BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025511
         (251 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WI9|A Chain A, Solution Structure Of The Pci Domain From Mouse
           Hypothetical Protein Aah51541
          Length = 72

 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 44/64 (68%)

Query: 139 GDRDLLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIY 198
           G    L +F+ YIKK K + LEDLA +  LRTQ+ INRI  L   G L+GV+DDRGK+IY
Sbjct: 4   GSSGFLTEFINYIKKSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIY 63

Query: 199 ISQA 202
           I+ +
Sbjct: 64  ITPS 67


>pdb|1P3W|B Chain B, X-Ray Crystal Structure Of E. Coli Iscs
 pdb|1P3W|A Chain A, X-Ray Crystal Structure Of E. Coli Iscs
          Length = 404

 Score = 29.3 bits (64), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 4/44 (9%)

Query: 193 RGKYIYISQAEMKAVAD---YIKRQGRVSISHLASKSNQFIDLE 233
           +GK+I  S+ E KAV D    ++R+G   +++LA + N  IDL+
Sbjct: 93  KGKHIITSKTEHKAVLDTCRQLEREG-FEVTYLAPQRNGIIDLK 135


>pdb|3LVJ|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1)
 pdb|3LVJ|B Chain B, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1)
 pdb|3LVK|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 2)
 pdb|3LVL|B Chain B, Crystal Structure Of E.Coli Iscs-Iscu Complex
 pdb|3LVM|A Chain A, Crystal Structure Of E.Coli Iscs
 pdb|3LVM|B Chain B, Crystal Structure Of E.Coli Iscs
          Length = 423

 Score = 29.3 bits (64), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 4/44 (9%)

Query: 193 RGKYIYISQAEMKAVADY---IKRQGRVSISHLASKSNQFIDLE 233
           +GK+I  S+ E KAV D    ++R+G   +++LA + N  IDL+
Sbjct: 112 KGKHIITSKTEHKAVLDTCRQLEREG-FEVTYLAPQRNGIIDLK 154


>pdb|3RQC|A Chain A, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
           Dehydrogenase Multienzyme Complex From Thermoplasma
           Acidophilum
 pdb|3RQC|B Chain B, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
           Dehydrogenase Multienzyme Complex From Thermoplasma
           Acidophilum
 pdb|3RQC|C Chain C, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
           Dehydrogenase Multienzyme Complex From Thermoplasma
           Acidophilum
 pdb|3RQC|D Chain D, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
           Dehydrogenase Multienzyme Complex From Thermoplasma
           Acidophilum
 pdb|3RQC|E Chain E, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
           Dehydrogenase Multienzyme Complex From Thermoplasma
           Acidophilum
 pdb|3RQC|F Chain F, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
           Dehydrogenase Multienzyme Complex From Thermoplasma
           Acidophilum
 pdb|3RQC|G Chain G, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
           Dehydrogenase Multienzyme Complex From Thermoplasma
           Acidophilum
          Length = 224

 Score = 27.7 bits (60), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 2/85 (2%)

Query: 163 AAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVSISHL 222
           A E KL+  E  +   ++ N+G + G+M      I   +  +  V   ++R+GR  +   
Sbjct: 133 ARENKLQLDEVQDSTFTITNVGTIGGIMST--PIINYPEVAILGVHRILEREGRKYMYLS 190

Query: 223 ASKSNQFIDLETKAQFVEDLSGVEE 247
            S  ++ ID     +F+ DL  V E
Sbjct: 191 LSCDHRLIDGAVATRFIVDLKKVIE 215


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.366 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,869,781
Number of Sequences: 62578
Number of extensions: 143031
Number of successful extensions: 453
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 452
Number of HSP's gapped (non-prelim): 4
length of query: 251
length of database: 14,973,337
effective HSP length: 96
effective length of query: 155
effective length of database: 8,965,849
effective search space: 1389706595
effective search space used: 1389706595
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)