Query 025514
Match_columns 251
No_of_seqs 147 out of 1273
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 06:37:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025514.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025514hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02649 true_RNase_BN ribonu 100.0 1.5E-34 3.3E-39 256.4 20.8 206 25-249 2-303 (303)
2 PRK02113 putative hydrolase; P 100.0 7.1E-34 1.5E-38 245.6 22.6 192 44-249 34-252 (252)
3 TIGR02651 RNase_Z ribonuclease 100.0 1.1E-33 2.3E-38 250.0 20.6 206 25-249 3-299 (299)
4 COG1234 ElaC Metal-dependent h 100.0 5.4E-32 1.2E-36 238.4 20.1 214 25-250 5-292 (292)
5 PRK05184 pyrroloquinoline quin 100.0 2.8E-30 6E-35 228.8 21.9 192 41-249 35-302 (302)
6 PRK11244 phnP carbon-phosphoru 100.0 4.7E-29 1E-33 215.4 19.8 196 25-249 4-250 (250)
7 TIGR02108 PQQ_syn_pqqB coenzym 100.0 2E-28 4.4E-33 216.6 20.8 189 42-249 35-302 (302)
8 PRK00055 ribonuclease Z; Revie 100.0 2.4E-27 5.3E-32 205.8 17.7 209 25-250 5-267 (270)
9 PRK02126 ribonuclease Z; Provi 100.0 5.7E-27 1.2E-31 209.9 20.3 168 46-219 17-318 (334)
10 TIGR03307 PhnP phosphonate met 100.0 7E-27 1.5E-31 200.4 18.4 178 46-247 28-238 (238)
11 TIGR02650 RNase_Z_T_toga ribon 99.9 5.9E-23 1.3E-27 177.5 13.8 168 43-220 7-250 (277)
12 KOG2121 Predicted metal-depend 99.9 1.7E-23 3.6E-28 196.8 6.8 214 21-249 442-715 (746)
13 PF12706 Lactamase_B_2: Beta-l 99.8 2.5E-18 5.4E-23 141.8 13.7 137 64-214 42-194 (194)
14 PRK00685 metal-dependent hydro 99.8 2.1E-17 4.6E-22 140.3 19.1 173 46-249 9-228 (228)
15 PRK04286 hypothetical protein; 99.8 6.4E-18 1.4E-22 149.6 14.5 198 46-246 16-281 (298)
16 TIGR00649 MG423 conserved hypo 99.6 3.3E-14 7.1E-19 131.7 16.2 158 46-218 15-230 (422)
17 COG1235 PhnP Metal-dependent h 99.5 5.8E-14 1.3E-18 122.6 12.3 85 145-229 158-250 (269)
18 PRK11709 putative L-ascorbate 99.4 1.6E-10 3.4E-15 104.6 20.6 133 80-227 137-300 (355)
19 PF02112 PDEase_II: cAMP phosp 99.2 9.7E-10 2.1E-14 98.3 16.1 165 80-244 109-335 (335)
20 COG0595 mRNA degradation ribon 99.0 1.4E-08 3.1E-13 96.2 15.2 173 24-217 8-237 (555)
21 TIGR03675 arCOG00543 arCOG0054 98.9 3.2E-08 6.8E-13 95.9 14.3 145 46-197 189-387 (630)
22 smart00849 Lactamase_B Metallo 98.8 1.3E-07 2.7E-12 76.4 12.5 145 45-213 6-183 (183)
23 COG5212 PDE1 Low-affinity cAMP 98.7 8.9E-07 1.9E-11 76.0 14.7 170 77-248 137-355 (356)
24 COG1236 YSH1 Predicted exonucl 98.5 1.1E-06 2.5E-11 81.6 12.4 146 46-200 15-204 (427)
25 COG2248 Predicted hydrolase (m 98.3 4.5E-06 9.8E-11 71.0 10.3 119 119-238 135-272 (304)
26 PF13483 Lactamase_B_3: Beta-l 98.2 1.5E-05 3.2E-10 64.2 9.8 90 119-213 63-163 (163)
27 COG2220 Predicted Zn-dependent 98.0 0.0012 2.6E-08 57.1 18.1 95 118-215 102-213 (258)
28 TIGR03413 GSH_gloB hydroxyacyl 97.8 0.0002 4.3E-09 61.9 9.7 88 46-162 11-129 (248)
29 PRK11921 metallo-beta-lactamas 97.7 0.00034 7.4E-09 64.4 10.6 95 45-160 33-163 (394)
30 KOG1137 mRNA cleavage and poly 97.6 0.00033 7.1E-09 65.6 9.7 60 124-185 144-211 (668)
31 COG1782 Predicted metal-depend 97.6 0.00038 8.2E-09 64.7 9.9 164 24-202 183-398 (637)
32 KOG1136 Predicted cleavage and 97.6 0.00062 1.3E-08 60.4 10.7 60 124-185 140-208 (501)
33 KOG1135 mRNA cleavage and poly 97.3 0.002 4.4E-08 61.8 11.0 132 45-183 15-200 (764)
34 PRK05452 anaerobic nitric oxid 97.1 0.0047 1E-07 58.5 10.7 96 45-160 35-167 (479)
35 PLN02398 hydroxyacylglutathion 96.7 0.014 3E-07 52.5 9.7 90 46-162 88-209 (329)
36 PF00753 Lactamase_B: Metallo- 96.7 0.0054 1.2E-07 48.9 6.5 19 45-63 6-24 (194)
37 PRK10241 hydroxyacylglutathion 96.4 0.017 3.7E-07 49.9 8.0 87 48-162 15-130 (251)
38 PLN02469 hydroxyacylglutathion 96.1 0.051 1.1E-06 47.2 9.8 89 46-162 13-138 (258)
39 COG1237 Metal-dependent hydrol 95.8 0.015 3.2E-07 50.2 4.7 44 46-92 23-96 (259)
40 KOG3798 Predicted Zn-dependent 95.8 0.035 7.7E-07 47.7 6.9 87 129-216 196-301 (343)
41 TIGR00361 ComEC_Rec2 DNA inter 95.7 0.43 9.4E-06 47.1 15.1 95 123-229 538-650 (662)
42 COG0426 FpaA Uncharacterized f 95.4 0.11 2.5E-06 47.5 9.1 94 46-160 37-166 (388)
43 KOG1361 Predicted hydrolase in 94.9 0.17 3.7E-06 47.5 9.0 115 83-213 137-267 (481)
44 PLN02962 hydroxyacylglutathion 94.3 0.26 5.6E-06 42.7 8.3 39 122-162 106-153 (251)
45 PRK11539 ComEC family competen 94.3 1.1 2.4E-05 45.0 13.7 96 123-229 595-708 (755)
46 COG0491 GloB Zn-dependent hydr 93.6 0.91 2E-05 37.8 10.3 39 123-163 130-171 (252)
47 PF07521 RMMBL: RNA-metabolisi 91.5 0.28 6.1E-06 30.4 3.3 27 188-214 14-40 (43)
48 KOG0813 Glyoxylase [General fu 90.1 2.4 5.3E-05 36.9 8.9 71 64-161 64-141 (265)
49 COG2333 ComEC Predicted hydrol 82.2 13 0.00029 32.9 9.5 155 47-229 56-258 (293)
50 TIGR03675 arCOG00543 arCOG0054 69.9 9.9 0.00021 37.4 5.7 58 188-249 570-629 (630)
51 PF14597 Lactamase_B_5: Metall 67.3 12 0.00027 30.9 4.8 95 46-161 24-138 (199)
52 TIGR00649 MG423 conserved hypo 64.2 15 0.00033 34.0 5.6 58 188-250 358-418 (422)
53 COG3946 VirJ Type IV secretory 63.2 18 0.00039 33.6 5.5 64 153-219 263-338 (456)
54 KOG0814 Glyoxylase [General fu 58.4 23 0.00049 29.2 4.8 42 118-161 98-142 (237)
55 PRK09875 putative hydrolase; P 57.6 23 0.0005 31.4 5.2 36 192-228 164-201 (292)
56 PF06057 VirJ: Bacterial virul 51.2 27 0.00058 29.0 4.3 64 153-219 5-80 (192)
57 COG0595 mRNA degradation ribon 39.2 1.5E+02 0.0032 28.9 7.8 95 153-250 329-428 (555)
58 PTZ00175 diphthine synthase; P 37.8 1.1E+02 0.0024 26.7 6.3 72 158-229 11-102 (270)
59 PF01073 3Beta_HSD: 3-beta hyd 37.4 88 0.0019 27.2 5.7 58 155-213 49-115 (280)
60 COG2875 CobM Precorrin-4 methy 35.2 2E+02 0.0044 24.8 7.1 71 159-229 14-98 (254)
61 COG1219 ClpX ATP-dependent pro 34.6 43 0.00093 30.4 3.2 46 25-73 199-244 (408)
62 PF07522 DRMBL: DNA repair met 33.0 47 0.001 24.6 2.8 24 189-212 82-105 (110)
63 PF08915 tRNA-Thr_ED: Archaea- 31.0 2E+02 0.0042 22.6 6.0 26 193-218 59-87 (138)
64 PF02126 PTE: Phosphotriestera 30.5 85 0.0018 28.0 4.5 59 173-245 155-215 (308)
65 PF10087 DUF2325: Uncharacteri 29.6 1.3E+02 0.0027 21.6 4.6 53 167-228 42-94 (97)
66 PF09370 TIM-br_sig_trns: TIM- 29.0 1.8E+02 0.0039 25.5 6.1 73 153-229 153-236 (268)
67 PF13691 Lactamase_B_4: tRNase 28.7 56 0.0012 21.9 2.3 18 46-63 13-31 (63)
68 KOG1137 mRNA cleavage and poly 28.5 1.6E+02 0.0035 28.7 6.0 40 189-229 396-435 (668)
69 KOG1136 Predicted cleavage and 28.0 1.7E+02 0.0036 26.8 5.8 57 189-249 389-445 (501)
70 PF01339 CheB_methylest: CheB 26.9 67 0.0015 26.2 3.0 40 205-248 26-65 (182)
71 PF13483 Lactamase_B_3: Beta-l 25.2 55 0.0012 25.6 2.1 18 45-62 7-24 (163)
72 COG1735 Php Predicted metal-de 22.9 1.7E+02 0.0037 26.2 4.9 37 193-229 177-215 (316)
73 PF02402 Lysis_col: Lysis prot 22.5 38 0.00082 21.1 0.5 9 6-14 30-38 (46)
74 PRK11889 flhF flagellar biosyn 22.1 2.6E+02 0.0056 26.3 6.1 50 173-225 320-369 (436)
75 COG3845 ABC-type uncharacteriz 21.2 4.2E+02 0.0091 25.4 7.3 63 145-213 126-198 (501)
76 COG0156 BioF 7-keto-8-aminopel 21.2 3.9E+02 0.0084 24.8 7.1 29 153-182 102-131 (388)
77 KOG2145 Cytoplasmic tryptophan 20.9 97 0.0021 27.7 2.9 48 169-217 111-160 (397)
78 cd07187 YvcK_like family of mo 20.4 1.7E+02 0.0036 26.2 4.4 66 150-216 152-218 (308)
79 smart00846 Gp_dh_N Glyceraldeh 20.4 1.7E+02 0.0037 23.0 4.1 37 173-217 87-123 (149)
No 1
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=100.00 E-value=1.5e-34 Score=256.37 Aligned_cols=206 Identities=15% Similarity=0.076 Sum_probs=164.0
Q ss_pred eeeeeeccccCCCCCCChhhhheeeeeec----CcEEEEecCC---------------------------CCCCChhhHh
Q 025514 25 ISVYTSQISLPTSGFFPFKRILQACLQSS----FSTIALFVGF---------------------------LPMGLDDLRD 73 (251)
Q Consensus 25 ~~~~~s~~~~~~~~~~~~~~~~~~ll~~~----~~~iLiD~G~---------------------------Hi~GL~~l~~ 73 (251)
++|||+++.++.. |+.++ ++|+.+ +..+|||||+ |+.||+.++.
T Consensus 2 ~~LGt~~~~p~~~-r~~s~----~lv~~~~~~~~~~iLiD~G~g~~~~l~~~~i~~~~id~IfiTH~H~DHi~Gl~~ll~ 76 (303)
T TIGR02649 2 IFLGTSAGVPTRT-RNVTA----ILLNLQHPTQSGLWLFDCGEGTQHQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLC 76 (303)
T ss_pred EEEecCCCCCCCC-CCccE----EEEEccCCCCCCEEEEECCccHHHHHHHhCCCHHHCcEEEEeCCChhhcCCHHHHHH
Confidence 6899999998765 77777 888864 3789999997 9999998763
Q ss_pred --hhccCCCCccEEeCHHHHHHHHHhCCeeeecCCCCCCCcccceeEEEec-CceeEeCCEEEEEEEeccCCCcceEEEE
Q 025514 74 --WTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLKITPLPVWHGAGYRSLGFR 150 (251)
Q Consensus 74 --~~~~~~~~l~iygp~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~i~-~~~~~~~~~~I~~~~v~H~~~~~s~gy~ 150 (251)
+...+.++++||||+++.+.++..+.+.. .. .. ..+++++++ ++.++.++++|++++++|+. +|+||+
T Consensus 77 ~~~~~~~~~~l~Iygp~~~~~~l~~~~~~~~-~~---~~---~~~~~~~i~~~~~~~~~~~~v~~~~~~H~~--~~~gy~ 147 (303)
T TIGR02649 77 SRSMSGIIQPLTIYGPQGIREFVETALRISG-SW---TD---YPLEIVEIGAGEILDDGLRKVTAYPLEHPL--ECYGYR 147 (303)
T ss_pred HHHhcCCCCCeEEEechhHHHHHHHHHHhcc-cc---cC---CceEEEEcCCCceEecCCeEEEEEEccCcc--ceEEEE
Confidence 22335679999999999888876432211 11 11 135667775 36778889999999999998 999999
Q ss_pred Ec------------------------------------------------------eEEEeCCCCCCCcchhhhhCCCcE
Q 025514 151 FG------------------------------------------------------NICYISDVSEIPEETYPFLQDCEI 176 (251)
Q Consensus 151 i~------------------------------------------------------~i~Ys~Dt~~~~e~~~~~~~~~Dl 176 (251)
|+ +|+|+|||++. ++++++++|+|+
T Consensus 148 i~~~~~~g~~~~~kl~~lgi~~g~~~~~L~~g~~v~~~dg~~~~~~~~~~~~~~g~~i~y~gDt~~~-~~~~~~~~~adl 226 (303)
T TIGR02649 148 IEEHDKPGALNAQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGPC-DAALDLAKGVDV 226 (303)
T ss_pred EeccCCcCCCCHHHHHHCCCCCChHHHHhcCCCeEEeCCCcEEcHHHeeCCCCCCcEEEEecCCCCh-HHHHHHhcCCCE
Confidence 94 48999999995 689999999999
Q ss_pred EEEcccCCCC-----CCCCCCCHHHHHHHHHhcCCCeEEEEccCCCCCh---HHHHHHHHhhhhcCCCcEEEeecCeEEe
Q 025514 177 LIMDALRPDR-----SSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDH---EKVNEELLKLMETEGLDVQLSYDGLRVP 248 (251)
Q Consensus 177 Li~E~~~~~~-----~~~~H~t~~ea~~~a~~~~~k~lvltH~s~~~~~---~~l~~~l~~~~~~~~~~v~~A~DG~~i~ 248 (251)
|||||++.+. ..++|+|++||+++|+++++|+++|||++++++. +++.+++++. + .++.+|+|||++.
T Consensus 227 Li~Eat~~~~~~~~a~~~~H~t~~~a~~~a~~~~~k~lvL~H~s~~y~~~~~~~~~~~~~~~---~-~~~~~a~d~~~~~ 302 (303)
T TIGR02649 227 MVHEATLDITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRECRSI---F-PATELANDFTVFN 302 (303)
T ss_pred EEEeccCChhhHHHHhhcCCCCHHHHHHHHHHcCCCEEEEEEeccccCCccHHHHHHHHHHH---C-CCCEecccccEEe
Confidence 9999999753 3589999999999999999999999999999854 3444455542 3 4689999999987
Q ss_pred c
Q 025514 249 V 249 (251)
Q Consensus 249 l 249 (251)
+
T Consensus 303 ~ 303 (303)
T TIGR02649 303 V 303 (303)
T ss_pred C
Confidence 5
No 2
>PRK02113 putative hydrolase; Provisional
Probab=100.00 E-value=7.1e-34 Score=245.56 Aligned_cols=192 Identities=34% Similarity=0.554 Sum_probs=155.3
Q ss_pred hhheeeeeecCcEEEEecCC-------------------------CCCCChhhHhhhccCCCCccEEeCHHHHHHHHHhC
Q 025514 44 RILQACLQSSFSTIALFVGF-------------------------LPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTH 98 (251)
Q Consensus 44 ~~~~~ll~~~~~~iLiD~G~-------------------------Hi~GL~~l~~~~~~~~~~l~iygp~~~~~~l~~~~ 98 (251)
...|++|+.++..||||||+ |+.||+.++.+. +.++++||+|+++.+.+++.+
T Consensus 34 ~~~s~li~~~~~~iLiD~G~g~~~~l~~~~~~~id~I~lTH~H~DH~~gl~~l~~~~--~~~~~~i~~~~~~~~~l~~~~ 111 (252)
T PRK02113 34 LRTSALVETEGARILIDCGPDFREQMLRLPFGKIDAVLITHEHYDHVGGLDDLRPFC--RFGEVPIYAEQYVAERLRSRM 111 (252)
T ss_pred eeeEEEEEECCeEEEEECCchHHHHHHhcCccccCEEEECCCChhhhCCHHHHHHhc--cCCCceEEECHHHHHHHHhhC
Confidence 34449999999999999997 999999887553 457999999999999998866
Q ss_pred CeeeecCCCCCCCcccceeEEEec-CceeEeCCEEEEEEEeccCCCcceEEEEEceEEEeCCCCCCCcchhhhhCCCcEE
Q 025514 99 YYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLKITPLPVWHGAGYRSLGFRFGNICYISDVSEIPEETYPFLQDCEIL 177 (251)
Q Consensus 99 ~~~~~~~~~~~g~~~~~~~~~~i~-~~~~~~~~~~I~~~~v~H~~~~~s~gy~i~~i~Ys~Dt~~~~e~~~~~~~~~DlL 177 (251)
++.+... .+++ .+.+++++++ ++++++++++|++++++|+. .+++||++.+++|++||++++++++++++++|+|
T Consensus 112 ~~~~~~~-~~~~--~~~~~~~~~~~g~~~~~~~~~i~~~~~~H~~-~~~~gy~i~~i~y~~Dt~~~~~~~~~~~~~~DlL 187 (252)
T PRK02113 112 PYCFVEH-SYPG--VPNIPLREIEPDRPFLVNHTEVTPLRVMHGK-LPILGYRIGKMAYITDMLTMPEEEYEQLQGIDVL 187 (252)
T ss_pred CeeeccC-CCCC--CcceeeEEcCCCCCEEECCeEEEEEEecCCC-ccEEEEEeCCEEEccCCCCCCHHHHHHhcCCCEE
Confidence 5544321 1122 1236677776 47899999999999999974 3899999999999999998887889999999999
Q ss_pred EEcccCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEccCCCCC-hHHHHHHHHhhhhcCCCcEEEeecCeEEec
Q 025514 178 IMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMD-HEKVNEELLKLMETEGLDVQLSYDGLRVPV 249 (251)
Q Consensus 178 i~E~~~~~~~~~~H~t~~ea~~~a~~~~~k~lvltH~s~~~~-~~~l~~~l~~~~~~~~~~v~~A~DG~~i~l 249 (251)
|+|+++. ...++|++++|++++++++++|+++|||+++++. .+++.++++ .++.+|+|||+|++
T Consensus 188 i~e~~~~-~~~~~H~t~~~a~~~~~~~~~k~l~l~H~s~~~~~~~~~~~~~~-------~~~~~A~Dg~~~~~ 252 (252)
T PRK02113 188 VMNALRI-APHPTHQSLEEALENIKRIGAKETYLIHMSHHIGLHADVEKELP-------PHVHFAYDGLEIIF 252 (252)
T ss_pred EEhhhcC-CCCCCcCCHHHHHHHHHHhCCCEEEEEcccccchhHHHHHHhCC-------CCceeccCceEEeC
Confidence 9999873 4568999999999999999999999999999873 333333222 36899999999874
No 3
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=100.00 E-value=1.1e-33 Score=250.01 Aligned_cols=206 Identities=19% Similarity=0.185 Sum_probs=164.3
Q ss_pred eeeeeeccccCCCCCCChhhhheeeeeecCcEEEEecCC---------------------------CCCCChhhHhhh--
Q 025514 25 ISVYTSQISLPTSGFFPFKRILQACLQSSFSTIALFVGF---------------------------LPMGLDDLRDWT-- 75 (251)
Q Consensus 25 ~~~~~s~~~~~~~~~~~~~~~~~~ll~~~~~~iLiD~G~---------------------------Hi~GL~~l~~~~-- 75 (251)
++|||.++.++.. |+.+| ++|+.++..+|||||+ |+.||+.++...
T Consensus 3 ~~lGtg~~~p~~~-r~~~~----~~v~~~~~~iLiD~G~g~~~~l~~~~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~ 77 (299)
T TIGR02651 3 TFLGTGGGVPTKE-RNLPS----IALKLNGELWLFDCGEGTQRQMLRSGISPMKIDRIFITHLHGDHILGLPGLLSTMSF 77 (299)
T ss_pred EEEeCCCCCCCCC-CCCce----EEEEECCeEEEEECCHHHHHHHHHcCCCHHHCcEEEEECCchhhhcChHHHHHhhcc
Confidence 6899988777654 77666 8899999999999996 899999886431
Q ss_pred ccCCCCccEEeCHHHHHHHHHhCCeeeecCCCCCCCcccceeEEEecC-c-eeEeCCEEEEEEEeccCCCcceEEEEEc-
Q 025514 76 NNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDE-E-PFTVQDLKITPLPVWHGAGYRSLGFRFG- 152 (251)
Q Consensus 76 ~~~~~~l~iygp~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~i~~-~-~~~~~~~~I~~~~v~H~~~~~s~gy~i~- 152 (251)
..+.++++||||+++.+.++..+.+.... . ...+++++++. + .++.++++|++++++|+. +++||+|+
T Consensus 78 ~~~~~~i~Iy~p~~~~~~l~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~H~~--~~~gy~i~~ 148 (299)
T TIGR02651 78 QGRKEPLTIYGPPGIKEFIETSLRVSYTY----L---NYPIKIHEIEEGGLVFEDDGFKVEAFPLDHSI--PSLGYRFEE 148 (299)
T ss_pred CCCCceEEEECCccHHHHHHHHHHHcccC----C---CceEEEEEccCCCceEecCCEEEEEEEcCCCC--ceEEEEEEE
Confidence 23456899999999998887643322111 1 11356667754 4 588999999999999987 99999985
Q ss_pred -----------------------------------------------------eEEEeCCCCCCCcchhhhhCCCcEEEE
Q 025514 153 -----------------------------------------------------NICYISDVSEIPEETYPFLQDCEILIM 179 (251)
Q Consensus 153 -----------------------------------------------------~i~Ys~Dt~~~~e~~~~~~~~~DlLi~ 179 (251)
+|+|+|||+++ ++++++++++|+|||
T Consensus 149 ~~~~~~~~~~k~~~~~l~~g~~~~~L~~g~~v~~~~G~~~~~~~~~~~~~~g~~i~y~gDt~~~-~~~~~~~~~~dlLi~ 227 (299)
T TIGR02651 149 KDRPGKFDREKAKELGIPPGPLYGKLKRGETVTLIDGRIIDPEDVLGPPRKGRKIAYTGDTRPC-EEVIEFAKNADLLIH 227 (299)
T ss_pred CCCCCCcCHHHHHHCCCCcchhHHHhhCCCeEEeCCCeEEeHHHcccCCcCCcEEEEecCCCCh-HHHHHHHcCCCEEEE
Confidence 59999999996 579999999999999
Q ss_pred cccCCCC-----CCCCCCCHHHHHHHHHhcCCCeEEEEccCCCCC-hHHHHHHHHhhhhcCCCcEEEeecCeEEec
Q 025514 180 DALRPDR-----SSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMD-HEKVNEELLKLMETEGLDVQLSYDGLRVPV 249 (251)
Q Consensus 180 E~~~~~~-----~~~~H~t~~ea~~~a~~~~~k~lvltH~s~~~~-~~~l~~~l~~~~~~~~~~v~~A~DG~~i~l 249 (251)
||+|.++ ..++|++++||+++++++++|+++|||++++++ .+++.+++++. + .++.+|+|||+|++
T Consensus 228 E~~~~~~~~~~~~~~~H~t~~~a~~~~~~~~~k~lvltH~s~~~~~~~~~~~~~~~~---~-~~~~~a~dg~~~~~ 299 (299)
T TIGR02651 228 EATFLDEDKKLAKEYGHSTAAQAAEIAKEANVKRLILTHISPRYSDEEELLEEAKKI---F-PNTYIAEDFMEIEI 299 (299)
T ss_pred ECCCCchhHHHHhhcCCCCHHHHHHHHHHcCCCEEEEEecccccCChHHHHHHHHHh---C-CCcEEccCccEeeC
Confidence 9999864 348999999999999999999999999999884 34444445442 2 47999999999975
No 4
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=100.00 E-value=5.4e-32 Score=238.40 Aligned_cols=214 Identities=17% Similarity=0.098 Sum_probs=153.3
Q ss_pred eeeeeeccccCCCCCCChhhhheeeeeecCcEEEEecCC---------------------------CCCCChhhHhhh--
Q 025514 25 ISVYTSQISLPTSGFFPFKRILQACLQSSFSTIALFVGF---------------------------LPMGLDDLRDWT-- 75 (251)
Q Consensus 25 ~~~~~s~~~~~~~~~~~~~~~~~~ll~~~~~~iLiD~G~---------------------------Hi~GL~~l~~~~-- 75 (251)
++|||+++.+++. |+.++ ++|+.++..+|||||+ |+.||+.|....
T Consensus 5 ~fLGtg~~~Pt~~-r~~~s----~ll~~~~~~~L~DcGeGt~~~l~~~~~~~~~i~~IfITH~H~DHi~gL~~ll~~~~~ 79 (292)
T COG1234 5 TFLGTGGAVPTKD-RNVSS----ILLRLEGEKFLFDCGEGTQHQLLRAGLPPRKIDAIFITHLHGDHIAGLPGLLVSRSF 79 (292)
T ss_pred EEEecCCCCCcCc-cccce----eEEEeCCeeEEEECCHhHHHHHHHhcCChhhccEEEeeccccchhcCcHHHHHHhhc
Confidence 6899999988875 88888 8898889999999996 999999876532
Q ss_pred ccCCCCccEEeCHHHHHHHHHhCCee-----eecC-CCCCCCcccceeEEE--ec------C----ceeEeC--------
Q 025514 76 NNVQRHIPIYVAMRDFEVMKKTHYYL-----VDTS-GIIPGAAVSELQFNI--ID------E----EPFTVQ-------- 129 (251)
Q Consensus 76 ~~~~~~l~iygp~~~~~~l~~~~~~~-----~~~~-~~~~g~~~~~~~~~~--i~------~----~~~~~~-------- 129 (251)
..+.+|+.||||++..+.+....... +... ....+ ..+++.. .+ + +....+
T Consensus 80 ~~~~~~l~iygP~g~~~~~~~~~~~~~~~~~~~i~~~e~~~---~~~~v~~~~~~h~~~~~~y~~~e~~~~~~~~~~~~~ 156 (292)
T COG1234 80 RGRREPLKIYGPPGIKEFVETSLRLSYSKLTYEIIGHEIEE---DAFEVEALELDHGVPALGYRIEEPDRPGRFDAEKLK 156 (292)
T ss_pred cCCCCceeEECCcchhhhhhhhhhhcccccceEEEEEEecc---CceEEEEEecCCCccccceeeecCCCcCcCCHHHhc
Confidence 34455899999999887776532110 0000 00000 0011111 00 0 011112
Q ss_pred ----CEEEEEEEeccCCC--cceEEEEEc------eEEEeCCCCCCCcchhhhhCCCcEEEEcccCCCC----CC-CCCC
Q 025514 130 ----DLKITPLPVWHGAG--YRSLGFRFG------NICYISDVSEIPEETYPFLQDCEILIMDALRPDR----SS-STHF 192 (251)
Q Consensus 130 ----~~~I~~~~v~H~~~--~~s~gy~i~------~i~Ys~Dt~~~~e~~~~~~~~~DlLi~E~~~~~~----~~-~~H~ 192 (251)
+..++.++..|+.. .+++++++. +|+|+|||+|+ ++++++++|||+|||||++.+. .. .+|+
T Consensus 157 ~~~~g~~~~~l~~~h~~~~~~~~~~~~~~~~~~G~~v~ysGDT~p~-~~~~~~a~~aDlLiHEat~~~~~~~~a~~~~Hs 235 (292)
T COG1234 157 GLPPGPLITALKAGHPVEERVITPADRIGEPRKGKSVVYSGDTRPC-DELIDLAKGADLLIHEATFEDDLEDLANEGGHS 235 (292)
T ss_pred CCCCchHHHHHhCCCceeeeecCHHHhccccCCCcEEEEECCCCCC-HHHHHHhcCCCEEEEeccCCchhhhHHhhcCCC
Confidence 67778888888821 156666665 89999999997 5899999999999999999763 22 4499
Q ss_pred CHHHHHHHHHhcCCCeEEEEccCCCCC--hHHHHHHHHhhhhcCCCcEEEeecCeEEecc
Q 025514 193 GLPRALEEVRKIQPKRTLFIGMMHLMD--HEKVNEELLKLMETEGLDVQLSYDGLRVPVM 250 (251)
Q Consensus 193 t~~ea~~~a~~~~~k~lvltH~s~~~~--~~~l~~~l~~~~~~~~~~v~~A~DG~~i~l~ 250 (251)
|.+||+++|+++++|+++|||++++++ .+++.++.++. +..++.+|+|||++++.
T Consensus 236 T~~eAa~iA~~A~vk~LiLtH~s~ry~~~~~~~~~ea~~~---f~~~~~~a~D~~~~~v~ 292 (292)
T COG1234 236 TAEEAAEIAKEAGVKKLILTHFSPRYPKDDEELLKEARAI---FPGETIVARDGLVFEVP 292 (292)
T ss_pred CHHHHHHHHHHcCCCeEEEEeecccccchHHHHHHHHHHh---CCCceEEeccceEEecC
Confidence 999999999999999999999999994 45555555553 32359999999999873
No 5
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.97 E-value=2.8e-30 Score=228.82 Aligned_cols=192 Identities=16% Similarity=0.234 Sum_probs=142.6
Q ss_pred ChhhhheeeeeecCc-EEEEecCC----------------------------------CCCCChhhHhhhccCCCCccEE
Q 025514 41 PFKRILQACLQSSFS-TIALFVGF----------------------------------LPMGLDDLRDWTNNVQRHIPIY 85 (251)
Q Consensus 41 ~~~~~~~~ll~~~~~-~iLiD~G~----------------------------------Hi~GL~~l~~~~~~~~~~l~iy 85 (251)
......|++|+.++. .||||||+ |+.||+.|+ +.++|+||
T Consensus 35 ~~R~~ss~li~~~g~~~iLiD~G~g~~~ql~~~~~~~~~~g~~~~~ldav~lTH~H~DHi~Gl~~l~-----~~~~l~Vy 109 (302)
T PRK05184 35 KPRTQSSIAVSADGEDWVLLNASPDIRQQIQATPALQPARGLRDTPIAAVVLTDGQIDHTTGLLTLR-----EGQPFPVY 109 (302)
T ss_pred CcccccEEEEEcCCCEEEEEECChhHHHHHHhchhcCccccCCcccccEEEEeCCchhhhhChHhhc-----cCCCeEEE
Confidence 334445599987664 69999997 677776663 36799999
Q ss_pred eCHHHHHHHHHhCCeeeecCCCCCCCcccceeEEEec-CceeEeC---CEEEEEEEeccCC-----------CcceEEEE
Q 025514 86 VAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQ---DLKITPLPVWHGA-----------GYRSLGFR 150 (251)
Q Consensus 86 gp~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~i~-~~~~~~~---~~~I~~~~v~H~~-----------~~~s~gy~ 150 (251)
||+++.+.+++.+++. ... .+ .+.+++++++ +++++++ +++|++++++|+. +.+|+|||
T Consensus 110 g~~~~~~~l~~~~~~f-~~~---~~--~~~~~~~~i~~~~~~~i~~~~~~~Vt~~~v~H~~~~~~~~~~~~h~~~~~gyr 183 (302)
T PRK05184 110 ATPAVLEDLSTGFPIF-NVL---DH--YGGVQRRPIALDGPFAVPGLPGLRFTAFPVPSKAPPYSPHRSDPEPGDNIGLR 183 (302)
T ss_pred eCHHHHHHHHhcCCcc-ccc---cc--ccceeeEEecCCCceEecCCCCcEEEEEEcCCCCCcccccccCCCCCCeEEEE
Confidence 9999999998754432 111 11 1346777776 4778886 8999999998752 13799999
Q ss_pred Ec------eEEEeCCCCCCCcchhhhhCCCcEEEEcccCCCC-------------CCCCCCCHH---HHHHHHHhcCCCe
Q 025514 151 FG------NICYISDVSEIPEETYPFLQDCEILIMDALRPDR-------------SSSTHFGLP---RALEEVRKIQPKR 208 (251)
Q Consensus 151 i~------~i~Ys~Dt~~~~e~~~~~~~~~DlLi~E~~~~~~-------------~~~~H~t~~---ea~~~a~~~~~k~ 208 (251)
|+ +++|++|+...+++++++++++|+||+||++... ...+|++.+ ++++.++++++|+
T Consensus 184 i~~~~~g~~~~y~tD~~~~~~~~~~~~~gaDlli~da~~~~~~~~~~~g~~~~~~~~~~H~~~~~~~~~l~~~~~~~~k~ 263 (302)
T PRK05184 184 IEDRATGKRLFYAPGLAEVTDALRARLAGADCVLFDGTLWTDDEMIRAGVGTKTGRRMGHLPQSGPGGMIAALARLPIAR 263 (302)
T ss_pred EEecCCCcEEEEECCCCCCCHHHHHHHhcCCEEEEeCCCCcCHHHHhcccCccccccCCCCCCCChHHHHHHhhcCCCCc
Confidence 93 7999999966678999999999999999985321 135788865 4677888889999
Q ss_pred EEEEccCCCCCh---H-HHHHHHHhhhhcCCCcEEEeecCeEEec
Q 025514 209 TLFIGMMHLMDH---E-KVNEELLKLMETEGLDVQLSYDGLRVPV 249 (251)
Q Consensus 209 lvltH~s~~~~~---~-~l~~~l~~~~~~~~~~v~~A~DG~~i~l 249 (251)
++|||++|.++. . ++++++.. .++++|||||+|+|
T Consensus 264 l~ltHl~h~~~~~~~~~~~~~~~~~------~~~~~A~DGm~i~l 302 (302)
T PRK05184 264 KILIHINNTNPILDEDSPERAELEA------AGIEVAHDGMEIEL 302 (302)
T ss_pred EEEEEcCCCChhhccCCHHHHHHHh------CCCEEccCCcEEeC
Confidence 999999986532 1 23344443 36899999999985
No 6
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.97 E-value=4.7e-29 Score=215.43 Aligned_cols=196 Identities=26% Similarity=0.435 Sum_probs=147.4
Q ss_pred eeeeeecc------------------ccCCCCCCChhhhheeeeeecCcEEEEecCC-----------------------
Q 025514 25 ISVYTSQI------------------SLPTSGFFPFKRILQACLQSSFSTIALFVGF----------------------- 63 (251)
Q Consensus 25 ~~~~~s~~------------------~~~~~~~~~~~~~~~~ll~~~~~~iLiD~G~----------------------- 63 (251)
++|||.++ .+.. .|++.+ ++|+.++..||||||.
T Consensus 4 ~~lGs~~~~~~p~~~c~c~~c~~~~~~p~~-~r~~~s----~li~~~~~~iLiD~G~~~~~~~~~~~~i~~i~iTH~H~D 78 (250)
T PRK11244 4 TLLGTGGAQGVPVFGCECAACARARRDPAY-RRRPCS----ALIEFNGARTLIDAGLPDLAERFPPGSLQQILLTHYHMD 78 (250)
T ss_pred EEEeccCCCCccCCCccchhhhhhhcCCCC-CcceeE----EEEEECCCEEEEECCChHHhhcCCcccCCEEEEccCchh
Confidence 57788777 4433 255555 8999999999999994
Q ss_pred CCCCChhhHhhhccCCCCccEEeCHHHHHHHHHhCCeeeecCCCCCCCcccceeE-EEec-CceeEeCCEEEEEEEeccC
Q 025514 64 LPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQF-NIID-EEPFTVQDLKITPLPVWHG 141 (251)
Q Consensus 64 Hi~GL~~l~~~~~~~~~~l~iygp~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~-~~i~-~~~~~~~~~~I~~~~v~H~ 141 (251)
|+.||..++ + .+.++++||+|+++.. +...+.+ ++ .+++ +.++ ++++++++++|+++++.|+
T Consensus 79 Hi~gl~~l~-~--~~~~~i~i~~~~~~~~-~~~~~~~--------~~----~~~~~~~l~~~~~~~~~~~~I~~~~~~H~ 142 (250)
T PRK11244 79 HVQGLFPLR-W--GVGDPIPVYGPPDPEG-CDDLFKH--------PG----ILDFSHPLEPFEPFDLGGLQVTPLPLNHS 142 (250)
T ss_pred hhccHHHHH-h--hcCCceeEEeCCchhh-HHHHhcC--------cc----ccccccccCCCCCeeECCEEEEEEeeCCC
Confidence 888887664 3 3457899999987632 2221111 11 1122 2233 4788999999999999998
Q ss_pred CCcceEEEEEc----eEEEeCCCCCCCcchhhhh--CCCcEEEEcccCCCC--CCCCCCCHHHHHHHHHhcCCCeEEEEc
Q 025514 142 AGYRSLGFRFG----NICYISDVSEIPEETYPFL--QDCEILIMDALRPDR--SSSTHFGLPRALEEVRKIQPKRTLFIG 213 (251)
Q Consensus 142 ~~~~s~gy~i~----~i~Ys~Dt~~~~e~~~~~~--~~~DlLi~E~~~~~~--~~~~H~t~~ea~~~a~~~~~k~lvltH 213 (251)
. +++||+|+ +++|+|||.++++.+.+++ +++|+|++||++.++ ...+|+++++++++++++++|++++||
T Consensus 143 ~--~s~g~~i~~~~~~i~ysgDt~~~~~~~~~~~~~~~~Dlli~e~~~~~~~~~~~~H~~~~~a~~~a~~~~~k~lvltH 220 (250)
T PRK11244 143 K--LTFGYLLETAHSRVAYLTDTVGLPEDTLKFLRNNQPDLLVLDCSHPPQEDAPRNHNDLTTALAIIEVLRPPRVILTH 220 (250)
T ss_pred c--ceeEEEEecCCeEEEEEcCCCCCCHHHHHHHhcCCCCEEEEeCcCCCCCCCCCCCCCHHHHHHHHHhcCCceEEEEc
Confidence 8 89999998 8999999998776677775 589999999999764 357899999999999999999999999
Q ss_pred cCCCCChHHHHHHHHhhhhcCCCcEEEeecCeEEec
Q 025514 214 MMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPV 249 (251)
Q Consensus 214 ~s~~~~~~~l~~~l~~~~~~~~~~v~~A~DG~~i~l 249 (251)
++++++ ++.++... ...++.+|+|||+++|
T Consensus 221 ~~~~~~--~~~~~~~~----~~~~~~~a~DG~~i~~ 250 (250)
T PRK11244 221 ISHQLD--AWLMENAA----LPSGVEVAYDGMEIGL 250 (250)
T ss_pred ccCCcc--hhhhhhhh----cCCceEEecCccEeeC
Confidence 998764 22222221 2247999999999975
No 7
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=99.96 E-value=2e-28 Score=216.56 Aligned_cols=189 Identities=17% Similarity=0.282 Sum_probs=140.2
Q ss_pred hhhhheeeeee-cCcEEEEecCC----------------------------------CCCCChhhHhhhccCCCCccEEe
Q 025514 42 FKRILQACLQS-SFSTIALFVGF----------------------------------LPMGLDDLRDWTNNVQRHIPIYV 86 (251)
Q Consensus 42 ~~~~~~~ll~~-~~~~iLiD~G~----------------------------------Hi~GL~~l~~~~~~~~~~l~iyg 86 (251)
.....|++|+. ++..||||||+ |+.||+.|+ +..+|+||+
T Consensus 35 ~R~rss~ll~~~g~~~iLID~Gpd~r~ql~~~~~~~~~~gl~~~~IdaI~lTH~H~DHi~GL~~L~-----~~~~lpVya 109 (302)
T TIGR02108 35 ARTQSSIAVSADGERWVLLNASPDIRQQIQATPALHPQRGLRHTPIAGVVLTDGEIDHTTGLLTLR-----EGQPFTLYA 109 (302)
T ss_pred cccccEEEEEeCCCEEEEEECCHHHHHHHHhCcccccccCCCcccCCEEEEeCCCcchhhCHHHHc-----CCCCceEEE
Confidence 34445588966 44689999997 788887775 347999999
Q ss_pred CHHHHHHHHHhCCeeeecCCCCCCCcccceeEEEec-CceeEe-----CCEEEEEEEec--------c--C-C-CcceEE
Q 025514 87 AMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTV-----QDLKITPLPVW--------H--G-A-GYRSLG 148 (251)
Q Consensus 87 p~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~i~-~~~~~~-----~~~~I~~~~v~--------H--~-~-~~~s~g 148 (251)
++++++.|++ ++ .+... +. ..++++.++ ++++.+ ++++|++|+++ | + . +.+++|
T Consensus 110 ~~~t~~~L~~-~~-~~~~~---~~---~~~~~~~i~~~~~~~~~~~~~~g~~I~~f~v~h~~~~~~~H~~~d~~~~~~~G 181 (302)
T TIGR02108 110 TEMVLQDLSD-NP-IFNVL---DH---WNVRRQPIALNEKFEFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPHPGDTLG 181 (302)
T ss_pred CHHHHHHHHh-CC-Ccccc---ch---hhccceEecCCCcEEecccccCCEEEEEEEcCCCCCccccccccCCCCCCcEE
Confidence 9999999976 43 22211 11 124445554 356655 36999999999 6 2 1 148999
Q ss_pred EEEc------eEEEeCCCCCCCcchhhhhCCCcEEEEcccC-CC----------C--CCCCCCCHH---HHHHHHHhcCC
Q 025514 149 FRFG------NICYISDVSEIPEETYPFLQDCEILIMDALR-PD----------R--SSSTHFGLP---RALEEVRKIQP 206 (251)
Q Consensus 149 y~i~------~i~Ys~Dt~~~~e~~~~~~~~~DlLi~E~~~-~~----------~--~~~~H~t~~---ea~~~a~~~~~ 206 (251)
|+|+ +++|++|++.++++++++++++|+||+||++ .+ + ...+|++.+ ++++.+.+.++
T Consensus 182 y~i~~~~~g~~~~y~tD~g~~~~~~~~~l~~~d~liida~~~~d~e~l~~g~ypri~~~~gHls~~~~~~al~~~~~~~~ 261 (302)
T TIGR02108 182 LKIEDGTTGKRLFYIPGCAEITDDLKARMAGADLVFFDGTLWRDDEMIRAGVGTKTGRRMGHVSMSGEGGSLAVLADLEI 261 (302)
T ss_pred EEEEeCCCCcEEEEECCCCCCCHHHHHHHhCCCEEEEeCCCCCcHHHHhcCCCCCcCCCCCCCCccchHHHHHHhhcCCC
Confidence 9997 4999999998889999999999999999984 32 1 346788877 56666666789
Q ss_pred CeEEEEccCCCC---C-hHHHHHHHHhhhhcCCCcEEEeecCeEEec
Q 025514 207 KRTLFIGMMHLM---D-HEKVNEELLKLMETEGLDVQLSYDGLRVPV 249 (251)
Q Consensus 207 k~lvltH~s~~~---~-~~~l~~~l~~~~~~~~~~v~~A~DG~~i~l 249 (251)
++++|+|+++.+ + +..+.++++. .++++|||||+|+|
T Consensus 262 ~~~~l~Hl~h~~~~~~~~~~~~~~~~~------~~~~~ayDG~~~~l 302 (302)
T TIGR02108 262 ARKVLIHINNTNPILDEDSPERAEVEA------AGWEVAYDGMEIVL 302 (302)
T ss_pred CcEEEEecCCCCcCCCCCCHHHHHHHH------cCCEEecCCcEEeC
Confidence 999999999987 3 3344555553 37999999999985
No 8
>PRK00055 ribonuclease Z; Reviewed
Probab=99.95 E-value=2.4e-27 Score=205.84 Aligned_cols=209 Identities=16% Similarity=0.077 Sum_probs=146.1
Q ss_pred eeeeeeccccCCCCCCChhhhheeeeeecCcEEEEecCC---------------------------CCCCChhhHhh--h
Q 025514 25 ISVYTSQISLPTSGFFPFKRILQACLQSSFSTIALFVGF---------------------------LPMGLDDLRDW--T 75 (251)
Q Consensus 25 ~~~~~s~~~~~~~~~~~~~~~~~~ll~~~~~~iLiD~G~---------------------------Hi~GL~~l~~~--~ 75 (251)
++|||.++.+... |..+| ++|+.++..+|||||+ |+.||+.+... .
T Consensus 5 ~~LGsg~~~~~~~-r~~~~----~li~~~~~~iLiD~G~g~~~~l~~~~~~~~~i~~i~lTH~H~DHi~Gl~~l~~~~~~ 79 (270)
T PRK00055 5 TFLGTGSGVPTPT-RNVSS----ILLRLGGELFLFDCGEGTQRQLLKTGIKPRKIDKIFITHLHGDHIFGLPGLLSTRSL 79 (270)
T ss_pred EEEecCCCCCcCC-CCCCE----EEEEECCcEEEEECCHHHHHHHHHcCCCHHHCCEEEEeCCCchhhCcHHHHHHHhhh
Confidence 5789987765544 65555 9999999999999996 89999988642 2
Q ss_pred ccCCCCccEEeCHHHHHHHHHh------CCeeeecCCCCCCCcccceeEEE-----ec-Ccee-Ee-CCEEEEEEEeccC
Q 025514 76 NNVQRHIPIYVAMRDFEVMKKT------HYYLVDTSGIIPGAAVSELQFNI-----ID-EEPF-TV-QDLKITPLPVWHG 141 (251)
Q Consensus 76 ~~~~~~l~iygp~~~~~~l~~~------~~~~~~~~~~~~g~~~~~~~~~~-----i~-~~~~-~~-~~~~I~~~~v~H~ 141 (251)
..+.++++||||+++.+.++.. +++.+.... .++ .+.... +. +..+ ++ .+.++. ..+|.
T Consensus 80 ~~~~~~l~iy~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~ 152 (270)
T PRK00055 80 SGRTEPLTIYGPKGIKEFVETLLRASGSLGYRIAEKD-KPG----KLDAEKLKALGVPPGPLFGKLKRGEDVT--LEDGR 152 (270)
T ss_pred cCCCceEEEECCccHHHHHHHHHHHhhceeEEEEEcC-CCC----CCCHHHHHHCCCCCCchHHHhhCCCeEE--eCCCc
Confidence 2356899999999988877542 122221100 000 011000 00 0000 00 112221 12233
Q ss_pred CCcceEEEEEc----eEEEeCCCCCCCcchhhhhCCCcEEEEcccCCCC-----CCCCCCCHHHHHHHHHhcCCCeEEEE
Q 025514 142 AGYRSLGFRFG----NICYISDVSEIPEETYPFLQDCEILIMDALRPDR-----SSSTHFGLPRALEEVRKIQPKRTLFI 212 (251)
Q Consensus 142 ~~~~s~gy~i~----~i~Ys~Dt~~~~e~~~~~~~~~DlLi~E~~~~~~-----~~~~H~t~~ea~~~a~~~~~k~lvlt 212 (251)
...+++||+++ +|+|+|||+++ ++++++++++|+||+||++.+. ..++|+++++++++++++++|++++|
T Consensus 153 ~i~~~~~~~~~~~g~~~~y~~Dt~~~-~~~~~~~~~~d~li~E~~~~~~~~~~~~~~~H~~~~~a~~~~~~~~~~~~vl~ 231 (270)
T PRK00055 153 IINPADVLGPPRKGRKVAYCGDTRPC-EALVELAKGADLLVHEATFGDEDEELAKEYGHSTARQAAEIAKEAGVKRLILT 231 (270)
T ss_pred EEeHHHeeccCCCCcEEEEeCCCCCc-HHHHHHhCCCCEEEEeccCCcchhhHHhhcCCCCHHHHHHHHHHcCCCEEEEE
Confidence 11278999997 89999999997 4799999999999999999864 24799999999999999999999999
Q ss_pred ccCCCCC--hHHHHHHHHhhhhcCCCcEEEeecCeEEecc
Q 025514 213 GMMHLMD--HEKVNEELLKLMETEGLDVQLSYDGLRVPVM 250 (251)
Q Consensus 213 H~s~~~~--~~~l~~~l~~~~~~~~~~v~~A~DG~~i~l~ 250 (251)
|++++++ ++++.+++++. + .++.+|+|||+|+|.
T Consensus 232 H~~~~~~~~~~~~~~~~~~~---~-~~v~~a~Dg~~i~l~ 267 (270)
T PRK00055 232 HFSPRYTGDPEELLKEAREI---F-PNTELAEDLMRVEVP 267 (270)
T ss_pred eeccccCCCHHHHHHHHHHH---c-CCcEEccCCcEEEec
Confidence 9999884 45666666553 2 489999999999875
No 9
>PRK02126 ribonuclease Z; Provisional
Probab=99.95 E-value=5.7e-27 Score=209.95 Aligned_cols=168 Identities=14% Similarity=0.150 Sum_probs=131.9
Q ss_pred heeeeee--cCcEEEEecCC-----------------------CCCCChhhHhhhccCCCCccEEeCHHHHHHHHHhCC-
Q 025514 46 LQACLQS--SFSTIALFVGF-----------------------LPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHY- 99 (251)
Q Consensus 46 ~~~ll~~--~~~~iLiD~G~-----------------------Hi~GL~~l~~~~~~~~~~l~iygp~~~~~~l~~~~~- 99 (251)
+|+++.. ++..+|||||+ |+.|++.|+.+...+..+++||||+++.+.++..+.
T Consensus 17 n~~~l~~~~~~~~iLiD~G~~~~l~~~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~~~r~~~l~iygp~~~~~~l~~~~~~ 96 (334)
T PRK02126 17 PGLYVDFLFERRALLFDLGDLHHLPPRELLRISHIFVSHTHMDHFIGFDRLLRHCLGRPRRLRLFGPPGFADQVEHKLAG 96 (334)
T ss_pred cEEEEEECCCCeEEEEcCCCHHHHhhcCCCccCEEEEcCCChhHhCcHHHHHHHhccCCCCeEEEECHHHHHHHHHHhcc
Confidence 4577765 47899999996 899999998765456789999999999999988654
Q ss_pred eeeecCCCCCCCcccceeEEEec-----------------------------CceeEeCCEEEEEEEeccCCCcceEEEE
Q 025514 100 YLVDTSGIIPGAAVSELQFNIID-----------------------------EEPFTVQDLKITPLPVWHGAGYRSLGFR 150 (251)
Q Consensus 100 ~~~~~~~~~~g~~~~~~~~~~i~-----------------------------~~~~~~~~~~I~~~~v~H~~~~~s~gy~ 150 (251)
+.+... ++ ..+.+.++.++ +..++.++++|++++++|+. ||+||+
T Consensus 97 y~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~a~~~~H~v--p~~gy~ 170 (334)
T PRK02126 97 YTWNLV---EN-YPTTFRVHEVELHDGRIRRALFSCRRAFAREAEEELSLPDGVLLDEPWFRVRAAFLDHGI--PCLAFA 170 (334)
T ss_pred ccccCc---cc-CCCceEEEEEEccCccceeeeecccccccccccccccCCCCeEEeCCCEEEEEEEccCCC--ceeEEE
Confidence 322110 00 01112221110 12367789999999999998 999999
Q ss_pred Ec-----------------------------------------------------------------------eEEEeCC
Q 025514 151 FG-----------------------------------------------------------------------NICYISD 159 (251)
Q Consensus 151 i~-----------------------------------------------------------------------~i~Ys~D 159 (251)
|+ +|+|+||
T Consensus 171 ~~e~~~~~~~~ek~~~~gi~~g~~~~~Lk~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~v~y~gD 250 (334)
T PRK02126 171 LEEKAHINIDKNRLAELGLPPGPWLRELKHAVLRGEPDDTPIRVLWRDGGGEHERVRPLGELKERVLRIEPGQKIGYVTD 250 (334)
T ss_pred EEecCCcCcCHHHHHHcCCCCChHHHHHHhhhhccCCCCceEEeeccCCCccceeEecHHHHHHHhccCCCCCEEEEECC
Confidence 95 4999999
Q ss_pred CCCCCc---chhhhhCCCcEEEEcccCCCC-----CCCCCCCHHHHHHHHHhcCCCeEEEEccCCCCC
Q 025514 160 VSEIPE---ETYPFLQDCEILIMDALRPDR-----SSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMD 219 (251)
Q Consensus 160 t~~~~e---~~~~~~~~~DlLi~E~~~~~~-----~~~~H~t~~ea~~~a~~~~~k~lvltH~s~~~~ 219 (251)
|++.++ ++.++++|+|+|||||++.++ ..++|+|+++++++|+++++|+++|||+++++.
T Consensus 251 T~~~~~~~~~l~~~a~~aDlLI~Eat~~~~~~~~a~~~gH~t~~~a~~lA~~a~vk~LvLtH~sp~~~ 318 (334)
T PRK02126 251 IGYTEENLARIVELAAGVDLLFIEAVFLDEDAEKARRKNHLTARQAGRLAREAGVKRLLPFHFSPRYQ 318 (334)
T ss_pred CCCCcccHHHHHHHHcCCCEEEEEcccChHHhhhcccCCCCCHHHHHHHHHHcCCCEEEEEecCcccC
Confidence 999864 488999999999999999863 348999999999999999999999999999984
No 10
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.95 E-value=7e-27 Score=200.38 Aligned_cols=178 Identities=28% Similarity=0.508 Sum_probs=135.5
Q ss_pred heeeeeecCcEEEEecCC-----------------------CCCCChhhHhhhccCCCCccEEeCHHHHHHHHHhCCeee
Q 025514 46 LQACLQSSFSTIALFVGF-----------------------LPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLV 102 (251)
Q Consensus 46 ~~~ll~~~~~~iLiD~G~-----------------------Hi~GL~~l~~~~~~~~~~l~iygp~~~~~~l~~~~~~~~ 102 (251)
.|++|+.++..||||||. |+.||..++ + ...++++||+|+++.. +...+..
T Consensus 28 ~s~~i~~~~~~iliD~G~~~~~~~~~~~~id~i~iTH~H~DHi~gl~~l~-~--~~~~~~~v~~~~~~~~-~~~~~~~-- 101 (238)
T TIGR03307 28 CSAVIEFNGARTLIDAGLTDLAERFPPGSLQAILLTHYHMDHVQGLFPLR-W--GVGEPIPVYGPPDEEG-CDDLFKH-- 101 (238)
T ss_pred eEEEEEECCcEEEEECCChhHhhccCccCCCEEEEecCchhhhcchHHHH-H--hcCCceeEEeCchHhh-HHHHhcC--
Confidence 348899999999999994 888887664 3 2357899999998743 2221111
Q ss_pred ecCCCCCCCcccceeEE-Eec-CceeEeCCEEEEEEEeccCCCcceEEEEEc----eEEEeCCCCCCCcchhhhhC--CC
Q 025514 103 DTSGIIPGAAVSELQFN-IID-EEPFTVQDLKITPLPVWHGAGYRSLGFRFG----NICYISDVSEIPEETYPFLQ--DC 174 (251)
Q Consensus 103 ~~~~~~~g~~~~~~~~~-~i~-~~~~~~~~~~I~~~~v~H~~~~~s~gy~i~----~i~Ys~Dt~~~~e~~~~~~~--~~ 174 (251)
++ . ..+. .+. ++++++++++|+++|+.|+. +++||+|+ +++|+|||.++++.++++++ ++
T Consensus 102 ------~~--~--~~~~~~~~~~~~~~~~~~~i~~~~~~H~~--~~~g~~i~~~~~~i~y~gDt~~~~~~~~~~~~~~~~ 169 (238)
T TIGR03307 102 ------PG--I--LDFSKPLEAFEPFDLGGLRVTPLPLVHSK--LTFGYLLETDGQRVAYLTDTAGLPPDTEAFLKNHPL 169 (238)
T ss_pred ------cc--c--ccccccccCCceEEECCEEEEEEecCCCC--cceEEEEecCCcEEEEEecCCCCCHHHHHHHhcCCC
Confidence 11 0 1111 233 47889999999999999987 89999998 89999999987777888886 79
Q ss_pred cEEEEcccCCCC--CCCCCCCHHHHHHHHHhcCCCeEEEEccCCCCChHHHHHHHHhhhhcCCCcEEEeecCeEE
Q 025514 175 EILIMDALRPDR--SSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRV 247 (251)
Q Consensus 175 DlLi~E~~~~~~--~~~~H~t~~ea~~~a~~~~~k~lvltH~s~~~~~~~l~~~l~~~~~~~~~~v~~A~DG~~i 247 (251)
|+||+||++.+. ..++|++++++++++++++++++++||++++++. .+.+ ... ...++.+|+|||+|
T Consensus 170 D~li~e~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~lil~H~~~~~~~-~~~~-~~~----~~~~~~~a~DG~~~ 238 (238)
T TIGR03307 170 DVLILDCSHPPQSDAPRNHNDLTRALAINEQLRPKQVILTHISHQLDA-WLME-NPD----LPSGVAVGYDGQTL 238 (238)
T ss_pred CEEEEeCCcCccccCCCCcCCHHHHHHHHHHcCCCEEEEEecccccch-HHHh-hhh----cCCceEEecccccC
Confidence 999999998653 3478999999999999999999999999987742 1211 111 11369999999985
No 11
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=99.90 E-value=5.9e-23 Score=177.51 Aligned_cols=168 Identities=14% Similarity=0.080 Sum_probs=126.2
Q ss_pred hhhheeeeeecCcEEEEe-cCC------------------------CCCCChhhHh---hhccCCCCccEEeCHHHHHHH
Q 025514 43 KRILQACLQSSFSTIALF-VGF------------------------LPMGLDDLRD---WTNNVQRHIPIYVAMRDFEVM 94 (251)
Q Consensus 43 ~~~~~~ll~~~~~~iLiD-~G~------------------------Hi~GL~~l~~---~~~~~~~~l~iygp~~~~~~l 94 (251)
....+.|+-+...+|||| +|. |++||+.+.. |...+.+|++||+|+++.+.+
T Consensus 7 ~a~~~t~~~~~~~~ilfD~ag~g~~~~l~~k~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g~~~~v 86 (277)
T TIGR02650 7 KAAFFSTIIYSPEEIIFDAAEEGSSTLGGKKVAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKEGNAAE 86 (277)
T ss_pred chhheEEEEECchhheehhhcccchhHHhhhHhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcchhHHH
Confidence 345567788888999999 886 8999976542 333567899999999977766
Q ss_pred HH---hCCeeeecCCCCCCCcccceeEEEecC-ceeEeC----CEEEEEEEeccCC-CcceEEEEEc-------------
Q 025514 95 KK---THYYLVDTSGIIPGAAVSELQFNIIDE-EPFTVQ----DLKITPLPVWHGA-GYRSLGFRFG------------- 152 (251)
Q Consensus 95 ~~---~~~~~~~~~~~~~g~~~~~~~~~~i~~-~~~~~~----~~~I~~~~v~H~~-~~~s~gy~i~------------- 152 (251)
+. .+.. ++.. . ...+.+..+++ +.+... .+.|++|++.|.+ .++|+||.|-
T Consensus 87 e~~~~~~~~-~~~~---~---~~~~~~~~~~~~e~~~~r~~~~~~~V~~f~t~H~v~~~~s~GY~~~~~r~KLK~E~~~l 159 (277)
T TIGR02650 87 EETSEFIKA-ANED---L---FFFFNHHLEEEDERFFLDAAGFFKRVQPFFRKHHASEESFFGHHFEERRKKKEEEFGGD 159 (277)
T ss_pred HHHHHHHHH-hhhh---h---ccCcccCCCCCCcEEEeecCCccEEEecCccccccCccCccCeEEEEEeecchHhHcCC
Confidence 63 1111 1110 0 01233444444 444444 3899999999984 4689999995
Q ss_pred -----------------------eEEEeCCCCCCCcchhhhhCCCcEEEEcccCCCC---CCCCCCCHHHHHHHHHhcCC
Q 025514 153 -----------------------NICYISDVSEIPEETYPFLQDCEILIMDALRPDR---SSSTHFGLPRALEEVRKIQP 206 (251)
Q Consensus 153 -----------------------~i~Ys~Dt~~~~e~~~~~~~~~DlLi~E~~~~~~---~~~~H~t~~ea~~~a~~~~~ 206 (251)
+++|+|||.+++ . ++++|||+|||||+|.+. ..++|++..|++++|+++++
T Consensus 160 ~~~eI~~l~~~gg~~~t~e~~~~~vvysGDT~~~~-~--~~a~~adlLIhEaTf~d~~~~~~~gH~t~~eaa~~A~~a~v 236 (277)
T TIGR02650 160 DKKEARLLKEEGGDDFTREEHHKILLIIGDDLAAD-D--EEEEGGEELIHECCFFDDADDRRKKHAAADDEMEESKKAAG 236 (277)
T ss_pred CHHHHHHHHHhCCccccccccCcEEEEeCCCCCCC-h--HHhcCCCEEEEecccccccccccCCCCCHHHHHHHHHHcCC
Confidence 699999999874 2 889999999999999875 24789999999999999999
Q ss_pred CeEEEEccCCCCCh
Q 025514 207 KRTLFIGMMHLMDH 220 (251)
Q Consensus 207 k~lvltH~s~~~~~ 220 (251)
++++|||+++++..
T Consensus 237 k~LiLtH~Ssry~~ 250 (277)
T TIGR02650 237 KKKIILHHISRRII 250 (277)
T ss_pred CEEEEEeecccccH
Confidence 99999999999843
No 12
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=99.88 E-value=1.7e-23 Score=196.77 Aligned_cols=214 Identities=18% Similarity=0.116 Sum_probs=154.0
Q ss_pred CccceeeeeeccccCCCCCCChhhhheeeeeecCcE-EEEecCC---------------------------------CCC
Q 025514 21 CRRQISVYTSQISLPTSGFFPFKRILQACLQSSFST-IALFVGF---------------------------------LPM 66 (251)
Q Consensus 21 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~ll~~~~~~-iLiD~G~---------------------------------Hi~ 66 (251)
..+=++|||.+..++.- |+..+ +++....+. ||+|||+ |..
T Consensus 442 ~~eIi~LGTGSaiPsky-RNVSS----~lv~i~~~~~IlLDCGEgTlgql~R~YG~~~~~~~lr~LraI~ISHlHADHh~ 516 (746)
T KOG2121|consen 442 DPEIIFLGTGSAIPSKY-RNVSS----ILVRIDSDDSILLDCGEGTLGQLVRHYGVENVDTALRKLRAIFISHLHADHHL 516 (746)
T ss_pred CcEEEEecCCccCCCcc-cceEE----EEEeccCCccEEeecCCchHHHHHHHhhhcchHHHHHhHHHHHHHhhcccccc
Confidence 55668999999999886 77777 888886655 9999997 788
Q ss_pred CChhhHh-hh--c--cCCCCccEEeCHHHHHHHHHhC--CeeeecC-C-CC-CCCcccceeEE-Ee---cCcee-EeCCE
Q 025514 67 GLDDLRD-WT--N--NVQRHIPIYVAMRDFEVMKKTH--YYLVDTS-G-II-PGAAVSELQFN-II---DEEPF-TVQDL 131 (251)
Q Consensus 67 GL~~l~~-~~--~--~~~~~l~iygp~~~~~~l~~~~--~~~~~~~-~-~~-~g~~~~~~~~~-~i---~~~~~-~~~~~ 131 (251)
||..++. |. . ....|+-|.+|+...++++... +.+.... . .. +|...+.-... .. ....+ +.+..
T Consensus 517 Gl~~vL~~r~k~~k~~~~~pl~vv~P~ql~~wl~~y~~~~~~~~~~~~~i~~~g~lf~~~s~~s~~~~~~~~~l~~~~l~ 596 (746)
T KOG2121|consen 517 GLISVLQARTKLLKGVENSPLLVVAPRQLKKWLQEYHRCPSFPASSVAKIGAPGALFAQKSPDSVPERLLSYLLRELGLE 596 (746)
T ss_pred cHHHHHHHHHHhccccccCceEEeChHHHHHHHHHHhcCcccchhhhhhhcCchhhhhccCccccchhhhhHHHHhcCce
Confidence 9887653 42 1 2567999999999999998732 1111100 0 00 12110000000 00 11122 35788
Q ss_pred EEEEEEeccCCCcceEEEEEc-----eEEEeCCCCCCCcchhhhhCCCcEEEEcccCCCC-----CCCCCCCHHHHHHHH
Q 025514 132 KITPLPVWHGAGYRSLGFRFG-----NICYISDVSEIPEETYPFLQDCEILIMDALRPDR-----SSSTHFGLPRALEEV 201 (251)
Q Consensus 132 ~I~~~~v~H~~~~~s~gy~i~-----~i~Ys~Dt~~~~e~~~~~~~~~DlLi~E~~~~~~-----~~~~H~t~~ea~~~a 201 (251)
.|..+++.|-. .+||.+|. +++|+|||+|. +.+++..+|+|+||||||+.+. ...+|+|..||++++
T Consensus 597 ~i~tc~viHCp--~syg~~i~~~~~~Ki~YSGDTrP~-~~~v~~g~datlLIHEAT~ED~l~EeAv~k~HST~sEAi~V~ 673 (746)
T KOG2121|consen 597 SIQTCPVIHCP--QSYGCSITHGSGWKIVYSGDTRPC-EDLVKAGKDATLLIHEATLEDDLEEEAVEKGHSTTSEAISVA 673 (746)
T ss_pred eEEecCcEecC--hhhceeEecccceEEEEcCCCCCc-hhHhhhccCCceEEeehhhchhHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999 99999998 89999999996 5899999999999999999874 458999999999999
Q ss_pred HhcCCCeEEEEccCCCCC-hHHHHHHHHhhhhcCCCcEEEeecCeEEec
Q 025514 202 RKIQPKRTLFIGMMHLMD-HEKVNEELLKLMETEGLDVQLSYDGLRVPV 249 (251)
Q Consensus 202 ~~~~~k~lvltH~s~~~~-~~~l~~~l~~~~~~~~~~v~~A~DG~~i~l 249 (251)
+++++|+++|||||++|. .+ +-.... -.++-+|.|.|.|..
T Consensus 674 ~~m~ar~liLTHFSQRY~K~p-l~~d~~------~~~~~~afd~m~v~~ 715 (746)
T KOG2121|consen 674 KKMNAKRLILTHFSQRYPKVP-LPSDGE------MDPVCVAFDKMAVSV 715 (746)
T ss_pred HhccchhhhhhhhhcccCCCC-CCCccc------cchHHHhhhcceeec
Confidence 999999999999999993 12 211000 013566778887753
No 13
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.79 E-value=2.5e-18 Score=141.77 Aligned_cols=137 Identities=26% Similarity=0.414 Sum_probs=105.8
Q ss_pred CCCCChhhHhhhccCCCCccEEeCHHHHHHHHHh-CCeeeecCCCCCCCcccceeEEEec-CceeEeCCEEEEEEEeccC
Q 025514 64 LPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKT-HYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLKITPLPVWHG 141 (251)
Q Consensus 64 Hi~GL~~l~~~~~~~~~~l~iygp~~~~~~l~~~-~~~~~~~~~~~~g~~~~~~~~~~i~-~~~~~~~~~~I~~~~v~H~ 141 (251)
|+.||+.+........+ +||+|+++.+.+++. +... .. ++. ....+++.+. ++++++++++|+++|+.|.
T Consensus 42 H~~gl~~l~~~~~~~~~--~i~~~~~~~~~l~~~~~~~~--~~--~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~H~ 113 (194)
T PF12706_consen 42 HIAGLPSLIPAWAKHPK--PIYGPPETKEFLREYKFGIL--DL--YPE--EDNFDIIEISPGDEFEIGDFRITPFPANHG 113 (194)
T ss_dssp HHTTHHHHHHHHHHCTT--EEEECHHHHHHHHHHHHTHH--TT--CCT--TSGEEEEEECTTEEEEETTEEEEEEEEESS
T ss_pred ccCChHHHHHHhhcccc--eEEecHHHHHHHHhhhcccc--cc--ccc--ccceeEEEeccCceEEeceEEEEEEecccc
Confidence 88888888765322222 999999999999842 1110 00 011 1235566665 4789999999999999999
Q ss_pred CCcceEE----EEEc----eEEEeCCCCCCCcchhhhhCCCcEEEEcccCCC------CCCCCCCCHHHHHHHHHhcCCC
Q 025514 142 AGYRSLG----FRFG----NICYISDVSEIPEETYPFLQDCEILIMDALRPD------RSSSTHFGLPRALEEVRKIQPK 207 (251)
Q Consensus 142 ~~~~s~g----y~i~----~i~Ys~Dt~~~~e~~~~~~~~~DlLi~E~~~~~------~~~~~H~t~~ea~~~a~~~~~k 207 (251)
. +..+ |+|+ +|+|+|||.+ + ++.++++|+|++||++.. ...+.|++++++.++++++++|
T Consensus 114 ~--~~~~~~~g~~i~~~~~~i~~~gD~~~--~--~~~~~~~D~li~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~ 187 (194)
T PF12706_consen 114 P--PSYGGNKGFVIEPDGKKIFYSGDTNY--D--FEELKNIDLLILECGYIDEEEEPPARGPGHMTLEEALELAKELKAK 187 (194)
T ss_dssp S--CCEEECCEEEEEETTEEEEEETSSSS--C--HHHHTTBSEEEEEBCBSSGGHHCHHCCTTSBBHHHHHHHHHHHTTS
T ss_pred c--cccccCceEEEecCCcceEEeeccch--h--hhhhccCCEEEEeCCCcchhhcccccCCCCCCHHHHHHHHHHcCCC
Confidence 8 6655 9998 8999999998 2 466699999999999984 2458999999999999999999
Q ss_pred eEEEEcc
Q 025514 208 RTLFIGM 214 (251)
Q Consensus 208 ~lvltH~ 214 (251)
+++++|+
T Consensus 188 ~~il~H~ 194 (194)
T PF12706_consen 188 KVILIHF 194 (194)
T ss_dssp EEEEESB
T ss_pred EEEEECC
Confidence 9999996
No 14
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.78 E-value=2.1e-17 Score=140.33 Aligned_cols=173 Identities=13% Similarity=0.125 Sum_probs=128.2
Q ss_pred heeeeeecCcEEEEec---CC-----------------------CCCCChhhHhhhccCCCCccEEeCHHHHHHHHHhCC
Q 025514 46 LQACLQSSFSTIALFV---GF-----------------------LPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHY 99 (251)
Q Consensus 46 ~~~ll~~~~~~iLiD~---G~-----------------------Hi~GL~~l~~~~~~~~~~l~iygp~~~~~~l~~~~~ 99 (251)
.|++|+.++.+||||+ |. |+.|+..+. ....+++|+++++.+.++.. +
T Consensus 9 s~~li~~~~~~iLiDP~~~~~~~~~~~~~~~~id~vliTH~H~DH~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~-~ 82 (228)
T PRK00685 9 SAFLIETGGKKILIDPFITGNPLADLKPEDVKVDYILLTHGHGDHLGDTVEIA-----KRTGATVIANAELANYLSEK-G 82 (228)
T ss_pred eEEEEEECCEEEEECCCCCCCCCCCCChhcCcccEEEeCCCCccccccHHHHH-----HhCCCEEEEeHHHHHHHHhc-C
Confidence 3699999999999997 31 555554432 13468999999887766542 0
Q ss_pred eeeecCCCCCCCcccceeEEEec-CceeEeCCEEEEEEEeccCCCc----------ceEEEEEc----eEEEeCCCCCCC
Q 025514 100 YLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLKITPLPVWHGAGY----------RSLGFRFG----NICYISDVSEIP 164 (251)
Q Consensus 100 ~~~~~~~~~~g~~~~~~~~~~i~-~~~~~~~~~~I~~~~v~H~~~~----------~s~gy~i~----~i~Ys~Dt~~~~ 164 (251)
+ + ++++++ ++++++++++|+++|+.|+... .++||+|+ +|+|+|||++.+
T Consensus 83 --~-----------~--~~~~~~~~~~~~~~~~~i~~~p~~H~~~~~~~~~~~~~~~~~g~~i~~~~~~i~~~GDt~~~~ 147 (228)
T PRK00685 83 --V-----------E--KTHPMNIGGTVEFDGGKVKLTPALHSSSFIDEDGITYLGNPTGFVITFEGKTIYHAGDTGLFS 147 (228)
T ss_pred --C-----------C--ceeeccCCCcEEECCEEEEEEEEEcCCCCcCCCCcccCCCceEEEEEECCeEEEEecCccchh
Confidence 0 0 134444 4678999999999999997621 16999998 999999999876
Q ss_pred cchhhh--hCCCcEEEEcccCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEccCCC----CChHHHHHHHHhhhhcCCCcE
Q 025514 165 EETYPF--LQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHL----MDHEKVNEELLKLMETEGLDV 238 (251)
Q Consensus 165 e~~~~~--~~~~DlLi~E~~~~~~~~~~H~t~~ea~~~a~~~~~k~lvltH~s~~----~~~~~l~~~l~~~~~~~~~~v 238 (251)
+ +..+ ..++|++++.+. ...||+++||+++++++++|+++++|++-. .+.+++.+++++ .+.++
T Consensus 148 ~-~~~~~~~~~~D~~~~~~~-----~~~h~~~~ea~~~~~~~~~k~~v~~H~~~~~~~~~~~~~~~~~~~~----~~~~~ 217 (228)
T PRK00685 148 D-MKLIGELHKPDVALLPIG-----DNFTMGPEDAALAVELIKPKIVIPMHYNTFPLIEQDPEKFKALVEG----LGTKV 217 (228)
T ss_pred H-HHHHHHhhCCCEEEEecC-----CccccCHHHHHHHHHhhCCCEEEEeccCCCcCCcCCHHHHHHHHHh----cCCcE
Confidence 3 3333 357999998653 246999999999999999999999999742 235566666654 34589
Q ss_pred EEeecCeEEec
Q 025514 239 QLSYDGLRVPV 249 (251)
Q Consensus 239 ~~A~DG~~i~l 249 (251)
.+++||+.++|
T Consensus 218 ~~~~~G~~~~~ 228 (228)
T PRK00685 218 VILKPGESIEL 228 (228)
T ss_pred EECCCCCEeeC
Confidence 99999999875
No 15
>PRK04286 hypothetical protein; Provisional
Probab=99.77 E-value=6.4e-18 Score=149.62 Aligned_cols=198 Identities=16% Similarity=0.175 Sum_probs=128.9
Q ss_pred heeeeeecCcEEEEecCC--------------------------------------------CCCCChhhHhhh-ccCCC
Q 025514 46 LQACLQSSFSTIALFVGF--------------------------------------------LPMGLDDLRDWT-NNVQR 80 (251)
Q Consensus 46 ~~~ll~~~~~~iLiD~G~--------------------------------------------Hi~GL~~l~~~~-~~~~~ 80 (251)
.|++|++++.+||||+|. |+.|+..++ |. ..+..
T Consensus 16 ~~~~I~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~id~IliTH~H~DHi~g~~~~~-y~~~~~~~ 94 (298)
T PRK04286 16 MATFVETKDVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHYHYDHHTPFYEDP-YELSDEEI 94 (298)
T ss_pred eEEEEEECCeEEEEcCCCCcCccccCCCCcchhHHHHHHHHHHhhcccccCCEEEecCCccccCCCccccc-cccccccc
Confidence 568999999999999991 776665542 32 13455
Q ss_pred CccEEeCHHHHHH-HHHhCCe--eeecCCCCCCCc-ccceeEEEecCceeEeCCEEEEEE-EeccCCCcceEEEEE----
Q 025514 81 HIPIYVAMRDFEV-MKKTHYY--LVDTSGIIPGAA-VSELQFNIIDEEPFTVQDLKITPL-PVWHGAGYRSLGFRF---- 151 (251)
Q Consensus 81 ~l~iygp~~~~~~-l~~~~~~--~~~~~~~~~g~~-~~~~~~~~i~~~~~~~~~~~I~~~-~v~H~~~~~s~gy~i---- 151 (251)
++++|++..++.. ..+.... .+... .+.... .........+++++.+++++|++. +++|+....++||++
T Consensus 95 ~i~iy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~g~~~~ig~~~V~~~~~v~H~~~~~~~Gy~i~~ri 173 (298)
T PRK04286 95 PKEIYKGKIVLIKDPTENINWSQRRRAP-RFLKAVKDIAKKIEYADGKTFRFGGTTIEFSPPVPHGADGSKLGYVIMVRI 173 (298)
T ss_pred hHHHhcCceecccCHHHHcCHHHHhhHH-hHHHHHHhcCCceEECCCCEEEECCEEEEEeccCCCCCCCCccceEEEEEE
Confidence 7889988776521 1110100 00000 000000 000111222357899999999966 899986214666654
Q ss_pred c----eEEEeCCCC-CCCcchhhhhC--CCcEEEEccc--CCC--C--CCCCCCCHHHHHHHHHhcCCCeEEEE-ccCCC
Q 025514 152 G----NICYISDVS-EIPEETYPFLQ--DCEILIMDAL--RPD--R--SSSTHFGLPRALEEVRKIQPKRTLFI-GMMHL 217 (251)
Q Consensus 152 ~----~i~Ys~Dt~-~~~e~~~~~~~--~~DlLi~E~~--~~~--~--~~~~H~t~~ea~~~a~~~~~k~lvlt-H~s~~ 217 (251)
+ +++|+|||+ ..++++.++++ ++|+|++++. +.. + ...+|++.+.+.++++. ++|+++|+ |+|+.
T Consensus 174 ~~gg~~~~~~gDt~~~~~~~~~~~l~~~d~dlLi~~~~p~~lk~~ri~~~~~h~s~~~~~~l~~~-~~k~liLtHHls~~ 252 (298)
T PRK04286 174 SDGDESFVFASDVQGPLNDEAVEFILEKKPDVVIIGGPPTYLLGRRLSEEDLEKGIENLEEIVKN-TPETLILDHHLLRD 252 (298)
T ss_pred EeCCEEEEEECCCCCCCCHHHHHHHhcCCCCEEEeCCcchhhhhhhhccccHHHHHHHHHHHHhc-CCCEEEEecccccc
Confidence 4 899999999 66678888887 9999999994 332 1 23567777777777777 99999999 99999
Q ss_pred CChHHHHHHHHhhhhcCCCcEEEeecCeE
Q 025514 218 MDHEKVNEELLKLMETEGLDVQLSYDGLR 246 (251)
Q Consensus 218 ~~~~~l~~~l~~~~~~~~~~v~~A~DG~~ 246 (251)
+++.++.+++.+.++..+..+..|-|-|-
T Consensus 253 ~n~~~~~~~l~~~~~~~~~~~~~~~~~~~ 281 (298)
T PRK04286 253 KNYREKLKELYERAEDRGVRVLTAAEFLG 281 (298)
T ss_pred CCcHHHHHHHHHHHhhcCceEEeHHHHcC
Confidence 99988887776544444455666665553
No 16
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.60 E-value=3.3e-14 Score=131.71 Aligned_cols=158 Identities=15% Similarity=0.119 Sum_probs=112.8
Q ss_pred heeeeeecCcEEEEecCC--------------------------------------CCCCChhhHhhhccCCCCccEEeC
Q 025514 46 LQACLQSSFSTIALFVGF--------------------------------------LPMGLDDLRDWTNNVQRHIPIYVA 87 (251)
Q Consensus 46 ~~~ll~~~~~~iLiD~G~--------------------------------------Hi~GL~~l~~~~~~~~~~l~iygp 87 (251)
+|++++.++..+|||||. |+.||+.+... ...++||++
T Consensus 15 n~~ll~~~~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~~~~~~i~~I~iTH~H~DHiggl~~l~~~----~~~~~Vy~~ 90 (422)
T TIGR00649 15 NMYVVEIDDDVFIFDAGILFPEDAMLGVDGVIPDFSYLQENQDKVKGIFITHGHEDHIGAVPYLFHT----VGFPPIYGT 90 (422)
T ss_pred eEEEEEECCeEEEEeCCCCCCcccccCCccccCCHHHHHhccccCCEEEECCCChHHhCcHHHHHHh----CCCCeEEeC
Confidence 579999999999999994 66676665421 124689999
Q ss_pred HHHHHHHHHhCCeeeecCCCCCCCcccceeEEEec-CceeEeC-CEEEEEEEeccCCCcceEEEEEc----eEEEeCCCC
Q 025514 88 MRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQ-DLKITPLPVWHGAGYRSLGFRFG----NICYISDVS 161 (251)
Q Consensus 88 ~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~i~-~~~~~~~-~~~I~~~~v~H~~~~~s~gy~i~----~i~Ys~Dt~ 161 (251)
+.+.+.++..+.. ... .. ...++.++ +++++++ +++|+++++.|+. ..++||+|+ +++|+||+.
T Consensus 91 ~~t~~~l~~~~~~-~~~----~~----~~~~~~~~~~~~~~ig~~~~v~~~~~~H~~-p~s~g~~i~~~~~~ivytGD~~ 160 (422)
T TIGR00649 91 PLTIALIKSKIKE-NKL----NV----RTDLLEIHEGEPIETGENHTIEFIRITHSI-PDSVGFALHTPLGYIVYTGDFK 160 (422)
T ss_pred HHHHHHHHHHHHh-cCC----CC----CCceEEeCCCCEEEeCCceEEEEEECCCCC-cceEEEEEEeCCcEEEECCCcC
Confidence 9998888764321 000 00 12245555 4789996 5999999999986 269999996 899999996
Q ss_pred CC-------Ccc---hhhhh-CCCcEEEEcccCCCC---CCCCCCCHHHHHHHHHhcCCCeEEEEccCCCC
Q 025514 162 EI-------PEE---TYPFL-QDCEILIMDALRPDR---SSSTHFGLPRALEEVRKIQPKRTLFIGMMHLM 218 (251)
Q Consensus 162 ~~-------~e~---~~~~~-~~~DlLi~E~~~~~~---~~~~H~t~~ea~~~a~~~~~k~lvltH~s~~~ 218 (251)
.- +.+ +.+.. +++|+||+|+|+... ....|...+++.+++++++ ++++++|++...
T Consensus 161 ~~~~~~~~~~~d~~~l~~~~~~g~d~Li~EsT~~~~~~~~~~e~~~~~~i~~~~~~~~-~~viv~~fa~~~ 230 (422)
T TIGR00649 161 FDNTPVIGEPPDLNRIAEYGKKGVLLLISDSTNVENPGFTPSEAKVLEQLNDIFKNAK-GRVIVATFASNI 230 (422)
T ss_pred CCCCccCCcccCHHHHHhhcccCeEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHhCC-CEEEEEEccccH
Confidence 41 111 22222 579999999998853 2356788888888887775 569999999654
No 17
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=99.55 E-value=5.8e-14 Score=122.61 Aligned_cols=85 Identities=26% Similarity=0.411 Sum_probs=66.7
Q ss_pred ceEEEEEc----eEEEeCCCCCCCcchhhhhC---CCcEEEEcccCCCC-CCCCCCCHHHHHHHHHhcCCCeEEEEccCC
Q 025514 145 RSLGFRFG----NICYISDVSEIPEETYPFLQ---DCEILIMDALRPDR-SSSTHFGLPRALEEVRKIQPKRTLFIGMMH 216 (251)
Q Consensus 145 ~s~gy~i~----~i~Ys~Dt~~~~e~~~~~~~---~~DlLi~E~~~~~~-~~~~H~t~~ea~~~a~~~~~k~lvltH~s~ 216 (251)
.+.||+.+ .++|.+||..+++.....+. ..++++.++.+.+. ...+|+++++|.+++++.++||++|||+++
T Consensus 158 ~~~g~~~~~~~~~vay~~Dt~~~~~~~d~~l~~~~~~~~~~~~~~~~~~gh~~~h~~~~~a~~~~~~~~~~rivLtHls~ 237 (269)
T COG1235 158 TDIGYGLEWRIGDVAYLTDTELFPSNHDVELLDNGLYPLDIKDRILPDPGHLSNHLSAEEALELIEKLKPKRLVLTHLSH 237 (269)
T ss_pred ccceeeeeeeeccEEEccccccCcchhHHHHhcCCccceeeeeccccccCCCCCchhHHHHHHHHHhCCcceEEEEecCC
Confidence 45666654 89999999988765554554 46777778887765 358999999999999999999999999999
Q ss_pred CCChHHHHHHHHh
Q 025514 217 LMDHEKVNEELLK 229 (251)
Q Consensus 217 ~~~~~~l~~~l~~ 229 (251)
.++++++.++.+.
T Consensus 238 ~~~~~~~~~~~~~ 250 (269)
T COG1235 238 KNDDEELPELEAE 250 (269)
T ss_pred CCCHHHHhhhhhh
Confidence 9987666554443
No 18
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=99.36 E-value=1.6e-10 Score=104.59 Aligned_cols=133 Identities=14% Similarity=0.107 Sum_probs=94.1
Q ss_pred CCccEEeCHHHHHHHHHhCCeeeecCCCCCCCcccceeEEEec-CceeEeCCEEEEEEEeccC-----------C-----
Q 025514 80 RHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLKITPLPVWHG-----------A----- 142 (251)
Q Consensus 80 ~~l~iygp~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~i~-~~~~~~~~~~I~~~~v~H~-----------~----- 142 (251)
.++.+++|.++.+.+... | .+..++.+++ ++++++++++|+++|+.|. .
T Consensus 137 ~~~~~v~p~~~~~~~~~~------------G--vp~~rv~~v~~Ge~i~ig~v~It~lpa~h~~~~i~~p~~h~~~~~~~ 202 (355)
T PRK11709 137 DHVKFIGPQACVDLWIGW------------G--VPKERCIVVKPGDVVKVKDIKIHALDSFDRTALVTLPADGKAAGGVL 202 (355)
T ss_pred CCcEEEEcHHHHHHHHhc------------C--CCcceEEEecCCCcEEECCEEEEEEeccccccccccccccccccccc
Confidence 356688888776544331 0 1112345555 4789999999999999552 1
Q ss_pred ----CcceEEEEEc----eEEEeCCCCCCCcchhhhhC--CCcEEEEcccCCCCCCCCCCCHHHHHHHHHhcCCCeEEEE
Q 025514 143 ----GYRSLGFRFG----NICYISDVSEIPEETYPFLQ--DCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFI 212 (251)
Q Consensus 143 ----~~~s~gy~i~----~i~Ys~Dt~~~~e~~~~~~~--~~DlLi~E~~~~~~~~~~H~t~~ea~~~a~~~~~k~lvlt 212 (251)
...++||+|+ +|.|+|||++++ .+.+..+ ++|++++...-.......||+++||+++++.+++|+++.+
T Consensus 203 ~~d~~~~~~gyvie~~~~tvy~sGDT~~~~-~~~~i~~~~~iDvall~iG~~p~~~~~hm~p~ea~~~a~~l~ak~vIpi 281 (355)
T PRK11709 203 PDDMDRRAVNYLFKTPGGNIYHSGDSHYSN-YFAKHGNDHQIDVALGSYGENPRGITDKMTSIDILRMAESLNAKVVIPV 281 (355)
T ss_pred cccCCcceEEEEEEeCCeEEEEeCCCCccH-HHHHHHhcCCCCEEEecCCCCCCCCcCCCCHHHHHHHHHHcCCCEEEEE
Confidence 1257999997 999999999874 4555554 5999998664322234579999999999999999999999
Q ss_pred ccCCCC----ChHHHHHHH
Q 025514 213 GMMHLM----DHEKVNEEL 227 (251)
Q Consensus 213 H~s~~~----~~~~l~~~l 227 (251)
|+.-.. +.+++.+..
T Consensus 282 H~dtf~~~~~dp~~~~~~~ 300 (355)
T PRK11709 282 HHDIWSNFQADPQEILVLW 300 (355)
T ss_pred ChhhccccccCHHHHHHHH
Confidence 996632 455665443
No 19
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=99.19 E-value=9.7e-10 Score=98.27 Aligned_cols=165 Identities=16% Similarity=0.284 Sum_probs=102.7
Q ss_pred CCccEEeCHHHHHHHHH-hCCeeeecCCCCCCCc--ccceeEEEecC-c--e-----eEe------CCEEEEEEEeccCC
Q 025514 80 RHIPIYVAMRDFEVMKK-THYYLVDTSGIIPGAA--VSELQFNIIDE-E--P-----FTV------QDLKITPLPVWHGA 142 (251)
Q Consensus 80 ~~l~iygp~~~~~~l~~-~~~~~~~~~~~~~g~~--~~~~~~~~i~~-~--~-----~~~------~~~~I~~~~v~H~~ 142 (251)
.+-+|||-+.|++.|++ .|+...++.....+.. ....++..++. + + .++ .++.++++++.|+.
T Consensus 109 ~~K~i~gl~~ti~alk~hiFN~~iWPNl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~~v~~~~l~H~~ 188 (335)
T PF02112_consen 109 SPKTIYGLPSTIEALKNHIFNDIIWPNLSDEGEGDYLYKYRYFDLSPGELIPLNNTTLSVIPNEFPNSSSVTPFPLSHGN 188 (335)
T ss_pred CCCcEEECHHHHHHHHHcccCCccCCCCCCcCcccceeeeeeeeccccceeeccccccccccccccccccceeeecCCCC
Confidence 67889999999999997 4655443221111100 00112222221 1 1 111 24667889999987
Q ss_pred Cc----ceEEEEEc------eEEEeCCCCCC-------CcchhhhhC------CCcEEEEcccCCCC----CCCCCCCHH
Q 025514 143 GY----RSLGFRFG------NICYISDVSEI-------PEETYPFLQ------DCEILIMDALRPDR----SSSTHFGLP 195 (251)
Q Consensus 143 ~~----~s~gy~i~------~i~Ys~Dt~~~-------~e~~~~~~~------~~DlLi~E~~~~~~----~~~~H~t~~ 195 (251)
.. .+-+|.|+ .|+|.|||++= -+++|+.+. ...-+++||+|.+. .-.|||++.
T Consensus 189 ~~~~~~~SsAfli~~~~t~~~il~fGD~e~Ds~s~~~~~~~iW~~~ap~I~~~~LkaI~IEcS~~~~~~d~~LyGHLtP~ 268 (335)
T PF02112_consen 189 SVSSPVYSSAFLIRDNITGDEILFFGDTEPDSVSKSPRNQKIWRYAAPKIASGKLKAIFIECSYPNSQPDSQLYGHLTPK 268 (335)
T ss_pred cccCCCcceEEEEEeCCCCCEEEEEeCCCCCccccCchHHHHHHHHHhhccccccCEEEEEeCCCCCCCchHhhccCCHH
Confidence 21 37999998 79999999861 135666654 47789999999874 238999999
Q ss_pred HHHHHHHhcCC-----------CeEEEEccCCCCC----h-HHHHHHHHhhhh--cCCCcEEEeecC
Q 025514 196 RALEEVRKIQP-----------KRTLFIGMMHLMD----H-EKVNEELLKLME--TEGLDVQLSYDG 244 (251)
Q Consensus 196 ea~~~a~~~~~-----------k~lvltH~s~~~~----~-~~l~~~l~~~~~--~~~~~v~~A~DG 244 (251)
..++.++.+.. =+||.+|+.+... . ..+..+++++.+ ..|.++.+|..|
T Consensus 269 ~Li~EL~~L~~~~~~~~~~L~gL~VIItHIK~~~~~~~dpr~~Il~il~qL~~~n~LGv~fii~~QG 335 (335)
T PF02112_consen 269 HLIEELKVLASKVGQTSPPLKGLNVIITHIKPSLNDGPDPRDVILEILRQLAEENNLGVNFIIPEQG 335 (335)
T ss_pred HHHHHHHHHHhccccccCCCCCCeEEEEEeCCcccCCCChHHHHHHHHHHHHhccCCceEEEEcCCC
Confidence 88887665521 1699999999763 2 123333443322 234566666654
No 20
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=98.98 E-value=1.4e-08 Score=96.23 Aligned_cols=173 Identities=16% Similarity=0.105 Sum_probs=115.6
Q ss_pred ceeeeeeccccCCCCCCChhhhheeeeeecCcEEEEecCC--------------------------------------CC
Q 025514 24 QISVYTSQISLPTSGFFPFKRILQACLQSSFSTIALFVGF--------------------------------------LP 65 (251)
Q Consensus 24 ~~~~~~s~~~~~~~~~~~~~~~~~~ll~~~~~~iLiD~G~--------------------------------------Hi 65 (251)
.+.+..-||..--+ .+++.++++++.++||||- |+
T Consensus 8 ~i~i~~lGG~~EiG-------kN~~vve~~~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n~~kvkgI~lTHgHeDHI 80 (555)
T COG0595 8 KIKIFALGGVGEIG-------KNMYVVEYGDDIIILDAGLKFPEDDLLGVDLIIPDFSYLEENKDKVKGIFLTHGHEDHI 80 (555)
T ss_pred ceEEEEecChhhhc-------cceEEEEECCcEEEEECccccCccccccccEEecChHHhhhccccceEEEecCCchhhc
Confidence 45566666665332 3578999999999999994 88
Q ss_pred CCChhhHhhhccCCCCccEEeCHHHHHHHHHhCCeeeecCCCCCCCcccceeEEEecC-ceeEeCCEEEEEEEeccCCCc
Q 025514 66 MGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDE-EPFTVQDLKITPLPVWHGAGY 144 (251)
Q Consensus 66 ~GL~~l~~~~~~~~~~l~iygp~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~i~~-~~~~~~~~~I~~~~v~H~~~~ 144 (251)
+|++.|..- ...++||+++-+...++..+... ... ....++++++. ..+++++++|+++++.|+. -
T Consensus 81 Gaip~ll~~----~~~~piy~s~lt~~Li~~k~~~~-~~~-------~~~~~~~ev~~~~~i~~~~~~v~f~~vtHSI-P 147 (555)
T COG0595 81 GALPYLLKQ----VLFAPIYASPLTAALIKEKLKEH-GLF-------KNENELHEVKPGSEIKFGSFEVEFFPVTHSI-P 147 (555)
T ss_pred cchHHHHhc----CCcCceecCHhhHHHHHHHHHHh-ccc-------cccCceEEeCCCCeEEeCcEEEEEEeecccC-c
Confidence 888887631 22399999999999888754311 000 01134667654 6789999999999999999 3
Q ss_pred ceEEEEEc----eEEEeCCCCC----CC---cch---hhhhC-CCcEEEEcccCCCCCCCC---CCCHHHHHHHHHhcCC
Q 025514 145 RSLGFRFG----NICYISDVSE----IP---EET---YPFLQ-DCEILIMDALRPDRSSST---HFGLPRALEEVRKIQP 206 (251)
Q Consensus 145 ~s~gy~i~----~i~Ys~Dt~~----~~---e~~---~~~~~-~~DlLi~E~~~~~~~~~~---H~t~~ea~~~a~~~~~ 206 (251)
+++||.++ .++|+||... .. .++ .+..+ |+++||+|+|....+... |.-.+.+.++.+.++
T Consensus 148 ds~g~~i~Tp~G~Iv~TGDFk~d~~~~~g~~~d~~r~~~~g~eGVl~LisdsTna~~pg~t~SE~~v~~~l~~i~~~a~- 226 (555)
T COG0595 148 DSLGIVIKTPEGNIVYTGDFKFDPTPVDGEPTDLARLAEIGKEGVLALISDSTNAENPGFTPSESEVGENLEDIIRNAK- 226 (555)
T ss_pred cceEEEEECCCccEEEeCCEEecCCcCCCCcCCHHHHHHhccCCcEEEEeCCcccCCCCCCCCHHHHHHHHHHHHHhCC-
Confidence 69999998 8999999842 11 112 22233 599999999988643222 223333344444442
Q ss_pred CeEEEEccCCC
Q 025514 207 KRTLFIGMMHL 217 (251)
Q Consensus 207 k~lvltH~s~~ 217 (251)
.|++++=++..
T Consensus 227 grVIv~tfaSn 237 (555)
T COG0595 227 GRVIVTTFASN 237 (555)
T ss_pred CcEEEEEchhh
Confidence 35666665553
No 21
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=98.89 E-value=3.2e-08 Score=95.85 Aligned_cols=145 Identities=21% Similarity=0.159 Sum_probs=88.2
Q ss_pred heeeeeecCcEEEEecCC----------------------------------CCCCChhhHhhhccCCCCccEEeCHHHH
Q 025514 46 LQACLQSSFSTIALFVGF----------------------------------LPMGLDDLRDWTNNVQRHIPIYVAMRDF 91 (251)
Q Consensus 46 ~~~ll~~~~~~iLiD~G~----------------------------------Hi~GL~~l~~~~~~~~~~l~iygp~~~~ 91 (251)
+|++|+.++.+||||||. |++||+.|..+ +...+||+.+.|.
T Consensus 189 Sc~Ll~~~~~~ILIDcG~~~~~~~~~~~p~l~~~~~~~~~IDaVlITHaH~DHiG~LP~L~k~----g~~gpIY~T~pT~ 264 (630)
T TIGR03675 189 SALLLSTPESRILLDCGVNVGANGDNAYPYLDVPEFQLDELDAVVITHAHLDHSGLVPLLFKY----GYDGPVYCTPPTR 264 (630)
T ss_pred CEEEEEECCCEEEEECCCCccccchhhcccccccCCCHHHCcEEEECCCCHHHHhhHHHHHHh----CCCCceeecHHHH
Confidence 479999999999999994 66666665533 1235799999887
Q ss_pred HHHHHhC-Cee--eecCC---CCCCCcc-cc-eeEEEec-CceeEe-CCEEEEEEEeccCCCcceEEE--EEc----eEE
Q 025514 92 EVMKKTH-YYL--VDTSG---IIPGAAV-SE-LQFNIID-EEPFTV-QDLKITPLPVWHGAGYRSLGF--RFG----NIC 155 (251)
Q Consensus 92 ~~l~~~~-~~~--~~~~~---~~~g~~~-~~-~~~~~i~-~~~~~~-~~~~I~~~~v~H~~~~~s~gy--~i~----~i~ 155 (251)
+.+...+ .+. ..... .+..... .. -.+..++ ++++++ ++++|+++++.|.. .+..+ .+. +++
T Consensus 265 ~l~~~ll~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~yg~~~~i~~~i~vt~~~AGHil--Gsa~~~~~i~dg~~~Iv 342 (630)
T TIGR03675 265 DLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIAPDIKLTFYNAGHIL--GSAIAHLHIGDGLYNIV 342 (630)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccEEeCCCCeEEecCCEEEEEecCcccc--CceEEEEEECCCCEEEE
Confidence 6543211 000 00000 0000000 00 1234444 367887 58999999999987 45444 442 799
Q ss_pred EeCCCCCCCcchhh----hhCCCcEEEEcccCCCCCCCCCCCHHHH
Q 025514 156 YISDVSEIPEETYP----FLQDCEILIMDALRPDRSSSTHFGLPRA 197 (251)
Q Consensus 156 Ys~Dt~~~~e~~~~----~~~~~DlLi~E~~~~~~~~~~H~t~~ea 197 (251)
|+||.++..+.+++ ...++|+||+|+||.+.. .-|.+-.++
T Consensus 343 YTGD~~~~~~~ll~~a~~~~~~vD~LI~ESTYg~~~-~~~~~r~~~ 387 (630)
T TIGR03675 343 YTGDFKYEKTRLLDPAVNKFPRVETLIMESTYGGRD-DYQPSREEA 387 (630)
T ss_pred EeCCCCCCCCcCccchhhcCCCCCEEEEeCccCCCC-CCCCCHHHH
Confidence 99999875433333 235799999999998632 224444433
No 22
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=98.79 E-value=1.3e-07 Score=76.42 Aligned_cols=145 Identities=12% Similarity=0.064 Sum_probs=91.4
Q ss_pred hheeeeeecCcEEEEecCC-----------------------------CCCCChhhHhhhccCCCCccEEeCHHHHHHHH
Q 025514 45 ILQACLQSSFSTIALFVGF-----------------------------LPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMK 95 (251)
Q Consensus 45 ~~~~ll~~~~~~iLiD~G~-----------------------------Hi~GL~~l~~~~~~~~~~l~iygp~~~~~~l~ 95 (251)
..|++|+.++..+|||||. |+.|++.+... ..++||+++.+.+.++
T Consensus 6 ~~~~li~~~~~~iliD~g~~~~~~~~~~l~~~~~~~i~~i~iTH~H~DH~~g~~~~~~~-----~~~~i~~~~~~~~~~~ 80 (183)
T smart00849 6 VNSYLVEGDGGAILIDTGPGEAEDLLAELKKLGPKDIDAIILTHGHPDHIGGLPELLEA-----PGAPVYAPEGTAELLK 80 (183)
T ss_pred eeEEEEEeCCceEEEeCCCChhHHHHHHHHHcCchhhcEEEecccCcchhccHHHHHhC-----CCCcEEEchhhhHHHh
Confidence 3569999999999999994 77777665532 4678999999988776
Q ss_pred HhCCeeeecCCCCCCCcccceeEEEec-CceeEeCCEEEEEEEe-ccCCCcceEEEEEc--eEEEeCCCCCCCcchhhhh
Q 025514 96 KTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLKITPLPV-WHGAGYRSLGFRFG--NICYISDVSEIPEETYPFL 171 (251)
Q Consensus 96 ~~~~~~~~~~~~~~g~~~~~~~~~~i~-~~~~~~~~~~I~~~~v-~H~~~~~s~gy~i~--~i~Ys~Dt~~~~e~~~~~~ 171 (251)
+......... ... .....+..++ ++++++++.+++.+++ .|.. .+++|.++ +++|+||+....+ .
T Consensus 81 ~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~~~~~~~~~~~vl~~gD~~~~~~-~---- 149 (183)
T smart00849 81 DLLKLGGALG-AEA---PPPPPDRTLKDGEELDLGGLELEVIHTPGHTP--GSIVLYLPEGKILFTGDLLFSGG-I---- 149 (183)
T ss_pred ccchhccccC-cCC---CCCccceecCCCCEEEeCCceEEEEECCCCCC--CcEEEEECCCCEEEECCeeeccC-C----
Confidence 5322100000 000 0112234444 4789998888888877 4555 77889998 7999999987543 2
Q ss_pred CCCcEEEEcccCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEc
Q 025514 172 QDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIG 213 (251)
Q Consensus 172 ~~~DlLi~E~~~~~~~~~~H~t~~ea~~~a~~~~~k~lvltH 213 (251)
...........+..+.++.+.+.+.+.+.++..|
T Consensus 150 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~H 183 (183)
T smart00849 150 --------GRTDDDGGDASASDSLESLLKLLALDPELVVPGH 183 (183)
T ss_pred --------CCcccCCCCccHHHHHHHHHHhhcCCccEeecCC
Confidence 1111112334455555666666666666665554
No 23
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=98.68 E-value=8.9e-07 Score=75.96 Aligned_cols=170 Identities=21% Similarity=0.282 Sum_probs=111.8
Q ss_pred cCCCCccEEeCHHHHHHHHH-hCCeeeecCCCCCCCcccceeEEEecC---ceeEeCCEEEEEEEeccCC--Ccce--EE
Q 025514 77 NVQRHIPIYVAMRDFEVMKK-THYYLVDTSGIIPGAAVSELQFNIIDE---EPFTVQDLKITPLPVWHGA--GYRS--LG 148 (251)
Q Consensus 77 ~~~~~l~iygp~~~~~~l~~-~~~~~~~~~~~~~g~~~~~~~~~~i~~---~~~~~~~~~I~~~~v~H~~--~~~s--~g 148 (251)
...++=+|||-+.+++.+++ .|+++.++.....| ...+++..+++ ..+.+-.+++.|||++|+. +.|. -.
T Consensus 137 ~~qkkkTI~gl~~tIDvL~khvFN~lvWP~lt~~g--s~~~~~qvv~P~~~~slt~t~l~~~pfpv~Hg~ktG~p~ySs~ 214 (356)
T COG5212 137 SKQKKKTIYGLADTIDVLRKHVFNWLVWPNLTDSG--SGTYRMQVVRPAQSLSLTLTRLTGEPFPVSHGKKTGSPSYSSM 214 (356)
T ss_pred cccCCceEEechhHHHHHHHHhhcccccCCccccc--CceEEEEEeChhHeeeeeeeeecceeeeccCCcccCCcccceE
Confidence 35678899999999999988 46666543322222 12456677765 3455667899999999986 2344 56
Q ss_pred EEEc------eEEEeCCCCCCC-------cchhhhh------CCCcEEEEcccCCCCC----CCCCCCHHHHHHHHHhcC
Q 025514 149 FRFG------NICYISDVSEIP-------EETYPFL------QDCEILIMDALRPDRS----SSTHFGLPRALEEVRKIQ 205 (251)
Q Consensus 149 y~i~------~i~Ys~Dt~~~~-------e~~~~~~------~~~DlLi~E~~~~~~~----~~~H~t~~ea~~~a~~~~ 205 (251)
|.|. -|+|.||+++=. +.+|..+ +..--+++||++++.. -.|||++.-.+.......
T Consensus 215 ~lfr~nkS~~~f~~fGDvepD~vese~ll~~~Wr~~ae~I~q~~LkgiliEcS~P~~~~~~~LfGH~~P~~L~nEL~~L~ 294 (356)
T COG5212 215 LLFRSNKSNEFFAYFGDVEPDDVESEKLLDTVWRKLAEKITQQQLKGILIECSYPNDVADNKLFGHMTPTWLLNELKKLE 294 (356)
T ss_pred EEEecCCCcceEEEecCCCcchhhhhHHHHHHHHHHHHhhhHHhhCceEEEecCCCCCChhHhhcccChHHHHHHHHHHH
Confidence 7776 599999998621 1234333 2356789999998752 379999988877665542
Q ss_pred ----------CCeEEEEccCCCC----Ch-HHHHHHHHhhhhcC---CCcEEEeecCeEEe
Q 025514 206 ----------PKRTLFIGMMHLM----DH-EKVNEELLKLMETE---GLDVQLSYDGLRVP 248 (251)
Q Consensus 206 ----------~k~lvltH~s~~~----~~-~~l~~~l~~~~~~~---~~~v~~A~DG~~i~ 248 (251)
--.+++||+.+.. ++ ..+.++++-.+++- +.++.++..|....
T Consensus 295 ~l~~s~~~l~gL~vviTHiKs~p~q~~~pr~~ILeeL~fLae~~nl~~~~f~i~~~G~~~k 355 (356)
T COG5212 295 QLSGSGQPLKGLPVVITHIKSSPQQGQDPRKLILEELQFLAEQGNLMGIEFIIMEQGDSQK 355 (356)
T ss_pred HHhccCCCCCCccEEEEeccCcccccCCHHHHHHHHHHHHHhcCCccceEEEeeecccccc
Confidence 1368999998865 23 33456666433321 23567888887643
No 24
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=1.1e-06 Score=81.57 Aligned_cols=146 Identities=16% Similarity=0.063 Sum_probs=92.8
Q ss_pred heeeeeecCcEEEEecCC-----------------------------CCCCChhhHhhhccCCCCccEEeCHHHHHHHHH
Q 025514 46 LQACLQSSFSTIALFVGF-----------------------------LPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKK 96 (251)
Q Consensus 46 ~~~ll~~~~~~iLiD~G~-----------------------------Hi~GL~~l~~~~~~~~~~l~iygp~~~~~~l~~ 96 (251)
.|.+|+.++..||+|||. |+.+|+.+.. ..-..+||+.+.|.+..+-
T Consensus 15 s~~~l~~~~~~il~D~G~~~~~~~~~~p~~~~~~~vDavllTHaHlDH~g~lp~l~~----~~~~~~v~aT~~T~~l~~~ 90 (427)
T COG1236 15 SCVLLETGGTRILLDCGLFPGDPSPERPLLPPFPKVDAVLLTHAHLDHIGALPYLVR----NGFEGPVYATPPTAALLKV 90 (427)
T ss_pred EEEEEEECCceEEEECCCCcCcCCccCCCCCCCCCcCEEEeccCchhhhcccHHHHH----hccCCceeeccCHHHHHHH
Confidence 469999999999999996 3334433321 1123889999999876643
Q ss_pred hCCeeeec---CC--CCC--CCcccceeEEEecC-ceeEeCCEEEEEEEeccCCCcceEEEEEc----eEEEeCCCCCCC
Q 025514 97 THYYLVDT---SG--IIP--GAAVSELQFNIIDE-EPFTVQDLKITPLPVWHGAGYRSLGFRFG----NICYISDVSEIP 164 (251)
Q Consensus 97 ~~~~~~~~---~~--~~~--g~~~~~~~~~~i~~-~~~~~~~~~I~~~~v~H~~~~~s~gy~i~----~i~Ys~Dt~~~~ 164 (251)
.+.-.... .. .+. ......-..+.++. +++++++++|+++++-|-. .+-+|.++ +++|+||.....
T Consensus 91 ~l~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~~~~v~~~~AGHil--Gsa~~~le~~~~~ilytGD~~~~~ 168 (427)
T COG1236 91 LLGDSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVEVGGVKVTFYNAGHIL--GSAAILLEVDGGRILYTGDVKRRK 168 (427)
T ss_pred HHHHHHhhhcCCCCCCCchhHHHhhHhhEEEecCCCceEeeeEEEEEecCCCcc--ceeEEEEEeCCceEEEEeccCCCc
Confidence 21110000 00 000 00000123344664 8899999999999999988 77777777 899999998654
Q ss_pred cchhhhh---CCCcEEEEcccCCCCCCCCCCCHHHHHHH
Q 025514 165 EETYPFL---QDCEILIMDALRPDRSSSTHFGLPRALEE 200 (251)
Q Consensus 165 e~~~~~~---~~~DlLi~E~~~~~~~~~~H~t~~ea~~~ 200 (251)
+.+.+-+ ..+|+||+|+||.+ .-|...++..+.
T Consensus 169 ~~l~~~a~~~~~~DvLI~EsTYg~---~~~~~r~~~e~~ 204 (427)
T COG1236 169 DRLLNGAELPPCIDVLIVESTYGD---RLHPNRDEVERR 204 (427)
T ss_pred CCCCCccccCCCCcEEEEecccCC---ccCCCHHHHHHH
Confidence 4444333 23699999999986 445555554443
No 25
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.35 E-value=4.5e-06 Score=71.00 Aligned_cols=119 Identities=21% Similarity=0.277 Sum_probs=77.0
Q ss_pred EEecCceeEeCCEEEEEE-EeccCCCcceEEEEEc--------eEEEeCCCC-CCCcchhhhh--CCCcEEEEcccCC--
Q 025514 119 NIIDEEPFTVQDLKITPL-PVWHGAGYRSLGFRFG--------NICYISDVS-EIPEETYPFL--QDCEILIMDALRP-- 184 (251)
Q Consensus 119 ~~i~~~~~~~~~~~I~~~-~v~H~~~~~s~gy~i~--------~i~Ys~Dt~-~~~e~~~~~~--~~~DlLi~E~~~~-- 184 (251)
..-++++|++|+..|+.- |+.|+....-+||++. +|++++|+. +..++.++|+ ++.|++|+..-..
T Consensus 135 e~ADgk~f~fG~t~IefS~pvpHG~eGskLGyVl~v~V~dg~~~i~faSDvqGp~~~~~l~~i~e~~P~v~ii~GPpty~ 214 (304)
T COG2248 135 EYADGKTFEFGGTVIEFSPPVPHGREGSKLGYVLMVAVTDGKSSIVFASDVQGPINDEALEFILEKRPDVLIIGGPPTYL 214 (304)
T ss_pred EecCCceEEeCCEEEEecCCCCCCCcccccceEEEEEEecCCeEEEEcccccCCCccHHHHHHHhcCCCEEEecCCchhH
Confidence 333568999999999854 8899974467888886 899999996 6667788888 4799999987422
Q ss_pred CCCCCCCCCHHHHHH----HHHhcCCCeEEEEccCC-CCChHHHHHHHHhhhhcCCCcE
Q 025514 185 DRSSSTHFGLPRALE----EVRKIQPKRTLFIGMMH-LMDHEKVNEELLKLMETEGLDV 238 (251)
Q Consensus 185 ~~~~~~H~t~~ea~~----~a~~~~~k~lvltH~s~-~~~~~~l~~~l~~~~~~~~~~v 238 (251)
-....+-.+.+-+++ ++.+.+ +++|+-|.-- .-++++..+++.+.++..|.+|
T Consensus 215 lg~r~~~~~~E~~irNl~~ii~~~~-~~lViDHHllRD~~y~e~l~~l~~~~~~~GV~v 272 (304)
T COG2248 215 LGYRVGPKSLEKGIRNLERIIEETN-ATLVIDHHLLRDKNYREFLEELFERAEKAGVEV 272 (304)
T ss_pred hhhhcChHHHHHHHHHHHHHHHhCc-ceEEEeehhhcCCCHHHHHHHHHhhHhhcCcee
Confidence 111123334444444 444444 6777777333 3356666666665443333333
No 26
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=98.19 E-value=1.5e-05 Score=64.15 Aligned_cols=90 Identities=19% Similarity=0.345 Sum_probs=63.2
Q ss_pred EEec-CceeEeCCEEEEEEEeccCC-----CcceEEEEEc----eEEEeCCCCCCC-cchhhhhCCCcEEEEcccCCCCC
Q 025514 119 NIID-EEPFTVQDLKITPLPVWHGA-----GYRSLGFRFG----NICYISDVSEIP-EETYPFLQDCEILIMDALRPDRS 187 (251)
Q Consensus 119 ~~i~-~~~~~~~~~~I~~~~v~H~~-----~~~s~gy~i~----~i~Ys~Dt~~~~-e~~~~~~~~~DlLi~E~~~~~~~ 187 (251)
+.+. ++.+++++++|+.++..|.. .....||.|+ ++++.||+...+ ++..+.+.++|++++-+.-
T Consensus 63 ~vv~~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~i~~~g~~i~~~Gd~~~~~~~~~~~~~~~vDvl~~p~~g---- 138 (163)
T PF13483_consen 63 HVVAPGGEYRFGGFKITAVPAYHDGPGGHPRGENVGYLIEVGGVTIYHAGDTGFPPDDEQLKQLGKVDVLFLPVGG---- 138 (163)
T ss_dssp EEE-TTEEEECTTEEEEEEEEEE-STGTS-TTCCEEEEEEETTEEEEE-TT--S---HHHHHHH-S-SEEEEE--T----
T ss_pred EEEccceEEEEeeeEEEEEeeeccccCCCCcCCeEEEEEEeCCCEEEEECCCccCCCHHHHhcccCCCEEEecCCC----
Confidence 4443 47889999999999999952 1368999998 999999998532 3455666789999998863
Q ss_pred CCCCCCHHHHHHHHHhcCCCeEEEEc
Q 025514 188 SSTHFGLPRALEEVRKIQPKRTLFIG 213 (251)
Q Consensus 188 ~~~H~t~~ea~~~a~~~~~k~lvltH 213 (251)
...|+.++|+++++++++|.++-+|
T Consensus 139 -~~~~~~~~a~~~~~~l~pk~viP~H 163 (163)
T PF13483_consen 139 -PFTMGPEEAAELAERLKPKLVIPMH 163 (163)
T ss_dssp -TTS--HHHHHHHHHHCT-SEEEEES
T ss_pred -CcccCHHHHHHHHHHcCCCEEEeCC
Confidence 4579999999999999999999988
No 27
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=97.97 E-value=0.0012 Score=57.13 Aligned_cols=95 Identities=15% Similarity=0.193 Sum_probs=72.5
Q ss_pred EEEec-CceeEeCCEEEEEEEeccCC-----------CcceEEEEEc----eEEEeCCCCCCCcchhhhhC-CCcEEEEc
Q 025514 118 FNIID-EEPFTVQDLKITPLPVWHGA-----------GYRSLGFRFG----NICYISDVSEIPEETYPFLQ-DCEILIMD 180 (251)
Q Consensus 118 ~~~i~-~~~~~~~~~~I~~~~v~H~~-----------~~~s~gy~i~----~i~Ys~Dt~~~~e~~~~~~~-~~DlLi~E 180 (251)
++.+. +..+++++++|+..++.|.. .....||+|+ ++..+|||++.. ....... .+|+++.+
T Consensus 102 ~~~~~~~~~~~~~~~~i~~~~a~h~~~~~~~~~~~~~~~~~~~~vi~~~g~~iyh~GDt~~~~-~~~~~~~~~~DvallP 180 (258)
T COG2220 102 VHELGWGDVIELGDLEITAVPAYHVSARHLPGRGIRPTGLWVGYVIETPGGRVYHAGDTGYLF-LIIEELDGPVDVALLP 180 (258)
T ss_pred EEeecCCceEEecCcEEEEEEeecccccccCCCCccccCCceEEEEEeCCceEEeccCccHHH-HhhhhhcCCccEEEec
Confidence 44443 36788899999999888863 1346889998 899999999732 2222222 27999998
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEccC
Q 025514 181 ALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMM 215 (251)
Q Consensus 181 ~~~~~~~~~~H~t~~ea~~~a~~~~~k~lvltH~s 215 (251)
.--.+ ...|+...++.++++.+++|+++-+|..
T Consensus 181 ig~~~--~~~~~~~~~~~~~~~~l~~~~viP~Hy~ 213 (258)
T COG2220 181 IGGYP--NATMMPPEAAVAAAEVLRPKRVIPMHYG 213 (258)
T ss_pred cCCCC--CCccCCHHHHHHHHHHhcCCeEEeeccc
Confidence 86432 6789999999999999999999999988
No 28
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=97.77 E-value=0.0002 Score=61.89 Aligned_cols=88 Identities=17% Similarity=0.195 Sum_probs=64.0
Q ss_pred heeeeeecC-cEEEEecCC--------------------------CCCCChhhHhhhccCCCCccEEeCHHHHHHHHHhC
Q 025514 46 LQACLQSSF-STIALFVGF--------------------------LPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTH 98 (251)
Q Consensus 46 ~~~ll~~~~-~~iLiD~G~--------------------------Hi~GL~~l~~~~~~~~~~l~iygp~~~~~~l~~~~ 98 (251)
.++++..++ ..+|||+|. |++|+..+... .+++||+++.. .+
T Consensus 11 ~~yli~~~~~~~ilID~g~~~~i~~~l~~~g~~l~~Il~TH~H~DHigG~~~l~~~-----~~~~V~~~~~~------~~ 79 (248)
T TIGR03413 11 YIWLLHDPDGQAAVVDPGEAEPVLDALEARGLTLTAILLTHHHHDHVGGVAELLEA-----FPAPVYGPAEE------RI 79 (248)
T ss_pred EEEEEEcCCCCEEEEcCCChHHHHHHHHHcCCeeeEEEeCCCCccccCCHHHHHHH-----CCCeEEecccc------cC
Confidence 346776554 799999996 88888777632 24789998753 11
Q ss_pred CeeeecCCCCCCCcccceeEEEe-cCceeEeCCEEEEEEEec-cCCCcceEEEEEc--eEEEeCCCCC
Q 025514 99 YYLVDTSGIIPGAAVSELQFNII-DEEPFTVQDLKITPLPVW-HGAGYRSLGFRFG--NICYISDVSE 162 (251)
Q Consensus 99 ~~~~~~~~~~~g~~~~~~~~~~i-~~~~~~~~~~~I~~~~v~-H~~~~~s~gy~i~--~i~Ys~Dt~~ 162 (251)
++ . .+.+ +++.+.+++.+|+.+.++ |.. ..++|.+. +++|+||+-.
T Consensus 80 ----------~~-----~-~~~v~~g~~~~~g~~~i~v~~tpGHT~--g~i~~~~~~~~~lftGDtl~ 129 (248)
T TIGR03413 80 ----------PG-----I-THPVKDGDTVTLGGLEFEVLAVPGHTL--GHIAYYLPDSPALFCGDTLF 129 (248)
T ss_pred ----------CC-----C-cEEeCCCCEEEECCEEEEEEECCCCCc--ccEEEEECCCCEEEEcCccc
Confidence 11 0 1223 357889999999999988 877 88999996 8999999964
No 29
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=97.69 E-value=0.00034 Score=64.43 Aligned_cols=95 Identities=14% Similarity=0.131 Sum_probs=66.3
Q ss_pred hheeeeeecCcEEEEecCC-------------------------------CCCCChhhHhhhccCCCCccEEeCHHHHHH
Q 025514 45 ILQACLQSSFSTIALFVGF-------------------------------LPMGLDDLRDWTNNVQRHIPIYVAMRDFEV 93 (251)
Q Consensus 45 ~~~~ll~~~~~~iLiD~G~-------------------------------Hi~GL~~l~~~~~~~~~~l~iygp~~~~~~ 93 (251)
++|+||.. +..+|||+|. |+.|++.+... ....+||+++.+.+.
T Consensus 33 ~NsyLI~~-~~~vLIDtg~~~~~~~~~~~l~~~~~~~~Id~IilTH~H~DHiggl~~l~~~----~p~a~V~~~~~~~~~ 107 (394)
T PRK11921 33 YNSYLIKD-EKTVLIDTVWQPFAKEFVENLKKEIDLDKIDYIVANHGEIDHSGALPELMKE----IPDTPIYCTKNGAKS 107 (394)
T ss_pred EEEEEEeC-CCEEEEeCCCCCcHHHHHHHHHhhcCcccCCEEEeCCCCCchhhHHHHHHHH----CCCCEEEECHHHHHH
Confidence 56799964 6789999993 77777766532 235789999988777
Q ss_pred HHHhCCeeeecCCCCCCCcccceeEEEec-CceeEeCCEEEEEEEec--cCCCcceEEEEEc--eEEEeCCC
Q 025514 94 MKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLKITPLPVW--HGAGYRSLGFRFG--NICYISDV 160 (251)
Q Consensus 94 l~~~~~~~~~~~~~~~g~~~~~~~~~~i~-~~~~~~~~~~I~~~~v~--H~~~~~s~gy~i~--~i~Ys~Dt 160 (251)
++..+.. ...++.+. ++.+++|+.+++.+.++ |.. .++.+-+. .++|+||+
T Consensus 108 l~~~~~~--------------~~~~~~v~~g~~l~lG~~~l~~i~tP~~H~p--~~~~~y~~~~~vLFsgD~ 163 (394)
T PRK11921 108 LKGHYHQ--------------DWNFVVVKTGDRLEIGSNELIFIEAPMLHWP--DSMFTYLTGDNILFSNDA 163 (394)
T ss_pred HHHHhCC--------------CCceEEeCCCCEEeeCCeEEEEEeCCCCCCC--CceEEEEcCCCEEEecCc
Confidence 6643210 01133443 57899999999999555 876 55555555 89999999
No 30
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=97.65 E-value=0.00033 Score=65.59 Aligned_cols=60 Identities=18% Similarity=0.171 Sum_probs=46.1
Q ss_pred ceeEeCCEEEEEEEeccCCCcceEEEEEc----eEEEeCCCCCCCcchhhhh----CCCcEEEEcccCCC
Q 025514 124 EPFTVQDLKITPLPVWHGAGYRSLGFRFG----NICYISDVSEIPEETYPFL----QDCEILIMDALRPD 185 (251)
Q Consensus 124 ~~~~~~~~~I~~~~v~H~~~~~s~gy~i~----~i~Ys~Dt~~~~e~~~~~~----~~~DlLi~E~~~~~ 185 (251)
+..+.+|++++|+-+-|-. .+.-|.++ ++.|+||..+-.|+=...+ .+.|+||.|.++..
T Consensus 144 e~~ev~gIkf~p~~aGhVl--gacMf~veiagv~lLyTGd~sreeDrhl~aae~P~~~~dvli~estygv 211 (668)
T KOG1137|consen 144 ETVEVNGIKFWPYHAGHVL--GACMFMVEIAGVRLLYTGDYSREEDRHLIAAEMPPTGPDVLITESTYGV 211 (668)
T ss_pred cccccCCeEEEeeccchhh--hheeeeeeeceEEEEeccccchhhcccccchhCCCCCccEEEEEeeeeE
Confidence 5678899999999999976 66667777 9999999976433322222 25899999999864
No 31
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=97.64 E-value=0.00038 Score=64.71 Aligned_cols=164 Identities=18% Similarity=0.113 Sum_probs=94.2
Q ss_pred ceeeeeeccccCCCCCCChhhhheeeeeecCcEEEEecCC----------------------------------CCCCCh
Q 025514 24 QISVYTSQISLPTSGFFPFKRILQACLQSSFSTIALFVGF----------------------------------LPMGLD 69 (251)
Q Consensus 24 ~~~~~~s~~~~~~~~~~~~~~~~~~ll~~~~~~iLiD~G~----------------------------------Hi~GL~ 69 (251)
=..||...-+++. |+||++.+.++|||||- |++=||
T Consensus 183 vt~LGg~~EVGRS----------a~lv~T~eSrVLlDcG~n~a~~~~~~~Pyl~vpE~~~~~lDAViiTHAHLDH~G~lP 252 (637)
T COG1782 183 VTALGGFREVGRS----------ALLVSTPESRVLLDCGVNVAGNGEDAFPYLDVPEFQPDELDAVIITHAHLDHCGFLP 252 (637)
T ss_pred EEeeccchhccce----------eEEEecCCceEEEeccccCCCCccccCcccccccccccccceEEEeecccccccchh
Confidence 3455555444444 59999999999999994 444444
Q ss_pred hhHhhhccCCCCccEEeCHHHHHHHHHh-CCee--eecCCC---CCCCcccceeEEE--ecC-ceeEe-CCEEEEEEEec
Q 025514 70 DLRDWTNNVQRHIPIYVAMRDFEVMKKT-HYYL--VDTSGI---IPGAAVSELQFNI--IDE-EPFTV-QDLKITPLPVW 139 (251)
Q Consensus 70 ~l~~~~~~~~~~l~iygp~~~~~~l~~~-~~~~--~~~~~~---~~g~~~~~~~~~~--i~~-~~~~~-~~~~I~~~~v~ 139 (251)
.|-.| +..=+||+.+.|.+.+-=. .+|+ ...... +........-.|- +++ +.-.+ -++++|..-+-
T Consensus 253 ~LfkY----gy~GPVY~T~PTRDlm~LLq~Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgevTDIaPDirLTf~NAG 328 (637)
T COG1782 253 LLFKY----GYDGPVYCTPPTRDLMVLLQLDYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEVTDIAPDIRLTFYNAG 328 (637)
T ss_pred hhhhc----CCCCCeeeCCCcHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHheeeeeccCcccccCCccEEEEeccc
Confidence 44333 2334899999887643210 1111 011000 0100000011122 233 22233 58999999999
Q ss_pred cCCCcceEEEEEc----eEEEeCCCCCCCcchhhhh----CCCcEEEEcccCCCCCCCCCCCHHHHHHHHH
Q 025514 140 HGAGYRSLGFRFG----NICYISDVSEIPEETYPFL----QDCEILIMDALRPDRSSSTHFGLPRALEEVR 202 (251)
Q Consensus 140 H~~~~~s~gy~i~----~i~Ys~Dt~~~~e~~~~~~----~~~DlLi~E~~~~~~~~~~H~t~~ea~~~a~ 202 (251)
|--+.-..-+.|. .++|+||..+.+..+++-+ ..++.||.|+||..+ ..-+.+-++|.+-+.
T Consensus 329 HILGSA~~HlHIGdGlyNi~yTGDfk~~~trLl~~A~n~FpRvEtlimEsTYGg~-~d~q~~R~eaE~~L~ 398 (637)
T COG1782 329 HILGSAMAHLHIGDGLYNIVYTGDFKFEKTRLLEPANNKFPRVETLIMESTYGGR-DDVQPPREEAEKELI 398 (637)
T ss_pred chhcceeeEEEecCCceeEEEecccccceeeecChhhccCcchhheeeeeccCCc-cccCccHHHHHHHHH
Confidence 9663344445665 9999999987554555544 459999999999842 234555566655433
No 32
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=97.63 E-value=0.00062 Score=60.42 Aligned_cols=60 Identities=18% Similarity=0.241 Sum_probs=45.2
Q ss_pred ceeEe-CCEEEEEEEeccCCCcceEEEEEc----eEEEeCCCCCCCcchhhhhC----CCcEEEEcccCCC
Q 025514 124 EPFTV-QDLKITPLPVWHGAGYRSLGFRFG----NICYISDVSEIPEETYPFLQ----DCEILIMDALRPD 185 (251)
Q Consensus 124 ~~~~~-~~~~I~~~~v~H~~~~~s~gy~i~----~i~Ys~Dt~~~~e~~~~~~~----~~DlLi~E~~~~~ 185 (251)
+.+++ +++.|+++-+-|-- .+.-|.+. +++|+||-...|+.-+..+. +.|+||-|++|..
T Consensus 140 qt~~vD~dl~IrayYAGHVL--GAaMf~ikvGd~svvYTGDYnmTpDrHLGaA~id~~rpdlLIsESTYat 208 (501)
T KOG1136|consen 140 QTIQVDEDLQIRAYYAGHVL--GAAMFYIKVGDQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLISESTYAT 208 (501)
T ss_pred heEEecccceeeeeeccccc--ceeEEEEEecceeEEEecCccCCcccccchhhhccccCceEEeecccee
Confidence 55665 58999999999987 44444444 99999999877765444332 5899999999864
No 33
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=97.35 E-value=0.002 Score=61.76 Aligned_cols=132 Identities=17% Similarity=0.153 Sum_probs=81.2
Q ss_pred hheeeeeecCcEEEEecCC------------------------------CCCCChhhHhhhccCCCCccEEeCHHHHH--
Q 025514 45 ILQACLQSSFSTIALFVGF------------------------------LPMGLDDLRDWTNNVQRHIPIYVAMRDFE-- 92 (251)
Q Consensus 45 ~~~~ll~~~~~~iLiD~G~------------------------------Hi~GL~~l~~~~~~~~~~l~iygp~~~~~-- 92 (251)
..|++|+.++.+||||||+ |++||+....- -.-..+||+.-.++.
T Consensus 15 ~~cyllqiD~~~iLiDcGwd~~f~~~~i~~l~~~i~~iDaILLShpd~~hlGaLpY~~~k---~gl~~~VYAT~PV~~mG 91 (764)
T KOG1135|consen 15 PLCYLLQIDGVRILIDCGWDESFDMSMIKELKPVIPTIDAILLSHPDILHLGALPYAVGK---LGLNAPVYATLPVIKMG 91 (764)
T ss_pred cceEEEEEcCeEEEEeCCCcchhccchhhhhhcccccccEEEecCCChHHhccchhhHhh---CCccceEEEecchhhhh
Confidence 3679999999999999997 88888765421 122377888777644
Q ss_pred ------HHHHhCCe-eeecCCCCCCCcccce-eEEEecC-ceeEe----CCEEEEEEEeccCCCcceEEEEEc----eEE
Q 025514 93 ------VMKKTHYY-LVDTSGIIPGAAVSEL-QFNIIDE-EPFTV----QDLKITPLPVWHGAGYRSLGFRFG----NIC 155 (251)
Q Consensus 93 ------~l~~~~~~-~~~~~~~~~g~~~~~~-~~~~i~~-~~~~~----~~~~I~~~~v~H~~~~~s~gy~i~----~i~ 155 (251)
.++...+. -+... ...... ..| ++..+.+ ++..+ .|++|+|.++-|.. ..--|+|. +++
T Consensus 92 ~m~myD~~~S~~~~~df~l~-sldDvd-~aFd~I~~LKYsQ~v~L~gk~~Gl~itaynAGhmi--GGsIWkI~k~~E~iv 167 (764)
T KOG1135|consen 92 QMFMYDLYRSHGNVGDFDLF-SLDDVD-AAFDKIIQLKYSQPVALKGKGSGLTITAYNAGHMI--GGSIWKISKVGEDIV 167 (764)
T ss_pred hhhHHHHHhccccccccccc-chhhhH-HHHhheeeeeccceEEeccccCceEEeeecCCCcc--CceEEEEEecCceEE
Confidence 11211110 00000 000000 011 1222333 45544 47899999999988 55668886 999
Q ss_pred EeCCCCCCCc-----chhhhhCCCcEEEEcccC
Q 025514 156 YISDVSEIPE-----ETYPFLQDCEILIMDALR 183 (251)
Q Consensus 156 Ys~Dt~~~~e-----~~~~~~~~~DlLi~E~~~ 183 (251)
|+.|-..--| ..++-+.++.+||-++..
T Consensus 168 Yavd~NHkKe~HLNG~~l~~l~RPsllITda~~ 200 (764)
T KOG1135|consen 168 YAVDFNHKKERHLNGCSLSGLNRPSLLITDANH 200 (764)
T ss_pred EEEecccchhcccCCccccccCCcceEEecccc
Confidence 9999865333 345667789999999864
No 34
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=97.10 E-value=0.0047 Score=58.46 Aligned_cols=96 Identities=13% Similarity=0.151 Sum_probs=67.1
Q ss_pred hheeeeeecCcEEEEecCC-------------------------------CCCCChhhHhhhccCCCCccEEeCHHHHHH
Q 025514 45 ILQACLQSSFSTIALFVGF-------------------------------LPMGLDDLRDWTNNVQRHIPIYVAMRDFEV 93 (251)
Q Consensus 45 ~~~~ll~~~~~~iLiD~G~-------------------------------Hi~GL~~l~~~~~~~~~~l~iygp~~~~~~ 93 (251)
++||||. ++..+|||+|. |+.|++.|+.. ....+||+++.+.+.
T Consensus 35 ~NsYLI~-~~~~vLIDtg~~~~~~~~l~~l~~~~~~~~Id~IilTH~H~DH~Ggl~~Ll~~----~p~a~V~~s~~~~~~ 109 (479)
T PRK05452 35 YNSYLIR-EEKNVLIDTVDHKFSREFVQNLRNEIDLADIDYIVINHAEEDHAGALTELMAQ----IPDTPIYCTANAIDS 109 (479)
T ss_pred EEEEEEE-CCCEEEEeCCCcccHHHHHHHHHhcCCHhhCCEEEeCCCCcchhchHHHHHHH----CCCCEEEECHHHHHH
Confidence 4779997 46899999984 88888777642 135889999998877
Q ss_pred HHHhCCeeeecCCCCCCCcccceeEEEec-CceeEeC-CEEEEEEEec--cCCCcceEEEEEc--eEEEeCCC
Q 025514 94 MKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQ-DLKITPLPVW--HGAGYRSLGFRFG--NICYISDV 160 (251)
Q Consensus 94 l~~~~~~~~~~~~~~~g~~~~~~~~~~i~-~~~~~~~-~~~I~~~~v~--H~~~~~s~gy~i~--~i~Ys~Dt 160 (251)
+...+.. +..+++.+. ++.+.+| +.+++.+.++ |.. .++.+-+. .++|++|.
T Consensus 110 l~~~~~~-------------~~~~~~~v~~G~~l~lG~~~~l~~i~tP~~H~p--gs~~~y~~~~~vLFsgD~ 167 (479)
T PRK05452 110 INGHHHH-------------PEWNFNVVKTGDTLDIGNGKQLIFVETPMLHWP--DSMMTYLTGDAVLFSNDA 167 (479)
T ss_pred HHHhhcC-------------CcCeEEEeCCCCEEecCCCcEEEEEECCCCCCC--CceEEEEcCCCEEEeccc
Confidence 6543210 012345554 5789998 4677777665 876 66666555 89999995
No 35
>PLN02398 hydroxyacylglutathione hydrolase
Probab=96.68 E-value=0.014 Score=52.54 Aligned_cols=90 Identities=12% Similarity=0.116 Sum_probs=63.5
Q ss_pred heeeeeec--CcEEEEecCC--------------------------CCCCChhhHhhhccCCCCccEEeCHHHHHHHHHh
Q 025514 46 LQACLQSS--FSTIALFVGF--------------------------LPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKT 97 (251)
Q Consensus 46 ~~~ll~~~--~~~iLiD~G~--------------------------Hi~GL~~l~~~~~~~~~~l~iygp~~~~~~l~~~ 97 (251)
.+|+|..+ +..++||.|. |++|...|... .+.+||+++...+.+
T Consensus 88 y~Yli~d~~t~~~~vVDP~~a~~vl~~l~~~g~~L~~ILlTH~H~DH~GG~~~L~~~-----~ga~V~g~~~~~~~i--- 159 (329)
T PLN02398 88 YAYLLHDEDTGTVGVVDPSEAVPVIDALSRKNRNLTYILNTHHHYDHTGGNLELKAR-----YGAKVIGSAVDKDRI--- 159 (329)
T ss_pred EEEEEEECCCCEEEEEcCCCHHHHHHHHHhcCCCceEEEECCCCchhhCCHHHHHHh-----cCCEEEEehHHhhhc---
Confidence 45777543 3578999996 88888887643 257899998643321
Q ss_pred CCeeeecCCCCCCCcccceeEEEe-cCceeEeCCEEEEEEEec-cCCCcceEEEEEc--eEEEeCCCCC
Q 025514 98 HYYLVDTSGIIPGAAVSELQFNII-DEEPFTVQDLKITPLPVW-HGAGYRSLGFRFG--NICYISDVSE 162 (251)
Q Consensus 98 ~~~~~~~~~~~~g~~~~~~~~~~i-~~~~~~~~~~~I~~~~v~-H~~~~~s~gy~i~--~i~Ys~Dt~~ 162 (251)
++ +. +.+ +++.+.+++.+++.+.++ |.. ..++|.+. .++|+||+-.
T Consensus 160 -----------~~-----~d-~~v~dGd~i~lgg~~l~vi~tPGHT~--GhI~~~~~~~~vLFtGDtLf 209 (329)
T PLN02398 160 -----------PG-----ID-IVLKDGDKWMFAGHEVLVMETPGHTR--GHISFYFPGSGAIFTGDTLF 209 (329)
T ss_pred -----------cC-----Cc-EEeCCCCEEEECCeEEEEEeCCCcCC--CCEEEEECCCCEEEECCCcC
Confidence 11 11 123 357788999999998887 887 78888875 7999999964
No 36
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=96.68 E-value=0.0054 Score=48.91 Aligned_cols=19 Identities=11% Similarity=0.058 Sum_probs=17.3
Q ss_pred hheeeeeecCcEEEEecCC
Q 025514 45 ILQACLQSSFSTIALFVGF 63 (251)
Q Consensus 45 ~~~~ll~~~~~~iLiD~G~ 63 (251)
.+|++|+.++..+|||||.
T Consensus 6 ~n~~li~~~~~~iliD~G~ 24 (194)
T PF00753_consen 6 SNSYLIEGGDGAILIDTGL 24 (194)
T ss_dssp EEEEEEEETTEEEEESEBS
T ss_pred EEEEEEEECCEEEEEeCCC
Confidence 4679999999999999997
No 37
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=96.37 E-value=0.017 Score=49.92 Aligned_cols=87 Identities=14% Similarity=0.090 Sum_probs=59.0
Q ss_pred eee-eecCcEEEEecCC--------------------------CCCCChhhHhhhccCCCCccEEeCHHHHHHHHHhCCe
Q 025514 48 ACL-QSSFSTIALFVGF--------------------------LPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYY 100 (251)
Q Consensus 48 ~ll-~~~~~~iLiD~G~--------------------------Hi~GL~~l~~~~~~~~~~l~iygp~~~~~~l~~~~~~ 100 (251)
+++ +.++..+|||+|. |++|+..|... ...++||++.....
T Consensus 15 ~li~~~~~~~ilIDpg~~~~vl~~l~~~g~~l~~IllTH~H~DHigG~~~l~~~----~~~~~V~~~~~~~~-------- 82 (251)
T PRK10241 15 WVLNDEAGRCLIVDPGEAEPVLNAIAENNWQPEAIFLTHHHHDHVGGVKELVEK----FPQIVVYGPQETQD-------- 82 (251)
T ss_pred EEEEcCCCcEEEECCCChHHHHHHHHHcCCccCEEEeCCCCchhhccHHHHHHH----CCCCEEEecccccc--------
Confidence 444 3345789999996 77787776632 12478898764310
Q ss_pred eeecCCCCCCCcccceeEEEe-cCceeEeCCEEEEEEEec-cCCCcceEEEEEceEEEeCCCCC
Q 025514 101 LVDTSGIIPGAAVSELQFNII-DEEPFTVQDLKITPLPVW-HGAGYRSLGFRFGNICYISDVSE 162 (251)
Q Consensus 101 ~~~~~~~~~g~~~~~~~~~~i-~~~~~~~~~~~I~~~~v~-H~~~~~s~gy~i~~i~Ys~Dt~~ 162 (251)
.+ . .+.+ +++.+.+++.+++.+.++ |.. ..+.|..+.++++|||-.
T Consensus 83 --------~~-----~-~~~v~~g~~i~ig~~~~~vi~tPGHT~--ghi~~~~~~~lFtGDtlf 130 (251)
T PRK10241 83 --------KG-----T-TQVVKDGETAFVLGHEFSVFATPGHTL--GHICYFSKPYLFCGDTLF 130 (251)
T ss_pred --------cC-----C-ceEeCCCCEEEeCCcEEEEEEcCCCCc--cceeeecCCcEEEcCeec
Confidence 00 0 1223 356788899899988888 887 778886668899999864
No 38
>PLN02469 hydroxyacylglutathione hydrolase
Probab=96.14 E-value=0.051 Score=47.25 Aligned_cols=89 Identities=10% Similarity=0.103 Sum_probs=59.8
Q ss_pred heeeeeec--CcEEEEecCC--------------------------CCCCChhhHhhhccCCCCccEEeCHHHHHHHHHh
Q 025514 46 LQACLQSS--FSTIALFVGF--------------------------LPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKT 97 (251)
Q Consensus 46 ~~~ll~~~--~~~iLiD~G~--------------------------Hi~GL~~l~~~~~~~~~~l~iygp~~~~~~l~~~ 97 (251)
.+|+|..+ +..+|||+|. |+.|+..|+... ..++||++... .
T Consensus 13 y~Yli~d~~~~~~vlIDp~~~~~il~~l~~~g~~l~~Il~TH~H~DH~gG~~~l~~~~----~~~~V~~~~~~------~ 82 (258)
T PLN02469 13 YAYLIIDESTKDAAVVDPVDPEKVLQAAHEHGAKIKLVLTTHHHWDHAGGNEKIKKLV----PGIKVYGGSLD------N 82 (258)
T ss_pred EEEEEEeCCCCeEEEECCCChHHHHHHHHHcCCcccEEEecCCCCccccCHHHHHHHC----CCCEEEEechh------c
Confidence 35888654 3799999996 888887776431 24789987631 0
Q ss_pred CCeeeecCCCCCCCcccceeEEEe-cCceeEeCC-EEEEEEEec-cCCCcceEEEEEc------eEEEeCCCCC
Q 025514 98 HYYLVDTSGIIPGAAVSELQFNII-DEEPFTVQD-LKITPLPVW-HGAGYRSLGFRFG------NICYISDVSE 162 (251)
Q Consensus 98 ~~~~~~~~~~~~g~~~~~~~~~~i-~~~~~~~~~-~~I~~~~v~-H~~~~~s~gy~i~------~i~Ys~Dt~~ 162 (251)
. ++ .. +.+ +++.+.+++ .+++.+.++ |.. .++.|.+. .++++|||-.
T Consensus 83 ~----------~~-----~~-~~v~~gd~i~lg~~~~~~vi~tPGHT~--ghi~~~~~~~~~~~~~lFtGDtLf 138 (258)
T PLN02469 83 V----------KG-----CT-HPVENGDKLSLGKDVNILALHTPCHTK--GHISYYVTGKEGEDPAVFTGDTLF 138 (258)
T ss_pred C----------CC-----CC-eEeCCCCEEEECCceEEEEEECCCCCC--CCEEEEeccCCCCCCEEEecCccc
Confidence 0 00 11 223 357788885 677777776 877 88899885 3999999854
No 39
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=95.79 E-value=0.015 Score=50.15 Aligned_cols=44 Identities=23% Similarity=0.293 Sum_probs=36.3
Q ss_pred heeeeeecCcEEEEecCC------------------------------CCCCChhhHhhhccCCCCccEEeCHHHHH
Q 025514 46 LQACLQSSFSTIALFVGF------------------------------LPMGLDDLRDWTNNVQRHIPIYVAMRDFE 92 (251)
Q Consensus 46 ~~~ll~~~~~~iLiD~G~------------------------------Hi~GL~~l~~~~~~~~~~l~iygp~~~~~ 92 (251)
.|+|||.++.+||||+|+ |..||..+.. .....++||++++...
T Consensus 23 fS~LVE~~~~riLFDtG~~~~~ll~Na~~lgvd~~did~vvlSHgH~DH~GGL~~~~~---~~~~~i~v~ahp~af~ 96 (259)
T COG1237 23 FSALVEDEGTRILFDTGTDSDVLLHNARLLGVDLRDIDAVVLSHGHYDHTGGLPYLLE---ENNPGIPVYAHPDAFK 96 (259)
T ss_pred eEEEEEcCCeEEEEeCCCCcHHHHHHHHHcCCCcccCcEEEEeCCCccccCchHhHHh---ccCCCceEEeChHHHh
Confidence 459999999999999995 8889886653 2457899999998866
No 40
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=95.78 E-value=0.035 Score=47.71 Aligned_cols=87 Identities=16% Similarity=0.125 Sum_probs=63.8
Q ss_pred CCEEEEEEEeccCCCcce---------EEEEEc----eEEEeCCCCCCCcchhh---hhCCCcEEEEcccCCC-C--CCC
Q 025514 129 QDLKITPLPVWHGAGYRS---------LGFRFG----NICYISDVSEIPEETYP---FLQDCEILIMDALRPD-R--SSS 189 (251)
Q Consensus 129 ~~~~I~~~~v~H~~~~~s---------~gy~i~----~i~Ys~Dt~~~~e~~~~---~~~~~DlLi~E~~~~~-~--~~~ 189 (251)
+-++|.+.|..|-. ..+ -+|.+- +|+++|||+++++++.+ .+--+|+..+-+...+ + -..
T Consensus 196 ~~~ti~~tPaqHw~-~R~L~D~Nk~LW~sw~v~g~~nrfffaGDTGyc~~~F~~IgerfGpfdLAaiPiGaYePrWfmK~ 274 (343)
T KOG3798|consen 196 KTYTIWCLPAQHWG-QRGLFDRNKRLWSSWAVIGENNRFFFAGDTGYCDGEFKKIGERFGPFDLAAIPIGAYEPRWFMKS 274 (343)
T ss_pred cEEEEEEcchhhhc-ccccccCCcceeeeeEEecCCceEEecCCCCcccHHHHHHHHhcCCcceeeccccccCchhhccc
Confidence 34788899999953 122 344443 89999999998744333 3334999999876553 3 346
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEEccCC
Q 025514 190 THFGLPRALEEVRKIQPKRTLFIGMMH 216 (251)
Q Consensus 190 ~H~t~~ea~~~a~~~~~k~lvltH~s~ 216 (251)
.|-+++||.++-+...+|+.+-+|-.-
T Consensus 275 ~HInPeEav~Ihkdv~arns~gIHWGT 301 (343)
T KOG3798|consen 275 QHINPEEAVEIHKDVRAKNSIGIHWGT 301 (343)
T ss_pred ccCCHHHHHHHHHHHhhhcceeEeeee
Confidence 799999999999999999999888543
No 41
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=95.67 E-value=0.43 Score=47.05 Aligned_cols=95 Identities=16% Similarity=0.181 Sum_probs=55.4
Q ss_pred CceeEeCCEEEEEEEecc----CCCcceEEEEEc----eEEEeCCCCCCCcchhhhhC-----CCcEEEEcccCCCCCCC
Q 025514 123 EEPFTVQDLKITPLPVWH----GAGYRSLGFRFG----NICYISDVSEIPEETYPFLQ-----DCEILIMDALRPDRSSS 189 (251)
Q Consensus 123 ~~~~~~~~~~I~~~~v~H----~~~~~s~gy~i~----~i~Ys~Dt~~~~e~~~~~~~-----~~DlLi~E~~~~~~~~~ 189 (251)
++.+++++++++.+.-.. ..+..++.++++ ++.++||.+.-.|+ ++++ ++|+|.. +|.
T Consensus 538 G~~~~~~~~~~~vL~P~~~~~~~~N~~S~vl~i~~~~~~~L~tGD~~~~~E~--~l~~~~~~l~~dvLk~-------~HH 608 (662)
T TIGR00361 538 GDVWQWQGLQFHVLSPEAPDPASKNNHSCVLWVDDGGNSWLLTGDLEAEGEQ--EVMRVFPNIKADVLQV-------GHH 608 (662)
T ss_pred CCEEeECCEEEEEECCCCccCCCCCCCceEEEEEECCeeEEEecCCCHHHHH--HHHhcccCcCccEEEe-------CCC
Confidence 567888898888773221 112467888887 89999999753332 2222 2445443 222
Q ss_pred C--CCCHHHHHHHHHhcCCCeEEEEccC-CCC--ChHHHHHHHHh
Q 025514 190 T--HFGLPRALEEVRKIQPKRTLFIGMM-HLM--DHEKVNEELLK 229 (251)
Q Consensus 190 ~--H~t~~ea~~~a~~~~~k~lvltH~s-~~~--~~~~l~~~l~~ 229 (251)
| .++ ..++.++.+++..+..==. .++ ++++..+.+++
T Consensus 609 GS~~Ss---s~~fl~~v~P~~aiiS~g~~N~yghP~~~vl~rl~~ 650 (662)
T TIGR00361 609 GSKTST---SEELIQQVQPKVAIISAGRNNRWHHPHQKVLQRLQR 650 (662)
T ss_pred CCCCCC---hHHHHHhcCCCEEEEECCCCCCCCCChHHHHHHHHH
Confidence 2 223 3567788999877765211 122 45666666665
No 42
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=95.37 E-value=0.11 Score=47.46 Aligned_cols=94 Identities=12% Similarity=0.058 Sum_probs=67.6
Q ss_pred heeeeeecCcEEEEecCC-------------------------------CCCCChhhHhhhccCCCCccEEeCHHHHHHH
Q 025514 46 LQACLQSSFSTIALFVGF-------------------------------LPMGLDDLRDWTNNVQRHIPIYVAMRDFEVM 94 (251)
Q Consensus 46 ~~~ll~~~~~~iLiD~G~-------------------------------Hi~GL~~l~~~~~~~~~~l~iygp~~~~~~l 94 (251)
++|||. ++..+|||.+. |.+.|+.++... ...+|+++....+.|
T Consensus 37 NSYLI~-~~k~aLID~~~~~~~~~~l~~l~~~id~k~iDYIi~~H~ePDhsg~l~~ll~~~----p~a~ii~s~~~~~~L 111 (388)
T COG0426 37 NSYLIV-GDKTALIDTVGEKFFDEYLENLSKYIDPKEIDYIIVNHTEPDHSGSLPELLELA----PNAKIICSKLAARFL 111 (388)
T ss_pred eeEEEe-CCcEEEECCCCcchHHHHHHHHHhhcChhcCeEEEECCCCcchhhhHHHHHHhC----CCCEEEeeHHHHHHH
Confidence 459999 89999999995 777777777542 368999999988888
Q ss_pred HHhCCeeeecCCCCCCCcccceeEEEec-CceeEeCCEEEEEEEe--ccCCCcce-EEEEEc-eEEEeCCC
Q 025514 95 KKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLKITPLPV--WHGAGYRS-LGFRFG-NICYISDV 160 (251)
Q Consensus 95 ~~~~~~~~~~~~~~~g~~~~~~~~~~i~-~~~~~~~~~~I~~~~v--~H~~~~~s-~gy~i~-~i~Ys~Dt 160 (251)
+..+... ..+.... ++.+.+||-+++.+++ -|.. ++ +-|..+ +|+||+|-
T Consensus 112 ~~~~~~~--------------~~~~ivk~Gd~ldlGg~tL~Fi~ap~LHWP--d~m~TYd~~~kILFS~D~ 166 (388)
T COG0426 112 KGFYHDP--------------EWFKIVKTGDTLDLGGHTLKFIPAPFLHWP--DTMFTYDPEDKILFSCDA 166 (388)
T ss_pred HHhcCCc--------------cceeecCCCCEeccCCcEEEEEeCCCCCCC--CceeEeecCCcEEEcccc
Confidence 8743211 1133443 5789999977776655 5876 44 445555 89999995
No 43
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=94.91 E-value=0.17 Score=47.48 Aligned_cols=115 Identities=17% Similarity=0.246 Sum_probs=79.7
Q ss_pred cEEeCHHHHHHHHHhCCeeeecCCCCCCCcccceeEEEec-CceeEeCCEEEEEEEeccCCCcceEEEEEc-----eEEE
Q 025514 83 PIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLKITPLPVWHGAGYRSLGFRFG-----NICY 156 (251)
Q Consensus 83 ~iygp~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~i~-~~~~~~~~~~I~~~~v~H~~~~~s~gy~i~-----~i~Y 156 (251)
++|+.+-+.+.+...+..... . .+.++ ++++.+.++.++.++++|.. .++-|.|+ .+++
T Consensus 137 ~lYCS~ita~Lv~~~~~v~~~-----------~--i~~l~l~~~~~i~~~~vt~ldAnHCP--Ga~mf~F~~~~~~~~lh 201 (481)
T KOG1361|consen 137 PLYCSPITARLVPLKVSVTKQ-----------S--IQALDLNQPLEIPGIQVTLLDANHCP--GAVMFLFELSFGPCILH 201 (481)
T ss_pred cccccccchhhhhhhcccChh-----------h--ceeecCCCceeecceEEEEeccccCC--CceEEEeecCCCceEEe
Confidence 399999988877665442211 1 23444 47899999999999999998 88888887 8999
Q ss_pred eCCCCCCCcchhh--hh---CCCcEEEEcccCCCC-CCC--CCCCHHHHHHHHHhcCCC--eEEEEc
Q 025514 157 ISDVSEIPEETYP--FL---QDCEILIMDALRPDR-SSS--THFGLPRALEEVRKIQPK--RTLFIG 213 (251)
Q Consensus 157 s~Dt~~~~e~~~~--~~---~~~DlLi~E~~~~~~-~~~--~H~t~~ea~~~a~~~~~k--~lvltH 213 (251)
+||.++. +++.+ ++ +.+|.+..|+++-+. ..+ -+-..++++++......+ |+.+.|
T Consensus 202 tGDFR~s-~~m~~~p~~~~~~~i~~lyLDtTycnp~y~Fpsq~esvq~v~~~i~~~~~~~~~~Li~v 267 (481)
T KOG1361|consen 202 TGDFRAS-ADMSKEPALTLEQTIDILYLDTTYCNPKYDFPSQEESVQEVVDVIRSHASKNDRVLIVV 267 (481)
T ss_pred cCCcccC-hhhhhChHHhcCCccceEEEeecccCCCCCCccHHHHHHHHHHHHHhhhhhCCceEEEE
Confidence 9999975 34554 22 569999999999864 222 345666666665555433 344444
No 44
>PLN02962 hydroxyacylglutathione hydrolase
Probab=94.29 E-value=0.26 Score=42.69 Aligned_cols=39 Identities=15% Similarity=0.191 Sum_probs=31.4
Q ss_pred cCceeEeCCEEEEEEEec-cCCCcceEEEEEc--------eEEEeCCCCC
Q 025514 122 DEEPFTVQDLKITPLPVW-HGAGYRSLGFRFG--------NICYISDVSE 162 (251)
Q Consensus 122 ~~~~~~~~~~~I~~~~v~-H~~~~~s~gy~i~--------~i~Ys~Dt~~ 162 (251)
+++.+.+++.+++.+.++ |.. .++.|.+. .++|+||+-.
T Consensus 106 ~g~~i~~g~~~l~vi~tPGHT~--g~v~~~~~d~~~~~~~~~lftGD~Lf 153 (251)
T PLN02962 106 PGDKIYFGDLYLEVRATPGHTA--GCVTYVTGEGPDQPQPRMAFTGDALL 153 (251)
T ss_pred CCCEEEECCEEEEEEECCCCCc--CcEEEEeccCCCCCccceEEECCeec
Confidence 357789999999888887 877 78898875 3999999853
No 45
>PRK11539 ComEC family competence protein; Provisional
Probab=94.29 E-value=1.1 Score=45.00 Aligned_cols=96 Identities=18% Similarity=0.181 Sum_probs=55.4
Q ss_pred CceeEeCCEEEEEE-EeccCC---CcceEEEEEc----eEEEeCCCCCCCcchhhhhC------CCcEEEEcccCCCCCC
Q 025514 123 EEPFTVQDLKITPL-PVWHGA---GYRSLGFRFG----NICYISDVSEIPEETYPFLQ------DCEILIMDALRPDRSS 188 (251)
Q Consensus 123 ~~~~~~~~~~I~~~-~v~H~~---~~~s~gy~i~----~i~Ys~Dt~~~~e~~~~~~~------~~DlLi~E~~~~~~~~ 188 (251)
++.++.++.+++.+ |-.|.. +..++.++++ ++.++||.+.-.| .+.++ ++|+|.. +|
T Consensus 595 g~~~~~~~~~~~vL~P~~~~~~~~N~~S~Vl~i~~~~~~~LltGDi~~~~E--~~Ll~~~~~~l~~dvL~v-------pH 665 (755)
T PRK11539 595 GEQWQWQGLTFSVHWPLEQSNDAGNNDSCVIRVDDGKHSILLTGDLEAQAE--QKLLSRYWQQLAATLLQV-------PH 665 (755)
T ss_pred CCeEeECCEEEEEEecCcccCCCCCCccEEEEEEECCEEEEEEeCCChHHH--HHHHhcCccCcCCCEEEe-------CC
Confidence 46677888888776 333321 2367888887 8999999864322 23332 2454432 23
Q ss_pred CCCCCHHHHHHHHHhcCCCeEEEEccCCCC----ChHHHHHHHHh
Q 025514 189 STHFGLPRALEEVRKIQPKRTLFIGMMHLM----DHEKVNEELLK 229 (251)
Q Consensus 189 ~~H~t~~ea~~~a~~~~~k~lvltH~s~~~----~~~~l~~~l~~ 229 (251)
.| +..+...++.++.+++-.+..= +.++ ++++..+.+++
T Consensus 666 HG-S~tSss~~fl~~v~P~~aiiS~-g~~NryghP~~~v~~rl~~ 708 (755)
T PRK11539 666 HG-SNTSSSLPFIRAVNGKVALASA-SRYNAWRLPSVKVKQRYQQ 708 (755)
T ss_pred CC-CCCCChHHHHHhcCCCEEEEeC-CCCCCCCCCCHHHHHHHHH
Confidence 22 2223346688899998776643 2222 45666555654
No 46
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=93.64 E-value=0.91 Score=37.78 Aligned_cols=39 Identities=13% Similarity=0.195 Sum_probs=30.2
Q ss_pred CceeEeCCEEEEEEEec-cCCCcceEEEEEc--eEEEeCCCCCC
Q 025514 123 EEPFTVQDLKITPLPVW-HGAGYRSLGFRFG--NICYISDVSEI 163 (251)
Q Consensus 123 ~~~~~~~~~~I~~~~v~-H~~~~~s~gy~i~--~i~Ys~Dt~~~ 163 (251)
++.+.+++..++.++++ |.. ..++|.++ +++|+||.-+.
T Consensus 130 ~~~~~~~~~~~~~i~tpGHT~--g~~~~~~~~~~~l~~gD~~~~ 171 (252)
T COG0491 130 GDELDLGGLELEVLHTPGHTP--GHIVFLLEDGGVLFTGDTLFA 171 (252)
T ss_pred CCEEEecCeEEEEEECCCCCC--CeEEEEECCccEEEecceecc
Confidence 46788888666666555 888 89999998 39999998753
No 47
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=91.52 E-value=0.28 Score=30.36 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=23.9
Q ss_pred CCCCCCHHHHHHHHHhcCCCeEEEEcc
Q 025514 188 SSTHFGLPRALEEVRKIQPKRTLFIGM 214 (251)
Q Consensus 188 ~~~H~t~~ea~~~a~~~~~k~lvltH~ 214 (251)
-.+|.+.++..++++.+++++++++|=
T Consensus 14 fSgHad~~~L~~~i~~~~p~~vilVHG 40 (43)
T PF07521_consen 14 FSGHADREELLEFIEQLNPRKVILVHG 40 (43)
T ss_dssp CSSS-BHHHHHHHHHHHCSSEEEEESS
T ss_pred ecCCCCHHHHHHHHHhcCCCEEEEecC
Confidence 358999999999999999999999993
No 48
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=90.15 E-value=2.4 Score=36.92 Aligned_cols=71 Identities=15% Similarity=0.126 Sum_probs=48.2
Q ss_pred CCCCChhhHhhhccCCCCccEEeCHHHHHHHHHhCCeeeecCCCCCCCcccceeEEEec-CceeEeCCEEEEEEEec-cC
Q 025514 64 LPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLKITPLPVW-HG 141 (251)
Q Consensus 64 Hi~GL~~l~~~~~~~~~~l~iygp~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~i~-~~~~~~~~~~I~~~~v~-H~ 141 (251)
|++|+..|.... ...+.+||.. ....+.+- +.+. ++.+.++|.+|+.+.++ |.
T Consensus 64 HsGGn~~i~~~~---~~~~~v~g~~------~~r~~~i~----------------~~~~~~e~~~~~g~~v~~l~TPgHT 118 (265)
T KOG0813|consen 64 HSGGNEDIKREI---PYDIKVIGGA------DDRIPGIT----------------RGLKDGETVTVGGLEVRCLHTPGHT 118 (265)
T ss_pred ccCcHHHHHhhc---cCCcEEecCC------hhcCcccc----------------ccCCCCcEEEECCEEEEEEeCCCcc
Confidence 888888876431 1468888875 11111110 0122 47899999999999999 88
Q ss_pred CCcceEEEEEc-----eEEEeCCCC
Q 025514 142 AGYRSLGFRFG-----NICYISDVS 161 (251)
Q Consensus 142 ~~~~s~gy~i~-----~i~Ys~Dt~ 161 (251)
. ..+.|.+. ..+++|||-
T Consensus 119 ~--~hi~~~~~~~~~e~~iFtGDtl 141 (265)
T KOG0813|consen 119 A--GHICYYVTESTGERAIFTGDTL 141 (265)
T ss_pred C--CcEEEEeecCCCCCeEEeCCce
Confidence 7 77777776 588888883
No 49
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=82.25 E-value=13 Score=32.90 Aligned_cols=155 Identities=18% Similarity=0.137 Sum_probs=85.6
Q ss_pred eeeeeecCcEEEEecCC------------------------------CCCCChhhHhhhccCCCCccEEeCHHHHHHHHH
Q 025514 47 QACLQSSFSTIALFVGF------------------------------LPMGLDDLRDWTNNVQRHIPIYVAMRDFEVMKK 96 (251)
Q Consensus 47 ~~ll~~~~~~iLiD~G~------------------------------Hi~GL~~l~~~~~~~~~~l~iygp~~~~~~l~~ 96 (251)
+++++.++..+++|.|. |++|++.+..- ..-+.+-++.+...-...+
T Consensus 56 a~li~~~~~~~l~dtg~~~~~~~iip~Lk~~GV~~iD~lIlTH~d~DHiGg~~~vl~~--~~v~~~~i~~~~~~~~~~~- 132 (293)
T COG2333 56 ATLIRSEGKTILYDTGNSMGQDVIIPYLKSLGVRKLDQLILTHPDADHIGGLDEVLKT--IKVPELWIYAGSDSTSTFV- 132 (293)
T ss_pred EEEEeeCCceEEeecCcccCceeehhhHhHcCCccccEEEeccCCccccCCHHHHHhh--CCCCcEEEeCCCCccchhh-
Confidence 36777778899999996 77777766531 1233455555543211111
Q ss_pred hCCeeeecCCCCCCCcccceeEEEe-cCceeEeCCEEEEEE-EeccC---CCcceEEEEEc----eEEEeCCCCCCCcch
Q 025514 97 THYYLVDTSGIIPGAAVSELQFNII-DEEPFTVQDLKITPL-PVWHG---AGYRSLGFRFG----NICYISDVSEIPEET 167 (251)
Q Consensus 97 ~~~~~~~~~~~~~g~~~~~~~~~~i-~~~~~~~~~~~I~~~-~v~H~---~~~~s~gy~i~----~i~Ys~Dt~~~~e~~ 167 (251)
+ .. .....+.. .++.+.+++..++.+ |.... .+..+...+++ ++.++||.+.-. +
T Consensus 133 ----~-~~---------~~~~~~~~~~G~~~~~~~~~f~vl~P~~~~~~~~N~~S~Vl~v~~g~~s~LlTGD~e~~~-E- 196 (293)
T COG2333 133 ----L-RD---------AGIPVRSCKAGDSWQWGGVVFQVLSPVGGVSDDLNNDSCVLRVTFGGNSFLLTGDLEEKG-E- 196 (293)
T ss_pred ----h-hh---------cCCceeccccCceEEECCeEEEEEcCCccccccccCcceEEEEEeCCeeEEEecCCCchh-H-
Confidence 0 00 01222222 356788888888766 44331 23577777887 999999997643 3
Q ss_pred hhhhCC-----CcEEEEcccCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEccCCCC----ChHHHHHHHHh
Q 025514 168 YPFLQD-----CEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLM----DHEKVNEELLK 229 (251)
Q Consensus 168 ~~~~~~-----~DlLi~E~~~~~~~~~~H~t~~ea~~~a~~~~~k~lvltH~s~~~----~~~~l~~~l~~ 229 (251)
..+++. +|+|.. +|.| +..+....++++.++|- .+.--...+ ++.+..+++++
T Consensus 197 ~~l~~~~~~l~~dVLkV-------~HHG-S~tSss~~Fl~~v~Pk~-AliS~G~~N~yghPh~~Vl~rl~~ 258 (293)
T COG2333 197 KLLKKYGPDLRADVLKV-------GHHG-SKTSSSLAFLEAVKPKV-ALISSGRNNRYGHPHQEVLERLQK 258 (293)
T ss_pred HHHHhhCCCccceEEEe-------ccCC-ccccCcHHHHHhcCCcE-EEEEeeccCCCCCCcHHHHHHHHh
Confidence 333332 444432 2222 12233567788889975 444444433 35555555654
No 50
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=69.89 E-value=9.9 Score=37.44 Aligned_cols=58 Identities=14% Similarity=0.106 Sum_probs=43.0
Q ss_pred CCCCCCHHHHHHHHHhcCC--CeEEEEccCCCCChHHHHHHHHhhhhcCCCcEEEeecCeEEec
Q 025514 188 SSTHFGLPRALEEVRKIQP--KRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPV 249 (251)
Q Consensus 188 ~~~H~t~~ea~~~a~~~~~--k~lvltH~s~~~~~~~l~~~l~~~~~~~~~~v~~A~DG~~i~l 249 (251)
-.+|++..|..++++++++ ++++++|=.+.. -..+.+.+.+ .++.++.+...|.+|+|
T Consensus 570 fSaHaD~~~L~~~v~~~~p~p~~v~lvHGe~~~-~~~la~~l~~---~~~~~~~~P~~~e~~~~ 629 (630)
T TIGR03675 570 FSGHSDRRQLMNYVRRMQPKPEKILLNHGEPSK-ILDLASSIYK---KFNIETYAPKNLETIRL 629 (630)
T ss_pred ccccCCHHHHHHHHHhcCCCCCEEEEEcCCHHH-HHHHHHHHHH---HhCCcEEeCCCCCEEEe
Confidence 4789999999999999965 999999944422 3455555544 23346788899998876
No 51
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=67.28 E-value=12 Score=30.85 Aligned_cols=95 Identities=15% Similarity=0.040 Sum_probs=48.9
Q ss_pred heeeeeecCcEEEEecCC-------C---CCCChhh--------Hhh-hccCCCCccEEeCHHHHHHHHHhCCeeeecCC
Q 025514 46 LQACLQSSFSTIALFVGF-------L---PMGLDDL--------RDW-TNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSG 106 (251)
Q Consensus 46 ~~~ll~~~~~~iLiD~G~-------H---i~GL~~l--------~~~-~~~~~~~l~iygp~~~~~~l~~~~~~~~~~~~ 106 (251)
.|+++-.++++||||.-+ | .+|+..+ +.- ...+....+||+|++..+ .+++.-+
T Consensus 24 ng~~~~~p~GnilIDP~~ls~~~~~~l~a~ggv~~IvLTn~dHvR~A~~ya~~~~a~i~~p~~d~~----~~p~~~D--- 96 (199)
T PF14597_consen 24 NGHAWRRPEGNILIDPPPLSAHDWKHLDALGGVAWIVLTNRDHVRAAEDYAEQTGAKIYGPAADAA----QFPLACD--- 96 (199)
T ss_dssp EEEEE--TT--EEES-----HHHHHHHHHTT--SEEE-SSGGG-TTHHHHHHHS--EEEEEGGGCC----C-SS--S---
T ss_pred eeEEEEcCCCCEEecCccccHHHHHHHHhcCCceEEEEeCChhHhHHHHHHHHhCCeeeccHHHHh----hCCCCCc---
Confidence 456777789999999987 2 2343332 110 012345678888876532 1111100
Q ss_pred CCCCCcccceeEEEecCceeEeCCEEEEEEEeccCCCcceEEEEEc-eEEEeCCCC
Q 025514 107 IIPGAAVSELQFNIIDEEPFTVQDLKITPLPVWHGAGYRSLGFRFG-NICYISDVS 161 (251)
Q Consensus 107 ~~~g~~~~~~~~~~i~~~~~~~~~~~I~~~~v~H~~~~~s~gy~i~-~i~Ys~Dt~ 161 (251)
+-+.+...-.+|+++..++-.|+. ..+++.++ ++.++||-.
T Consensus 97 ------------~~l~dge~i~~g~~vi~l~G~ktp--GE~ALlled~vLi~GDl~ 138 (199)
T PF14597_consen 97 ------------RWLADGEEIVPGLWVIHLPGSKTP--GELALLLEDRVLITGDLL 138 (199)
T ss_dssp ------------EEE-TT-BSSTTEEEEEE-SSSST--TEEEEEETTTEEEESSSE
T ss_pred ------------cccccCCCccCceEEEEcCCCCCC--ceeEEEeccceEEeccee
Confidence 112222234689999999988988 78899988 999999953
No 52
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=64.21 E-value=15 Score=34.02 Aligned_cols=58 Identities=16% Similarity=0.059 Sum_probs=41.5
Q ss_pred CCCCCCHHHHHHHHHhcCCCeEEEEccCCCCChHHHHHHHHhhhhcCC---CcEEEeecCeEEecc
Q 025514 188 SSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEG---LDVQLSYDGLRVPVM 250 (251)
Q Consensus 188 ~~~H~t~~ea~~~a~~~~~k~lvltH~s~~~~~~~l~~~l~~~~~~~~---~~v~~A~DG~~i~l~ 250 (251)
..||.+-+|..++.+.+++|.++.+|=..+. .....+.+++ .| .++.+.+.|.+++++
T Consensus 358 ~SgHa~~~dl~~~i~~~~Pk~~ipvHge~~~-~~~~~~~a~~----~g~~~~~~~~~~nG~~~~~~ 418 (422)
T TIGR00649 358 VSGHASQEDHKLLLRLLKPKYIIPVHGEYRM-LINHTKLAEE----EGYPGENIFILRNGDVLEIN 418 (422)
T ss_pred ecCCCCHHHHHHHHHHhCCCEEEecCCcHHH-HHHHHHHHHH----cCCCcccEEEecCCcEEEec
Confidence 4799999999999999999999999933222 1222222322 22 268899999998874
No 53
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=63.21 E-value=18 Score=33.64 Aligned_cols=64 Identities=23% Similarity=0.185 Sum_probs=47.3
Q ss_pred eEEEeCCCCCC--CcchhhhhC--CCcEEEEcccCCCCCCCCCCCHHHHHH--------HHHhcCCCeEEEEccCCCCC
Q 025514 153 NICYISDVSEI--PEETYPFLQ--DCEILIMDALRPDRSSSTHFGLPRALE--------EVRKIQPKRTLFIGMMHLMD 219 (251)
Q Consensus 153 ~i~Ys~Dt~~~--~e~~~~~~~--~~DlLi~E~~~~~~~~~~H~t~~ea~~--------~a~~~~~k~lvltH~s~~~~ 219 (251)
.++||||-+|- +.++.+.++ |.-++=.|+.+. .|.|-|+++.+. ..++.|+++++|.-+|-..|
T Consensus 263 av~~SGDGGWr~lDk~v~~~l~~~gvpVvGvdsLRY---fW~~rtPe~~a~Dl~r~i~~y~~~w~~~~~~liGySfGAD 338 (456)
T COG3946 263 AVFYSGDGGWRDLDKEVAEALQKQGVPVVGVDSLRY---FWSERTPEQIAADLSRLIRFYARRWGAKRVLLIGYSFGAD 338 (456)
T ss_pred EEEEecCCchhhhhHHHHHHHHHCCCceeeeehhhh---hhccCCHHHHHHHHHHHHHHHHHhhCcceEEEEeecccch
Confidence 69999999873 445556664 566676777643 688888888765 34557999999999998764
No 54
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=58.38 E-value=23 Score=29.18 Aligned_cols=42 Identities=12% Similarity=0.198 Sum_probs=34.8
Q ss_pred EEEecCceeEeCCEEEEEEEec-cCCCcceEEEEEc--eEEEeCCCC
Q 025514 118 FNIIDEEPFTVQDLKITPLPVW-HGAGYRSLGFRFG--NICYISDVS 161 (251)
Q Consensus 118 ~~~i~~~~~~~~~~~I~~~~v~-H~~~~~s~gy~i~--~i~Ys~Dt~ 161 (251)
.+.-+++.+++|++.++....+ |.. .|+-|+.. ..+|+||+-
T Consensus 98 ~~l~~Gd~i~~G~~~le~ratPGHT~--GC~TyV~~d~~~aFTGDal 142 (237)
T KOG0814|consen 98 LHLEDGDIIEIGGLKLEVRATPGHTN--GCVTYVEHDLRMAFTGDAL 142 (237)
T ss_pred cccCCCCEEEEccEEEEEecCCCCCC--ceEEEEecCcceeeeccee
Confidence 3444568899999999988887 777 89999998 899999973
No 55
>PRK09875 putative hydrolase; Provisional
Probab=57.57 E-value=23 Score=31.35 Aligned_cols=36 Identities=11% Similarity=0.012 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHhcCC--CeEEEEccCCCCChHHHHHHHH
Q 025514 192 FGLPRALEEVRKIQP--KRTLFIGMMHLMDHEKVNEELL 228 (251)
Q Consensus 192 ~t~~ea~~~a~~~~~--k~lvltH~s~~~~~~~l~~~l~ 228 (251)
+..++ ++++++.|+ +|+++.|.....|.+.+.+.++
T Consensus 164 ~g~e~-l~il~e~Gvd~~rvvi~H~d~~~d~~~~~~l~~ 201 (292)
T PRK09875 164 MGLEQ-LALLQAHGVDLSRVTVGHCDLKDNLDNILKMID 201 (292)
T ss_pred chHHH-HHHHHHcCcCcceEEEeCCCCCCCHHHHHHHHH
Confidence 44444 778888887 8999999986666555554443
No 56
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=51.22 E-value=27 Score=29.03 Aligned_cols=64 Identities=17% Similarity=0.157 Sum_probs=45.1
Q ss_pred eEEEeCCCCCC--Ccchhhhh--CCCcEEEEcccCCCCCCCCCCCHHHHHHHH--------HhcCCCeEEEEccCCCCC
Q 025514 153 NICYISDVSEI--PEETYPFL--QDCEILIMDALRPDRSSSTHFGLPRALEEV--------RKIQPKRTLFIGMMHLMD 219 (251)
Q Consensus 153 ~i~Ys~Dt~~~--~e~~~~~~--~~~DlLi~E~~~~~~~~~~H~t~~ea~~~a--------~~~~~k~lvltH~s~~~~ 219 (251)
.++||||-+|- +..+.+.+ +|.-++-+|+... -|.+-|++|++.-+ ++.+.++++|+-+|-..|
T Consensus 5 ~v~~SGDgGw~~~d~~~a~~l~~~G~~VvGvdsl~Y---fw~~rtP~~~a~Dl~~~i~~y~~~w~~~~vvLiGYSFGAD 80 (192)
T PF06057_consen 5 AVFFSGDGGWRDLDKQIAEALAKQGVPVVGVDSLRY---FWSERTPEQTAADLARIIRHYRARWGRKRVVLIGYSFGAD 80 (192)
T ss_pred EEEEeCCCCchhhhHHHHHHHHHCCCeEEEechHHH---HhhhCCHHHHHHHHHHHHHHHHHHhCCceEEEEeecCCch
Confidence 48899999874 23444444 4688888888643 45677777776543 455899999999998764
No 57
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=39.19 E-value=1.5e+02 Score=28.95 Aligned_cols=95 Identities=11% Similarity=-0.027 Sum_probs=56.3
Q ss_pred eEEEeCCCCCCCcchh----hhhCCCcEEEEcccCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEccCCCCChHHHHHHH-
Q 025514 153 NICYISDVSEIPEETY----PFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEEL- 227 (251)
Q Consensus 153 ~i~Ys~Dt~~~~e~~~----~~~~~~DlLi~E~~~~~~~~~~H~t~~ea~~~a~~~~~k~lvltH~s~~~~~~~l~~~l- 227 (251)
++++++...|-.+... +.+....+-+....+..-...||.+.+|...+.+.+++|.++-+|=..++ -...+++
T Consensus 329 ~vIfss~~ipgne~~~~~~~n~l~~~g~~i~~~~~~~~hvSGHas~eel~~mi~~l~Pky~iPvHGeyr~--~~~~a~la 406 (555)
T COG0595 329 TVIFSSSPIPGNEAAVYRLLNRLYKAGAKVITGGDKKVHVSGHASREELKLMINLLRPKYLIPVHGEYRM--LVAHAKLA 406 (555)
T ss_pred eEEEeccCcCCcHHHHHHHHHHHHhcCcEEeecccceeEecCCCChHHHHHHHHhhCCceecccCCCcHH--HHHHHHHH
Confidence 7888887765322222 22222333344433321134799999999999999999999999943322 1111112
Q ss_pred HhhhhcCCCcEEEeecCeEEecc
Q 025514 228 LKLMETEGLDVQLSYDGLRVPVM 250 (251)
Q Consensus 228 ~~~~~~~~~~v~~A~DG~~i~l~ 250 (251)
.++.. ...++.+.+.|.++++.
T Consensus 407 ~~~G~-~~~~i~i~~nG~v~~l~ 428 (555)
T COG0595 407 EEEGI-PQENIFILRNGDVLELE 428 (555)
T ss_pred HhcCC-CcccEEEecCceEEEec
Confidence 21110 11268899999998874
No 58
>PTZ00175 diphthine synthase; Provisional
Probab=37.77 E-value=1.1e+02 Score=26.74 Aligned_cols=72 Identities=10% Similarity=0.161 Sum_probs=40.6
Q ss_pred CCCCCCCcchhhhhCCCcEEEEcccCC--------------CCC---CCCCCCHHHHHHHHHhcCCCeEEEEccCCCC--
Q 025514 158 SDVSEIPEETYPFLQDCEILIMDALRP--------------DRS---SSTHFGLPRALEEVRKIQPKRTLFIGMMHLM-- 218 (251)
Q Consensus 158 ~Dt~~~~e~~~~~~~~~DlLi~E~~~~--------------~~~---~~~H~t~~ea~~~a~~~~~k~lvltH~s~~~-- 218 (251)
||-..++-+.++.+++||++++|.... .+. ...|+.-+++.++.+.++-+++++.....-.
T Consensus 11 Gdp~lLTlkal~~L~~ADvV~~d~~ts~l~~~~~~~l~~~~gk~~~~~~r~~~e~~~~~ii~~a~~~~Vv~L~~GDP~i~ 90 (270)
T PTZ00175 11 GDEKDITVKGLEAVKSADVVYLESYTSILINSNKEKLEEFYGKPVIEADREMVEEGCDEILEEAKEKNVAFLVVGDPFCA 90 (270)
T ss_pred CCHHHHHHHHHHHHHhCCEEEEecccchhccCCHHHHHHhcCCeeEecCccCHHHHHHHHHHHhCCCCEEEEECCCCCcc
Confidence 455556667889999999999997411 011 1223333333456666654667666655443
Q ss_pred -ChHHHHHHHHh
Q 025514 219 -DHEKVNEELLK 229 (251)
Q Consensus 219 -~~~~l~~~l~~ 229 (251)
.+.++...+.+
T Consensus 91 ~t~~~l~~~~~~ 102 (270)
T PTZ00175 91 TTHTDLYLRAKK 102 (270)
T ss_pred CCHHHHHHHHHH
Confidence 34444444443
No 59
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=37.43 E-value=88 Score=27.21 Aligned_cols=58 Identities=21% Similarity=0.251 Sum_probs=38.4
Q ss_pred EEeCCCCCCCcchhhhhCCCcEEEEcccCCCCCC------CCC---CCHHHHHHHHHhcCCCeEEEEc
Q 025514 155 CYISDVSEIPEETYPFLQDCEILIMDALRPDRSS------STH---FGLPRALEEVRKIQPKRTLFIG 213 (251)
Q Consensus 155 ~Ys~Dt~~~~e~~~~~~~~~DlLi~E~~~~~~~~------~~H---~t~~ea~~~a~~~~~k~lvltH 213 (251)
.+-+|-.- ++++.+.++++|+++|=+....... ... -..+-.++.+++.++|++|+|=
T Consensus 49 ~~~~Di~d-~~~l~~a~~g~d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytS 115 (280)
T PF01073_consen 49 YIQGDITD-PESLEEALEGVDVVFHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTS 115 (280)
T ss_pred EEEecccc-HHHHHHHhcCCceEEEeCccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 66788764 3578899999999999887543110 000 1233455667788999998764
No 60
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=35.22 E-value=2e+02 Score=24.81 Aligned_cols=71 Identities=11% Similarity=0.085 Sum_probs=46.4
Q ss_pred CCCCCCcchhhhhCCCcEEEEcccCCCC------------CCCCCCCHHHHHHHHHhc--CCCeEEEEccCCCCChHHHH
Q 025514 159 DVSEIPEETYPFLQDCEILIMDALRPDR------------SSSTHFGLPRALEEVRKI--QPKRTLFIGMMHLMDHEKVN 224 (251)
Q Consensus 159 Dt~~~~e~~~~~~~~~DlLi~E~~~~~~------------~~~~H~t~~ea~~~a~~~--~~k~lvltH~s~~~~~~~l~ 224 (251)
|-.-++=+-.+++++||+.|.-.+..+. .+..+|+++|..++..++ .-|.++=.|-...--+-.+.
T Consensus 14 dpdLiTvkg~~ll~~advviYAGSLV~~elL~~~~~~aei~nSa~~tLeeIi~~m~~a~~~Gk~VvRLhSGDpsiYgA~~ 93 (254)
T COG2875 14 DPDLITVKGQRLLEKADVVIYAGSLVPPELLEYCRPDAEIVNSASLTLEEIIDLMVDAVREGKDVVRLHSGDPSIYGALA 93 (254)
T ss_pred CcceeeehHHHHHhhCCEEEECCCcCCHHHHhhcCCCCEEEecCcCCHHHHHHHHHHHHHcCCeEEEeecCChhHHHHHH
Confidence 4333333556788999999987766542 247899999999987665 23677777865433344454
Q ss_pred HHHHh
Q 025514 225 EELLK 229 (251)
Q Consensus 225 ~~l~~ 229 (251)
+++++
T Consensus 94 EQm~~ 98 (254)
T COG2875 94 EQMRE 98 (254)
T ss_pred HHHHH
Confidence 44443
No 61
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=34.56 E-value=43 Score=30.44 Aligned_cols=46 Identities=24% Similarity=0.153 Sum_probs=39.5
Q ss_pred eeeeeeccccCCCCCCChhhhheeeeeecCcEEEEecCCCCCCChhhHh
Q 025514 25 ISVYTSQISLPTSGFFPFKRILQACLQSSFSTIALFVGFLPMGLDDLRD 73 (251)
Q Consensus 25 ~~~~~s~~~~~~~~~~~~~~~~~~ll~~~~~~iLiD~G~Hi~GL~~l~~ 73 (251)
|.=||-+.+++.+||-++. .-+++.+-.+|||=||.-+.||+.+..
T Consensus 199 iiEGTvasVPPqGGRKHP~---Qe~iqvDT~NILFIcgGAF~GlekiI~ 244 (408)
T COG1219 199 IIEGTVASVPPQGGRKHPQ---QEFIQVDTSNILFICGGAFAGLEKIIK 244 (408)
T ss_pred HHcCceeccCCCCCCCCCc---cceEEEcccceeEEeccccccHHHHHH
Confidence 4559999999999999987 467888889999999999999988763
No 62
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=33.00 E-value=47 Score=24.55 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.3
Q ss_pred CCCCCHHHHHHHHHhcCCCeEEEE
Q 025514 189 STHFGLPRALEEVRKIQPKRTLFI 212 (251)
Q Consensus 189 ~~H~t~~ea~~~a~~~~~k~lvlt 212 (251)
.-|+++.|..++++.+++++++=|
T Consensus 82 SeHSSf~EL~~Fv~~l~P~~IiPt 105 (110)
T PF07522_consen 82 SEHSSFSELKEFVSFLKPKKIIPT 105 (110)
T ss_pred ccCCCHHHHHHHHHhcCCcEEEcc
Confidence 359999999999999999998754
No 63
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=30.97 E-value=2e+02 Score=22.63 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=19.8
Q ss_pred CHHHHHHHHHhcCCCeEEEE---ccCCCC
Q 025514 193 GLPRALEEVRKIQPKRTLFI---GMMHLM 218 (251)
Q Consensus 193 t~~ea~~~a~~~~~k~lvlt---H~s~~~ 218 (251)
..++...++++.+++++++. |+|...
T Consensus 59 av~eI~~~a~kv~~~~ivlyPyAHLSs~L 87 (138)
T PF08915_consen 59 AVEEIKWVAKKVKAKRIVLYPYAHLSSSL 87 (138)
T ss_dssp HHHHHHHHHHHTT-SEEEEEE-GGGSSSB
T ss_pred HHHHHHHHHHhcCCCEEEEeCcccccCCc
Confidence 35677888999999999987 666665
No 64
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=30.47 E-value=85 Score=28.03 Aligned_cols=59 Identities=15% Similarity=0.010 Sum_probs=36.1
Q ss_pred CCcEEEEcccCCCCCCCCCCCHHHHHHHHHhcCC--CeEEEEccCCCCChHHHHHHHHhhhhcCCCcEEEeecCe
Q 025514 173 DCEILIMDALRPDRSSSTHFGLPRALEEVRKIQP--KRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGL 245 (251)
Q Consensus 173 ~~DlLi~E~~~~~~~~~~H~t~~ea~~~a~~~~~--k~lvltH~s~~~~~~~l~~~l~~~~~~~~~~v~~A~DG~ 245 (251)
|+-+.+|-.. +--...|.++++++.|+ +|+++.|+....|.+.+.+.++. ++.+.+|..
T Consensus 155 G~pI~~H~~~-------g~~~~~e~~~il~e~Gv~~~rvvigH~D~~~D~~y~~~la~~-------G~~l~~D~~ 215 (308)
T PF02126_consen 155 GAPISTHTGR-------GTRMGLEQLDILEEEGVDPSRVVIGHMDRNPDLDYHRELADR-------GVYLEFDTI 215 (308)
T ss_dssp T-EEEEEEST-------TGTCHHHHHHHHHHTT--GGGEEETSGGGST-HHHHHHHHHT-------T-EEEETTT
T ss_pred CCeEEEcCCC-------CCcCHHHHHHHHHHcCCChhHeEEeCCCCCCCHHHHHHHHhc-------CCEEEecCC
Confidence 6777776542 11146678888888874 79999999965565555544443 566666654
No 65
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=29.57 E-value=1.3e+02 Score=21.59 Aligned_cols=53 Identities=8% Similarity=0.060 Sum_probs=38.1
Q ss_pred hhhhhCCCcEEEEcccCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEccCCCCChHHHHHHHH
Q 025514 167 TYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELL 228 (251)
Q Consensus 167 ~~~~~~~~DlLi~E~~~~~~~~~~H~t~~ea~~~a~~~~~k~lvltH~s~~~~~~~l~~~l~ 228 (251)
+-..++++|++|+=..+. +|-....+.+.|++.+.. +++.|-. ....+.+.+.
T Consensus 42 l~~~i~~aD~VIv~t~~v-----sH~~~~~vk~~akk~~ip-~~~~~~~---~~~~l~~~l~ 94 (97)
T PF10087_consen 42 LPSKIKKADLVIVFTDYV-----SHNAMWKVKKAAKKYGIP-IIYSRSR---GVSSLERALE 94 (97)
T ss_pred HHHhcCCCCEEEEEeCCc-----ChHHHHHHHHHHHHcCCc-EEEECCC---CHHHHHHHHH
Confidence 666778899999877666 699999999999998874 6666622 2345554444
No 66
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=29.03 E-value=1.8e+02 Score=25.48 Aligned_cols=73 Identities=15% Similarity=0.216 Sum_probs=41.0
Q ss_pred eEEEeCCCCCCCcchhhhh-CCCcEEEEcccCCCCC---CCCCCCHHHHHHHHHhc-------CCCeEEEEccCCCCChH
Q 025514 153 NICYISDVSEIPEETYPFL-QDCEILIMDALRPDRS---SSTHFGLPRALEEVRKI-------QPKRTLFIGMMHLMDHE 221 (251)
Q Consensus 153 ~i~Ys~Dt~~~~e~~~~~~-~~~DlLi~E~~~~~~~---~~~H~t~~ea~~~a~~~-------~~k~lvltH~s~~~~~~ 221 (251)
++.|.-+ +++..+.+ .|+|+++.-.-..... .....+.+++++.++++ +++-++|.|=.|-.+++
T Consensus 153 T~~yvf~----~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~ 228 (268)
T PF09370_consen 153 TTAYVFN----EEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATPE 228 (268)
T ss_dssp E--EE-S----HHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SHH
T ss_pred eeeeecC----HHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHH
Confidence 5555544 34455555 3899999988766542 24577888888876554 67899999988877788
Q ss_pred HHHHHHHh
Q 025514 222 KVNEELLK 229 (251)
Q Consensus 222 ~l~~~l~~ 229 (251)
+.+..++.
T Consensus 229 D~~~~l~~ 236 (268)
T PF09370_consen 229 DAQYVLRN 236 (268)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 87766665
No 67
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=28.69 E-value=56 Score=21.95 Aligned_cols=18 Identities=11% Similarity=-0.167 Sum_probs=16.4
Q ss_pred heeeeeecCcEEEE-ecCC
Q 025514 46 LQACLQSSFSTIAL-FVGF 63 (251)
Q Consensus 46 ~~~ll~~~~~~iLi-D~G~ 63 (251)
.|++|..++.+.|| +||+
T Consensus 13 p~l~l~~d~~rYlFGn~gE 31 (63)
T PF13691_consen 13 PSLLLFFDSRRYLFGNCGE 31 (63)
T ss_pred CEEEEEeCCceEEeccCCc
Confidence 56999999999999 9997
No 68
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=28.51 E-value=1.6e+02 Score=28.67 Aligned_cols=40 Identities=13% Similarity=0.197 Sum_probs=29.8
Q ss_pred CCCCCHHHHHHHHHhcCCCeEEEEccCCCCChHHHHHHHHh
Q 025514 189 STHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLK 229 (251)
Q Consensus 189 ~~H~t~~ea~~~a~~~~~k~lvltH~s~~~~~~~l~~~l~~ 229 (251)
..|....|..++++++.+++++|+| ++.++-..|+..+..
T Consensus 396 aAhvdy~q~s~fi~~i~~~~lilVH-GE~neM~rLKs~L~~ 435 (668)
T KOG1137|consen 396 AAHVDYLQNSEFIADITPPHLILVH-GEANEMMRLKSALEA 435 (668)
T ss_pred eechhhhhhHHHHHHhCCCeEEEEe-cccchhHHHHHHHHH
Confidence 5799999999999999999999999 222322445544443
No 69
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=28.04 E-value=1.7e+02 Score=26.80 Aligned_cols=57 Identities=12% Similarity=0.201 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHhcCCCeEEEEccCCCCChHHHHHHHHhhhhcCCCcEEEeecCeEEec
Q 025514 189 STHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPV 249 (251)
Q Consensus 189 ~~H~t~~ea~~~a~~~~~k~lvltH~s~~~~~~~l~~~l~~~~~~~~~~v~~A~DG~~i~l 249 (251)
..|.+..-..++.+...+|+++|+|=.. -.-+-+++.+.+ +++.++.+.-.|..+.+
T Consensus 389 SaHaDAkGIm~li~~csPknVmlVHGE~-~kM~~Lk~ki~~---e~~ip~~mPaNGetv~i 445 (501)
T KOG1136|consen 389 SAHADAKGIMQLIKQCSPKNVMLVHGEK-SKMKFLKEKIES---EFDIPTFMPANGETVVI 445 (501)
T ss_pred ccccCchhHHHHHHhcCcceEEEEeccc-hhhHHHHHhhHh---hcCCceeeCCCCCEEEe
Confidence 6799999999999999999999999322 112334444544 24455666666665543
No 70
>PF01339 CheB_methylest: CheB methylesterase; InterPro: IPR000673 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the signal transduction response regulator CheB involved in chemotaxis. CheB methylesterase is responsible for removing the methyl group from the gamma-glutamyl methyl ester residues in the methyl-accepting chemotaxis proteins (MCP). The enzyme catalyses the reaction: protein L-glutamate O-methyl ester and water is converted to protein L-glutamate and methanol. CheB is regulated through phosphorylation by CheA. The N-terminal region of the protein is similar to that of other regulatory components of sensory transduction systems. The Myxococcus xanthus FrzG protein also belongs to this family, and is required for the normal aggregation of cells during fruiting body formation.; GO: 0000156 two-component response regulator activity, 0008984 protein-glutamate methylesterase activity, 0000160 two-component signal transduction system (phosphorelay), 0006935 chemotaxis, 0005737 cytoplasm; PDB: 1CHD_A 1A2O_B 3SFT_A.
Probab=26.94 E-value=67 Score=26.21 Aligned_cols=40 Identities=18% Similarity=0.144 Sum_probs=20.1
Q ss_pred CCCeEEEEccCCCCChHHHHHHHHhhhhcCCCcEEEeecCeEEe
Q 025514 205 QPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVP 248 (251)
Q Consensus 205 ~~k~lvltH~s~~~~~~~l~~~l~~~~~~~~~~v~~A~DG~~i~ 248 (251)
+.--++..|+++.. ...+.+.|.+. ...+|..+.||+.++
T Consensus 26 ~~~ivivqH~~~~~-~~~l~~~L~~~---t~l~V~~a~~g~~l~ 65 (182)
T PF01339_consen 26 PAAIVIVQHMPPGF-TSSLAERLARH---TSLPVREAEDGEPLE 65 (182)
T ss_dssp SSEEEEEE---TTH-HHHHHHHHHHH---SSSEEEE--TT-B--
T ss_pred CceEEEEECCCCCc-chHHHHHHhCc---CCCeEEEcCCCCEec
Confidence 34567888999876 44555555542 234788899988764
No 71
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=25.24 E-value=55 Score=25.65 Aligned_cols=18 Identities=6% Similarity=-0.193 Sum_probs=14.4
Q ss_pred hheeeeeecCcEEEEecC
Q 025514 45 ILQACLQSSFSTIALFVG 62 (251)
Q Consensus 45 ~~~~ll~~~~~~iLiD~G 62 (251)
..|++++.++.+||+|+.
T Consensus 7 ha~~~ie~~g~~iliDP~ 24 (163)
T PF13483_consen 7 HASFLIETGGKRILIDPW 24 (163)
T ss_dssp TTEEEEEETTEEEEES--
T ss_pred eeEEEEEECCEEEEECCC
Confidence 357999999999999997
No 72
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=22.87 E-value=1.7e+02 Score=26.18 Aligned_cols=37 Identities=11% Similarity=-0.092 Sum_probs=25.1
Q ss_pred CHHHHHHHHHhcC--CCeEEEEccCCCCChHHHHHHHHh
Q 025514 193 GLPRALEEVRKIQ--PKRTLFIGMMHLMDHEKVNEELLK 229 (251)
Q Consensus 193 t~~ea~~~a~~~~--~k~lvltH~s~~~~~~~l~~~l~~ 229 (251)
-.-|.+++..+-+ ..++.+-|+.+.-+.-..++.+..
T Consensus 177 ~g~eq~~il~~egvdl~~v~igH~d~n~dd~~y~~~l~~ 215 (316)
T COG1735 177 MGLEQLRILAEEGVDLRKVSIGHMDPNTDDVYYQKKLAD 215 (316)
T ss_pred hhHHHHHHHHHcCCChhHeeEeccCCCCChHHHHHHHHh
Confidence 3344555666655 479999999987766566666665
No 73
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=22.55 E-value=38 Score=21.06 Aligned_cols=9 Identities=78% Similarity=0.981 Sum_probs=6.9
Q ss_pred ccccCCCCe
Q 025514 6 GTVRPSPSS 14 (251)
Q Consensus 6 ~~~~~~~~~ 14 (251)
|||.||.||
T Consensus 30 GtVaPSSss 38 (46)
T PF02402_consen 30 GTVAPSSSS 38 (46)
T ss_pred ceECCCccc
Confidence 788888764
No 74
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=22.11 E-value=2.6e+02 Score=26.33 Aligned_cols=50 Identities=10% Similarity=0.234 Sum_probs=25.4
Q ss_pred CCcEEEEcccCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEccCCCCChHHHHH
Q 025514 173 DCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNE 225 (251)
Q Consensus 173 ~~DlLi~E~~~~~~~~~~H~t~~ea~~~a~~~~~k~lvltH~s~~~~~~~l~~ 225 (251)
+.|++++|+.-.. +......++..+++++..+..++|+ ++......++.+
T Consensus 320 ~~DvVLIDTaGRs--~kd~~lm~EL~~~lk~~~PdevlLV-LsATtk~~d~~~ 369 (436)
T PRK11889 320 RVDYILIDTAGKN--YRASETVEEMIETMGQVEPDYICLT-LSASMKSKDMIE 369 (436)
T ss_pred CCCEEEEeCcccc--CcCHHHHHHHHHHHhhcCCCeEEEE-ECCccChHHHHH
Confidence 5799999975321 1112234444444444455555565 555444444443
No 75
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=21.23 E-value=4.2e+02 Score=25.42 Aligned_cols=63 Identities=14% Similarity=0.151 Sum_probs=39.5
Q ss_pred ceEEEEEceEEEeCCCCCCCc---chhh-hhCCCcEEEEcccCCCCCCCCCCCHHHHHHHHHhc------CCCeEEEEc
Q 025514 145 RSLGFRFGNICYISDVSEIPE---ETYP-FLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKI------QPKRTLFIG 213 (251)
Q Consensus 145 ~s~gy~i~~i~Ys~Dt~~~~e---~~~~-~~~~~DlLi~E~~~~~~~~~~H~t~~ea~~~a~~~------~~k~lvltH 213 (251)
..||+.++-=.+.+|-.--.. ++++ +++|+++||.|-- +..+|++|+.++.+.+ |-.-++.||
T Consensus 126 ~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEP------TaVLTP~E~~~lf~~l~~l~~~G~tIi~ITH 198 (501)
T COG3845 126 ERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEP------TAVLTPQEADELFEILRRLAAEGKTIIFITH 198 (501)
T ss_pred HHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCC------cccCCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 456666664455556531111 2333 4579999999853 5789999998886554 334556666
No 76
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=21.17 E-value=3.9e+02 Score=24.76 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=17.1
Q ss_pred eEEEeCCCCCCCcchhh-hhCCCcEEEEccc
Q 025514 153 NICYISDVSEIPEETYP-FLQDCEILIMDAL 182 (251)
Q Consensus 153 ~i~Ys~Dt~~~~e~~~~-~~~~~DlLi~E~~ 182 (251)
.++|+++-.-.. .++. +.+.=|+++.|..
T Consensus 102 al~f~SGy~AN~-~~i~~l~~~~dli~~D~l 131 (388)
T COG0156 102 ALLFSSGFVANL-GLLSALLKKGDLIFSDEL 131 (388)
T ss_pred EEEEcccchhHH-HHHHHhcCCCcEEEEech
Confidence 678877654322 3443 3345788888764
No 77
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.90 E-value=97 Score=27.69 Aligned_cols=48 Identities=19% Similarity=0.292 Sum_probs=34.3
Q ss_pred hhhCC-CcE-EEEcccCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEccCCC
Q 025514 169 PFLQD-CEI-LIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHL 217 (251)
Q Consensus 169 ~~~~~-~Dl-Li~E~~~~~~~~~~H~t~~ea~~~a~~~~~k~lvltH~s~~ 217 (251)
+++++ .|+ ||++.+-.++.-|.+|++++|.+++++ ++|-++..-|.+.
T Consensus 111 KwlQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arE-NaKDIia~GFDp~ 160 (397)
T KOG2145|consen 111 KWLQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARE-NAKDIIAVGFDPK 160 (397)
T ss_pred HHHHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHh-cccceEEeccCCc
Confidence 34443 344 677877666677999999999999876 5566776666664
No 78
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=20.41 E-value=1.7e+02 Score=26.21 Aligned_cols=66 Identities=8% Similarity=0.103 Sum_probs=39.3
Q ss_pred EEceEEEeCC-CCCCCcchhhhhCCCcEEEEcccCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEccCC
Q 025514 150 RFGNICYISD-VSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMH 216 (251)
Q Consensus 150 ~i~~i~Ys~D-t~~~~e~~~~~~~~~DlLi~E~~~~~~~~~~H~t~~ea~~~a~~~~~k~lvltH~s~ 216 (251)
+|+++.|.+- -.+. ++.++.+++||++|+=-...=-..--++-+....+..++.++++++..-+..
T Consensus 152 ~I~~v~l~~~~~~~~-~~a~~AI~~AD~Iv~gPGSlyTSI~P~Llv~gI~eAi~~s~a~kV~v~N~~~ 218 (308)
T cd07187 152 PIKRVFLEPPDPKAN-PEALEAIEEADLIVYGPGSLYTSILPNLLVKGIAEAIRASKAPKVYICNLMT 218 (308)
T ss_pred CceEEEEECCCCCCC-HHHHHHHHhCCEEEECCCccHHHhhhhcCchhHHHHHHhCCCCEEEEecCCC
Confidence 5568888764 5554 4789999999998874221100123355555555555666666665555443
No 79
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=20.38 E-value=1.7e+02 Score=22.96 Aligned_cols=37 Identities=8% Similarity=0.086 Sum_probs=22.9
Q ss_pred CCcEEEEcccCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEccCCC
Q 025514 173 DCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHL 217 (251)
Q Consensus 173 ~~DlLi~E~~~~~~~~~~H~t~~ea~~~a~~~~~k~lvltH~s~~ 217 (251)
++| +|+||+-. ..+-+.+... -+.|+|++++++-+..
T Consensus 87 gvD-iVie~tG~------f~~~~~~~~h-l~~GakkViisap~~~ 123 (149)
T smart00846 87 GVD-IVVECTGK------FTTREKASAH-LKAGAKKVIISAPAKD 123 (149)
T ss_pred CCe-EEEecccc------ccchHHHHHH-HHcCCCEEEeCCCCCC
Confidence 688 78899521 2233333333 3469999999996543
Done!