BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025514
(251 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O74545|YCV6_SCHPO Putative hydrolase C777.06c OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPCC777.06c PE=4 SV=1
Length = 301
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 104/193 (53%), Gaps = 20/193 (10%)
Query: 67 GLDDLRDWT-NNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EE 124
G+DDLR+WT +Q + IY+ R ++V++++ Y+V+ G +V F++ ++
Sbjct: 107 GMDDLREWTLGFLQPSVKIYLTERTYKVIERSFPYMVNAKNATGGGSVPTFDFHVFSPDK 166
Query: 125 PFTVQDLKI--TPLPVWHGA---------GYRSLGFRFGNICYISDVSEIPEETYPFLQD 173
PF + D+ I TPLPV HG Y +GFR G++ YISD + +P T ++
Sbjct: 167 PFKLDDIDISVTPLPVHHGVYFIEGKESQTYFCMGFRVGDMSYISDCNYVPPTTKKLMEG 226
Query: 174 CEILIMDALRPDRSSSTHFGLPRALEEVRKIQ--PKRTLFIGMMHLMDHEKVNEELLKLM 231
++++DAL+ + S HF +A E + ++ P R L+ G H ++H + +EL L
Sbjct: 227 SNVVVVDALKHEPYPS-HFSFKQAEEFIASLEHVPSRVLYTGFSHKVEHNETVKELSVLK 285
Query: 232 ETEGLDVQLSYDG 244
+ + +YDG
Sbjct: 286 ----VPTEPAYDG 294
>sp|Q7MUY1|LIPB_PORGI Octanoyltransferase OS=Porphyromonas gingivalis (strain ATCC
BAA-308 / W83) GN=lipB PE=3 SV=1
Length = 492
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 110/247 (44%), Gaps = 30/247 (12%)
Query: 17 CFAPCRRQISVYTSQISLPTSGFFPFKRILQACLQSSFSTIALFVGFLPM---------- 66
C + R TS + + +G KRIL C F ALF G +
Sbjct: 24 CRSEDRHDKRTRTSLLIITDAG----KRILIDC-SPDFRQQALFAGIDSLDAVLLTHEHF 78
Query: 67 ----GLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID 122
GLDDLR T R + +Y + ++ +Y+ + PG + +L +
Sbjct: 79 DHVGGLDDLR--TICWHRELAVYAEQNVLDSIRDRLHYVFRKNPY-PGTPLLKL-CEVKP 134
Query: 123 EEPFTVQDLKITPLPVWHGAGYRSLGFRFGNICYISDVSEIPEETYPFLQDCEILIMDAL 182
+ PF V DL + PL + HG LG++ G + +++D+ +I E L+ C +L ++ L
Sbjct: 135 DMPFQVADLTVEPLRIMHGR-LPILGYKIGEMAFLTDMKDIAAEEIECLKSCRLLFINGL 193
Query: 183 RPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSY 242
R + +H + +A++ + +I ++ I HL H +++E L+++ + Y
Sbjct: 194 RYRKEHPSHQTIEQAIDTIGQIGNPESVLI---HLSHHAPLHQEHLEILPPH---IHSGY 247
Query: 243 DGLRVPV 249
DGL +
Sbjct: 248 DGLEAII 254
>sp|P16692|PHNP_ECOLI Protein PhnP OS=Escherichia coli (strain K12) GN=phnP PE=1 SV=1
Length = 252
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 18/136 (13%)
Query: 124 EPFTV---QDLKITPLPVWHGA---GYRSLGFRFGNICYISDVSEIPEETYPFLQDC--E 175
EPF V Q L++TPLP+ H GY L + ++SD + +PE+T FL++ +
Sbjct: 124 EPFVVFDLQGLQVTPLPLNHSKLTFGYL-LETAHSRVAWLSDTAGLPEKTLKFLRNNQPQ 182
Query: 176 ILIMDALRPDRSSS--THFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMET 233
+++MD P R+ + H L L + I+ R + + H D + L E
Sbjct: 183 VMVMDCSHPPRADAPRNHCDLNTVLALNQVIRSPRVILTHISHQFDAWLMENALPSGFE- 241
Query: 234 EGLDVQLSYDGLRVPV 249
+ +DG+ + V
Sbjct: 242 ------VGFDGMEIGV 251
>sp|Q0C639|HIS4_HYPNA 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide isomerase OS=Hyphomonas
neptunium (strain ATCC 15444) GN=hisA PE=3 SV=1
Length = 241
Score = 34.3 bits (77), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 89 RDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVWHGAGYRS 146
R F M TH ++VD +G GA V+ I LK TP PV G G R+
Sbjct: 39 RAFHAMGFTHLHVVDLNGAFAGAPVNRAAVEGI---------LKATPAPVQLGGGIRT 87
>sp|Q9M9Q6|SCP50_ARATH Serine carboxypeptidase-like 50 OS=Arabidopsis thaliana GN=SCPL50
PE=2 SV=1
Length = 444
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 166 ETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNE 225
ET F ++C + D LR D S F + ALE + + L+ GM+ L D E
Sbjct: 301 ETVRF-EECSDEVEDVLRADVMKSVKFMVEYALERTQVL-----LYQGMLDLRDGVVSTE 354
Query: 226 ELLKLMETEGL 236
E +K M GL
Sbjct: 355 EWMKTMNWSGL 365
>sp|Q8G5B6|EFG_BIFLO Elongation factor G OS=Bifidobacterium longum (strain NCC 2705)
GN=fusA PE=3 SV=1
Length = 707
Score = 30.8 bits (68), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 69/176 (39%), Gaps = 12/176 (6%)
Query: 13 SSVSCFAPCRRQISVYTSQISL-PTSGFFPFKRILQACLQSSFSTIALFVGFLPMGLDDL 71
++ +CF + + QI++ T G F ++ L+ +A+F G +
Sbjct: 67 AATTCFWSRQSHDTKDKFQINIIDTPGHVDFTAEVERSLRVLDGAVAVFDGKEGVEPQSE 126
Query: 72 RDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFT-VQD 130
W + +P + + + YY VDT GA +Q I E FT V D
Sbjct: 127 TVWRQADKYGVPRICFINKMDKLGANFYYSVDTIKEKLGATPIVMQLPIGSENDFTGVVD 186
Query: 131 LKITPLPVWHGAGYRSLGFRFGNICYISDVSEIPEETYPFLQDC-EILIMDALRPD 185
L VW+G LG ++ D +EIP++ Q+ E L+ A D
Sbjct: 187 LVEMQAYVWNGT--EELGAKY-------DTTEIPDDLKDKAQEYHEKLVEAAAEAD 233
>sp|B3DT30|EFG_BIFLD Elongation factor G OS=Bifidobacterium longum (strain DJO10A)
GN=fusA PE=3 SV=1
Length = 707
Score = 30.8 bits (68), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 69/176 (39%), Gaps = 12/176 (6%)
Query: 13 SSVSCFAPCRRQISVYTSQISL-PTSGFFPFKRILQACLQSSFSTIALFVGFLPMGLDDL 71
++ +CF + + QI++ T G F ++ L+ +A+F G +
Sbjct: 67 AATTCFWSRQSHDTKDKFQINIIDTPGHVDFTAEVERSLRVLDGAVAVFDGKEGVEPQSE 126
Query: 72 RDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFT-VQD 130
W + +P + + + YY VDT GA +Q I E FT V D
Sbjct: 127 TVWRQADKYGVPRICFINKMDKLGANFYYSVDTIKEKLGATPIVMQLPIGSENDFTGVVD 186
Query: 131 LKITPLPVWHGAGYRSLGFRFGNICYISDVSEIPEETYPFLQDC-EILIMDALRPD 185
L VW+G LG ++ D +EIP++ Q+ E L+ A D
Sbjct: 187 LVEMQAYVWNGT--EELGAKY-------DTTEIPDDLKDKAQEYHEKLVEAAAEAD 233
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.140 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,418,713
Number of Sequences: 539616
Number of extensions: 3828618
Number of successful extensions: 11346
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 11335
Number of HSP's gapped (non-prelim): 15
length of query: 251
length of database: 191,569,459
effective HSP length: 115
effective length of query: 136
effective length of database: 129,513,619
effective search space: 17613852184
effective search space used: 17613852184
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)