BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025512
(251 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 36/53 (67%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
T LHYAA G KE V LL+ GA V + DG+TP+D+A+ + +++KLLEK
Sbjct: 105 TPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEK 157
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 156 QIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLEN 215
++ +R+ + E+ + + D IE+G A + + T LHYAA G KE V LL+
Sbjct: 3 ELGKRLIEAAENGNKDRVKDLIENG---ADVNASDSDGRTPLHYAAKEGHKEIVKLLISK 59
Query: 216 GAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
GA V ++ DG+TP+ A +++KLL
Sbjct: 60 GADVNAKDSDGRTPLHYAAKEGHKEIVKLL 89
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
T LHYAA G KE V LL+ GA V ++ DG+TP+ A +++KLL
Sbjct: 72 TPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLL 122
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 36/53 (67%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
T LH+AA G KE V LL+ GA V + DG+TP+D+A+ + +V+KLLEK
Sbjct: 105 TPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEK 157
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 156 QIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLEN 215
++ +R+ + E+ + + D IE+G A + + T LH+AA G KE V LL+
Sbjct: 3 ELGKRLIEAAENGNKDRVKDLIENG---ADVNASDSDGRTPLHHAAENGHKEVVKLLISK 59
Query: 216 GAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
GA V ++ DG+TP+ A N +V+KLL
Sbjct: 60 GADVNAKDSDGRTPLHHAAENGHKEVVKLL 89
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
T LH+AA G KE V LL+ GA V ++ DG+TP+ A N +V+KLL
Sbjct: 72 TPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLL 122
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 35/53 (66%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
T LHYAA G KE V LLL GA + DG+TP+D+A+ + +++KLLEK
Sbjct: 105 TPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEK 157
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 7/92 (7%)
Query: 156 QIEERMAKIKEDPSLKPILDEIESGG-PSAMMKYWNDKDN-TALHYAAGYGRKECVALLL 213
++ +R+ + E+ + + D +E+G P+A +D D T LHYAA G KE V LLL
Sbjct: 3 ELGKRLIEAAENGNKDRVKDLLENGADPNA-----SDSDGRTPLHYAAENGHKEIVKLLL 57
Query: 214 ENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
GA ++ DG+TP+ A N +++KLL
Sbjct: 58 SKGADPNAKDSDGRTPLHYAAENGHKEIVKLL 89
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 31/51 (60%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
T LHYAA G KE V LLL GA ++ DG+TP+ A N +++KLL
Sbjct: 72 TPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLL 122
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 34/53 (64%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
T LH AA G KE V LLL GA + DG+TP+D+A+ + +V+KLLEK
Sbjct: 105 TPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEK 157
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 156 QIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLEN 215
++ +R+ + E+ + + D +E+G A + + T LH AA G KE V LLL
Sbjct: 3 ELGKRLIEAAENGNKDRVKDLLENG---ADVNASDSDGKTPLHLAAENGHKEVVKLLLSQ 59
Query: 216 GAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
GA ++ DGKTP+ +A N +V+KLL
Sbjct: 60 GADPNAKDSDGKTPLHLAAENGHKEVVKLL 89
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 33/53 (62%)
Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 246
NT LH AA G E V LLL GA V ++ DG TP +AK N H+++KLL+
Sbjct: 43 NTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLD 95
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 189 WNDKD-NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
W KD NT LH AA G E V LL GA V ++ DG TP+ +A N +++KLL
Sbjct: 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLL 61
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
NTALHYAA Y + +C+ LLL+ A V N G+T +D+A+ + +LLE+
Sbjct: 208 NTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQ 261
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
NTALHYAA Y + +C+ LLL+ A V N G+T +D+A+ + +LLE+
Sbjct: 227 NTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQ 280
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 197 LHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQ 238
LH AA R +CV L L + VTL+N +G+TP+ A LNSQ
Sbjct: 181 LHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQ 222
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 194 NTALHYAAGYGRKECVALLLENGAA-VTLQNMDGKTPIDVAKLNSQHDVLKLL 245
+T LH AA G E V LL NG V Q+ G TP+ A D++KLL
Sbjct: 78 STCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLL 130
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 16/122 (13%)
Query: 144 MMESLTNPTKKDQIEERMAK-----IKEDPSLKPILDEIESGGPSAMMKYW-------ND 191
M+ +L K D+++ER+ + D + L S G + ++++ ND
Sbjct: 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 192 KDNTA---LHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDV-LKLLEK 247
KD+ LH AA GR E V LL GA V N +G TP+ A ++H++ + LLE
Sbjct: 69 KDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 248 DA 249
A
Sbjct: 129 GA 130
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK 234
NT LH A R E L+ GA++ ++N + KTP+ VAK
Sbjct: 173 NTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 193 DNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 233
D TA+H AA G + V +LL A+ +Q+ +G TP+ +A
Sbjct: 139 DATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA 179
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 191 DKDN-TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA 249
DKD T LH AA G E V +LL+ GA V Q+ GKTP D+A N D+ ++L+K A
Sbjct: 98 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQKAA 157
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 191 DKDN-TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
DKD T LH AA G E V +LL+ GA V ++ DG TP+ +A +++++L K
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 191 DKDN-TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
DKD T LH AA G E V +LL+ GA V ++ DG TP+ +A +++++L K
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 200 AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
AA G+ + V +L+ NGA V ++ DG TP+ +A +++++L K
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 56
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
+T LH AA +G E V +LL+NGA V Q+ GKT D++ N D+ ++L+K
Sbjct: 114 HTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA 249
T L AA +G E V +LL+NGA V +M+G TP+ +A + +++++L K+
Sbjct: 82 TPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG 136
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA 249
T LH AA G E V +LL+NGA V + G TP+ +A L +++++L K+
Sbjct: 49 TPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNG 103
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 200 AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA 249
AA GR + V +L+ NGA V ++ G TP+ +A N +++++L K+
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG 70
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 192 KDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK-LNSQH 239
K +TALHY EC+ LLL A++ + N G+TP+D+AK L +H
Sbjct: 204 KGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEH 252
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
T LH AA G E V LLLE GA V ++ +G+TP+ +A N +V+KLL
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
T LH AA G E V LLLE GA V ++ +G+TP+ +A N +V+KLL
Sbjct: 37 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
T LH AA G E V LLLE GA V ++ +G+TP+ +A N +V+KLL
Sbjct: 70 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
T LH AA G E V LLLE GA V ++ +G+TP+ +A N +V+KLL
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
T LH AA G E V LLLE GA V ++ +G+TP+ +A N +V+KLL
Sbjct: 37 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAFL 251
T LH AA G+ E LLL++GA T +N DG TP+D+ K + D+ LL DA L
Sbjct: 110 TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDAAL 165
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 192 KDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
+ +T LH+AAGY R V LL++GA V ++ G P+ A ++V +LL K
Sbjct: 41 RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 96
Score = 33.9 bits (76), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 197 LHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
LH A YG E LL+++GA V + ++ TP+ A ++++ KLL
Sbjct: 79 LHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLL 127
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK 234
NTALH+A G ++LLLE GA V QN+ G++ +D+AK
Sbjct: 178 NTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAK 218
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPI 230
+ +H AA +G VA L+ G V + + +G TP+
Sbjct: 111 SCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPL 146
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAFL 251
T LH AA G+ E LLL++GA T +N DG TP+D+ K + D+ LL DA L
Sbjct: 112 TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDAAL 167
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 192 KDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
+ +T LH+AAGY R V LL++GA V ++ G P+ A ++V +LL K
Sbjct: 43 RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 98
Score = 33.9 bits (76), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 197 LHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
LH A YG E LL+++GA V + ++ TP+ A ++++ KLL
Sbjct: 81 LHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLL 129
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 192 KDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
K NT LH AA Y E V +LL++GA V + DG TP+ +A L +++++L K
Sbjct: 46 KGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLK 101
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
T LH AA +G E V +LL++GA V Q+ GKT D++ N D+ ++L+K
Sbjct: 82 TPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 188 YWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 246
Y ND +T LH AA YG E V +LL++GA V Q+ GKT D++ N D+ ++L+
Sbjct: 109 YDNDG-HTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
T LH AA G E V +LL+NGA V ++ G TP+ +A +++++L K
Sbjct: 49 TPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLK 101
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
T LH AA G E V +LL++GA V + DG TP+ +A +++++L K
Sbjct: 82 TPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLK 134
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 200 AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA 249
AA G+ + V +L+ NGA V + DG TP+ +A N +++++L K+
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNG 70
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 191 DKDN-TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA 249
DKD T LH AA G E V +LL+ GA V Q+ GKTP D+A D+ ++L+K A
Sbjct: 98 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQKAA 157
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 191 DKDN-TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
DKD T LH AA G E V +LL+ GA V ++ DG TP+ +A +++++L K
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 191 DKDN-TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
DKD T LH AA G E V +LL+ GA V ++ DG TP+ +A +++++L K
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 200 AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
AA G+ + V +L+ NGA V ++ DG TP+ +A +++++L K
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 56
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAFL 251
T LH AA G+ E LLL++GA T +N DG TP+D+ K + D+ LL DA L
Sbjct: 114 TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDAAL 169
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 192 KDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
+ +T LH+AAGY R V LL++GA V ++ G P+ A ++V +LL K
Sbjct: 45 RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 100
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 197 LHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
LH A YG E LL+++GA V + ++ TP+ A ++++ KLL
Sbjct: 83 LHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLL 131
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
+D+ +T LH AA G E V +LL++GA V ++ DG TP+ +A N +++++L K
Sbjct: 44 DDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLK 101
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
T LH AA G E V +LL++GA V Q+ GKT D++ N D+ ++L+K
Sbjct: 115 TPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
T LH AA G E V +LL+ GA V Q+ G TP+ +A +++++L K
Sbjct: 82 TPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLK 134
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 190 NDKDNTA---LHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDV-LKLL 245
NDKD+ LH AA GR E V LL GA V N +G TP+ A ++H++ + LL
Sbjct: 68 NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL 127
Query: 246 EKDA 249
E A
Sbjct: 128 EGGA 131
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK 234
NT LH A R E LL+ GA++ ++N + KTP+ VAK
Sbjct: 174 NTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK 214
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 191 DKDN-TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK-LLEKD 248
D+D+ TALH+A G E V LL+ G V ++ G +P+ +A + +++K LL K
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG 97
Query: 249 A 249
A
Sbjct: 98 A 98
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 181 GPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGA 217
G A + N T LHYAA R E +LLE GA
Sbjct: 95 GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 131
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 233
TA+H AA G + + +LL A+ +Q+ +G TP+ +A
Sbjct: 142 TAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA 180
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 190 NDKDNTA---LHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDV-LKLL 245
NDKD+ LH AA GR E V LL GA V N +G TP+ A ++H++ + LL
Sbjct: 67 NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL 126
Query: 246 EKDA 249
E A
Sbjct: 127 EGGA 130
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK 234
NT LH A R E LL+ GA++ ++N + KTP+ VAK
Sbjct: 173 NTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK 213
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 191 DKDN-TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK-LLEKD 248
D+D+ TALH+A G E V LL+ G V ++ G +P+ +A + +++K LL K
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG 96
Query: 249 A 249
A
Sbjct: 97 A 97
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 181 GPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGA 217
G A + N T LHYAA R E +LLE GA
Sbjct: 94 GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 130
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 233
TA+H AA G + + +LL A+ +Q+ +G TP+ +A
Sbjct: 141 TAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA 179
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
T LH AA G E V +LL+NGA V Q+ GKT D++ N D+ ++L+K
Sbjct: 115 TPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA 249
T LH AA +G E V +LL+NGA V ++ G TP+ +A +++++L K+
Sbjct: 49 TPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNG 103
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA 249
T LH AA G E V +LL+NGA V + G TP+ +A +++++L K+
Sbjct: 82 TPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNG 136
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
T LH A YG E V +LL++GA V Q+ GKT D++ N D+ ++L+K
Sbjct: 82 TPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
T LH AA E V +LL+NGA V + G+TP+ + + +++++L K
Sbjct: 49 TPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLK 101
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 31/50 (62%)
Query: 200 AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA 249
AA G+ + V +L+ NGA V ++ G TP+ +A +N +++++L K+
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNG 70
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 16/122 (13%)
Query: 144 MMESLTNPTKKDQIEERMAK-----IKEDPSLKPILDEIESGGPSAMMKYW-------ND 191
M+ +L K D+++ER+ + D + L S G + ++++ ND
Sbjct: 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 192 KDNTA---LHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDV-LKLLEK 247
KD+ LH AA G E V LL GA V N +G TP+ A ++H++ + LLE
Sbjct: 69 KDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 248 DA 249
A
Sbjct: 129 GA 130
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK 234
NT LH A R E L+ GA++ ++N + KTP+ VAK
Sbjct: 173 NTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 193 DNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 233
D TA+H AA G + V +LL A+ +Q+ +G TP+ +A
Sbjct: 139 DATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA 179
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 184 AMMKYWND---KDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNS 237
++KY D +DN T LH AA G E V +LL++GA V Q+ GKT D++ N
Sbjct: 65 VLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 124
Query: 238 QHDVLKLLEK 247
D+ ++L+K
Sbjct: 125 NEDLAEILQK 134
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
T LH AA G E V +LL+ GA V ++ G TP+ +A + +++++L K
Sbjct: 49 TPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLK 101
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
T LH AA +G E V +LL++GA V Q+ GKT D++ N D+ ++L+K
Sbjct: 115 TPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
T LH AA +G E V +LL+NGA V + DG TP+ +A +++++L K
Sbjct: 82 TPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLK 134
Score = 34.3 bits (77), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 190 NDKDNTA---LHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 246
N DNT LH AA G E V +LL++GA V ++ G TP+ +A +++++L
Sbjct: 41 NAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLL 100
Query: 247 KDA 249
K+
Sbjct: 101 KNG 103
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
T LH AA G E V +LLE GA V Q+ GKT D++ N D+ ++L+K
Sbjct: 82 TPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
+D T LH AA G E V +LL++GA V + G+TP+ +A +++++L
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVL 99
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
T LH AA G E V +LLE GA V Q+ GKT D++ N D+ ++L+K
Sbjct: 82 TPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
+D T LH AA G E V +LL++GA V +++ G+TP+ +A +++++L
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVL 99
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
T LH AA G E V +LLE GA V Q+ GKT D++ N D+ ++L+K
Sbjct: 82 TPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 34.7 bits (78), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
+D T LH AA G E V +LL++GA V ++ G+TP+ +A +++++L
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVL 99
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 189 WNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
W D T LH AA G E V +LL++GA V Q+ GKT D++ N D+ ++L+K
Sbjct: 112 WGD---TPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
T LH AA YG E V +LL++GA V ++ G TP+ +A L +++++L K
Sbjct: 49 TPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLK 101
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
+T LH AA G E V +LL++GA V + G TP+ +A + +++++L K
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLK 134
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 189 WNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
W D T LH AA G E V +LL++GA V Q+ GKT D++ N D+ ++L+K
Sbjct: 112 WGD---TPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
T LH AA YG E V +LL++GA V ++ G TP+ +A L +++++L K
Sbjct: 49 TPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLK 101
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
+T LH AA G E V +LL++GA V + G TP+ +A + +++++L K
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLK 134
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
T LH AA G E V +LL++GA V Q+ GKT D++ N D+ ++L+K
Sbjct: 115 TPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA 249
T LH AA +G E V +LL+NGA V + G TP+ +A +V+++L K+
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNG 103
Score = 34.7 bits (78), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
T LH AA G E V +LL+NGA V + +G TP+ +A +++++L K
Sbjct: 82 TPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLK 134
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 136 MQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNT 195
+ DPS + LT KKD++ E A+ + L +L + ++ + + +T
Sbjct: 10 LADPSAKAV---LTGEYKKDELLE-AARSGNEEKLMALLTPLNVNCHAS-----DGRKST 60
Query: 196 ALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
LH AAGY R V LLL++GA V ++ G P+ A ++V +LL K
Sbjct: 61 PLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLK 112
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 177 IESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 233
++ G M W T LH AA R E +LLL +GA TL N GK+ +D+A
Sbjct: 111 LKHGACVNAMDLWQ---FTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMA 164
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 195 TALHYAAGY---GRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
TALH A RK+ LLL GA V +N D TP+ VA + +DV+++L K
Sbjct: 213 TALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHK 268
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 197 LHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
LH A YG E LLL++GA V ++ TP+ A ++ +V LL
Sbjct: 95 LHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLL 143
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 30/52 (57%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 246
T LH AA G E V LLLE GA V Q+ GKT D++ N D+ ++L+
Sbjct: 41 TPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 92
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 200 AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
AA G+ + V +L+ NGA V ++ +G TP+ +A N +V+KLL
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLL 58
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 191 DKDN-TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA 249
DKD T LH AA G E V +LL+ GA V Q+ GKT D++ N D+ ++L+K A
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEILQKAA 91
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 200 AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
AA G+ + V +L+ NGA V ++ DG TP+ +A +++++L K
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 56
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 193 DNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHD-VLKLLEKDA 249
D T LH AA G V LLLEN A L G TP+ +A + VL LLEK+A
Sbjct: 80 DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEA 137
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 192 KDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
K T LH AA YG+ LLLE A +G TP+ VA ++ D++KLL
Sbjct: 145 KGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 197 LHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK---LNSQHDVLKLL 245
LH AA G + V LLL+NGA+ + DG TP+ +AK S DVLK++
Sbjct: 348 LHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVV 399
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 172 PILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPID 231
PI+ + G S + N K T LH AA G E LL+N A V + D +TP+
Sbjct: 28 PIVKNLLQRGASPNVS--NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLH 85
Query: 232 VAKLNSQHDVLKLL 245
A +++KLL
Sbjct: 86 CAARIGHTNMVKLL 99
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA 249
T LH A+ YG + V LL++ A V + G +P+ A D++ LL K+
Sbjct: 313 TPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 367
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 20/39 (51%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 233
T LH AA G E VALLL A L N G TP+ +
Sbjct: 247 TPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLV 285
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK-LLEKDA 249
+T LH AA G E V LLE A+ G TP+ VA + V + LLE+DA
Sbjct: 114 HTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA 170
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 189 WNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
WN T LH AA + E LL+ G + +++ G TP+ +A +++ LL
Sbjct: 210 WNGY--TPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALL 264
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%)
Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 246
+T LH AA G E V LLLE GA V Q+ GKT D++ N D+ ++L+
Sbjct: 58 STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 200 AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
AA G+ + V +L+ NGA V ++ +G TP+ +A N +V+KLL
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLL 76
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 184 AMMKY------WNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNS 237
++KY W++ T LH AA G E V +LL++GA V ++ +G TP+ +A +
Sbjct: 65 VLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDG 124
Query: 238 QHDVLKLLEK 247
+++++L K
Sbjct: 125 HLEIVEVLLK 134
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
T LH AA G E V +LL+ GA V Q+ GKT D++ N D+ ++L+K
Sbjct: 115 TPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
+T LH AA G E V +LL+ GA V + G TP+ +A N +++++L K
Sbjct: 48 HTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLK 101
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK 234
N+ N LHYA +G+ + L+ NGA V++ N G+ P+D AK
Sbjct: 102 NEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAK 146
Score = 34.7 bits (78), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVL-KLLEKD 248
+D + LH+A GR V +L+ GA + + N TP+ +A + D++ KLL+
Sbjct: 36 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 95
Query: 249 A 249
A
Sbjct: 96 A 96
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDV 241
N D+T LH AA +G ++ V LL+ A + N G P+ A Q V
Sbjct: 69 NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQV 120
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
+D T LH AA G E V +LL+ GA V Q+ GKT D++ N D+ ++L+K
Sbjct: 110 DDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEILQK 167
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 33/53 (62%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
T LH AA +G E V +LL+NGA V ++ +G TP+ +A +++++L K
Sbjct: 82 TPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLK 134
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA 249
T LH AA +G E V +LL+NGA V + G TP+ +A +++++L K+
Sbjct: 49 TPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNG 103
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 200 AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA 249
AA GR + V +L+ NGA V ++ G TP+ +A +++++L K+
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNG 70
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK 234
N+ N LHYA +G+ + L+ NGA V++ N G+ P+D AK
Sbjct: 97 NEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAK 141
Score = 33.9 bits (76), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVL-KLLEKD 248
+D + LH+A GR V +L+ GA + + N TP+ +A + D++ KLL+
Sbjct: 31 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 90
Query: 249 A 249
A
Sbjct: 91 A 91
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDV 241
N D+T LH AA +G ++ V LL+ A + N G P+ A Q V
Sbjct: 64 NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQV 115
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 188 YWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
YW +T LH AA G E V +LL+NGA V G+TP+ +A +++++L K
Sbjct: 45 YWG---HTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLK 101
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
T LH AA E V +LL++GA V Q+ GKT D++ N D+ ++L+K
Sbjct: 82 TPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
T LH AA G E V +LL+ GA V Q+ GKT D++ N D+ ++L+K
Sbjct: 115 TPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
+T LH AA YG E V +LL+NGA V + G TP+ +A +++++L K
Sbjct: 81 DTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLK 134
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA 249
+D T LH AA G E V +LL++GA V + G TP+ +A L +++++L K+
Sbjct: 44 DDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNG 103
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 200 AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
AA G+ + V +L+ NGA V ++ GKTP+ +A + +++++L K
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLK 68
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 184 AMMKYWNDKD------NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNS 237
++KY D + +T LH AA G E V +LL+ GA V Q+ GKT D++ N
Sbjct: 98 VLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNG 157
Query: 238 QHDVLKLLE 246
D+ ++L+
Sbjct: 158 NEDLAEILQ 166
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
+T LH AA G E V +LL+NGA V + G TP+ +A +++++L K
Sbjct: 48 DTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLK 101
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
+T LH AA G E V +LL+ GA V + G TP+ +A +++++L K
Sbjct: 81 STPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLK 134
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%)
Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
ND+ TALH A G E V L++ G V + DG TP+ A + V K L
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
T LH AA G E +LL++GA V Q+ GKT D++ N D+ ++L+K
Sbjct: 82 TPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
T L+ A +G E V +LL+NGA V + G TP+ +A ++ ++L K
Sbjct: 49 TPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLK 101
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%)
Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
ND+ TALH A G E V L++ G V + DG TP+ A + V K L
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 191 DKDN-TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 246
DKD T LH AA G E V +LL+ GA V Q+ GKT D++ N D+ ++L+
Sbjct: 110 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 191 DKDN-TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
DKD T LH AA G E V +LL+ GA V ++ DG TP+ +A +++++L K
Sbjct: 44 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 101
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 191 DKDN-TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
DKD T LH AA G E V +LL+ GA V ++ DG TP+ +A +++++L K
Sbjct: 77 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 134
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 200 AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
AA G+ + V +L+ NGA V ++ DG TP+ +A +++++L K
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 68
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 190 NDKD---NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
N KD NT L YA G E VALLL++GA++ N G T + A + V++LL
Sbjct: 146 NKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELL 204
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 246
N+K NTALH A V LLL +GA+V + N +T +D A+ NS+ +++LL+
Sbjct: 182 NNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSK--IMELLQ 236
Score = 34.3 bits (77), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 197 LHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
LH AA +GR + + LLL++GA +N D P+ +A V+K L
Sbjct: 90 LHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCL 138
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 197 LHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
LH A G + V LL++ A +++ G TP+ A H+++ LL
Sbjct: 123 LHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALL 171
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK 234
TALH AAGY R E V L+E GA + +++ G T +++A+
Sbjct: 112 TALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR 151
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDG 226
++ TAL + AG G +CV LL E GA + ++M G
Sbjct: 73 DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG 109
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
T LH AA G E V +LL+ GA V Q+ GKT D++ N D+ ++L+K
Sbjct: 115 TPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
T LH AA G E V +LL+ GA V + G TP+ +A + +++++L K
Sbjct: 82 TPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLK 134
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
+D T LH AA G+ E V +LL+NGA V + G TP+ +A + +++++L K
Sbjct: 36 DDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLK 93
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
T LH AA G E V +LL++GA V + G TP+ +A L+ Q +++++L K
Sbjct: 74 TPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLK 126
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 246
T LH AA G+ E V +LL++GA V Q+ G T D++ Q D+ ++L+
Sbjct: 107 TPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEILQ 158
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 200 AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA 249
AA G+ + V +L+ NGA V + +G TP+ +A N Q +++++L K+
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNG 62
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK 234
TALH AAGY R E V L+E GA + +++ G T +++A+
Sbjct: 113 TALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR 152
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDG 226
++ TAL + AG G +CV LL E GA + ++M G
Sbjct: 74 DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG 110
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 246
TALH+A + +E V LL++ GA V Q+ KT D++ N D+ ++L+
Sbjct: 102 TALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 193 DNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
D T LH AA G V +LL++GA V ++M T + A ++ +V++LL K
Sbjct: 67 DRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIK 121
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA-KLNSQHDVLKLLEKDA 249
T L ++ +G E LLE+GA V +N++G+TP+ VA K V KLLE A
Sbjct: 103 TPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGA 158
Score = 34.3 bits (77), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
T L A+ YGR E V LLE GA ++ +++ G T A++ + +V+K+
Sbjct: 136 TPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD 248
TALH AA Y R + LLE A +Q+ G+TP+ A V ++L ++
Sbjct: 59 TALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 112
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 246
N+++ T L AA G E +LL++ A + + + P D+A+ HD+++LL+
Sbjct: 187 NNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
T LH AA G E V +LL NGA V + +G TP+ +A +++++L K
Sbjct: 37 TPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLK 89
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 185 MMKYWND---KDNTA---LHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQ 238
++KY D KD T L+ AA +G E V +LL++GA V Q+ GKT D++
Sbjct: 87 LLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGN 146
Query: 239 HDVLKLLE 246
D+ ++L+
Sbjct: 147 EDLAEILQ 154
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
T LH AA G E V +LL+ GA V ++ G TP+ +A +++++L K
Sbjct: 70 TPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLK 122
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 185 MMKYWNDKD------NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQ 238
++KY D + +T LH AA G E V +LL+ GA V Q+ GKT D++ N
Sbjct: 99 LLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGN 158
Query: 239 HDVLK 243
D+ K
Sbjct: 159 EDLAK 163
Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 190 NDKDNTAL---HYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 246
N DNT L H AA G E V +LL++GA V ++ G TP+ +A + +++++L
Sbjct: 41 NAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLL 100
Query: 247 K 247
K
Sbjct: 101 K 101
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 185 MMKYWNDKDN------TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQ 238
++K+ D D T LH AA G E V +LL+ GA V +M G TP+ +A
Sbjct: 66 LLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGH 125
Query: 239 HDVLKLLEK 247
+++++L K
Sbjct: 126 LEIVEVLLK 134
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD 248
TALH AA Y R + LLE A +Q+ G+TP+ A V ++L ++
Sbjct: 60 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 113
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%)
Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
N+++ T L AA G E +LL++ A + + + P D+A+ HD+++LL++
Sbjct: 188 NNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 245
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD 248
TALH AA Y R + LLE A +Q+ G+TP+ A V ++L ++
Sbjct: 59 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 112
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 246
N+++ T L AA G E +LL++ A + + + P D+A+ HD+++LL+
Sbjct: 187 NNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 34.3 bits (77), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD 248
TALH AA Y R + LLE A +Q+ G+TP+ A V ++L ++
Sbjct: 27 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 80
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%)
Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
N+++ T L AA G E +LL++ A + + + P D+A+ HD+++LL++
Sbjct: 155 NNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 212
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 33.9 bits (76), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD 248
TALH AA Y R + LLE A +Q+ G+TP+ A V ++L ++
Sbjct: 24 TALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRN 77
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%)
Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
N+K+ T L AA G E +LL++ A + + + P D+A+ HD+++LL++
Sbjct: 152 NNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 209
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
TALH AA G E + LL++ V +++ DG TP+ A + + ++L
Sbjct: 201 TALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
T LH AA +G++E +L+EN + N G+T DVA D+L LE+
Sbjct: 234 TPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA----DEDILGYLEE 282
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 193 DNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
D A G E V LLE GA + N+DG T + A ++ D++K L
Sbjct: 40 DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFL 92
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 197 LHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDV 232
LH AA G + L+ GA V N +G TP+D+
Sbjct: 110 LHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
+DKD T L AA G E LL+N A + + + P DVA HD+++LL++
Sbjct: 181 DDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLDE 238
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 233
+TALH AA G + V LLL GA L+N++ K D A
Sbjct: 141 DTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXA 180
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK 243
++ALH A+G G V L+ +GA +L+N TP+ VA+ D+L+
Sbjct: 184 SSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 233
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 153 KKDQIEERMAKIKEDPS-LKPILDEIESGGPSAM-MKYWNDKDNTALHYAAGYGRKECVA 210
+ Q +A P+ L+ +LD S P + ++ N TALH A +E V
Sbjct: 77 RHGQTAAHLACEHRSPTCLRALLD---SAAPGTLDLEARNYDGLTALHVAVNTECQETVQ 133
Query: 211 LLLENGAAVTLQNM-DGKTPIDVAKLNSQHDVLKLL 245
LLLE GA + ++ G++P+ A N+ +++LL
Sbjct: 134 LLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL 169
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 197 LHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
LH A G CV +LL++GA V D TP+ A ++ D + LL
Sbjct: 96 LHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLL 144
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%)
Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
N+K+ T L AA G E +LL++ A + + + P D+A+ HD+++LL++
Sbjct: 78 NNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 135
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 13/67 (19%)
Query: 192 KDNTALHYAAGYGRKECVALLLENGAAVTLQNMD-------------GKTPIDVAKLNSQ 238
+ ++ALH A +CV LL+ENGA V L+ G+ P+ +A Q
Sbjct: 102 QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 161
Query: 239 HDVLKLL 245
DV+ L
Sbjct: 162 WDVVTYL 168
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 197 LHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
LH A G CV +LL++GA V D TP+ A ++ D + LL
Sbjct: 40 LHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLL 88
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
T LH A +G + V LLL++ A V +P+ A N D++KLL
Sbjct: 45 TPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLL 95
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 139 PSMSHMMESLTNPTKKDQIEER-MAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTAL 197
PS+ +++++ ++P KD + + LK + ++ Y ND + L
Sbjct: 24 PSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQND---SPL 80
Query: 198 HYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD 248
H AA G + V LLL GA+ N+ G P+D S +L L EK+
Sbjct: 81 HDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKN 131
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
T LH A R++ V LLL +GA L+ +G TP +A + +LKL
Sbjct: 61 TPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLF 111
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 13/67 (19%)
Query: 192 KDNTALHYAAGYGRKECVALLLENGAAVTLQNMD-------------GKTPIDVAKLNSQ 238
+ ++ALH A +CV LL+ENGA V L+ G+ P+ +A Q
Sbjct: 89 QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 148
Query: 239 HDVLKLL 245
DV+ L
Sbjct: 149 WDVVTYL 155
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
T + AA GR E V L++ GA+V + T +A+ N+ H+++ + ++
Sbjct: 315 TPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 367
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
T LH A R++ V LLL +GA L+ +G TP +A + +LKL
Sbjct: 41 TPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLF 91
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 12/67 (17%)
Query: 167 DPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDG 226
D LKP L++I + G T LH A G E L+ENGA+V +++
Sbjct: 93 DRPLKPDLNKITNQGV------------TCLHLAVGKKWFEVSQFLIENGASVRIKDKFN 140
Query: 227 KTPIDVA 233
+ P+ A
Sbjct: 141 QIPLHRA 147
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 12/67 (17%)
Query: 167 DPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDG 226
D LKP L++I + G T LH A G E L+ENGA+V +++
Sbjct: 93 DRPLKPDLNKITNQGV------------TCLHLAVGKKWFEVSQFLIENGASVRIKDKFN 140
Query: 227 KTPIDVA 233
+ P+ A
Sbjct: 141 QIPLHRA 147
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 194 NTALHYAAGYGRKECVALLLENGAA-VTLQNMDGKTPI---DVAKLNSQHDVLKLLE 246
NTALHY+ + V LL++G V QN G +PI +A L +Q D+ +L+
Sbjct: 112 NTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQ 168
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
TAL A +GR + V LL A V +Q+ DG T + A + ++ LL
Sbjct: 185 TALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLL 235
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 190 NDKDNTALHYAAGYGRKECVALLLEN-GAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
+D +TAL A +G KE LLL ++L + DG T + VA Q ++ +L
Sbjct: 213 DDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASML 269
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 12/67 (17%)
Query: 167 DPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDG 226
D LKP L++I + G T LH A G E L+ENGA+V +++
Sbjct: 93 DRPLKPDLNKITNQGV------------TCLHLAVGKKWFEVSQFLIENGASVRIKDKFN 140
Query: 227 KTPIDVA 233
+ P+ A
Sbjct: 141 QIPLHRA 147
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 21/87 (24%)
Query: 178 ESGGPSAMMK------YWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMD------ 225
+SG P ++ Y+ + ++ALH A +CV LL+ENGA V +
Sbjct: 76 DSGNPQPLVNAQCTDDYY--RGHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKG 133
Query: 226 -------GKTPIDVAKLNSQHDVLKLL 245
G+ P+ +A Q DV+ L
Sbjct: 134 QGTCFYFGELPLSLAACTKQWDVVSYL 160
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 189 WNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 246
WN T L YA +CV LL GA +T + G TP+D+A V +++E
Sbjct: 100 WNG--GTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIE 155
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 189 WNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 246
WN T L YA +CV LL GA +T + G TP+D+A V +++E
Sbjct: 100 WNG--GTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIE 155
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 186 MKYWNDKDNTALHYAAGYGR-----KECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHD 240
+ + ND TAL A G ++ V LL+ENGA ++++ G+T +D A +
Sbjct: 133 IDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTE 192
Query: 241 VLKLL 245
+ K+L
Sbjct: 193 ISKIL 197
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 171 KPILDEIESGGPSAMMKYW---NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGK 227
+P LD + G SA +Y ND TALH AA G V L GA V + G
Sbjct: 22 EPFLDFLL--GFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGH 79
Query: 228 TPIDVAKLNSQHDVLKLL 245
T + +A H +L
Sbjct: 80 TALHLACRVRAHTCACVL 97
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 171 KPILDEIESGGPSAMMKYW---NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGK 227
+P LD + G SA +Y ND TALH AA G V L GA V + G
Sbjct: 22 EPFLDFLL--GFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGH 79
Query: 228 TPIDVAKLNSQHDVLKLL 245
T + +A H +L
Sbjct: 80 TALHLACRVRAHTCACVL 97
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 233
+D++ +H AA G+ + V L+E G + T+QN G T + +A
Sbjct: 17 DDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLA 60
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 181 GPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMD------GK--TPIDV 232
GPSA + YWN+++ + + + R L NG V D G+ +P++V
Sbjct: 385 GPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEV 444
Query: 233 AKLNSQHDVL 242
+ QHD +
Sbjct: 445 EMVLVQHDAV 454
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 197 LHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKL 235
L +AA G +E V LL+E+GA + Q+ G T + + L
Sbjct: 125 LSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILIL 163
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 189 WNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 246
WN T L YA +CV +LLE+GA T++ G +D+A V +++E
Sbjct: 116 WNG--GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 171
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 189 WNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 246
WN T L YA +CV +LLE+GA T++ G +D+A V +++E
Sbjct: 100 WNG--GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 155
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 56/128 (43%), Gaps = 22/128 (17%)
Query: 111 YYSTMQQVMQ--NPQFMT----------MAERLGNALMQDPSMSHMMESLTNPTKKD--- 155
+ T QVM+ NP+ + +R GNA++ D + + +++L +
Sbjct: 37 FGRTALQVMKLGNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 156 QIEERMAKI-----KEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVA 210
IE+ + ++ L+ + E ++ + + N K +TA A YGR E V+
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVV--EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS 154
Query: 211 LLLENGAA 218
L+ NGA
Sbjct: 155 LMQANGAG 162
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 189 WNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 246
WN T L YA +CV +LLE+GA T++ G +D+A V +++E
Sbjct: 98 WNG--GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 153
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 186 MKYWNDKDNTALHYAAGYGRKECVALLLENGAA 218
+ + N K +TA A YGR E V+L+ NGA
Sbjct: 130 VGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 186 MKYWNDKDNTALHYAAGYGRKECVALLLENGAA 218
+ + N K +TA A YGR E V+L+ NGA
Sbjct: 130 VGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 186 MKYWNDKDNTALHYAAGYGRKECVALLLENGAA 218
+ + N K +TA A YGR E V+L+ NGA
Sbjct: 130 VGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 186 MKYWNDKDNTALHYAAGYGRKECVALLLENGAA 218
+ + N K +TA A YGR E V+L+ NGA
Sbjct: 130 VGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
>pdb|3C5I|A Chain A, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
pdb|3C5I|B Chain B, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
pdb|3C5I|C Chain C, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
pdb|3C5I|D Chain D, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
Length = 369
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
Query: 61 MSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQ 120
+SGL N L E+ A + +NS+ ++ ++G + +E + Y TM +
Sbjct: 42 LSGLTNQLFEVGLKEETANN--YNSIRTRVLFRIYGKHVDELYNTISEFEVYKTMSKYKI 99
Query: 121 NPQFMTMAE--RLGNALMQDPSMSHMMESLTNPT 152
PQ + R+ L DP ++ L NPT
Sbjct: 100 APQLLNTFNGGRIEEWLYGDPL---RIDDLKNPT 130
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 160 RMAKIKEDPSLK-PILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAA 218
+A I E+ +L ++ +++ G A + + N+ T LH A + E LL G
Sbjct: 13 HLAIIHEEKALTMEVIRQVK--GDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD 70
Query: 219 VTLQNMDGKTPIDVA 233
L++ G TP+ +A
Sbjct: 71 PELRDFRGNTPLHLA 85
>pdb|3OPU|A Chain A, Crystal Structure Of The C-Terminal Domain Of
Streptococcus Mutans Surface Protein Spap
pdb|3OPU|B Chain B, Crystal Structure Of The C-Terminal Domain Of
Streptococcus Mutans Surface Protein Spap
pdb|3OPU|C Chain C, Crystal Structure Of The C-Terminal Domain Of
Streptococcus Mutans Surface Protein Spap
pdb|3OPU|D Chain D, Crystal Structure Of The C-Terminal Domain Of
Streptococcus Mutans Surface Protein Spap
pdb|3OPU|E Chain E, Crystal Structure Of The C-Terminal Domain Of
Streptococcus Mutans Surface Protein Spap
pdb|3OPU|F Chain F, Crystal Structure Of The C-Terminal Domain Of
Streptococcus Mutans Surface Protein Spap
Length = 339
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 188 YWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
+++D D T HY Y V ++L+NG V +++ T A++++ + + K
Sbjct: 231 FYDDYDQTGDHYTGQYKVFAKVDIILKNG--VIIKSGTELTQYTTAEVDTTKGAITIKFK 288
Query: 248 DAFL 251
+AFL
Sbjct: 289 EAFL 292
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 160 RMAKIKEDPSLK-PILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAA 218
+A I E+ +L ++ +++ G A + + N+ T LH A + E LL G
Sbjct: 10 HLAIIHEEKALTMEVIRQVK--GDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD 67
Query: 219 VTLQNMDGKTPIDVA 233
L++ G TP+ +A
Sbjct: 68 PELRDFRGNTPLHLA 82
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 197 LHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
L AA GR E V LLE GA N G+ PI V + S V +LL
Sbjct: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVMMMGSAR-VAELL 63
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 197 LHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
L AA GR E V LLE GA N G+ PI V + S V +LL
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSAR-VAELL 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.126 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,548,330
Number of Sequences: 62578
Number of extensions: 230468
Number of successful extensions: 968
Number of sequences better than 100.0: 127
Number of HSP's better than 100.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 644
Number of HSP's gapped (non-prelim): 325
length of query: 251
length of database: 14,973,337
effective HSP length: 96
effective length of query: 155
effective length of database: 8,965,849
effective search space: 1389706595
effective search space used: 1389706595
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.9 bits)