BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025513
(251 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 194 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLC 247
IL +P S DD+K A+R AL+WHPDK+ ++ AE+KFK AY+ L
Sbjct: 7 ILDVPRSA--SADDIKKAYRRKALQWHPDKNP-DNKEFAEKKFKEVAEAYEVLS 57
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 194 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 246
+LG+ S +D+K A+R AL+WHPDK+ + + AE+KFKL AY+ L
Sbjct: 14 VLGVQASA--SPEDIKKAYRKLALRWHPDKNPDNKEE-AEKKFKLVSEAYEVL 63
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 194 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLC 247
ILG+ + + +++ A++ A+K+HPD++QG + AE KFK AY+ L
Sbjct: 8 ILGVSKTAEER--EIRKAYKRLAMKYHPDRNQGDKE--AEAKFKEIKEAYEVLT 57
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 194 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLC 247
ILG+ + + +++ A++ A+K+HPD++QG + AE KFK AY+ L
Sbjct: 8 ILGVSKTAEER--EIRKAYKRLAMKYHPDRNQGDKE--AEAKFKEIKEAYEVLT 57
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 194 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLC 247
ILG+ + + +++ A++ A+K+HPD++QG + AE KFK AY+ L
Sbjct: 8 ILGVSKTAEER--EIRKAYKRLAMKYHPDRNQGDKE--AEAKFKEIKEAYEVLT 57
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
Query: 206 DDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 246
+++K A+R AL++HPDK++ + AEEKFK AY L
Sbjct: 18 EEIKRAYRRQALRYHPDKNK---EPGAEEKFKEIAEAYDVL 55
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 208 VKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAA 249
+K A+R ALKWHPDK+ ++ AE +FK AY+ L A
Sbjct: 26 IKKAYRKLALKWHPDKNP-ENKEEAERRFKQVAEAYEVLSDA 66
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 194 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAA 249
ILG+P S + +K AF A+K+HPDK++ AE KF+ AY++L A
Sbjct: 12 ILGVPKSASER--QIKKAFHKLAMKYHPDKNKSPD---AEAKFREIAEAYETLSDA 62
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 206 DDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAA 249
DD+K ++R ALK+HPDK+ + +A +KFK NA+ L A
Sbjct: 32 DDIKKSYRKLALKYHPDKNPDNPEAA--DKFKEINNAHAILTDA 73
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 34.3 bits (77), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
Query: 194 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 246
+LG+ PS ++K +R +ALK+HPDK G + EKFK A++ L
Sbjct: 13 LLGVSPSA--NEQELKKGYRKAALKYHPDKPTGDT-----EKFKEISEAFEIL 58
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 193 TILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLC 247
I+G+ P+ LK +K A+R A K+HPD S + AE +FK A++ L
Sbjct: 9 AIMGVKPTDDLKT--IKTAYRRLARKYHPD---VSKEPDAEARFKEVAEAWEVLS 58
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 206 DDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLC 247
+D+K A+R ALK+HPDK+ A E FK AY L
Sbjct: 22 EDLKKAYRRLALKFHPDKNHAPG---ATEAFKAIGTAYAVLS 60
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Query: 194 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLC 247
+LG+ P +++K A+R ALK+HPDK+ + E+FK AY+ L
Sbjct: 13 VLGVKPDA--SDNELKKAYRKMALKFHPDKNPDGA-----EQFKQISQAYEVLS 59
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 193 TILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 246
ILG+ P+ LK +K A+R A K+HPD S + AE KFK A++ L
Sbjct: 32 AILGVQPTDDLK--TIKTAYRRLARKYHPDV---SKENDAEAKFKDLAEAWEVL 80
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 187 GSSSDR-TILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKS 245
GSS D ILG+P + K ++K A+ A K+HPD ++ + A+EKF AY+
Sbjct: 4 GSSGDYYQILGVPRNASQK--EIKKAYYQLAKKYHPDTNKDDPK--AKEKFSQLAEAYEV 59
Query: 246 LC 247
L
Sbjct: 60 LS 61
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 30.8 bits (68), Expect = 0.83, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 194 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAA 249
+LG+ P+ +++K A+R ALK+HPDK+ EKFK AY+ L A
Sbjct: 11 VLGVKPNA--TQEELKKAYRKLALKYHPDKNPNEG-----EKFKQISQAYEVLSDA 59
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 211 AFRLSALKWHPDKHQGSSQ-AMAEEKFKLCLNAYKSL 246
A+R A K HPD+ + + +AEE+F++ AY++L
Sbjct: 36 AYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETL 72
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 207 DVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLC 247
D+K A++ A +WHPDK++ AE++F AY+ L
Sbjct: 33 DIKKAYKKLAREWHPDKNK---DPGAEDRFIQISKAYEILS 70
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 184 CTVGSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAY 243
C+ ++ +LG+P + +K A+ +HPD++ GS++A E+F AY
Sbjct: 12 CSYSRTALYDLLGVPSTATQA--QIKAAYYRQCFLYHPDRNSGSAEAA--ERFTRISQAY 67
Query: 244 KSLCAA 249
L +A
Sbjct: 68 VVLGSA 73
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras-
Associated Protein Rap1
Length = 90
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 194 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 246
+LG+ P D+V A+R A+ HPDK +E+ FK +NA +L
Sbjct: 32 MLGVKPGA--SRDEVNKAYRKLAVLLHPDKCVAPG---SEDAFKAVVNARTAL 79
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 194 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQG 226
ILG+ + K ++ A+R AL+WHPD Q
Sbjct: 387 ILGVKRNA--KKQEIIKAYRKLALQWHPDNFQN 417
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 194 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQG 226
ILG+ + K ++ A+R AL+WHPD Q
Sbjct: 387 ILGVKRNA--KKQEIIKAYRKLALQWHPDNFQN 417
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,323,786
Number of Sequences: 62578
Number of extensions: 281525
Number of successful extensions: 635
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 618
Number of HSP's gapped (non-prelim): 29
length of query: 251
length of database: 14,973,337
effective HSP length: 96
effective length of query: 155
effective length of database: 8,965,849
effective search space: 1389706595
effective search space used: 1389706595
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)