Query 025511
Match_columns 251
No_of_seqs 105 out of 121
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 11:48:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025511.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025511hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wi9_A Protein C20ORF116 homol 100.0 9.2E-35 3.2E-39 219.2 4.3 69 138-206 3-71 (72)
2 3cuo_A Uncharacterized HTH-typ 97.2 0.0018 6.2E-08 46.4 8.2 68 146-213 28-95 (99)
3 1ub9_A Hypothetical protein PH 97.1 0.0032 1.1E-07 45.0 8.7 67 147-213 21-90 (100)
4 1tbx_A ORF F-93, hypothetical 96.4 0.017 5.9E-07 41.9 8.3 67 146-212 12-82 (99)
5 2oqg_A Possible transcriptiona 96.4 0.018 6.1E-07 42.4 8.3 68 146-214 25-92 (114)
6 3jth_A Transcription activator 96.4 0.015 5.2E-07 42.3 7.8 67 146-213 27-93 (98)
7 1xn7_A Hypothetical protein YH 96.3 0.0077 2.6E-07 44.8 5.9 47 143-189 3-49 (78)
8 3tgn_A ADC operon repressor AD 96.3 0.0089 3E-07 45.1 6.2 66 145-211 41-109 (146)
9 2cg4_A Regulatory protein ASNC 96.3 0.016 5.3E-07 45.6 7.8 73 145-217 11-95 (152)
10 2k02_A Ferrous iron transport 96.2 0.0098 3.4E-07 45.5 6.3 47 144-190 4-50 (87)
11 2pn6_A ST1022, 150AA long hypo 96.2 0.013 4.6E-07 45.6 7.2 72 146-217 7-91 (150)
12 2htj_A P fimbrial regulatory p 96.2 0.0086 2.9E-07 42.9 5.6 57 146-202 4-62 (81)
13 3f6o_A Probable transcriptiona 96.2 0.024 8.3E-07 43.1 8.2 68 147-215 23-90 (118)
14 1u2w_A CADC repressor, cadmium 96.1 0.024 8.3E-07 43.6 8.1 67 147-213 47-113 (122)
15 1r1u_A CZRA, repressor protein 96.1 0.028 9.5E-07 41.9 8.2 66 147-213 31-96 (106)
16 2dbb_A Putative HTH-type trans 96.1 0.025 8.5E-07 44.2 8.3 73 145-217 12-95 (151)
17 2kko_A Possible transcriptiona 96.1 0.023 7.8E-07 42.8 7.5 67 147-214 30-96 (108)
18 3oop_A LIN2960 protein; protei 96.0 0.041 1.4E-06 41.5 8.8 67 146-212 41-110 (143)
19 1lj9_A Transcriptional regulat 96.0 0.049 1.7E-06 40.9 9.0 65 146-210 33-100 (144)
20 2hr3_A Probable transcriptiona 96.0 0.055 1.9E-06 40.7 9.3 66 146-211 39-108 (147)
21 2heo_A Z-DNA binding protein 1 95.9 0.015 5E-07 41.2 5.7 50 146-197 14-64 (67)
22 1sfx_A Conserved hypothetical 95.9 0.034 1.2E-06 39.5 7.6 65 146-210 24-90 (109)
23 2jt1_A PEFI protein; solution 95.8 0.02 6.7E-07 42.6 6.2 52 142-193 4-61 (77)
24 3pqk_A Biofilm growth-associat 95.8 0.03 1E-06 41.1 7.2 66 147-213 28-93 (102)
25 2p5v_A Transcriptional regulat 95.8 0.032 1.1E-06 44.3 7.6 73 145-217 13-98 (162)
26 1i1g_A Transcriptional regulat 95.8 0.039 1.3E-06 42.3 7.8 73 146-218 8-91 (141)
27 3s2w_A Transcriptional regulat 95.7 0.068 2.3E-06 41.2 9.0 67 146-212 54-123 (159)
28 3bja_A Transcriptional regulat 95.7 0.043 1.5E-06 40.7 7.5 66 146-211 37-105 (139)
29 2w25_A Probable transcriptiona 95.6 0.017 5.7E-07 45.3 5.3 73 145-217 10-94 (150)
30 2nnn_A Probable transcriptiona 95.6 0.052 1.8E-06 40.3 7.8 65 146-210 42-109 (140)
31 1on2_A Transcriptional regulat 95.6 0.091 3.1E-06 40.1 9.2 66 142-210 8-73 (142)
32 2e1c_A Putative HTH-type trans 95.5 0.035 1.2E-06 45.4 7.1 74 145-218 30-114 (171)
33 3bdd_A Regulatory protein MARR 95.5 0.066 2.3E-06 39.8 8.0 62 146-207 35-99 (142)
34 2eth_A Transcriptional regulat 95.5 0.092 3.2E-06 40.3 9.1 65 146-210 48-115 (154)
35 3cjn_A Transcriptional regulat 95.5 0.092 3.2E-06 40.4 9.1 65 146-210 56-123 (162)
36 2cyy_A Putative HTH-type trans 95.5 0.038 1.3E-06 43.4 7.0 74 145-218 10-94 (151)
37 2fbi_A Probable transcriptiona 95.5 0.056 1.9E-06 40.2 7.6 64 147-210 41-107 (142)
38 2a61_A Transcriptional regulat 95.5 0.054 1.8E-06 40.6 7.5 65 146-210 37-104 (145)
39 2cfx_A HTH-type transcriptiona 95.5 0.068 2.3E-06 41.7 8.3 72 146-217 9-91 (144)
40 2rdp_A Putative transcriptiona 95.5 0.085 2.9E-06 39.8 8.6 66 146-211 46-114 (150)
41 3bro_A Transcriptional regulat 95.4 0.073 2.5E-06 39.6 8.1 65 146-210 38-107 (141)
42 3eco_A MEPR; mutlidrug efflux 95.4 0.1 3.6E-06 38.9 9.0 67 146-212 35-106 (139)
43 3f6v_A Possible transcriptiona 95.4 0.08 2.7E-06 42.8 8.9 69 146-215 62-130 (151)
44 2bv6_A MGRA, HTH-type transcri 95.4 0.061 2.1E-06 40.4 7.6 65 146-210 41-108 (142)
45 3bj6_A Transcriptional regulat 95.4 0.11 3.7E-06 39.3 9.0 65 146-210 44-111 (152)
46 3nrv_A Putative transcriptiona 95.3 0.069 2.4E-06 40.4 7.8 68 146-213 44-114 (148)
47 3k0l_A Repressor protein; heli 95.3 0.077 2.6E-06 41.2 8.2 67 146-212 50-119 (162)
48 2qvo_A Uncharacterized protein 95.3 0.076 2.6E-06 38.7 7.7 57 156-212 30-86 (95)
49 2gxg_A 146AA long hypothetical 95.3 0.12 4.2E-06 38.6 8.9 64 147-211 42-108 (146)
50 1jgs_A Multiple antibiotic res 95.3 0.13 4.4E-06 38.3 9.0 66 147-212 39-107 (138)
51 3g3z_A NMB1585, transcriptiona 95.2 0.098 3.3E-06 39.5 8.2 67 146-212 35-104 (145)
52 1s3j_A YUSO protein; structura 95.2 0.12 4.1E-06 39.2 8.6 65 146-210 41-108 (155)
53 3i4p_A Transcriptional regulat 95.2 0.052 1.8E-06 43.5 6.9 74 145-218 6-93 (162)
54 2fbh_A Transcriptional regulat 95.1 0.1 3.5E-06 38.9 8.0 65 146-210 41-109 (146)
55 3b73_A PHIH1 repressor-like pr 95.1 0.068 2.3E-06 42.0 7.2 60 145-207 16-77 (111)
56 3hsr_A HTH-type transcriptiona 95.0 0.067 2.3E-06 40.5 6.9 66 146-211 40-108 (140)
57 3e6m_A MARR family transcripti 95.0 0.14 4.6E-06 39.7 8.8 67 146-212 57-126 (161)
58 4hbl_A Transcriptional regulat 95.0 0.086 2.9E-06 40.4 7.5 69 146-214 45-116 (149)
59 2frh_A SARA, staphylococcal ac 95.0 0.075 2.6E-06 40.4 7.1 67 146-212 41-112 (127)
60 2fa5_A Transcriptional regulat 95.0 0.086 2.9E-06 40.4 7.5 66 146-211 53-121 (162)
61 3bpv_A Transcriptional regulat 94.9 0.13 4.4E-06 38.1 8.1 65 146-210 33-100 (138)
62 3f3x_A Transcriptional regulat 94.9 0.14 4.7E-06 38.6 8.3 66 146-212 41-109 (144)
63 1q1h_A TFE, transcription fact 94.9 0.055 1.9E-06 40.2 6.0 57 152-208 29-91 (110)
64 3df8_A Possible HXLR family tr 94.9 0.1 3.5E-06 39.6 7.6 64 148-213 33-105 (111)
65 3kp7_A Transcriptional regulat 94.9 0.061 2.1E-06 41.0 6.3 66 146-212 42-112 (151)
66 3ech_A MEXR, multidrug resista 94.9 0.061 2.1E-06 40.6 6.2 67 146-212 41-110 (142)
67 2nyx_A Probable transcriptiona 94.9 0.15 5.2E-06 39.9 8.7 65 146-210 49-116 (168)
68 2pex_A Transcriptional regulat 94.8 0.082 2.8E-06 40.3 6.9 60 147-206 52-114 (153)
69 2ia0_A Putative HTH-type trans 94.8 0.12 4.1E-06 42.1 8.3 74 145-218 20-111 (171)
70 2h09_A Transcriptional regulat 94.8 0.25 8.5E-06 38.3 9.7 66 142-210 40-105 (155)
71 3cdh_A Transcriptional regulat 94.7 0.13 4.5E-06 39.2 7.8 67 146-212 47-116 (155)
72 2qww_A Transcriptional regulat 94.7 0.16 5.4E-06 38.6 8.2 66 146-211 45-115 (154)
73 2jsc_A Transcriptional regulat 94.6 0.08 2.7E-06 40.4 6.4 63 147-210 26-88 (118)
74 1z91_A Organic hydroperoxide r 94.6 0.076 2.6E-06 39.9 6.2 62 146-207 44-108 (147)
75 1r1t_A Transcriptional repress 94.6 0.15 5.3E-06 39.4 8.1 64 148-212 52-115 (122)
76 2lkp_A Transcriptional regulat 94.6 0.17 5.6E-06 37.9 8.0 65 147-212 37-101 (119)
77 3jw4_A Transcriptional regulat 94.6 0.045 1.5E-06 41.6 4.9 67 146-212 45-116 (148)
78 2hzt_A Putative HTH-type trans 94.6 0.21 7.2E-06 37.3 8.5 54 148-202 20-77 (107)
79 2pg4_A Uncharacterized protein 94.6 0.18 6E-06 36.6 7.8 66 147-212 20-88 (95)
80 1ufm_A COP9 complex subunit 4; 94.5 0.09 3.1E-06 39.5 6.3 54 147-200 21-74 (84)
81 3deu_A Transcriptional regulat 94.5 0.15 5.1E-06 40.2 7.9 67 146-212 57-127 (166)
82 3boq_A Transcriptional regulat 94.4 0.09 3.1E-06 40.2 6.2 66 146-211 51-120 (160)
83 2xvc_A ESCRT-III, SSO0910; cel 94.3 0.077 2.6E-06 38.7 5.3 43 145-187 13-56 (59)
84 1qgp_A Protein (double strande 94.3 0.073 2.5E-06 38.9 5.2 53 145-197 17-72 (77)
85 2pjp_A Selenocysteine-specific 94.3 0.19 6.6E-06 38.8 7.9 80 143-227 8-91 (121)
86 4b4t_R RPN7, 26S proteasome re 94.2 0.091 3.1E-06 48.3 6.8 60 143-202 334-393 (429)
87 3nqo_A MARR-family transcripti 94.0 0.3 1E-05 39.4 8.9 66 146-211 45-115 (189)
88 3txn_A 26S proteasome regulato 94.0 0.09 3.1E-06 49.2 6.6 59 144-202 304-362 (394)
89 2d1h_A ST1889, 109AA long hypo 93.9 0.53 1.8E-05 33.3 9.1 63 150-212 30-98 (109)
90 3fm5_A Transcriptional regulat 93.8 0.21 7.1E-06 38.0 7.2 66 147-212 44-113 (150)
91 2fsw_A PG_0823 protein; alpha- 93.4 0.51 1.7E-05 35.1 8.6 55 148-203 31-89 (107)
92 2fxa_A Protease production reg 93.3 0.39 1.3E-05 39.8 8.6 71 147-217 53-126 (207)
93 1z7u_A Hypothetical protein EF 93.3 0.55 1.9E-05 35.2 8.7 56 148-204 28-87 (112)
94 2x4h_A Hypothetical protein SS 93.2 0.56 1.9E-05 35.4 8.7 64 143-210 18-81 (139)
95 3u2r_A Regulatory protein MARR 93.0 0.35 1.2E-05 37.6 7.5 66 147-212 51-121 (168)
96 1qbj_A Protein (double-strande 92.9 0.28 9.5E-06 36.5 6.5 59 144-202 12-73 (81)
97 2zkz_A Transcriptional repress 92.9 0.3 1E-05 36.0 6.6 62 150-212 35-96 (99)
98 2f2e_A PA1607; transcription f 92.4 0.81 2.8E-05 36.2 9.0 56 147-203 29-86 (146)
99 1yyv_A Putative transcriptiona 92.3 0.66 2.2E-05 36.4 8.2 54 149-203 42-99 (131)
100 4b4t_Q 26S proteasome regulato 92.3 0.21 7.3E-06 42.2 5.7 73 145-217 345-422 (434)
101 1j5y_A Transcriptional regulat 92.3 0.56 1.9E-05 38.4 8.1 46 143-188 22-69 (187)
102 1oyi_A Double-stranded RNA-bin 92.1 0.21 7.2E-06 37.9 5.0 50 139-189 14-63 (82)
103 2b0l_A GTP-sensing transcripti 92.0 0.34 1.1E-05 36.9 6.1 54 155-208 42-97 (102)
104 1xmk_A Double-stranded RNA-spe 91.6 0.44 1.5E-05 35.6 6.2 58 142-201 11-70 (79)
105 1lva_A Selenocysteine-specific 91.5 1.1 3.6E-05 38.8 9.4 83 141-227 140-227 (258)
106 3r0a_A Putative transcriptiona 91.1 0.71 2.4E-05 35.5 7.1 66 146-212 30-101 (123)
107 4aik_A Transcriptional regulat 91.0 1.2 4.1E-05 34.8 8.4 64 147-210 36-103 (151)
108 2fbk_A Transcriptional regulat 90.7 0.25 8.7E-06 39.1 4.3 65 147-211 74-144 (181)
109 4b8x_A SCO5413, possible MARR- 90.6 0.9 3.1E-05 35.2 7.3 63 148-210 41-108 (147)
110 3lmm_A Uncharacterized protein 90.0 0.46 1.6E-05 46.3 6.3 83 145-227 433-541 (583)
111 2wte_A CSA3; antiviral protein 89.7 0.85 2.9E-05 39.7 7.2 58 146-205 156-213 (244)
112 1ku9_A Hypothetical protein MJ 89.6 1.3 4.5E-05 32.7 7.3 46 154-199 39-87 (152)
113 3tqn_A Transcriptional regulat 89.1 2.8 9.7E-05 31.7 8.9 64 142-208 13-82 (113)
114 2v79_A DNA replication protein 88.9 0.75 2.6E-05 36.8 5.8 60 154-214 49-113 (135)
115 1bia_A BIRA bifunctional prote 88.8 0.81 2.8E-05 40.8 6.5 45 143-187 6-50 (321)
116 1y0u_A Arsenical resistance op 88.7 0.88 3E-05 32.9 5.6 51 146-202 35-85 (96)
117 3hrs_A Metalloregulator SCAR; 87.6 1.7 5.7E-05 36.4 7.4 66 144-212 8-73 (214)
118 1uly_A Hypothetical protein PH 87.6 2.6 8.9E-05 35.1 8.5 67 146-213 24-106 (192)
119 1p4x_A Staphylococcal accessor 87.3 2.5 8.4E-05 36.7 8.5 65 147-211 163-232 (250)
120 4ev0_A Transcription regulator 86.9 0.63 2.2E-05 36.5 4.1 52 157-211 164-215 (216)
121 2fu4_A Ferric uptake regulatio 86.3 1.7 5.9E-05 30.4 5.8 54 145-198 20-80 (83)
122 1okr_A MECI, methicillin resis 86.1 2.2 7.4E-05 31.4 6.5 60 146-205 14-78 (123)
123 3k2z_A LEXA repressor; winged 85.9 1.2 4.2E-05 36.4 5.6 46 144-189 11-57 (196)
124 3iuo_A ATP-dependent DNA helic 85.0 1.2 4E-05 35.0 4.8 69 155-227 31-101 (122)
125 3mn2_A Probable ARAC family tr 85.0 2.1 7.3E-05 31.2 6.0 76 142-227 2-80 (108)
126 2p5k_A Arginine repressor; DNA 84.6 3.4 0.00012 27.3 6.4 49 146-198 9-62 (64)
127 4a5n_A Uncharacterized HTH-typ 84.5 4.1 0.00014 32.4 7.8 61 154-214 37-107 (131)
128 3oou_A LIN2118 protein; protei 84.4 2.4 8.3E-05 31.0 6.1 76 141-227 4-81 (108)
129 3dv8_A Transcriptional regulat 84.0 2 6.7E-05 33.7 5.7 50 157-209 170-219 (220)
130 3tdu_C Cullin-1, CUL-1; E2:E3, 84.0 0.72 2.5E-05 34.4 3.0 55 146-200 15-77 (77)
131 1sfu_A 34L protein; protein/Z- 83.5 1.6 5.4E-05 32.9 4.7 52 139-190 12-63 (75)
132 1b4a_A Arginine repressor; hel 83.4 2.5 8.6E-05 34.7 6.3 58 142-203 5-67 (149)
133 3u5c_Z RP45, S31, YS23, 40S ri 82.9 1.8 6E-05 34.7 5.0 60 141-200 44-103 (108)
134 4b4t_O 26S proteasome regulato 82.2 1.6 5.3E-05 40.0 5.1 75 153-238 304-379 (393)
135 2dk8_A DNA-directed RNA polyme 82.1 2.2 7.7E-05 32.3 5.1 58 140-198 12-71 (81)
136 3cuq_B Vacuolar protein-sortin 81.8 2.1 7.1E-05 37.1 5.5 111 115-227 47-179 (218)
137 1hsj_A Fusion protein consisti 81.7 3.7 0.00013 37.0 7.3 66 147-212 409-479 (487)
138 4fx0_A Probable transcriptiona 81.7 2.3 7.9E-05 33.1 5.2 55 156-211 52-109 (148)
139 2do7_A Cullin-4B, CUL-4B; heli 81.5 4.1 0.00014 31.8 6.6 55 146-200 35-95 (101)
140 1iuy_A Cullin-3 homologue; win 81.5 5.8 0.0002 30.3 7.3 56 145-200 29-92 (92)
141 3mkl_A HTH-type transcriptiona 81.5 8.9 0.0003 28.5 8.3 76 140-227 5-82 (120)
142 3iz6_V 40S ribosomal protein S 81.4 1.6 5.4E-05 34.9 4.2 60 141-200 45-104 (108)
143 1mkm_A ICLR transcriptional re 81.3 8.7 0.0003 32.4 9.1 87 146-235 12-104 (249)
144 2ba3_A NIKA; dimer, bacterial 81.2 1.8 6E-05 28.8 3.8 30 196-226 19-48 (51)
145 3by6_A Predicted transcription 81.2 7.1 0.00024 30.2 7.9 60 143-203 16-81 (126)
146 2k9s_A Arabinose operon regula 81.2 5.8 0.0002 28.9 7.0 75 142-227 3-80 (107)
147 3neu_A LIN1836 protein; struct 81.0 8.2 0.00028 29.6 8.1 55 143-198 18-78 (125)
148 2co5_A Viral protein F93; vira 80.8 6.8 0.00023 29.8 7.5 57 158-214 30-88 (99)
149 3cta_A Riboflavin kinase; stru 80.8 4.9 0.00017 33.4 7.3 53 157-209 28-80 (230)
150 2xzm_8 RPS25E,; ribosome, tran 80.6 2 7E-05 35.9 4.8 60 141-200 47-107 (143)
151 1p6r_A Penicillinase repressor 80.5 4.5 0.00015 28.2 6.0 54 145-199 12-69 (82)
152 4b4t_P 26S proteasome regulato 80.3 2.5 8.6E-05 39.1 5.8 54 148-201 351-404 (445)
153 3d0s_A Transcriptional regulat 79.9 3.1 0.0001 33.0 5.5 49 157-208 178-226 (227)
154 3o2p_E Cell division control p 79.4 1.7 5.8E-05 33.2 3.6 55 145-200 26-88 (88)
155 1ft9_A Carbon monoxide oxidati 79.3 2.5 8.4E-05 33.6 4.8 50 157-209 164-214 (222)
156 3l7w_A Putative uncharacterize 78.6 6.7 0.00023 29.3 6.8 54 161-214 31-88 (108)
157 2qq9_A Diphtheria toxin repres 78.4 11 0.00036 31.6 8.6 52 158-212 26-77 (226)
158 3e6c_C CPRK, cyclic nucleotide 78.4 3 0.0001 33.9 5.1 52 156-210 177-228 (250)
159 2zcw_A TTHA1359, transcription 78.4 3.7 0.00013 32.1 5.5 50 157-209 147-196 (202)
160 3lsg_A Two-component response 77.4 8.5 0.00029 27.7 6.8 75 142-227 2-79 (103)
161 1bl0_A Protein (multiple antib 76.9 7.8 0.00027 29.3 6.8 77 139-226 8-86 (129)
162 2y75_A HTH-type transcriptiona 76.6 5.5 0.00019 30.1 5.9 57 147-203 14-74 (129)
163 1fx7_A Iron-dependent represso 76.6 9 0.00031 32.0 7.7 64 146-212 13-77 (230)
164 2v7f_A RPS19, RPS19E SSU ribos 76.4 2.2 7.5E-05 35.1 3.8 61 151-213 63-138 (150)
165 2k9i_A Plasmid PRN1, complete 76.1 3.2 0.00011 27.1 3.8 29 197-226 14-42 (55)
166 2g9w_A Conserved hypothetical 75.9 13 0.00045 28.4 7.9 59 146-204 13-78 (138)
167 2vn2_A DNAD, chromosome replic 75.9 4.4 0.00015 31.4 5.2 35 157-191 52-86 (128)
168 1pdn_C Protein (PRD paired); p 75.7 6 0.0002 28.4 5.6 83 141-226 20-103 (128)
169 3fx3_A Cyclic nucleotide-bindi 75.1 4.9 0.00017 32.0 5.4 48 159-210 181-228 (237)
170 1xn7_A Hypothetical protein YH 75.1 2.3 7.9E-05 31.3 3.2 24 204-227 4-27 (78)
171 2qc0_A Uncharacterized protein 75.1 8.3 0.00029 35.0 7.6 62 145-207 300-361 (373)
172 3chm_A COP9 signalosome comple 74.9 7 0.00024 32.5 6.5 58 143-200 96-155 (169)
173 1p4x_A Staphylococcal accessor 74.9 8 0.00027 33.4 7.1 65 147-211 39-108 (250)
174 3b02_A Transcriptional regulat 74.6 4.8 0.00016 31.3 5.2 49 157-208 140-188 (195)
175 2gau_A Transcriptional regulat 74.6 6 0.00021 31.4 5.8 50 157-209 181-230 (232)
176 3e97_A Transcriptional regulat 74.6 3.8 0.00013 32.6 4.6 50 157-209 176-225 (231)
177 1sd4_A Penicillinase repressor 74.5 13 0.00044 27.3 7.3 52 146-198 14-69 (126)
178 1stz_A Heat-inducible transcri 74.3 4.7 0.00016 36.6 5.7 45 143-187 22-69 (338)
179 2bgc_A PRFA; bacterial infecti 74.3 5.3 0.00018 32.2 5.5 51 157-211 170-222 (238)
180 2gqq_A Leucine-responsive regu 74.2 1 3.5E-05 35.7 1.2 72 145-216 16-101 (163)
181 2ek5_A Predicted transcription 74.1 16 0.00053 28.5 8.0 57 144-203 10-72 (129)
182 2fmy_A COOA, carbon monoxide o 71.7 6.7 0.00023 30.9 5.4 49 157-208 168-217 (220)
183 3ihu_A Transcriptional regulat 71.2 7.9 0.00027 31.7 5.9 53 157-210 40-93 (222)
184 3ic7_A Putative transcriptiona 70.1 9.4 0.00032 29.4 5.8 69 141-212 14-88 (126)
185 2hs5_A Putative transcriptiona 69.9 7.1 0.00024 32.8 5.5 52 155-208 51-103 (239)
186 3i71_A Ethanolamine utilizatio 68.4 4.4 0.00015 29.9 3.3 34 154-187 16-49 (68)
187 4ham_A LMO2241 protein; struct 68.3 5.3 0.00018 30.8 4.1 52 145-197 21-78 (134)
188 2k02_A Ferrous iron transport 67.9 2.9 9.9E-05 31.7 2.4 24 204-227 4-27 (87)
189 2vz4_A Tipal, HTH-type transcr 67.8 21 0.00072 26.7 7.2 65 158-227 3-69 (108)
190 1v4r_A Transcriptional repress 67.8 3.7 0.00012 30.1 2.9 40 158-198 37-76 (102)
191 2lyc_A Spindle and kinetochore 67.7 1.2 4E-05 36.5 0.1 29 198-228 9-37 (130)
192 3oio_A Transcriptional regulat 67.6 8.7 0.0003 28.2 5.0 77 140-227 5-83 (113)
193 3bwg_A Uncharacterized HTH-typ 66.7 14 0.00047 31.1 6.7 54 143-197 10-69 (239)
194 1k78_A Paired box protein PAX5 66.6 31 0.001 26.2 8.1 81 141-226 35-118 (149)
195 3cuq_B Vacuolar protein-sortin 66.1 16 0.00055 31.4 7.0 55 143-199 155-211 (218)
196 2wv0_A YVOA, HTH-type transcri 65.9 15 0.0005 31.2 6.7 54 143-197 15-74 (243)
197 2di3_A Bacterial regulatory pr 64.7 13 0.00045 30.8 6.0 55 144-198 10-73 (239)
198 3rkx_A Biotin-[acetyl-COA-carb 64.6 18 0.00063 32.4 7.4 40 146-185 7-48 (323)
199 3f8m_A GNTR-family protein tra 64.2 7.9 0.00027 33.0 4.7 42 155-198 35-76 (248)
200 1o57_A PUR operon repressor; p 64.1 33 0.0011 30.3 8.9 82 141-222 6-102 (291)
201 4a0z_A Transcription factor FA 63.7 9.3 0.00032 32.0 5.0 42 143-184 13-54 (190)
202 2v9v_A Selenocysteine-specific 63.6 44 0.0015 25.0 8.4 79 147-226 7-97 (135)
203 3eff_K Voltage-gated potassium 63.5 22 0.00075 27.5 6.8 43 23-66 56-98 (139)
204 1yg2_A Gene activator APHA; vi 63.4 15 0.00052 29.5 6.1 63 155-217 14-89 (179)
205 2rnn_A E3 SUMO-protein ligase 63.1 17 0.00058 29.2 6.1 65 142-215 28-96 (114)
206 2hye_C Cullin-4A, CUL-4A; beta 62.8 9.8 0.00033 37.9 5.7 55 146-200 699-759 (759)
207 2cpg_A REPA protein, transcrip 62.8 8.9 0.0003 24.1 3.7 29 197-226 7-35 (45)
208 1xma_A Predicted transcription 62.8 56 0.0019 25.9 9.2 72 155-231 53-137 (145)
209 2dk5_A DNA-directed RNA polyme 62.7 19 0.00065 26.9 6.1 54 146-199 24-82 (91)
210 2p4w_A Transcriptional regulat 62.5 16 0.00056 30.6 6.3 44 148-192 21-64 (202)
211 2vlg_A Sporulation kinase A; h 62.4 4 0.00014 30.1 2.2 23 180-202 5-27 (111)
212 1hw1_A FADR, fatty acid metabo 62.4 6.3 0.00022 32.3 3.6 53 144-197 13-71 (239)
213 2qlz_A Transcription factor PF 61.0 6.5 0.00022 34.1 3.6 55 147-202 17-77 (232)
214 1cf7_A Protein (transcription 61.0 17 0.00057 26.8 5.4 57 141-199 13-72 (76)
215 2esh_A Conserved hypothetical 60.4 46 0.0016 25.0 8.0 59 155-213 25-96 (118)
216 1bja_A Transcription regulator 60.1 41 0.0014 25.9 7.6 58 148-209 22-80 (95)
217 1q06_A Transcriptional regulat 59.9 36 0.0012 26.6 7.5 64 158-226 2-67 (135)
218 2vxz_A Pyrsv_GP04; viral prote 59.3 51 0.0018 28.1 8.7 70 142-212 11-81 (165)
219 3dpl_C Cullin-5; ubiquitin, NE 58.6 8.5 0.00029 35.3 4.1 54 147-200 321-382 (382)
220 1r7j_A Conserved hypothetical 58.4 53 0.0018 24.2 8.2 60 143-208 9-68 (95)
221 2kvc_A Putative uncharacterize 57.9 5 0.00017 31.8 2.1 44 199-242 39-82 (103)
222 1d5y_A ROB transcription facto 57.7 21 0.00073 29.6 6.1 75 141-226 2-78 (292)
223 2jml_A DNA binding domain/tran 57.4 28 0.00097 24.6 6.0 66 156-226 5-74 (81)
224 4f3l_A Mclock, circadian locom 57.4 17 0.00057 32.2 5.7 79 114-201 28-113 (361)
225 3c7j_A Transcriptional regulat 56.9 24 0.0008 29.7 6.3 42 154-197 48-89 (237)
226 1u78_A TC3 transposase, transp 56.8 39 0.0013 24.8 6.9 76 145-227 13-88 (141)
227 1z05_A Transcriptional regulat 56.7 16 0.00056 33.0 5.6 44 145-188 42-85 (429)
228 1ldj_A Cullin homolog 1, CUL-1 55.7 19 0.00065 35.9 6.4 55 146-200 698-760 (760)
229 3la7_A Global nitrogen regulat 55.6 13 0.00043 30.2 4.3 46 157-205 194-239 (243)
230 3edp_A LIN2111 protein; APC883 55.3 27 0.00091 29.5 6.4 56 143-201 14-75 (236)
231 3ri2_A Transcriptional regulat 55.2 37 0.0013 26.4 6.8 64 166-234 48-115 (123)
232 1z6r_A MLC protein; transcript 54.2 17 0.00058 32.4 5.2 44 145-188 19-62 (406)
233 3eqx_A FIC domain containing t 53.7 39 0.0013 30.9 7.7 60 146-206 301-360 (373)
234 3gbg_A TCP pilus virulence reg 53.5 57 0.0019 26.9 8.0 76 140-227 167-244 (276)
235 1r8d_A Transcription activator 53.4 46 0.0016 24.8 6.8 65 157-226 3-69 (109)
236 2w48_A Sorbitol operon regulat 53.3 27 0.00092 30.4 6.3 44 144-187 9-52 (315)
237 3sxy_A Transcriptional regulat 52.2 21 0.00071 29.1 5.1 53 154-208 34-87 (218)
238 2lky_A Uncharacterized protein 51.4 5.6 0.00019 32.0 1.5 44 199-242 41-84 (112)
239 3dkw_A DNR protein; CRP-FNR, H 51.2 6.8 0.00023 30.8 1.9 40 157-200 179-218 (227)
240 2o0y_A Transcriptional regulat 51.1 60 0.002 27.5 8.0 86 146-234 27-118 (260)
241 2dql_A PEX protein; circadian 50.9 38 0.0013 25.7 6.1 49 165-213 51-105 (115)
242 1a62_A RHO; transcription term 50.8 22 0.00076 28.4 4.9 56 150-205 5-87 (130)
243 4esf_A PADR-like transcription 49.8 83 0.0028 23.9 9.4 71 155-230 23-104 (117)
244 2hoe_A N-acetylglucosamine kin 49.8 18 0.00061 32.2 4.6 41 147-188 25-65 (380)
245 2zhg_A Redox-sensitive transcr 49.7 50 0.0017 26.5 6.9 68 154-227 9-78 (154)
246 2xrn_A HTH-type transcriptiona 49.5 33 0.0011 28.8 6.1 88 146-236 10-102 (241)
247 2oz6_A Virulence factor regula 48.3 21 0.00072 27.5 4.3 40 157-200 165-204 (207)
248 4esb_A Transcriptional regulat 48.1 51 0.0017 25.0 6.4 73 157-234 23-106 (115)
249 1f5n_A Interferon-induced guan 47.9 2.1E+02 0.0072 28.0 12.5 38 2-39 425-462 (592)
250 3t8r_A Staphylococcus aureus C 47.6 32 0.0011 27.0 5.3 44 155-198 27-70 (143)
251 2o0m_A Transcriptional regulat 46.5 4.2 0.00014 36.3 0.0 54 145-203 23-77 (345)
252 3t5x_A PCI domain-containing p 45.8 28 0.00095 29.1 5.0 48 154-201 139-192 (203)
253 2p8t_A Hypothetical protein PH 45.5 46 0.0016 28.7 6.4 58 154-215 28-85 (200)
254 3ryp_A Catabolite gene activat 45.3 17 0.00059 28.0 3.4 40 157-200 168-207 (210)
255 1ylf_A RRF2 family protein; st 45.2 25 0.00087 27.5 4.4 44 154-198 28-71 (149)
256 2k4b_A Transcriptional regulat 44.5 66 0.0023 24.1 6.5 52 147-199 40-95 (99)
257 3iwz_A CAP-like, catabolite ac 43.8 26 0.00088 27.4 4.3 31 157-187 188-218 (230)
258 2k5j_A Uncharacterized protein 43.4 25 0.00085 25.6 3.8 31 195-226 12-42 (80)
259 1gks_A Cytochrome C551; haloph 43.4 13 0.00043 25.6 2.1 25 188-214 53-77 (78)
260 3to7_A Histone acetyltransfera 42.4 54 0.0018 29.9 6.6 59 154-219 206-265 (276)
261 2g7u_A Transcriptional regulat 42.3 26 0.0009 29.6 4.4 85 146-234 18-108 (257)
262 4f3l_B BMAL1B; BHLH, PAS, circ 42.3 66 0.0023 28.8 7.2 84 114-202 29-115 (387)
263 3rjp_A COVR; winged helix-turn 42.1 31 0.0011 24.5 4.2 35 192-226 16-51 (96)
264 2k27_A Paired box protein PAX- 42.0 40 0.0014 26.0 5.0 81 141-227 28-112 (159)
265 3elk_A Putative transcriptiona 42.0 62 0.0021 24.6 6.1 57 157-213 28-95 (117)
266 3hh0_A Transcriptional regulat 39.6 1.1E+02 0.0039 24.1 7.5 68 155-227 3-72 (146)
267 1zyb_A Transcription regulator 38.9 29 0.001 27.6 3.9 40 157-200 187-226 (232)
268 1lva_A Selenocysteine-specific 38.6 1.3E+02 0.0044 25.7 8.2 78 147-226 7-97 (258)
269 3eet_A Putative GNTR-family tr 37.8 58 0.002 28.1 5.9 54 143-197 34-93 (272)
270 3rvy_A ION transport protein; 37.7 18 0.00062 30.7 2.6 31 37-67 214-245 (285)
271 3hhh_A Transcriptional regulat 37.7 1E+02 0.0035 23.4 6.7 57 157-213 27-94 (116)
272 2o03_A Probable zinc uptake re 37.6 1.2E+02 0.0039 23.1 7.0 52 147-198 16-73 (131)
273 3kcc_A Catabolite gene activat 37.5 36 0.0012 27.9 4.4 40 157-200 218-257 (260)
274 2zxy_A Cytochrome C552, cytoch 37.5 17 0.00057 24.5 1.9 16 198-213 70-85 (87)
275 3r4k_A Transcriptional regulat 36.7 35 0.0012 29.0 4.3 86 147-235 11-103 (260)
276 3cu4_A Cytochrome C family pro 36.7 17 0.0006 24.7 2.0 16 199-214 68-83 (85)
277 1r8e_A Multidrug-efflux transp 36.5 74 0.0025 26.5 6.2 69 154-227 3-74 (278)
278 3dr0_A Cytochrome C6; photosyn 36.5 20 0.00067 24.3 2.2 16 199-214 72-87 (93)
279 1c53_A Cytochrome C553; electr 36.3 18 0.0006 24.6 1.9 16 198-213 63-78 (79)
280 1ayg_A Cytochrome C-552; elect 36.3 19 0.00065 24.4 2.1 17 198-214 63-79 (80)
281 3zq7_A KDP operon transcriptio 36.2 31 0.0011 24.8 3.4 35 192-226 22-57 (102)
282 3sqn_A Conserved domain protei 36.1 93 0.0032 29.2 7.4 83 144-226 20-118 (485)
283 3dmi_A Cytochrome C6; electron 35.6 19 0.00064 24.4 2.0 39 168-214 44-82 (88)
284 1u5t_A Appears to BE functiona 35.3 19 0.00065 31.8 2.4 70 155-225 112-190 (233)
285 2hgc_A YJCQ protein; SR346, st 35.3 40 0.0014 26.3 4.0 52 163-219 23-81 (102)
286 2xub_A DNA-directed RNA polyme 35.1 2.2E+02 0.0074 27.1 9.8 84 144-227 21-126 (534)
287 1kx2_A Mono-heme C-type cytoch 35.1 15 0.0005 25.4 1.4 16 198-213 64-79 (81)
288 1nd9_A Translation initiation 35.1 28 0.00097 21.9 2.7 23 158-180 4-26 (49)
289 2q2f_A Selenoprotein S; anti-p 34.4 1.5E+02 0.005 23.1 7.0 12 69-80 49-60 (89)
290 1gdv_A Cytochrome C6; RED ALGA 34.2 21 0.0007 24.0 2.0 25 188-214 56-80 (85)
291 3mq0_A Transcriptional repress 34.2 48 0.0017 28.5 4.8 86 146-234 34-125 (275)
292 1c75_A Cytochrome C-553; heme, 34.1 19 0.00066 23.9 1.8 17 198-214 54-70 (71)
293 2ia2_A Putative transcriptiona 34.0 31 0.0011 29.4 3.5 85 146-234 25-115 (265)
294 2zon_G Cytochrome C551; nitrit 33.9 22 0.00077 24.3 2.2 17 198-214 69-85 (87)
295 3ph2_B Cytochrome C6; photosyn 33.0 22 0.00075 23.9 2.0 16 199-214 66-81 (86)
296 1f1f_A Cytochrome C6; heme, pr 32.9 22 0.00075 24.1 2.0 17 198-214 68-84 (89)
297 3lwf_A LIN1550 protein, putati 32.7 64 0.0022 26.1 5.0 45 154-198 42-86 (159)
298 3t76_A VANU, transcriptional r 32.3 68 0.0023 23.3 4.7 55 147-223 29-83 (88)
299 2qlz_A Transcription factor PF 32.2 1.4E+02 0.0046 25.7 7.3 56 145-203 167-222 (232)
300 1ls9_A Cytochrome C6; omega lo 32.2 23 0.00078 24.4 2.0 40 167-214 46-85 (91)
301 2fe3_A Peroxide operon regulat 32.1 1.4E+02 0.0047 23.2 6.7 75 147-235 27-108 (145)
302 2exv_A Cytochrome C-551; alpha 31.8 23 0.0008 23.8 1.9 16 198-213 65-80 (82)
303 1cch_A Cytochrome C551; electr 31.6 25 0.00087 23.5 2.1 16 198-213 65-80 (82)
304 1cc5_A Cytochrome C5; electron 31.5 22 0.00075 25.0 1.8 16 198-213 67-82 (83)
305 1tc3_C Protein (TC3 transposas 31.5 57 0.002 19.1 3.6 37 146-184 13-49 (51)
306 3cuq_A Vacuolar-sorting protei 31.4 88 0.003 27.6 6.0 72 154-225 92-177 (234)
307 3obv_E Protein diaphanous homo 31.4 1.2E+02 0.004 28.7 7.3 10 144-153 430-439 (457)
308 1a56_A C-551, ferricytochrome 31.4 20 0.00067 24.3 1.5 16 198-213 64-79 (81)
309 3f2g_A Alkylmercury lyase; MER 31.3 48 0.0016 29.0 4.3 49 142-195 22-70 (220)
310 3k6e_A CBS domain protein; str 31.1 16 0.00053 28.3 1.1 32 182-230 113-144 (156)
311 1c6r_A Cytochrome C6; electron 31.0 25 0.00084 23.9 2.0 16 199-214 68-83 (89)
312 3dp5_A OMCF, cytochrome C fami 30.7 22 0.00077 25.6 1.8 15 199-213 82-96 (99)
313 1cyi_A Cytochrome C6, cytochro 30.4 25 0.00087 24.0 2.0 16 199-214 67-82 (90)
314 2d0s_A Cytochrome C, cytochrom 30.3 19 0.00065 24.3 1.3 16 198-213 62-77 (79)
315 3akb_A Putative calcium bindin 30.2 1.4E+02 0.0048 21.4 6.2 33 199-231 129-163 (166)
316 3f52_A CLP gene regulator (CLG 30.1 1.1E+02 0.0036 22.2 5.5 73 143-235 28-100 (117)
317 1g8i_A Frequenin, neuronal cal 30.1 91 0.0031 23.3 5.2 24 159-182 13-36 (190)
318 3qq6_A HTH-type transcriptiona 30.0 1.2E+02 0.004 20.7 5.4 62 145-225 12-73 (78)
319 1wve_C 4-cresol dehydrogenase 29.9 30 0.001 23.7 2.3 18 198-215 57-74 (80)
320 3v4g_A Arginine repressor; vib 29.8 1.5E+02 0.0051 25.2 7.0 62 140-204 31-97 (180)
321 2ou2_A Histone acetyltransfera 29.7 29 0.001 31.7 2.8 48 156-209 212-260 (280)
322 1u5t_B Defective in vacuolar p 29.7 62 0.0021 26.8 4.5 46 145-192 102-154 (169)
323 1w7p_D VPS36P, YLR417W; ESCRT- 29.6 79 0.0027 31.3 6.0 56 142-199 494-558 (566)
324 2l0k_A Stage III sporulation p 29.3 51 0.0018 24.8 3.7 52 142-210 7-59 (93)
325 4b6a_O 60S ribosomal protein L 29.2 34 0.0011 29.7 2.9 27 153-179 132-158 (199)
326 3o18_A C-phycocyanin alpha sub 28.7 14 0.00047 30.6 0.4 39 191-231 13-53 (162)
327 3pjs_K KCSA, voltage-gated pot 28.5 1E+02 0.0036 24.5 5.6 42 23-65 83-124 (166)
328 2ce0_A Cytochrome C6; chloropl 28.4 32 0.0011 24.1 2.2 17 198-214 78-94 (105)
329 1cno_A Cytochrome C552; electr 28.2 35 0.0012 23.4 2.4 17 199-215 67-83 (87)
330 2jt1_A PEFI protein; solution 28.1 31 0.0011 25.1 2.2 25 203-227 5-35 (77)
331 3lap_A Arginine repressor; arg 28.0 80 0.0027 26.4 5.0 58 142-204 20-84 (170)
332 2pmu_A Response regulator PHOP 28.0 57 0.002 24.0 3.7 34 193-226 29-63 (110)
333 3f8b_A Transcriptional regulat 27.6 1.9E+02 0.0066 21.6 9.5 50 166-215 43-97 (116)
334 2ra5_A Putative transcriptiona 27.5 14 0.00048 31.3 0.2 42 155-197 39-80 (247)
335 3ol3_A Putative uncharacterize 27.5 45 0.0016 26.5 3.2 43 199-241 44-90 (107)
336 1yj7_A ESCJ; mixed alpha/beta, 27.4 1.1E+02 0.0038 25.3 5.7 49 167-215 8-58 (171)
337 2zxj_A Transcriptional regulat 27.2 43 0.0015 25.9 3.0 34 193-226 31-65 (120)
338 2pi2_A Replication protein A 3 27.0 13 0.00046 32.4 0.0 50 144-193 209-262 (270)
339 1y6u_A XIS, excisionase from t 26.9 1.1E+02 0.0039 21.7 5.0 49 152-206 12-62 (70)
340 2do1_A Nuclear protein HCC-1; 26.8 36 0.0012 23.9 2.2 34 151-184 10-47 (55)
341 2k4j_A Putative transcriptiona 26.8 58 0.002 24.5 3.6 34 193-226 36-70 (115)
342 3u1d_A Uncharacterized protein 26.8 2.6E+02 0.009 22.9 8.9 64 147-210 34-108 (151)
343 2obp_A Putative DNA-binding pr 26.6 1.7E+02 0.0057 22.2 6.2 56 155-211 35-92 (96)
344 2q2f_A Selenoprotein S; anti-p 26.5 1.6E+02 0.0054 22.8 6.0 15 76-90 45-59 (89)
345 2b5a_A C.BCLI; helix-turn-heli 26.4 1.4E+02 0.0047 19.4 6.0 61 144-224 11-71 (77)
346 1mzb_A Ferric uptake regulatio 26.2 1.5E+02 0.0052 22.6 6.0 53 147-199 23-82 (136)
347 3eff_K Voltage-gated potassium 26.1 2.2E+02 0.0074 21.7 7.4 25 41-65 69-93 (139)
348 2z9m_A Response regulator YYCF 26.1 45 0.0015 24.9 2.8 34 193-226 31-65 (120)
349 3kdg_A DNA mismatch repair pro 26.0 2.3E+02 0.0078 23.2 7.4 68 140-207 111-192 (197)
350 2d1h_A ST1889, 109AA long hypo 26.0 55 0.0019 22.6 3.1 28 199-226 19-46 (109)
351 4a17_I RPL13A, 60S ribosomal p 25.9 44 0.0015 28.9 3.1 27 153-179 131-157 (198)
352 2xig_A Ferric uptake regulatio 25.9 2.3E+02 0.0079 22.1 7.1 53 147-199 32-90 (150)
353 3omt_A Uncharacterized protein 25.4 89 0.0031 20.5 4.0 51 153-223 18-68 (73)
354 1y7y_A C.AHDI; helix-turn-heli 25.4 1.3E+02 0.0045 19.3 4.8 53 144-212 14-66 (74)
355 3iz5_K 60S ribosomal protein L 25.3 45 0.0016 29.1 3.0 27 153-179 137-163 (206)
356 2l4d_A SCO1/SENC family protei 25.2 37 0.0013 23.9 2.1 16 199-214 81-96 (110)
357 2o3f_A Putative HTH-type trans 25.2 40 0.0014 25.5 2.4 29 199-228 19-51 (111)
358 1w2l_A Cytochrome oxidase subu 24.9 36 0.0012 23.5 1.9 15 199-213 83-97 (99)
359 2m0n_A Putative uncharacterize 24.6 38 0.0013 27.2 2.2 44 199-242 41-91 (112)
360 3olo_A Two-component sensor hi 24.3 61 0.0021 21.1 3.0 20 183-202 22-41 (118)
361 2kvu_A MKL/myocardin-like prot 24.3 52 0.0018 24.7 2.8 34 151-184 26-63 (75)
362 2k9q_A Uncharacterized protein 24.2 1.4E+02 0.0047 19.9 4.8 60 148-227 7-66 (77)
363 1opc_A OMPR, OMPRC; transcript 24.2 62 0.0021 23.6 3.2 34 193-226 26-60 (110)
364 2jzy_A Transcriptional regulat 24.1 58 0.002 24.2 3.1 34 193-226 23-57 (112)
365 3f1p_B ARYL hydrocarbon recept 24.0 20 0.00068 24.5 0.4 18 185-202 13-30 (121)
366 3gpv_A Transcriptional regulat 23.8 2.7E+02 0.0091 21.9 7.8 67 156-227 16-84 (148)
367 1qbj_A Protein (double-strande 23.7 44 0.0015 24.4 2.3 31 197-227 5-38 (81)
368 2zzs_A Cytochrome C554; C-type 23.7 41 0.0014 23.7 2.1 15 199-213 87-101 (103)
369 2dg6_A Putative transcriptiona 23.7 97 0.0033 26.5 4.8 66 158-227 2-69 (222)
370 2hwv_A DNA-binding response re 23.6 1.1E+02 0.0037 23.2 4.6 34 193-226 38-72 (121)
371 2hqn_A Putative transcriptiona 23.5 51 0.0018 24.0 2.7 34 193-226 24-58 (109)
372 3vcf_A Probable integrase; cat 23.5 1.2E+02 0.0039 25.5 5.1 88 141-234 9-121 (163)
373 3gp4_A Transcriptional regulat 23.3 1.7E+02 0.0056 23.1 5.8 65 157-226 3-69 (142)
374 3k69_A Putative transcription 23.3 64 0.0022 25.9 3.4 46 154-199 26-71 (162)
375 2vml_A Phycocyanin alpha chain 22.9 12 0.00042 30.9 -1.0 39 191-231 13-53 (162)
376 1ij5_A Plasmodial specific LAV 22.5 1.5E+02 0.0052 25.7 5.9 9 199-207 139-147 (323)
377 1h1j_S THO1 protein; SAP domai 22.5 59 0.002 22.4 2.6 31 152-182 6-40 (51)
378 1jhf_A LEXA repressor; LEXA SO 21.8 1.8E+02 0.0061 23.1 5.8 42 145-186 13-56 (202)
379 3eyy_A Putative iron uptake re 21.6 2.1E+02 0.0073 22.1 6.1 53 147-199 24-81 (145)
380 1mz4_A Cytochrome C550; PSII a 21.6 46 0.0016 25.0 2.1 16 199-214 107-122 (137)
381 1ucr_A Protein DSVD; dissimila 21.5 1.3E+02 0.0043 22.8 4.5 42 145-186 6-52 (78)
382 3l9f_A Putative uncharacterize 21.4 1.4E+02 0.0047 25.1 5.2 49 167-215 68-121 (204)
383 3dgp_A RNA polymerase II trans 21.4 51 0.0018 24.8 2.3 24 191-214 52-75 (80)
384 3a0s_A Sensor protein; PAS-fol 21.4 55 0.0019 19.8 2.1 15 189-203 7-21 (96)
385 2ciw_A Chloroperoxidase; oxido 21.3 18 0.00061 33.2 -0.3 34 203-236 32-68 (299)
386 2xi8_A Putative transcription 21.1 1.6E+02 0.0055 18.3 5.5 52 152-223 10-61 (66)
387 3qao_A LMO0526 protein, MERR-l 20.8 4E+02 0.014 22.8 8.2 67 156-227 3-71 (249)
388 1qgp_A Protein (double strande 20.7 53 0.0018 23.4 2.2 29 199-227 11-42 (77)
389 3f1p_A Endothelial PAS domain- 20.6 47 0.0016 22.3 1.8 17 186-202 11-27 (117)
390 1zrj_A E1B-55KDA-associated pr 20.4 85 0.0029 21.5 3.1 32 151-182 10-45 (50)
391 2k5e_A Uncharacterized protein 20.4 1.1E+02 0.0036 21.9 3.7 31 154-184 38-68 (73)
392 1f1c_A Cytochrome C549; dimeri 20.3 52 0.0018 24.0 2.1 18 198-215 104-121 (129)
393 4a0z_A Transcription factor FA 20.2 78 0.0027 26.3 3.4 27 201-227 11-37 (190)
394 1o5l_A Transcriptional regulat 20.2 22 0.00075 28.0 0.0 41 157-201 165-205 (213)
395 2kfs_A Conserved hypothetical 20.1 1E+02 0.0034 25.6 4.0 44 155-204 30-73 (148)
396 3fc7_A HTR-like protein, senso 20.1 56 0.0019 21.6 2.1 15 188-202 33-47 (125)
No 1
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=100.00 E-value=9.2e-35 Score=219.23 Aligned_cols=69 Identities=49% Similarity=0.830 Sum_probs=66.5
Q ss_pred cCchhHHHHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHH
Q 025511 138 DGDRDLLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKA 206 (251)
Q Consensus 138 e~sq~lL~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~a 206 (251)
++++++|++||+|||.+|||+|+|||++|||+|++||+||++|+++|+|||||||||||||||++||+|
T Consensus 3 ~~~~~ll~~Fi~yIk~~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~eE~~a 71 (72)
T 1wi9_A 3 SGSSGFLTEFINYIKKSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITPSGPSS 71 (72)
T ss_dssp CSSCCHHHHHHHHHHHCSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCCSSCCC
T ss_pred hhHHHHHHHHHHHHHHcCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEecHHHhhc
Confidence 457899999999999999999999999999999999999999999999999999999999999999864
No 2
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=97.20 E-value=0.0018 Score=46.42 Aligned_cols=68 Identities=10% Similarity=0.122 Sum_probs=60.8
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHh
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKR 213 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~q 213 (251)
..+.+|..+.-+...|||..+|++..-+-..|+.|++.|-|...-|.|.++.++|++....+..++.+
T Consensus 28 ~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~~~~l~~~l~~ 95 (99)
T 3cuo_A 28 LILCMLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQRILYSIKNEAVNAIIATLKN 95 (99)
T ss_dssp HHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHHHHHHH
Confidence 45667777767899999999999999999999999999999999888888999999999999988875
No 3
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=97.10 E-value=0.0032 Score=45.03 Aligned_cols=67 Identities=13% Similarity=0.238 Sum_probs=57.1
Q ss_pred HHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceee---eCCCceEEEcHHHHHHHHHHHHh
Q 025511 147 FVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVM---DDRGKYIYISQAEMKAVADYIKR 213 (251)
Q Consensus 147 FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGVi---DDRGKFIYIS~EEm~aVA~fI~q 213 (251)
.+.++..+.-+...+||..+|++..-+-..|+.|++.|-|...- |.|.+++++|+.-...+..++..
T Consensus 21 iL~~L~~~~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~~~~~~~~ 90 (100)
T 1ub9_A 21 IMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRFLSS 90 (100)
T ss_dssp HHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHHHHHHHHH
Confidence 45667666778999999999999999999999999999999766 66788999999988877777654
No 4
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=96.42 E-value=0.017 Score=41.95 Aligned_cols=67 Identities=18% Similarity=0.199 Sum_probs=57.1
Q ss_pred HHHHHHHhcCccchHhH----HhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHH
Q 025511 146 DFVEYIKKHKCIPLEDL----AAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIK 212 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDL----Aa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~ 212 (251)
..+.+|..+.-+...+| |..+|++..-+-..|+.|++.|-|.-..|.|.++|++|+.-...+.....
T Consensus 12 ~iL~~l~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~~~~~~~ 82 (99)
T 1tbx_A 12 IVLAYLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFAISLKT 82 (99)
T ss_dssp HHHHHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHHHHHHHH
Confidence 35566766777888999 99999999999999999999999999999999999999987766655543
No 5
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=96.39 E-value=0.018 Score=42.42 Aligned_cols=68 Identities=16% Similarity=0.181 Sum_probs=58.4
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHhc
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQ 214 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~qr 214 (251)
..+.++ .+.-+...|||..+|++..-+-..|+.|++.|-|.-.-+.|.+|+++|+.-+..+..++...
T Consensus 25 ~IL~~L-~~~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~~~~~~~~~~~ 92 (114)
T 2oqg_A 25 EILTEL-GRADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKVGREIRYRALGAELNKTARTLERI 92 (114)
T ss_dssp HHHHHH-HHSCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHHHHH
T ss_pred HHHHHH-HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEecCCEEEEEechHHHHHHHHHHHHH
Confidence 355666 44558899999999999999999999999999999888888889999999998888877764
No 6
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=96.37 E-value=0.015 Score=42.29 Aligned_cols=67 Identities=13% Similarity=0.267 Sum_probs=58.6
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHh
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKR 213 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~q 213 (251)
..+.++.. .-+...|||..+|++..-+-..++.|++.|-|...-+.|..|.+++++.+..+..++..
T Consensus 27 ~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~l~~~l~~ 93 (98)
T 3jth_A 27 QILCMLHN-QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSEEVKAMIKLLHS 93 (98)
T ss_dssp HHHHHTTT-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCCEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHhc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECHHHHHHHHHHHHH
Confidence 34566665 67889999999999999999999999999999998888889999999999998888754
No 7
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=96.31 E-value=0.0077 Score=44.83 Aligned_cols=47 Identities=11% Similarity=0.167 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCccee
Q 025511 143 LLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGV 189 (251)
Q Consensus 143 lL~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGV 189 (251)
.|+..++||+.+..|.+.|||.+||++..-+-.=|..|++.|.|.=+
T Consensus 3 ~L~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 3 SLIQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp CHHHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred hHHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 37889999999999999999999999888888889999999998544
No 8
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=96.27 E-value=0.0089 Score=45.11 Aligned_cols=66 Identities=14% Similarity=0.189 Sum_probs=53.1
Q ss_pred HHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceee---eCCCceEEEcHHHHHHHHHHH
Q 025511 145 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVM---DDRGKYIYISQAEMKAVADYI 211 (251)
Q Consensus 145 ~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGVi---DDRGKFIYIS~EEm~aVA~fI 211 (251)
...+.+|..+. +...+||..+|++.+-+-..|+.|++.|-|+-.- |-|.++|++|+.-...+....
T Consensus 41 ~~iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~~~~~ 109 (146)
T 3tgn_A 41 EHILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIAEEHH 109 (146)
T ss_dssp HHHHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHHHHHH
T ss_pred HHHHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHHHHHH
Confidence 34677888888 9999999999999999999999999999999988 568899999999888777765
No 9
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=96.25 E-value=0.016 Score=45.56 Aligned_cols=73 Identities=15% Similarity=0.275 Sum_probs=59.6
Q ss_pred HHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcce---eeeCC--Cc----eEEEcH---HHHHHHHHHHH
Q 025511 145 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSG---VMDDR--GK----YIYISQ---AEMKAVADYIK 212 (251)
Q Consensus 145 ~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTG---ViDDR--GK----FIYIS~---EEm~aVA~fI~ 212 (251)
...+..+..+--....+||..+|++..-|-.||+.|++.|.|.| ++|.+ |. ||.|+. ..++.+++.|.
T Consensus 11 ~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~~~a~v~v~~~~~~~~~~~~~~l~ 90 (152)
T 2cg4_A 11 RGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGARIDVSPKQLGYDVGCFIGIILKSAKDYPSALAKLE 90 (152)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEEEEECTTTTTCCEEEEEEEEESSGGGHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceEEEecCHHHcCCeEEEEEEEEECCCCCHHHHHHHHh
Confidence 35777888888899999999999999999999999999999987 45543 54 777763 26889999998
Q ss_pred hcCCc
Q 025511 213 RQGRV 217 (251)
Q Consensus 213 qrGRV 217 (251)
..-.|
T Consensus 91 ~~peV 95 (152)
T 2cg4_A 91 SLDEV 95 (152)
T ss_dssp TCTTE
T ss_pred CCcCe
Confidence 86554
No 10
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=96.24 E-value=0.0098 Score=45.48 Aligned_cols=47 Identities=13% Similarity=0.220 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceee
Q 025511 144 LADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVM 190 (251)
Q Consensus 144 L~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGVi 190 (251)
|+..++||+.+..|.+.|||.+||++..-+-.=|..|++.|.|.-+-
T Consensus 4 L~~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 4 LMEVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp THHHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 67899999999999999999999998888888899999999999885
No 11
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=96.22 E-value=0.013 Score=45.61 Aligned_cols=72 Identities=14% Similarity=0.237 Sum_probs=59.5
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcce---eeeCC--Cc----eEEEc----HHHHHHHHHHHH
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSG---VMDDR--GK----YIYIS----QAEMKAVADYIK 212 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTG---ViDDR--GK----FIYIS----~EEm~aVA~fI~ 212 (251)
..+.++..+--+...+||..+|++..-+-.+|+.|++.|-|.+ ++|.+ |. |+.|+ +..++.++..+.
T Consensus 7 ~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~~a~v~v~~~~~~~~~~~~~~~l~ 86 (150)
T 2pn6_A 7 RILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGYYAYINPASLNLDYIVITSVKAKYGKNYHVELGNKLA 86 (150)
T ss_dssp HHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGGGGTCCEEEEEEEEECCCTTHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEEeecCHHHhCCceEEEEEEEecCChhHHHHHHHHHh
Confidence 4677787777789999999999999999999999999999987 56643 43 67776 667899999998
Q ss_pred hcCCc
Q 025511 213 RQGRV 217 (251)
Q Consensus 213 qrGRV 217 (251)
..-.|
T Consensus 87 ~~p~V 91 (150)
T 2pn6_A 87 QIPGV 91 (150)
T ss_dssp TSTTE
T ss_pred cCchh
Confidence 86444
No 12
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=96.21 E-value=0.0086 Score=42.89 Aligned_cols=57 Identities=12% Similarity=0.276 Sum_probs=46.9
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCccee--eeCCCceEEEcHH
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGV--MDDRGKYIYISQA 202 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGV--iDDRGKFIYIS~E 202 (251)
..+.++..+.-+...|||..||++..-+-..++.|++.|.|... -+.+|.|..++++
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~~~~~gr~~~y~l~~~ 62 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRSPLRRGMATYWFLKGE 62 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEECCSSSSSCEEEESSC
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeccCCCCcEEEEEChh
Confidence 45677887778899999999999999999999999999999843 4456667777654
No 13
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=96.15 E-value=0.024 Score=43.11 Aligned_cols=68 Identities=18% Similarity=0.271 Sum_probs=59.7
Q ss_pred HHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHhcC
Q 025511 147 FVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQG 215 (251)
Q Consensus 147 FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~qrG 215 (251)
.+.++.. .-+.+.+||..+|++..-+-..++.|++.|-|...-+.|.+|.+++++.+..+..++....
T Consensus 23 Il~~L~~-~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~~~~~~~ 90 (118)
T 3f6o_A 23 VLGRLSR-GPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEPFTAVEAWLAEQQ 90 (118)
T ss_dssp HHHHHHT-CCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHHHHHH
T ss_pred HHHHHHh-CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecCCEEEEEECHHHHHHHHHHHHHHH
Confidence 5566664 4568899999999999999999999999999999999899999999999999998887643
No 14
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=96.13 E-value=0.024 Score=43.55 Aligned_cols=67 Identities=6% Similarity=0.059 Sum_probs=55.2
Q ss_pred HHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHh
Q 025511 147 FVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKR 213 (251)
Q Consensus 147 FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~q 213 (251)
.+.++....-..+.+||..+|++..-+-..|+.|+..|.|...-+.|..|.+++++.+..++.++..
T Consensus 47 IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~~~~~~l~~ 113 (122)
T 1u2w_A 47 ITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEGKLALYSLGDEHIRQIMMIALA 113 (122)
T ss_dssp HHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC----CCEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEECCEEEEEECHHHHHHHHHHHHH
Confidence 4566765666889999999999999999999999999999988777888999999999999888764
No 15
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=96.13 E-value=0.028 Score=41.89 Aligned_cols=66 Identities=5% Similarity=0.121 Sum_probs=55.7
Q ss_pred HHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHh
Q 025511 147 FVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKR 213 (251)
Q Consensus 147 FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~q 213 (251)
.+.++.. .-..+.|||..+|++..-+-..|+.|+..|-|...-+.|..|.+++++.+..+...+..
T Consensus 31 IL~~L~~-~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~~~~~~l~~ 96 (106)
T 1r1u_A 31 IMELLSV-SEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIH 96 (106)
T ss_dssp HHHHHHH-CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHHHHHHH
Confidence 4556663 44689999999999999999999999999999998887778889999999888877653
No 16
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=96.11 E-value=0.025 Score=44.23 Aligned_cols=73 Identities=18% Similarity=0.236 Sum_probs=59.2
Q ss_pred HHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCccee---eeCC--Cc----eEEE--cHHHHHHHHHHHHh
Q 025511 145 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGV---MDDR--GK----YIYI--SQAEMKAVADYIKR 213 (251)
Q Consensus 145 ~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGV---iDDR--GK----FIYI--S~EEm~aVA~fI~q 213 (251)
...+.++..+.-+...+||..+|++..-|-.||+.|++.|.|.++ +|.+ |. ||.| .+...+.+++.|..
T Consensus 12 ~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~~~a~v~v~~~~~~~~~~~~~l~~ 91 (151)
T 2dbb_A 12 MQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKFTIIPDIDKLGYMYAIVLIKSKVPSDADKVISEISD 91 (151)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEEEEEECTGGGTEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEecCChHHhCCCEEEEEEEEeCCCCHHHHHHHHHc
Confidence 357788888888999999999999999999999999999999765 5543 54 5544 57778888888887
Q ss_pred cCCc
Q 025511 214 QGRV 217 (251)
Q Consensus 214 rGRV 217 (251)
.-.|
T Consensus 92 ~peV 95 (151)
T 2dbb_A 92 IEYV 95 (151)
T ss_dssp CTTE
T ss_pred CCCe
Confidence 6544
No 17
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=96.05 E-value=0.023 Score=42.85 Aligned_cols=67 Identities=9% Similarity=0.186 Sum_probs=57.2
Q ss_pred HHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHhc
Q 025511 147 FVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQ 214 (251)
Q Consensus 147 FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~qr 214 (251)
.+.++.. .-+.+.|||..+|++..-+-..|+.|++.|-|...-|.|..|.+++++.+..+..++...
T Consensus 30 IL~~L~~-~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~~l~~~ 96 (108)
T 2kko_A 30 ILDLLAQ-GERAVEAIATATGMNLTTASANLQALKSGGLVEARREGTRQYYRIAGEDVARLFALVQVV 96 (108)
T ss_dssp HHHHHTT-CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHHHHHHHH
Confidence 3445554 456899999999999999999999999999999888888888899999999998888754
No 18
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=96.01 E-value=0.041 Score=41.53 Aligned_cols=67 Identities=15% Similarity=0.109 Sum_probs=57.0
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceee---eCCCceEEEcHHHHHHHHHHHH
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVM---DDRGKYIYISQAEMKAVADYIK 212 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGVi---DDRGKFIYIS~EEm~aVA~fI~ 212 (251)
..+.+|..+.-+...+||..+|++.+-+-..|+.|++.|-|+-.- |-|.++|++|+.-...+.....
T Consensus 41 ~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~ 110 (143)
T 3oop_A 41 SVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTELRD 110 (143)
T ss_dssp HHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHHHHHH
Confidence 356777777889999999999999999999999999999999877 4578999999988777665544
No 19
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=95.96 E-value=0.049 Score=40.86 Aligned_cols=65 Identities=18% Similarity=0.174 Sum_probs=55.2
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee---CCCceEEEcHHHHHHHHHH
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADY 210 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD---DRGKFIYIS~EEm~aVA~f 210 (251)
..+.+|..+.-+...+||..+|++..-+-..|+.|++.|-|.-.-| -|.++|++|+.-...+...
T Consensus 33 ~iL~~l~~~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~ 100 (144)
T 1lj9_A 33 LYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPII 100 (144)
T ss_dssp HHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHCcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHHHHH
Confidence 3567777778889999999999999999999999999999998874 4788999999876655443
No 20
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.95 E-value=0.055 Score=40.72 Aligned_cols=66 Identities=17% Similarity=0.168 Sum_probs=53.8
Q ss_pred HHHHHHHh-cCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee---CCCceEEEcHHHHHHHHHHH
Q 025511 146 DFVEYIKK-HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYI 211 (251)
Q Consensus 146 ~FI~YIK~-~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD---DRGKFIYIS~EEm~aVA~fI 211 (251)
..+.+|.. +.-+...+||..+|++..-+-..|+.|++.|-|+-.-| -|.++|++|+.-...+....
T Consensus 39 ~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 108 (147)
T 2hr3_A 39 VVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYGNR 108 (147)
T ss_dssp HHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHHHHHH
Confidence 35667777 77889999999999999999999999999999988754 58999999998876665543
No 21
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=95.94 E-value=0.015 Score=41.23 Aligned_cols=50 Identities=8% Similarity=0.142 Sum_probs=41.4
Q ss_pred HHHHHHHhc-CccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceE
Q 025511 146 DFVEYIKKH-KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYI 197 (251)
Q Consensus 146 ~FI~YIK~~-KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFI 197 (251)
..++++..+ .-+.+.|||..+|++.+.|...|+.|++.|-|.- +.+|+|.
T Consensus 14 ~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~--~~~G~y~ 64 (67)
T 2heo_A 14 KILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS--PSPKYWS 64 (67)
T ss_dssp HHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE--EETTEEE
T ss_pred HHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec--CCCceEe
Confidence 456666655 6799999999999999999999999999999643 6678764
No 22
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=95.92 E-value=0.034 Score=39.52 Aligned_cols=65 Identities=15% Similarity=0.263 Sum_probs=52.3
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee--CCCceEEEcHHHHHHHHHH
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD--DRGKYIYISQAEMKAVADY 210 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD--DRGKFIYIS~EEm~aVA~f 210 (251)
..+.+|..+.-+...+||..+|++..-+-..|+.|++.|-|...-| .|.+|+|+|+.--..+...
T Consensus 24 ~il~~l~~~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~~~~r~~~~~~t~~g~~~~~~~ 90 (109)
T 1sfx_A 24 RIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAEKPEKVLKEF 90 (109)
T ss_dssp HHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEEECCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEeecCCceEEEEecCcHHHHHHHH
Confidence 4566776667789999999999999999999999999999998775 4567888887655444333
No 23
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=95.85 E-value=0.02 Score=42.59 Aligned_cols=52 Identities=13% Similarity=0.252 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHhc------CccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCC
Q 025511 142 DLLADFVEYIKKH------KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDR 193 (251)
Q Consensus 142 ~lL~~FI~YIK~~------KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDR 193 (251)
...+..++||+.. ..+.+.|||..||+++.-|-.-|..|++.|.|.=+-.-|
T Consensus 4 ~r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~~ggr 61 (77)
T 2jt1_A 4 SIVTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKVNAGK 61 (77)
T ss_dssp THHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESCSS
T ss_pred HHHHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEecCCCC
Confidence 3456677777776 899999999999999888888999999999996554333
No 24
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=95.85 E-value=0.03 Score=41.11 Aligned_cols=66 Identities=8% Similarity=0.136 Sum_probs=57.2
Q ss_pred HHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHh
Q 025511 147 FVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKR 213 (251)
Q Consensus 147 FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~q 213 (251)
.+.++... -+...|||..+|++..-+-..++.|+..|-|...-+.|..|.++|++.+..+..++..
T Consensus 28 Il~~L~~~-~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~~~~~l~~ 93 (102)
T 3pqk_A 28 LVCTLVEG-EFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNIKQIFYRLTEAKAAQLVNALYT 93 (102)
T ss_dssp HHHHHHTC-CBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSSSCCEEEECSSTHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECcHHHHHHHHHHHH
Confidence 45566554 4789999999999999999999999999999998888889999999988888887754
No 25
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=95.77 E-value=0.032 Score=44.32 Aligned_cols=73 Identities=16% Similarity=0.362 Sum_probs=57.6
Q ss_pred HHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcce---eeeCC--Cc----eE--EEcHHH--HHHHHHHH
Q 025511 145 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSG---VMDDR--GK----YI--YISQAE--MKAVADYI 211 (251)
Q Consensus 145 ~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTG---ViDDR--GK----FI--YIS~EE--m~aVA~fI 211 (251)
...++++..+.-+...+||..+|++..-|-.||+.|++.|.|.+ ++|.+ |. || .+++.. ++.++..|
T Consensus 13 ~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~~a~v~v~~~~~~~~~~~~~~~l 92 (162)
T 2p5v_A 13 IKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPESVNLGLQAFIRVSIRKAKDAREDFAASV 92 (162)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTGGGTCCEEEEEEEEECSSTTHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeeecccCChHHhcccEEEEEEEEEcCCchHHHHHHHHH
Confidence 45777888877789999999999999999999999999999986 45544 44 33 346654 88899888
Q ss_pred HhcCCc
Q 025511 212 KRQGRV 217 (251)
Q Consensus 212 ~qrGRV 217 (251)
...-.|
T Consensus 93 ~~~peV 98 (162)
T 2p5v_A 93 RKWPEV 98 (162)
T ss_dssp TTCTTE
T ss_pred hcChhh
Confidence 776544
No 26
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=95.75 E-value=0.039 Score=42.27 Aligned_cols=73 Identities=19% Similarity=0.332 Sum_probs=58.5
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCccee---eeCC--Cce----E--EEcHHHHHHHHHHHHhc
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGV---MDDR--GKY----I--YISQAEMKAVADYIKRQ 214 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGV---iDDR--GKF----I--YIS~EEm~aVA~fI~qr 214 (251)
..+.++..+.-....+||..+|++..-+-.+|+.|++.|-|.++ +|.+ |.. + .+.+..+..++..+.+.
T Consensus 8 ~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~l~~~ 87 (141)
T 1i1g_A 8 IILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGYTIKINPKKLGYSLVTITGVDTKPEKLFEVAEKLKEY 87 (141)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCCCCCCCSGGGTCCEEEEEEEEECGGGHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeccccccChHHhCccEEEEEEEEECchhHHHHHHHHhcC
Confidence 46677776666799999999999999999999999999999765 3432 432 2 23788999999999998
Q ss_pred CCcc
Q 025511 215 GRVS 218 (251)
Q Consensus 215 GRVS 218 (251)
+.|.
T Consensus 88 ~~v~ 91 (141)
T 1i1g_A 88 DFVK 91 (141)
T ss_dssp TTEE
T ss_pred CCeE
Confidence 7765
No 27
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=95.69 E-value=0.068 Score=41.25 Aligned_cols=67 Identities=19% Similarity=0.244 Sum_probs=56.5
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee---CCCceEEEcHHHHHHHHHHHH
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYIK 212 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD---DRGKFIYIS~EEm~aVA~fI~ 212 (251)
..+.+|..+.-+...+||..+|++.+-+-..|+.|++.|-|.-.-| -|.++|++|+.-...+.....
T Consensus 54 ~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~ 123 (159)
T 3s2w_A 54 PFLMRLYREDGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEPDMKK 123 (159)
T ss_dssp HHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHHHHHH
Confidence 4566777788889999999999999999999999999999998874 478899999987776665544
No 28
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=95.68 E-value=0.043 Score=40.71 Aligned_cols=66 Identities=9% Similarity=0.175 Sum_probs=55.6
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee---CCCceEEEcHHHHHHHHHHH
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYI 211 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD---DRGKFIYIS~EEm~aVA~fI 211 (251)
..+.+|..+.-+...+||..+|++..-+-..|+.|++.|-|+-.-| -|.+++++|+.-...+....
T Consensus 37 ~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~~~~~ 105 (139)
T 3bja_A 37 GVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKKQVD 105 (139)
T ss_dssp HHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHHHHHH
Confidence 4667777788899999999999999999999999999999998754 47889999998776665443
No 29
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=95.62 E-value=0.017 Score=45.32 Aligned_cols=73 Identities=18% Similarity=0.275 Sum_probs=57.6
Q ss_pred HHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceee---eCC--C----ceEEEc---HHHHHHHHHHHH
Q 025511 145 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVM---DDR--G----KYIYIS---QAEMKAVADYIK 212 (251)
Q Consensus 145 ~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGVi---DDR--G----KFIYIS---~EEm~aVA~fI~ 212 (251)
...+.++..+.-+...+||..+|++..-+-.+|+.|++.|.|.++- |.| | -||.|+ +...+.++..+.
T Consensus 10 ~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~~a~v~~~~~~~~~~~~~~~~l~ 89 (150)
T 2w25_A 10 RILVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYSARINPEAVGHLLSAFVAITPLDPSQPDDAPARLE 89 (150)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTGGGTCCEEEEEEEEESCTTSCCCHHHHHT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEeccChhHcccceEEEEEEEEcCCCCHHHHHHHHh
Confidence 3567778777779999999999999999999999999999997654 443 3 267777 555677888887
Q ss_pred hcCCc
Q 025511 213 RQGRV 217 (251)
Q Consensus 213 qrGRV 217 (251)
..-.|
T Consensus 90 ~~p~V 94 (150)
T 2w25_A 90 HIEEV 94 (150)
T ss_dssp TCTTE
T ss_pred cCcCe
Confidence 65444
No 30
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=95.60 E-value=0.052 Score=40.26 Aligned_cols=65 Identities=12% Similarity=0.104 Sum_probs=54.7
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee---CCCceEEEcHHHHHHHHHH
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADY 210 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD---DRGKFIYIS~EEm~aVA~f 210 (251)
..+.+|..+.-+...+||..+|++..-+-..|+.|++.|-|.-.-| -|.+++++|+.-...+...
T Consensus 42 ~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 109 (140)
T 2nnn_A 42 AALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELEAG 109 (140)
T ss_dssp HHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHHHHH
Confidence 3566777777899999999999999999999999999999998754 4788999999876665544
No 31
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=95.57 E-value=0.091 Score=40.11 Aligned_cols=66 Identities=9% Similarity=0.093 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHH
Q 025511 142 DLLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADY 210 (251)
Q Consensus 142 ~lL~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~f 210 (251)
..|..++.++....-+.+.+||..+|++..-+-..|+.|++.|-|.-. +++.+++|+.-...+...
T Consensus 8 ~~L~~i~~l~~~~~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~---~~~~~~LT~~g~~~~~~~ 73 (142)
T 1on2_A 8 MYIEQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYE---KYRGLVLTSKGKKIGKRL 73 (142)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE---TTTEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe---eCceEEEchhHHHHHHHH
Confidence 456677777777788999999999999999999999999999988764 568999999865555443
No 32
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=95.50 E-value=0.035 Score=45.41 Aligned_cols=74 Identities=16% Similarity=0.316 Sum_probs=60.9
Q ss_pred HHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCccee---eeCC--Cc----eE--EEcHHHHHHHHHHHHh
Q 025511 145 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGV---MDDR--GK----YI--YISQAEMKAVADYIKR 213 (251)
Q Consensus 145 ~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGV---iDDR--GK----FI--YIS~EEm~aVA~fI~q 213 (251)
...+..+..+.-+...+||..+|++..-|..||+.|++.|.|.++ +|.+ |. || .+.++.+++++..|..
T Consensus 30 ~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~~a~vd~~~~G~~~~a~v~v~~~~~~~~~v~~~l~~ 109 (171)
T 2e1c_A 30 KKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVKAGKYSEVASNLAK 109 (171)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGGGGTCCEEEEEEEEECTTCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeeEEECHHHcCCCEEEEEEEEECcchHHHHHHHHhc
Confidence 467888888888999999999999999999999999999999763 5543 54 44 4458889999999998
Q ss_pred cCCcc
Q 025511 214 QGRVS 218 (251)
Q Consensus 214 rGRVS 218 (251)
.-.|.
T Consensus 110 ~peV~ 114 (171)
T 2e1c_A 110 YPEIV 114 (171)
T ss_dssp STTEE
T ss_pred CcCeE
Confidence 76654
No 33
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=95.49 E-value=0.066 Score=39.80 Aligned_cols=62 Identities=11% Similarity=0.200 Sum_probs=53.5
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee---CCCceEEEcHHHHHHH
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAV 207 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD---DRGKFIYIS~EEm~aV 207 (251)
..+.+|..+.-+...+||..+|++..-+-..|+.|++.|-|.-.-| -|.+++++|+.-...+
T Consensus 35 ~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 35 SILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 3566777777799999999999999999999999999999998876 5789999999876655
No 34
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=95.49 E-value=0.092 Score=40.28 Aligned_cols=65 Identities=15% Similarity=0.185 Sum_probs=54.8
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee---CCCceEEEcHHHHHHHHHH
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADY 210 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD---DRGKFIYIS~EEm~aVA~f 210 (251)
..+.+|..+.-+...+||..+|++..-+-..|+.|++.|-|+-.-| -|.++|++|+.-...+...
T Consensus 48 ~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~ 115 (154)
T 2eth_A 48 YAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGEI 115 (154)
T ss_dssp HHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHHHHH
Confidence 3566777777899999999999999999999999999999998874 4788999999876665544
No 35
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=95.49 E-value=0.092 Score=40.37 Aligned_cols=65 Identities=12% Similarity=0.203 Sum_probs=54.4
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceee---eCCCceEEEcHHHHHHHHHH
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVM---DDRGKYIYISQAEMKAVADY 210 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGVi---DDRGKFIYIS~EEm~aVA~f 210 (251)
..+.+|..+.-+...+||..+|++..-+-..|+.|++.|-|+-.- |-|.++|++|+.-...+...
T Consensus 56 ~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~ 123 (162)
T 3cjn_A 56 RALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDRL 123 (162)
T ss_dssp HHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHH
Confidence 356677777788999999999999999999999999999999876 45789999999766555443
No 36
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=95.48 E-value=0.038 Score=43.38 Aligned_cols=74 Identities=16% Similarity=0.316 Sum_probs=60.6
Q ss_pred HHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCccee---eeCC--Cc----eE--EEcHHHHHHHHHHHHh
Q 025511 145 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGV---MDDR--GK----YI--YISQAEMKAVADYIKR 213 (251)
Q Consensus 145 ~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGV---iDDR--GK----FI--YIS~EEm~aVA~fI~q 213 (251)
...++++..+--....+||..+|++..-+-.||+.|++.|.|.++ +|.+ |. || .+.++.++.+++.+.+
T Consensus 10 ~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~G~~~~a~v~v~~~~~~~~~~~~~l~~ 89 (151)
T 2cyy_A 10 KKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVKAGKYSEVASNLAK 89 (151)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCCCCCCCGGGGTCCEEEEEEEEECTTCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEEECHHHCCccEEEEEEEEECcccHHHHHHHHhc
Confidence 357788888888999999999999999999999999999999763 5543 54 44 4568889999999998
Q ss_pred cCCcc
Q 025511 214 QGRVS 218 (251)
Q Consensus 214 rGRVS 218 (251)
.-.|.
T Consensus 90 ~p~V~ 94 (151)
T 2cyy_A 90 YPEIV 94 (151)
T ss_dssp CTTEE
T ss_pred CCCee
Confidence 76654
No 37
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.48 E-value=0.056 Score=40.20 Aligned_cols=64 Identities=11% Similarity=0.171 Sum_probs=54.0
Q ss_pred HHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee---CCCceEEEcHHHHHHHHHH
Q 025511 147 FVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADY 210 (251)
Q Consensus 147 FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD---DRGKFIYIS~EEm~aVA~f 210 (251)
.+.+|..+.-+...+||..+|++..-+-..|+.|++.|-|+-.-| -|.++|++|+.-...+...
T Consensus 41 iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 107 (142)
T 2fbi_A 41 VIRILRQQGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSM 107 (142)
T ss_dssp HHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHHHHH
Confidence 556677777789999999999999999999999999999998865 3788999999876665544
No 38
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=95.48 E-value=0.054 Score=40.56 Aligned_cols=65 Identities=15% Similarity=0.191 Sum_probs=54.6
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee---CCCceEEEcHHHHHHHHHH
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADY 210 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD---DRGKFIYIS~EEm~aVA~f 210 (251)
..+.+|..+.-+...+||..+|++..-+-..|+.|++.|-|+-.-| -|.+++++|+.-...+...
T Consensus 37 ~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~ 104 (145)
T 2a61_A 37 DILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKV 104 (145)
T ss_dssp HHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHHHHH
Confidence 3566777777899999999999999999999999999999999865 4778999999876665544
No 39
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=95.46 E-value=0.068 Score=41.74 Aligned_cols=72 Identities=21% Similarity=0.451 Sum_probs=58.4
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCccee---eeCC--Cc----eEE--EcHHHHHHHHHHHHhc
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGV---MDDR--GK----YIY--ISQAEMKAVADYIKRQ 214 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGV---iDDR--GK----FIY--IS~EEm~aVA~fI~qr 214 (251)
..++++..+.-+...+||..+|++..-|-.+|+.|++.|.|.++ +|.+ |. ||. +.+..++.++..|...
T Consensus 9 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~~a~v~v~~~~~~~~~~~~~l~~~ 88 (144)
T 2cfx_A 9 NIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYERFKSYIQTL 88 (144)
T ss_dssp HHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEEECTGGGTCCEEEEEEEEEGGGCHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEecccChhhcCceEEEEEEEEECcccHHHHHHHHhcC
Confidence 57778888888999999999999999999999999999999874 5554 43 333 4677789999999876
Q ss_pred CCc
Q 025511 215 GRV 217 (251)
Q Consensus 215 GRV 217 (251)
-.|
T Consensus 89 p~V 91 (144)
T 2cfx_A 89 PNI 91 (144)
T ss_dssp TTE
T ss_pred hhh
Confidence 443
No 40
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=95.45 E-value=0.085 Score=39.81 Aligned_cols=66 Identities=14% Similarity=0.225 Sum_probs=53.8
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee---CCCceEEEcHHHHHHHHHHH
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYI 211 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD---DRGKFIYIS~EEm~aVA~fI 211 (251)
..+.+|..+.-+...+||..+|++..-+-..|+.|++.|-|.-.-| -|.++|++|+.-...+....
T Consensus 46 ~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 114 (150)
T 2rdp_A 46 VALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIEEVI 114 (150)
T ss_dssp HHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHHHHHH
Confidence 3556677777899999999999999999999999999999998764 47889999998776655443
No 41
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=95.45 E-value=0.073 Score=39.64 Aligned_cols=65 Identities=17% Similarity=0.280 Sum_probs=53.7
Q ss_pred HHHHHHHhcC--ccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee---CCCceEEEcHHHHHHHHHH
Q 025511 146 DFVEYIKKHK--CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADY 210 (251)
Q Consensus 146 ~FI~YIK~~K--VV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD---DRGKFIYIS~EEm~aVA~f 210 (251)
..+.+|..+. -+...+||..+|++..-+-..|+.|++.|-|.-.-| -|.++|++|+.-...+...
T Consensus 38 ~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~~~~ 107 (141)
T 3bro_A 38 TIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLETII 107 (141)
T ss_dssp HHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHHHH
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHHHHH
Confidence 3566777776 789999999999999999999999999999988765 4788999999875544433
No 42
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=95.45 E-value=0.1 Score=38.95 Aligned_cols=67 Identities=19% Similarity=0.291 Sum_probs=55.7
Q ss_pred HHHHHHHhcC--ccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee---CCCceEEEcHHHHHHHHHHHH
Q 025511 146 DFVEYIKKHK--CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYIK 212 (251)
Q Consensus 146 ~FI~YIK~~K--VV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD---DRGKFIYIS~EEm~aVA~fI~ 212 (251)
..+.+|..+. -+...+||..+|++.+-+-..|+.|++.|-|+-.-| -|.++|++|+.-...+.....
T Consensus 35 ~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~~~~~ 106 (139)
T 3eco_A 35 HTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFTS 106 (139)
T ss_dssp HHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHHHHHH
Confidence 4566777765 788999999999999999999999999999998765 478999999988777665544
No 43
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=95.42 E-value=0.08 Score=42.80 Aligned_cols=69 Identities=14% Similarity=0.203 Sum_probs=60.1
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHhcC
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQG 215 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~qrG 215 (251)
..+.++. ..-+.+.+||..+|++..-+-.-|+.|++.|-|...-|.|.+|.++|++.+..+..++...-
T Consensus 62 ~IL~~L~-~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~Gr~~~y~lt~~~~~~l~~~l~~~~ 130 (151)
T 3f6v_A 62 RLVQLLT-SGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGLAQLRALFDSFW 130 (151)
T ss_dssp HHHHHGG-GCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHHHHS
T ss_pred HHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHHHHHHHHH
Confidence 3456676 45578999999999999999999999999999999999999999999999999999887543
No 44
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=95.41 E-value=0.061 Score=40.37 Aligned_cols=65 Identities=9% Similarity=0.152 Sum_probs=55.5
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee---CCCceEEEcHHHHHHHHHH
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADY 210 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD---DRGKFIYIS~EEm~aVA~f 210 (251)
..+.+|..+.-+...+||..+|++..-+-..|+.|++.|-|+-.-| -|.++|++|+.-...+...
T Consensus 41 ~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~ 108 (142)
T 2bv6_A 41 LVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPEL 108 (142)
T ss_dssp HHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHHHHH
Confidence 3566777777899999999999999999999999999999998876 5788999999987665543
No 45
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=95.39 E-value=0.11 Score=39.34 Aligned_cols=65 Identities=9% Similarity=0.158 Sum_probs=54.5
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee---CCCceEEEcHHHHHHHHHH
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADY 210 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD---DRGKFIYIS~EEm~aVA~f 210 (251)
..+.+|..+.-+...+||..+|++..-+-..|+.|++.|-|.-.-| -|.++|++|+.-...+...
T Consensus 44 ~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 111 (152)
T 3bj6_A 44 AILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIITAI 111 (152)
T ss_dssp HHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHHHHH
Confidence 3566777777889999999999999999999999999999998764 5788999999876655443
No 46
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=95.34 E-value=0.069 Score=40.36 Aligned_cols=68 Identities=7% Similarity=0.032 Sum_probs=53.9
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee---CCCceEEEcHHHHHHHHHHHHh
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYIKR 213 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD---DRGKFIYIS~EEm~aVA~fI~q 213 (251)
..+.+|..+.-+...+||..+|++.+-+-..|+.|++.|-|+-.-| -|.++|++|+.-...+......
T Consensus 44 ~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~~~~~~ 114 (148)
T 3nrv_A 44 RIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDF 114 (148)
T ss_dssp HHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHHHHHHH
Confidence 4667788888899999999999999999999999999999987754 5799999999887776665443
No 47
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=95.33 E-value=0.077 Score=41.19 Aligned_cols=67 Identities=10% Similarity=0.137 Sum_probs=56.7
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee---CCCceEEEcHHHHHHHHHHHH
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYIK 212 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD---DRGKFIYIS~EEm~aVA~fI~ 212 (251)
..+.+|..+.-+...+||..+|++.+-+-..|+.|++.|-|+-.-| -|.++|++|+.-...+.....
T Consensus 50 ~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~ 119 (162)
T 3k0l_A 50 TALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQCNQ 119 (162)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHHHHHH
Confidence 4566777888899999999999999999999999999999998875 478999999987766655443
No 48
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=95.31 E-value=0.076 Score=38.73 Aligned_cols=57 Identities=12% Similarity=0.099 Sum_probs=48.0
Q ss_pred ccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHH
Q 025511 156 CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIK 212 (251)
Q Consensus 156 VV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~ 212 (251)
.+...+||..+|++.+-+-.-|+.|++.|-|.---|-|.++|++|+.-...+.....
T Consensus 30 ~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~~G~~~~~~~~~ 86 (95)
T 2qvo_A 30 DVYIQYIASKVNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLTDKGQKIAQQIKS 86 (95)
T ss_dssp CEEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEEChhHHHHHHHHHH
Confidence 388999999999999999999999999999955556688999999987766555443
No 49
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=95.28 E-value=0.12 Score=38.63 Aligned_cols=64 Identities=19% Similarity=0.219 Sum_probs=53.9
Q ss_pred HHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee---CCCceEEEcHHHHHHHHHHH
Q 025511 147 FVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYI 211 (251)
Q Consensus 147 FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD---DRGKFIYIS~EEm~aVA~fI 211 (251)
.+.+|. +.-+...+||..+|++..-+-..|+.|++.|-|+-.-| -|.+++++|+.-...+....
T Consensus 42 iL~~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~~ 108 (146)
T 2gxg_A 42 VLRATS-DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFNKGI 108 (146)
T ss_dssp HHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHH
T ss_pred HHHHHh-cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHHHHHH
Confidence 556676 78889999999999999999999999999999998765 47788999998776665543
No 50
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=95.27 E-value=0.13 Score=38.28 Aligned_cols=66 Identities=12% Similarity=0.178 Sum_probs=55.2
Q ss_pred HHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee---CCCceEEEcHHHHHHHHHHHH
Q 025511 147 FVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYIK 212 (251)
Q Consensus 147 FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD---DRGKFIYIS~EEm~aVA~fI~ 212 (251)
.+.+|..+.-+...+||..+|++.+.+-..|+.|++.|-|.-..| -|.+++++|+.-...+.....
T Consensus 39 iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~~ 107 (138)
T 1jgs_A 39 VLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCHQ 107 (138)
T ss_dssp HHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHHHHHHH
Confidence 566677777789999999999999999999999999999998765 378899999987776655443
No 51
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=95.20 E-value=0.098 Score=39.50 Aligned_cols=67 Identities=9% Similarity=0.113 Sum_probs=56.0
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee---CCCceEEEcHHHHHHHHHHHH
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYIK 212 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD---DRGKFIYIS~EEm~aVA~fI~ 212 (251)
..+.+|..+.-+...+||..+|++.+-+-..|+.|++.|-|+-.-| -|.++|++|+.-...+.....
T Consensus 35 ~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~ 104 (145)
T 3g3z_A 35 AVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAAPLTE 104 (145)
T ss_dssp HHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHHHHHHH
Confidence 4566776677799999999999999999999999999999997665 378999999988776655443
No 52
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=95.15 E-value=0.12 Score=39.19 Aligned_cols=65 Identities=11% Similarity=0.156 Sum_probs=53.7
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee---CCCceEEEcHHHHHHHHHH
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADY 210 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD---DRGKFIYIS~EEm~aVA~f 210 (251)
..+.+|..+.-+...+||..+|++..-+-..|+.|++.|-|+-.-| -|.+++++|+.-...+...
T Consensus 41 ~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 108 (155)
T 1s3j_A 41 FVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEEV 108 (155)
T ss_dssp HHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHHHHH
Confidence 3556677777889999999999999999999999999999988764 4788999999865555443
No 53
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=95.15 E-value=0.052 Score=43.50 Aligned_cols=74 Identities=19% Similarity=0.371 Sum_probs=59.3
Q ss_pred HHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcce---eeeCC--Cc----eEEEcH-----HHHHHHHHH
Q 025511 145 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSG---VMDDR--GK----YIYISQ-----AEMKAVADY 210 (251)
Q Consensus 145 ~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTG---ViDDR--GK----FIYIS~-----EEm~aVA~f 210 (251)
...++.+..+--+...+||..+|++...|..||+.|++.|.|.| ++|.+ |. ||.|+- +.++.++..
T Consensus 6 ~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~~a~~~~~~lG~~~~a~v~v~v~~~~~~~~~~~~~~ 85 (162)
T 3i4p_A 6 RKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRRVALLDPVKVNTKVTVFVSIRTASHSIEWLKRFSEV 85 (162)
T ss_dssp HHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCCCCCCCTTTTTCCEEEEEEEECCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeceeeeCHHHhcCcEEEEEEEEEcCCChHHHHHHHHH
Confidence 35677888888889999999999999999999999999999875 45654 43 555552 458999999
Q ss_pred HHhcCCcc
Q 025511 211 IKRQGRVS 218 (251)
Q Consensus 211 I~qrGRVS 218 (251)
|...--|.
T Consensus 86 l~~~peV~ 93 (162)
T 3i4p_A 86 VSEFPEVV 93 (162)
T ss_dssp HHHCTTEE
T ss_pred HhcCCCEE
Confidence 98876654
No 54
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.11 E-value=0.1 Score=38.95 Aligned_cols=65 Identities=15% Similarity=0.162 Sum_probs=54.7
Q ss_pred HHHHHH-HhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee---CCCceEEEcHHHHHHHHHH
Q 025511 146 DFVEYI-KKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADY 210 (251)
Q Consensus 146 ~FI~YI-K~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD---DRGKFIYIS~EEm~aVA~f 210 (251)
..+.+| ..+.-+...+||..+|++..-+-..|+.|++.|-|+-.-| -|.++|++|+.-...+...
T Consensus 41 ~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 109 (146)
T 2fbh_A 41 LVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIADI 109 (146)
T ss_dssp HHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHHHHH
Confidence 355667 6777889999999999999999999999999999998764 4788999999877666554
No 55
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=95.08 E-value=0.068 Score=42.00 Aligned_cols=60 Identities=13% Similarity=0.180 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCccchHhHHhHc--CCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHH
Q 025511 145 ADFVEYIKKHKCIPLEDLAAEF--KLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAV 207 (251)
Q Consensus 145 ~~FI~YIK~~KVV~LEDLAa~F--gLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aV 207 (251)
...+.+++.+--....+||..+ |++++-|-.||+.|++.|-|.+. .|| +..||+.-...+
T Consensus 16 ~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~--~rg-~Y~LT~~G~~~l 77 (111)
T 3b73_A 16 DRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPL--ANG-VYVITEEGEAYL 77 (111)
T ss_dssp HHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEEC--STT-CEEECHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEec--CCc-eEEECchHHHHH
Confidence 5677888887889999999999 99999999999999999999986 688 778999875443
No 56
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=95.03 E-value=0.067 Score=40.54 Aligned_cols=66 Identities=11% Similarity=0.109 Sum_probs=54.6
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee---CCCceEEEcHHHHHHHHHHH
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYI 211 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD---DRGKFIYIS~EEm~aVA~fI 211 (251)
..+.+|..+.-+...|||..+|++.+-+-.-|+.|++.|-|+=.-| -|.++|++|++-...+....
T Consensus 40 ~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 108 (140)
T 3hsr_A 40 IVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPLA 108 (140)
T ss_dssp HHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHHHHH
T ss_pred HHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHHHHH
Confidence 4567777788899999999999999999999999999999998864 48899999999877776654
No 57
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=95.02 E-value=0.14 Score=39.74 Aligned_cols=67 Identities=10% Similarity=0.147 Sum_probs=56.0
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee---CCCceEEEcHHHHHHHHHHHH
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYIK 212 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD---DRGKFIYIS~EEm~aVA~fI~ 212 (251)
..+.+|..+.-+...+||..+|++.+-+-..|+.|++.|-|+-.-| -|.++|++|+.-...+.....
T Consensus 57 ~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~~ 126 (161)
T 3e6m_A 57 RLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEISP 126 (161)
T ss_dssp HHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHHHHHH
Confidence 3566777777889999999999999999999999999999997754 588999999988776665544
No 58
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=95.02 E-value=0.086 Score=40.35 Aligned_cols=69 Identities=10% Similarity=0.096 Sum_probs=55.2
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee---CCCceEEEcHHHHHHHHHHHHhc
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYIKRQ 214 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD---DRGKFIYIS~EEm~aVA~fI~qr 214 (251)
..+.+|..+.-+...+||..+|++.+-+-.-|+.|++.|-|+-.-| -|.++|++|+.-...+.......
T Consensus 45 ~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~ 116 (149)
T 4hbl_A 45 LVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQEAVFEAI 116 (149)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHHHHHHHH
Confidence 4667788888899999999999999999999999999999997754 58899999999888877665443
No 59
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=95.00 E-value=0.075 Score=40.42 Aligned_cols=67 Identities=15% Similarity=0.306 Sum_probs=56.7
Q ss_pred HHHHHHHhc--CccchHhHHhHcCCChHHHHHHHHHHHhcCCcceee---eCCCceEEEcHHHHHHHHHHHH
Q 025511 146 DFVEYIKKH--KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVM---DDRGKYIYISQAEMKAVADYIK 212 (251)
Q Consensus 146 ~FI~YIK~~--KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGVi---DDRGKFIYIS~EEm~aVA~fI~ 212 (251)
..+.+|..+ .-+...|||..+|++.+-+-.-|+.|++.|-|.=.- |-|.++|++|+.-.+.+.....
T Consensus 41 ~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~~~~~ 112 (127)
T 2frh_A 41 AVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLLS 112 (127)
T ss_dssp HHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHHH
Confidence 356677777 789999999999999999999999999999998754 4589999999998877766654
No 60
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=94.99 E-value=0.086 Score=40.43 Aligned_cols=66 Identities=9% Similarity=0.081 Sum_probs=51.2
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceee---eCCCceEEEcHHHHHHHHHHH
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVM---DDRGKYIYISQAEMKAVADYI 211 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGVi---DDRGKFIYIS~EEm~aVA~fI 211 (251)
..+.+|..+.-+...+||..+|++..-+-..|+.|++.|-|.-.- |-|.++|++|+.-...+....
T Consensus 53 ~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 121 (162)
T 2fa5_A 53 RVITILALYPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYETVA 121 (162)
T ss_dssp HHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHHHHH
Confidence 356677777889999999999999999999999999999998766 457899999998766655443
No 61
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=94.92 E-value=0.13 Score=38.14 Aligned_cols=65 Identities=15% Similarity=0.192 Sum_probs=54.1
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee---CCCceEEEcHHHHHHHHHH
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADY 210 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD---DRGKFIYIS~EEm~aVA~f 210 (251)
..+.+|..+.-+...|||..+|++..-+-..|+.|++.|-|.-.-| -|.+++++|+.-...+...
T Consensus 33 ~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~~~ 100 (138)
T 3bpv_A 33 ACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIPLI 100 (138)
T ss_dssp HHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHHHHH
Confidence 3566777778889999999999999999999999999999998765 4678899999866555443
No 62
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=94.91 E-value=0.14 Score=38.60 Aligned_cols=66 Identities=12% Similarity=0.149 Sum_probs=56.0
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeC---CCceEEEcHHHHHHHHHHHH
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDD---RGKYIYISQAEMKAVADYIK 212 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDD---RGKFIYIS~EEm~aVA~fI~ 212 (251)
..+.+|..+.- ...+||..+|++.+-+-..|+.|++.|-|+-.-|. |.++|++|+.-...+.....
T Consensus 41 ~iL~~l~~~~~-~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~ 109 (144)
T 3f3x_A 41 SILKATSEEPR-SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLLEANE 109 (144)
T ss_dssp HHHHHHHHSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHHHHHHH
Confidence 46677777777 99999999999999999999999999999988764 67799999988777665544
No 63
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=94.91 E-value=0.055 Score=40.21 Aligned_cols=57 Identities=19% Similarity=0.355 Sum_probs=43.5
Q ss_pred HhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceee---eCCCceEE---EcHHHHHHHH
Q 025511 152 KKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVM---DDRGKYIY---ISQAEMKAVA 208 (251)
Q Consensus 152 K~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGVi---DDRGKFIY---IS~EEm~aVA 208 (251)
+...-+...+||..||++...|-..++.|++.|-|...- ..+|.|+| ++++++..+.
T Consensus 29 ~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~~~~~~~~g~~v~~~~~~~~~i~~~~ 91 (110)
T 1q1h_A 29 DKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYRKTRDKDSGWFIYYWKPNIDQINEIL 91 (110)
T ss_dssp HHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEEEEC---CCCCEEEEECTHHHHC---
T ss_pred HcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecccCCCceEEEEeecCHHHHHHHH
Confidence 344247899999999999999999999999999998652 46788888 7877765543
No 64
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=94.88 E-value=0.1 Score=39.65 Aligned_cols=64 Identities=11% Similarity=0.193 Sum_probs=52.4
Q ss_pred HHHHHhcCccc--hHhHHhHc-CCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHH------HHHHHHHHHHh
Q 025511 148 VEYIKKHKCIP--LEDLAAEF-KLRTQECINRITSLENMGRLSGVMDDRGKYIYISQA------EMKAVADYIKR 213 (251)
Q Consensus 148 I~YIK~~KVV~--LEDLAa~F-gLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~E------Em~aVA~fI~q 213 (251)
+.++. ..-.. ..|||..+ |++..-+-.+++.|++.|-|+-..+ |..++++|+. .+.+++.|+..
T Consensus 33 L~~L~-~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~-r~~~y~LT~~G~~l~~~l~~l~~w~~~ 105 (111)
T 3df8_A 33 ISVLG-NGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG-QITTYALTEKGMNVRNSLMPLLQYISV 105 (111)
T ss_dssp HHHHT-SSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES-SSEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-cCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec-CcEEEEECccHHHHHHHHHHHHHHHHH
Confidence 34454 33444 89999999 9999999999999999999999999 9999999997 56666666553
No 65
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=94.87 E-value=0.061 Score=41.04 Aligned_cols=66 Identities=14% Similarity=0.159 Sum_probs=51.6
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcce-----eeeCCCceEEEcHHHHHHHHHHHH
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSG-----VMDDRGKYIYISQAEMKAVADYIK 212 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTG-----ViDDRGKFIYIS~EEm~aVA~fI~ 212 (251)
..+.+| .+.-+...+||..+|++.+-+-..|+.|++.|-|.- --|-|.++|++|+.-...+.....
T Consensus 42 ~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~~~~~~ 112 (151)
T 3kp7_A 42 HVLNML-SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIKERKA 112 (151)
T ss_dssp HHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHHHHHHH
T ss_pred HHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHHHHHHH
Confidence 356677 788899999999999999999999999999999995 245689999999987766655443
No 66
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=94.86 E-value=0.061 Score=40.62 Aligned_cols=67 Identities=12% Similarity=0.184 Sum_probs=48.7
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee---CCCceEEEcHHHHHHHHHHHH
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYIK 212 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD---DRGKFIYIS~EEm~aVA~fI~ 212 (251)
..+.+|..+.-+...+||..+|++.+-+-..|+.|++.|-|+-.-| -|.++|++|+.-...+.....
T Consensus 41 ~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~~ 110 (142)
T 3ech_A 41 HVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLHAEL 110 (142)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHHHHHH
Confidence 4667777778899999999999999999999999999999998765 388999999987766655443
No 67
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=94.85 E-value=0.15 Score=39.94 Aligned_cols=65 Identities=12% Similarity=0.104 Sum_probs=54.7
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee---CCCceEEEcHHHHHHHHHH
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADY 210 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD---DRGKFIYIS~EEm~aVA~f 210 (251)
..+.+|..+.-+...+||..+|++.+-+-..|+.|++.|-|+-.-| -|.++|++|+.-...+...
T Consensus 49 ~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~ 116 (168)
T 2nyx_A 49 RTLVILSNHGPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQV 116 (168)
T ss_dssp HHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHH
Confidence 3566676777799999999999999999999999999999998765 4788999999876665543
No 68
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=94.83 E-value=0.082 Score=40.27 Aligned_cols=60 Identities=10% Similarity=0.152 Sum_probs=49.0
Q ss_pred HHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceee---eCCCceEEEcHHHHHH
Q 025511 147 FVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVM---DDRGKYIYISQAEMKA 206 (251)
Q Consensus 147 FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGVi---DDRGKFIYIS~EEm~a 206 (251)
.+.+|..+.-+...+||..+|++..-+-..|+.|++.|-|.-.- |-|.++|++|+.-...
T Consensus 52 iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~ 114 (153)
T 2pex_A 52 VMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRAL 114 (153)
T ss_dssp HHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHG
T ss_pred HHHHHHhCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHH
Confidence 56677777788999999999999999999999999999999876 4488899999976543
No 69
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=94.80 E-value=0.12 Score=42.10 Aligned_cols=74 Identities=15% Similarity=0.267 Sum_probs=59.7
Q ss_pred HHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCccee---eeCC--Cc---eEEE--cHH--------HHHH
Q 025511 145 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGV---MDDR--GK---YIYI--SQA--------EMKA 206 (251)
Q Consensus 145 ~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGV---iDDR--GK---FIYI--S~E--------Em~a 206 (251)
...+..+..+--+...+||..+|++..-|..||+.|++.|.|.|+ +|.+ |. ||.| ++. .++.
T Consensus 20 ~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~~~~~d~~~lG~~~a~v~v~~~~~~~~~f~~~~~~~ 99 (171)
T 2ia0_A 20 RNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQERGVIERYTIILGEQLKPKHLALIVLEVGKPVIEDFLERYISY 99 (171)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTTTSCSEEEEEEEEESCC--CHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecccCCHHHhhcceEEEEEEECCccccccchhHHHH
Confidence 367788888888999999999999999999999999999999764 4543 42 5444 444 7899
Q ss_pred HHHHHHhcCCcc
Q 025511 207 VADYIKRQGRVS 218 (251)
Q Consensus 207 VA~fI~qrGRVS 218 (251)
++..|...-.|.
T Consensus 100 ~~~~l~~~peV~ 111 (171)
T 2ia0_A 100 ISSTLSALPGVL 111 (171)
T ss_dssp HHHHHHTSTTEE
T ss_pred HHHHHHCCCCeE
Confidence 999998876664
No 70
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=94.78 E-value=0.25 Score=38.31 Aligned_cols=66 Identities=14% Similarity=0.167 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHH
Q 025511 142 DLLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADY 210 (251)
Q Consensus 142 ~lL~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~f 210 (251)
..+..+..+|....-+...+||..+|++..-+-..|+.|++.|-|.- .+|+.+|+|+.-...+...
T Consensus 40 ~~~~~i~~~l~~~~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r---~~~~~~~lT~~g~~~~~~~ 105 (155)
T 2h09_A 40 DYVELISDLIREVGEARQVDMAARLGVSQPTVAKMLKRLATMGLIEM---IPWRGVFLTAEGEKLAQES 105 (155)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEE---ETTTEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEE---ecCCceEEChhHHHHHHHH
Confidence 34455555666666778899999999999999999999999986543 2568899999876554443
No 71
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=94.71 E-value=0.13 Score=39.21 Aligned_cols=67 Identities=9% Similarity=0.166 Sum_probs=54.0
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceee---eCCCceEEEcHHHHHHHHHHHH
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVM---DDRGKYIYISQAEMKAVADYIK 212 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGVi---DDRGKFIYIS~EEm~aVA~fI~ 212 (251)
..+.+|..+.-+...+||..+|++..-+-..|+.|++.|-|+-.- |-|.++|++|+.-...+.....
T Consensus 47 ~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~ 116 (155)
T 3cdh_A 47 RVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAESLVA 116 (155)
T ss_dssp HHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHHHHHHH
Confidence 356677777788999999999999999999999999999998765 4578999999987766665443
No 72
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=94.69 E-value=0.16 Score=38.58 Aligned_cols=66 Identities=11% Similarity=0.107 Sum_probs=53.8
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcce--eee---CCCceEEEcHHHHHHHHHHH
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSG--VMD---DRGKYIYISQAEMKAVADYI 211 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTG--ViD---DRGKFIYIS~EEm~aVA~fI 211 (251)
..+.+|..+.-+...+||..+|++.+-+-..|+.|++.|-|+- .-| -|.++|++|+.-...+....
T Consensus 45 ~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~~~~ 115 (154)
T 2qww_A 45 AMINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSKRST 115 (154)
T ss_dssp HHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHHHHH
Confidence 3566777778899999999999999999999999999999987 544 46789999998876655544
No 73
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=94.64 E-value=0.08 Score=40.40 Aligned_cols=63 Identities=13% Similarity=0.149 Sum_probs=51.3
Q ss_pred HHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHH
Q 025511 147 FVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADY 210 (251)
Q Consensus 147 FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~f 210 (251)
.+.++... -....+||..+|++..-+-..|+.|++.|-|...-|.|+.|.++|++.+..+...
T Consensus 26 IL~~L~~~-~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~~~~~~~~ 88 (118)
T 2jsc_A 26 ILVALLDG-VCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYEGRQVRYALADSHLARALGE 88 (118)
T ss_dssp HHHHHHTT-CCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEECSSSEEEEESSHHHHHHHHH
T ss_pred HHHHHHcC-CCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEECCEEEEEEChHHHHHHHHH
Confidence 44556543 4677899999999999999999999999999988888888999999876655444
No 74
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=94.61 E-value=0.076 Score=39.94 Aligned_cols=62 Identities=10% Similarity=0.172 Sum_probs=52.2
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee---CCCceEEEcHHHHHHH
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAV 207 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD---DRGKFIYIS~EEm~aV 207 (251)
..+.+|..+.-+...+||..+|++..-+-.-|+.|++.|-|.-.-| -|.++|++|+.-...+
T Consensus 44 ~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~ 108 (147)
T 1z91_A 44 LALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLK 108 (147)
T ss_dssp HHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGG
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHH
Confidence 3566777777889999999999999999999999999999987765 4899999999865433
No 75
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=94.61 E-value=0.15 Score=39.37 Aligned_cols=64 Identities=16% Similarity=0.202 Sum_probs=53.7
Q ss_pred HHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHH
Q 025511 148 VEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIK 212 (251)
Q Consensus 148 I~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~ 212 (251)
+.++.. .-..+.+||..+|++..-+-..|+.|++.|.+...-+.|+.|.+++++.+..++..+.
T Consensus 52 L~~L~~-~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~gr~~~y~l~~~~l~~~~~~l~ 115 (122)
T 1r1t_A 52 LSLLAR-SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQDHHIVALYQNAL 115 (122)
T ss_dssp HHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHHHHHH
Confidence 444543 4567889999999999999999999999999999888888899999998887776654
No 76
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=94.60 E-value=0.17 Score=37.86 Aligned_cols=65 Identities=15% Similarity=0.273 Sum_probs=52.1
Q ss_pred HHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHH
Q 025511 147 FVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIK 212 (251)
Q Consensus 147 FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~ 212 (251)
.+.++.. .-..+.+||..+|++..-+-..|+.|++.|.+.-.-|.|+.|..++...+..++.-+.
T Consensus 37 il~~L~~-~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~~~~~r~~~~~~~~~~~~~~~~~~~ 101 (119)
T 2lkp_A 37 ILTQLRN-GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGDRAGRSIVYSLYDTHVAQLLDEAI 101 (119)
T ss_dssp HHHHHHH-CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEEEETTEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHH-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEchHHHHHHHHHHH
Confidence 3445555 4678999999999999999999999999999988778888888888777766655543
No 77
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=94.57 E-value=0.045 Score=41.65 Aligned_cols=67 Identities=24% Similarity=0.349 Sum_probs=46.7
Q ss_pred HHHHHHHhc--CccchHhHHhHcCCChHHHHHHHHHHHhcCCcceee---eCCCceEEEcHHHHHHHHHHHH
Q 025511 146 DFVEYIKKH--KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVM---DDRGKYIYISQAEMKAVADYIK 212 (251)
Q Consensus 146 ~FI~YIK~~--KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGVi---DDRGKFIYIS~EEm~aVA~fI~ 212 (251)
..+.+|..+ .-+...+||..+|++.+-+-.-|+.|++.|-|+-.- |-|.++|++|+.-...+.....
T Consensus 45 ~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~~ 116 (148)
T 3jw4_A 45 RMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEFNN 116 (148)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHHHHHHH
Confidence 356677766 678999999999999999999999999999999876 4589999999988766655443
No 78
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=94.56 E-value=0.21 Score=37.30 Aligned_cols=54 Identities=11% Similarity=0.136 Sum_probs=45.4
Q ss_pred HHHHHhcCccchHhHHhHc-CCChHHHHHHHHHHHhcCCcceeeeC---CCceEEEcHH
Q 025511 148 VEYIKKHKCIPLEDLAAEF-KLRTQECINRITSLENMGRLSGVMDD---RGKYIYISQA 202 (251)
Q Consensus 148 I~YIK~~KVV~LEDLAa~F-gLrTqdvI~RIq~Lea~G~LTGViDD---RGKFIYIS~E 202 (251)
+.++. ..-....|||..+ |++..-+-.+|+.|++.|-|+...|. |..++++|+.
T Consensus 20 L~~L~-~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~ 77 (107)
T 2hzt_A 20 LXHLT-HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEY 77 (107)
T ss_dssp HHHHT-TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTT
T ss_pred HHHHH-hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECcc
Confidence 44454 4557789999999 99999999999999999999998873 5678899985
No 79
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=94.55 E-value=0.18 Score=36.56 Aligned_cols=66 Identities=11% Similarity=0.062 Sum_probs=52.9
Q ss_pred HHHHHHhcC-ccchHhHHhHcCCChHH-HHHHHHHHHhcCCcce-eeeCCCceEEEcHHHHHHHHHHHH
Q 025511 147 FVEYIKKHK-CIPLEDLAAEFKLRTQE-CINRITSLENMGRLSG-VMDDRGKYIYISQAEMKAVADYIK 212 (251)
Q Consensus 147 FI~YIK~~K-VV~LEDLAa~FgLrTqd-vI~RIq~Lea~G~LTG-ViDDRGKFIYIS~EEm~aVA~fI~ 212 (251)
.+.++..+. -+...+||..+|++..- +-..|+.|++.|-|.- --|-|.++|++|+.-...+.....
T Consensus 20 ~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~~~~~~~ 88 (95)
T 2pg4_A 20 TLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRLAECLEK 88 (95)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHHHHHHHH
Confidence 445566665 78999999999999999 8999999999999981 123488999999988776665544
No 80
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=94.52 E-value=0.09 Score=39.49 Aligned_cols=54 Identities=17% Similarity=0.277 Sum_probs=48.0
Q ss_pred HHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEc
Q 025511 147 FVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYIS 200 (251)
Q Consensus 147 FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS 200 (251)
...|++--+.+.|+.||..|||+.+++-.-|-.|..+|+|.|.||.-...|...
T Consensus 21 l~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~ 74 (84)
T 1ufm_A 21 LLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFE 74 (84)
T ss_dssp HHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEEC
T ss_pred HHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEeC
Confidence 335788899999999999999999999999999999999999999976666554
No 81
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=94.49 E-value=0.15 Score=40.23 Aligned_cols=67 Identities=18% Similarity=0.209 Sum_probs=52.5
Q ss_pred HHHHHHHh-cCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceee---eCCCceEEEcHHHHHHHHHHHH
Q 025511 146 DFVEYIKK-HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVM---DDRGKYIYISQAEMKAVADYIK 212 (251)
Q Consensus 146 ~FI~YIK~-~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGVi---DDRGKFIYIS~EEm~aVA~fI~ 212 (251)
..+.+|.. ..-+...|||..+|++..-+-..|+.|++.|-|+-.- |-|.++|++|+.-...+.....
T Consensus 57 ~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~~ 127 (166)
T 3deu_A 57 VTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEMEE 127 (166)
T ss_dssp HHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHHHHHH
Confidence 35666766 5668999999999999999999999999999999877 5588999999987776665544
No 82
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=94.36 E-value=0.09 Score=40.22 Aligned_cols=66 Identities=14% Similarity=0.207 Sum_probs=51.6
Q ss_pred HHHHHH-HhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceee---eCCCceEEEcHHHHHHHHHHH
Q 025511 146 DFVEYI-KKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVM---DDRGKYIYISQAEMKAVADYI 211 (251)
Q Consensus 146 ~FI~YI-K~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGVi---DDRGKFIYIS~EEm~aVA~fI 211 (251)
..+.+| ..+.-+...+||..+|++..-+-..|+.|++.|-|+-.- |-|.++|++|+.-...+....
T Consensus 51 ~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 120 (160)
T 3boq_A 51 DAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFKQAS 120 (160)
T ss_dssp HHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHHHHHH
Confidence 356677 456779999999999999999999999999999998765 458899999998776665543
No 83
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=94.29 E-value=0.077 Score=38.71 Aligned_cols=43 Identities=19% Similarity=0.485 Sum_probs=39.1
Q ss_pred HHHHHHHHhcC-ccchHhHHhHcCCChHHHHHHHHHHHhcCCcc
Q 025511 145 ADFVEYIKKHK-CIPLEDLAAEFKLRTQECINRITSLENMGRLS 187 (251)
Q Consensus 145 ~~FI~YIK~~K-VV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LT 187 (251)
++.++||+.+. ++.+.+.|..||++.++|.+-+..|++-|-|.
T Consensus 13 ~~lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 13 RELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 46789999877 88899999999999999999999999999763
No 84
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=94.28 E-value=0.073 Score=38.88 Aligned_cols=53 Identities=13% Similarity=0.213 Sum_probs=45.8
Q ss_pred HHHHHHHHhcC---ccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceE
Q 025511 145 ADFVEYIKKHK---CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYI 197 (251)
Q Consensus 145 ~~FI~YIK~~K---VV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFI 197 (251)
...+.+++.+- -+...+||..+|++...|-.+|..|+..|.|.++-+..|.|.
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~~~~W~ 72 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWK 72 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSSSCEEE
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCceE
Confidence 45677888887 899999999999999999999999999999999876666653
No 85
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=94.28 E-value=0.19 Score=38.78 Aligned_cols=80 Identities=14% Similarity=0.154 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHH----HHHHhcCCcc
Q 025511 143 LLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVA----DYIKRQGRVS 218 (251)
Q Consensus 143 lL~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA----~fI~qrGRVS 218 (251)
+.+..+..+.. .-....|||..||+....+.+-++.|...|.|+-|-+| +|++++-+...+ .++...|.+|
T Consensus 8 l~~~i~~~~~~-~p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~i~~~----~~~~~~~~~~~~~~l~~~~~~~~~it 82 (121)
T 2pjp_A 8 IWQKAEPLFGD-EPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIVKD----RYYRNDRIVEFANMIRDLDQECGSTC 82 (121)
T ss_dssp HHHHHGGGCSS-SCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEETT----EEEEHHHHHHHHHHHHHHHHHHSSEE
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecCC----ceECHHHHHHHHHHHHHHHHHCCCcc
Confidence 33444444432 33467799999999999999999999999999999876 688887776655 4555689999
Q ss_pred HHHHHhhcc
Q 025511 219 ISHLASKSN 227 (251)
Q Consensus 219 isELa~~sN 227 (251)
++++-...|
T Consensus 83 ~ae~Rd~lg 91 (121)
T 2pjp_A 83 AADFRDRLG 91 (121)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHC
Confidence 998887764
No 86
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.17 E-value=0.091 Score=48.27 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHH
Q 025511 143 LLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQA 202 (251)
Q Consensus 143 lL~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~E 202 (251)
....++.|++--+.|.|+.+|..||++.+++=+-|-.|..+|+|.|-||-=.+-|+....
T Consensus 334 r~~~l~q~~~~Ys~I~l~~mA~~l~~s~~~~E~~L~~lI~~g~l~akID~~~giv~~~~~ 393 (429)
T 4b4t_R 334 RRKVYAQLLESYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRP 393 (429)
T ss_dssp HHHHHHHHHHTCSEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECC-
T ss_pred HHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHcCCeEEEEcCCCCEEEECCC
Confidence 466788899999999999999999999999999999999999999999998888888643
No 87
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=94.02 E-value=0.3 Score=39.40 Aligned_cols=66 Identities=14% Similarity=0.140 Sum_probs=54.8
Q ss_pred HHHHHHHh--cCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee---CCCceEEEcHHHHHHHHHHH
Q 025511 146 DFVEYIKK--HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYI 211 (251)
Q Consensus 146 ~FI~YIK~--~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD---DRGKFIYIS~EEm~aVA~fI 211 (251)
..+.+|.. ..-+...+||..+|++.+-+-..|+.|++.|-|+-.-| -|.++|++|+.-...+....
T Consensus 45 ~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 115 (189)
T 3nqo_A 45 MTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVTCS 115 (189)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHHH
Confidence 35566765 45789999999999999999999999999999998876 37899999998766655444
No 88
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.02 E-value=0.09 Score=49.17 Aligned_cols=59 Identities=10% Similarity=0.231 Sum_probs=52.8
Q ss_pred HHHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHH
Q 025511 144 LADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQA 202 (251)
Q Consensus 144 L~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~E 202 (251)
....+.|++.-..|.|.++|..||++++++=.-|-.|..+|+|.|.||.-...|++++.
T Consensus 304 ~~~L~~i~~pYsrIsl~~iA~~l~ls~~evE~~L~~lI~dg~I~a~IDq~~giv~~~~~ 362 (394)
T 3txn_A 304 EQNLCRIIEPYSRVQVAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEE 362 (394)
T ss_dssp HHHHHHHHTTCSEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCC
T ss_pred HHHHHHHhHhhceeeHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEEcCCCCEEEECCC
Confidence 34455577888999999999999999999999999999999999999999999999765
No 89
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=93.90 E-value=0.53 Score=33.32 Aligned_cols=63 Identities=24% Similarity=0.316 Sum_probs=47.3
Q ss_pred HHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeC---CC---ceEEEcHHHHHHHHHHHH
Q 025511 150 YIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDD---RG---KYIYISQAEMKAVADYIK 212 (251)
Q Consensus 150 YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDD---RG---KFIYIS~EEm~aVA~fI~ 212 (251)
.+..+.-+...|||..+|++..-+-..|+.|++.|-|...-+. +| .++.++++-+..+..++.
T Consensus 30 l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~~~~~gr~~~~~~l~~~~~~~~~~~~~ 98 (109)
T 2d1h_A 30 MVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGKKIGRPKYYYSISSNILEKIRNDLL 98 (109)
T ss_dssp HHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-------CCEEEEECTTHHHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccccCCCCCCCeeeecCHHHHHHHHHHHH
Confidence 3444677899999999999999999999999999999987653 13 356688855555555443
No 90
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=93.81 E-value=0.21 Score=38.00 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=48.4
Q ss_pred HHHHHHhc-CccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee---CCCceEEEcHHHHHHHHHHHH
Q 025511 147 FVEYIKKH-KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYIK 212 (251)
Q Consensus 147 FI~YIK~~-KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD---DRGKFIYIS~EEm~aVA~fI~ 212 (251)
.+.+|..+ .-+...+||..+|++.+-+-..|+.|++.|-|+-.-| -|.++|++|+.-...+.....
T Consensus 44 vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~ 113 (150)
T 3fm5_A 44 VLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDDAKA 113 (150)
T ss_dssp HHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHHHHHH
Confidence 45566544 3689999999999999999999999999999987654 488999999988777666544
No 91
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=93.36 E-value=0.51 Score=35.08 Aligned_cols=55 Identities=11% Similarity=0.080 Sum_probs=45.5
Q ss_pred HHHHHhcCccchHhHHhHc-CCChHHHHHHHHHHHhcCCcceeeeC---CCceEEEcHHH
Q 025511 148 VEYIKKHKCIPLEDLAAEF-KLRTQECINRITSLENMGRLSGVMDD---RGKYIYISQAE 203 (251)
Q Consensus 148 I~YIK~~KVV~LEDLAa~F-gLrTqdvI~RIq~Lea~G~LTGViDD---RGKFIYIS~EE 203 (251)
+.++. ..-....+||..+ |++..-+-..++.|++.|-|....|+ |..++++|+.-
T Consensus 31 L~~L~-~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G 89 (107)
T 2fsw_A 31 IFQIN-RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLG 89 (107)
T ss_dssp HHHHT-TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHH
T ss_pred HHHHH-hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECccH
Confidence 34454 4557889999999 59999999999999999999998874 56789999964
No 92
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=93.29 E-value=0.39 Score=39.75 Aligned_cols=71 Identities=11% Similarity=0.110 Sum_probs=58.5
Q ss_pred HHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee---CCCceEEEcHHHHHHHHHHHHhcCCc
Q 025511 147 FVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYIKRQGRV 217 (251)
Q Consensus 147 FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD---DRGKFIYIS~EEm~aVA~fI~qrGRV 217 (251)
.+.+|..+.-+...+||..+|++.+-+-..|+.|++.|-|+-.-| -|-++|++|+.-...+.........+
T Consensus 53 iL~~L~~~~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~~~~~ 126 (207)
T 2fxa_A 53 ILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFWSLLEEFDPT 126 (207)
T ss_dssp HHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHHHHHHHHHHHH
Confidence 455666667789999999999999999999999999999999876 47889999999998888877665544
No 93
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=93.27 E-value=0.55 Score=35.25 Aligned_cols=56 Identities=7% Similarity=0.051 Sum_probs=47.1
Q ss_pred HHHHHhcCccchHhHHhHc-CCChHHHHHHHHHHHhcCCcceeeeC---CCceEEEcHHHH
Q 025511 148 VEYIKKHKCIPLEDLAAEF-KLRTQECINRITSLENMGRLSGVMDD---RGKYIYISQAEM 204 (251)
Q Consensus 148 I~YIK~~KVV~LEDLAa~F-gLrTqdvI~RIq~Lea~G~LTGViDD---RGKFIYIS~EEm 204 (251)
+.++.. .-+...+||..+ |++..-+-.+|+.|++.|-|....|. |.+++++|+.-.
T Consensus 28 L~~L~~-~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~ 87 (112)
T 1z7u_A 28 MDELFQ-GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGY 87 (112)
T ss_dssp HHHHHH-SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHH
T ss_pred HHHHHh-CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHH
Confidence 444554 457899999999 99999999999999999999998873 678899999754
No 94
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=93.15 E-value=0.56 Score=35.41 Aligned_cols=64 Identities=13% Similarity=0.265 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHH
Q 025511 143 LLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADY 210 (251)
Q Consensus 143 lL~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~f 210 (251)
.|..+......+.-+.+.+||..+|++..-+-..|+.|++.|-|.-.- +.+++|+.-...+...
T Consensus 18 ~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~~----~~~~Lt~~g~~~~~~~ 81 (139)
T 2x4h_A 18 YLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKKE----DGVWITNNGTRSINYL 81 (139)
T ss_dssp HHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET----TEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEecC----CeEEEChhHHHHHHHH
Confidence 344444444456788999999999999999999999999998876532 6799999766544333
No 95
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=92.98 E-value=0.35 Score=37.59 Aligned_cols=66 Identities=14% Similarity=0.190 Sum_probs=52.2
Q ss_pred HHHHHHh--cCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee---CCCceEEEcHHHHHHHHHHHH
Q 025511 147 FVEYIKK--HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYIK 212 (251)
Q Consensus 147 FI~YIK~--~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD---DRGKFIYIS~EEm~aVA~fI~ 212 (251)
.+.+|.. ..-+...+||..+|++.+-+-..|+.|++.|-|+-.-| -|.++|++|+.-...+.....
T Consensus 51 vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~ 121 (168)
T 3u2r_A 51 TLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLLKDLEE 121 (168)
T ss_dssp HHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHHHHHHH
Confidence 4566666 35889999999999999999999999999999998876 378899999987766665544
No 96
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=92.94 E-value=0.28 Score=36.50 Aligned_cols=59 Identities=12% Similarity=0.166 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcC---ccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHH
Q 025511 144 LADFVEYIKKHK---CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQA 202 (251)
Q Consensus 144 L~~FI~YIK~~K---VV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~E 202 (251)
-...+++|+.+. -+...+||..+|++...|-.+|..|+.+|.|.=+-...|.|.-.++.
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~~~~~W~i~~~~ 73 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWKIAVST 73 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESSSSCEEEEC---
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCeeEEeCcH
Confidence 355778888888 89999999999999999999999999999996443445666544444
No 97
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=92.87 E-value=0.3 Score=36.03 Aligned_cols=62 Identities=13% Similarity=0.228 Sum_probs=52.5
Q ss_pred HHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHH
Q 025511 150 YIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIK 212 (251)
Q Consensus 150 YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~ 212 (251)
++..+.-....+||..+|++..-+-..++.|+.. -+..--+.|..|.+++++.+..+..++.
T Consensus 35 ~l~~~~~~~~~ela~~l~is~stvs~hL~~L~~~-lv~~~~~gr~~~y~l~~~~~~~~~~~l~ 96 (99)
T 2zkz_A 35 ELYKHKALNVTQIIQILKLPQSTVSQHLCKMRGK-VLKRNRQGLEIYYSINNPKVEGIIKLLN 96 (99)
T ss_dssp HHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEEEETTEEEEECCCHHHHHHHHHHC
T ss_pred HHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhheEeCcEEEEEEChHHHHHHHHHHH
Confidence 3444555788999999999999999999999999 8888877777788899999999888874
No 98
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=92.42 E-value=0.81 Score=36.23 Aligned_cols=56 Identities=11% Similarity=0.096 Sum_probs=45.7
Q ss_pred HHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee--CCCceEEEcHHH
Q 025511 147 FVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD--DRGKYIYISQAE 203 (251)
Q Consensus 147 FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD--DRGKFIYIS~EE 203 (251)
.+.++. ..-....|||..+|++..-+-.+|+.|++.|-|+...+ |+..++++|+.-
T Consensus 29 IL~~L~-~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~G 86 (146)
T 2f2e_A 29 IVRDAF-EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKG 86 (146)
T ss_dssp HHHHHH-TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHH
T ss_pred HHHHHH-hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEECchH
Confidence 344554 45678999999999999999999999999999999987 454566689853
No 99
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=92.31 E-value=0.66 Score=36.38 Aligned_cols=54 Identities=13% Similarity=0.084 Sum_probs=45.5
Q ss_pred HHHHhcCccchHhHHhHc-CCChHHHHHHHHHHHhcCCcceeeeC---CCceEEEcHHH
Q 025511 149 EYIKKHKCIPLEDLAAEF-KLRTQECINRITSLENMGRLSGVMDD---RGKYIYISQAE 203 (251)
Q Consensus 149 ~YIK~~KVV~LEDLAa~F-gLrTqdvI~RIq~Lea~G~LTGViDD---RGKFIYIS~EE 203 (251)
.++. ..-....+||..+ |++..-+-.+++.|++.|-|+-..|. |..++++|+.-
T Consensus 42 ~~L~-~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G 99 (131)
T 1yyv_A 42 VALR-DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLG 99 (131)
T ss_dssp HHGG-GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHH
T ss_pred HHHH-cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccH
Confidence 3444 4556788999999 79999999999999999999998874 67799999964
No 100
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.29 E-value=0.21 Score=42.20 Aligned_cols=73 Identities=14% Similarity=0.376 Sum_probs=48.1
Q ss_pred HHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHH-----HHHHHHHHHHhcCCc
Q 025511 145 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQA-----EMKAVADYIKRQGRV 217 (251)
Q Consensus 145 ~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~E-----Em~aVA~fI~qrGRV 217 (251)
..+..+++--+-+.|.++|..||++.+++-.-|-.|..+|.|.|.||.--..|.+.+. -++.+...|++-|+|
T Consensus 345 ~~l~~~~~~y~~i~l~~la~~l~~~~~~~E~~l~~lI~~~~i~a~id~~~g~v~~~~~~~~~~~~~~~l~~~~~l~~~ 422 (434)
T 4b4t_Q 345 SNLCKIIEPFECVEISHISKIIGLDTQQVEGKLSQMILDKIFYGVLDQGNGWLYVYETPNQDATYDSALELVGQLNKV 422 (434)
T ss_dssp HHHHHHHSSCSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSSCCEEETTTTEEECC----------------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHhCcCHHHHHHHHHHHHhCCCcceecccccCeEeeCCCcchhHHHHHHHHHHHHHHHH
Confidence 3455567777889999999999999999999999999999999999987666766432 234444555544443
No 101
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=92.27 E-value=0.56 Score=38.36 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=40.1
Q ss_pred HHHHHHHHHHh-cCccchHhHHhHcCCChHHHHHHHHHHHhcCC-cce
Q 025511 143 LLADFVEYIKK-HKCIPLEDLAAEFKLRTQECINRITSLENMGR-LSG 188 (251)
Q Consensus 143 lL~~FI~YIK~-~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~-LTG 188 (251)
.....+.+++. .+.+...+||..||++..-+-.+|+.|++.|. |.|
T Consensus 22 R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~~ 69 (187)
T 1j5y_A 22 RLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVA 69 (187)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 35667888886 46799999999999999999999999999998 764
No 102
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=92.15 E-value=0.21 Score=37.93 Aligned_cols=50 Identities=8% Similarity=0.203 Sum_probs=44.3
Q ss_pred CchhHHHHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCccee
Q 025511 139 GDRDLLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGV 189 (251)
Q Consensus 139 ~sq~lL~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGV 189 (251)
+..+...+.+++++.+= ...-+||.++|++.+.|-.+|..|+.+|.|.-.
T Consensus 14 ~~~~~~~~IL~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~ 63 (82)
T 1oyi_A 14 SNAEIVCEAIKTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVYSS 63 (82)
T ss_dssp CSHHHHHHHHHHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEC
T ss_pred chHHHHHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeC
Confidence 45677888999999766 999999999999999999999999999998654
No 103
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=92.03 E-value=0.34 Score=36.92 Aligned_cols=54 Identities=15% Similarity=0.236 Sum_probs=42.8
Q ss_pred CccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee-CCCceEE-EcHHHHHHHH
Q 025511 155 KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD-DRGKYIY-ISQAEMKAVA 208 (251)
Q Consensus 155 KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD-DRGKFIY-IS~EEm~aVA 208 (251)
++....+||..||++..-|-+.|+.|+++|.|.-+-. -+|-||. ++++++..+.
T Consensus 42 ~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~gG~~G~~V~~~~~~~~~~~~ 97 (102)
T 2b0l_A 42 GLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYIKVLNNKFLIELE 97 (102)
T ss_dssp EEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSCEEEEECCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeCCCCcEEEecCCHHHHHHHH
Confidence 4458899999999999999999999999999876554 4787775 4566665544
No 104
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=91.61 E-value=0.44 Score=35.60 Aligned_cols=58 Identities=12% Similarity=0.202 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHhcCccchHhHHhHcCCChH-HHHHHHHHHHhcCCcceeeeCCCceEE-EcH
Q 025511 142 DLLADFVEYIKKHKCIPLEDLAAEFKLRTQ-ECINRITSLENMGRLSGVMDDRGKYIY-ISQ 201 (251)
Q Consensus 142 ~lL~~FI~YIK~~KVV~LEDLAa~FgLrTq-dvI~RIq~Lea~G~LTGViDDRGKFIY-IS~ 201 (251)
+.-...+.|+|.+.=+..-+||..+|+++. .|-.-+..|+++|.|.-. ++|.-+| +|+
T Consensus 11 ~~~~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~~--~~gRP~w~LT~ 70 (79)
T 1xmk_A 11 EIKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQ--GTTPPIWHLTD 70 (79)
T ss_dssp HHHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEE--CSSSCEEEECH
T ss_pred hHHHHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEec--CCCCCCeEeCH
Confidence 344678899999999999999999999999 999999999999999732 4554443 443
No 105
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=91.48 E-value=1.1 Score=38.85 Aligned_cols=83 Identities=18% Similarity=0.317 Sum_probs=68.9
Q ss_pred hhHHHHHHHHHHhcCcc--chHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHh---cC
Q 025511 141 RDLLADFVEYIKKHKCI--PLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKR---QG 215 (251)
Q Consensus 141 q~lL~~FI~YIK~~KVV--~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~q---rG 215 (251)
+.+.+......+..... .+.||+..+|+...++.+-+..|...|.|+-|-+| +|++++-+..++.-|+. .|
T Consensus 140 ~~~~~~i~~~~~~~g~~pp~~~dl~~~l~~~~~~~~~~l~~l~~~g~lv~l~~~----~~~~~~~~~~~~~~l~~~~~~~ 215 (258)
T 1lva_A 140 KKLLKDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLVKINDE----FYWHRQALGEAREVIKNLASTG 215 (258)
T ss_dssp HHHHHHHHHHHHHHTTSCCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEESSSS----BEEEHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHhHhCCCHHHHHHHHHHHHHCCCEEEecCC----eEEcHHHHHHHHHHHHHHHhcC
Confidence 45567777777777743 58899999999999999999999999999999877 79999998887776665 89
Q ss_pred CccHHHHHhhcc
Q 025511 216 RVSISHLASKSN 227 (251)
Q Consensus 216 RVSisELa~~sN 227 (251)
.+|++++-...|
T Consensus 216 ~it~a~~Rd~lg 227 (258)
T 1lva_A 216 PFGLAEARDALG 227 (258)
T ss_dssp CBCHHHHHHHHT
T ss_pred CcCHHHHHHHhC
Confidence 999988766544
No 106
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=91.12 E-value=0.71 Score=35.47 Aligned_cols=66 Identities=18% Similarity=0.272 Sum_probs=48.2
Q ss_pred HHHHHHHhcCc--cchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee--C-CC-ceEEEcHHHHHHHHHHHH
Q 025511 146 DFVEYIKKHKC--IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD--D-RG-KYIYISQAEMKAVADYIK 212 (251)
Q Consensus 146 ~FI~YIK~~KV--V~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD--D-RG-KFIYIS~EEm~aVA~fI~ 212 (251)
..+.++..+.- +...+||..+|++..-|-..|+.|++.|-|...-+ | +| .|+|.+. ....+...|+
T Consensus 30 ~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~~~~d~~~~~~~y~~~-~~~~~~~~i~ 101 (123)
T 3r0a_A 30 NVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQQNLDGGGYVYIYKIY-SKNQIRNIIQ 101 (123)
T ss_dssp HHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEEC-CHHHHHHHHH
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeCCccCCCcceEEEecC-CHHHHHHHHH
Confidence 35566666655 89999999999999999999999999999987543 4 44 4666542 2444444444
No 107
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=91.00 E-value=1.2 Score=34.83 Aligned_cols=64 Identities=14% Similarity=0.180 Sum_probs=52.3
Q ss_pred HHHHHHh-cCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeC---CCceEEEcHHHHHHHHHH
Q 025511 147 FVEYIKK-HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDD---RGKYIYISQAEMKAVADY 210 (251)
Q Consensus 147 FI~YIK~-~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDD---RGKFIYIS~EEm~aVA~f 210 (251)
.+.+|-. ...+...|||..+|++.+-+-.-|..|++.|-|+=.-|. |.++|++|+.-.+.+...
T Consensus 36 vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~~~ 103 (151)
T 4aik_A 36 TLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIEQV 103 (151)
T ss_dssp HHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHHHH
Confidence 4556644 456777899999999999999999999999999987763 789999999876655443
No 108
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=90.67 E-value=0.25 Score=39.11 Aligned_cols=65 Identities=17% Similarity=0.176 Sum_probs=51.2
Q ss_pred HHHHHHhcCc---cchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee---CCCceEEEcHHHHHHHHHHH
Q 025511 147 FVEYIKKHKC---IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYI 211 (251)
Q Consensus 147 FI~YIK~~KV---V~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD---DRGKFIYIS~EEm~aVA~fI 211 (251)
.+.+|..+.- +...+||..+|++..-+-..|+.|++.|-|+-.-| -|.++|++|+.-...+....
T Consensus 74 iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~~ 144 (181)
T 2fbk_A 74 LLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVTHLL 144 (181)
T ss_dssp HHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHHHHHH
Confidence 5566766654 89999999999999999999999999999998754 47889999998776665543
No 109
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=90.60 E-value=0.9 Score=35.19 Aligned_cols=63 Identities=13% Similarity=0.221 Sum_probs=50.4
Q ss_pred HHHHHh--cCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee---CCCceEEEcHHHHHHHHHH
Q 025511 148 VEYIKK--HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADY 210 (251)
Q Consensus 148 I~YIK~--~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD---DRGKFIYIS~EEm~aVA~f 210 (251)
+.+|.. ..-+...+||..++++.+-+-.-|..|++.|-|+=.-| -|.++|++|+.-.+.+...
T Consensus 41 L~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~ 108 (147)
T 4b8x_A 41 LVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVVEAA 108 (147)
T ss_dssp HHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHHHHH
T ss_pred HHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHHHHH
Confidence 444533 34578899999999999999999999999999998876 3899999999887665543
No 110
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=90.04 E-value=0.46 Score=46.29 Aligned_cols=83 Identities=11% Similarity=0.098 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCC-cceeeeCCCceEEEcHHHH-------------------
Q 025511 145 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGR-LSGVMDDRGKYIYISQAEM------------------- 204 (251)
Q Consensus 145 ~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~-LTGViDDRGKFIYIS~EEm------------------- 204 (251)
...+.||+.+.-+...+||..+|++...+-..|+.|.+.|. -.|++.-.|...++++.=.
T Consensus 433 ~~iL~~l~~~~~it~~~la~~l~~s~~~~~~~L~~L~~~~~~~~glie~~g~~y~L~~~~~~~~~~~~~~~~~~~~~~~~ 512 (583)
T 3lmm_A 433 AIVLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIAHDGVWLLGNACREILRKVEPSPFSPVRYLST 512 (583)
T ss_dssp HHHHHHHHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEEETTEEEECHHHHHHHTSCC------------
T ss_pred HHHHHHHHHCCCcCHHHHHHHhCcCHHHHHHHHHHHHhhhccccceEEEeCCEEEECHHHHHHhcccccccccccccccC
Confidence 35788999999999999999999999999999999999331 1344444466677887511
Q ss_pred ------HHHHHHHHhcCCccHHHHHhhcc
Q 025511 205 ------KAVADYIKRQGRVSISHLASKSN 227 (251)
Q Consensus 205 ------~aVA~fI~qrGRVSisELa~~sN 227 (251)
+.|-+|++..|.+|.+++++.|+
T Consensus 513 ~~~~~~~~I~~~l~~~g~it~~di~~l~~ 541 (583)
T 3lmm_A 513 DQAELTNAAMLWLSEVGDLATSDLMAMCG 541 (583)
T ss_dssp -----------------------------
T ss_pred ChhHHHHHHHHHHHHcCCcCHHHHHHHHC
Confidence 23668999999999999999886
No 111
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=89.68 E-value=0.85 Score=39.67 Aligned_cols=58 Identities=16% Similarity=0.317 Sum_probs=49.7
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHH
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMK 205 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~ 205 (251)
..+.++..+.-+.+.|||..+|++..-+-..|+.|++.|-|... .|++.+++|+.-..
T Consensus 156 ~IL~~L~~~~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~--~r~~~~~LT~~G~~ 213 (244)
T 2wte_A 156 KLLNVLYETKGTGITELAKMLDKSEKTLINKIAELKKFGILTQK--GKDRKVELNELGLN 213 (244)
T ss_dssp HHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTTEEEECHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--CCccEEEECHHHHH
Confidence 45666666667899999999999999999999999999999986 67888999987554
No 112
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=89.63 E-value=1.3 Score=32.67 Aligned_cols=46 Identities=20% Similarity=0.325 Sum_probs=38.1
Q ss_pred cCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeC---CCceEEE
Q 025511 154 HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDD---RGKYIYI 199 (251)
Q Consensus 154 ~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDD---RGKFIYI 199 (251)
+.-+.+.|||..+|++..-+-..|+.|++.|-|+..-|+ |..|+.+
T Consensus 39 ~~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~~~d~r~~~~~~ 87 (152)
T 1ku9_A 39 DKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGERKNYYEAV 87 (152)
T ss_dssp SSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCSSCEEEEC
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCceEEEeec
Confidence 356889999999999999999999999999999998643 3334444
No 113
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=89.10 E-value=2.8 Score=31.66 Aligned_cols=64 Identities=14% Similarity=0.193 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHhcCc------cchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHH
Q 025511 142 DLLADFVEYIKKHKC------IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVA 208 (251)
Q Consensus 142 ~lL~~FI~YIK~~KV------V~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA 208 (251)
.....+.+.|..... -...+||.+||++..-|..-++.|+++|.|.-+ +|+=.||++-..+.+.
T Consensus 13 ~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~---~~~G~~V~~~~~~~~~ 82 (113)
T 3tqn_A 13 QLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKR---RGLGMLVKAGARQRLL 82 (113)
T ss_dssp HHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE---TTTEEEECTTHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe---cCCeEEEeCCchHHHH
Confidence 344566666766554 367899999999999999999999999987543 5666777765544443
No 114
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=88.94 E-value=0.75 Score=36.83 Aligned_cols=60 Identities=18% Similarity=0.225 Sum_probs=47.4
Q ss_pred cCccchHhHHhHcCCChHHHHHHHHHHHhcCCcce--eeeCCCc---eEEEcHHHHHHHHHHHHhc
Q 025511 154 HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSG--VMDDRGK---YIYISQAEMKAVADYIKRQ 214 (251)
Q Consensus 154 ~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTG--ViDDRGK---FIYIS~EEm~aVA~fI~qr 214 (251)
..-...++||..+|++..+|.+.|+.|++.|-|+= ..|..|+ ++++|| =+++++.++.+.
T Consensus 49 ~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL~p-L~ekL~~~~~~~ 113 (135)
T 2v79_A 49 SYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQP-LWGKLYEYIQLA 113 (135)
T ss_dssp CCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEECHH-HHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEeeHHH-HHHHHHHHHHHH
Confidence 35578999999999999999999999999999885 5577675 555555 366777776544
No 115
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=88.82 E-value=0.81 Score=40.76 Aligned_cols=45 Identities=11% Similarity=0.151 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcc
Q 025511 143 LLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLS 187 (251)
Q Consensus 143 lL~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LT 187 (251)
.....+.++..+..+..++||.+||++..-+-..|+.|++.|.+.
T Consensus 6 r~~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~i 50 (321)
T 1bia_A 6 VPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDV 50 (321)
T ss_dssp HHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCcE
Confidence 356678888888999999999999999999999999999998765
No 116
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=88.71 E-value=0.88 Score=32.93 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=41.2
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHH
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQA 202 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~E 202 (251)
..+.+| +.-+...|||..+|++..-+-..|+.|++.|-|.-.- | +.++++.
T Consensus 35 ~Il~~L--~~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~---g-~y~l~~~ 85 (96)
T 1y0u_A 35 KILRML--DKGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG---E-RWVVTDA 85 (96)
T ss_dssp HHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET---T-EEEECTT
T ss_pred HHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC---C-EEEECCC
Confidence 355566 3457899999999999999999999999999998643 6 6777764
No 117
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=87.65 E-value=1.7 Score=36.42 Aligned_cols=66 Identities=15% Similarity=0.133 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHH
Q 025511 144 LADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIK 212 (251)
Q Consensus 144 L~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~ 212 (251)
|.........+.-+...|||..+|++..-+-..|+.|++.|-|+=.- .+.|++|+.-.......++
T Consensus 8 L~~I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~---~~~i~LT~~G~~~~~~~~~ 73 (214)
T 3hrs_A 8 LKCLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDK---KAGYLLTDLGLKLVSDLYR 73 (214)
T ss_dssp HHHHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET---TTEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEec---CCCeEECHHHHHHHHHHHH
Confidence 33333333456678899999999999999999999999999886543 3789999998776555444
No 118
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=87.58 E-value=2.6 Score=35.11 Aligned_cols=67 Identities=13% Similarity=0.226 Sum_probs=49.9
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceee---eCC--------CceEE-EcHH----HHHHHHH
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVM---DDR--------GKYIY-ISQA----EMKAVAD 209 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGVi---DDR--------GKFIY-IS~E----Em~aVA~ 209 (251)
..+.++. ..-+...+||..+|++..-|-.+|+.|++.|-|.+.- +-+ .-++| |+.. .+..++.
T Consensus 24 ~IL~~L~-~~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~~~~ 102 (192)
T 1uly_A 24 KILKLLR-NKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVKRTEMKGNLVEKYYGRTADVFYINLYLGDEELRYIAR 102 (192)
T ss_dssp HHHHHHT-TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEEEETTEEEEEEEESSSEEEECSCSSCHHHHHHHH
T ss_pred HHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeccccccchhhhcCcceEEEEEecCCchhHHHHHHH
Confidence 4566676 4568999999999999999999999999999999983 333 12443 5553 4566666
Q ss_pred HHHh
Q 025511 210 YIKR 213 (251)
Q Consensus 210 fI~q 213 (251)
.+..
T Consensus 103 ~~~~ 106 (192)
T 1uly_A 103 SRLK 106 (192)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 119
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=87.26 E-value=2.5 Score=36.68 Aligned_cols=65 Identities=15% Similarity=0.277 Sum_probs=54.5
Q ss_pred HHHHHHhcC--ccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee---CCCceEEEcHHHHHHHHHHH
Q 025511 147 FVEYIKKHK--CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYI 211 (251)
Q Consensus 147 FI~YIK~~K--VV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD---DRGKFIYIS~EEm~aVA~fI 211 (251)
.+.+|..+. -+...|||..++++..-+-..|..|++.|-|+=.-| -|..+|++|++-.+.+....
T Consensus 163 vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~~~~~ 232 (250)
T 1p4x_A 163 ILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAEQLL 232 (250)
T ss_dssp HHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHHHHHH
Confidence 355665554 588999999999999999999999999999999886 38999999999877766543
No 120
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=86.94 E-value=0.63 Score=36.51 Aligned_cols=52 Identities=17% Similarity=0.135 Sum_probs=42.6
Q ss_pred cchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHH
Q 025511 157 IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYI 211 (251)
Q Consensus 157 V~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI 211 (251)
+...+||...|++.+-+-.-+++|.++|-|. + ++|+++-+.++.+.++|.++
T Consensus 164 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~--~-~~~~i~i~d~~~L~~~a~~l 215 (216)
T 4ev0_A 164 IRHHELAALAGTSRETVSRVLHALAEEGVVR--L-GPGTVEVREAALLEEIAFGL 215 (216)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE--E-ETTEEEESCHHHHHHHHTTC
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE--e-cCCEEEEeCHHHHHHHhhcc
Confidence 5689999999998888888899999999886 2 46776666788888888754
No 121
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=86.26 E-value=1.7 Score=30.42 Aligned_cols=54 Identities=13% Similarity=0.292 Sum_probs=45.7
Q ss_pred HHHHHHHHhc--CccchHhHHhHc-----CCChHHHHHHHHHHHhcCCcceeeeCCCceEE
Q 025511 145 ADFVEYIKKH--KCIPLEDLAAEF-----KLRTQECINRITSLENMGRLSGVMDDRGKYIY 198 (251)
Q Consensus 145 ~~FI~YIK~~--KVV~LEDLAa~F-----gLrTqdvI~RIq~Lea~G~LTGViDDRGKFIY 198 (251)
...++++..+ .-+..+||+..+ +++..-|-.-++.|++.|.|.-+-.+.|+..|
T Consensus 20 ~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y 80 (83)
T 2fu4_A 20 LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVF 80 (83)
T ss_dssp HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEe
Confidence 3466677665 579999999999 99999999999999999999998887777666
No 122
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=86.06 E-value=2.2 Score=31.44 Aligned_cols=60 Identities=15% Similarity=0.180 Sum_probs=47.8
Q ss_pred HHHHHHHhcCccchHhHHhHcC----CChHHHHHHHHHHHhcCCcceeeeCCC-ceEEEcHHHHH
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFK----LRTQECINRITSLENMGRLSGVMDDRG-KYIYISQAEMK 205 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~Fg----LrTqdvI~RIq~Lea~G~LTGViDDRG-KFIYIS~EEm~ 205 (251)
..+.+|..+.-+...|||..++ ++..-+-.-|+.|++.|-|.-.-|||- .||++|+..-.
T Consensus 14 ~vL~~l~~~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~~~rr~~~~~lT~~g~~ 78 (123)
T 1okr_A 14 EVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDI 78 (123)
T ss_dssp HHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESSCHHHH
T ss_pred HHHHHHHhCCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEecCCeEEEEEecCHHHH
Confidence 3556676677889999999999 778889999999999999998888643 34667877543
No 123
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=85.94 E-value=1.2 Score=36.40 Aligned_cols=46 Identities=20% Similarity=0.353 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcC-ccchHhHHhHcCCChHHHHHHHHHHHhcCCccee
Q 025511 144 LADFVEYIKKHK-CIPLEDLAAEFKLRTQECINRITSLENMGRLSGV 189 (251)
Q Consensus 144 L~~FI~YIK~~K-VV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGV 189 (251)
|.-..+|+..+. -..+.|||.+||++..-+-.+|+.|+..|-|..-
T Consensus 11 l~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 11 LLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEec
Confidence 333345666654 5789999999999999877889999999999754
No 124
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=85.02 E-value=1.2 Score=34.97 Aligned_cols=69 Identities=14% Similarity=0.296 Sum_probs=55.9
Q ss_pred CccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceE--EEcHHHHHHHHHHHHhcCCccHHHHHhhcc
Q 025511 155 KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYI--YISQAEMKAVADYIKRQGRVSISHLASKSN 227 (251)
Q Consensus 155 KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFI--YIS~EEm~aVA~fI~qrGRVSisELa~~sN 227 (251)
+=..++++|..=||++..+.+-|..+...|.-.++-+ || .+++++++.+.+++...|--+++.+-..+.
T Consensus 31 ~G~sleeIA~~R~L~~~TI~~Hl~~~v~~G~~l~i~~----~i~~~l~~~~~~~I~~~~~~~~~~~Lk~i~e~l~ 101 (122)
T 3iuo_A 31 RKVALDDIAVSHGLDFPELLSEVETIVYSGTRINIDY----FINEVMDEDHLEDIFEYFKESTTDSLEEAMQELG 101 (122)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHHHHHTTCCCCCHH----HHHHHSCHHHHHHHHHHHHHCSCCCHHHHHHHHT
T ss_pred cCCCHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHH----HcccccCHHHHHHHHHHHHHcCcccHHHHHHHcc
Confidence 5568899999999999999999999999997433321 11 244999999999999999888877777665
No 125
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=84.96 E-value=2.1 Score=31.23 Aligned_cols=76 Identities=12% Similarity=0.251 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHhc--CccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHhcCC-cc
Q 025511 142 DLLADFVEYIKKH--KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGR-VS 218 (251)
Q Consensus 142 ~lL~~FI~YIK~~--KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~qrGR-VS 218 (251)
+.+...++||..+ .-+.+++||..+|++..-+-...+..- |+ .=.=||..-=|...+..+...+. +|
T Consensus 2 ~~i~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~~~------G~----s~~~~~~~~Rl~~A~~lL~~~~~~~s 71 (108)
T 3mn2_A 2 NAVRQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQRSR------GY----SPMAFAKRVRLQHAHNLLSDGATPTT 71 (108)
T ss_dssp HHHHHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHHHT------SS----CHHHHHHHHHHHHHHHHHHSSSSCCC
T ss_pred HHHHHHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHHHh------Cc----CHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 4678888998765 458999999999999877776666532 21 00114444556666666666554 78
Q ss_pred HHHHHhhcc
Q 025511 219 ISHLASKSN 227 (251)
Q Consensus 219 isELa~~sN 227 (251)
|+++|..|.
T Consensus 72 i~~IA~~~G 80 (108)
T 3mn2_A 72 VTAAALSCG 80 (108)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhC
Confidence 888887764
No 126
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=84.55 E-value=3.4 Score=27.28 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=38.0
Q ss_pred HHHHHHHhcCccchHhHHhHc-----CCChHHHHHHHHHHHhcCCcceeeeCCCceEE
Q 025511 146 DFVEYIKKHKCIPLEDLAAEF-----KLRTQECINRITSLENMGRLSGVMDDRGKYIY 198 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~F-----gLrTqdvI~RIq~Lea~G~LTGViDDRGKFIY 198 (251)
....++..+..+..+||+..| +++..-+-.-|+ ..|.+ .+-.+.|.+.|
T Consensus 9 ~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~---~lg~v-~~~~~~~~~~Y 62 (64)
T 2p5k_A 9 KIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIK---ELHLV-KVPTNNGSYKY 62 (64)
T ss_dssp HHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHH---HHTCE-EEEETTTEEEE
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH---HcCCE-EEecCCCceee
Confidence 344567788899999999999 997665554444 66888 99888888877
No 127
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=84.53 E-value=4.1 Score=32.41 Aligned_cols=61 Identities=5% Similarity=0.006 Sum_probs=50.4
Q ss_pred cCccchHhHHhHc-CCChHHHHHHHHHHHhcCCcceeeeC---CCceEEEcHH------HHHHHHHHHHhc
Q 025511 154 HKCIPLEDLAAEF-KLRTQECINRITSLENMGRLSGVMDD---RGKYIYISQA------EMKAVADYIKRQ 214 (251)
Q Consensus 154 ~KVV~LEDLAa~F-gLrTqdvI~RIq~Lea~G~LTGViDD---RGKFIYIS~E------Em~aVA~fI~qr 214 (251)
..-....||+... |++..-+-.+++.|++.|-|+-..++ |..++++|+. -+.+++.|..+.
T Consensus 37 ~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~~~l~~l~~W~~~~ 107 (131)
T 4a5n_A 37 DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLEPIVLQMKEWGESN 107 (131)
T ss_dssp TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHHHHHHHHHHHHHHH
Confidence 5567889999999 99999999999999999999988764 4667789997 567777765543
No 128
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=84.39 E-value=2.4 Score=31.02 Aligned_cols=76 Identities=13% Similarity=0.232 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHHhc--CccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHhcCCcc
Q 025511 141 RDLLADFVEYIKKH--KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVS 218 (251)
Q Consensus 141 q~lL~~FI~YIK~~--KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~qrGRVS 218 (251)
...+...++||..+ .-+.+++||..+|++..-+-...+..-...- .=||..-=|...+..+.. +..|
T Consensus 4 ~~~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~----------~~~~~~~Rl~~A~~lL~~-~~~s 72 (108)
T 3oou_A 4 SPIIQNVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQKEMGEHF----------TDYLNRYRVNYAKEELLQ-TKDN 72 (108)
T ss_dssp CCHHHHHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHHHHSSCH----------HHHHHHHHHHHHHHHHHH-CCCC
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCH----------HHHHHHHHHHHHHHHHHc-CCCC
Confidence 45788999999875 5679999999999998887777776432110 113444446666666654 5678
Q ss_pred HHHHHhhcc
Q 025511 219 ISHLASKSN 227 (251)
Q Consensus 219 isELa~~sN 227 (251)
|+++|..|.
T Consensus 73 i~~IA~~~G 81 (108)
T 3oou_A 73 LTIIAGKSG 81 (108)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 988888764
No 129
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=84.00 E-value=2 Score=33.72 Aligned_cols=50 Identities=14% Similarity=0.212 Sum_probs=40.3
Q ss_pred cchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHH
Q 025511 157 IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVAD 209 (251)
Q Consensus 157 V~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~ 209 (251)
+..++||...|++.+-+-.-+++|.++|.|.- ++|+++-+.++.+.++|.
T Consensus 170 ~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~---~~~~i~i~d~~~L~~~a~ 219 (220)
T 3dv8_A 170 ITHETIANHLGSHREVITRMLRYFQVEGLVKL---SRGKITILDSKRLETLQR 219 (220)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE---ETTEEEESCHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe---CCCEEEEeCHHHHHHHhc
Confidence 56799999999988888778899999998852 467766667888887774
No 130
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=83.95 E-value=0.72 Score=34.35 Aligned_cols=55 Identities=24% Similarity=0.333 Sum_probs=46.3
Q ss_pred HHHHHHHhcCccchHh--------HHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEc
Q 025511 146 DFVEYIKKHKCIPLED--------LAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYIS 200 (251)
Q Consensus 146 ~FI~YIK~~KVV~LED--------LAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS 200 (251)
..|.-.|.+|.....+ |...|..++.++-.+|..|.+.+-|--.-||+..|.|+.
T Consensus 15 aIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYl~R~~~~~~~y~Y~A 77 (77)
T 3tdu_C 15 AIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 77 (77)
T ss_dssp HHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred EEeeeecccceeeHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhHhhcCCCCCceEEEeC
Confidence 3455668888776544 677899999999999999999999999988999999984
No 131
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=83.50 E-value=1.6 Score=32.86 Aligned_cols=52 Identities=12% Similarity=0.091 Sum_probs=45.9
Q ss_pred CchhHHHHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceee
Q 025511 139 GDRDLLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVM 190 (251)
Q Consensus 139 ~sq~lL~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGVi 190 (251)
+..+++-.+|.++...+-...-+||.+||++.+++=.-+-.|+..|.+..+=
T Consensus 12 ~~~~~v~~~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~~ 63 (75)
T 1sfu_A 12 EIFSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMVP 63 (75)
T ss_dssp HHHHHHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecCC
Confidence 3467788999999999999999999999999999777889999999997763
No 132
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=83.36 E-value=2.5 Score=34.69 Aligned_cols=58 Identities=21% Similarity=0.324 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHhcCccchHhHHhHc-----CCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHH
Q 025511 142 DLLADFVEYIKKHKCIPLEDLAAEF-----KLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAE 203 (251)
Q Consensus 142 ~lL~~FI~YIK~~KVV~LEDLAa~F-----gLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EE 203 (251)
.....+.+.|..++++..+||+..| ++ ||.+|+| +|.+.| ++=|-+..|+|+|.-|.+
T Consensus 5 ~R~~~I~~li~~~~~~tq~eL~~~L~~~G~~V-tqaTisR--DL~eL~-~vKv~~~~g~~~Y~lp~~ 67 (149)
T 1b4a_A 5 QRHIKIREIIMSNDIETQDELVDRLREAGFNV-TQATVSR--DIKEMQ-LVKVPMANGRYKYSLPSD 67 (149)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCC-CHHHHHH--HHHHTT-CEEEECSSSCEEEECTTC
T ss_pred HHHHHHHHHHHHCCCccHHHHHHHHHHcCCCc-CHHHHHH--HHHHcC-CeEEECCCCCEEEEeCCC
Confidence 3567788899999999999999999 76 8888887 344444 455667789999999875
No 133
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=82.92 E-value=1.8 Score=34.68 Aligned_cols=60 Identities=12% Similarity=0.202 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEc
Q 025511 141 RDLLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYIS 200 (251)
Q Consensus 141 q~lL~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS 200 (251)
+..++.+..-|..-|+|..--||..|+++-.-+-.-|++|+..|.|--|.-.++-.||.-
T Consensus 44 k~t~dkl~KEVpk~KlITpsvlseRlkI~gSLAR~aLreL~~kGlIk~V~kh~~q~IYTr 103 (108)
T 3u5c_Z 44 QEKYDRILKEVPTYRYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKPISKHSKQAIYTR 103 (108)
T ss_dssp THHHHHHHHHCSSCSSBSHHHHHHTTCCCTTHHHHHHHHHSSSSSCEEEECCSSCCEEEC
T ss_pred HHHHHHHHHHccCCeEEeHHHhhhhhhhhHHHHHHHHHHHHHCCCEEEEecCCCEEEEec
Confidence 567888999999999999999999999999999999999999999999999999999973
No 134
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.25 E-value=1.6 Score=39.98 Aligned_cols=75 Identities=16% Similarity=0.317 Sum_probs=43.6
Q ss_pred hcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHhcCCc-cHHHHHhhcccccc
Q 025511 153 KHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRV-SISHLASKSNQFID 231 (251)
Q Consensus 153 ~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~qrGRV-SisELa~~sN~lI~ 231 (251)
..+.+.+++||..+|++..++=.-|-++...|.|.|-||.-...|+||- . .||+ +..++..-.++|-.
T Consensus 304 ~~~~i~f~~ia~~l~i~~~evE~lli~aI~~glI~GkIDQv~~~v~v~~---------~--~pR~~~~~q~~~l~~~L~~ 372 (393)
T 4b4t_O 304 NIRMLSFEDISKATHLPKDNVEHLVMRAISLGLLKGSIDQVNELVTISW---------V--QPRIISGDQITKMKDRLVE 372 (393)
T ss_dssp SCCCEEHHHHHHHHTCCHHHHHHHHHHHHHHSCSSSCEETTTTEECC---------------------------------
T ss_pred CCCcCcHHHHHHHhCcCHHHHHHHHHHHHHcCCEEEEEcCCCCEEEEEe---------c--cCCCCCHHHHHHHHHHHHH
Confidence 3568999999999999999998899999999999999999888999972 1 1333 33455555555555
Q ss_pred cccccch
Q 025511 232 LETKAQF 238 (251)
Q Consensus 232 L~p~~~~ 238 (251)
|..+.++
T Consensus 373 W~~~v~~ 379 (393)
T 4b4t_O 373 WNDQVEK 379 (393)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 5544443
No 135
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=82.13 E-value=2.2 Score=32.30 Aligned_cols=58 Identities=17% Similarity=0.271 Sum_probs=48.7
Q ss_pred chhHHHHHHHHHHhc-CccchHhHHhHcCC-ChHHHHHHHHHHHhcCCcceeeeCCCceEE
Q 025511 140 DRDLLADFVEYIKKH-KCIPLEDLAAEFKL-RTQECINRITSLENMGRLSGVMDDRGKYIY 198 (251)
Q Consensus 140 sq~lL~~FI~YIK~~-KVV~LEDLAa~FgL-rTqdvI~RIq~Lea~G~LTGViDDRGKFIY 198 (251)
..++=+.+++.|+.+ +=|.=+||+.+|+- ..++.++-|+.|+++|+|. ++-.-|+.||
T Consensus 12 ~~~ie~~IL~l~~~~P~GItd~~L~~~~p~~~~~~r~~aIN~LL~~gkie-l~K~~~~liY 71 (81)
T 2dk8_A 12 PVEIENRIIELCHQFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLD-LLRSNTGLLY 71 (81)
T ss_dssp HHHHHHHHHHHHHHCSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHHTSEE-EEECSSSEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHcCCeE-EEecCCeEEE
Confidence 344456688888765 56777889999976 9999999999999999999 8888899999
No 136
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=81.76 E-value=2.1 Score=37.06 Aligned_cols=111 Identities=13% Similarity=0.174 Sum_probs=76.8
Q ss_pred HHHHhhhccceec----cCCccchhcccCchhHHHHHHHHH-----HhcCccchHhHHhHcC-------CChHHHHHHHH
Q 025511 115 FEFEKWKGEFSID----AEGTTENEVQDGDRDLLADFVEYI-----KKHKCIPLEDLAAEFK-------LRTQECINRIT 178 (251)
Q Consensus 115 EEY~KwK~~f~VE----eeG~~~~e~ee~sq~lL~~FI~YI-----K~~KVV~LEDLAa~Fg-------LrTqdvI~RIq 178 (251)
..+..|-..++|+ ..|.-. ..+=-.++-.+.++++ +..-++.|.||=..|+ ++++|+..-++
T Consensus 47 ~~f~~m~~slGvd~Pl~~~~~~s--~~~f~~ELa~qi~e~c~~~~~~~GG~I~L~dl~~~~nraRG~~lVSp~Dl~~A~~ 124 (218)
T 3cuq_B 47 IRFKSYLLSMGIANPVTRETYGS--GTQYHMQLAKQLAGILQVPLEERGGIMSLTEVYCLVNRARGMELLSPEDLVNACK 124 (218)
T ss_dssp HHHHHHHHHHTCCCHHHHTTSSC--SCHHHHHHHHHHHHHHHHHHHHTTSEEEHHHHHHHHHHTCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcchhhccCc--ccHHHHHHHHHHHHHHHHHHHhCCCeEEHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 4566676677776 122111 0111244444444444 2356999999999997 99999999999
Q ss_pred HHHhcCCcceeee-CCCce-EEEcHHHH----HHHHHHHHhcCCccHHHHHhhcc
Q 025511 179 SLENMGRLSGVMD-DRGKY-IYISQAEM----KAVADYIKRQGRVSISHLASKSN 227 (251)
Q Consensus 179 ~Lea~G~LTGViD-DRGKF-IYIS~EEm----~aVA~fI~qrGRVSisELa~~sN 227 (251)
.|+..|.-..|+. +.|++ |.-.|.++ ..|..++...|.||..+|+..-|
T Consensus 125 ~l~~Lg~~~~l~~~~sg~~vvqs~~~~~~~~~~~il~~~~~~g~vt~~~la~~l~ 179 (218)
T 3cuq_B 125 MLEALKLPLRLRVFDSGVMVIELQSHKEEEMVASALETVSEKGSLTSEEFAKLVG 179 (218)
T ss_dssp TTTTTTCSEEEEECTTSBEEEEETTCCGGGGHHHHHHHHHHTSCBCHHHHHHHHT
T ss_pred HHHHcCCCEEEEEECCCcEEEEcCCCchHHHHHHHHHHHHHCCCcCHHHHHHHhC
Confidence 9999997677777 56884 65556554 66777888899999999998653
No 137
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=81.72 E-value=3.7 Score=36.97 Aligned_cols=66 Identities=14% Similarity=0.247 Sum_probs=55.6
Q ss_pred HHHHHHhc--CccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee---CCCceEEEcHHHHHHHHHHHH
Q 025511 147 FVEYIKKH--KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYIK 212 (251)
Q Consensus 147 FI~YIK~~--KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD---DRGKFIYIS~EEm~aVA~fI~ 212 (251)
++.+|..+ .=+...+||...++...-+-.-|..|++.|-|+=.-| -|..+||+|+.-.+.+.....
T Consensus 409 vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~~~~~~~ 479 (487)
T 1hsj_A 409 ILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQKLIS 479 (487)
T ss_dssp HHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHHHHHHHH
Confidence 56677777 7789999999999999999999999999999998875 489999999988765554443
No 138
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=81.70 E-value=2.3 Score=33.06 Aligned_cols=55 Identities=18% Similarity=0.255 Sum_probs=40.4
Q ss_pred ccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee---CCCceEEEcHHHHHHHHHHH
Q 025511 156 CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYI 211 (251)
Q Consensus 156 VV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD---DRGKFIYIS~EEm~aVA~fI 211 (251)
-+...+||..+|++.+-+-.-|..|++.|-|. .-| -|.+.|++|+.-...+....
T Consensus 52 ~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr-~~~~~DrR~~~v~LT~~G~~~~~~~~ 109 (148)
T 4fx0_A 52 DLTMSELAARIGVERTTLTRNLEVMRRDGLVR-VMAGADARCKRIELTAKGRAALQKAV 109 (148)
T ss_dssp --CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC------------CCBCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCChhhHHHHHHHHHHCCCEE-eeCCCCCCeeEEEECHHHHHHHHHHH
Confidence 47889999999999999999999999999884 344 48999999999887776654
No 139
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.55 E-value=4.1 Score=31.82 Aligned_cols=55 Identities=24% Similarity=0.374 Sum_probs=47.5
Q ss_pred HHHHHHHhcCccchHhHHhH------cCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEc
Q 025511 146 DFVEYIKKHKCIPLEDLAAE------FKLRTQECINRITSLENMGRLSGVMDDRGKYIYIS 200 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~------FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS 200 (251)
..|.-.|.+|.....+|-.+ |..++.++-.+|..|...+-|--.-||++.|+|+.
T Consensus 35 aIVRIMK~rK~l~h~~Lv~eV~~ql~F~p~~~~IKk~IE~LIereYleR~~~d~~~y~YlA 95 (101)
T 2do7_A 35 AIVRIMKMRKTLSHNLLVSEVYNQLKFPVKPADLKKRIESLIDRDYMERDKENPNQYNYIA 95 (101)
T ss_dssp HHHHHHHHSSEEEHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHTTSEEECSSCTTEEEECC
T ss_pred HHHHHHhhcccccHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhHHhcCCCCCCeEEEec
Confidence 44666799999887776544 99999999999999999999999888999999985
No 140
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=81.55 E-value=5.8 Score=30.31 Aligned_cols=56 Identities=27% Similarity=0.309 Sum_probs=47.3
Q ss_pred HHHHHHHHhcCccchHhH--------HhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEc
Q 025511 145 ADFVEYIKKHKCIPLEDL--------AAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYIS 200 (251)
Q Consensus 145 ~~FI~YIK~~KVV~LEDL--------Aa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS 200 (251)
...|.-.|.+|.....+| ...|..++.++-.+|..|...+-|--.-||+..|+|+.
T Consensus 29 AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYleR~~~d~~~y~Y~A 92 (92)
T 1iuy_A 29 AAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 92 (92)
T ss_dssp HHHHHHHHHHCEEEHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHTTSEEECSSCSSEEEEC-
T ss_pred eeeeehhhccccccHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhhhhhhcCCCCCCeeEecC
Confidence 445677899998876654 45699999999999999999999999888999999984
No 141
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=81.52 E-value=8.9 Score=28.53 Aligned_cols=76 Identities=12% Similarity=0.152 Sum_probs=52.6
Q ss_pred chhHHHHHHHHHHhc--CccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHhcCCc
Q 025511 140 DRDLLADFVEYIKKH--KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRV 217 (251)
Q Consensus 140 sq~lL~~FI~YIK~~--KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~qrGRV 217 (251)
...++..+++||..+ .-+.+++||..+|++..-+-...+. . |.= + .=||..-=|......+ ..+..
T Consensus 5 ~~~~~~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~--~-G~s--~------~~~~~~~Rl~~A~~lL-~~~~~ 72 (120)
T 3mkl_A 5 QPNMRTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLRE--E-ETS--Y------SQLLTECRMQRALQLI-VIHGF 72 (120)
T ss_dssp CCCHHHHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHH--T-TCC--H------HHHHHHHHHHHHHHHH-TSTTC
T ss_pred cHHHHHHHHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHH--c-CCC--H------HHHHHHHHHHHHHHHH-HcCCC
Confidence 456789999999876 5678999999999998876666654 2 421 0 1134444466666666 45678
Q ss_pred cHHHHHhhcc
Q 025511 218 SISHLASKSN 227 (251)
Q Consensus 218 SisELa~~sN 227 (251)
|+++++..|.
T Consensus 73 si~eIA~~~G 82 (120)
T 3mkl_A 73 SIKRVAVSCG 82 (120)
T ss_dssp CHHHHHHHTT
T ss_pred CHHHHHHHHC
Confidence 8888887764
No 142
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=81.36 E-value=1.6 Score=34.95 Aligned_cols=60 Identities=18% Similarity=0.239 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEc
Q 025511 141 RDLLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYIS 200 (251)
Q Consensus 141 q~lL~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS 200 (251)
+..++.+..-|..-|+|..--||..|+++-.-+-.-|++|+..|.|--|.-.++-.||.-
T Consensus 45 k~t~dkl~KEVpk~KlITpsvlseRlkI~gSLAR~aLreL~~kGlIk~V~kh~~q~IYTr 104 (108)
T 3iz6_V 45 KATYDKLLSEVPKYKQITPSVLSERLRINGSLARQAIKDLESRGAIRVVSVHSSQLIYTR 104 (108)
T ss_dssp SHHHHHHHHHHHHHSSEEEHHHHHHHHTCCHHHHHHHHHHHHHHTSCEECCCTTSCCEEE
T ss_pred HHHHHHHHHHccCCeEEeHHHHHhhhcccHHHHHHHHHHHHHCCCEEEEecCCCEEEEec
Confidence 456788888899999999999999999999999999999999999999998899999963
No 143
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=81.30 E-value=8.7 Score=32.36 Aligned_cols=87 Identities=13% Similarity=0.246 Sum_probs=62.2
Q ss_pred HHHHHHHhcC-ccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHhcCCc-----cH
Q 025511 146 DFVEYIKKHK-CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRV-----SI 219 (251)
Q Consensus 146 ~FI~YIK~~K-VV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~qrGRV-----Si 219 (251)
..++++..+. -+.+.|||..+|++..-+-..++.|++.|-|.-. +.|+| ++++.=+.--..+.....-+ -+
T Consensus 12 ~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~~--~~~~Y-~lg~~~~~l~~~~~~~~~l~~~a~p~l 88 (249)
T 1mkm_A 12 EILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRK--KDKRY-VPGYKLIEYGSFVLRRFNIRDIAHDHL 88 (249)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC--TTSCE-EECTHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEC--CCCcE-EECHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4556676554 6899999999999999999999999999999875 44555 78887555444555443322 24
Q ss_pred HHHHhhcccccccccc
Q 025511 220 SHLASKSNQFIDLETK 235 (251)
Q Consensus 220 sELa~~sN~lI~L~p~ 235 (251)
.+|+..++.-..|.--
T Consensus 89 ~~L~~~~~etv~L~v~ 104 (249)
T 1mkm_A 89 VDIMKRTGETVHLILK 104 (249)
T ss_dssp HHHHHTTCSCEEEEEE
T ss_pred HHHHHHhCCeEEEEEE
Confidence 5777777776666543
No 144
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=81.25 E-value=1.8 Score=28.78 Aligned_cols=30 Identities=13% Similarity=0.236 Sum_probs=26.1
Q ss_pred eEEEcHHHHHHHHHHHHhcCCccHHHHHhhc
Q 025511 196 YIYISQAEMKAVADYIKRQGRVSISHLASKS 226 (251)
Q Consensus 196 FIYIS~EEm~aVA~fI~qrGRVSisELa~~s 226 (251)
=|.+|++|++.+..+.+..| +|++++++.+
T Consensus 19 ~vRlt~eE~~~l~~~A~~~g-~s~SeyiR~~ 48 (51)
T 2ba3_A 19 TLRFSPVEDETIRKKAEDSG-LTVSAYIRNA 48 (51)
T ss_dssp EEEECHHHHHHHHHHHHHHT-CCHHHHHHHH
T ss_pred EEEECHHHHHHHHHHHHHhC-CCHHHHHHHH
Confidence 36799999999999999999 6899988753
No 145
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=81.23 E-value=7.1 Score=30.19 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCc------cchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHH
Q 025511 143 LLADFVEYIKKHKC------IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAE 203 (251)
Q Consensus 143 lL~~FI~YIK~~KV------V~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EE 203 (251)
....+.+.|..... -...+||.+||++..-|..-++.|+.+|.|.- .--+|-||--++.+
T Consensus 16 i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~-~~g~G~~V~~~~~~ 81 (126)
T 3by6_A 16 LVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRT-IPGKGTFITGNTAS 81 (126)
T ss_dssp HHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-ETTTEEEECSCHHH
T ss_pred HHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE-ecCCeEEEccCchh
Confidence 34555566665544 37889999999999999999999999998754 23456555434443
No 146
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=81.21 E-value=5.8 Score=28.88 Aligned_cols=75 Identities=9% Similarity=0.188 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHhc---CccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHhcCCcc
Q 025511 142 DLLADFVEYIKKH---KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVS 218 (251)
Q Consensus 142 ~lL~~FI~YIK~~---KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~qrGRVS 218 (251)
..+...++||..+ .-+.+++||.++|++..-+-...+..-... + .=||..-=|......+.. +..|
T Consensus 3 ~~i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s-~---------~~~~~~~Rl~~A~~lL~~-~~~s 71 (107)
T 2k9s_A 3 NRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGIS-V---------LSWREDQRISQAKLLLST-TRMP 71 (107)
T ss_dssp HHHHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHHHSSC-H---------HHHHHHHHHHHHHHHHHH-CCCC
T ss_pred HHHHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHHHCcC-H---------HHHHHHHHHHHHHHHHHc-CCCC
Confidence 4578899999876 568999999999998887776666532211 0 013344445555556653 5588
Q ss_pred HHHHHhhcc
Q 025511 219 ISHLASKSN 227 (251)
Q Consensus 219 isELa~~sN 227 (251)
|+++|..|.
T Consensus 72 i~~IA~~~G 80 (107)
T 2k9s_A 72 IATVGRNVG 80 (107)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhC
Confidence 888887663
No 147
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=80.97 E-value=8.2 Score=29.63 Aligned_cols=55 Identities=7% Similarity=0.158 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhcCc------cchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEE
Q 025511 143 LLADFVEYIKKHKC------IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIY 198 (251)
Q Consensus 143 lL~~FI~YIK~~KV------V~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIY 198 (251)
....+.+.|..... -...+||.+||++..-|..-++.|..+|.|.-. .-+|-||-
T Consensus 18 i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~-~g~G~~V~ 78 (125)
T 3neu_A 18 ISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK-RGMGSFVT 78 (125)
T ss_dssp HHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTTEEEEC
T ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEe-cCCEEEEe
Confidence 44555666665443 358999999999999999999999999987543 33555553
No 148
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=80.84 E-value=6.8 Score=29.75 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=47.3
Q ss_pred chHhHHhHc--CCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHhc
Q 025511 158 PLEDLAAEF--KLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQ 214 (251)
Q Consensus 158 ~LEDLAa~F--gLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~qr 214 (251)
.+.+|+..| +++..-+---++.|+++|-|+..-+++-||.-||+.--+.+..+...-
T Consensus 30 i~~ei~~~~~~~is~GtlYp~L~rLe~~GlI~~~~~~~rk~Y~iT~~Gr~~l~~~~~~~ 88 (99)
T 2co5_A 30 LRSEILKRFDIDISDGVLYPLIDSLIDDKILREEEAPDGKVLFLTEKGMKEFEELHEFF 88 (99)
T ss_dssp HHHHHHHHHCCBCCHHHHHHHHHHHHHTTSEEEECCTTSCEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCcHHHHHHHHHHCCCEEEeeCCCcEEEEECHHHHHHHHHHHHhH
Confidence 345677766 588888888999999999999988777789999999999998887653
No 149
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=80.82 E-value=4.9 Score=33.43 Aligned_cols=53 Identities=19% Similarity=0.325 Sum_probs=45.6
Q ss_pred cchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHH
Q 025511 157 IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVAD 209 (251)
Q Consensus 157 V~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~ 209 (251)
+.+.++|..+|++.+-+-..|+.|++.|-+.=..|.|++.|.+|+.-..-+..
T Consensus 28 ~s~s~aA~~L~isq~avSr~I~~LE~~~L~~R~~~~R~~~v~LT~~G~~l~~~ 80 (230)
T 3cta_A 28 LTSSKLADMLGISQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLYT 80 (230)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHH
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEcCCeEEEEECHHHHHHHHH
Confidence 45899999999999999999999999888877777889999999987665544
No 150
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=80.63 E-value=2 Score=35.93 Aligned_cols=60 Identities=8% Similarity=0.221 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHHhc-CccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEc
Q 025511 141 RDLLADFVEYIKKH-KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYIS 200 (251)
Q Consensus 141 q~lL~~FI~YIK~~-KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS 200 (251)
+..++.+..-|..- |+|..--||..|+++-.-+-.-|++|+..|.|--|.-.++-.||.-
T Consensus 47 k~tydKL~KEVpk~gKlITpsvlseRlkI~gSLARkaLreL~~kGlIk~V~kh~~q~IYTr 107 (143)
T 2xzm_8 47 KKNVESIINNPSKVGKVLTVSTVVEKLKVNGSLARQLMRTMADRKLVEKVAKNGNQWVYSV 107 (143)
T ss_dssp HHHHHHHHTCCTTSCSEECHHHHHHHHCBCHHHHHHHHHHHHHTTSEEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHhcccceeecHHHHHHHhcchHHHHHHHHHHHHHCCCEEEEecCCCeEEEec
Confidence 56788888889999 9999999999999999999999999999999999999999999974
No 151
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=80.52 E-value=4.5 Score=28.25 Aligned_cols=54 Identities=19% Similarity=0.314 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCccchHhHHhHcC----CChHHHHHHHHHHHhcCCcceeeeCCCceEEE
Q 025511 145 ADFVEYIKKHKCIPLEDLAAEFK----LRTQECINRITSLENMGRLSGVMDDRGKYIYI 199 (251)
Q Consensus 145 ~~FI~YIK~~KVV~LEDLAa~Fg----LrTqdvI~RIq~Lea~G~LTGViDDRGKFIYI 199 (251)
...+.+|-.+.-+...|||..++ ++..-+-.-|+.|++.|-|.=.-|.| .|+|-
T Consensus 12 ~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~~gr-~~~y~ 69 (82)
T 1p6r_A 12 LEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKEGR-VFVYT 69 (82)
T ss_dssp HHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEEETT-EEEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEecCC-EEEEE
Confidence 34677777777889999999997 67888889999999999999877655 67773
No 152
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.35 E-value=2.5 Score=39.11 Aligned_cols=54 Identities=17% Similarity=0.142 Sum_probs=45.9
Q ss_pred HHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcH
Q 025511 148 VEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQ 201 (251)
Q Consensus 148 I~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~ 201 (251)
...++--..+.++.||..+|++++++-.-|-+|..+|+|.|.||.-...|+...
T Consensus 351 ~~i~k~Ys~I~l~~la~lL~l~~~evE~~ls~mI~~g~i~akIDq~~giV~F~~ 404 (445)
T 4b4t_P 351 RVISEYYSRITLLRLNELLDLTESQTETYISDLVNQGIIYAKVNRPAKIVNFEK 404 (445)
T ss_dssp HHHHHHEEEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCEEETTTTEEEC--
T ss_pred HHHHHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEcCCCCEEEECC
Confidence 345666789999999999999999999999999999999999998656777653
No 153
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=79.95 E-value=3.1 Score=32.99 Aligned_cols=49 Identities=8% Similarity=0.125 Sum_probs=38.5
Q ss_pred cchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHH
Q 025511 157 IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVA 208 (251)
Q Consensus 157 V~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA 208 (251)
+...+||...|++.+-+-.-++.|.++|.|.= ++|+++-+.++.+.++|
T Consensus 178 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~---~~~~i~i~d~~~L~~~a 226 (227)
T 3d0s_A 178 LTQEEIAQLVGASRETVNKALADFAHRGWIRL---EGKSVLISDSERLARRA 226 (227)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE---ETTEEEESCHHHHHHHH
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEe---cCCEEEEcCHHHHHHhh
Confidence 56899999999988888888999999997742 45655555777777765
No 154
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=79.35 E-value=1.7 Score=33.16 Aligned_cols=55 Identities=24% Similarity=0.318 Sum_probs=45.5
Q ss_pred HHHHHHHHhcCccchHh--------HHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEc
Q 025511 145 ADFVEYIKKHKCIPLED--------LAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYIS 200 (251)
Q Consensus 145 ~~FI~YIK~~KVV~LED--------LAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS 200 (251)
...|.-.|.+|.....+ |...|..++.++-.+|..|...+-|.-.=|| +.|+|+.
T Consensus 26 AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIekeYleR~~~~-~~y~YlA 88 (88)
T 3o2p_E 26 ACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRGDDG-ESYAYLA 88 (88)
T ss_dssp HHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECTTS-SEEEECC
T ss_pred eeeehhhcccccccHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhHHhcCCCC-CeEEeeC
Confidence 34566678888776644 6778999999999999999999999987666 9999984
No 155
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=79.33 E-value=2.5 Score=33.64 Aligned_cols=50 Identities=24% Similarity=0.240 Sum_probs=39.7
Q ss_pred cchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEE-cHHHHHHHHH
Q 025511 157 IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYI-SQAEMKAVAD 209 (251)
Q Consensus 157 V~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYI-S~EEm~aVA~ 209 (251)
+...+||...|++.+-+-.-++.|.++|.|.- ++|+.|.| .++.+.++|.
T Consensus 164 ~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~---~~~~i~~i~d~~~L~~~~~ 214 (222)
T 1ft9_A 164 FTVEEIANLIGSSRQTTSTALNSLIKEGYISR---QGRGHYTIPNLVRLKAAAD 214 (222)
T ss_dssp CCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEE---CSTTCEECSSHHHHHHTC-
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEE---cCCceEEEcCHHHHHHHHh
Confidence 56799999999988888888999999998753 56675555 8888887765
No 156
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=78.55 E-value=6.7 Score=29.32 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=42.6
Q ss_pred hHHhHcCCChHHHHHHHHHHHhcCCcceeeeC---C-CceEEEcHHHHHHHHHHHHhc
Q 025511 161 DLAAEFKLRTQECINRITSLENMGRLSGVMDD---R-GKYIYISQAEMKAVADYIKRQ 214 (251)
Q Consensus 161 DLAa~FgLrTqdvI~RIq~Lea~G~LTGViDD---R-GKFIYIS~EEm~aVA~fI~qr 214 (251)
+|+..++++..-+-.-+..|++.|-|+...+. | -+++.||+.-.+.+..+...-
T Consensus 31 ~l~~~~~i~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l~~~~~~~ 88 (108)
T 3l7w_A 31 TIKLIASIKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHLVYLTKEW 88 (108)
T ss_dssp HHTTTCCCCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHHHHHHHHH
Confidence 34445799999999999999999999998763 3 246669999988888776543
No 157
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=78.43 E-value=11 Score=31.62 Aligned_cols=52 Identities=6% Similarity=0.103 Sum_probs=43.1
Q ss_pred chHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHH
Q 025511 158 PLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIK 212 (251)
Q Consensus 158 ~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~ 212 (251)
...+||..+|++..-+-.-|+.|++.|-|+=. +.++|++|+.-...+....+
T Consensus 26 ~~~~la~~l~vs~~tvs~~l~~Le~~GlV~r~---~~~~v~LT~~G~~~~~~~~~ 77 (226)
T 2qq9_A 26 LRARIAERLEQSGPTVSQTVARMERDGLVVVA---SDRSLQMTPTGRTLATAVMR 77 (226)
T ss_dssp BHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC---TTSBEEECHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe---CCCCeEECHHHHHHHHHHHH
Confidence 35899999999999999999999999988654 34889999988776555544
No 158
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=78.39 E-value=3 Score=33.86 Aligned_cols=52 Identities=13% Similarity=0.167 Sum_probs=41.4
Q ss_pred ccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHH
Q 025511 156 CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADY 210 (251)
Q Consensus 156 VV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~f 210 (251)
-+...+||...|++.+-+-.-++.|.++|.|.- ++|+++-+.++.+.++|.+
T Consensus 177 ~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~---~~~~i~i~d~~~L~~~a~~ 228 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLASLKRENILDK---KKNKIIVYNLGELKHLSEQ 228 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE---CSSEEEESCHHHHHHHHTS
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEe---CCCEEEEecHHHHHHHHcc
Confidence 357899999999988888888999999987752 5677776777777777665
No 159
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=78.37 E-value=3.7 Score=32.08 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=39.4
Q ss_pred cchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHH
Q 025511 157 IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVAD 209 (251)
Q Consensus 157 V~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~ 209 (251)
+..++||...|++.+-+-.-++.|.++|.|. + ++|+++-+.++.+.++|.
T Consensus 147 ~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~--~-~~~~i~i~d~~~L~~~~~ 196 (202)
T 2zcw_A 147 ATHDELAAAVGSVRETVTKVIGELAREGYIR--S-GYGKIQLLDLKGLKELAE 196 (202)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE--E-ETTEEEESCHHHHHHHHT
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE--e-CCCEEEEeCHHHHHHHhc
Confidence 5678999999998888888899999999886 2 456655557777777664
No 160
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=77.40 E-value=8.5 Score=27.71 Aligned_cols=75 Identities=11% Similarity=0.054 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHhc--C-ccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHhcCCcc
Q 025511 142 DLLADFVEYIKKH--K-CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVS 218 (251)
Q Consensus 142 ~lL~~FI~YIK~~--K-VV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~qrGRVS 218 (251)
+++...++||..+ . -+.+++||..+|++..-+-...+..-... + .=||..-=|......+.. +..|
T Consensus 2 ~~~~~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~g~s-~---------~~~~~~~Rl~~A~~lL~~-~~~s 70 (103)
T 3lsg_A 2 NAKELIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKNFGIP-F---------QDYLLQKRMEKAKLLLLT-TELK 70 (103)
T ss_dssp HHHHHHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHHHSSC-H---------HHHHHHHHHHHHHHHHHH-CCCC
T ss_pred hHHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCcC-H---------HHHHHHHHHHHHHHHHHC-CCCC
Confidence 4567888888876 3 67999999999999888777777643211 1 013444445666666654 6678
Q ss_pred HHHHHhhcc
Q 025511 219 ISHLASKSN 227 (251)
Q Consensus 219 isELa~~sN 227 (251)
++++|..|.
T Consensus 71 i~~iA~~~G 79 (103)
T 3lsg_A 71 NYEIAEQVG 79 (103)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhC
Confidence 888887763
No 161
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=76.88 E-value=7.8 Score=29.29 Aligned_cols=77 Identities=17% Similarity=0.206 Sum_probs=52.0
Q ss_pred CchhHHHHHHHHHHhc--CccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHhcCC
Q 025511 139 GDRDLLADFVEYIKKH--KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGR 216 (251)
Q Consensus 139 ~sq~lL~~FI~YIK~~--KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~qrGR 216 (251)
....++..+++||..+ .-+.+++||.++|++..-+-...+..-... . .=||..-=|...+..+.. +.
T Consensus 8 ~~~~~i~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~~G~s-~---------~~~l~~~Rl~~A~~lL~~-~~ 76 (129)
T 1bl0_A 8 TDAITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHS-L---------GQYIRSRKMTEIAQKLKE-SN 76 (129)
T ss_dssp -CHHHHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHHHSSC-H---------HHHHHHHHHHHHHHHHHH-CC
T ss_pred chHHHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCcC-H---------HHHHHHHHHHHHHHHHHc-CC
Confidence 4567899999999875 458999999999998887777666543211 0 113444445666666654 45
Q ss_pred ccHHHHHhhc
Q 025511 217 VSISHLASKS 226 (251)
Q Consensus 217 VSisELa~~s 226 (251)
.||+++|..|
T Consensus 77 ~si~~IA~~~ 86 (129)
T 1bl0_A 77 EPILYLAERY 86 (129)
T ss_dssp CCHHHHHHHT
T ss_pred CCHHHHHHHH
Confidence 6888887766
No 162
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=76.64 E-value=5.5 Score=30.14 Aligned_cols=57 Identities=16% Similarity=0.200 Sum_probs=41.3
Q ss_pred HHHHHHh---cCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEE-cHHH
Q 025511 147 FVEYIKK---HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYI-SQAE 203 (251)
Q Consensus 147 FI~YIK~---~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYI-S~EE 203 (251)
.+.|+.. .+.+...+||..+|++..-+-.-++.|.+.|-|..+-...|.|.-- .+++
T Consensus 14 iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~g~~ggy~L~~~~~~ 74 (129)
T 2y75_A 14 IMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGAYGGYVLGSEPDA 74 (129)
T ss_dssp HHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC----CCEEESSCGGG
T ss_pred HHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecCCCCCceEeCCCHHH
Confidence 3445654 3678999999999999999999999999999987765444556542 3444
No 163
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=76.62 E-value=9 Score=31.96 Aligned_cols=64 Identities=8% Similarity=0.092 Sum_probs=47.7
Q ss_pred HHHHHHHhcCcc-chHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHH
Q 025511 146 DFVEYIKKHKCI-PLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIK 212 (251)
Q Consensus 146 ~FI~YIK~~KVV-~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~ 212 (251)
..+-++....+. ...+||..+|++..-+-.-|+.|++.|-|+=.-| +.|++|+.-...+...++
T Consensus 13 ~~L~~l~~~~~~~~~~~La~~l~vs~~tvs~~l~~Le~~GlV~r~~~---~~v~LT~~G~~~~~~~~~ 77 (230)
T 1fx7_A 13 RTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGD---RHLELTEKGRALAIAVMR 77 (230)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTT---SCEEECHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC---ccEEECHHHHHHHHHHHH
Confidence 334444333332 3499999999999999999999999999876544 699999987776655443
No 164
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=76.43 E-value=2.2 Score=35.09 Aligned_cols=61 Identities=16% Similarity=0.210 Sum_probs=46.1
Q ss_pred HHhcCccchHhHHhHcC--------------CChHHHHHHHHHHHhcCCcceeeeCCCceEE-EcHHHHHHHHHHHHh
Q 025511 151 IKKHKCIPLEDLAAEFK--------------LRTQECINRITSLENMGRLSGVMDDRGKYIY-ISQAEMKAVADYIKR 213 (251)
Q Consensus 151 IK~~KVV~LEDLAa~Fg--------------LrTqdvI~RIq~Lea~G~LTGViDDRGKFIY-IS~EEm~aVA~fI~q 213 (251)
|... -+-..+||..|| ++..-+..-++.|+++|.|.-. -.+|.||- .++.+++.+|..|..
T Consensus 63 i~~g-~~G~~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~-~~~G~~Vt~~~~~~l~~ia~~i~~ 138 (150)
T 2v7f_A 63 YLDG-PVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKV-PGKGRVITPKGRSFLDKIATELKK 138 (150)
T ss_dssp HHHC-SBCHHHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEE-TTTEEEECHHHHHHHHHHHHHHHH
T ss_pred HHhC-CCCHHHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHHCCCEEEe-CCCceEECCCCHHHHHHHHHHHHH
Confidence 4444 334489999999 9999999999999999999865 35677763 345677777777653
No 165
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=76.11 E-value=3.2 Score=27.13 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=26.6
Q ss_pred EEEcHHHHHHHHHHHHhcCCccHHHHHhhc
Q 025511 197 IYISQAEMKAVADYIKRQGRVSISHLASKS 226 (251)
Q Consensus 197 IYIS~EEm~aVA~fI~qrGRVSisELa~~s 226 (251)
|+|+++.++.+..+-.+.|. |.+++++.+
T Consensus 14 vrl~~el~~~l~~~a~~~g~-s~s~~ir~a 42 (55)
T 2k9i_A 14 VYIPQEWHDRLMEIAKEKNL-TLSDVCRLA 42 (55)
T ss_dssp EEECHHHHHHHHHHHHHHTC-CHHHHHHHH
T ss_pred EEcCHHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 78999999999999999997 999998764
No 166
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=75.94 E-value=13 Score=28.41 Aligned_cols=59 Identities=10% Similarity=0.147 Sum_probs=45.1
Q ss_pred HHHHHHHh-cCccchHhHHhHcC----CChHHHHHHHHHHHhcCCcceeeeCCCceEE--EcHHHH
Q 025511 146 DFVEYIKK-HKCIPLEDLAAEFK----LRTQECINRITSLENMGRLSGVMDDRGKYIY--ISQAEM 204 (251)
Q Consensus 146 ~FI~YIK~-~KVV~LEDLAa~Fg----LrTqdvI~RIq~Lea~G~LTGViDDRGKFIY--IS~EEm 204 (251)
..+.+|-. +.=+...|||..++ ++..-+-.-|+.|++.|-|.-.-|+|...++ +|+++.
T Consensus 13 ~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~~~r~~~~~~~lt~~~~ 78 (138)
T 2g9w_A 13 AVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIRDDRAHRYAPVHGRDEL 78 (138)
T ss_dssp HHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC---CCEEEESSCHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEecCCeEEEEeCCCHHHH
Confidence 46777876 46789999999998 7888889999999999999998887744443 566654
No 167
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=75.91 E-value=4.4 Score=31.41 Aligned_cols=35 Identities=17% Similarity=0.280 Sum_probs=31.5
Q ss_pred cchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee
Q 025511 157 IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD 191 (251)
Q Consensus 157 V~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD 191 (251)
....+||..+|++..+|.+.|+.|++.|-|+=..|
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~ 86 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEH 86 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC-
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeE
Confidence 78999999999999999999999999999876544
No 168
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=75.71 E-value=6 Score=28.45 Aligned_cols=83 Identities=10% Similarity=0.069 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCC-ceEEEcHHHHHHHHHHHHhcCCccH
Q 025511 141 RDLLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRG-KYIYISQAEMKAVADYIKRQGRVSI 219 (251)
Q Consensus 141 q~lL~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRG-KFIYIS~EEm~aVA~fI~qrGRVSi 219 (251)
.+.-...+...+.. ..+.++|..||++..-+-.-++.....|.+. .---+| +--.+|++....|..++...+..|.
T Consensus 20 ~~~r~~i~~~~~~g--~s~~~ia~~lgis~~Tv~~w~~~~~~~g~~~-~~~~~g~~~~~l~~~~~~~i~~~~~~~~~~s~ 96 (128)
T 1pdn_C 20 NNIRLKIVEMAADG--IRPCVISRQLRVSHGCVSKILNRYQETGSIR-PGVIGGSKPRIATPEIENRIEEYKRSSPGMFS 96 (128)
T ss_dssp HHHHHHHHHHHHTT--CCHHHHHHHHTCCHHHHHHHHHHHHHHCCSS-CCCCSCCCCCSSCSTHHHHHHHTTTTCTTCCH
T ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHCcCHHHHHHHHHHHHhhCCcc-cccCCCCCCCcCCHHHHHHHHHHHHhCcchHH
Confidence 34445566665433 4678999999998877777777777777542 111134 4456899899999999988899999
Q ss_pred HHHHhhc
Q 025511 220 SHLASKS 226 (251)
Q Consensus 220 sELa~~s 226 (251)
.+|+...
T Consensus 97 ~~i~~~l 103 (128)
T 1pdn_C 97 WEIREKL 103 (128)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888776
No 169
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=75.12 E-value=4.9 Score=32.00 Aligned_cols=48 Identities=13% Similarity=0.129 Sum_probs=37.2
Q ss_pred hHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHH
Q 025511 159 LEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADY 210 (251)
Q Consensus 159 LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~f 210 (251)
..+||...|++.+-+-.-++.|.++| | . -++|+.+-+.++.+.++|.+
T Consensus 181 ~~~iA~~lg~sr~tvsR~l~~L~~~g-i--~-~~~~~i~I~d~~~L~~~~~~ 228 (237)
T 3fx3_A 181 KMLIAGRLGMKPESLSRAFSRLKAAG-V--T-VKRNHAEIEDIALLRDYAES 228 (237)
T ss_dssp THHHHHHTTCCHHHHHHHHHHHGGGT-E--E-CCTTEEEESCHHHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC-e--E-eeCCEEEEcCHHHHHHHhcC
Confidence 68999999998888888889999999 5 2 35666555578888777753
No 170
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=75.10 E-value=2.3 Score=31.30 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=21.3
Q ss_pred HHHHHHHHHhcCCccHHHHHhhcc
Q 025511 204 MKAVADYIKRQGRVSISHLASKSN 227 (251)
Q Consensus 204 m~aVA~fI~qrGRVSisELa~~sN 227 (251)
+..+-++|+++|+||++||++.-|
T Consensus 4 L~~Il~~L~~~g~vsv~eLa~~l~ 27 (78)
T 1xn7_A 4 LIQVRDLLALRGRMEAAQISQTLN 27 (78)
T ss_dssp HHHHHHHHHHSCSBCHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHC
Confidence 567889999999999999998765
No 171
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=75.09 E-value=8.3 Score=35.04 Aligned_cols=62 Identities=13% Similarity=0.207 Sum_probs=50.7
Q ss_pred HHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHH
Q 025511 145 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAV 207 (251)
Q Consensus 145 ~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aV 207 (251)
...++++..+.++..++++..+|++.+-+-.-|+.|.+.|.|.-+-.-|+ -+|+.++=++.+
T Consensus 300 ~~ll~~l~~~p~~t~~~~~~~~gvS~~Ta~r~L~~L~e~GiL~~~~~gR~-~~y~~~~~~~~l 361 (373)
T 2qc0_A 300 HELVQVIFEQPYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQSGKE-KLFVHPKFVTLM 361 (373)
T ss_dssp HHHHHHHHHCSEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC--CCS-CEEECHHHHHHH
T ss_pred HHHHHHHHhCCcccHHHHHHHhCCCHHHHHHHHHHHHHCCcEEEecCCCc-eEEehHHHHHHH
Confidence 45778888899999999999999999999999999999999987755565 578877655543
No 172
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=74.94 E-value=7 Score=32.54 Aligned_cols=58 Identities=14% Similarity=0.246 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhcCccchHhHHhHcCCC-hHHHHHHHH-HHHhcCCcceeeeCCCceEEEc
Q 025511 143 LLADFVEYIKKHKCIPLEDLAAEFKLR-TQECINRIT-SLENMGRLSGVMDDRGKYIYIS 200 (251)
Q Consensus 143 lL~~FI~YIK~~KVV~LEDLAa~FgLr-TqdvI~RIq-~Lea~G~LTGViDDRGKFIYIS 200 (251)
.+-.++.....++.++.++|+.+.+++ ..++=+-|- +....|-|.|-||...+-++||
T Consensus 96 rlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~ 155 (169)
T 3chm_A 96 KQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVP 155 (169)
T ss_dssp HHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEE
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEE
Confidence 355677777789999999999999999 656555555 7788999999999998888887
No 173
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=74.91 E-value=8 Score=33.43 Aligned_cols=65 Identities=18% Similarity=0.447 Sum_probs=53.5
Q ss_pred HHHHHHhc--CccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee---CCCceEEEcHHHHHHHHHHH
Q 025511 147 FVEYIKKH--KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYI 211 (251)
Q Consensus 147 FI~YIK~~--KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD---DRGKFIYIS~EEm~aVA~fI 211 (251)
++.+|-.+ .-+...|||..+++...-+-.-|+.|++.|-|+=.-| -|-.+||+|+.-.+.+....
T Consensus 39 vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~~~~~~ 108 (250)
T 1p4x_A 39 LLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKIAERV 108 (250)
T ss_dssp HHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHHHHHH
Confidence 56667653 4689999999999999999999999999999999876 38889999998766544433
No 174
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=74.60 E-value=4.8 Score=31.35 Aligned_cols=49 Identities=12% Similarity=0.165 Sum_probs=37.4
Q ss_pred cchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHH
Q 025511 157 IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVA 208 (251)
Q Consensus 157 V~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA 208 (251)
+...+||...|++.+-+-.-+++|.++|.|.- ++|+++-+.++.+.++|
T Consensus 140 ~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~---~~~~i~i~d~~~L~~~~ 188 (195)
T 3b02_A 140 VSHEEIADATASIRESVSKVLADLRREGLIAT---AYRRVYLLDLAALEREA 188 (195)
T ss_dssp CCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEE---ETTEEEECCHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe---cCCEEEEeCHHHHHHHh
Confidence 56789999999988888888999999998742 35554444677777665
No 175
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=74.56 E-value=6 Score=31.38 Aligned_cols=50 Identities=16% Similarity=0.206 Sum_probs=37.9
Q ss_pred cchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHH
Q 025511 157 IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVAD 209 (251)
Q Consensus 157 V~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~ 209 (251)
+...+||...|++.+-+-.-+++|.++|.|.- ++|+++-+.++.+.++|.
T Consensus 181 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~---~~~~i~i~d~~~L~~~~~ 230 (232)
T 2gau_A 181 LSREELATLSNMTVSNAIRTLSTFVSERMLAL---DGKRIKIIDCDRLQKTAR 230 (232)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEE---ETTEEEESCHHHHHHHHH
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHCCCEee---CCCEEEEeCHHHHHHHhh
Confidence 56799999999998888888999999987642 345544446777777653
No 176
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=74.56 E-value=3.8 Score=32.56 Aligned_cols=50 Identities=14% Similarity=0.123 Sum_probs=39.2
Q ss_pred cchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHH
Q 025511 157 IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVAD 209 (251)
Q Consensus 157 V~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~ 209 (251)
+...+||...|++.+-+-.-++.|.++|.|.= ++|+++-+.++.+.++|.
T Consensus 176 ~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~---~~~~i~i~d~~~L~~~a~ 225 (231)
T 3e97_A 176 LGTQDIMARTSSSRETVSRVLKRLEAHNILEV---SPRSVTLLDLAALEALSF 225 (231)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE---CSSCEEESCHHHHHHCC-
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEe---cCCEEEEeCHHHHHHHHh
Confidence 56899999999988888888999999988752 466666667777777664
No 177
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=74.47 E-value=13 Score=27.28 Aligned_cols=52 Identities=17% Similarity=0.293 Sum_probs=43.6
Q ss_pred HHHHHHHhcCccchHhHHhHcC----CChHHHHHHHHHHHhcCCcceeeeCCCceEE
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFK----LRTQECINRITSLENMGRLSGVMDDRGKYIY 198 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~Fg----LrTqdvI~RIq~Lea~G~LTGViDDRGKFIY 198 (251)
.++.+|-.+.=+...|||..++ ++..-+-.-|+.|++.|-|+=.-|+| .|+|
T Consensus 14 ~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~~~r-~~~~ 69 (126)
T 1sd4_A 14 DVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKSEN-IYFY 69 (126)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETT-EEEE
T ss_pred HHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEeCCC-eEEE
Confidence 4567777777789999999997 57888888999999999999999877 5666
No 178
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=74.28 E-value=4.7 Score=36.63 Aligned_cols=45 Identities=20% Similarity=0.298 Sum_probs=38.5
Q ss_pred HHHHHHH-HHHhcCccchHhHHhHc--CCChHHHHHHHHHHHhcCCcc
Q 025511 143 LLADFVE-YIKKHKCIPLEDLAAEF--KLRTQECINRITSLENMGRLS 187 (251)
Q Consensus 143 lL~~FI~-YIK~~KVV~LEDLAa~F--gLrTqdvI~RIq~Lea~G~LT 187 (251)
.|...++ ||+.+.-|-..+||..| |++..-+.+=+.+|++.|.|.
T Consensus 22 IL~~i~~~yl~~~~pV~s~~La~~~~l~VS~aTIRrDL~~LE~~GlL~ 69 (338)
T 1stz_A 22 VLYCIVREYIENKKPVSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIY 69 (338)
T ss_dssp HHHHHHHHHHHHCSCBCHHHHHHHSCCCSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHcCCCccHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3443333 89999999999999999 998888888999999999985
No 179
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=74.27 E-value=5.3 Score=32.20 Aligned_cols=51 Identities=12% Similarity=0.176 Sum_probs=40.3
Q ss_pred cchHhHHhHcCCCh-HHHHHHHHHHHhcCCcceeeeCCCceEEE-cHHHHHHHHHHH
Q 025511 157 IPLEDLAAEFKLRT-QECINRITSLENMGRLSGVMDDRGKYIYI-SQAEMKAVADYI 211 (251)
Q Consensus 157 V~LEDLAa~FgLrT-qdvI~RIq~Lea~G~LTGViDDRGKFIYI-S~EEm~aVA~fI 211 (251)
+...+||...|++. +-+-.-++.|.++|.|.- ++| .|+| .++.+.++|.|+
T Consensus 170 ~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~---~~~-~i~I~d~~~L~~~~~~~ 222 (238)
T 2bgc_A 170 LTMQELGYSSGIAHSSAVSRIISKLKQEKVIVY---KNS-CFYVQNLDYLKRYAPKL 222 (238)
T ss_dssp CCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEE---ETT-EEEESCHHHHHHHCHHH
T ss_pred CCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEe---cCC-EEEEeCHHHHHHHhcCC
Confidence 55789999999999 787778899999987642 244 4555 788999999885
No 180
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=74.20 E-value=1 Score=35.71 Aligned_cols=72 Identities=15% Similarity=0.340 Sum_probs=49.6
Q ss_pred HHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceee---eCC--Cc----eEEE-----cHHHHHHHHHH
Q 025511 145 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVM---DDR--GK----YIYI-----SQAEMKAVADY 210 (251)
Q Consensus 145 ~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGVi---DDR--GK----FIYI-----S~EEm~aVA~f 210 (251)
...++.++..--+...+||..||++..-|-++|+.|++.|-|.+.. |.. |. ++.+ |++.++.+...
T Consensus 16 ~~Il~~l~~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~Gli~~~v~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~ 95 (163)
T 2gqq_A 16 RNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTA 95 (163)
T ss_dssp HHHHHHHHHCSSCCTTGGGTSSSCCTTTSSSTHHHHHHHTSEEEEEEEECTTTTTCCCEEEEEEECCCCSTTHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEEEeCCHHHcCCceEEEEEEEeccCChhHHHHHHHH
Confidence 4455556655555899999999999999999999999999998643 221 21 1222 45566666666
Q ss_pred HHhcCC
Q 025511 211 IKRQGR 216 (251)
Q Consensus 211 I~qrGR 216 (251)
+.....
T Consensus 96 l~~~~~ 101 (163)
T 2gqq_A 96 VQKLEE 101 (163)
T ss_dssp HSSCTT
T ss_pred HHhChh
Confidence 655433
No 181
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=74.15 E-value=16 Score=28.46 Aligned_cols=57 Identities=21% Similarity=0.213 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCc------cchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHH
Q 025511 144 LADFVEYIKKHKC------IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAE 203 (251)
Q Consensus 144 L~~FI~YIK~~KV------V~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EE 203 (251)
...+.+.|..... -...+||..||++..-|-.-++.|+.+|.|.- .+|+=.||++--
T Consensus 10 ~~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~---~~g~G~~V~~~~ 72 (129)
T 2ek5_A 10 ASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYK---KRGIGMFVSAQA 72 (129)
T ss_dssp HHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEE---ETTTEEEECTTH
T ss_pred HHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE---ecCCEEEEecCc
Confidence 3445566665543 35779999999999999999999999998754 345555665543
No 182
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=71.68 E-value=6.7 Score=30.94 Aligned_cols=49 Identities=14% Similarity=0.232 Sum_probs=36.7
Q ss_pred cchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEE-cHHHHHHHH
Q 025511 157 IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYI-SQAEMKAVA 208 (251)
Q Consensus 157 V~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYI-S~EEm~aVA 208 (251)
+...+||...|++.+-+-.-+++|.++|.|. .+++| .|.| .++.+.++|
T Consensus 168 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~--~~~~~-~i~i~d~~~L~~~~ 217 (220)
T 2fmy_A 168 LNTEEIALMLGTTRQTVSVLLNDFKKMGILE--RVNQR-TLLLKDLQKLKEFS 217 (220)
T ss_dssp SCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE--ESSSS-EEEESCHHHHHHHC
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE--EcCCC-EEEEcCHHHHHHHh
Confidence 5678999999998888888899999998763 11144 6666 677776654
No 183
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=71.16 E-value=7.9 Score=31.72 Aligned_cols=53 Identities=25% Similarity=0.266 Sum_probs=41.7
Q ss_pred cchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEE-EcHHHHHHHHHH
Q 025511 157 IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIY-ISQAEMKAVADY 210 (251)
Q Consensus 157 V~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIY-IS~EEm~aVA~f 210 (251)
++-.+||..||++..-|-+-++.|+.+|-|+- .--+|-||- +|++++..+-..
T Consensus 40 L~E~~La~~lgVSRtpVREAl~~L~~eGlv~~-~~~~G~~V~~~~~~~~~e~~~~ 93 (222)
T 3ihu_A 40 LVETDLVAHFGVGRNSVREALQRLAAEGIVDL-QRHRGAVIRRLSLQETLDVLDV 93 (222)
T ss_dssp ECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-CSTTCEEECCCCHHHHHHHHHH
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE-ecCCCeEEecCCHHHHHHHHHH
Confidence 34889999999999999999999999999873 345777764 566766655443
No 184
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=70.15 E-value=9.4 Score=29.40 Aligned_cols=69 Identities=9% Similarity=0.129 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHHhcCc------cchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHH
Q 025511 141 RDLLADFVEYIKKHKC------IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIK 212 (251)
Q Consensus 141 q~lL~~FI~YIK~~KV------V~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~ 212 (251)
+.....+.+.|..... -...+||.+||++..-|..-++.|+.+|-|.-+ +|+=.||++-....+....+
T Consensus 14 ~~i~~~l~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~---~~~G~~V~~~~~~~~~~~~~ 88 (126)
T 3ic7_A 14 LQIADRICDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNK---RGIGFFVASGAKMLIHSLRK 88 (126)
T ss_dssp THHHHHHHHHHHTTSSCBTSEECCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEE---TTTEEEECTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEE---cCCccEEccCcHHHHHHHHH
Confidence 3445566666765544 367799999999999999999999999987654 55556667665555554443
No 185
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=69.88 E-value=7.1 Score=32.80 Aligned_cols=52 Identities=10% Similarity=0.153 Sum_probs=39.7
Q ss_pred CccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEE-EcHHHHHHHH
Q 025511 155 KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIY-ISQAEMKAVA 208 (251)
Q Consensus 155 KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIY-IS~EEm~aVA 208 (251)
++ .-.+||..||++..-|-+-|+.|+.+|.|.- .--+|-||- +|.+++..+-
T Consensus 51 ~L-~e~~La~~lgVSRtpVREAL~~L~~eGlv~~-~~~~G~~V~~~~~~~~~el~ 103 (239)
T 2hs5_A 51 RL-SEPDICAALDVSRNTVREAFQILIEDRLVAH-ELNRGVFVRVPTAEDITELY 103 (239)
T ss_dssp EE-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-ETTTEEEECCCCHHHHHHHH
T ss_pred Ee-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE-eCCCeeEEeCCCHHHHHHHH
Confidence 44 7889999999999999999999999998863 344676664 4555554443
No 186
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=68.36 E-value=4.4 Score=29.93 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=29.9
Q ss_pred cCccchHhHHhHcCCChHHHHHHHHHHHhcCCcc
Q 025511 154 HKCIPLEDLAAEFKLRTQECINRITSLENMGRLS 187 (251)
Q Consensus 154 ~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LT 187 (251)
+.=....++|++||.+.+.+.+++..|-.+|+|-
T Consensus 16 ~QGMTaGEVAA~f~w~Le~ar~aLeqLf~~G~LR 49 (68)
T 3i71_A 16 RQGMTAGEVAAHFGWPLEKARNALEQLFSAGTLR 49 (68)
T ss_dssp TTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred hccccHHHHHHHhCCcHHHHHHHHHHHHhcchhh
Confidence 3446678999999999999999999999999874
No 187
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=68.29 E-value=5.3 Score=30.84 Aligned_cols=52 Identities=15% Similarity=0.284 Sum_probs=38.0
Q ss_pred HHHHHHHHhcC------ccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceE
Q 025511 145 ADFVEYIKKHK------CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYI 197 (251)
Q Consensus 145 ~~FI~YIK~~K------VV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFI 197 (251)
....+.|.... +-...+||.+||++..-|..-++.|+.+|-|.-. --+|.||
T Consensus 21 ~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~-~g~G~~V 78 (134)
T 4ham_A 21 QKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITV-KGKGTFI 78 (134)
T ss_dssp HHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTTEEEE
T ss_pred HHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEE-cCcEEEE
Confidence 34444554443 3356689999999999999999999999988633 3356665
No 188
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=67.94 E-value=2.9 Score=31.71 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.1
Q ss_pred HHHHHHHHHhcCCccHHHHHhhcc
Q 025511 204 MKAVADYIKRQGRVSISHLASKSN 227 (251)
Q Consensus 204 m~aVA~fI~qrGRVSisELa~~sN 227 (251)
+..+-++|+++|+||+++|++.-|
T Consensus 4 L~~Il~~L~~~g~vsv~eLA~~l~ 27 (87)
T 2k02_A 4 LMEVRDMLALQGRMEAKQLSARLQ 27 (87)
T ss_dssp THHHHHHHHHSCSEEHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHC
Confidence 467889999999999999998765
No 189
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=67.83 E-value=21 Score=26.67 Aligned_cols=65 Identities=11% Similarity=0.191 Sum_probs=47.0
Q ss_pred chHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHH--HHHHhcCCccHHHHHhhcc
Q 025511 158 PLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVA--DYIKRQGRVSISHLASKSN 227 (251)
Q Consensus 158 ~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA--~fI~qrGRVSisELa~~sN 227 (251)
.+.++|..+|+++.- |.--+..|.|..+-.+.|.|=|.|++.+..+. .+.+..| +|+.++...-+
T Consensus 3 ~i~e~A~~~gvs~~t----LR~ye~~Gll~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G-~sl~~I~~~l~ 69 (108)
T 2vz4_A 3 SVGQVAGFAGVTVRT----LHHYDDIGLLVPSERSHAGHRRYSDADLDRLQQILFYRELG-FPLDEVAALLD 69 (108)
T ss_dssp CHHHHHHHHTCCHHH----HHHHHHHTSSCCSEECSSCCEEBCHHHHHHHHHHHHHHHTT-CCHHHHHHHHT
T ss_pred CHHHHHHHHCcCHHH----HHHHHHCCCCCCCccCCCCCeecCHHHHHHHHHHHHHHHCC-CCHHHHHHHHh
Confidence 467899999997654 44556679999887556677778999998765 3344555 88887776543
No 190
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=67.80 E-value=3.7 Score=30.08 Aligned_cols=40 Identities=18% Similarity=0.311 Sum_probs=32.8
Q ss_pred chHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEE
Q 025511 158 PLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIY 198 (251)
Q Consensus 158 ~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIY 198 (251)
...+||..||++..-|-..++.|++.|-|..+ -.+|.||.
T Consensus 37 s~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~-~g~G~~v~ 76 (102)
T 1v4r_A 37 SVADIRAQFGVAAKTVSRALAVLKSEGLVSSR-GALGTVVE 76 (102)
T ss_dssp CHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEE-TTTEEESC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe-CCCeEEEc
Confidence 78999999999999999999999999998643 23455543
No 191
>2lyc_A Spindle and kinetochore-associated protein 1 HOMO; SKA1, microtubule, SKA1-MTBD, protein binding; NMR {Caenorhabditis elegans}
Probab=67.66 E-value=1.2 Score=36.54 Aligned_cols=29 Identities=21% Similarity=0.457 Sum_probs=24.8
Q ss_pred EEcHHHHHHHHHHHHhcCCccHHHHHhhccc
Q 025511 198 YISQAEMKAVADYIKRQGRVSISHLASKSNQ 228 (251)
Q Consensus 198 YIS~EEm~aVA~fI~qrGRVSisELa~~sN~ 228 (251)
|||.+|+++|-+|++ ||+|...|-++.+.
T Consensus 9 ~IT~eEF~sIPkYmr--GRlTle~lN~~i~~ 37 (130)
T 2lyc_A 9 QITDEEFKTIPKYQL--GRLTLEMMNEIVSK 37 (130)
T ss_dssp CCCHHHHTTSCHHHH--SSCCHHHHHHHHHH
T ss_pred eecHHHHhccCHHHH--hhccHHHHHHHHHH
Confidence 899999999999997 99998777665554
No 192
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=67.62 E-value=8.7 Score=28.21 Aligned_cols=77 Identities=10% Similarity=0.172 Sum_probs=52.6
Q ss_pred chhHHHHHHHHHHhc--CccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHhcCCc
Q 025511 140 DRDLLADFVEYIKKH--KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRV 217 (251)
Q Consensus 140 sq~lL~~FI~YIK~~--KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~qrGRV 217 (251)
.+..+...++||..+ .-+.+++||..+|++..-.-...+..- |+- =.=||..-=|...+..+.. +..
T Consensus 5 ~~~~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~------G~s----~~~~~~~~Rl~~A~~lL~~-~~~ 73 (113)
T 3oio_A 5 SQPKLTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYL------GTV----PSKYYLELRLNRARQLLQQ-TSK 73 (113)
T ss_dssp GCHHHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHT------SSC----HHHHHHHHHHHHHHHHHHH-CCC
T ss_pred chHHHHHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHHH------CcC----HHHHHHHHHHHHHHHHHHc-CCC
Confidence 456789999999885 568999999999998887777666532 210 0113444445566666654 567
Q ss_pred cHHHHHhhcc
Q 025511 218 SISHLASKSN 227 (251)
Q Consensus 218 SisELa~~sN 227 (251)
||+++|..|.
T Consensus 74 ~i~eIA~~~G 83 (113)
T 3oio_A 74 SIVQIGLACG 83 (113)
T ss_dssp CHHHHHHHTT
T ss_pred CHHHHHHHHC
Confidence 8888887663
No 193
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=66.66 E-value=14 Score=31.14 Aligned_cols=54 Identities=24% Similarity=0.444 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcC------ccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceE
Q 025511 143 LLADFVEYIKKHK------CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYI 197 (251)
Q Consensus 143 lL~~FI~YIK~~K------VV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFI 197 (251)
....+.+.|.... +-...+||.+||++..-|.+-++.|.++|.|.-+ --+|.||
T Consensus 10 i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~g~i~~~-~g~G~~V 69 (239)
T 3bwg_A 10 IATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQV-RGSGIFV 69 (239)
T ss_dssp HHHHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE-TTTEEEE
T ss_pred HHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEe-CCceEEE
Confidence 3455566676543 3357899999999999999999999999998643 3345444
No 194
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=66.57 E-value=31 Score=26.19 Aligned_cols=81 Identities=9% Similarity=0.128 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeC--CCc-eEEEcHHHHHHHHHHHHhcCCc
Q 025511 141 RDLLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDD--RGK-YIYISQAEMKAVADYIKRQGRV 217 (251)
Q Consensus 141 q~lL~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDD--RGK-FIYIS~EEm~aVA~fI~qrGRV 217 (251)
.+.-...+...+.. ....++|..||++..-|-.-++.....|.+ .+. .|. --.+|++....|..++...+..
T Consensus 35 ~e~r~~iv~~~~~G--~s~~~iA~~lgis~~TV~rw~~~~~~~G~~---~~~~r~gr~~~~~~~~~~~~I~~~~~~~~~~ 109 (149)
T 1k78_A 35 DVVRQRIVELAHQG--VRPCDISRQLRVSHGCVSKILGRYYETGSI---KPGVIGGSKPKVATPKVVEKIAEYKRQNPTM 109 (149)
T ss_dssp HHHHHHHHHHHHTT--CCHHHHHHHHTCCHHHHHHHHHHHHHHSCC---CCCCCCCCCCSSSCHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHCcCHHHHHHHHHHHHHcCCC---CccCCCCCCCCCCCHHHHHHHHHHHHhCcch
Confidence 34444556555433 567899999999888777777888877753 221 232 3346899999999999998899
Q ss_pred cHHHHHhhc
Q 025511 218 SISHLASKS 226 (251)
Q Consensus 218 SisELa~~s 226 (251)
|..+|+...
T Consensus 110 s~~~i~~~l 118 (149)
T 1k78_A 110 FAWEIRDRL 118 (149)
T ss_dssp CHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 988887664
No 195
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=66.06 E-value=16 Score=31.44 Aligned_cols=55 Identities=24% Similarity=0.345 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCC--CceEEE
Q 025511 143 LLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDR--GKYIYI 199 (251)
Q Consensus 143 lL~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDR--GKFIYI 199 (251)
.....++++....-|...+||..||.++.-+.+.|..++.+|.+ ++||. |-|-|.
T Consensus 155 ~~~~il~~~~~~g~vt~~~la~~l~ws~~~a~e~L~~~e~~G~l--~~D~~~eg~~y~p 211 (218)
T 3cuq_B 155 MVASALETVSEKGSLTSEEFAKLVGMSVLLAKERLLLAEKMGHL--CRDDSVEGLRFYP 211 (218)
T ss_dssp GHHHHHHHHHHTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSE--EEEESSSCEEEEE
T ss_pred HHHHHHHHHHHCCCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCE--EEECCCCceEEeh
Confidence 34556677888999999999999999999999999999999987 57864 543343
No 196
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=65.88 E-value=15 Score=31.16 Aligned_cols=54 Identities=19% Similarity=0.341 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhcC------ccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceE
Q 025511 143 LLADFVEYIKKHK------CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYI 197 (251)
Q Consensus 143 lL~~FI~YIK~~K------VV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFI 197 (251)
....+.+.|.... +-...+||.+||++..-+..-++.|+.+|.|.-+ --+|.||
T Consensus 15 i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~-~g~G~~V 74 (243)
T 2wv0_A 15 IMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRL-KGRGTFV 74 (243)
T ss_dssp HHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-TTSCEEE
T ss_pred HHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEe-CCCeEEE
Confidence 3445556676543 3367899999999999999999999999998642 2345454
No 197
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=64.69 E-value=13 Score=30.77 Aligned_cols=55 Identities=15% Similarity=0.216 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCc-----c-chHhHHhHcCCChHHHHHHHHHHHhcCCcce-eeeC--CCceEE
Q 025511 144 LADFVEYIKKHKC-----I-PLEDLAAEFKLRTQECINRITSLENMGRLSG-VMDD--RGKYIY 198 (251)
Q Consensus 144 L~~FI~YIK~~KV-----V-~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTG-ViDD--RGKFIY 198 (251)
.....+.|...+. + .-.+||..||++..-|-+-|+.|+.+|-|.- +.-- +|-||-
T Consensus 10 ~~~L~~~I~~g~l~pG~~LpsE~~La~~lgVSRtpVREAL~~L~~~GlV~~~~~~~~~~G~~V~ 73 (239)
T 2di3_A 10 MDWVTEELRSGRLKIGDHLPSERALSETLGVSRSSLREALRVLEALGTISTATGSGPRSGTIIT 73 (239)
T ss_dssp HHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEECCSTTSGGGCCEEC
T ss_pred HHHHHHHHHhCCCCCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeecccCCCCCceee
Confidence 3445555655443 3 3459999999999999999999999998763 1344 677764
No 198
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=64.58 E-value=18 Score=32.36 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=34.5
Q ss_pred HHHHHHHh--cCccchHhHHhHcCCChHHHHHHHHHHHhcCC
Q 025511 146 DFVEYIKK--HKCIPLEDLAAEFKLRTQECINRITSLENMGR 185 (251)
Q Consensus 146 ~FI~YIK~--~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~ 185 (251)
+.++.++. ...+.-++||.+||++...|-+.|+.|++.|-
T Consensus 7 ~iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~~~G~ 48 (323)
T 3rkx_A 7 DVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQLKLEGC 48 (323)
T ss_dssp HHHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 45566654 46899999999999999999999999999997
No 199
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=64.21 E-value=7.9 Score=33.01 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=36.1
Q ss_pred CccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEE
Q 025511 155 KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIY 198 (251)
Q Consensus 155 KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIY 198 (251)
|+=.-.+||.+||++..-|..-++.|.++|.|.- --+|.||-
T Consensus 35 ~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~--~g~Gt~V~ 76 (248)
T 3f8m_A 35 PFPAEREIAEQFEVARETVRQALRELLIDGRVER--RGRTTVVA 76 (248)
T ss_dssp BCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE--ETTEEEEC
T ss_pred cCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe--CCCEEEEc
Confidence 4446789999999999999999999999999987 66777763
No 200
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A*
Probab=64.15 E-value=33 Score=30.35 Aligned_cols=82 Identities=21% Similarity=0.313 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHHhcC--ccchHhHHhHcCCChHHHHHHHH----HHHhcCCcceeee--CCCceEEEc---HHH----HH
Q 025511 141 RDLLADFVEYIKKHK--CIPLEDLAAEFKLRTQECINRIT----SLENMGRLSGVMD--DRGKYIYIS---QAE----MK 205 (251)
Q Consensus 141 q~lL~~FI~YIK~~K--VV~LEDLAa~FgLrTqdvI~RIq----~Lea~G~LTGViD--DRGKFIYIS---~EE----m~ 205 (251)
.+.|.+...|+-.+. ++.|.++|..||.+..-+-+=|. .|+..|.=+-... ..|-+.||. .++ |+
T Consensus 6 ~~rl~~~~~~l~~~~~~~~~l~~~~~~~~~aks~~s~D~~~~~~~~~~~~~~~~~~~~ga~gg~~~~~~~~~~~a~~~~~ 85 (291)
T 1o57_A 6 SGRLVDLTNYLLTHPHELIPLTFFSERYESAKSSISEDLTIIKQTFEQQGIGTLLTVPGAAGGVKYIPKMKQAEAEEFVQ 85 (291)
T ss_dssp HHHHHHHHHHHHTSTTCCBCHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTSEEEEEECSTTCEEEEEECCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCceEeHHHHHHHhccchhhhhhhHHHHHHHHHhcCCceEEEecCCCCceEEcccCCHHHHHHHHH
Confidence 356778888886654 59999999999999887777777 8888875333322 256666664 554 45
Q ss_pred HHHHHHHhcCCccHHHH
Q 025511 206 AVADYIKRQGRVSISHL 222 (251)
Q Consensus 206 aVA~fI~qrGRVSisEL 222 (251)
.++..|.+.|+|--.+.
T Consensus 86 ~l~~~l~~~~~v~~G~f 102 (291)
T 1o57_A 86 TLGQSLANPERILPGGY 102 (291)
T ss_dssp HHHHHHTCGGGEETTTE
T ss_pred HHHHHHHHCCCcccCCe
Confidence 67788888888764433
No 201
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=63.68 E-value=9.3 Score=32.01 Aligned_cols=42 Identities=17% Similarity=0.052 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcC
Q 025511 143 LLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMG 184 (251)
Q Consensus 143 lL~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G 184 (251)
..+..++++..+..|..+|||..||++.+-+..=+++|...|
T Consensus 13 R~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~~~~ 54 (190)
T 4a0z_A 13 RREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIPE 54 (190)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhcCcc
Confidence 346678899999999999999999998887776677776655
No 202
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=63.57 E-value=44 Score=25.01 Aligned_cols=79 Identities=16% Similarity=0.217 Sum_probs=55.3
Q ss_pred HHHHHHhcCc-cchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHhc-----------
Q 025511 147 FVEYIKKHKC-IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQ----------- 214 (251)
Q Consensus 147 FI~YIK~~KV-V~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~qr----------- 214 (251)
...|+..+.. +...+|+...|+....+-.-+..|.+.|.+.=+ ++.|...||+.+-++++..-|...
T Consensus 7 l~~~L~~~~~~~~~~~l~~~~~l~~~~l~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~L~~yH~~~P~~ 85 (135)
T 2v9v_A 7 LAQIIQEHREGLDWQEAATRASLSLEETRKLLQSMAAAGQVTLL-RVENDLYAISTERYQAWWQAVTRALEEFHSRYPLR 85 (135)
T ss_dssp HHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTCEEEE-EETTEEEEEEHHHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHcCcCCCHHHHHHHhCCCHHHHHHHHHHHHhCCcEEEE-ecCCCeEEecHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 4456666655 334999999999999999899999999997655 432222389999887766655432
Q ss_pred CCccHHHHHhhc
Q 025511 215 GRVSISHLASKS 226 (251)
Q Consensus 215 GRVSisELa~~s 226 (251)
-=++..+|.+..
T Consensus 86 ~G~~keeLr~~~ 97 (135)
T 2v9v_A 86 PGLAREELRSRY 97 (135)
T ss_dssp SCEEHHHHHHHH
T ss_pred cCCCHHHHHHHh
Confidence 224556776654
No 203
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=63.52 E-value=22 Score=27.47 Aligned_cols=43 Identities=21% Similarity=0.148 Sum_probs=24.6
Q ss_pred cccccccccccchhHHHHHHHHHhhhhhhhhHHhHHhhhhhHHH
Q 025511 23 GYESSTRKDTRANSLLLILVCLCTSFLFLLSFSLLFDMFDLKAD 66 (251)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Reae 66 (251)
||-.-+.. |.+.-++.++.+++...+|...++.+...+.....
T Consensus 56 GyGd~~P~-t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~ 98 (139)
T 3eff_K 56 GYGDLYPV-TLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 98 (139)
T ss_dssp CCSSSCCC-SSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHH
T ss_pred cCCCCcCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444332 33444555666666666666777777776655543
No 204
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=63.42 E-value=15 Score=29.51 Aligned_cols=63 Identities=19% Similarity=0.287 Sum_probs=48.4
Q ss_pred CccchHhHHhHc--------CCChHHHHHHHHHHHhcCCcceeeeCC-----CceEEEcHHHHHHHHHHHHhcCCc
Q 025511 155 KCIPLEDLAAEF--------KLRTQECINRITSLENMGRLSGVMDDR-----GKYIYISQAEMKAVADYIKRQGRV 217 (251)
Q Consensus 155 KVV~LEDLAa~F--------gLrTqdvI~RIq~Lea~G~LTGViDDR-----GKFIYIS~EEm~aVA~fI~qrGRV 217 (251)
+-..--||+..| +++...+-.-++.|++.|-|+...+.. =|+..||+.-.+.+..++..-...
T Consensus 14 ~~~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~~~l~~~~~~~~~~ 89 (179)
T 1yg2_A 14 RDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRSALGEWFDQPTAH 89 (179)
T ss_dssp CCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHHHHHHHHHSCCCC
T ss_pred CCCCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHHHHHHHHHhCcccc
Confidence 345555666666 799999999999999999999876542 246689999999999999876543
No 205
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=63.14 E-value=17 Score=29.22 Aligned_cols=65 Identities=14% Similarity=0.114 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHhcCccchHhHHhHcCCCh----HHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHhcC
Q 025511 142 DLLADFVEYIKKHKCIPLEDLAAEFKLRT----QECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQG 215 (251)
Q Consensus 142 ~lL~~FI~YIK~~KVV~LEDLAa~FgLrT----qdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~qrG 215 (251)
.-++.-+.-++.-||.-|-++....||++ +|+++||++....+. ..| ++.+.-+.+|...|...+
T Consensus 28 ~e~~~~~~~l~kLtVaELK~~cr~~GL~~sGkKaeLi~RI~~yl~~~~------~~g---~~D~~rl~ai~~lI~~~~ 96 (114)
T 2rnn_A 28 NEVEETITLMELLKVSELKDICRSVSFPVSGRKAVLQDLIRNFLQNAL------VVG---KSDPYRVQAVKFLIERIR 96 (114)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHTT------CTT---CCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHcCCCcCCcHHHHHHHHHHHHHhcc------ccC---CCCHHHHHHHHHHHHHHh
Confidence 45677888889999999999999999988 999999999988777 223 577889999998888764
No 206
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=62.78 E-value=9.8 Score=37.93 Aligned_cols=55 Identities=24% Similarity=0.367 Sum_probs=46.6
Q ss_pred HHHHHHHhcCccchHhHHhH------cCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEc
Q 025511 146 DFVEYIKKHKCIPLEDLAAE------FKLRTQECINRITSLENMGRLSGVMDDRGKYIYIS 200 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~------FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS 200 (251)
..|.-.|.+|.+...+|=.+ |..++.++-.||..|.+.+-|.=.-||++.|+||.
T Consensus 699 aIVRIMK~rK~l~h~~Lv~ev~~ql~F~p~~~~IKk~Ie~LIereYleR~~~~~~~y~YlA 759 (759)
T 2hye_C 699 AIVRIMKMRKTLGHNLLVSELYNQLKFPVKPGDLKKRIESLIDRDYMERDKDNPNQYHYVA 759 (759)
T ss_dssp HHHHHHHHSSEEETHHHHHHHHHHSSSCCCHHHHHHHHHHHHHTTSCBCCSSCTTEEECCC
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccceecCCCCCCeeEecC
Confidence 35556788998877766433 99999999999999999999999888999999984
No 207
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=62.77 E-value=8.9 Score=24.11 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=26.0
Q ss_pred EEEcHHHHHHHHHHHHhcCCccHHHHHhhc
Q 025511 197 IYISQAEMKAVADYIKRQGRVSISHLASKS 226 (251)
Q Consensus 197 IYIS~EEm~aVA~fI~qrGRVSisELa~~s 226 (251)
|+++++-++.+-.+.+..|+ |.+++.+.+
T Consensus 7 v~l~~~l~~~Ld~~a~~~g~-srS~~ir~a 35 (45)
T 2cpg_A 7 ITLSESVLENLEKMAREMGL-SKSAMISVA 35 (45)
T ss_dssp EEEEHHHHHHHHHHHHHHTC-CHHHHHHHH
T ss_pred EecCHHHHHHHHHHHHHHCc-CHHHHHHHH
Confidence 79999999999999999996 999988753
No 208
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=62.77 E-value=56 Score=25.89 Aligned_cols=72 Identities=13% Similarity=0.154 Sum_probs=53.3
Q ss_pred CccchHhHHhHc--------CCChHHHHHHHHHHHhcCCcceeeeC-----CCceEEEcHHHHHHHHHHHHhcCCccHHH
Q 025511 155 KCIPLEDLAAEF--------KLRTQECINRITSLENMGRLSGVMDD-----RGKYIYISQAEMKAVADYIKRQGRVSISH 221 (251)
Q Consensus 155 KVV~LEDLAa~F--------gLrTqdvI~RIq~Lea~G~LTGViDD-----RGKFIYIS~EEm~aVA~fI~qrGRVSisE 221 (251)
.=..--+|+..+ +++..-+-..++.|++.|-|+-..+. +-|+..||+.-.+.+..++.. ...
T Consensus 53 ~~~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~~-----~~~ 127 (145)
T 1xma_A 53 GDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYYKQKCEE-----WEL 127 (145)
T ss_dssp CCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHHHHHHHHH-----HHH
T ss_pred CCCCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECHHHHHHHHHHHHH-----HHH
Confidence 334555565555 69999999999999999999988653 457889999999888887654 345
Q ss_pred HHhhcccccc
Q 025511 222 LASKSNQFID 231 (251)
Q Consensus 222 La~~sN~lI~ 231 (251)
+.+.-+.++.
T Consensus 128 ~~~~i~~~l~ 137 (145)
T 1xma_A 128 TKKVINKFVK 137 (145)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHHHc
Confidence 5555555554
No 209
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=62.70 E-value=19 Score=26.86 Aligned_cols=54 Identities=19% Similarity=0.149 Sum_probs=43.1
Q ss_pred HHHHHHHh--cCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee---CCCceEEE
Q 025511 146 DFVEYIKK--HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYI 199 (251)
Q Consensus 146 ~FI~YIK~--~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD---DRGKFIYI 199 (251)
-++.+|.. ++=+.--|||.+.||....+-.-|+.|+..|-|.=|-+ ++=|-.|+
T Consensus 24 ~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr~~~~~~~~rKvy~L 82 (91)
T 2dk5_A 24 LVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYML 82 (91)
T ss_dssp HHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCSSCSSCCEEEE
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCCcEEEEE
Confidence 47788887 66899999999999999999999999999999874433 44444443
No 210
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=62.46 E-value=16 Score=30.61 Aligned_cols=44 Identities=11% Similarity=0.274 Sum_probs=37.3
Q ss_pred HHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeC
Q 025511 148 VEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDD 192 (251)
Q Consensus 148 I~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDD 192 (251)
+.++. ..-....+||..+|++..-+-..++.|++.|-|+..-+.
T Consensus 21 L~~L~-~~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~~~ 64 (202)
T 2p4w_A 21 LFLLT-KRPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRVEK 64 (202)
T ss_dssp HHHHH-HSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC
T ss_pred HHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEeec
Confidence 44453 455788999999999999999999999999999998773
No 211
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=62.40 E-value=4 Score=30.06 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=16.6
Q ss_pred HHhcCCcceeeeCCCceEEEcHH
Q 025511 180 LENMGRLSGVMDDRGKYIYISQA 202 (251)
Q Consensus 180 Lea~G~LTGViDDRGKFIYIS~E 202 (251)
|+..+.+.-|+|..|+|+|+||.
T Consensus 5 le~~~d~i~v~d~~G~i~yvn~~ 27 (111)
T 2vlg_A 5 LQTKTDIHAVLASNGRIIYISAN 27 (111)
T ss_dssp ----CCEEEEECTTSBEEEECTT
T ss_pred hhcCCCEEEEEcCCCeEEEEChH
Confidence 45566677789999999999985
No 212
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=62.38 E-value=6.3 Score=32.34 Aligned_cols=53 Identities=11% Similarity=0.082 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCcc------chHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceE
Q 025511 144 LADFVEYIKKHKCI------PLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYI 197 (251)
Q Consensus 144 L~~FI~YIK~~KVV------~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFI 197 (251)
.....+.|...+.- .-.+||..||++..-|-+-|+.|+.+|.|.- .--+|.||
T Consensus 13 ~~~l~~~I~~g~l~pG~~LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~~-~~g~G~~V 71 (239)
T 1hw1_A 13 EEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTI-QHGKPTKV 71 (239)
T ss_dssp HHHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-ETTEEEEE
T ss_pred HHHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEE-ecCCCcEe
Confidence 34455566554432 5779999999999999999999999998763 22345554
No 213
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=61.03 E-value=6.5 Score=34.08 Aligned_cols=55 Identities=18% Similarity=0.239 Sum_probs=42.7
Q ss_pred HHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCccee-eeCC-----CceEEEcHH
Q 025511 147 FVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGV-MDDR-----GKYIYISQA 202 (251)
Q Consensus 147 FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGV-iDDR-----GKFIYIS~E 202 (251)
.+.+|.. .-....+||..+|++..-+-..++.|++.|-|... -+.+ -+|.++++.
T Consensus 17 IL~~L~~-g~~s~~ELa~~lglS~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~~ 77 (232)
T 2qlz_A 17 LLSHLTC-MECYFSLLSSKVSVSSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISIA 77 (232)
T ss_dssp HHHHHTT-TTTCSSSSCTTCCCCHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECCC
T ss_pred HHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEccc
Confidence 5556664 55788899999999999999999999999999983 3334 456667664
No 214
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=60.95 E-value=17 Score=26.80 Aligned_cols=57 Identities=14% Similarity=0.230 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHhc--CccchHhHHhHcCC-ChHHHHHHHHHHHhcCCcceeeeCCCceEEE
Q 025511 141 RDLLADFVEYIKKH--KCIPLEDLAAEFKL-RTQECINRITSLENMGRLSGVMDDRGKYIYI 199 (251)
Q Consensus 141 q~lL~~FI~YIK~~--KVV~LEDLAa~FgL-rTqdvI~RIq~Lea~G~LTGViDDRGKFIYI 199 (251)
..+.+.||+++..+ .++.|+++|..++. ..-=+-|-++=|++-|-|+=. ..++|..+
T Consensus 13 ~~lt~kFi~l~~~~~~~~i~l~~aa~~L~v~~kRRiYDI~NVLe~igli~K~--~k~~~~W~ 72 (76)
T 1cf7_A 13 GLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKK--SKNSIQWK 72 (76)
T ss_dssp HHHHHHHHHHHHHSSTTEEEHHHHHHHTTTCCTHHHHHHHHHHHHHTSEEEE--ETTEEEEC
T ss_pred HHHHHHHHHHHHhCCCCcCcHHHHHHHhCCccceehhhHHHHHhHhcceeec--CCCcEEEe
Confidence 34578999999984 58999999999999 666666667777877766543 34445444
No 215
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=60.41 E-value=46 Score=24.96 Aligned_cols=59 Identities=19% Similarity=0.137 Sum_probs=45.7
Q ss_pred CccchHhHHhHc------C--CCh-HHHHHHHHHHHhcCCcceeeeC----CCceEEEcHHHHHHHHHHHHh
Q 025511 155 KCIPLEDLAAEF------K--LRT-QECINRITSLENMGRLSGVMDD----RGKYIYISQAEMKAVADYIKR 213 (251)
Q Consensus 155 KVV~LEDLAa~F------g--LrT-qdvI~RIq~Lea~G~LTGViDD----RGKFIYIS~EEm~aVA~fI~q 213 (251)
.=..--+|+..+ + ++. ..+-.-+..|++.|-|+...+. +-|+.+||+.-.+.+..++..
T Consensus 25 ~~~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~~G~~~l~~~~~~ 96 (118)
T 2esh_A 25 KPSHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLYLREILRS 96 (118)
T ss_dssp SCBCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEChHHHHHHHHHHHH
Confidence 334455566665 3 777 8888899999999999998853 347889999999998888765
No 216
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=60.06 E-value=41 Score=25.87 Aligned_cols=58 Identities=16% Similarity=0.198 Sum_probs=47.7
Q ss_pred HHHHHhcCccchHhHHh-HcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHH
Q 025511 148 VEYIKKHKCIPLEDLAA-EFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVAD 209 (251)
Q Consensus 148 I~YIK~~KVV~LEDLAa-~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~ 209 (251)
+-+|..+--+.+.|||. ..+|...-+-.-|+-|+.+|-|. -|..| +.+|++-...+..
T Consensus 22 L~~L~~~~~~t~~~Lae~~l~~drstvsrnl~~L~r~GlVe--~~~~D--l~LT~~G~~~l~~ 80 (95)
T 1bja_A 22 LITIAKKDFITAAEVREVHPDLGNAVVNSNIGVLIKKGLVE--KSGDG--LIITGEAQDIISN 80 (95)
T ss_dssp HHHHHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSEE--EETTE--EEECHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHhcccHHHHHHHHHHHHHCCCee--cCCCC--eeeCHhHHHHHHH
Confidence 44566677999999999 99999998888899999999999 44445 8899987766543
No 217
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=59.86 E-value=36 Score=26.58 Aligned_cols=64 Identities=16% Similarity=0.229 Sum_probs=47.2
Q ss_pred chHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHH--HHHHhcCCccHHHHHhhc
Q 025511 158 PLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVA--DYIKRQGRVSISHLASKS 226 (251)
Q Consensus 158 ~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA--~fI~qrGRVSisELa~~s 226 (251)
.+.++|..+|+++.- |.--+..|.|..+-.+.|.|=|-|++.+..+. .+.+..| +|+.++...-
T Consensus 2 ~I~e~A~~~gvs~~t----LR~ye~~Gll~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G-~sl~eI~~~l 67 (135)
T 1q06_A 2 NISDVAKITGLTSKA----IRFYEEKGLVTPPMRSENGYRTYTQQHLNELTLLRQARQVG-FNLEESGELV 67 (135)
T ss_dssp CHHHHHHHHTCCHHH----HHHHHHTTCSCCCEECTTSCEECCHHHHHHHHHHHHHHHTT-CCHHHHHHHH
T ss_pred CHHHHHHHHCcCHHH----HHHHHHCCCCCCCccCCCCCeeeCHHHHHHHHHHHHHHHCC-CCHHHHHHHH
Confidence 467899999997654 45668899999875556677788999998765 3445556 8887777654
No 218
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=59.25 E-value=51 Score=28.11 Aligned_cols=70 Identities=19% Similarity=0.224 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHH-HHHHHHHHH
Q 025511 142 DLLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAE-MKAVADYIK 212 (251)
Q Consensus 142 ~lL~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EE-m~aVA~fI~ 212 (251)
+-..+.+.|++ .=+++...||...|++-..+-.-|..|+.+|.+.-|-=-+-.|.-+++.. +++|+.+++
T Consensus 11 erk~~ILE~Lk-~G~~~t~~Iak~LGlShg~aq~~Ly~LeREG~V~~Vk~GK~ayw~L~~s~y~~kV~dilr 81 (165)
T 2vxz_A 11 VRLRDILALLA-DGCKTTSLIQQRLGLSHGRAKALIYVLEKEGRVTRVAFGNVALVCLSMDQYRQLVDGMIR 81 (165)
T ss_dssp HHHHHHHHHHT-TCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEEETTEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hCCccHHHHHHHhCCcHHHHHHHHHHHHhcCceEEEEEccEEEEEecHHHHHHHHHHHHH
Confidence 34567889999 99999999999999999999999999999999998865555566666554 345555544
No 219
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=58.59 E-value=8.5 Score=35.29 Aligned_cols=54 Identities=19% Similarity=0.224 Sum_probs=43.9
Q ss_pred HHHHHHhcCccchHh--------HHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEc
Q 025511 147 FVEYIKKHKCIPLED--------LAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYIS 200 (251)
Q Consensus 147 FI~YIK~~KVV~LED--------LAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS 200 (251)
.|.-.|.+|.+...+ |...|..++.++-.||..|.+.+-|-=.=||++.|.||.
T Consensus 321 IVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYleR~~~d~~~y~YlA 382 (382)
T 3dpl_C 321 IIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINTFIYMA 382 (382)
T ss_dssp HHHHHTTSSEECHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred EehhhhccCcccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhhhccCCCCCCeEEEcC
Confidence 344456777665544 556799999999999999999999999888899999984
No 220
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=58.41 E-value=53 Score=24.24 Aligned_cols=60 Identities=10% Similarity=0.072 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHH
Q 025511 143 LLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVA 208 (251)
Q Consensus 143 lL~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA 208 (251)
-+-+.+.+|... +...+||...||+...+-..+..|++.|-|.=. +|. .+||+.-.+.+.
T Consensus 9 Ii~~IL~~i~~~--~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~---~~~-~~LT~kG~~~l~ 68 (95)
T 1r7j_A 9 IIQAILEACKSG--SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQE---GKQ-YMLTKKGEELLE 68 (95)
T ss_dssp HHHHHHHHHTTC--BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE---TTE-EEECHHHHHHHH
T ss_pred HHHHHHHHHHcC--CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEE---CCe-eEEChhHHHHHH
Confidence 355677788755 889999999999999999999999999998654 344 569998774433
No 221
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=57.95 E-value=5 Score=31.84 Aligned_cols=44 Identities=27% Similarity=0.322 Sum_probs=40.0
Q ss_pred EcHHHHHHHHHHHHhcCCccHHHHHhhcccccccccccchhhhh
Q 025511 199 ISQAEMKAVADYIKRQGRVSISHLASKSNQFIDLETKAQFVEDL 242 (251)
Q Consensus 199 IS~EEm~aVA~fI~qrGRVSisELa~~sN~lI~L~p~~~~~~~~ 242 (251)
+|++|+.+||..+...|.|+-.|+....+++.+=.|..+|.+..
T Consensus 39 Ltdeev~~Va~~L~~~~~i~~~dI~~~I~~vt~~~Ps~eDI~RV 82 (103)
T 2kvc_A 39 LSHDEVKAVANELMRLGDFDQIDIGVVITHFTDELPSPEDVERV 82 (103)
T ss_dssp SCHHHHHHHHHHHHHHTSSCSSCHHHHHHSCCSSCSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccCCCHHHHHHH
Confidence 79999999999999999999999999999999999998887544
No 222
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=57.70 E-value=21 Score=29.64 Aligned_cols=75 Identities=15% Similarity=0.213 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHhc--CccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHhcCCcc
Q 025511 141 RDLLADFVEYIKKH--KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVS 218 (251)
Q Consensus 141 q~lL~~FI~YIK~~--KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~qrGRVS 218 (251)
+..+...++||..+ .-..|++||..+|++..-.-...+..- |+ .=.=||..-=|...+..++. +..|
T Consensus 2 ~~~~~~~~~~i~~~~~~~~~~~~la~~~~~s~~~l~r~f~~~~------g~----s~~~~~~~~Rl~~a~~~L~~-~~~~ 70 (292)
T 1d5y_A 2 AGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVT------GH----AIGAYIRARRLSKSAVALRL-TARP 70 (292)
T ss_dssp HHHHHHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHHHHH------SS----CHHHHHHHHHHHHHHHHHHH-CCCC
T ss_pred hHHHHHHHHHHHhCCCCCCCHHHHHHHHCcCHHHHHHHHHHHH------Cc----CHHHHHHHHHHHHHHHHHhc-CCCC
Confidence 35688999999886 678999999999998766555544321 10 00113333334444445543 3456
Q ss_pred HHHHHhhc
Q 025511 219 ISHLASKS 226 (251)
Q Consensus 219 isELa~~s 226 (251)
++++|..|
T Consensus 71 i~~ia~~~ 78 (292)
T 1d5y_A 71 ILDIALQY 78 (292)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 66666554
No 223
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=57.42 E-value=28 Score=24.55 Aligned_cols=66 Identities=18% Similarity=0.277 Sum_probs=46.2
Q ss_pred ccchHhHHhHcCCChHHHHHHHHHHHhc-CCcceeeeCCCceEEEcHHHHHHHH--HHHH-hcCCccHHHHHhhc
Q 025511 156 CIPLEDLAAEFKLRTQECINRITSLENM-GRLSGVMDDRGKYIYISQAEMKAVA--DYIK-RQGRVSISHLASKS 226 (251)
Q Consensus 156 VV~LEDLAa~FgLrTqdvI~RIq~Lea~-G~LTGViDDRGKFIYIS~EEm~aVA--~fI~-qrGRVSisELa~~s 226 (251)
...+.++|..+|+++.- |.--+.. |.+...-++.|.|-|.|++++..+. ...+ +.| +|+.++.+.-
T Consensus 5 ~~~i~e~A~~~gvs~~t----lR~ye~~~gl~~p~r~~~~g~R~Y~~~dl~~l~~I~~l~~~~G-~sl~ei~~~l 74 (81)
T 2jml_A 5 TLRIRTIARMTGIREAT----LRAWERRYGFPRPLRSEGNNYRVYSREEVEAVRRVARLIQEEG-LSVSEAIAQV 74 (81)
T ss_dssp CEEHHHHHHTTSTTHHH----HHHHHHHTCCSCCBSSSCSSSCEECHHHHHHHHHHHHHHHHTS-THHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHH----HHHHHHhCCCCCCcCCCCCCeeecCHHHHHHHHHHHHHHHHCC-CCHHHHHHHH
Confidence 35678999999997654 4455665 7777666654678888999998765 3444 445 8887776543
No 224
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=57.38 E-value=17 Score=32.17 Aligned_cols=79 Identities=16% Similarity=0.318 Sum_probs=47.6
Q ss_pred HHHHHhhhccceeccCCccchhcccCchhHHHHHHHHHHhcCccch----HhHHhHc---CCChHHHHHHHHHHHhcCCc
Q 025511 114 AFEFEKWKGEFSIDAEGTTENEVQDGDRDLLADFVEYIKKHKCIPL----EDLAAEF---KLRTQECINRITSLENMGRL 186 (251)
Q Consensus 114 ~EEY~KwK~~f~VEeeG~~~~e~ee~sq~lL~~FI~YIK~~KVV~L----EDLAa~F---gLrTqdvI~RIq~Lea~G~L 186 (251)
...+..++..+- +... .-+--..|..-|+|||..+...- .++.... .++.++.-.- -|++.+.+
T Consensus 28 n~~~~~l~~~~p----~~~~---~~dk~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~a~~~~ 98 (361)
T 4f3l_A 28 NVLIKELGSMLP----GNAR---KMDKSTVLQKSIDFLRKHKETTAQSDASEIRQDWKPTFLSNEEFTQL--MLEALDGF 98 (361)
T ss_dssp HHHHHHHHHTCC----SSSC---CCCHHHHHHHHHHHHHHHHHHHTSCSCGGGTSCCSCTTSCHHHHHHH--HHHHTTEE
T ss_pred HHHHHHHHHhCC----CCCC---CcCHHHHHHHHHHHHHHHHhhcccccccccccccCcccccHHHHHHH--HHHhcCce
Confidence 466777777765 1111 12234679999999998775431 1111111 1222333222 25777888
Q ss_pred ceeeeCCCceEEEcH
Q 025511 187 SGVMDDRGKYIYISQ 201 (251)
Q Consensus 187 TGViDDRGKFIYIS~ 201 (251)
.-|+|..|+++|+|+
T Consensus 99 i~v~~~~G~i~yvs~ 113 (361)
T 4f3l_A 99 FLAIMTDGSIIYVSE 113 (361)
T ss_dssp EEEEETTSBEEEECT
T ss_pred EEEEcCCccEEEEec
Confidence 889999999999996
No 225
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=56.92 E-value=24 Score=29.68 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=33.6
Q ss_pred cCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceE
Q 025511 154 HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYI 197 (251)
Q Consensus 154 ~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFI 197 (251)
.++ ...+||..||++..-|-+-|+.|+.+|.|.-+ --+|-||
T Consensus 48 ~~L-~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~-~~~G~~V 89 (237)
T 3c7j_A 48 TAL-RQQELATLFGVSRMPVREALRQLEAQSLLRVE-THKGAVV 89 (237)
T ss_dssp CBC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE-TTTEEEE
T ss_pred Cee-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe-CCCceEE
Confidence 344 89999999999999999999999999987633 2345443
No 226
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=56.77 E-value=39 Score=24.81 Aligned_cols=76 Identities=7% Similarity=0.022 Sum_probs=54.3
Q ss_pred HHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHhcCCccHHHHHh
Q 025511 145 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVSISHLAS 224 (251)
Q Consensus 145 ~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~qrGRVSisELa~ 224 (251)
...+.+.+.. ....++|..||++..-|-.-++.....|... ..|+---+|+++...|..+ ...+..|..+|+.
T Consensus 13 ~~i~~~~~~G--~s~~~ia~~lgis~~Tv~r~~~~~~~~g~~~----~~gr~~~l~~~~~~~i~~~-~~~~~~s~~~i~~ 85 (141)
T 1u78_A 13 AQLDVMKLLN--VSLHEMSRKISRSRHCIRVYLKDPVSYGTSK----RAPRRKALSVRDERNVIRA-ASNSCKTARDIRN 85 (141)
T ss_dssp HHHHHHHHTT--CCHHHHHHHHTCCHHHHHHHHHSGGGTTCCC----CCCCCCSSCHHHHHHHHHH-HHHCCCCHHHHHH
T ss_pred HHHHHHHHcC--CCHHHHHHHHCcCHHHHHHHHHcccccCCcC----CCCCCCcCCHHHHHHHHHH-HhCCCCCHHHHHH
Confidence 3445555433 4788999999998887777777666655432 2565555799998888888 6678899988887
Q ss_pred hcc
Q 025511 225 KSN 227 (251)
Q Consensus 225 ~sN 227 (251)
.-|
T Consensus 86 ~lg 88 (141)
T 1u78_A 86 ELQ 88 (141)
T ss_dssp HTT
T ss_pred HHC
Confidence 653
No 227
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=56.65 E-value=16 Score=32.97 Aligned_cols=44 Identities=16% Similarity=0.110 Sum_probs=39.6
Q ss_pred HHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcce
Q 025511 145 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSG 188 (251)
Q Consensus 145 ~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTG 188 (251)
...+++|..+.-+.-.|||..+||+..-|-+++++|++.|.|..
T Consensus 42 ~~il~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L~~~gli~~ 85 (429)
T 1z05_A 42 GRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIHE 85 (429)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 45788999999999999999999999999999999999987643
No 228
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=55.70 E-value=19 Score=35.88 Aligned_cols=55 Identities=24% Similarity=0.333 Sum_probs=45.8
Q ss_pred HHHHHHHhcCccchHh--------HHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEc
Q 025511 146 DFVEYIKKHKCIPLED--------LAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYIS 200 (251)
Q Consensus 146 ~FI~YIK~~KVV~LED--------LAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS 200 (251)
..|.-.|.+|.+...+ |...|..++.++-.||..|.+.+-|.-.-||++.|+|+.
T Consensus 698 aIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYl~R~~~~~~~y~YlA 760 (760)
T 1ldj_A 698 AIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 760 (760)
T ss_dssp HHHHHHHHSSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECSSSTTEEEECC
T ss_pred eehhhhhccCCCcHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhccceeeCCCCCcceeeCC
Confidence 3455668888876555 445699999999999999999999999888999999984
No 229
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=55.59 E-value=13 Score=30.16 Aligned_cols=46 Identities=9% Similarity=0.063 Sum_probs=32.5
Q ss_pred cchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHH
Q 025511 157 IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMK 205 (251)
Q Consensus 157 V~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~ 205 (251)
+...|||...|++.+-+-.-+++|.++|.|.- ++|+++-+.++.|.
T Consensus 194 lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~---~~~~i~I~d~~~L~ 239 (243)
T 3la7_A 194 LSHQAIAEAIGSTRVTVTRLLGDLREKKMISI---HKKKITVHKPVTLS 239 (243)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE---ETTEEEECC-----
T ss_pred CCHHHHHHHHCCcHHHHHHHHHHHHHCCCEEE---cCCEEEECCHHHHH
Confidence 46789999999998888888999999998762 35555544555444
No 230
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=55.28 E-value=27 Score=29.47 Aligned_cols=56 Identities=11% Similarity=0.146 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcC------ccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcH
Q 025511 143 LLADFVEYIKKHK------CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQ 201 (251)
Q Consensus 143 lL~~FI~YIK~~K------VV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~ 201 (251)
.-+.+.+.|.... +=.-.+||.+||++..-+..-|+.|+++|.|... +|+=.||++
T Consensus 14 i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~---~g~G~~V~~ 75 (236)
T 3edp_A 14 IASKIKDSINRDEYKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRK---NGVGLYVQP 75 (236)
T ss_dssp HHHHHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE---TTTEEEECC
T ss_pred HHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE---CCceEEEcc
Confidence 3455566666533 3367899999999999999999999999997654 444444443
No 231
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=55.21 E-value=37 Score=26.39 Aligned_cols=64 Identities=11% Similarity=0.245 Sum_probs=48.6
Q ss_pred cCCChHHHHHHHHHHHhcCCcceeeeC---CCc-eEEEcHHHHHHHHHHHHhcCCccHHHHHhhccccccccc
Q 025511 166 FKLRTQECINRITSLENMGRLSGVMDD---RGK-YIYISQAEMKAVADYIKRQGRVSISHLASKSNQFIDLET 234 (251)
Q Consensus 166 FgLrTqdvI~RIq~Lea~G~LTGViDD---RGK-FIYIS~EEm~aVA~fI~qrGRVSisELa~~sN~lI~L~p 234 (251)
++++..-+---+..|++.|-|+...++ +.+ |..||+.-...+..+... ...+...-|+++.=.+
T Consensus 48 ~~is~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~LT~~Gr~~l~~~~~~-----~~~~~~~i~~il~~~~ 115 (123)
T 3ri2_A 48 IPIEANTLYPLMRRLESQGLLASEWDNGGSKPRKYYRTTDEGLRVLREVEAQ-----WHVLCDGVGKLLETNG 115 (123)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEECHHHHHHHHHHHHH-----HHHHHHHHHHHHTCC-
T ss_pred CCCCcchHHHHHHHHHHCCCEEEEeccCCCCCceEEEECHHHHHHHHHHHHH-----HHHHHHHHHHHHccCC
Confidence 799999999999999999999998643 444 555999999999998753 4555666666665443
No 232
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=54.21 E-value=17 Score=32.38 Aligned_cols=44 Identities=9% Similarity=0.038 Sum_probs=39.6
Q ss_pred HHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcce
Q 025511 145 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSG 188 (251)
Q Consensus 145 ~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTG 188 (251)
...+++|..+.-+.-.|||..+||+..-+-+++++|++.|.|..
T Consensus 19 ~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i~~ 62 (406)
T 1z6r_A 19 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQE 62 (406)
T ss_dssp HHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEe
Confidence 45788999999999999999999999999999999999887643
No 233
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=53.67 E-value=39 Score=30.93 Aligned_cols=60 Identities=13% Similarity=0.210 Sum_probs=48.8
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHH
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKA 206 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~a 206 (251)
..++++..+.++...+++..+|++.+-+-.-|++|.+.|.|.-+-.-|+ -+|+.++=++-
T Consensus 301 ~ll~~l~~~p~~t~~~~~~~~~~S~~TA~r~L~~L~e~GiL~~~~~gR~-~~y~~~~~l~i 360 (373)
T 3eqx_A 301 ELVQVIFEQPYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQSGKE-KLFVHPKFVTL 360 (373)
T ss_dssp HHHHHHHHCSEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC--CCS-CEEECHHHHHH
T ss_pred HHHHHHHHCCCccHHHHHHHhCcCHHHHHHHHHHHHHCCcEEEeCCCCc-eEeehHHHHHH
Confidence 4677888999999999999999998888888999999999987655555 46888865543
No 234
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=53.50 E-value=57 Score=26.86 Aligned_cols=76 Identities=14% Similarity=0.201 Sum_probs=52.1
Q ss_pred chhHHHHHHHHHHhc--CccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHhcCCc
Q 025511 140 DRDLLADFVEYIKKH--KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRV 217 (251)
Q Consensus 140 sq~lL~~FI~YIK~~--KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~qrGRV 217 (251)
....+..+++||..+ .-..+++||..+|+++.-.-...+ . .|.=- .=||..-=|......+ ..+..
T Consensus 167 ~~~~~~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk--~-~G~t~--------~~~l~~~Rl~~A~~lL-~~~~~ 234 (276)
T 3gbg_A 167 DLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELE--S-RGVKF--------RELINSIRISYSISLM-KTGEF 234 (276)
T ss_dssp TTCHHHHHHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHH--T-TTCCH--------HHHHHHHHHHHHHHHH-HHTCC
T ss_pred hHHHHHHHHHHHHHhhcCCCCHHHHHHHHCcCHHHHHHHHH--H-cCCCH--------HHHHHHHHHHHHHHHH-hCCCC
Confidence 456789999999875 457899999999998877666553 2 33200 1134444455655555 45778
Q ss_pred cHHHHHhhcc
Q 025511 218 SISHLASKSN 227 (251)
Q Consensus 218 SisELa~~sN 227 (251)
||+++|..|.
T Consensus 235 si~eIA~~~G 244 (276)
T 3gbg_A 235 KIKQIAYQSG 244 (276)
T ss_dssp CHHHHHHHTT
T ss_pred CHHHHHHHhC
Confidence 9999998775
No 235
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=53.44 E-value=46 Score=24.76 Aligned_cols=65 Identities=12% Similarity=0.227 Sum_probs=47.1
Q ss_pred cchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHH--HHHhcCCccHHHHHhhc
Q 025511 157 IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVAD--YIKRQGRVSISHLASKS 226 (251)
Q Consensus 157 V~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~--fI~qrGRVSisELa~~s 226 (251)
..+.++|..+|+++.- |...+..|.|..+-.+.|.|-|-|++++..+.. +.+..| +|+.++....
T Consensus 3 ~~i~e~A~~~gvs~~t----LR~ye~~Gll~p~~~~~~g~R~Y~~~dl~~l~~I~~l~~~G-~~l~~I~~~l 69 (109)
T 1r8d_A 3 YQVKQVAEISGVSIRT----LHHYDNIELLNPSALTDAGYRLYSDADLERLQQILFFKEIG-FRLDEIKEML 69 (109)
T ss_dssp BCHHHHHHHHSCCHHH----HHHHHHTTSSCCSEECTTCCEEBCHHHHHHHHHHHHHHHTT-CCHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHH----HHHHHHCCCCCCCeECCCCCeeeCHHHHHHHHHHHHHHHCC-CCHHHHHHHH
Confidence 3578999999997654 445577899998875667788899999987653 334445 7877766544
No 236
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=53.28 E-value=27 Score=30.45 Aligned_cols=44 Identities=9% Similarity=0.068 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcc
Q 025511 144 LADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLS 187 (251)
Q Consensus 144 L~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LT 187 (251)
|-.-|.++....-+...|||..||++..-+-.-|+.|+++|.+.
T Consensus 9 ~~~~ia~l~~~~~~~~~ela~~l~vS~~tIrRdL~~l~~~G~v~ 52 (315)
T 2w48_A 9 LIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGREQGIVT 52 (315)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEE
Confidence 34557777788889999999999999888888899999999997
No 237
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=52.17 E-value=21 Score=29.10 Aligned_cols=53 Identities=11% Similarity=0.222 Sum_probs=39.4
Q ss_pred cCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEE-EcHHHHHHHH
Q 025511 154 HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIY-ISQAEMKAVA 208 (251)
Q Consensus 154 ~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIY-IS~EEm~aVA 208 (251)
.++ .-.+||..||++..-|-+-++.|+.+|-|.-. --+|-||- +|++++..+-
T Consensus 34 ~~L-~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~-~~~G~~V~~~~~~~~~el~ 87 (218)
T 3sxy_A 34 EKL-NVRELSEKLGISFTPVRDALLQLATEGLVKVV-PRVGFFVTDVDEKFIRETI 87 (218)
T ss_dssp CEE-CHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE-TTTEEEECCCCHHHHHHHH
T ss_pred CEe-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe-CCCceEEcCCCHHHHHHHH
Confidence 345 78999999999999999999999999998643 34565553 3555554443
No 238
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=51.38 E-value=5.6 Score=32.00 Aligned_cols=44 Identities=16% Similarity=0.296 Sum_probs=38.6
Q ss_pred EcHHHHHHHHHHHHhcCCccHHHHHhhcccccccccccchhhhh
Q 025511 199 ISQAEMKAVADYIKRQGRVSISHLASKSNQFIDLETKAQFVEDL 242 (251)
Q Consensus 199 IS~EEm~aVA~fI~qrGRVSisELa~~sN~lI~L~p~~~~~~~~ 242 (251)
+|++|+.+||..+...|.|+-.|+....+++.+=.|..+|.+..
T Consensus 41 Ltdeev~~Va~~L~~~~~i~~~dI~~~I~~vt~~~Ps~eDI~RV 84 (112)
T 2lky_A 41 LTNDEIKAIAEDLEKRAHFDHIDIGVLITQMTDEMPREEDIERV 84 (112)
T ss_dssp CCHHHHHHHHHHHHHHCCCSCCCSHHHHHHHTTCCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccCCCHHHHHHH
Confidence 78999999999999999988889999999999989988887543
No 239
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=51.19 E-value=6.8 Score=30.76 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=31.6
Q ss_pred cchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEc
Q 025511 157 IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYIS 200 (251)
Q Consensus 157 V~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS 200 (251)
+...+||...|++.+-+-.-+++|.++|-|.- ++|+ |.|.
T Consensus 179 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~---~~~~-i~i~ 218 (227)
T 3dkw_A 179 VAKQLVAGHLSIQPETFSRIMHRLGDEGIIHL---DGRE-ISIL 218 (227)
T ss_dssp SCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEE---SSSC-EEES
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCcEEe---cCCE-EEEe
Confidence 56799999999988888888999999988752 4555 4443
No 240
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=51.05 E-value=60 Score=27.48 Aligned_cols=86 Identities=14% Similarity=0.201 Sum_probs=61.8
Q ss_pred HHHHHHH-hcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHhcCCcc-----H
Q 025511 146 DFVEYIK-KHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVS-----I 219 (251)
Q Consensus 146 ~FI~YIK-~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~qrGRVS-----i 219 (251)
+.++++. ...-+.+.|||..+|++..-+-.-++.|++.|-|.- |.+| ..++++.=+.--..+.....-+. +
T Consensus 27 ~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~~G~v~~--~~~~-~Y~lg~~~~~lg~~~~~~~~l~~~a~p~l 103 (260)
T 2o0y_A 27 DLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCARSVLTS--RADG-SYSLGPEMLRWVRLAGRTWAPPEEVVDIM 103 (260)
T ss_dssp HHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEE--CTTS-CEEECHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE--CCCC-eEEecHHHHHHHHHHHccCCHHHHHHHHH
Confidence 3455664 356789999999999999999999999999999976 5667 44688875554444554443332 4
Q ss_pred HHHHhhccccccccc
Q 025511 220 SHLASKSNQFIDLET 234 (251)
Q Consensus 220 sELa~~sN~lI~L~p 234 (251)
.+|+..+|.-..|.-
T Consensus 104 ~~L~~~~~etv~L~v 118 (260)
T 2o0y_A 104 RQLSADTGETVNLYI 118 (260)
T ss_dssp HHHHHHHTSEEEEEE
T ss_pred HHHHHhHCCcEEEEE
Confidence 678888777666654
No 241
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=50.87 E-value=38 Score=25.69 Aligned_cols=49 Identities=16% Similarity=0.233 Sum_probs=40.7
Q ss_pred HcCCChHHHHHHHHHHHhcCCcceeeeCC---C---ceEEEcHHHHHHHHHHHHh
Q 025511 165 EFKLRTQECINRITSLENMGRLSGVMDDR---G---KYIYISQAEMKAVADYIKR 213 (251)
Q Consensus 165 ~FgLrTqdvI~RIq~Lea~G~LTGViDDR---G---KFIYIS~EEm~aVA~fI~q 213 (251)
.++++..-+-.-++.|+++|-|+...++. | ||..||+.--+.+..++..
T Consensus 51 ~~~is~gtLY~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~~ 105 (115)
T 2dql_A 51 TYRLSDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSPEWQHQAEDLARL 105 (115)
T ss_dssp TEECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECGGGHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHHCCCEEEEeeecCCCCCCcEEEEECHHHHHHHHHHHHH
Confidence 45799999999999999999999987542 3 7889999988888887654
No 242
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=50.83 E-value=22 Score=28.36 Aligned_cols=56 Identities=23% Similarity=0.383 Sum_probs=41.5
Q ss_pred HHHhcCccchHhHHhHcCC------ChHH-HHHHHHHHHhcCCc---ceeeeC--CC---------------ceEEEcHH
Q 025511 150 YIKKHKCIPLEDLAAEFKL------RTQE-CINRITSLENMGRL---SGVMDD--RG---------------KYIYISQA 202 (251)
Q Consensus 150 YIK~~KVV~LEDLAa~FgL------rTqd-vI~RIq~Lea~G~L---TGViDD--RG---------------KFIYIS~E 202 (251)
-++..++.-|.+||..+|+ +.++ +...++.+.++|.+ +||+|- +| .=||||+.
T Consensus 5 eLk~~~~~eL~eiAk~LgI~~~s~mrKqeLI~~IL~~~~~~~~~~~~~Gvlei~~dG~GFlr~~~~~y~~~~~DiyVs~~ 84 (130)
T 1a62_A 5 ELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPS 84 (130)
T ss_dssp HHHTSCHHHHHHHHHTTTCCCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEEEECTTSCEEEECGGGTTCCCTTCEEECHH
T ss_pred HHhhCCHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhcCCeEEEEEEEEEcCCCeEEEecCCcCCCCCCCCEEECHH
Confidence 3588899999999999997 5677 55567888888854 899882 33 23777777
Q ss_pred HHH
Q 025511 203 EMK 205 (251)
Q Consensus 203 Em~ 205 (251)
.+.
T Consensus 85 ~ir 87 (130)
T 1a62_A 85 QIR 87 (130)
T ss_dssp HHH
T ss_pred HHh
Confidence 665
No 243
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=49.76 E-value=83 Score=23.90 Aligned_cols=71 Identities=11% Similarity=0.089 Sum_probs=50.2
Q ss_pred CccchHhHHhHc------CCChHHHHHHHHHHHhcCCcceeeeC----CC-ceEEEcHHHHHHHHHHHHhcCCccHHHHH
Q 025511 155 KCIPLEDLAAEF------KLRTQECINRITSLENMGRLSGVMDD----RG-KYIYISQAEMKAVADYIKRQGRVSISHLA 223 (251)
Q Consensus 155 KVV~LEDLAa~F------gLrTqdvI~RIq~Lea~G~LTGViDD----RG-KFIYIS~EEm~aVA~fI~qrGRVSisELa 223 (251)
+=..--+|+..+ +++..-+-.-++.|+++|-|+...+. +. ||..||+.--..+..+...- ..+.
T Consensus 23 ~p~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~~~~~-----~~~~ 97 (117)
T 4esf_A 23 RETYGYEITRHLNDLGFTEVVEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEAGRQELELFWKKW-----DFVS 97 (117)
T ss_dssp SCBCHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHHHHHHHHHHHHHH-----HHHH
T ss_pred CCCCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHHHHHHHHHHHHHH-----HHHH
Confidence 334444555554 89999999999999999999998752 33 45559999999998887653 3444
Q ss_pred hhccccc
Q 025511 224 SKSNQFI 230 (251)
Q Consensus 224 ~~sN~lI 230 (251)
+..+.++
T Consensus 98 ~~i~~il 104 (117)
T 4esf_A 98 SKINVLK 104 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 244
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=49.76 E-value=18 Score=32.17 Aligned_cols=41 Identities=15% Similarity=0.113 Sum_probs=37.0
Q ss_pred HHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcce
Q 025511 147 FVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSG 188 (251)
Q Consensus 147 FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTG 188 (251)
.+++|. +.-+.-.|||...||+..-|-+++++|++.|.|..
T Consensus 25 il~~l~-~~~~sr~~la~~~gls~~tv~~~v~~L~~~gli~~ 65 (380)
T 2hoe_A 25 ILKRIM-KSPVSRVELAEELGLTKTTVGEIAKIFLEKGIVVE 65 (380)
T ss_dssp SHHHHH-HSCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 567888 88899999999999999999999999999988743
No 245
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=49.70 E-value=50 Score=26.48 Aligned_cols=68 Identities=12% Similarity=0.220 Sum_probs=50.6
Q ss_pred cCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHH--HHHHhcCCccHHHHHhhcc
Q 025511 154 HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVA--DYIKRQGRVSISHLASKSN 227 (251)
Q Consensus 154 ~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA--~fI~qrGRVSisELa~~sN 227 (251)
.+...+.++|..+|+++. .|.--+..|.|...-+ .|.|=|.|++++..+. .+.+..| +|+.++...-+
T Consensus 9 ~~~~~i~e~A~~~gvs~~----TLR~ye~~Gll~p~r~-~~g~R~Y~~~dl~~l~~I~~lr~~G-~sl~eI~~~l~ 78 (154)
T 2zhg_A 9 KALLTPGEVAKRSGVAVS----ALHFYESKGLITSIRN-SGNQRRYKRDVLRYVAIIKIAQRIG-IPLATIGEAFG 78 (154)
T ss_dssp -CCBCHHHHHHHHTSCHH----HHHHHHHTTSSCCEEC-TTSCEEBCTTHHHHHHHHHHHHHHT-CCHHHHHHHHC
T ss_pred ccCCCHHHHHHHHCcCHH----HHHHHHHcCCCCcccC-CCCCEEeCHHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence 356789999999999764 4566788899987654 4667778999988765 4455667 88888776544
No 246
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=49.54 E-value=33 Score=28.76 Aligned_cols=88 Identities=16% Similarity=0.179 Sum_probs=60.4
Q ss_pred HHHHHHHhcC-ccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHH----HHhcCCccHH
Q 025511 146 DFVEYIKKHK-CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADY----IKRQGRVSIS 220 (251)
Q Consensus 146 ~FI~YIK~~K-VV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~f----I~qrGRVSis 220 (251)
..++++..+. -+.+.|||..+|++..-+-..++.|++.|-|.-. .+.|+| .+++.=+. ++.- +.+..+-.+.
T Consensus 10 ~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~~~-~~~~~Y-~lg~~~~~-lg~~~~~~l~~~a~p~l~ 86 (241)
T 2xrn_A 10 SIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEAL-GPAGGF-RLGPALGQ-LINQAQTDILSLVKPYLR 86 (241)
T ss_dssp HHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEEEC-GGGCEE-EECSHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe-CCCCeE-EECHHHHH-HHhhcccCHHHHHHHHHH
Confidence 3556666553 6899999999999999999999999999999873 223555 77765332 2222 2222333456
Q ss_pred HHHhhccccccccccc
Q 025511 221 HLASKSNQFIDLETKA 236 (251)
Q Consensus 221 ELa~~sN~lI~L~p~~ 236 (251)
+|+..+|.-+.|.--.
T Consensus 87 ~L~~~tgetv~L~v~~ 102 (241)
T 2xrn_A 87 SLAEELDESVSLASLA 102 (241)
T ss_dssp HHHHHHTSEEEEEEEE
T ss_pred HHHHHHCCeEEEEEEE
Confidence 8888888877776543
No 247
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=48.32 E-value=21 Score=27.46 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=30.9
Q ss_pred cchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEc
Q 025511 157 IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYIS 200 (251)
Q Consensus 157 V~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS 200 (251)
+...+||...|++.+-+-.-+++|.++|.|. -.|+.|.|.
T Consensus 165 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~i~i~ 204 (207)
T 2oz6_A 165 ITRQEIGRIVGCSREMVGRVLKSLEEQGLVH----VKGKTMVVF 204 (207)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE----EETTEEEEE
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----ecCCEEEEE
Confidence 5789999999998887777889999998764 234456553
No 248
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=48.11 E-value=51 Score=24.97 Aligned_cols=73 Identities=11% Similarity=0.247 Sum_probs=51.8
Q ss_pred cchHhHHhHc------CCChHHHHHHHHHHHhcCCcceeee--CCC---ceEEEcHHHHHHHHHHHHhcCCccHHHHHhh
Q 025511 157 IPLEDLAAEF------KLRTQECINRITSLENMGRLSGVMD--DRG---KYIYISQAEMKAVADYIKRQGRVSISHLASK 225 (251)
Q Consensus 157 V~LEDLAa~F------gLrTqdvI~RIq~Lea~G~LTGViD--DRG---KFIYIS~EEm~aVA~fI~qrGRVSisELa~~ 225 (251)
..--+|+..+ +++..-+-.-++.|++.|-|+...+ +.| ||..||+.-...+..++.. ...+...
T Consensus 23 ~~Gyei~~~l~~~~~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~~~~-----~~~~~~~ 97 (115)
T 4esb_A 23 VYGYELSTKLNKHGFTFVSEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLEQLEEFKQS-----WGMVSTT 97 (115)
T ss_dssp EEHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHHHHHHHHH-----HHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCCcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHHHHHHHHHH-----HHHHHHH
Confidence 3444455444 5899999999999999999999875 222 4555999999999988764 4456666
Q ss_pred ccccccccc
Q 025511 226 SNQFIDLET 234 (251)
Q Consensus 226 sN~lI~L~p 234 (251)
-|+++.=.+
T Consensus 98 i~~il~~~~ 106 (115)
T 4esb_A 98 VNNLLQGES 106 (115)
T ss_dssp HHHHTTCC-
T ss_pred HHHHHCCCC
Confidence 666664433
No 249
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=47.86 E-value=2.1e+02 Score=28.00 Aligned_cols=38 Identities=21% Similarity=0.389 Sum_probs=30.1
Q ss_pred CccchhhhhhhHhhhHhhhhhcccccccccccchhHHH
Q 025511 2 GIFSNRVILKTYIFDIHRVLEGYESSTRKDTRANSLLL 39 (251)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (251)
|.|+..--...|+-++..+..-|....+|...++..|-
T Consensus 425 g~~~~p~g~~~~~~~~~~~~~~Y~~~~~kg~~~~~vl~ 462 (592)
T 1f5n_A 425 GIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQ 462 (592)
T ss_dssp TTTSSTTHHHHHHHHHHHHHHHHHHSSCCCTTHHHHHH
T ss_pred CCcCCCCcHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 66665555667888899999999999999998876553
No 250
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=47.62 E-value=32 Score=27.01 Aligned_cols=44 Identities=27% Similarity=0.408 Sum_probs=37.7
Q ss_pred CccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEE
Q 025511 155 KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIY 198 (251)
Q Consensus 155 KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIY 198 (251)
+.+.+.+||..+|++..-+-.-++.|...|-|..+-...|-|.-
T Consensus 27 ~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~L 70 (143)
T 3t8r_A 27 GCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQL 70 (143)
T ss_dssp CCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECSSSSSEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEecCCCCCCeee
Confidence 58999999999999999999999999999998877555555653
No 251
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=46.48 E-value=4.2 Score=36.27 Aligned_cols=54 Identities=9% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcc-eeeeCCCceEEEcHHH
Q 025511 145 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLS-GVMDDRGKYIYISQAE 203 (251)
Q Consensus 145 ~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LT-GViDDRGKFIYIS~EE 203 (251)
...+.+|..+.-+...|||..||++..-+-.-|+.|++.|.|. -+ .| ||+|++-
T Consensus 23 ~~iL~~l~~~~~~t~~eLa~~l~vs~~Tv~r~l~~Le~~Glv~~~~---~g--i~LT~~G 77 (345)
T 2o0m_A 23 FQILRNIYWMQPIGRRSLSETMGITERVLRTETDVLKQLNLIEPSK---SG--MTLTERG 77 (345)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe---cc--eEEcHHH
Confidence 3466777778889999999999999998888999999999885 22 23 7777554
No 252
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=45.84 E-value=28 Score=29.13 Aligned_cols=48 Identities=17% Similarity=0.332 Sum_probs=41.0
Q ss_pred cCccchHhHHhHcCC------ChHHHHHHHHHHHhcCCcceeeeCCCceEEEcH
Q 025511 154 HKCIPLEDLAAEFKL------RTQECINRITSLENMGRLSGVMDDRGKYIYISQ 201 (251)
Q Consensus 154 ~KVV~LEDLAa~FgL------rTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~ 201 (251)
..-+++.+++..+++ +.+|+-.-+..|..+|.|-|-||-..+.+-+|.
T Consensus 139 ~~rI~l~~i~~~l~~~~~~~~~~~evE~ila~lI~~G~Ikg~I~~~~~~lVlsk 192 (203)
T 3t5x_A 139 THQLSLDAFLVALKFMQVEDVDIDEVQCILANLIYMGHVKGYISHQHQKLVVSK 192 (203)
T ss_dssp CSEEEHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECS
T ss_pred CCcccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCceEEEEcccccEEEECC
Confidence 567899999999864 788899999999999999999998777776664
No 253
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=45.52 E-value=46 Score=28.66 Aligned_cols=58 Identities=3% Similarity=0.093 Sum_probs=45.6
Q ss_pred cCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHhcC
Q 025511 154 HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQG 215 (251)
Q Consensus 154 ~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~qrG 215 (251)
++-|---+||..+|++...|-+-++.|.+.|-|+ .+. ++|++|++-.+-..+.++...
T Consensus 28 ~~~V~~~~LA~~LgvS~~SV~~~lkkL~e~GLV~--~~~--~Gv~LTe~G~~~A~~i~~rhr 85 (200)
T 2p8t_A 28 KEPLGRKQISERLELGEGSVRTLLRKLSHLDIIR--SKQ--RGHFLTLKGKEIRDKLLSMFS 85 (200)
T ss_dssp TSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE--EC----CEEECHHHHHHHHHHHTTBC
T ss_pred cCCccHHHHHHHhCCCHHHHHHHHHHHHHCCCEE--EeC--CCeEECHHHHHHHHHHHHHHH
Confidence 3558889999999999999999999999999884 233 699999988775555554443
No 254
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=45.26 E-value=17 Score=28.02 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=31.9
Q ss_pred cchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEc
Q 025511 157 IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYIS 200 (251)
Q Consensus 157 V~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS 200 (251)
+...+||...|++.+-+-.-+++|.++|.|. -.|+-|.|.
T Consensus 168 ~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~ 207 (210)
T 3ryp_A 168 ITRQEIGQIVGCSRETVGRILKMLEDQNLIS----AHGKTIVVY 207 (210)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEEE
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE----eCCCEEEEE
Confidence 5689999999998888888899999998775 344556654
No 255
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=45.22 E-value=25 Score=27.49 Aligned_cols=44 Identities=9% Similarity=-0.047 Sum_probs=36.3
Q ss_pred cCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEE
Q 025511 154 HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIY 198 (251)
Q Consensus 154 ~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIY 198 (251)
.+.+.+.+||..+|++..-+-.-++.|...|-|..+-. .|-|.-
T Consensus 28 ~~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG-~GGy~L 71 (149)
T 1ylf_A 28 SSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG-PGGAGL 71 (149)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC----CCEEE
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccC-CCceEe
Confidence 46789999999999999999999999999999987766 666654
No 256
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=44.51 E-value=66 Score=24.12 Aligned_cols=52 Identities=15% Similarity=0.166 Sum_probs=40.0
Q ss_pred HHHHHHhcCccchHhHHhHcCC----ChHHHHHHHHHHHhcCCcceeeeCCCceEEE
Q 025511 147 FVEYIKKHKCIPLEDLAAEFKL----RTQECINRITSLENMGRLSGVMDDRGKYIYI 199 (251)
Q Consensus 147 FI~YIK~~KVV~LEDLAa~FgL----rTqdvI~RIq~Lea~G~LTGViDDRGKFIYI 199 (251)
.+.+|-.+.=+...|||..++. +..-+-.-|..|++.|-|.=.-|.| .|+|-
T Consensus 40 VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~~gR-~~~Y~ 95 (99)
T 2k4b_A 40 VMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEKEGR-KFVYR 95 (99)
T ss_dssp HHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEEETT-EEEEE
T ss_pred HHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEeCCC-EEEEE
Confidence 4555655667899999999974 5677888899999999998876544 67774
No 257
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=43.81 E-value=26 Score=27.42 Aligned_cols=31 Identities=16% Similarity=0.146 Sum_probs=27.4
Q ss_pred cchHhHHhHcCCChHHHHHHHHHHHhcCCcc
Q 025511 157 IPLEDLAAEFKLRTQECINRITSLENMGRLS 187 (251)
Q Consensus 157 V~LEDLAa~FgLrTqdvI~RIq~Lea~G~LT 187 (251)
+..++||...|++.+-+-.-+++|.++|.|.
T Consensus 188 lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 218 (230)
T 3iwz_A 188 VSRQELARLVGCSREMAGRVLKKLQADGLLH 218 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE
Confidence 5689999999998888888899999998775
No 258
>2k5j_A Uncharacterized protein YIIF; structure, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri 5 str}
Probab=43.43 E-value=25 Score=25.62 Aligned_cols=31 Identities=13% Similarity=0.202 Sum_probs=27.7
Q ss_pred ceEEEcHHHHHHHHHHHHhcCCccHHHHHhhc
Q 025511 195 KYIYISQAEMKAVADYIKRQGRVSISHLASKS 226 (251)
Q Consensus 195 KFIYIS~EEm~aVA~fI~qrGRVSisELa~~s 226 (251)
--|+++++.+..+....+++| +|.++|++.+
T Consensus 12 isI~Lpdel~~~Ld~la~~~g-~srselireA 42 (80)
T 2k5j_A 12 ILLDLSNEVIKQLDDLEVQRN-LPRADLLREA 42 (80)
T ss_dssp EEEEECHHHHHHHHHHHHHHT-CCHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHHhC-CCHHHHHHHH
Confidence 568999999999999999999 6999998853
No 259
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=43.35 E-value=13 Score=25.55 Aligned_cols=25 Identities=12% Similarity=0.268 Sum_probs=18.6
Q ss_pred eeeeCCCceEEEcHHHHHHHHHHHHhc
Q 025511 188 GVMDDRGKYIYISQAEMKAVADYIKRQ 214 (251)
Q Consensus 188 GViDDRGKFIYIS~EEm~aVA~fI~qr 214 (251)
|.|-.-|. -+|++|+.+|+.||...
T Consensus 53 ~~Mp~~~~--~Lsd~ei~~l~~yi~~~ 77 (78)
T 1gks_A 53 GAMPAYDG--RADREDLVKAIEYMLST 77 (78)
T ss_dssp TTBCCCBT--TBCHHHHHHHHHHHHTT
T ss_pred CCCCCCCC--CCCHHHHHHHHHHHHhh
Confidence 45655433 27999999999999863
No 260
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=42.40 E-value=54 Score=29.95 Aligned_cols=59 Identities=15% Similarity=0.318 Sum_probs=41.2
Q ss_pred cCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCce-EEEcHHHHHHHHHHHHhcCCccH
Q 025511 154 HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKY-IYISQAEMKAVADYIKRQGRVSI 219 (251)
Q Consensus 154 ~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKF-IYIS~EEm~aVA~fI~qrGRVSi 219 (251)
..-+.++|||..-|++++|+|.-++. .|.|.= -+|.+ |.+|++-++...+. .+++++.+
T Consensus 206 ~~~isi~~is~~Tgi~~~Dii~tL~~---l~~l~~---~kg~~~i~~~~~~~~~~~k~-~~k~~~~i 265 (276)
T 3to7_A 206 QKEITIDEISSMTSMTTTDILHTAKT---LNILRY---YKGQHIIFLNEDILDRYNRL-KAKKRRTI 265 (276)
T ss_dssp CSEEEHHHHHHHHCBCHHHHHHHHHH---TTCEEE---ETTEEEEECCHHHHHHHHHH-HHTCCCCC
T ss_pred CCceeHHHHHHHhCCCHHHHHHHHHH---CCCEEE---eCCcEEEEECHHHHHHHHHH-hcCCCcEE
Confidence 45789999999999999999876555 455531 35666 78888777665554 34455544
No 261
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=42.34 E-value=26 Score=29.60 Aligned_cols=85 Identities=15% Similarity=0.251 Sum_probs=57.5
Q ss_pred HHHHHHHh-cCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHH-----HHhcCCccH
Q 025511 146 DFVEYIKK-HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADY-----IKRQGRVSI 219 (251)
Q Consensus 146 ~FI~YIK~-~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~f-----I~qrGRVSi 219 (251)
+.++++.. ..-+.+.|||..+|++..-+-.-++.|++.|-|.- |+ |+| .+++.=+.--..+ +.+..+-.+
T Consensus 18 ~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~~G~v~~--~~-~~Y-~Lg~~~~~l~~~~~~~~~l~~~a~p~l 93 (257)
T 2g7u_A 18 AVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAG--SG-GRW-SLTPRVLSIGQHYSESHALIEAAMPRL 93 (257)
T ss_dssp HHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ET-TEE-EECGGGHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe--CC-CEE-EEcHHHHHHHHHhhccCcHHHHHHHHH
Confidence 34555543 45688999999999999999999999999999986 43 665 6777633221111 222333345
Q ss_pred HHHHhhccccccccc
Q 025511 220 SHLASKSNQFIDLET 234 (251)
Q Consensus 220 sELa~~sN~lI~L~p 234 (251)
.+|+..++.-..|.-
T Consensus 94 ~~L~~~~~etv~L~v 108 (257)
T 2g7u_A 94 LEVAEKTQESASLGV 108 (257)
T ss_dssp HHHHHHHSSCEEEEE
T ss_pred HHHHHHHCCEEEEEE
Confidence 677777777666654
No 262
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=42.28 E-value=66 Score=28.81 Aligned_cols=84 Identities=13% Similarity=0.126 Sum_probs=43.2
Q ss_pred HHHHHhhhccceeccCCccchhcccCchhHHHHHHHHHHhcCccchHhHHhHcC--CChHHHHHHHHHHHhcCCcceeee
Q 025511 114 AFEFEKWKGEFSIDAEGTTENEVQDGDRDLLADFVEYIKKHKCIPLEDLAAEFK--LRTQECINRITSLENMGRLSGVMD 191 (251)
Q Consensus 114 ~EEY~KwK~~f~VEeeG~~~~e~ee~sq~lL~~FI~YIK~~KVV~LEDLAa~Fg--LrTqdvI~RIq~Lea~G~LTGViD 191 (251)
.+.+..++..+-....... .-+--..|..-|.|||..|-..-.--...++ .-+++-...+ -|++.+.+.=|+|
T Consensus 29 n~~~~~L~~l~p~~~~~~~----k~dk~~il~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ll~~~~gfi~v~~ 103 (387)
T 4f3l_B 29 NSFIDELASLVPTCNAMSR----KLDKLTVLRMAVQHMKTLRGATNPYTEANYKPTFLSDDELKHL-ILRAADGFLFVVG 103 (387)
T ss_dssp HHHHHHHHHHCHHHHHCSS----CCCHHHHHHHHHHHHHHHHCC------CCSSCTTSCHHHHHHH-HHHTCCSEEEEEE
T ss_pred HHHHHHHHHhcCCCCcccc----ccCHHHHHHHHHHHHHHhhcccccccccccCcccCCHHHHHHH-HHhcCCCEEEEEe
Confidence 4566667776654322211 1223566899999999755211000000010 1122222222 3556666666778
Q ss_pred C-CCceEEEcHH
Q 025511 192 D-RGKYIYISQA 202 (251)
Q Consensus 192 D-RGKFIYIS~E 202 (251)
. .|+++|+|+.
T Consensus 104 ~~~G~i~yvs~~ 115 (387)
T 4f3l_B 104 CDRGKILFVSES 115 (387)
T ss_dssp TTTCBEEEECTT
T ss_pred cCCeEEEEEchh
Confidence 4 5999999964
No 263
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=42.05 E-value=31 Score=24.52 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=30.7
Q ss_pred CCCceEEEcHHHHHHHHHHHHhcCC-ccHHHHHhhc
Q 025511 192 DRGKYIYISQAEMKAVADYIKRQGR-VSISHLASKS 226 (251)
Q Consensus 192 DRGKFIYIS~EEm~aVA~fI~qrGR-VSisELa~~s 226 (251)
-.|+-|-+|+.|+.-++-++...|+ ||..+|....
T Consensus 16 ~~~~~i~Lt~~E~~lL~~L~~~~g~~vsr~~L~~~v 51 (96)
T 3rjp_A 16 RGDDEISLTKREYDLLNILMTNMNRVMTREELLSNV 51 (96)
T ss_dssp ETTEEEECCHHHHHHHHHHHHTTTSCBCHHHHHHHH
T ss_pred ECCEEEEcCHHHHHHHHHHHhCCCeeEcHHHHHHHH
Confidence 3688899999999999999999998 6788888764
No 264
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=41.96 E-value=40 Score=26.00 Aligned_cols=81 Identities=7% Similarity=0.119 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeC---CCc-eEEEcHHHHHHHHHHHHhcCC
Q 025511 141 RDLLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDD---RGK-YIYISQAEMKAVADYIKRQGR 216 (251)
Q Consensus 141 q~lL~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDD---RGK-FIYIS~EEm~aVA~fI~qrGR 216 (251)
.+.-...+.+.... ....++|..||++..-|-.-++.....|. ..+ .|. ---+|++....|..++.....
T Consensus 28 ~e~r~~ii~l~~~G--~s~~~IA~~lgis~~TV~rwl~r~~~~G~----~~~~~r~gr~~~~~~~~~~~~I~~~~~~~~~ 101 (159)
T 2k27_A 28 EVVRQRIVDLAHQG--VRPCDISRQLRVSHGCVSKILGRYYETGS----IRPGVIGGSKPKVATPKVVEKIGDYKRQNPT 101 (159)
T ss_dssp HHHHHHHHHHHHHT--CCHHHHHHHHTCCSHHHHHHHCCSSTTSC----CCCCCCCCCCCCCCCTTHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHCcCHHHHHHHHHHHHhcCC----ccCCCCCCCCCCCCCHHHHHHHHHHHHHCcc
Confidence 34445566666544 57789999999987766665655555553 333 232 344688899999999998889
Q ss_pred ccHHHHHhhcc
Q 025511 217 VSISHLASKSN 227 (251)
Q Consensus 217 VSisELa~~sN 227 (251)
.|..+|+....
T Consensus 102 ~s~~~i~~~l~ 112 (159)
T 2k27_A 102 MFAWEIRDRLL 112 (159)
T ss_dssp SCHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 99988887764
No 265
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=41.96 E-value=62 Score=24.65 Aligned_cols=57 Identities=12% Similarity=0.070 Sum_probs=41.5
Q ss_pred cchHhHHhHcC------CChHHHHHHHHHHHhcCCcceeee--C--CCc-eEEEcHHHHHHHHHHHHh
Q 025511 157 IPLEDLAAEFK------LRTQECINRITSLENMGRLSGVMD--D--RGK-YIYISQAEMKAVADYIKR 213 (251)
Q Consensus 157 V~LEDLAa~Fg------LrTqdvI~RIq~Lea~G~LTGViD--D--RGK-FIYIS~EEm~aVA~fI~q 213 (251)
..--+|+..++ ++..-+-.-++.|++.|-|+...+ + +.+ +..||+.-...+..++..
T Consensus 28 ~~gyel~~~l~~~~~~~i~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT~~G~~~l~~~~~~ 95 (117)
T 3elk_A 28 MHGYELQKSMFETTGQALPQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHITDAGKKFLCDHSQA 95 (117)
T ss_dssp EEHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECHHHHHHHHHTSTT
T ss_pred CCHHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHHHHHHH
Confidence 34444555543 788888889999999999998875 2 334 545999998888877654
No 266
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=39.56 E-value=1.1e+02 Score=24.11 Aligned_cols=68 Identities=9% Similarity=0.117 Sum_probs=49.4
Q ss_pred CccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHH--HHhcCCccHHHHHhhcc
Q 025511 155 KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADY--IKRQGRVSISHLASKSN 227 (251)
Q Consensus 155 KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~f--I~qrGRVSisELa~~sN 227 (251)
+...+.++|..+|+++.- |.--+..|.|..+--+.|.|=|-|++.+..+..- .+..| +|+.++....+
T Consensus 3 ~~~tI~evA~~~Gvs~~t----LR~ye~~GLl~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G-~sl~~I~~~l~ 72 (146)
T 3hh0_A 3 LAWLISEFASVGDVTVRA----LRYYDKINLLKPSDYTEGGHRLYTKDDLYVLQQIQSFKHLG-FSLGEIQNIIL 72 (146)
T ss_dssp CCBCHHHHHHHHTCCHHH----HHHHHHTTSSCCSEECTTSCEEBCHHHHHHHHHHHHHHHTT-CCHHHHHHHHT
T ss_pred CCCcHHHHHHHHCcCHHH----HHHHHHCCCCCCCeECCCCCEeeCHHHHHHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 456789999999997653 5667888999988555566777799999877543 33334 78877766544
No 267
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=38.92 E-value=29 Score=27.65 Aligned_cols=40 Identities=20% Similarity=0.332 Sum_probs=31.4
Q ss_pred cchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEc
Q 025511 157 IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYIS 200 (251)
Q Consensus 157 V~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS 200 (251)
+...+||...|++.+-+-.-++.|.++|.|. + ++| -|.|.
T Consensus 187 ~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~--~-~~~-~i~I~ 226 (232)
T 1zyb_A 187 VKMDDLARCLDDTRLNISKTLNELQDNGLIE--L-HRK-EILIP 226 (232)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSCE--E-ETT-EEEES
T ss_pred CCHHHHHHHhCCChhHHHHHHHHHHHCCCEE--e-cCC-EEEEe
Confidence 5689999999998888888899999999875 2 244 45554
No 268
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=38.58 E-value=1.3e+02 Score=25.66 Aligned_cols=78 Identities=18% Similarity=0.259 Sum_probs=54.3
Q ss_pred HHHHHHhcCc-cchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHh------------
Q 025511 147 FVEYIKKHKC-IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKR------------ 213 (251)
Q Consensus 147 FI~YIK~~KV-V~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~q------------ 213 (251)
...|+..+.. +...+|+..+|+....+-.-+..|.+.|.+.=+ ++.|.-.|++++-++++..-|..
T Consensus 7 l~~~L~~~~~~~~~~~l~~~~~l~~~~l~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~H~~~P~~ 85 (258)
T 1lva_A 7 LAQIIQEHREGLDWQEAATRASLSLEETRKLLQSMAAAGQVTLL-RVENDLYAISTERYQAWWQAVTRALEEFHSRYPLR 85 (258)
T ss_dssp HHHHHHTCTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-EETTEEEEEEHHHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHHHHhCCCEEEe-ccCCccEEEcHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 3445666654 334999999999999999999999999997655 33222238999988765554432
Q ss_pred cCCccHHHHHhhc
Q 025511 214 QGRVSISHLASKS 226 (251)
Q Consensus 214 rGRVSisELa~~s 226 (251)
.| ++..+|.+..
T Consensus 86 ~G-~~~~~L~~~~ 97 (258)
T 1lva_A 86 PG-LAREELRSRY 97 (258)
T ss_dssp SC-EEHHHHHHHH
T ss_pred cC-CCHHHHHHhc
Confidence 23 7777776653
No 269
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=37.79 E-value=58 Score=28.07 Aligned_cols=54 Identities=15% Similarity=0.260 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhc------CccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceE
Q 025511 143 LLADFVEYIKKH------KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYI 197 (251)
Q Consensus 143 lL~~FI~YIK~~------KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFI 197 (251)
.-..+.+.|... ++-.-.+||.+||++..-|.+-|+.|.++|.|..+ --+|.||
T Consensus 34 i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~-~g~G~~V 93 (272)
T 3eet_A 34 VAGDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEARKVLMAEGLVEGR-SGSGTYV 93 (272)
T ss_dssp HHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-CC--EEE
T ss_pred HHHHHHHHHHcCCCCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe-cCceEEE
Confidence 344555566553 44468899999999999999999999999987542 2344444
No 270
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=37.71 E-value=18 Score=30.71 Aligned_cols=31 Identities=13% Similarity=0.244 Sum_probs=14.2
Q ss_pred HHHHHHHH-HhhhhhhhhHHhHHhhhhhHHHH
Q 025511 37 LLLILVCL-CTSFLFLLSFSLLFDMFDLKADE 67 (251)
Q Consensus 37 ~~~~~~~~-~~~~~~~~~~~~~~~~~~Reaee 67 (251)
+..+.+|+ |+.+++|+--+.+.+-+....++
T Consensus 214 ~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~~ 245 (285)
T 3rvy_A 214 VFFIPFIFVVTFVMINLVVAICVDAMAILNQK 245 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444 44555666666677777655433
No 271
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=37.66 E-value=1e+02 Score=23.39 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=43.9
Q ss_pred cchHhHHhHc------CCChHHHHHHHHHHHhcCCcceeeeC--CC---ceEEEcHHHHHHHHHHHHh
Q 025511 157 IPLEDLAAEF------KLRTQECINRITSLENMGRLSGVMDD--RG---KYIYISQAEMKAVADYIKR 213 (251)
Q Consensus 157 V~LEDLAa~F------gLrTqdvI~RIq~Lea~G~LTGViDD--RG---KFIYIS~EEm~aVA~fI~q 213 (251)
..=-+|+..+ +++..-+-.-++.|+++|-|+...++ .| ||-.||+.-.+.+..+...
T Consensus 27 ~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~~G~~~l~~~~~~ 94 (116)
T 3hhh_A 27 TYGYEITKILNDQGFTEIVEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTSSGEAELADFWQR 94 (116)
T ss_dssp BCHHHHHHHHHTTSCSSCCHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHHHHHHH
Confidence 4444566665 78999999999999999999998742 22 5666999999998888765
No 272
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=37.60 E-value=1.2e+02 Score=23.12 Aligned_cols=52 Identities=13% Similarity=0.316 Sum_probs=43.5
Q ss_pred HHHHHHh-cCccchHhHHhHc-----CCChHHHHHHHHHHHhcCCcceeeeCCCceEE
Q 025511 147 FVEYIKK-HKCIPLEDLAAEF-----KLRTQECINRITSLENMGRLSGVMDDRGKYIY 198 (251)
Q Consensus 147 FI~YIK~-~KVV~LEDLAa~F-----gLrTqdvI~RIq~Lea~G~LTGViDDRGKFIY 198 (251)
.++++.. ..-+..+||...+ +++..-|-+-++.|.+.|.|.-+-.+.|..-|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~~~~~~~y 73 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHTDTGESVY 73 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEECTTSCEEE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEeCCCceEE
Confidence 3444543 4578899999888 89999999999999999999999888888777
No 273
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=37.52 E-value=36 Score=27.87 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=31.7
Q ss_pred cchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEc
Q 025511 157 IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYIS 200 (251)
Q Consensus 157 V~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS 200 (251)
+...+||...|++.+-+-.-+++|.++|.|. -.|+-|+|-
T Consensus 218 lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~----~~~~~i~I~ 257 (260)
T 3kcc_A 218 ITRQEIGQIVGCSRETVGRILKMLEDQNLIS----AHGKTIVVY 257 (260)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----ECSSEEEEC
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----EcCCEEEEE
Confidence 5679999999998888877889999997665 345666664
No 274
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=37.50 E-value=17 Score=24.46 Aligned_cols=16 Identities=50% Similarity=0.667 Sum_probs=14.4
Q ss_pred EEcHHHHHHHHHHHHh
Q 025511 198 YISQAEMKAVADYIKR 213 (251)
Q Consensus 198 YIS~EEm~aVA~fI~q 213 (251)
.+|++|+.+|+.||..
T Consensus 70 ~ls~~ei~~l~~yl~s 85 (87)
T 2zxy_A 70 GLSDAELKALADFILS 85 (87)
T ss_dssp GCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4899999999999975
No 275
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=36.70 E-value=35 Score=28.99 Aligned_cols=86 Identities=14% Similarity=0.175 Sum_probs=61.2
Q ss_pred HHHHHHh-cCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCC-CceEEEcHHHHHHHHHHHHhcC-----CccH
Q 025511 147 FVEYIKK-HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDR-GKYIYISQAEMKAVADYIKRQG-----RVSI 219 (251)
Q Consensus 147 FI~YIK~-~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDR-GKFIYIS~EEm~aVA~fI~qrG-----RVSi 219 (251)
.++++.. ..-+.+.|||...|++..-|-..++.|++.|-|.- |.. |+| .+++.=+.--..+..+.. +-.+
T Consensus 11 IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~~--~~~~~~Y-~lG~~~~~lg~~~~~~~~l~~~a~p~l 87 (260)
T 3r4k_A 11 LLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQEAGFVEQ--VEGARSY-RLGPQVLRLAALREASVPILSASRRVL 87 (260)
T ss_dssp HHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE--CSSSSEE-EECTTHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE--cCCCCcE-EcCHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4445543 56788999999999999999999999999999975 544 676 577765543334444332 2234
Q ss_pred HHHHhhcccccccccc
Q 025511 220 SHLASKSNQFIDLETK 235 (251)
Q Consensus 220 sELa~~sN~lI~L~p~ 235 (251)
.+|+..++.-..|.--
T Consensus 88 ~~L~~~~getv~L~v~ 103 (260)
T 3r4k_A 88 RELSEDTGETTHLSLL 103 (260)
T ss_dssp HHHHHHHSSEEEEEEE
T ss_pred HHHHHHhCCeEEEEEE
Confidence 7888888877766543
No 276
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Probab=36.70 E-value=17 Score=24.75 Aligned_cols=16 Identities=19% Similarity=0.443 Sum_probs=14.6
Q ss_pred EcHHHHHHHHHHHHhc
Q 025511 199 ISQAEMKAVADYIKRQ 214 (251)
Q Consensus 199 IS~EEm~aVA~fI~qr 214 (251)
+|++|+.+|+.||...
T Consensus 68 ls~~ei~~l~~yi~~~ 83 (85)
T 3cu4_A 68 IPPADALKIGEYVVAS 83 (85)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 7999999999999864
No 277
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=36.53 E-value=74 Score=26.47 Aligned_cols=69 Identities=7% Similarity=0.229 Sum_probs=52.5
Q ss_pred cCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceee-eCCCceEEEcHHHHHHHH--HHHHhcCCccHHHHHhhcc
Q 025511 154 HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVM-DDRGKYIYISQAEMKAVA--DYIKRQGRVSISHLASKSN 227 (251)
Q Consensus 154 ~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGVi-DDRGKFIYIS~EEm~aVA--~fI~qrGRVSisELa~~sN 227 (251)
++...+.++|..+|+++. .|.--++.|.|...- |+.|-|=|-|++.+..+. .+.++-| +|++++.+.-+
T Consensus 3 ~~~~~i~e~a~~~gvs~~----tlr~y~~~gll~p~~~d~~~g~R~y~~~~~~~l~~i~~l~~~g-~~l~~i~~~~~ 74 (278)
T 1r8e_A 3 ESYYSIGEVSKLANVSIK----ALRYYDKIDLFKPAYVDPDTSYRYYTDSQLIHLDLIKSLKYIG-TPLEEMKKAQD 74 (278)
T ss_dssp CCEEEHHHHHHHHTCCHH----HHHHHHHTTSSCCSEECTTTCCEEEETGGGGHHHHHHHHHHTT-CCHHHHHHHTT
T ss_pred CCcEeHHHHHHHHCcCHH----HHHHHHHCCCCCCCccCCCCCccccCHHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence 456788999999999764 456678889998875 577778888998887654 3455556 89888877654
No 278
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=36.49 E-value=20 Score=24.30 Aligned_cols=16 Identities=44% Similarity=0.669 Sum_probs=14.5
Q ss_pred EcHHHHHHHHHHHHhc
Q 025511 199 ISQAEMKAVADYIKRQ 214 (251)
Q Consensus 199 IS~EEm~aVA~fI~qr 214 (251)
+|++|+.+|+.||...
T Consensus 72 ls~~ei~~l~~yl~~l 87 (93)
T 3dr0_A 72 LSDADIANVAAYIADQ 87 (93)
T ss_dssp BCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8999999999999864
No 279
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=36.34 E-value=18 Score=24.63 Aligned_cols=16 Identities=50% Similarity=0.748 Sum_probs=14.4
Q ss_pred EEcHHHHHHHHHHHHh
Q 025511 198 YISQAEMKAVADYIKR 213 (251)
Q Consensus 198 YIS~EEm~aVA~fI~q 213 (251)
.+|++|+.+|+.||+.
T Consensus 63 ~Ls~~ei~~l~~Yl~s 78 (79)
T 1c53_A 63 RYSDEEMKAMADYMSK 78 (79)
T ss_pred hCCHHHHHHHHHHHHh
Confidence 3899999999999975
No 280
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=36.32 E-value=19 Score=24.43 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=15.3
Q ss_pred EEcHHHHHHHHHHHHhc
Q 025511 198 YISQAEMKAVADYIKRQ 214 (251)
Q Consensus 198 YIS~EEm~aVA~fI~qr 214 (251)
.+|++|+.+|+.||...
T Consensus 63 ~Lsd~ei~~l~~yl~~l 79 (80)
T 1ayg_A 63 NVTDAEAKQLAQWILSI 79 (80)
T ss_dssp CCCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 79999999999999863
No 281
>3zq7_A KDP operon transcriptional regulatory protein KDP; response regulator; 2.52A {Escherichia coli}
Probab=36.21 E-value=31 Score=24.83 Aligned_cols=35 Identities=11% Similarity=0.270 Sum_probs=30.4
Q ss_pred CCCceEEEcHHHHHHHHHHHHhcCC-ccHHHHHhhc
Q 025511 192 DRGKYIYISQAEMKAVADYIKRQGR-VSISHLASKS 226 (251)
Q Consensus 192 DRGKFIYIS~EEm~aVA~fI~qrGR-VSisELa~~s 226 (251)
-.|+-|.+|+.|+.-++-++...|+ ||..+|....
T Consensus 22 ~~~~~i~Lt~~e~~lL~~L~~~~g~~vsr~~L~~~v 57 (102)
T 3zq7_A 22 RGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 57 (102)
T ss_dssp ETTEEECCCHHHHHHHHHHHHTTTCEEEHHHHHHHH
T ss_pred ECCEEEEcCHHHHHHHHHHHHCCCeeECHHHHHHHh
Confidence 3588899999999999999999998 5778888764
No 282
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MGA family; 2.31A {Enterococcus faecalis}
Probab=36.13 E-value=93 Score=29.15 Aligned_cols=83 Identities=8% Similarity=0.055 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEE--cHHH--------------HHHH
Q 025511 144 LADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYI--SQAE--------------MKAV 207 (251)
Q Consensus 144 L~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYI--S~EE--------------m~aV 207 (251)
....++++-.++-+.+.+||..+|+++--+-+-|+.|...=.-...+.-+|+=+++ ++.. ...+
T Consensus 20 ~~~IL~~L~~~~~it~~eLA~~L~VS~RTIr~dI~~In~~L~~~~~I~~~~~Gy~L~~~~~~~~~~~~~~~~~~eR~~~I 99 (485)
T 3sqn_A 20 QIRLLEQLLNVPQLTAKRLAAQIQTTERTVFSDLQYIRSQLPADWSIETDSSGIRLRNQGNAQTNELWSLFLPQSISIQL 99 (485)
T ss_dssp HHHHHHHHHHCCSCBCGGGHHHHTSCHHHHHHHHHHHHTTCCTTEEEEEETTEEEEEEC---CTHHHHHHHGGGSHHHHH
T ss_pred HHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHHHhcccCcEEEEcCCEEEEecCcHHHHHHHHHhcCHHHHHHHH
Confidence 34566677667789999999999999999999888887652100123234444444 3221 1233
Q ss_pred HHHHHhcCCccHHHHHhhc
Q 025511 208 ADYIKRQGRVSISHLASKS 226 (251)
Q Consensus 208 A~fI~qrGRVSisELa~~s 226 (251)
..++-..+.+|+.+|+..-
T Consensus 100 l~~LL~~~~isi~~Lae~l 118 (485)
T 3sqn_A 100 LKELLFTKELVTTSFLSTS 118 (485)
T ss_dssp HHHHHHCSEEEHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHh
Confidence 4444345677777776653
No 283
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=35.56 E-value=19 Score=24.41 Aligned_cols=39 Identities=26% Similarity=0.389 Sum_probs=25.1
Q ss_pred CChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHhc
Q 025511 168 LRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQ 214 (251)
Q Consensus 168 LrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~qr 214 (251)
.+...++..|. .|. +.|-.-+. .+|++|+.+|+.||...
T Consensus 44 ~~~~~l~~~i~----~g~--~~Mp~~~~--~ls~~ei~~l~~yl~~~ 82 (88)
T 3dmi_A 44 RTEKSIISQVT----GGK--NAMPAFGG--RLSDEEIANVAAYVLAS 82 (88)
T ss_dssp SSHHHHHHHHH----HCB--TTBCCCTT--TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH----cCc--CCCCCcCC--CCCHHHHHHHHHHHHHH
Confidence 34445554443 343 45554443 48999999999999864
No 284
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=35.30 E-value=19 Score=31.79 Aligned_cols=70 Identities=19% Similarity=0.263 Sum_probs=52.8
Q ss_pred CccchHhHHhHc----CCChHHHHHHHHHHHhcCCcceeeeCCCc-eEEEcHHHHHHHH----HHHHhcCCccHHHHHhh
Q 025511 155 KCIPLEDLAAEF----KLRTQECINRITSLENMGRLSGVMDDRGK-YIYISQAEMKAVA----DYIKRQGRVSISHLASK 225 (251)
Q Consensus 155 KVV~LEDLAa~F----gLrTqdvI~RIq~Lea~G~LTGViDDRGK-FIYIS~EEm~aVA----~fI~qrGRVSisELa~~ 225 (251)
=++.|.||-..+ .++++|+..-|+.|..- .=..|++=.|+ ||--.|.|+.... ..+...|.||.++|...
T Consensus 112 Gli~l~el~~~~~r~~~IS~dDi~rAik~L~~L-~gf~v~~v~g~~~vqsvp~el~~D~~~vLe~a~~~g~vt~~~L~~~ 190 (233)
T 1u5t_A 112 GVISFQELEKVHFRKLNVGLDDLEKSIDMLKSL-ECFEIFQIRGKKFLRSVPNELTSDQTKILEICSILGYSSISLLKAN 190 (233)
T ss_dssp SCEEHHHHHHTTTTTTTCCHHHHHHHHHHHTTT-CCCCEEEETTEEEECCSSSCCCTTHHHHHHTTTTTSCCBHHHHHHH
T ss_pred CeeEHHHHHHHHHhhcCCCHHHHHHHHHHhhhc-cCeEEEEECCEEEEEeCCCccchHHHHHHHHHHhcCcCcHHHHHHH
Confidence 489999999988 58999999999999887 44456773455 6666776665433 44466899999999864
No 285
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=35.27 E-value=40 Score=26.33 Aligned_cols=52 Identities=19% Similarity=0.289 Sum_probs=40.6
Q ss_pred HhHcCCChHHHHHHHHHHHhcCCcceee--eCCCce-----EEEcHHHHHHHHHHHHhcCCccH
Q 025511 163 AAEFKLRTQECINRITSLENMGRLSGVM--DDRGKY-----IYISQAEMKAVADYIKRQGRVSI 219 (251)
Q Consensus 163 Aa~FgLrTqdvI~RIq~Lea~G~LTGVi--DDRGKF-----IYIS~EEm~aVA~fI~qrGRVSi 219 (251)
+..+|++-....+-++.|..+|-|.||- ++ +.. ++||++-++ |+...+....
T Consensus 23 ~e~l~Ise~~~~~il~~L~d~GyI~Gv~~~~~-~~~i~~~~~~IT~~Gle----YL~ENS~mkK 81 (102)
T 2hgc_A 23 ENDIGVTEDQFDDAVNFLKREGYIIGVHYSDD-RPHLYKLGPELTEKGEN----YLKENGTWSK 81 (102)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTSEECCEESSS-SEECCSSCCEECHHHHH----HHHHHTCSCC
T ss_pred HHhcCCCHHHHHHHHHHHHHCCCccceEEEeC-cceeeccCceECHHHHH----HHHHChHHHH
Confidence 5677999999999999999999999994 44 444 459998874 6666666653
No 286
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=35.07 E-value=2.2e+02 Score=27.06 Aligned_cols=84 Identities=14% Similarity=0.228 Sum_probs=66.2
Q ss_pred HHHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCC------------------CceEEEcHHHH-
Q 025511 144 LADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDR------------------GKYIYISQAEM- 204 (251)
Q Consensus 144 L~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDR------------------GKFIYIS~EEm- 204 (251)
...-..++-.+--.+|.+|+...+|+...|-+-+--|...|-++=..+++ ||||++-.+++
T Consensus 21 ~~~V~~~Ll~~G~ltL~~I~~~t~L~~~~Vk~~L~vLIQh~lV~~~~~~~~~~~Y~~~~~~il~~lR~pk~l~~i~~~~G 100 (534)
T 2xub_A 21 VEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLVSYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYS 100 (534)
T ss_dssp HHHHHHHHHHHCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTTEEEEEECHHHHHGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHHHHHhcCCeeEEeCCCCcEEEEEChhhHHHHHhhHHHHHHHHHHhc
Confidence 45556677778889999999999999999999999999999997555555 45555555555
Q ss_pred ---HHHHHHHHhcCCccHHHHHhhcc
Q 025511 205 ---KAVADYIKRQGRVSISHLASKSN 227 (251)
Q Consensus 205 ---~aVA~fI~qrGRVSisELa~~sN 227 (251)
..|...|-+.|++++++|...+.
T Consensus 101 ~~a~~I~~~ll~~G~~t~~~ll~~~~ 126 (534)
T 2xub_A 101 DTGELIVEELLLNGKLTMSAVVKKVA 126 (534)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHH
Confidence 44566778899999999977765
No 287
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*
Probab=35.06 E-value=15 Score=25.42 Aligned_cols=16 Identities=13% Similarity=0.397 Sum_probs=14.4
Q ss_pred EEcHHHHHHHHHHHHh
Q 025511 198 YISQAEMKAVADYIKR 213 (251)
Q Consensus 198 YIS~EEm~aVA~fI~q 213 (251)
-+|++|+.+|+.||..
T Consensus 64 ~Lsd~ei~~l~~Yi~~ 79 (81)
T 1kx2_A 64 DCTDEDYKAAIEFMSK 79 (81)
T ss_dssp SCCHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4899999999999975
No 288
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=35.05 E-value=28 Score=21.93 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=19.0
Q ss_pred chHhHHhHcCCChHHHHHHHHHH
Q 025511 158 PLEDLAAEFKLRTQECINRITSL 180 (251)
Q Consensus 158 ~LEDLAa~FgLrTqdvI~RIq~L 180 (251)
-+.+||.++|++..++++.++++
T Consensus 4 rv~~lAkel~~~~k~l~~~l~~~ 26 (49)
T 1nd9_A 4 TIKTLAAERQTSVERLVQQFADA 26 (49)
T ss_dssp CTTHHHHHHSSSHHHHHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHHHHHc
Confidence 46789999999999998777654
No 289
>2q2f_A Selenoprotein S; anti-parallel coiled-coil, endoplasmic reticulum, membrane, selenocysteine, transmembrane, structural genomics; HET: MSE; 1.50A {Homo sapiens}
Probab=34.43 E-value=1.5e+02 Score=23.06 Aligned_cols=12 Identities=17% Similarity=0.194 Sum_probs=5.8
Q ss_pred HHHhhhhHHHHH
Q 025511 69 ARESRQSKQDRY 80 (251)
Q Consensus 69 ~RE~Rk~~e~~~ 80 (251)
.--.|+++|+..
T Consensus 49 l~aaRlRMQEel 60 (89)
T 2q2f_A 49 LAAARLKMQEEL 60 (89)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333455665533
No 290
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=34.17 E-value=21 Score=23.96 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=18.6
Q ss_pred eeeeCCCceEEEcHHHHHHHHHHHHhc
Q 025511 188 GVMDDRGKYIYISQAEMKAVADYIKRQ 214 (251)
Q Consensus 188 GViDDRGKFIYIS~EEm~aVA~fI~qr 214 (251)
++|-.-+. -+|++|+.+|+.||...
T Consensus 56 ~~Mp~~~~--~ls~~ei~~l~~yl~~~ 80 (85)
T 1gdv_A 56 NAMPAFGG--RLVDEDIEDAANYVLSQ 80 (85)
T ss_dssp TTBCCCTT--TSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCC--CCCHHHHHHHHHHHHHH
Confidence 45544333 48999999999999863
No 291
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=34.15 E-value=48 Score=28.49 Aligned_cols=86 Identities=8% Similarity=0.175 Sum_probs=57.0
Q ss_pred HHHHHHHhc-CccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHhcCCc-----cH
Q 025511 146 DFVEYIKKH-KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRV-----SI 219 (251)
Q Consensus 146 ~FI~YIK~~-KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~qrGRV-----Si 219 (251)
+.++++-.. .-+.+.|||...||+..-|-.-++.|+..|-|.= |+.|+|- +++.=+.--..+.....-+ .+
T Consensus 34 ~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~~--~~~~~Y~-LG~~~~~lg~~~~~~~~l~~~a~p~l 110 (275)
T 3mq0_A 34 RILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTELDLLAR--SADGTLR-IGPHSLRWANGFLSHLDIVSTFNDHL 110 (275)
T ss_dssp HHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEEE--CTTSEEE-ECTHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE--CCCCcEE-ehHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 355666554 4689999999999999999999999999999974 5557764 7776444333343332222 23
Q ss_pred HHHHhhccccccccc
Q 025511 220 SHLASKSNQFIDLET 234 (251)
Q Consensus 220 sELa~~sN~lI~L~p 234 (251)
.+|+..++..+.|.-
T Consensus 111 ~~L~~~~~etv~L~v 125 (275)
T 3mq0_A 111 AQRHDLDPYTVTLTV 125 (275)
T ss_dssp HTCGGGTTSEEEEEE
T ss_pred HHHHHHHCCEEEEEE
Confidence 566777776666554
No 292
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=34.13 E-value=19 Score=23.91 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=14.8
Q ss_pred EEcHHHHHHHHHHHHhc
Q 025511 198 YISQAEMKAVADYIKRQ 214 (251)
Q Consensus 198 YIS~EEm~aVA~fI~qr 214 (251)
-+|++|+.+|+.||...
T Consensus 54 ~ls~~ei~~l~~yl~~~ 70 (71)
T 1c75_A 54 IAKGAEAEAVAAWLAEK 70 (71)
T ss_dssp SSCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 38999999999999753
No 293
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=33.99 E-value=31 Score=29.38 Aligned_cols=85 Identities=12% Similarity=0.237 Sum_probs=57.0
Q ss_pred HHHHHHHh-cCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHhc-----CCccH
Q 025511 146 DFVEYIKK-HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQ-----GRVSI 219 (251)
Q Consensus 146 ~FI~YIK~-~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~qr-----GRVSi 219 (251)
+.++++.. ..-+.+.|||..+|++..-+-.-++.|++.|-+.- | .|+| .+++.=+.--..+..+. .+--+
T Consensus 25 ~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~~G~v~~--~-~~~Y-~Lg~~~~~lg~~~~~~~~l~~~a~p~l 100 (265)
T 2ia2_A 25 AVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELGYVAT--D-GSAF-WLTPRVLELGYSYLSSLSLPEVAQPHL 100 (265)
T ss_dssp HHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEE--S-SSEE-EECGGGGGTTHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe--c-CCEE-EEcHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 34556643 46789999999999999999999999999999976 3 3666 57775332222232222 22224
Q ss_pred HHHHhhccccccccc
Q 025511 220 SHLASKSNQFIDLET 234 (251)
Q Consensus 220 sELa~~sN~lI~L~p 234 (251)
.+|+..++.-..|.-
T Consensus 101 ~~L~~~~getv~L~v 115 (265)
T 2ia2_A 101 EKLSHKVHESSSVSI 115 (265)
T ss_dssp HHHHHHHTSEEEEEE
T ss_pred HHHHHHHCCEEEEEE
Confidence 677777777666654
No 294
>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans}
Probab=33.86 E-value=22 Score=24.29 Aligned_cols=17 Identities=18% Similarity=0.348 Sum_probs=15.2
Q ss_pred EEcHHHHHHHHHHHHhc
Q 025511 198 YISQAEMKAVADYIKRQ 214 (251)
Q Consensus 198 YIS~EEm~aVA~fI~qr 214 (251)
-+|++|+.+|+.||+..
T Consensus 69 ~ls~~ei~~l~~yl~~~ 85 (87)
T 2zon_G 69 AADEATLRAAVAYMMDA 85 (87)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 48999999999999864
No 295
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=32.99 E-value=22 Score=23.86 Aligned_cols=16 Identities=31% Similarity=0.580 Sum_probs=14.5
Q ss_pred EcHHHHHHHHHHHHhc
Q 025511 199 ISQAEMKAVADYIKRQ 214 (251)
Q Consensus 199 IS~EEm~aVA~fI~qr 214 (251)
+|++|+.+|+.||...
T Consensus 66 ls~~ei~~l~~yl~~~ 81 (86)
T 3ph2_B 66 LTDDQIAAVAAYVLDQ 81 (86)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 7999999999999864
No 296
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=32.88 E-value=22 Score=24.10 Aligned_cols=17 Identities=29% Similarity=0.472 Sum_probs=14.9
Q ss_pred EEcHHHHHHHHHHHHhc
Q 025511 198 YISQAEMKAVADYIKRQ 214 (251)
Q Consensus 198 YIS~EEm~aVA~fI~qr 214 (251)
.+|++|+.+|+.||...
T Consensus 68 ~ls~~ei~~l~~yl~~~ 84 (89)
T 1f1f_A 68 RLSPLQIEDVAAYVVDQ 84 (89)
T ss_dssp TSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 38999999999999863
No 297
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=32.66 E-value=64 Score=26.08 Aligned_cols=45 Identities=22% Similarity=0.318 Sum_probs=38.9
Q ss_pred cCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEE
Q 025511 154 HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIY 198 (251)
Q Consensus 154 ~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIY 198 (251)
.+.+...+||..+|++..-+-.-++.|.+.|-|..+-...|-|.-
T Consensus 42 ~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~L 86 (159)
T 3lwf_A 42 DGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVL 86 (159)
T ss_dssp SCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEEEE
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCCCceEe
Confidence 468999999999999999999999999999999988666565653
No 298
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=32.32 E-value=68 Score=23.30 Aligned_cols=55 Identities=7% Similarity=0.252 Sum_probs=39.1
Q ss_pred HHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHhcCCccHHHHH
Q 025511 147 FVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVSISHLA 223 (251)
Q Consensus 147 FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~qrGRVSisELa 223 (251)
+-.+.+.+. +...+||...|++. ..|.+|.. |+. +|.+-+.++|++.. |++.+|.
T Consensus 29 Lk~lR~~~g-lTq~eLA~~~GiS~-~tis~iE~--------------G~~--~s~~~l~kIa~~L~----v~~~~L~ 83 (88)
T 3t76_A 29 LWKLLIDRD-MKKGELREAVGVSK-STFAKLGK--------------NEN--VSLTVLLAICEYLN----CDFGDII 83 (88)
T ss_dssp HHHHHHHTT-CCHHHHHHHHTCCH-HHHHHHHT--------------TCC--CCHHHHHHHHHHHT----CCGGGTC
T ss_pred HHHHHHHcC-CCHHHHHHHHCcCH-HHHHHHHc--------------CCC--cCHHHHHHHHHHHC----cCHHHHh
Confidence 333444444 57799999999954 56666652 454 69999999999985 6776664
No 299
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=32.19 E-value=1.4e+02 Score=25.71 Aligned_cols=56 Identities=11% Similarity=0.291 Sum_probs=43.6
Q ss_pred HHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHH
Q 025511 145 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAE 203 (251)
Q Consensus 145 ~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EE 203 (251)
..-|-|.-.+.-...++||..+|++...|-..+..|.+.|-+.-. ++-=|-|.++-
T Consensus 167 ~~~l~~~l~~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~~~---~~~~~~~~~~~ 222 (232)
T 2qlz_A 167 LAILHYLLLNGRATVEELSDRLNLKEREVREKISEMARFVPVKII---NDNTVVLDEDQ 222 (232)
T ss_dssp HHHHHHHHHSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEEEE---TTTEEEECHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeEEe---cCCeEEecHHH
Confidence 445566678899999999999999999999999999999988622 22335555554
No 300
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1
Probab=32.17 E-value=23 Score=24.39 Aligned_cols=40 Identities=20% Similarity=0.415 Sum_probs=25.5
Q ss_pred CCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHhc
Q 025511 167 KLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQ 214 (251)
Q Consensus 167 gLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~qr 214 (251)
+.+...+...|. .|. |.|-.-+. -+|++|+.+|+.||+..
T Consensus 46 ~~~~~~l~~~i~----~g~--~~Mp~~~~--~ls~~ei~~l~~yl~~~ 85 (91)
T 1ls9_A 46 GLTLEAIKYQVN----NGK--GAMPAWAD--RLDEDDIEAVSNYVYDQ 85 (91)
T ss_dssp CSCHHHHHHHHH----HCB--TTBCCCTT--TSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHH----cCc--CCCcchhh--hCCHHHHHHHHHHHHHh
Confidence 344455555554 343 45554332 38999999999999864
No 301
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=32.12 E-value=1.4e+02 Score=23.16 Aligned_cols=75 Identities=9% Similarity=0.175 Sum_probs=54.1
Q ss_pred HHHHHHh-cCccchHhHHhHc-----CCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHhcCCccHH
Q 025511 147 FVEYIKK-HKCIPLEDLAAEF-----KLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVSIS 220 (251)
Q Consensus 147 FI~YIK~-~KVV~LEDLAa~F-----gLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~qrGRVSis 220 (251)
.++++.. ..-+..+||...+ +++..-|-.-++.|.+.|.|.-+-.+.|...|-... + -. .
T Consensus 27 Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~~------------~-~H-~ 92 (145)
T 2fe3_A 27 ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTYGDASSRFDFVT------------S-DH-Y 92 (145)
T ss_dssp HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECCTTSCCEEEECC------------C-CE-E
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEeeCCCceEEECCC------------C-Cc-c
Confidence 4444544 4578899999888 899999999999999999999998888887775320 0 01 1
Q ss_pred HH-Hhhcccccccccc
Q 025511 221 HL-ASKSNQFIDLETK 235 (251)
Q Consensus 221 EL-a~~sN~lI~L~p~ 235 (251)
+| =..|++++.+...
T Consensus 93 HliC~~Cg~v~~~~~~ 108 (145)
T 2fe3_A 93 HAICENCGKIVDFHYP 108 (145)
T ss_dssp EEEETTTCCEEECCCC
T ss_pred eEEECCCCCEEEecCC
Confidence 22 2578888888643
No 302
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=31.79 E-value=23 Score=23.76 Aligned_cols=16 Identities=19% Similarity=0.383 Sum_probs=14.8
Q ss_pred EEcHHHHHHHHHHHHh
Q 025511 198 YISQAEMKAVADYIKR 213 (251)
Q Consensus 198 YIS~EEm~aVA~fI~q 213 (251)
.+|++|+.+|+.||..
T Consensus 65 ~ls~~ei~~l~~yl~~ 80 (82)
T 2exv_A 65 AVSDDEAQTLAKWVLS 80 (82)
T ss_dssp CCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 7899999999999975
No 303
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=31.57 E-value=25 Score=23.48 Aligned_cols=16 Identities=19% Similarity=0.424 Sum_probs=14.9
Q ss_pred EEcHHHHHHHHHHHHh
Q 025511 198 YISQAEMKAVADYIKR 213 (251)
Q Consensus 198 YIS~EEm~aVA~fI~q 213 (251)
.+|++|+.+|+.||..
T Consensus 65 ~ls~~ei~~l~~yl~~ 80 (82)
T 1cch_A 65 PVTEEEAKILAEWVLS 80 (82)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 6999999999999975
No 304
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1
Probab=31.50 E-value=22 Score=24.96 Aligned_cols=16 Identities=25% Similarity=0.206 Sum_probs=14.4
Q ss_pred EEcHHHHHHHHHHHHh
Q 025511 198 YISQAEMKAVADYIKR 213 (251)
Q Consensus 198 YIS~EEm~aVA~fI~q 213 (251)
.+|++|+.+|+.||..
T Consensus 67 ~Lsd~ei~~v~~yi~~ 82 (83)
T 1cc5_A 67 DCSDDELKAAIGKMSG 82 (83)
T ss_dssp SCCHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4899999999999975
No 305
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=31.48 E-value=57 Score=19.08 Aligned_cols=37 Identities=5% Similarity=0.035 Sum_probs=25.7
Q ss_pred HHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcC
Q 025511 146 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMG 184 (251)
Q Consensus 146 ~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G 184 (251)
.++.+.... ....++|..||++..-|-..++.....|
T Consensus 13 ~i~~~~~~g--~s~~~IA~~lgis~~Tv~~~~~~~~~~g 49 (51)
T 1tc3_C 13 QLDVMKLLN--VSLHEMSRKISRSRHCIRVYLKDPVSYG 49 (51)
T ss_dssp HHHHHHHTT--CCHHHHHHHHTCCHHHHHHHHHCSTTTT
T ss_pred HHHHHHHcC--CCHHHHHHHHCcCHHHHHHHHhhHHhcC
Confidence 444444332 4688999999999887777776665544
No 306
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=31.42 E-value=88 Score=27.58 Aligned_cols=72 Identities=24% Similarity=0.387 Sum_probs=52.2
Q ss_pred cCccchHhHHhHc---------CCChHHHHHHHHHHHhcCCcceeeeCCCc-eEEEcHHHHH----HHHHHHHhcCCccH
Q 025511 154 HKCIPLEDLAAEF---------KLRTQECINRITSLENMGRLSGVMDDRGK-YIYISQAEMK----AVADYIKRQGRVSI 219 (251)
Q Consensus 154 ~KVV~LEDLAa~F---------gLrTqdvI~RIq~Lea~G~LTGViDDRGK-FIYIS~EEm~----aVA~fI~qrGRVSi 219 (251)
-=++.|.||-..+ .++++|+..-|+.|..-|.=..|+.=.|+ ||--.|.|+. .|...+...|.||.
T Consensus 92 GGli~L~el~~~~~r~Rg~~~~~IS~dDi~rAik~L~~LG~g~~v~~~~g~~~VqSvp~el~~D~~~vLela~~~g~vt~ 171 (234)
T 3cuq_A 92 GGLITLEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTVVLQLAEKNGYVTV 171 (234)
T ss_dssp SSEEEHHHHHHHHHHTTTTCCSSCCHHHHHHHHHHHGGGBTTCEEEEETTEEEEECSCCCCCHHHHHHHHHHTTTSEECH
T ss_pred CCeeEHHHHHHHHHHhcCCccCccCHHHHHHHHHHHHhcCCCeEEEEECCEEEEEeCCCccchHHHHHHHHHHhcCcCcH
Confidence 3588888877766 57999999999999999854556652265 5555664443 34455667899999
Q ss_pred HHHHhh
Q 025511 220 SHLASK 225 (251)
Q Consensus 220 sELa~~ 225 (251)
++|...
T Consensus 172 ~~L~~~ 177 (234)
T 3cuq_A 172 SEIKAS 177 (234)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999865
No 307
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=31.40 E-value=1.2e+02 Score=28.66 Aligned_cols=10 Identities=10% Similarity=0.421 Sum_probs=4.9
Q ss_pred HHHHHHHHHh
Q 025511 144 LADFVEYIKK 153 (251)
Q Consensus 144 L~~FI~YIK~ 153 (251)
+++.++-+++
T Consensus 430 ~D~Ll~~l~s 439 (457)
T 3obv_E 430 MDSLLEALQS 439 (457)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 4455555543
No 308
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=31.39 E-value=20 Score=24.32 Aligned_cols=16 Identities=44% Similarity=0.615 Sum_probs=14.5
Q ss_pred EEcHHHHHHHHHHHHh
Q 025511 198 YISQAEMKAVADYIKR 213 (251)
Q Consensus 198 YIS~EEm~aVA~fI~q 213 (251)
.+|++|+.+|+.||..
T Consensus 64 ~Ls~~ei~~l~~yl~~ 79 (81)
T 1a56_A 64 NVSDADAKALADWILT 79 (81)
T ss_dssp SSSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4899999999999975
No 309
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=31.29 E-value=48 Score=29.00 Aligned_cols=49 Identities=18% Similarity=0.248 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCc
Q 025511 142 DLLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGK 195 (251)
Q Consensus 142 ~lL~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGK 195 (251)
.++.-.+..+-.-+-|.+++||...|.+.+++...+++|- .=++|+.|+
T Consensus 22 ~~~~~llr~la~Grpv~~~~LA~~~g~~~~~v~~~L~~l~-----~~~~D~~G~ 70 (220)
T 3f2g_A 22 DLLVPLLRELAKGRPVSRTTLAGILDWPAERVAAVLEQAT-----STEYDKDGN 70 (220)
T ss_dssp HHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHCT-----TCEECTTSC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHhCC-----cEEECCCCC
Confidence 4455555556689999999999999999999999998884 224666665
No 310
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=31.13 E-value=16 Score=28.34 Aligned_cols=32 Identities=16% Similarity=0.258 Sum_probs=24.8
Q ss_pred hcCCcceeeeCCCceEEEcHHHHHHHHHHHHhcCCccHHHHHhhccccc
Q 025511 182 NMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVSISHLASKSNQFI 230 (251)
Q Consensus 182 a~G~LTGViDDRGKFIYIS~EEm~aVA~fI~qrGRVSisELa~~sN~lI 230 (251)
....+-.|+|+.|+++ |=||.+||.++-|+++
T Consensus 113 ~~~~~lpVVd~~g~l~-----------------GiiT~~Dil~~~~~~~ 144 (156)
T 3k6e_A 113 VDESFLPVVDAEGIFQ-----------------GIITRKSILKAVNALL 144 (156)
T ss_dssp TTSSEEEEECTTSBEE-----------------EEEEHHHHHHHHHHHS
T ss_pred HHcCCeEEEecCCEEE-----------------EEEEHHHHHHHHHHHh
Confidence 3445688999999987 7788888887777665
No 311
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=31.05 E-value=25 Score=23.94 Aligned_cols=16 Identities=38% Similarity=0.598 Sum_probs=14.7
Q ss_pred EcHHHHHHHHHHHHhc
Q 025511 199 ISQAEMKAVADYIKRQ 214 (251)
Q Consensus 199 IS~EEm~aVA~fI~qr 214 (251)
+|++|+.+|+.||...
T Consensus 68 ls~~ei~~l~~yl~~~ 83 (89)
T 1c6r_A 68 LDDDEIAAVAAYVYDQ 83 (89)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8999999999999864
No 312
>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} SCOP: a.3.1.0
Probab=30.71 E-value=22 Score=25.60 Aligned_cols=15 Identities=20% Similarity=0.468 Sum_probs=14.2
Q ss_pred EcHHHHHHHHHHHHh
Q 025511 199 ISQAEMKAVADYIKR 213 (251)
Q Consensus 199 IS~EEm~aVA~fI~q 213 (251)
+|++|+.+|+.||++
T Consensus 82 Lsd~ei~~l~~Yi~~ 96 (99)
T 3dp5_A 82 IPPADALKIGEYVVA 96 (99)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 899999999999985
No 313
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=30.42 E-value=25 Score=23.99 Aligned_cols=16 Identities=44% Similarity=0.796 Sum_probs=14.7
Q ss_pred EcHHHHHHHHHHHHhc
Q 025511 199 ISQAEMKAVADYIKRQ 214 (251)
Q Consensus 199 IS~EEm~aVA~fI~qr 214 (251)
+|++|+.+|+.||+..
T Consensus 67 ls~~ei~~l~~yl~~~ 82 (90)
T 1cyi_A 67 LSEEEIQAVAEYVFKQ 82 (90)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc
Confidence 8999999999999864
No 314
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=30.34 E-value=19 Score=24.27 Aligned_cols=16 Identities=6% Similarity=0.426 Sum_probs=14.4
Q ss_pred EEcHHHHHHHHHHHHh
Q 025511 198 YISQAEMKAVADYIKR 213 (251)
Q Consensus 198 YIS~EEm~aVA~fI~q 213 (251)
-+|++|+.+|+.||..
T Consensus 62 ~Ls~~ei~~l~~yl~~ 77 (79)
T 2d0s_A 62 QVAEADIEKIVRWVLT 77 (79)
T ss_dssp TSCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4799999999999975
No 315
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A
Probab=30.24 E-value=1.4e+02 Score=21.39 Aligned_cols=33 Identities=9% Similarity=0.272 Sum_probs=19.6
Q ss_pred EcHHHHHHHHHHH--HhcCCccHHHHHhhcccccc
Q 025511 199 ISQAEMKAVADYI--KRQGRVSISHLASKSNQFID 231 (251)
Q Consensus 199 IS~EEm~aVA~fI--~qrGRVSisELa~~sN~lI~ 231 (251)
+|++++..+-.-+ ...|+||..|+.....++..
T Consensus 129 ~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~~~~~~ 163 (166)
T 3akb_A 129 VPEDLARQAAAALDTDGDGKVGETEIVPAFARYFT 163 (166)
T ss_dssp CCHHHHHHHHHHHCTTCSSBCCHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhc
Confidence 4555555554444 33578888887777655544
No 316
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=30.15 E-value=1.1e+02 Score=22.17 Aligned_cols=73 Identities=14% Similarity=0.256 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHhcCCccHHHH
Q 025511 143 LLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVSISHL 222 (251)
Q Consensus 143 lL~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~qrGRVSisEL 222 (251)
.+...|..+...+=....+||...|++ +..|.+|.. |+. .+|.+-+.++|++.. |++.+|
T Consensus 28 ~~g~~l~~~R~~~glsq~~lA~~~gis-~~~is~~E~--------------g~~-~~~~~~l~~la~~l~----v~~~~l 87 (117)
T 3f52_A 28 ALGAALRSFRADKGVTLRELAEASRVS-PGYLSELER--------------GRK-EVSSELLASVCHALG----ASVADV 87 (117)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHTTSC-HHHHHHHHT--------------TSS-CCCHHHHHHHHHHHT----CCHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcC-HHHHHHHHC--------------CCC-CCCHHHHHHHHHHhC----CCHHHH
Confidence 455666666666667899999999995 455666642 443 479999999999874 888888
Q ss_pred Hhhcccccccccc
Q 025511 223 ASKSNQFIDLETK 235 (251)
Q Consensus 223 a~~sN~lI~L~p~ 235 (251)
......-..+...
T Consensus 88 ~~~~~~~~~~~~~ 100 (117)
T 3f52_A 88 LIEAAGSMALQAA 100 (117)
T ss_dssp HHHHHHHHCCC--
T ss_pred Hhccccccccchh
Confidence 8776665555444
No 317
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Probab=30.13 E-value=91 Score=23.34 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=12.3
Q ss_pred hHhHHhHcCCChHHHHHHHHHHHh
Q 025511 159 LEDLAAEFKLRTQECINRITSLEN 182 (251)
Q Consensus 159 LEDLAa~FgLrTqdvI~RIq~Lea 182 (251)
+..+...++++.+++-.-.+.+-.
T Consensus 13 l~~l~~~~~~~~~~i~~~f~~fd~ 36 (190)
T 1g8i_A 13 VEELTRKTYFTEKEVQQWYKGFIK 36 (190)
T ss_dssp HHHHHHTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHH
Confidence 344555556655555554444433
No 318
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=30.01 E-value=1.2e+02 Score=20.71 Aligned_cols=62 Identities=18% Similarity=0.211 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHhcCCccHHHHHh
Q 025511 145 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVSISHLAS 224 (251)
Q Consensus 145 ~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~qrGRVSisELa~ 224 (251)
-..|.+....+=+...+||...|++ +..|.+|.. |+-..+|.+.+.++|++.. |++.+|..
T Consensus 12 ~~~ik~~R~~~gltq~elA~~~gis-~~~is~~E~--------------G~~~~p~~~~l~~ia~~l~----v~~~~l~~ 72 (78)
T 3qq6_A 12 GQRIKQYRKEKGYSLSELAEKAGVA-KSYLSSIER--------------NLQTNPSIQFLEKVSAVLD----VSVHTLLD 72 (78)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTCC-HHHHHHHHT--------------TSCCCCBHHHHHHHHHHHT----CCHHHHHH
T ss_pred cHHHHHHHHHcCCCHHHHHHHHCcC-HHHHHHHHc--------------CCCCCCCHHHHHHHHHHHC----cCHHHHhC
Confidence 3456666677777899999999995 445555532 4233579999999999984 77777764
Q ss_pred h
Q 025511 225 K 225 (251)
Q Consensus 225 ~ 225 (251)
.
T Consensus 73 ~ 73 (78)
T 3qq6_A 73 E 73 (78)
T ss_dssp S
T ss_pred C
Confidence 3
No 319
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*
Probab=29.87 E-value=30 Score=23.71 Aligned_cols=18 Identities=22% Similarity=0.575 Sum_probs=15.7
Q ss_pred EEcHHHHHHHHHHHHhcC
Q 025511 198 YISQAEMKAVADYIKRQG 215 (251)
Q Consensus 198 YIS~EEm~aVA~fI~qrG 215 (251)
.+|++|+.+|+.||....
T Consensus 57 ~ls~~ei~~l~~yl~~~~ 74 (80)
T 1wve_C 57 YVDDESLTQVAEYLSSLP 74 (80)
T ss_dssp TSCHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHCc
Confidence 379999999999998754
No 320
>3v4g_A Arginine repressor; vibrio vulnificus CMCP6, virulence, type secretion system, center for structural genomics of infecti diseases, csgid; 1.60A {Vibrio vulnificus} PDB: 1aoy_A
Probab=29.80 E-value=1.5e+02 Score=25.19 Aligned_cols=62 Identities=15% Similarity=0.279 Sum_probs=46.0
Q ss_pred chhHHHHHHHHHHhcCccchHhHHhH---cCCC--hHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHH
Q 025511 140 DRDLLADFVEYIKKHKCIPLEDLAAE---FKLR--TQECINRITSLENMGRLSGVMDDRGKYIYISQAEM 204 (251)
Q Consensus 140 sq~lL~~FI~YIK~~KVV~LEDLAa~---FgLr--TqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm 204 (251)
..+++..+..-|+.+.|-.=+||+.. -|+. ||-+|+| +|-+.| +.=|-+..|+|+|.-|.+.
T Consensus 31 ~~~r~~~I~eiI~~~~I~TQeEL~~~L~~~Gi~viTQATvSR--DIkELg-lvKv~~~~G~~~Y~lp~~~ 97 (180)
T 3v4g_A 31 QDNLVRAFKALLKEERFGSQGEIVEALKQEGFENINQSKVSR--MLTKFG-AVRTRNAKMEMVYCLPTEL 97 (180)
T ss_dssp HHHHHHHHHHHHHHTCCCSHHHHHHHHHHTTCTTCCHHHHHH--HHHHTT-CEEEECTTSCEEEECC---
T ss_pred HHHHHHHHHHHHhhCCcCCHHHHHHHHHHCCCcccCHHHHHH--HHHHcC-CEEeeCCCCCEEEEeCCcc
Confidence 45678888889999999988887754 3666 7999998 444444 4558889999999988774
No 321
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=29.72 E-value=29 Score=31.65 Aligned_cols=48 Identities=8% Similarity=0.276 Sum_probs=26.9
Q ss_pred ccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCc-eEEEcHHHHHHHHH
Q 025511 156 CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGK-YIYISQAEMKAVAD 209 (251)
Q Consensus 156 VV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGK-FIYIS~EEm~aVA~ 209 (251)
.+.++|||..-|++++|||.-++. .|.|. . .+|. .|.|+++-++...+
T Consensus 212 ~isi~~is~~T~i~~~Dii~tL~~---l~~l~--~-~kg~~~i~~~~~~i~~~~~ 260 (280)
T 2ou2_A 212 QITINEISEITSIKKEDVISTLQY---LNLIN--Y-YKGQYILTLSEDIVDGHER 260 (280)
T ss_dssp CCBHHHHHHHHCBCHHHHHHHHHH---TTCCC--B-CSSSBBC------------
T ss_pred ceeHHHHHHHhCCCHHHHHHHHHH---CCcEE--E-ECCeEEEEECHHHHHHHHH
Confidence 689999999999999999876554 56663 2 2454 46678766655444
No 322
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=29.66 E-value=62 Score=26.80 Aligned_cols=46 Identities=11% Similarity=0.166 Sum_probs=37.5
Q ss_pred HHHHHHHHhc-Cc----cchH-h-HHhHcCCChHHHHHHHHHHHhcCCcceeeeC
Q 025511 145 ADFVEYIKKH-KC----IPLE-D-LAAEFKLRTQECINRITSLENMGRLSGVMDD 192 (251)
Q Consensus 145 ~~FI~YIK~~-KV----V~LE-D-LAa~FgLrTqdvI~RIq~Lea~G~LTGViDD 192 (251)
+..++++... -. |.-. + +|..||.+..-+.+.|..++++|.+ ++||
T Consensus 102 ~~il~~~~~~~g~d~~~vt~~~~~la~~~~ws~~~a~e~L~~~e~~G~l--~~D~ 154 (169)
T 1u5t_B 102 EKLVDLIGDNPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDEGDL--LIDK 154 (169)
T ss_dssp HHHHHHHHHSCSBCHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTSE--EEEE
T ss_pred HHHHHHHHhcCCCCcccccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCE--EEEC
Confidence 3445667654 55 6667 8 9999999999999999999999987 6786
No 323
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=29.61 E-value=79 Score=31.26 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHhcCccchHhHHhHcC-------CChHHHHHHHHHHHhcCCcceeeeC--CCceEEE
Q 025511 142 DLLADFVEYIKKHKCIPLEDLAAEFK-------LRTQECINRITSLENMGRLSGVMDD--RGKYIYI 199 (251)
Q Consensus 142 ~lL~~FI~YIK~~KVV~LEDLAa~Fg-------LrTqdvI~RIq~Lea~G~LTGViDD--RGKFIYI 199 (251)
......++++..+.-|...+||..|| .+..-+.+.|+.++.+|.| ++|| .|-|-|.
T Consensus 494 ~~~~~il~l~~~~g~vT~~~la~~lg~~~~~~~Ws~~~A~e~L~~~e~eG~l--~rDd~~~G~~yyp 558 (566)
T 1w7p_D 494 VVKEKLVDLIGDNPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDEGDL--LIDKQLSGIYYYK 558 (566)
T ss_dssp HHHHHHHHHHTTSTTCCHHHHHHHHSCSSSCCCBCHHHHHHHHHHHHHTTSE--EEEEETTEEEEEE
T ss_pred HHHHHHHHHHHhcCCcCHHHHHHHhCCccccCcccHHHHHHHHHHHHHcCCE--EEECCCCceEEeh
Confidence 45566677888899999999999999 9999999999999999987 6886 3655554
No 324
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=29.34 E-value=51 Score=24.84 Aligned_cols=52 Identities=17% Similarity=0.237 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCC-CceEEEcHHHHHHHHHH
Q 025511 142 DLLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDR-GKYIYISQAEMKAVADY 210 (251)
Q Consensus 142 ~lL~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDR-GKFIYIS~EEm~aVA~f 210 (251)
+.....++|+..++ +.+.|||..+|++. .+|.|.- .++ + +||++=...|.+.
T Consensus 7 ~R~~~I~~~l~~~~-~ti~dlA~~~gVS~-~TVsR~L------------~~~~~---~Vs~~tr~rV~~a 59 (93)
T 2l0k_A 7 ERTIKIGKYIVETK-KTVRVIAKEFGVSK-STVHKDL------------TERLP---EINPDLANEVKEI 59 (93)
T ss_dssp HHHHHHHHHHHHHC-CCHHHHHHHHTSCH-HHHHHHH------------TTHHH---HHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHCCCH-HHHHHHH------------cCCCC---CCCHHHHHHHHHH
Confidence 34567788898888 89999999999965 5566631 222 2 3788777777665
No 325
>4b6a_O 60S ribosomal protein L16-A; large ribosomal subunit, ribosome biogenesis, ribosome matur factor, ribosome; 8.10A {Saccharomyces cerevisiae} PDB: 3izc_K 3izs_K 3o58_P 3o5h_P 3u5e_O 3u5i_O 1s1i_M
Probab=29.20 E-value=34 Score=29.73 Aligned_cols=27 Identities=11% Similarity=0.299 Sum_probs=24.4
Q ss_pred hcCccchHhHHhHcCCChHHHHHHHHH
Q 025511 153 KHKCIPLEDLAAEFKLRTQECINRITS 179 (251)
Q Consensus 153 ~~KVV~LEDLAa~FgLrTqdvI~RIq~ 179 (251)
.+|.+.|.+||.++|-+-+++|++++.
T Consensus 132 ~~Ky~~lg~ls~~~Gwk~~~vv~~le~ 158 (199)
T 4b6a_O 132 GRKYTTLGKLSTSVGWKYEDVVAKLEA 158 (199)
T ss_dssp TCCEEEHHHHHHHTTCCCHHHHHHHHH
T ss_pred CCCeEEhhhhHHHhCccHHHHHHHHHH
Confidence 469999999999999999999988764
No 326
>3o18_A C-phycocyanin alpha subunit; phycobilisome, photosynthesis, light harvesting, cyanobacter; HET: CYC; 1.35A {Thermosynechococcus vulcanus} SCOP: a.1.1.3 PDB: 1i7y_A* 1on7_A* 1ktp_A* 3o2c_A* 3l0f_A* 1jbo_A* 3kvs_A* 3brp_A* 1phn_A* 2bv8_A* 1f99_A* 1gh0_A* 2uum_A* 1ha7_A* 1cpc_A* 2uul_C* 2uul_A* 2uun_A*
Probab=28.66 E-value=14 Score=30.65 Aligned_cols=39 Identities=28% Similarity=0.559 Sum_probs=29.8
Q ss_pred eCCCceEEEcHHHHHHHHHHHHh-cCCccH-HHHHhhcccccc
Q 025511 191 DDRGKYIYISQAEMKAVADYIKR-QGRVSI-SHLASKSNQFID 231 (251)
Q Consensus 191 DDRGKFIYIS~EEm~aVA~fI~q-rGRVSi-sELa~~sN~lI~ 231 (251)
|.+|+| +|+.||+++..|+.. .=|+.. .-|..+.+.|++
T Consensus 13 D~~gRy--ls~~EL~~l~~~~~~~~~Rl~aa~~l~~na~~Iv~ 53 (162)
T 3o18_A 13 DTQGRF--LSNTELQAVDGRFKRAVASMEAARALTNNAQSLID 53 (162)
T ss_dssp HHTTCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HhcCCC--CCHHHHHHHHHHHhchHHHHHHHHHHHHhHHHHHH
Confidence 557775 799999999999987 357776 466666666665
No 327
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=28.51 E-value=1e+02 Score=24.52 Aligned_cols=42 Identities=21% Similarity=0.135 Sum_probs=21.2
Q ss_pred cccccccccccchhHHHHHHHHHhhhhhhhhHHhHHhhhhhHH
Q 025511 23 GYESSTRKDTRANSLLLILVCLCTSFLFLLSFSLLFDMFDLKA 65 (251)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rea 65 (251)
||-.-+.. |.+.-++.++.+++...+|...++.+...+....
T Consensus 83 GyGDi~P~-t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~ 124 (166)
T 3pjs_K 83 GYGDLYPV-TLWGRLVAVVVMVAGITSFGLVTAALATWFVGQE 124 (166)
T ss_dssp CCSSSCCC-SSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSH
T ss_pred cCCCCCCC-CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55443322 2333344455555555556666666666665443
No 328
>2ce0_A Cytochrome C6; chloroplast, electron transport, heme, iron, thylakoid, photosynthesis, metal-binding, electron transfer; HET: HEC; 1.24A {Arabidopsis thaliana} PDB: 2ce1_A* 2dge_A* 2v07_A*
Probab=28.36 E-value=32 Score=24.12 Aligned_cols=17 Identities=29% Similarity=0.550 Sum_probs=15.2
Q ss_pred EEcHHHHHHHHHHHHhc
Q 025511 198 YISQAEMKAVADYIKRQ 214 (251)
Q Consensus 198 YIS~EEm~aVA~fI~qr 214 (251)
-+|++|+.+|+.||+..
T Consensus 78 ~ls~~ei~~l~~yl~~~ 94 (105)
T 2ce0_A 78 RLQDEEIKLLAEFVKFQ 94 (105)
T ss_dssp CBCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 48999999999999864
No 329
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=28.15 E-value=35 Score=23.42 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=15.0
Q ss_pred EcHHHHHHHHHHHHhcC
Q 025511 199 ISQAEMKAVADYIKRQG 215 (251)
Q Consensus 199 IS~EEm~aVA~fI~qrG 215 (251)
+|++|+.+|+.||+...
T Consensus 67 ls~~ei~~l~~yl~~l~ 83 (87)
T 1cno_A 67 LSDADIANLAAYYASNP 83 (87)
T ss_dssp CCHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHhCC
Confidence 79999999999998753
No 330
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=28.06 E-value=31 Score=25.15 Aligned_cols=25 Identities=8% Similarity=0.224 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhc------CCccHHHHHhhcc
Q 025511 203 EMKAVADYIKRQ------GRVSISHLASKSN 227 (251)
Q Consensus 203 Em~aVA~fI~qr------GRVSisELa~~sN 227 (251)
=.+.|-+||++. |.+|+.||++..+
T Consensus 5 r~~~IL~~I~~~i~~~~g~~psv~EIa~~lg 35 (77)
T 2jt1_A 5 IVTKIISIVQERQNMDDGAPVKTRDIADAAG 35 (77)
T ss_dssp HHHHHHHHHHHHHHHHTTSCEEHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhccCCCcCHHHHHHHHC
Confidence 345677777777 9999999999875
No 331
>3lap_A Arginine repressor; arginine repressor, DNA binding, DNA-canavanine ternary complex; HET: GGB; 2.15A {Mycobacterium tuberculosis} PDB: 3fhz_A* 3ere_D* 3laj_A*
Probab=28.05 E-value=80 Score=26.37 Aligned_cols=58 Identities=21% Similarity=0.275 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHhcCccchHhHHhH-----cCCChHHHHHH-HHHHHhcCCcceeeeCCCce-EEEcHHHH
Q 025511 142 DLLADFVEYIKKHKCIPLEDLAAE-----FKLRTQECINR-ITSLENMGRLSGVMDDRGKY-IYISQAEM 204 (251)
Q Consensus 142 ~lL~~FI~YIK~~KVV~LEDLAa~-----FgLrTqdvI~R-Iq~Lea~G~LTGViDDRGKF-IYIS~EEm 204 (251)
..+..+..-|..+.|-.=+||+.. |.+ ||-+|+| |++| .+.=|-+..|+| +|.-|++.
T Consensus 20 ~R~~~I~~iI~~~~I~tQeEL~~~L~~~Gi~v-TQATlSRDikEL----~lvKv~~~~G~~~~Y~lp~~~ 84 (170)
T 3lap_A 20 GRQARIVAILSSAQVRSQNELAALLAAEGIEV-TQATLSRDLEEL----GAVKLRGADGGTGIYVVPEDG 84 (170)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCC-CHHHHHHHHHHH----TCEEECCTTCTTCEEECCC--
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCc-CchhHHHHHHHc----CcEEeecCCCCEEEEEECccc
Confidence 345667778999999998888765 445 9999998 5555 356688899999 99887664
No 332
>2pmu_A Response regulator PHOP; winged helix-TUN-HELX, transcription regulation; 1.78A {Mycobacterium tuberculosis}
Probab=28.04 E-value=57 Score=23.97 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=30.0
Q ss_pred CCceEEEcHHHHHHHHHHHHhcCC-ccHHHHHhhc
Q 025511 193 RGKYIYISQAEMKAVADYIKRQGR-VSISHLASKS 226 (251)
Q Consensus 193 RGKFIYIS~EEm~aVA~fI~qrGR-VSisELa~~s 226 (251)
.|+-|-+|+.|+.-++-++...|+ ||..+|....
T Consensus 29 ~g~~i~Lt~~E~~lL~~L~~~~g~~vsr~~L~~~v 63 (110)
T 2pmu_A 29 AGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHV 63 (110)
T ss_dssp TTEEECCCHHHHHHHHHHHHTTTSCBCHHHHHHHH
T ss_pred CCEEEecCHHHHHHHHHHHHCCCEEEcHHHHHHHH
Confidence 588899999999999999999998 5778888765
No 333
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=27.62 E-value=1.9e+02 Score=21.59 Aligned_cols=50 Identities=16% Similarity=0.184 Sum_probs=40.1
Q ss_pred cCCChHHHHHHHHHHHhcCCcceeee----C-CCceEEEcHHHHHHHHHHHHhcC
Q 025511 166 FKLRTQECINRITSLENMGRLSGVMD----D-RGKYIYISQAEMKAVADYIKRQG 215 (251)
Q Consensus 166 FgLrTqdvI~RIq~Lea~G~LTGViD----D-RGKFIYIS~EEm~aVA~fI~qrG 215 (251)
++++..-+-.-+..|+++|-|+...+ + +=||..||+.-.+.+..+...-.
T Consensus 43 ~~i~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~~~~ 97 (116)
T 3f8b_A 43 MELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEIGHENMRLAFESWS 97 (116)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEECHHHHHHHHHHHHHHH
Confidence 48999999999999999999999864 2 33566699999998888775443
No 334
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=27.49 E-value=14 Score=31.34 Aligned_cols=42 Identities=24% Similarity=0.150 Sum_probs=4.3
Q ss_pred CccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceE
Q 025511 155 KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYI 197 (251)
Q Consensus 155 KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFI 197 (251)
++-...+||.+||++..-|..-++.|+++|.|.-+ --+|.||
T Consensus 39 ~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~-~g~G~~V 80 (247)
T 2ra5_A 39 LLGNEIELAARLGLSRPTVRQAIQSLVDKGLLVRR-RGVGTQV 80 (247)
T ss_dssp -----------------------------CEEEEE-C------
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE-cCceeEE
Confidence 34467899999999999999999999999987643 3355555
No 335
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=27.46 E-value=45 Score=26.46 Aligned_cols=43 Identities=21% Similarity=0.291 Sum_probs=30.5
Q ss_pred EcHHHHHHHHHHHHhcCC----ccHHHHHhhcccccccccccchhhh
Q 025511 199 ISQAEMKAVADYIKRQGR----VSISHLASKSNQFIDLETKAQFVED 241 (251)
Q Consensus 199 IS~EEm~aVA~fI~qrGR----VSisELa~~sN~lI~L~p~~~~~~~ 241 (251)
+|++|+.+||.-+..+|. |+-.++...-.++.+=.|..+|.+.
T Consensus 44 Ltddev~~Va~~L~~~~~~~~pi~~~dI~~~It~vT~~~P~~eDi~R 90 (107)
T 3ol3_A 44 LTEDEVVRAAQAILRSTDGQSPVTDDDIRNAVHQIIEKEPTAEEINQ 90 (107)
T ss_dssp CCHHHHHHHHHHHHHHCCSSSCBCHHHHHHHHHHHHSSCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHhcCCcCHHHHHH
Confidence 677777777777777766 6666777777777777777766644
No 336
>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli}
Probab=27.38 E-value=1.1e+02 Score=25.29 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=41.0
Q ss_pred CCChHHHHHHHHHHHhcCC-cceeeeCCCc-eEEEcHHHHHHHHHHHHhcC
Q 025511 167 KLRTQECINRITSLENMGR-LSGVMDDRGK-YIYISQAEMKAVADYIKRQG 215 (251)
Q Consensus 167 gLrTqdvI~RIq~Lea~G~-LTGViDDRGK-FIYIS~EEm~aVA~fI~qrG 215 (251)
||.++|+-.-+..|.++|- +.=-+++.|. =|+|..+.+...---+...|
T Consensus 8 ~L~~~da~~i~~~L~~~gI~~~y~~~~~g~~~I~Vp~~~~~~ar~~La~~G 58 (171)
T 1yj7_A 8 GLTEKEANQMQALLLSNDVNVSKEMDKSGNMTLSVAAADFVRAITILNNNG 58 (171)
T ss_dssp EECHHHHHHHHHHHHHTTCCCEEEECTTSCEEEEEEGGGHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHcCCCCceEECCCCCEEEEeCHHHHHHHHHHHHHcC
Confidence 5788999999999999985 5667788888 49999999998888888776
No 337
>2zxj_A Transcriptional regulatory protein WALR; two-component system, YYCG, response regulator, helix-turn-H motif, DNA-binding domain; 1.87A {Staphylococcus aureus} PDB: 2d1v_A
Probab=27.16 E-value=43 Score=25.87 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=30.1
Q ss_pred CCceEEEcHHHHHHHHHHHHhcCCc-cHHHHHhhc
Q 025511 193 RGKYIYISQAEMKAVADYIKRQGRV-SISHLASKS 226 (251)
Q Consensus 193 RGKFIYIS~EEm~aVA~fI~qrGRV-SisELa~~s 226 (251)
.|+-|-+|+.|+.-+.-+++..|+| |..+|....
T Consensus 31 ~g~~i~Lt~~E~~lL~~L~~~~g~vvsre~L~~~v 65 (120)
T 2zxj_A 31 RGEDIELTHREFELFHYLSKHMGQVMTREHLLQTV 65 (120)
T ss_dssp TTEEECCCHHHHHHHHHHHTTTTCCBCHHHHHHHH
T ss_pred CCEEEEcCHHHHHHHHHHHhCCCceEcHHHHHHHh
Confidence 5999999999999999999999997 667887764
No 338
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=26.96 E-value=13 Score=32.38 Aligned_cols=50 Identities=18% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHHHHHHHHhc---CccchHhHHhHc-CCChHHHHHHHHHHHhcCCcceeeeCC
Q 025511 144 LADFVEYIKKH---KCIPLEDLAAEF-KLRTQECINRITSLENMGRLSGVMDDR 193 (251)
Q Consensus 144 L~~FI~YIK~~---KVV~LEDLAa~F-gLrTqdvI~RIq~Lea~G~LTGViDDR 193 (251)
-+..+++|+.. .=|++++|++.+ +++..++.+-|..|..+|.|--=+||.
T Consensus 209 ~~~Vl~~i~~~~~~~Gi~~~~I~~~l~~~~~~~v~~al~~L~~eG~IYsTiDd~ 262 (270)
T 2pi2_A 209 QNQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVDDD 262 (270)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHhCCCccCCCHHHHHHHhcCCCHHHHHHHHHHHHhCCEEecccccc
Confidence 35577778776 577888999999 799999999999999999987767763
No 339
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=26.90 E-value=1.1e+02 Score=21.74 Aligned_cols=49 Identities=16% Similarity=0.298 Sum_probs=37.4
Q ss_pred HhcCccchHhHHhHcCCChHHHHHHHHHHHhcC--CcceeeeCCCceEEEcHHHHHH
Q 025511 152 KKHKCIPLEDLAAEFKLRTQECINRITSLENMG--RLSGVMDDRGKYIYISQAEMKA 206 (251)
Q Consensus 152 K~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G--~LTGViDDRGKFIYIS~EEm~a 206 (251)
-.+.+..+++.|.-||+.. +.+..|-.+| ....|.+ |+=++|..++++.
T Consensus 12 ~~K~~LTi~EaAeylgIg~----~~l~~L~~~~~~~~~~~~i--G~~~lI~r~~fe~ 62 (70)
T 1y6u_A 12 WERYTLTIEEASKYFRIGE----NKLRRLAEENKNANWLIMN--GNRIQIKRKQFEK 62 (70)
T ss_dssp TTSSEEEHHHHHHHTCSCH----HHHHHHHHHCTTCSSEEEE--TTEEEEESHHHHH
T ss_pred cccceeCHHHHHHHHCcCH----HHHHHHHHcCCCCCcEEEe--CCEEEEEHHHHHH
Confidence 4577899999999999975 4566777776 5556666 7778888877764
No 340
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=26.85 E-value=36 Score=23.86 Aligned_cols=34 Identities=24% Similarity=0.224 Sum_probs=27.6
Q ss_pred HHhcCccchHhHHhHcCCCh----HHHHHHHHHHHhcC
Q 025511 151 IKKHKCIPLEDLAAEFKLRT----QECINRITSLENMG 184 (251)
Q Consensus 151 IK~~KVV~LEDLAa~FgLrT----qdvI~RIq~Lea~G 184 (251)
+..-||.-|-+.....||+| +|.|+||+.....+
T Consensus 10 l~klkV~eLK~~L~~rGL~~~G~KaeLieRL~~~l~~~ 47 (55)
T 2do1_A 10 LHKLKLAELKQECLARGLETKGIKQDLIHRLQAYLEEH 47 (55)
T ss_dssp TTTSCHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHT
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC
Confidence 34567888888888888877 89999999887665
No 341
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DN binding, phosphoprotein, transcription regul; NMR {Helicobacter pylori}
Probab=26.85 E-value=58 Score=24.47 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=30.2
Q ss_pred CCceEEEcHHHHHHHHHHHHhcCC-ccHHHHHhhc
Q 025511 193 RGKYIYISQAEMKAVADYIKRQGR-VSISHLASKS 226 (251)
Q Consensus 193 RGKFIYIS~EEm~aVA~fI~qrGR-VSisELa~~s 226 (251)
.|+-|-+|+.|+.-++-++...|+ ||..+|....
T Consensus 36 ~g~~i~Lt~~E~~LL~~L~~~~g~vvsre~L~~~v 70 (115)
T 2k4j_A 36 HEKKLDLTRAEYEILSLLISKKGYVFSRESIAIES 70 (115)
T ss_dssp TTEEECSCHHHHHHHHHHHHHCCCEECHHHHHHHT
T ss_pred CCEEEecCHHHHHHHHHHHHcCCcEEcHHHHHHHH
Confidence 578899999999999999999997 6778998876
No 342
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=26.79 E-value=2.6e+02 Score=22.85 Aligned_cols=64 Identities=8% Similarity=0.095 Sum_probs=50.3
Q ss_pred HHHHHHhcC--ccchHhHHhHcC-CChHHHHHHHHHHHhcCCcceeeeC-----CC---ceEEEcHHHHHHHHHH
Q 025511 147 FVEYIKKHK--CIPLEDLAAEFK-LRTQECINRITSLENMGRLSGVMDD-----RG---KYIYISQAEMKAVADY 210 (251)
Q Consensus 147 FI~YIK~~K--VV~LEDLAa~Fg-LrTqdvI~RIq~Lea~G~LTGViDD-----RG---KFIYIS~EEm~aVA~f 210 (251)
.+.++..+. ...+++|+..++ |+..-|-..++.|.+.|.|.=+--+ || ||--+|++-...+..|
T Consensus 34 IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l~~y 108 (151)
T 3u1d_A 34 VLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALLRAV 108 (151)
T ss_dssp HHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHHHHh
Confidence 455666664 478899999999 9988888999999999999855322 34 3889999988887663
No 343
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=26.63 E-value=1.7e+02 Score=22.21 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=46.8
Q ss_pred CccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeee-C-CCceEEEcHHHHHHHHHHH
Q 025511 155 KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD-D-RGKYIYISQAEMKAVADYI 211 (251)
Q Consensus 155 KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViD-D-RGKFIYIS~EEm~aVA~fI 211 (251)
.-..+-+||...+++-.-+-.-+..|++.|-+.=..+ | || ++-+|++-...+.+.+
T Consensus 35 ~~~s~~eLa~~l~l~~stLsR~l~rLe~~GLV~r~~~~D~R~-~v~LT~~G~~~l~~~~ 92 (96)
T 2obp_A 35 TPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLADVSVEADGRG-HASLTQEGAALAAQLF 92 (96)
T ss_dssp CCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTSCE-EEEECHHHHHHHHHHC
T ss_pred CCcCHHHHHHHhCCchhhHHHHHHHHHHCCCEEeecCCCCce-eEEECHHHHHHHHHhc
Confidence 4579999999999999999999999999999885544 3 77 5999999888877653
No 344
>2q2f_A Selenoprotein S; anti-parallel coiled-coil, endoplasmic reticulum, membrane, selenocysteine, transmembrane, structural genomics; HET: MSE; 1.50A {Homo sapiens}
Probab=26.54 E-value=1.6e+02 Score=22.84 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=6.3
Q ss_pred HHHHHHHHHHchHHH
Q 025511 76 KQDRYTEMRRRKDEE 90 (251)
Q Consensus 76 ~e~~~ee~rrkkeee 90 (251)
+|++.+.-|++=.++
T Consensus 45 RQEAl~aaRlRMQEe 59 (89)
T 2q2f_A 45 RQEALAAARLKMQEE 59 (89)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444443333
No 345
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=26.43 E-value=1.4e+02 Score=19.45 Aligned_cols=61 Identities=20% Similarity=0.310 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHhcCCccHHHHH
Q 025511 144 LADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVSISHLA 223 (251)
Q Consensus 144 L~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~qrGRVSisELa 223 (251)
+...|..+...+=+...+||...|++ +..|.++. +|+. .+|.+.+.++|.+.. |++.+|.
T Consensus 11 ~~~~l~~~r~~~glsq~~lA~~~gis-~~~i~~~e--------------~g~~-~~~~~~l~~la~~l~----~~~~~l~ 70 (77)
T 2b5a_A 11 FGRTLKKIRTQKGVSQEELADLAGLH-RTYISEVE--------------RGDR-NISLINIHKICAALD----IPASTFF 70 (77)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCC-HHHHHHHH--------------TTCS-CCBHHHHHHHHHHTT----CCHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCCC-HHHHHHHH--------------CCCC-CCCHHHHHHHHHHhC----cCHHHHh
Confidence 34444444555556789999999995 45566654 2333 378899999998874 6777665
Q ss_pred h
Q 025511 224 S 224 (251)
Q Consensus 224 ~ 224 (251)
.
T Consensus 71 ~ 71 (77)
T 2b5a_A 71 R 71 (77)
T ss_dssp H
T ss_pred c
Confidence 4
No 346
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=26.22 E-value=1.5e+02 Score=22.56 Aligned_cols=53 Identities=13% Similarity=0.232 Sum_probs=43.5
Q ss_pred HHHHHHhc--CccchHhHHhHc-----CCChHHHHHHHHHHHhcCCcceeeeCCCceEEE
Q 025511 147 FVEYIKKH--KCIPLEDLAAEF-----KLRTQECINRITSLENMGRLSGVMDDRGKYIYI 199 (251)
Q Consensus 147 FI~YIK~~--KVV~LEDLAa~F-----gLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYI 199 (251)
.++++..+ .-+..+||...+ +++..-|-+-++.|.+.|.|.-+-.+.|+.-|-
T Consensus 23 Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~ 82 (136)
T 1mzb_A 23 ILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHNFDGGHAVFE 82 (136)
T ss_dssp HHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEECSSSSSCEEE
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEE
Confidence 45566544 578889998888 899999999999999999999998777876664
No 347
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=26.15 E-value=2.2e+02 Score=21.69 Aligned_cols=25 Identities=20% Similarity=0.139 Sum_probs=12.5
Q ss_pred HHHHHhhhhhhhhHHhHHhhhhhHH
Q 025511 41 LVCLCTSFLFLLSFSLLFDMFDLKA 65 (251)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~Rea 65 (251)
++|.+..++-.+.|+..+-.+-.--
T Consensus 69 ~~~~~~~~~G~~~~~~~~~~i~~~~ 93 (139)
T 3eff_K 69 LVAVVVMVAGITSFGLVTAALATWF 93 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555566665555443
No 348
>2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn- helix motif, DNA-binding domain, phosphorylation, transcription; 1.87A {Staphylococcus aureus} PDB: 2zxj_A 2d1v_A
Probab=26.08 E-value=45 Score=24.94 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=29.9
Q ss_pred CCceEEEcHHHHHHHHHHHHhcCCc-cHHHHHhhc
Q 025511 193 RGKYIYISQAEMKAVADYIKRQGRV-SISHLASKS 226 (251)
Q Consensus 193 RGKFIYIS~EEm~aVA~fI~qrGRV-SisELa~~s 226 (251)
.|+-|.+|+.|+.-++-++...|+| |..+|....
T Consensus 31 ~g~~i~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~v 65 (120)
T 2z9m_A 31 RGEDIELTHREFELFHYLSKHMGQVMTREHLLQTV 65 (120)
T ss_dssp TTEEECCCHHHHHHHHHHHTTTTCCEEHHHHHHHH
T ss_pred CCEEEeCCHHHHHHHHHHHHCCCceEcHHHHHHHH
Confidence 6888999999999999999999995 678888754
No 349
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=26.05 E-value=2.3e+02 Score=23.23 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=44.8
Q ss_pred chhHHHHHHHHHHhcCccchH----hH--------HhHcC--CChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHH
Q 025511 140 DRDLLADFVEYIKKHKCIPLE----DL--------AAEFK--LRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMK 205 (251)
Q Consensus 140 sq~lL~~FI~YIK~~KVV~LE----DL--------Aa~Fg--LrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~ 205 (251)
..+++.++++++....-.... ++ |..+| |+.+++..-|.+|.+...-.===.-|=.+|.+|.+|++
T Consensus 111 ~~~~l~ell~~l~~~~~~~~~~~~~~~~~~~ACr~AIk~g~~Ls~~Em~~Ll~~L~~~~~p~~CpHGRPt~~~l~~~ele 190 (197)
T 3kdg_A 111 EAELIEEIIQQVLDSKNIDIKKLREEAAIMMSCKGSIKANRHLRNDEIKALLDDLRSTSDPFTCPHGRPIIIHHSTYEME 190 (197)
T ss_dssp HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHCC----CCCCCHHHHHHHHHHHHHSSCTTBCTTSCBCEEEEEHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhHhhccCCCCCCHHHHHHHHHHHHcCCCCCcCCCCCcEEEEeCHHHHH
Confidence 466889999998765433332 22 34554 78899999999998876543222336678889999887
Q ss_pred HH
Q 025511 206 AV 207 (251)
Q Consensus 206 aV 207 (251)
+.
T Consensus 191 k~ 192 (197)
T 3kdg_A 191 KM 192 (197)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 350
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=26.02 E-value=55 Score=22.60 Aligned_cols=28 Identities=11% Similarity=0.227 Sum_probs=14.2
Q ss_pred EcHHHHHHHHHHHHhcCCccHHHHHhhc
Q 025511 199 ISQAEMKAVADYIKRQGRVSISHLASKS 226 (251)
Q Consensus 199 IS~EEm~aVA~fI~qrGRVSisELa~~s 226 (251)
+|+..+..+...+...|.+|.++|++..
T Consensus 19 l~~~~~~~l~~l~~~~~~~t~~ela~~l 46 (109)
T 2d1h_A 19 ITDTDVAVLLKMVEIEKPITSEELADIF 46 (109)
T ss_dssp CCHHHHHHHHHHHHHCSCEEHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3444555554444445555555555543
No 351
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I
Probab=25.94 E-value=44 Score=28.92 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=24.3
Q ss_pred hcCccchHhHHhHcCCChHHHHHHHHH
Q 025511 153 KHKCIPLEDLAAEFKLRTQECINRITS 179 (251)
Q Consensus 153 ~~KVV~LEDLAa~FgLrTqdvI~RIq~ 179 (251)
.+|.+.|.+||.++|-+-+++|.++++
T Consensus 131 ~rk~~~lg~ls~~~Gwk~~~vv~~le~ 157 (198)
T 4a17_I 131 SRPVCKLGDLSASVGWGKQTLIEKLEE 157 (198)
T ss_dssp TSCEEEHHHHHHHTTCTTHHHHHHHHH
T ss_pred CCCeEEHHHHHHHhCchHHHHHHHHHH
Confidence 469999999999999999999988764
No 352
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=25.88 E-value=2.3e+02 Score=22.07 Aligned_cols=53 Identities=11% Similarity=0.126 Sum_probs=42.9
Q ss_pred HHHHHHh-cCccchHhHHhHc-----CCChHHHHHHHHHHHhcCCcceeeeCCCceEEE
Q 025511 147 FVEYIKK-HKCIPLEDLAAEF-----KLRTQECINRITSLENMGRLSGVMDDRGKYIYI 199 (251)
Q Consensus 147 FI~YIK~-~KVV~LEDLAa~F-----gLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYI 199 (251)
.++++.. ..-+..+||...+ +++..-|-.-++.|.+.|.|.-+-.+.|+..|-
T Consensus 32 IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~ 90 (150)
T 2xig_A 32 VVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVLETSKSGRRYE 90 (150)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEETTTEEEEE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEEEeCCCceEEE
Confidence 3444544 3567888888877 899999999999999999999998888887775
No 353
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=25.40 E-value=89 Score=20.54 Aligned_cols=51 Identities=12% Similarity=0.094 Sum_probs=35.6
Q ss_pred hcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHhcCCccHHHHH
Q 025511 153 KHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVSISHLA 223 (251)
Q Consensus 153 ~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~qrGRVSisELa 223 (251)
..+=....+||...|++. ..|.++.. |+. .+|.+.+.++|++.. |++.+|.
T Consensus 18 ~~~glsq~~lA~~~gis~-~~is~~e~--------------g~~-~~~~~~l~~ia~~l~----v~~~~l~ 68 (73)
T 3omt_A 18 AEKGKTNLWLTETLDKNK-TTVSKWCT--------------NDV-QPSLETLFDIAEALN----VDVRELI 68 (73)
T ss_dssp HHHTCCHHHHHHHTTCCH-HHHHHHHT--------------TSS-CCCHHHHHHHHHHHT----SCGGGGB
T ss_pred HHcCCCHHHHHHHHCcCH-HHHHHHHc--------------CCC-CCCHHHHHHHHHHHC----cCHHHHh
Confidence 334456889999999954 55666542 443 279999999999883 6666664
No 354
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=25.38 E-value=1.3e+02 Score=19.27 Aligned_cols=53 Identities=17% Similarity=0.239 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHH
Q 025511 144 LADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIK 212 (251)
Q Consensus 144 L~~FI~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~ 212 (251)
+...+..+...+=+...+||...|++ +..|+++. +|+ -.+|.+.+.++|++..
T Consensus 14 ~~~~l~~~r~~~g~s~~~lA~~~gis-~~~i~~~e--------------~g~-~~~~~~~l~~l~~~l~ 66 (74)
T 1y7y_A 14 FGQRLRELRTAKGLSQETLAFLSGLD-RSYVGGVE--------------RGQ-RNVSLVNILKLATALD 66 (74)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCC-HHHHHHHH--------------TTC-SCCBHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcC-HHHHHHHH--------------CCC-CCCCHHHHHHHHHHhC
Confidence 34445555555667789999999996 45555554 233 2478888888888763
No 355
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_K
Probab=25.29 E-value=45 Score=29.05 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=24.5
Q ss_pred hcCccchHhHHhHcCCChHHHHHHHHH
Q 025511 153 KHKCIPLEDLAAEFKLRTQECINRITS 179 (251)
Q Consensus 153 ~~KVV~LEDLAa~FgLrTqdvI~RIq~ 179 (251)
.+|.+.|.+||.++|-+-+++|.++++
T Consensus 137 ~rk~~~lg~ls~~~Gwk~~~vv~~le~ 163 (206)
T 3iz5_K 137 GHRYCLLGQLSKEVGWNYADTIRELEE 163 (206)
T ss_dssp SSCEEEHHHHGGGTCTTHHHHHHHHHH
T ss_pred CCCeEEHHHHHHHHCchHHHHHHHHHH
Confidence 578999999999999999999988764
No 356
>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer, electron transport; HET: HEC; NMR {Pseudomonas putida}
Probab=25.22 E-value=37 Score=23.88 Aligned_cols=16 Identities=25% Similarity=0.617 Sum_probs=14.7
Q ss_pred EcHHHHHHHHHHHHhc
Q 025511 199 ISQAEMKAVADYIKRQ 214 (251)
Q Consensus 199 IS~EEm~aVA~fI~qr 214 (251)
+|++|+.+|+.||...
T Consensus 81 Ls~~ei~~l~~yl~~~ 96 (110)
T 2l4d_A 81 LGDAEVSALISYLEEE 96 (110)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc
Confidence 8999999999999864
No 357
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=25.16 E-value=40 Score=25.53 Aligned_cols=29 Identities=21% Similarity=0.438 Sum_probs=22.8
Q ss_pred EcHHHHHHHHHHHHhc----CCccHHHHHhhccc
Q 025511 199 ISQAEMKAVADYIKRQ----GRVSISHLASKSNQ 228 (251)
Q Consensus 199 IS~EEm~aVA~fI~qr----GRVSisELa~~sN~ 228 (251)
.|+.| ..||+||..+ ...|+++||+.|+-
T Consensus 19 ls~~e-~~ia~yil~~~~~~~~~si~elA~~~~v 51 (111)
T 2o3f_A 19 LPPSE-RKLADYILAHPHXAIESTVNEISALANS 51 (111)
T ss_dssp SCHHH-HHHHHHHHHCHHHHHTCCHHHHHHHTTC
T ss_pred CCHHH-HHHHHHHHHChHHHHhcCHHHHHHHHCC
Confidence 57766 5699999987 56888999988863
No 358
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}
Probab=24.90 E-value=36 Score=23.48 Aligned_cols=15 Identities=33% Similarity=0.685 Sum_probs=13.9
Q ss_pred EcHHHHHHHHHHHHh
Q 025511 199 ISQAEMKAVADYIKR 213 (251)
Q Consensus 199 IS~EEm~aVA~fI~q 213 (251)
+|++|+.+|+.||+.
T Consensus 83 ls~~ei~~l~~yl~s 97 (99)
T 1w2l_A 83 LSEREVAALIEFIKQ 97 (99)
T ss_dssp CCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHH
Confidence 799999999999975
No 359
>2m0n_A Putative uncharacterized protein; tuberculosis, structural genomics, seattle structural genomi for infectious disease, ssgcid; NMR {Mycobacterium abscessus}
Probab=24.61 E-value=38 Score=27.19 Aligned_cols=44 Identities=14% Similarity=0.163 Sum_probs=37.8
Q ss_pred EcHHHHHHHHHHHHhcCC-------ccHHHHHhhcccccccccccchhhhh
Q 025511 199 ISQAEMKAVADYIKRQGR-------VSISHLASKSNQFIDLETKAQFVEDL 242 (251)
Q Consensus 199 IS~EEm~aVA~fI~qrGR-------VSisELa~~sN~lI~L~p~~~~~~~~ 242 (251)
+|++|+.+||.-+...|. |+-.++.....++.+=.|..+|.+..
T Consensus 41 LtdeEV~~Va~~L~~~~~~~~~~~~i~~~dI~v~It~VT~e~P~peDI~RV 91 (112)
T 2m0n_A 41 LTEEQVQEVVAKLTDPESSAQIDGVVSKDEIEKFIADVTKDEPTAQDISRV 91 (112)
T ss_dssp CCHHHHHHHHHHHTCTTTHHHHTSCCCTTHHHHHHHHTTTCCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccCcccCCCCCCHHHHHHHHHHHhccCcCHHHHHHH
Confidence 799999999999988877 77789999999999999988887543
No 360
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=24.34 E-value=61 Score=21.10 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=14.6
Q ss_pred cCCcceeeeCCCceEEEcHH
Q 025511 183 MGRLSGVMDDRGKYIYISQA 202 (251)
Q Consensus 183 ~G~LTGViDDRGKFIYIS~E 202 (251)
.....-++|..|+++|+++.
T Consensus 22 ~~~~i~~~d~~g~i~~~N~~ 41 (118)
T 3olo_A 22 AVEASFCLGDNWQFLYVNDA 41 (118)
T ss_dssp CSSEEEEECTTSBEEEECHH
T ss_pred CCceEEEECCCCcEEEEHHH
Confidence 33334467899999999974
No 361
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=24.25 E-value=52 Score=24.66 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=28.3
Q ss_pred HHhcCccchHhHHhHcCCCh----HHHHHHHHHHHhcC
Q 025511 151 IKKHKCIPLEDLAAEFKLRT----QECINRITSLENMG 184 (251)
Q Consensus 151 IK~~KVV~LEDLAa~FgLrT----qdvI~RIq~Lea~G 184 (251)
+..-||.-|-+.-...||++ +|+|+||+.-...+
T Consensus 26 l~klkVaeLK~eLk~RGL~~sG~KaeLIeRL~~~~~~~ 63 (75)
T 2kvu_A 26 LDDMKVAELKQELKLRSLPVSGTKTELIERLRAYQDQI 63 (75)
T ss_dssp TTTSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcc
Confidence 35678888999999999987 89999999877654
No 362
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=24.19 E-value=1.4e+02 Score=19.87 Aligned_cols=60 Identities=10% Similarity=0.083 Sum_probs=40.5
Q ss_pred HHHHHhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHhcCCccHHHHHhhcc
Q 025511 148 VEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVSISHLASKSN 227 (251)
Q Consensus 148 I~YIK~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~qrGRVSisELa~~sN 227 (251)
|..+...+=+...+||...|++ +..|+++. +|+. .+|.+.+.++|++.. |++.+|....+
T Consensus 7 lk~~r~~~glsq~~lA~~~gis-~~~i~~~e--------------~g~~-~p~~~~l~~ia~~l~----v~~~~l~~~~~ 66 (77)
T 2k9q_A 7 LKVERIRLSLTAKSVAEEMGIS-RQQLCNIE--------------QSET-APVVVKYIAFLRSKG----VDLNALFDRII 66 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTSC-HHHHHHHH--------------TCCS-CCHHHHHHHHHHHTT----CCHHHHHHHHS
T ss_pred HHHHHHHcCCCHHHHHHHhCCC-HHHHHHHH--------------cCCC-CCCHHHHHHHHHHhC----cCHHHHhCccc
Confidence 4444444445678999999995 45566654 2443 278888999988873 78887765443
No 363
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged helix, osmoregulation; 1.95A {Escherichia coli} SCOP: a.4.6.1 PDB: 1odd_A 2jpb_A
Probab=24.15 E-value=62 Score=23.59 Aligned_cols=34 Identities=9% Similarity=0.177 Sum_probs=29.7
Q ss_pred CCceEEEcHHHHHHHHHHHHhcCC-ccHHHHHhhc
Q 025511 193 RGKYIYISQAEMKAVADYIKRQGR-VSISHLASKS 226 (251)
Q Consensus 193 RGKFIYIS~EEm~aVA~fI~qrGR-VSisELa~~s 226 (251)
.|+=|-+|+.|+.-++-++...|+ ||..+|....
T Consensus 26 ~~~~i~Lt~~E~~lL~~L~~~~g~~vsr~~L~~~v 60 (110)
T 1opc_A 26 EDEPMPLTSGEFAVLKALVSHPREPLSRDKLMNLA 60 (110)
T ss_dssp TTEEECCCHHHHHHHHHHHHSTTCCEEHHHHHHHH
T ss_pred CCEEEEcCHHHHHHHHHHHHcCCceEcHHHHHHHH
Confidence 578899999999999999999997 5678888765
No 364
>2jzy_A Transcriptional regulatory protein PCOR; two-component-system response regulator, effector domain, DNA-binding, phosphoprotein, plasmid; NMR {Klebsiella pneumoniae}
Probab=24.06 E-value=58 Score=24.17 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=29.9
Q ss_pred CCceEEEcHHHHHHHHHHHHhcCC-ccHHHHHhhc
Q 025511 193 RGKYIYISQAEMKAVADYIKRQGR-VSISHLASKS 226 (251)
Q Consensus 193 RGKFIYIS~EEm~aVA~fI~qrGR-VSisELa~~s 226 (251)
.|+=|-+|+.|+.-++-++...|+ ||..+|.+..
T Consensus 23 ~g~~i~Lt~~E~~lL~~L~~~~g~vvsre~L~~~v 57 (112)
T 2jzy_A 23 SGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLV 57 (112)
T ss_dssp TTEECCCCHHHHHHHHHHHHTTTSCBCHHHHHHHH
T ss_pred CCEEEecCHHHHHHHHHHHHCCCceEcHHHHHHHh
Confidence 588899999999999999999998 4678888765
No 365
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=24.00 E-value=20 Score=24.51 Aligned_cols=18 Identities=11% Similarity=0.355 Sum_probs=13.9
Q ss_pred CcceeeeCCCceEEEcHH
Q 025511 185 RLSGVMDDRGKYIYISQA 202 (251)
Q Consensus 185 ~LTGViDDRGKFIYIS~E 202 (251)
.+.-++|..|+|+|+++.
T Consensus 13 d~i~~~d~~g~i~~~n~~ 30 (121)
T 3f1p_B 13 RFISRHNIEGIFTFVDHR 30 (121)
T ss_dssp EEEEEECTTSBEEEECTT
T ss_pred ceEEEECCCceEEEECcc
Confidence 344456889999999985
No 366
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=23.82 E-value=2.7e+02 Score=21.89 Aligned_cols=67 Identities=10% Similarity=0.127 Sum_probs=48.1
Q ss_pred ccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHH--HHHhcCCccHHHHHhhcc
Q 025511 156 CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVAD--YIKRQGRVSISHLASKSN 227 (251)
Q Consensus 156 VV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~--fI~qrGRVSisELa~~sN 227 (251)
...+.++|..+|+++.- |.--+..|.|..+--+.|.|=|-|++.+..+.. +.+.- -+|+.++....+
T Consensus 16 ~~~I~evA~~~gvs~~t----LR~Ye~~Gll~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~-G~sL~eIk~~l~ 84 (148)
T 3gpv_A 16 YYTIGQVAKMQHLTISQ----IRYYDKQGLFPFLQRNEKGDRIFNEEALKYLEMILCLKNT-GMPIQKIKQFID 84 (148)
T ss_dssp CBCHHHHHHHTTCCHHH----HHHHHHTTCCTTCEECTTCCEEBCHHHHHHHHHHHHHHTT-TCCHHHHHHHHH
T ss_pred ceeHHHHHHHHCcCHHH----HHHHHHCCCCCCCcCCCCCCeecCHHHHHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 57799999999997643 556788999986555566777789999987654 33333 478777665443
No 367
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=23.70 E-value=44 Score=24.43 Aligned_cols=31 Identities=16% Similarity=0.326 Sum_probs=25.4
Q ss_pred EEEcHHHHHHHHHHHHhcC---CccHHHHHhhcc
Q 025511 197 IYISQAEMKAVADYIKRQG---RVSISHLASKSN 227 (251)
Q Consensus 197 IYIS~EEm~aVA~fI~qrG---RVSisELa~~sN 227 (251)
+-++.+--..|-.+|++.| ++|..+||+..+
T Consensus 5 ~s~~~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lg 38 (81)
T 1qbj_A 5 LSIYQDQEQRILKFLEELGEGKATTAHDLSGKLG 38 (81)
T ss_dssp -CHHHHHHHHHHHHHHHHCTTCCBCHHHHHHHHT
T ss_pred cccchHHHHHHHHHHHHcCCCCCcCHHHHHHHHC
Confidence 3455666677889999999 999999999887
No 368
>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC; 1.80A {Vibrio parahaemolyticus}
Probab=23.67 E-value=41 Score=23.66 Aligned_cols=15 Identities=20% Similarity=0.468 Sum_probs=14.0
Q ss_pred EcHHHHHHHHHHHHh
Q 025511 199 ISQAEMKAVADYIKR 213 (251)
Q Consensus 199 IS~EEm~aVA~fI~q 213 (251)
+|++|+.+|+.||+.
T Consensus 87 ls~~ei~~l~~yl~~ 101 (103)
T 2zzs_A 87 LSDDDIANLAAYYSS 101 (103)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 899999999999985
No 369
>2dg6_A Putative transcriptional regulator; winged-helix motif, MERR family, gene regulation; 2.20A {Streptomyces coelicolor}
Probab=23.66 E-value=97 Score=26.55 Aligned_cols=66 Identities=14% Similarity=0.073 Sum_probs=42.1
Q ss_pred chHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHhc--CCccHHHHHhhcc
Q 025511 158 PLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQ--GRVSISHLASKSN 227 (251)
Q Consensus 158 ~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~qr--GRVSisELa~~sN 227 (251)
.+.++|..+|+++.- |.-.+..|-|...-.+.|.|=|-|++.+..+..-..-+ +-+|++++.+..+
T Consensus 2 ~IgevA~~~Gvs~~T----LRyYE~~GLl~p~~R~~~gyR~Y~~~dl~~L~~I~~lr~~~G~sL~eIk~~l~ 69 (222)
T 2dg6_A 2 RLADLSKRSGVSTAT----IKYYLREGLLPPGRQVNATTAEYDEDHLRRLRLVRALIQVGKVPVATAREVLG 69 (222)
T ss_dssp CHHHHHHHHTCCHHH----HHHHHHHTSSCCC---------CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHH----HHHHHHCCCCCCCeeCCCCceeeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 467899999997653 55668889999866556677788999999886544443 4688877665543
No 370
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA-binding transcription; 1.90A {Enterococcus faecalis}
Probab=23.59 E-value=1.1e+02 Score=23.17 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=29.7
Q ss_pred CCceEEEcHHHHHHHHHHHHhcCC-ccHHHHHhhc
Q 025511 193 RGKYIYISQAEMKAVADYIKRQGR-VSISHLASKS 226 (251)
Q Consensus 193 RGKFIYIS~EEm~aVA~fI~qrGR-VSisELa~~s 226 (251)
.|+-|-+|+.|+.-++-++...|+ ||..+|....
T Consensus 38 ~g~~i~Lt~~E~~LL~~L~~~~g~vvsre~L~~~v 72 (121)
T 2hwv_A 38 RGEKIELTHREFELLYYLAKHIGQVMTREHLLQTV 72 (121)
T ss_dssp TTEEEECCHHHHHHHHHHHHTTTCCBCHHHHHHHH
T ss_pred CCEEEECCHHHHHHHHHHHHcCCeEEcHHHHHHHH
Confidence 578899999999999999999997 5678888765
No 371
>2hqn_A Putative transcriptional regulator; phosporylation-independent response regulator, signaling Pro; NMR {Helicobacter pylori}
Probab=23.54 E-value=51 Score=23.99 Aligned_cols=34 Identities=12% Similarity=0.279 Sum_probs=30.1
Q ss_pred CCceEEEcHHHHHHHHHHHHhcCC-ccHHHHHhhc
Q 025511 193 RGKYIYISQAEMKAVADYIKRQGR-VSISHLASKS 226 (251)
Q Consensus 193 RGKFIYIS~EEm~aVA~fI~qrGR-VSisELa~~s 226 (251)
.|+-|-+|+.|+.-++-++...|+ ||..+|....
T Consensus 24 ~g~~i~Lt~~E~~lL~~L~~~~g~~vsr~~L~~~v 58 (109)
T 2hqn_A 24 KGREVEVKGKPFEVLTHLARHRDQIVSKEQLLDAI 58 (109)
T ss_dssp TTEEEECCCSTHHHHHHHHHHTCSEEEHHHHHHHH
T ss_pred CCEEEEcCHHHHHHHHHHHHCCCeeEcHHHHHHHH
Confidence 588899999999999999999998 5778888765
No 372
>3vcf_A Probable integrase; catalyzes site-specific integration, recombination; 2.70A {Sulfolobus virus 1} PDB: 4dks_A 3uxu_A
Probab=23.47 E-value=1.2e+02 Score=25.51 Aligned_cols=88 Identities=15% Similarity=0.188 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHHhc--CccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeC--------------CCceEEEcHHH-
Q 025511 141 RDLLADFVEYIKKH--KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDD--------------RGKYIYISQAE- 203 (251)
Q Consensus 141 q~lL~~FI~YIK~~--KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDD--------------RGKFIYIS~EE- 203 (251)
.+-|..|+++++.. ++-.+=-|++.=|+|..+++.-+.+ -+.+ |+|+ ++-|+|.+. +
T Consensus 9 ~eEl~~fl~~~k~~~~~~y~lfrLll~TG~R~gEaLaLl~~---p~~~--v~~~~i~~Y~l~~~~g~K~~~~~f~~~-~l 82 (163)
T 3vcf_A 9 LEEIKRTLQLAKDYSENVYFIYRIALESGVRLSEILKVLKE---PERD--ICGNDVCYYPLSWTRGYKGVFYVFHIT-PL 82 (163)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHS---GGGC--EEETTEEEEEEECCSSSCCEEEEEESS-CC
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhCccHHHHHHHHcC---Ccee--eecCCEEEEEhhhhcCccceEEEEeec-cc
Confidence 45578999999984 4556667999999999999998887 2333 3564 356888864 4
Q ss_pred ------HHHHHHHHHhc-CCccHHHHHhhccc-cccccc
Q 025511 204 ------MKAVADYIKRQ-GRVSISHLASKSNQ-FIDLET 234 (251)
Q Consensus 204 ------m~aVA~fI~qr-GRVSisELa~~sN~-lI~L~p 234 (251)
...|..|.+.. |+|+...|-...++ ++...-
T Consensus 83 ~~~~it~~~v~~~~~~~~~~v~~~~iRk~~~t~m~~~gv 121 (163)
T 3vcf_A 83 KRVEVTKWAIADFERRHKDAIAIKYFRKFVASKMAELSV 121 (163)
T ss_dssp CCCBCCHHHHHHHHHTCTTSCCTHHHHHHHHHHHHHTTC
T ss_pred ccccCCHHHHHHHHHhccCCcCHHHHHHHHHHHHHHcCC
Confidence 35788999987 89999888776554 443433
No 373
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=23.34 E-value=1.7e+02 Score=23.06 Aligned_cols=65 Identities=11% Similarity=0.197 Sum_probs=46.3
Q ss_pred cchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHH--HHHhcCCccHHHHHhhc
Q 025511 157 IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVAD--YIKRQGRVSISHLASKS 226 (251)
Q Consensus 157 V~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~--fI~qrGRVSisELa~~s 226 (251)
..+.++|..+|+++.- |.--+..|.|..+-.+.|.|=|-|++.+..+.. +.+.- -+|+.++....
T Consensus 3 ~~I~e~A~~~gvs~~t----LR~Ye~~GLl~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~-G~sL~eIk~~l 69 (142)
T 3gp4_A 3 LNIKEASEKSGVSADT----IRYYERIGLIPPIHRNESGVRKFGAEDLRWILFTRQMRRA-GLSIEALIDYL 69 (142)
T ss_dssp BCHHHHHHHHTSCHHH----HHHHHHHTSSCCCCBCTTSCBCBCHHHHHHHHHHHHHHHT-TCCHHHHHHHH
T ss_pred CcHHHHHHHHCcCHHH----HHHHHHCCCCCCCcCCCCCCeeeCHHHHHHHHHHHHHHHc-CCCHHHHHHHH
Confidence 3578999999997654 455677799999766677777889999986643 33333 47877776543
No 374
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=23.25 E-value=64 Score=25.95 Aligned_cols=46 Identities=22% Similarity=0.321 Sum_probs=38.3
Q ss_pred cCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEE
Q 025511 154 HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYI 199 (251)
Q Consensus 154 ~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYI 199 (251)
...|...+||..+|++..-+-.-++.|.+.|-|..+--..|=|.--
T Consensus 26 ~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~rG~~GGy~La 71 (162)
T 3k69_A 26 DSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTVGKNGGYQLD 71 (162)
T ss_dssp TSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEECSTTCEEECC
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCeEec
Confidence 4678999999999999999999999999999988775545546543
No 375
>2vml_A Phycocyanin alpha chain; photosynthesis, light-harvesting, electron transport, transp chromophore, bIle pigment, phycobilisome; HET: CYC; 2.40A {Gloeobacter violaceus} PDB: 2vjr_A*
Probab=22.90 E-value=12 Score=30.86 Aligned_cols=39 Identities=18% Similarity=0.501 Sum_probs=28.7
Q ss_pred eCCCceEEEcHHHHHHHHHHHHhc-CCccH-HHHHhhcccccc
Q 025511 191 DDRGKYIYISQAEMKAVADYIKRQ-GRVSI-SHLASKSNQFID 231 (251)
Q Consensus 191 DDRGKFIYIS~EEm~aVA~fI~qr-GRVSi-sELa~~sN~lI~ 231 (251)
|.+|+| +|+.||+++..|+.+- -|++. .-|..+++.|++
T Consensus 13 D~~gRy--ls~~eL~~l~~~~~~~~~Rl~aa~~l~~na~~Iv~ 53 (162)
T 2vml_A 13 DSQGRF--LNNTELQAANGRFQRATASMEAARALTSNADSLVK 53 (162)
T ss_dssp HHTTCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HhcCCC--CCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 778886 7999999999999863 46665 356666665553
No 376
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Probab=22.52 E-value=1.5e+02 Score=25.71 Aligned_cols=9 Identities=33% Similarity=0.457 Sum_probs=4.6
Q ss_pred EcHHHHHHH
Q 025511 199 ISQAEMKAV 207 (251)
Q Consensus 199 IS~EEm~aV 207 (251)
||.+|+..+
T Consensus 139 Is~~El~~~ 147 (323)
T 1ij5_A 139 FSFQDLKQV 147 (323)
T ss_dssp CCHHHHHHH
T ss_pred CcHHHHHHH
Confidence 555555443
No 377
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=22.45 E-value=59 Score=22.38 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=25.6
Q ss_pred HhcCccchHhHHhHcCCCh----HHHHHHHHHHHh
Q 025511 152 KKHKCIPLEDLAAEFKLRT----QECINRITSLEN 182 (251)
Q Consensus 152 K~~KVV~LEDLAa~FgLrT----qdvI~RIq~Lea 182 (251)
..-||.-|-+.....||+| .++|+||+.-..
T Consensus 6 ~kltV~eLK~~Lk~RGL~~~G~KadLieRL~~~~~ 40 (51)
T 1h1j_S 6 SSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKDDE 40 (51)
T ss_dssp GGCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHH
T ss_pred HHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHH
Confidence 4568888999999999987 899999987554
No 378
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=21.83 E-value=1.8e+02 Score=23.11 Aligned_cols=42 Identities=12% Similarity=0.192 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCcc-chHhHHhHcCCC-hHHHHHHHHHHHhcCCc
Q 025511 145 ADFVEYIKKHKCI-PLEDLAAEFKLR-TQECINRITSLENMGRL 186 (251)
Q Consensus 145 ~~FI~YIK~~KVV-~LEDLAa~FgLr-TqdvI~RIq~Lea~G~L 186 (251)
...-.+.+.+.+- ...+||..+|++ ++-+-+.++.|...|.|
T Consensus 13 ~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~~l~~~~~l 56 (202)
T 1jhf_A 13 DLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVI 56 (202)
T ss_dssp HHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHHHHHHCCCc
Confidence 3333444555653 689999999998 45555556677776644
No 379
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=21.64 E-value=2.1e+02 Score=22.13 Aligned_cols=53 Identities=17% Similarity=0.244 Sum_probs=41.9
Q ss_pred HHHHHHhcCccchHhHHhHc-----CCChHHHHHHHHHHHhcCCcceeeeCCCceEEE
Q 025511 147 FVEYIKKHKCIPLEDLAAEF-----KLRTQECINRITSLENMGRLSGVMDDRGKYIYI 199 (251)
Q Consensus 147 FI~YIK~~KVV~LEDLAa~F-----gLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYI 199 (251)
.++++..+.-+..+||...+ +++..-|-+-++.|.+.|.|.-+-.+.|..-|-
T Consensus 24 Il~~l~~~~h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~~~~~~~~Y~ 81 (145)
T 3eyy_A 24 VLEAVDTLEHATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAHLGHGAPTYH 81 (145)
T ss_dssp HHHHHHHHSSBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEECGGGCEEEE
T ss_pred HHHHHHhcCCCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEEeCCCceEEE
Confidence 44555555567777776665 788899999999999999999998888877775
No 380
>1mz4_A Cytochrome C550; PSII associated cytochrome, electron transport; HET: HEM; 1.80A {Thermosynechococcus elongatus} SCOP: a.3.1.1 PDB: 1izl_V* 1s5l_V* 2axt_V* 3a0b_V* 3a0h_V* 3arc_V* 3bz1_V* 3bz2_V* 3kzi_V* 3prq_V* 3prr_V*
Probab=21.63 E-value=46 Score=24.98 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=14.7
Q ss_pred EcHHHHHHHHHHHHhc
Q 025511 199 ISQAEMKAVADYIKRQ 214 (251)
Q Consensus 199 IS~EEm~aVA~fI~qr 214 (251)
+|++|+.+|+.||.+.
T Consensus 107 Lsd~ei~alaaYl~~~ 122 (137)
T 1mz4_A 107 LTEKDLVAIAGHILVE 122 (137)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc
Confidence 8999999999999864
No 381
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=21.46 E-value=1.3e+02 Score=22.85 Aligned_cols=42 Identities=21% Similarity=0.368 Sum_probs=35.3
Q ss_pred HHHHHHHHhc---C-ccchHhHHhHc-CCChHHHHHHHHHHHhcCCc
Q 025511 145 ADFVEYIKKH---K-CIPLEDLAAEF-KLRTQECINRITSLENMGRL 186 (251)
Q Consensus 145 ~~FI~YIK~~---K-VV~LEDLAa~F-gLrTqdvI~RIq~Lea~G~L 186 (251)
+..++|++.+ | =..+.|++..| +.++-+|-.-+++|-.+|.|
T Consensus 6 ~~Ile~l~~k~~~KskfYf~D~~k~~P~~k~r~vKK~~~~LV~Eg~l 52 (78)
T 1ucr_A 6 QKVVDFLNSKSGSKSKFYFNDFTDLFPDMKQREVKKILTALVNDEVL 52 (78)
T ss_dssp HHHHHHHSSHHHHSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHhcccccccchHHHHHHHccccCHHHHHHHHHHHHhcCce
Confidence 4567777543 3 56899999999 99999999999999999987
No 382
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=21.43 E-value=1.4e+02 Score=25.13 Aligned_cols=49 Identities=14% Similarity=0.141 Sum_probs=40.9
Q ss_pred CCChHHHHHHHHHHHhcCCcceeeeC--CC---ceEEEcHHHHHHHHHHHHhcC
Q 025511 167 KLRTQECINRITSLENMGRLSGVMDD--RG---KYIYISQAEMKAVADYIKRQG 215 (251)
Q Consensus 167 gLrTqdvI~RIq~Lea~G~LTGViDD--RG---KFIYIS~EEm~aVA~fI~qrG 215 (251)
+++...+-.-++.|+++|-|+..... .| |+-.||+.-.+.+..++..--
T Consensus 68 ~~s~g~lY~~L~rLe~~GlI~~~~~~~~~~p~rk~Y~iT~~Gr~~l~~~l~~~~ 121 (204)
T 3l9f_A 68 DGTYGMIYPTLRKLEKDGKITKEVVIQDGRPNKNIYAITESGKKELASYLQSDV 121 (204)
T ss_dssp ECCTTCHHHHHHHHHHTTSEEEEEECCTTSCCEEEEEECHHHHHHHHHHHHSCC
T ss_pred CCCcchHHHHHHHHHHCCCeEEEeeccCCCCCceEEEEChHHHHHHHHHHhccc
Confidence 68888899999999999999987642 22 577799999999999998753
No 383
>3dgp_A RNA polymerase II transcription factor B subunit; protein-protein complex, beta-alpha-beta spilt, heterodimer, damage, DNA excision; 1.80A {Saccharomyces cerevisiae}
Probab=21.37 E-value=51 Score=24.75 Aligned_cols=24 Identities=38% Similarity=0.603 Sum_probs=20.6
Q ss_pred eCCCceEEEcHHHHHHHHHHHHhc
Q 025511 191 DDRGKYIYISQAEMKAVADYIKRQ 214 (251)
Q Consensus 191 DDRGKFIYIS~EEm~aVA~fI~qr 214 (251)
|+.-+.++||++-...|..|++++
T Consensus 52 ~~~kr~~~V~~~gh~~vk~f~k~~ 75 (80)
T 3dgp_A 52 DDKKKKFFISKEGNSQVLDFAKRK 75 (80)
T ss_dssp ETTTTEEEEEGGGHHHHHHHHTTC
T ss_pred cCCccEEEEeccchHHHHHHHHHH
Confidence 777888889999999999999765
No 384
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=21.36 E-value=55 Score=19.80 Aligned_cols=15 Identities=7% Similarity=0.202 Sum_probs=12.7
Q ss_pred eeeCCCceEEEcHHH
Q 025511 189 VMDDRGKYIYISQAE 203 (251)
Q Consensus 189 ViDDRGKFIYIS~EE 203 (251)
++|..|+++|+++.=
T Consensus 7 ~~d~~g~i~~~N~~~ 21 (96)
T 3a0s_A 7 TLSKDGRITEWNKKA 21 (96)
T ss_dssp EEETTSBEEEECHHH
T ss_pred EEcCCCCEeehhHHH
Confidence 589999999999753
No 385
>2ciw_A Chloroperoxidase; oxidoreductase, heme, iron, chloride, manganese, pyrrolidone carboxylic acid, glycoprotein, metal-binding; HET: NAG BMA MAN HEM; 1.15A {Caldariomyces fumago} SCOP: a.39.3.1 a.39.3.1 PDB: 1cpo_A* 2civ_A* 2cix_A* 2ciy_A* 2ciz_A* 2cj0_A* 2cj1_A* 2cj2_A* 2cpo_A* 2j18_A* 2j19_A* 2j5m_A*
Probab=21.35 E-value=18 Score=33.18 Aligned_cols=34 Identities=24% Similarity=0.436 Sum_probs=30.4
Q ss_pred HHHHHHH--HHHhcCC-ccHHHHHhhccccccccccc
Q 025511 203 EMKAVAD--YIKRQGR-VSISHLASKSNQFIDLETKA 236 (251)
Q Consensus 203 Em~aVA~--fI~qrGR-VSisELa~~sN~lI~L~p~~ 236 (251)
=|+++|+ ||-+.|| ||..+|...-++..+++|..
T Consensus 32 gLNaLANHGyLpR~G~nit~~~l~~al~~~~n~~~~l 68 (299)
T 2ciw_A 32 ALNALANHGYIPHDGRAISRETLQNAFLNHMGIANSV 68 (299)
T ss_dssp HHHHHHHTTSSCTTCEEECHHHHHHHHHHHHCBCHHH
T ss_pred HHHHHHhcCCcCCCCCccCHHHHHHHHHHhcCCCHHH
Confidence 3789999 9999999 99999999999999888754
No 386
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=21.08 E-value=1.6e+02 Score=18.33 Aligned_cols=52 Identities=25% Similarity=0.360 Sum_probs=34.7
Q ss_pred HhcCccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHHHHHhcCCccHHHHH
Q 025511 152 KKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVSISHLA 223 (251)
Q Consensus 152 K~~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~fI~qrGRVSisELa 223 (251)
...+=+...+||...|++. ..|.++. +|+. .+|.+.+.++|++.. |++.+|.
T Consensus 10 r~~~g~s~~~lA~~~gis~-~~i~~~e--------------~g~~-~~~~~~l~~i~~~l~----~~~~~l~ 61 (66)
T 2xi8_A 10 REKKKISQSELAALLEVSR-QTINGIE--------------KNKY-NPSLQLALKIAYYLN----TPLEDIF 61 (66)
T ss_dssp HHHTTCCHHHHHHHHTSCH-HHHHHHH--------------TTSC-CCCHHHHHHHHHHTT----SCHHHHE
T ss_pred HHHcCCCHHHHHHHHCcCH-HHHHHHH--------------cCCC-CCCHHHHHHHHHHHC----cCHHHHh
Confidence 3344456789999999964 4555553 2332 368888999998873 6666654
No 387
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=20.79 E-value=4e+02 Score=22.80 Aligned_cols=67 Identities=13% Similarity=0.292 Sum_probs=50.4
Q ss_pred ccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHHHHHHH--HHHhcCCccHHHHHhhcc
Q 025511 156 CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVAD--YIKRQGRVSISHLASKSN 227 (251)
Q Consensus 156 VV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm~aVA~--fI~qrGRVSisELa~~sN 227 (251)
...+.++|..+|+++. .|.--+..|.|...-.+.|.|=|-|++++..+.. +.+.-| +|+.++....+
T Consensus 3 ~~tI~evA~~~gvs~~----TLRyYe~~GLL~p~~~~~~GyR~Y~~~dl~~L~~I~~lr~~G-~sL~eIk~~l~ 71 (249)
T 3qao_A 3 AMQIKELAELTGVSVR----TLHHYDKIGLLVPQKDDWNGYRIYSEKDVDKLQQILFFKELD-FPLKKIQQILD 71 (249)
T ss_dssp CBCHHHHHHHHCCCHH----HHHHHHHTTSSCCEECTTTCCEEBCHHHHHHHHHHHHHHHTT-CCHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHH----HHHHHHHCCCCCCceECCCCCeeeCHHHHHHHHHHHHHHHCC-CCHHHHHHHhc
Confidence 3567899999999754 4567788999999986677788889999987754 445445 78877766543
No 388
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=20.74 E-value=53 Score=23.42 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=23.7
Q ss_pred EcHHHHHHHHHHHHhcC---CccHHHHHhhcc
Q 025511 199 ISQAEMKAVADYIKRQG---RVSISHLASKSN 227 (251)
Q Consensus 199 IS~EEm~aVA~fI~qrG---RVSisELa~~sN 227 (251)
+|++-=..|-.++++.| ++|.++||+..+
T Consensus 11 ~~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lg 42 (77)
T 1qgp_A 11 IYQDQEQRILKFLEELGEGKATTAHDLSGKLG 42 (77)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCEEHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHC
Confidence 34444467889999999 999999999877
No 389
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=20.57 E-value=47 Score=22.28 Aligned_cols=17 Identities=12% Similarity=0.120 Sum_probs=13.8
Q ss_pred cceeeeCCCceEEEcHH
Q 025511 186 LSGVMDDRGKYIYISQA 202 (251)
Q Consensus 186 LTGViDDRGKFIYIS~E 202 (251)
+.-++|..|+++|+++.
T Consensus 11 ~i~~~d~~g~i~~~n~~ 27 (117)
T 3f1p_A 11 FLSEHSMDMKFTYCDDR 27 (117)
T ss_dssp EEEEECTTCBEEEECTH
T ss_pred EEEEECCCceEEEECcC
Confidence 34567899999999985
No 390
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=20.39 E-value=85 Score=21.54 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=26.1
Q ss_pred HHhcCccchHhHHhHcCCCh----HHHHHHHHHHHh
Q 025511 151 IKKHKCIPLEDLAAEFKLRT----QECINRITSLEN 182 (251)
Q Consensus 151 IK~~KVV~LEDLAa~FgLrT----qdvI~RIq~Lea 182 (251)
+..-||.-|-+.....||+| .++|+||+.-..
T Consensus 10 ~~klkV~eLK~eLk~RgL~~~G~Ka~Li~RL~~~~~ 45 (50)
T 1zrj_A 10 VRRLKVNELREELQRRGLDTRGLKAELAERLQAALS 45 (50)
T ss_dssp GGGSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHC
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh
Confidence 35678888888889999987 899999987654
No 391
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=20.38 E-value=1.1e+02 Score=21.93 Aligned_cols=31 Identities=16% Similarity=0.153 Sum_probs=27.4
Q ss_pred cCccchHhHHhHcCCChHHHHHHHHHHHhcC
Q 025511 154 HKCIPLEDLAAEFKLRTQECINRITSLENMG 184 (251)
Q Consensus 154 ~KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G 184 (251)
.+-..|++.|...|+..+.+++.|++..++-
T Consensus 38 a~~~tL~~Aa~~~gid~~~ll~~Ln~~~~~~ 68 (73)
T 2k5e_A 38 AQNESLEQGANAHGLNVEDILRDLNALALEH 68 (73)
T ss_dssp GGGSBHHHHHHHTTCCHHHHHHHHHHHHHCC
T ss_pred cccccHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999887653
No 392
>1f1c_A Cytochrome C549; dimeric cytochrome, electron transport; HET: HEM; 2.30A {Arthrospira maxima} SCOP: a.3.1.1
Probab=20.33 E-value=52 Score=23.96 Aligned_cols=18 Identities=39% Similarity=0.442 Sum_probs=15.7
Q ss_pred EEcHHHHHHHHHHHHhcC
Q 025511 198 YISQAEMKAVADYIKRQG 215 (251)
Q Consensus 198 YIS~EEm~aVA~fI~qrG 215 (251)
.+|++|+.+|+.||....
T Consensus 104 ~Ls~~ei~~l~~Yl~~l~ 121 (129)
T 1f1c_A 104 NISEDDLYNVAGYILLQP 121 (129)
T ss_dssp SCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcC
Confidence 489999999999998754
No 393
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=20.21 E-value=78 Score=26.30 Aligned_cols=27 Identities=11% Similarity=0.090 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhcCCccHHHHHhhcc
Q 025511 201 QAEMKAVADYIKRQGRVSISHLASKSN 227 (251)
Q Consensus 201 ~EEm~aVA~fI~qrGRVSisELa~~sN 227 (251)
++=.+.+.+.++++|+|+++||++..|
T Consensus 11 ~eR~~~i~~~l~~~~~~~~~~la~~~~ 37 (190)
T 4a0z_A 11 DKRREAIRQQIDSNPFITDHELSDLFQ 37 (190)
T ss_dssp HHHHHHHHHHHHHCTTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCEeHHHHHHHHC
Confidence 344578899999999999999999887
No 394
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=20.17 E-value=22 Score=28.03 Aligned_cols=41 Identities=22% Similarity=0.339 Sum_probs=0.0
Q ss_pred cchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcH
Q 025511 157 IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQ 201 (251)
Q Consensus 157 V~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~ 201 (251)
+..++||...|++.+-+-.-+++|.++|.|. -.|+.|+|.+
T Consensus 165 ~t~~~lA~~lg~sr~tvsR~l~~L~~~G~I~----~~~~~i~I~d 205 (213)
T 1o5l_A 165 VTLEELSRLFGCARPALSRVFQELEREGYIE----KHGRRIKVLK 205 (213)
T ss_dssp ---------------------------------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCeEE----EcCCEEEEec
Confidence 4578999999998888888889999988754 3344455543
No 395
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=20.12 E-value=1e+02 Score=25.62 Aligned_cols=44 Identities=16% Similarity=0.145 Sum_probs=35.9
Q ss_pred CccchHhHHhHcCCChHHHHHHHHHHHhcCCcceeeeCCCceEEEcHHHH
Q 025511 155 KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEM 204 (251)
Q Consensus 155 KVV~LEDLAa~FgLrTqdvI~RIq~Lea~G~LTGViDDRGKFIYIS~EEm 204 (251)
.++.+.|+|...|++. +++..|..+|.|.+|-.+ +..+|....+
T Consensus 30 ~~LTv~EVAe~LgVs~----srV~~LIr~G~L~AVr~G--r~~rVP~~f~ 73 (148)
T 2kfs_A 30 PTYDLPRVAELLGVPV----SKVAQQLREGHLVAVRRA--GGVVIPQVFF 73 (148)
T ss_dssp CEEEHHHHHHHHTCCH----HHHHHHHHTTSCCCEEET--TEEEEEGGGB
T ss_pred ceEcHHHHHHHhCCCH----HHHHHHHHCCCceEEEEC--CEEEecHHHh
Confidence 7899999999999986 467778899999999984 5666665544
No 396
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=20.08 E-value=56 Score=21.63 Aligned_cols=15 Identities=7% Similarity=0.215 Sum_probs=12.5
Q ss_pred eeeeCCCceEEEcHH
Q 025511 188 GVMDDRGKYIYISQA 202 (251)
Q Consensus 188 GViDDRGKFIYIS~E 202 (251)
=++|..|+++|+++.
T Consensus 33 ~~~d~~g~i~~~N~~ 47 (125)
T 3fc7_A 33 VHLTTNGTILSVNPS 47 (125)
T ss_dssp EEEETTSBEEEECHH
T ss_pred EEEcCCCeEEEECHH
Confidence 346899999999975
Done!