=21.81 Aligned_cols=63 Identities=17% Similarity=0.295 Sum_probs=40.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH--hhhhHHHhhhhhhhhhhHHHHHHHHHhhhhhhHHHHhhhhhc
Q 025508 183 LLEQEEKNELNKRVQDLEKELLM--NRTKMAEHNRDLTSVRSVETLKLKIMKLRKENEILKRKLNSS 247 (251)
Q Consensus 183 ~~EqEeKn~l~~kLq~~ekElli--~ktK~~eqqrD~tS~~hVetLKqKiMKLRKENE~LKR~l~~s 247 (251)
.+|+.-++.|+..+..|..=+-- .|+.-+.-..+ ++.+|..|...+-.|..+|+.|+..+...
T Consensus 12 ~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~--a~~yI~~L~~~~~~L~~e~~~lk~~~~~~ 76 (80)
T d1am9a_ 12 AIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRK--AIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677777777777777542211 13333333332 45688888888888888888888877653
No 5
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=26.57 E-value=1e+02 Score=21.94 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=32.9
Q ss_pred HHhhHHHHHHHhhhhhHHHhhhhhhhhhhhhhHHHHHHHHH
Q 025508 147 AAHKMHMQTLAKKLDQVKFDVEMKYNLEIQDLKDCLLLEQE 187 (251)
Q Consensus 147 aahk~hid~L~~~LeqV~~eve~kY~~EIqdLkD~L~~EqE 187 (251)
....++++.|..+|.-...++..++..++.+|+.-|.-.-+
T Consensus 48 ~~l~~~~~~l~~~l~p~~~e~~~~l~~~~e~lr~~l~~~le 88 (144)
T d1gs9a_ 48 KELKAYKSELEEQLTPVAEETRARLSKELQAAQARLGADME 88 (144)
T ss_dssp HHHHHHHHHHTTSCCCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34467888899999999999999999999999887765443
No 6
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=23.58 E-value=16 Score=24.75 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=15.6
Q ss_pred HHHHHHHhhhhhhHHHHhhh
Q 025508 225 TLKLKIMKLRKENEILKRKL 244 (251)
Q Consensus 225 tLKqKiMKLRKENE~LKR~l 244 (251)
...+.|-.||+||+.||.-.
T Consensus 63 ~~~~ei~~L~~En~~Lk~~~ 82 (89)
T d2jn6a1 63 SEAEQIRQLKKENALQRART 82 (89)
T ss_dssp HTHHHHHHHHHCGGGGGGTT
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999998744
No 7
>d1wa8a1 a.25.3.1 (A:1-99) ESAT-6 like protein EsxB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=21.17 E-value=55 Score=21.65 Aligned_cols=55 Identities=16% Similarity=0.284 Sum_probs=35.7
Q ss_pred CChhhHHHHHhhHHHHHHHHHHHHHHHHH----HHhhhhhHHHhHHHHHHHhhhhHHhHHH
Q 025508 4 TSDDGMESLLSDFDQIYEDFKRAISEVQL----LRSSCNAETKRREALEITCNTLKKENER 60 (251)
Q Consensus 4 tsDEemesLL~~Fd~i~e~fk~g~~Eiq~----Lrs~~~aE~k~ReALE~tc~~Lk~dneR 60 (251)
.++++|.....+|+....++...+.+++. |.+.|.-. =+.|....-......-.+
T Consensus 5 vd~~~l~~~A~~~~~~~~~l~~~l~~l~~~v~~l~~~W~G~--A~~af~~~~~~w~~~~~~ 63 (99)
T d1wa8a1 5 TDAATLAQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGA--AGTAAQAAVVRFQEAANK 63 (99)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSS--HHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999998877654 44444333 234444444444444333
No 8
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.48 E-value=1.3e+02 Score=19.93 Aligned_cols=61 Identities=16% Similarity=0.252 Sum_probs=42.5
Q ss_pred HHHHHhHHHHHhHHHHHHHHHHHHHHhhhh--------H---HHHHHHHHHHHHhhHHHHHHHhhhhhHHHh
Q 025508 106 VIDSIKQDYAAKARDFEDQIRSLMLEKATN--------E---ATISNLHQDLAAHKMHMQTLAKKLDQVKFD 166 (251)
Q Consensus 106 aie~Lk~~~~~~i~~LE~qi~~~~~q~at~--------E---a~I~qL~~dLaahk~hid~L~~~LeqV~~e 166 (251)
|=++|.+.|...++++++=|.......++. + .-...+..+|.+|...|+.+...=+++...
T Consensus 2 ~~~~L~~~F~~~a~~~~~Wi~e~~~~l~~~~~~~~~~ve~~l~~h~~~e~el~~~~~~i~~l~~~g~~L~~~ 73 (114)
T d1hcia4 2 ANERLRRQFAAQANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQEA 73 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 457788889999999887777665555431 1 123457788888888888887766666553
No 9
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.44 E-value=50 Score=21.70 Aligned_cols=33 Identities=30% Similarity=0.361 Sum_probs=23.6
Q ss_pred HHhhhhhhhhhhHHHHHHHHHhhhhhhHHHHhhhh
Q 025508 211 AEHNRDLTSVRSVETLKLKIMKLRKENEILKRKLN 245 (251)
Q Consensus 211 ~eqqrD~tS~~hVetLKqKiMKLRKENE~LKR~l~ 245 (251)
+++++++.. .+..+...+..|++++..|++++.
T Consensus 46 ~~yI~~L~~--~~~~l~~~~~~L~~~~~~L~~~l~ 78 (79)
T d1nlwa_ 46 KLHIKKLED--SDRKAVHQIDQLQREQRHLKRQLE 78 (79)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444442 466788888899999999998874
No 10
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.17 E-value=1.5e+02 Score=23.73 Aligned_cols=63 Identities=14% Similarity=0.163 Sum_probs=30.6
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhhhhHHhHHHHHHhHHHHHH
Q 025508 8 GMESLLSDFDQIYEDFKRAISEVQLLRSSCNAETKRREALEITCNTLKKENERARNSYTESLE 70 (251)
Q Consensus 8 emesLL~~Fd~i~e~fk~g~~Eiq~Lrs~~~aE~k~ReALE~tc~~Lk~dneRLrklytEsL~ 70 (251)
.++.|-.++..+..+++.--.+++.+.+......+-+..+..-......+-..|...|.+.-.
T Consensus 206 ~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~d~f~~~~~~Fl~~a~~~l~~l~~~~~~~~~ 268 (332)
T d1v9da_ 206 SAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMET 268 (332)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666555554444344444443333333333344433333333
Done!