BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025516
(251 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 83/222 (37%), Gaps = 65/222 (29%)
Query: 38 IEGICLDLSKVKEIPLNPNTFAKMRKLRFLK----------FYSSSFNGENRCKVSHLQD 87
+E + L + ++ +P + + ++R+L S+ +GE++ V +LQ
Sbjct: 129 LETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV-NLQS 187
Query: 88 LRFAEVKYLHWHGYPLKSLPSN-HSAEKLMFLEVPNSDIEQLWNSVKLVIXXXXXXXXXX 146
LR L W G ++SLP++ + + L L++ NS + L
Sbjct: 188 LR------LEWTG--IRSLPASIANLQNLKSLKIRNSPLSAL------------------ 221
Query: 147 XXPAGIFNLEFLTELDLSGCSKLKRLPEISSGN--IGQLFLSGTAIXXXXXXXXXXXXXX 204
PA I +L L ELDL GC+ L+ P I G + +L L
Sbjct: 222 -GPA-IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK------------------ 261
Query: 205 XXXXXDCXXXXXXXXXXXXXXXXXXXXXRGCSNLQRLPDRLA 246
DC RGC NL RLP +A
Sbjct: 262 -----DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298
>pdb|4E41|E Chain E, Structural Basis For The Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted T Cell Receptor
G4
pdb|4E41|J Chain J, Structural Basis For The Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted T Cell Receptor
G4
pdb|4E42|B Chain B, Structural Basis For The Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted T Cell Receptor
G4
pdb|4E42|D Chain D, Structural Basis For The Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted T Cell Receptor
G4
Length = 239
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + + RC
Sbjct: 146 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRC 205
Query: 81 KV 82
+V
Sbjct: 206 QV 207
>pdb|3MV8|E Chain E, Crystal Structure Of The Tk3-Gln55his Tcr In Complex With
Hla- B3501HPVG
Length = 242
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + + RC
Sbjct: 149 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRC 208
Query: 81 KV 82
+V
Sbjct: 209 QV 210
>pdb|3MV7|E Chain E, Crystal Structure Of The Tk3 Tcr In Complex With
Hla-B3501HPVG
Length = 241
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + + RC
Sbjct: 148 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRC 207
Query: 81 KV 82
+V
Sbjct: 208 QV 209
>pdb|3AXL|B Chain B, Murine Valpha 10 Vbeta 8.1 T-Cell Receptor
pdb|3AXL|H Chain H, Murine Valpha 10 Vbeta 8.1 T-Cell Receptor
Length = 238
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + + RC
Sbjct: 146 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRC 205
Query: 81 KV 82
+V
Sbjct: 206 QV 207
>pdb|2EYS|B Chain B, A Structural Basis For Selection And Cross-Species
Reactivity Of The Semi-Invariant Nkt Cell Receptor In
Cd1dGLYCOLIPID RECOGNITION
pdb|2EYT|B Chain B, A Structural Basis For Selection And Cross-Species
Reactivity Of The Semi-Invariant Nkt Cell Receptor In
Cd1dGLYCOLIPID RECOGNITION
pdb|2EYT|D Chain D, A Structural Basis For Selection And Cross-Species
Reactivity Of The Semi-Invariant Nkt Cell Receptor In
Cd1dGLYCOLIPID RECOGNITION
Length = 243
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + + RC
Sbjct: 150 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRC 209
Query: 81 KV 82
+V
Sbjct: 210 QV 211
>pdb|3HUJ|F Chain F, Crystal Structure Of Human Cd1d-Alpha-Galactosylceramide
In Complex With Semi-Invariant Nkt Cell Receptor
pdb|3HUJ|H Chain H, Crystal Structure Of Human Cd1d-Alpha-Galactosylceramide
In Complex With Semi-Invariant Nkt Cell Receptor
pdb|3VWJ|D Chain D, Ternary Crystal Structure Of The Human Nkt Tcr-Cd1d-C20:2
Complex
pdb|3VWK|D Chain D, Ternary Crystal Structure Of The Human Nkt
Tcr-Cd1d-4'deoxy-Alpha- Galactosylceramide Complex
Length = 246
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + + RC
Sbjct: 153 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRC 212
Query: 81 KV 82
+V
Sbjct: 213 QV 214
>pdb|2PO6|D Chain D, Crystal Structure Of Cd1d-lipid-antigen Complexed With
Beta-2- Microglobulin, Nkt15 Alpha-chain And Nkt15
Beta-chain
pdb|2PO6|H Chain H, Crystal Structure Of Cd1d-lipid-antigen Complexed With
Beta-2- Microglobulin, Nkt15 Alpha-chain And Nkt15
Beta-chain
Length = 244
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + + RC
Sbjct: 151 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRC 210
Query: 81 KV 82
+V
Sbjct: 211 QV 212
>pdb|4GG6|F Chain F, Protein Complex
pdb|4GG6|H Chain H, Protein Complex
pdb|4GG8|F Chain F, Immune Receptor
pdb|4GG8|B Chain B, Immune Receptor
Length = 245
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + + RC
Sbjct: 152 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRC 211
Query: 81 KV 82
+V
Sbjct: 212 QV 213
>pdb|3RUG|F Chain F, Crystal Structure Of Valpha10-Vbeta8.1 Nkt Tcr In Complex
With Cd1d- Alphaglucosylceramide (C20:2)
pdb|3RUG|H Chain H, Crystal Structure Of Valpha10-Vbeta8.1 Nkt Tcr In Complex
With Cd1d- Alphaglucosylceramide (C20:2)
Length = 241
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + + RC
Sbjct: 148 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRC 207
Query: 81 KV 82
+V
Sbjct: 208 QV 209
>pdb|3MV9|E Chain E, Crystal Structure Of The Tk3-Gln55ala Tcr In Complex With
Hla- B3501HPVG
Length = 241
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + + RC
Sbjct: 148 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRC 207
Query: 81 KV 82
+V
Sbjct: 208 QV 209
>pdb|3TJH|D Chain D, 42f3-P3a1H2-Ld Complex
Length = 254
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + + RC
Sbjct: 151 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRC 210
Query: 81 KV 82
+V
Sbjct: 211 QV 212
>pdb|3FFC|E Chain E, Crystal Structure Of Cf34 Tcr In Complex With Hla-B8FLR
pdb|3FFC|J Chain J, Crystal Structure Of Cf34 Tcr In Complex With Hla-B8FLR
Length = 247
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + + RC
Sbjct: 154 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRC 213
Query: 81 KV 82
+V
Sbjct: 214 QV 215
>pdb|3TFK|D Chain D, 42f3-P4b10H2-Ld
pdb|3TPU|B Chain B, 42f3 P5e8H2-Ld Complex
pdb|3TPU|D Chain D, 42f3 P5e8H2-Ld Complex
pdb|3TPU|H Chain H, 42f3 P5e8H2-Ld Complex
pdb|3TPU|N Chain N, 42f3 P5e8H2-Ld Complex
Length = 243
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + + RC
Sbjct: 150 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRC 209
Query: 81 KV 82
+V
Sbjct: 210 QV 211
>pdb|3C60|B Chain B, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr Yae62
pdb|3C60|F Chain F, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr Yae62
pdb|3RGV|B Chain B, A Single Tcr Bound To Mhci And Mhc Ii Reveals Switchable
Tcr Conformers
Length = 236
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + + RC
Sbjct: 147 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRC 206
Query: 81 KV 82
+V
Sbjct: 207 QV 208
>pdb|3C5Z|B Chain B, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
COMPLEXED WITH Mouse Tcr B3k506
pdb|3C5Z|F Chain F, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
COMPLEXED WITH Mouse Tcr B3k506
Length = 240
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + + RC
Sbjct: 147 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRC 206
Query: 81 KV 82
+V
Sbjct: 207 QV 208
>pdb|3RDT|B Chain B, Crystal Structure Of 809.B5 Tcr Complexed With Mhc Class
Ii I-Ab3K Peptide
Length = 241
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + + RC
Sbjct: 148 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRC 207
Query: 81 KV 82
+V
Sbjct: 208 QV 209
>pdb|3HG1|E Chain E, Germline-Governed Recognition Of A Cancer Epitope By An
Immunodominant Human T Cell Receptor
Length = 244
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + RC
Sbjct: 151 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQDPRNHFRC 210
Query: 81 KV 82
+V
Sbjct: 211 QV 212
>pdb|2EYR|B Chain B, A Structural Basis For Selection And Cross-species
Reactivity Of The Semi-invariant Nkt Cell Receptor In
Cd1d/glycolipid Recognition
Length = 241
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + + RC
Sbjct: 148 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRC 207
Query: 81 KV 82
+V
Sbjct: 208 QV 209
>pdb|3SDX|F Chain F, Crystal Structure Of Human Autoreactive-Valpha24 Nkt Tcr
In Complex With Cd1d-Beta-Galactosylceramide
pdb|3SDX|H Chain H, Crystal Structure Of Human Autoreactive-Valpha24 Nkt Tcr
In Complex With Cd1d-Beta-Galactosylceramide
Length = 247
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + + RC
Sbjct: 154 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRC 213
Query: 81 KV 82
+V
Sbjct: 214 QV 215
>pdb|4EN3|B Chain B, Crystal Structure Of A Human Valpha24(-) Nkt Tcr In
Complex With Cd1dALPHA-Galactosylceramide
Length = 259
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + + RC
Sbjct: 156 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRC 215
Query: 81 KV 82
+V
Sbjct: 216 QV 217
>pdb|3SJV|E Chain E, Crystal Structure Of The Rl42 Tcr In Complex With
Hla-B8-Flr
pdb|3SJV|J Chain J, Crystal Structure Of The Rl42 Tcr In Complex With
Hla-B8-Flr
pdb|3SJV|O Chain O, Crystal Structure Of The Rl42 Tcr In Complex With
Hla-B8-Flr
pdb|3SJV|T Chain T, Crystal Structure Of The Rl42 Tcr In Complex With
Hla-B8-Flr
pdb|3SKN|B Chain B, Crystal Structure Of The Rl42 Tcr Unliganded
pdb|3SKN|D Chain D, Crystal Structure Of The Rl42 Tcr Unliganded
pdb|3SKN|F Chain F, Crystal Structure Of The Rl42 Tcr Unliganded
pdb|3SKN|H Chain H, Crystal Structure Of The Rl42 Tcr Unliganded
Length = 244
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + + RC
Sbjct: 151 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRC 210
Query: 81 KV 82
+V
Sbjct: 211 QV 212
>pdb|3TYF|B Chain B, Crystal Structure Of A Cd1d-Lysophosphatidylcholine
Reactive Inkt Tcr
pdb|3TYF|D Chain D, Crystal Structure Of A Cd1d-Lysophosphatidylcholine
Reactive Inkt Tcr
pdb|3TZV|B Chain B, Crystal Structure Of An Inkt Tcr In Complex With Cd1d-
Lysophosphatidylcholine
pdb|3TZV|H Chain H, Crystal Structure Of An Inkt Tcr In Complex With Cd1d-
Lysophosphatidylcholine
Length = 259
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + + RC
Sbjct: 156 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRC 215
Query: 81 KV 82
+V
Sbjct: 216 QV 217
>pdb|3UTT|E Chain E, 1e6-A0201-Alwgpdpaaa Complex, Triclinic
pdb|3UTT|J Chain J, 1e6-A0201-Alwgpdpaaa Complex, Triclinic
Length = 245
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + RC
Sbjct: 152 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQDPRNHFRC 211
Query: 81 KV 82
+V
Sbjct: 212 QV 213
>pdb|3QEQ|E Chain E, The Complex Between Tcr Dmf4 And Human Class I Mhc Hla-A2
With The Bound Mart-1(27-35) Nonameric Peptide
Length = 243
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + RC
Sbjct: 150 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQDPRNHFRC 209
Query: 81 KV 82
+V
Sbjct: 210 QV 211
>pdb|2AK4|E Chain E, Crystal Structure Of Sb27 Tcr In Complex With Hla-B3508-
13mer Peptide
pdb|2AK4|J Chain J, Crystal Structure Of Sb27 Tcr In Complex With Hla-B3508-
13mer Peptide
pdb|2AK4|P Chain P, Crystal Structure Of Sb27 Tcr In Complex With Hla-B3508-
13mer Peptide
pdb|2AK4|U Chain U, Crystal Structure Of Sb27 Tcr In Complex With Hla-B3508-
13mer Peptide
Length = 245
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + + RC
Sbjct: 152 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRC 211
Query: 81 KV 82
+V
Sbjct: 212 QV 213
>pdb|3QDG|E Chain E, The Complex Between Tcr Dmf5 And Human Class I Mhc Hla-A2
With The Bound Mart-1(26-35)(A27l) Peptide
pdb|3QDJ|E Chain E, The Complex Between Tcr Dmf5 And Human Class I Mhc Hla-A2
With The Bound Mart-1(27-35) Nonameric Peptide
Length = 242
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + RC
Sbjct: 149 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQDPRNHFRC 208
Query: 81 KV 82
+V
Sbjct: 209 QV 210
>pdb|3HE7|D Chain D, Crystal Structure Of Mouse Cd1d-Alpha-Galactosylceramide
With Mouse Valpha14-Vbeta7 Nkt Tcr
Length = 242
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + + RC
Sbjct: 149 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRC 208
Query: 81 KV 82
+V
Sbjct: 209 QV 210
>pdb|2P5E|E Chain E, Crystal Structures Of High Affinity Human T-Cell Receptors
Bound To Pmhc Reveal Native Diagonal Binding Geometry
Length = 242
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + RC
Sbjct: 148 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQDPRNHFRC 207
Query: 81 KV 82
+V
Sbjct: 208 QV 209
>pdb|3HE6|D Chain D, Crystal Structure Of Mouse Cd1d-Alpha-Galactosylceramide
With Mouse Valpha14-Vbeta8.2 Nkt Tcr
pdb|3ARB|D Chain D, Ternary Crystal Structure Of The Nkt
Tcr-Cd1d-Alpha-Galactosylceramide Analogue-Och
pdb|3ARD|D Chain D, Ternary Crystal Structure Of The Mouse Nkt
Tcr-Cd1d-3'deoxy-Alpha- Galactosylceramide
pdb|3ARE|D Chain D, Ternary Crystal Structure Of The Mouse Nkt
Tcr-Cd1d-4'deoxy-Alpha- Galactosylceramide
pdb|3ARF|D Chain D, Ternary Crystal Structure Of The Mouse Nkt Tcr-Cd1d-C20:2
pdb|3ARG|D Chain D, Ternary Crystal Structure Of The Mouse Nkt Tcr-Cd1d-Alpha-
Glucosylceramide(C20:2)
pdb|3TN0|D Chain D, Structure Of Mouse Va14vb8.2nkt Tcr-Mouse
Cd1d-A-C-Galactosylceramide Complex
Length = 244
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + + RC
Sbjct: 151 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRC 210
Query: 81 KV 82
+V
Sbjct: 211 QV 212
>pdb|3UTP|E Chain E, 1e6 Tcr Specific For Hla-A0201-Alwgpdpaaa
pdb|3UTP|L Chain L, 1e6 Tcr Specific For Hla-A0201-Alwgpdpaaa
pdb|3UTS|E Chain E, 1e6-A0201-Alwgpdpaaa Complex, Monoclinic
pdb|3UTS|J Chain J, 1e6-A0201-Alwgpdpaaa Complex, Monoclinic
Length = 246
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + RC
Sbjct: 153 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQDPRNHFRC 212
Query: 81 KV 82
+V
Sbjct: 213 QV 214
>pdb|2P5W|E Chain E, Crystal Structures Of High Affinity Human T-Cell Receptors
Bound To Pmhc Reveal Native Diagonal Binding Geometry
Length = 243
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + RC
Sbjct: 149 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQDPRNHFRC 208
Query: 81 KV 82
+V
Sbjct: 209 QV 210
>pdb|3PQY|E Chain E, Crystal Structure Of 6218 Tcr In Complex With The
H2db-Pa224
pdb|3PQY|J Chain J, Crystal Structure Of 6218 Tcr In Complex With The
H2db-Pa224
pdb|3PQY|O Chain O, Crystal Structure Of 6218 Tcr In Complex With The
H2db-Pa224
pdb|3PQY|T Chain T, Crystal Structure Of 6218 Tcr In Complex With The
H2db-Pa224
Length = 240
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + + RC
Sbjct: 147 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRC 206
Query: 81 KV 82
+V
Sbjct: 207 QV 208
>pdb|2CDF|B Chain B, Structure And Binding Kinetics Of Three Different Human
Cd1d-Alpha-Galactosylceramide-Specific T Cell Receptors
(Tcr 5e)
Length = 244
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + RC
Sbjct: 151 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQDPRNHFRC 210
Query: 81 KV 82
+V
Sbjct: 211 QV 212
>pdb|4EI5|D Chain D, Crystal Structure Of Xv19 Tcr In Complex With
Cd1d-Sulfatide C24:1
pdb|4EI5|H Chain H, Crystal Structure Of Xv19 Tcr In Complex With
Cd1d-Sulfatide C24:1
pdb|4EI6|B Chain B, Structure Of Xv19 Valpha1-Vbeta16 Type-Ii Natural Killer T
Cell Receptor
pdb|4EI6|D Chain D, Structure Of Xv19 Valpha1-Vbeta16 Type-Ii Natural Killer T
Cell Receptor
Length = 245
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + + RC
Sbjct: 152 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRC 211
Query: 81 KV 82
+V
Sbjct: 212 QV 213
>pdb|3QDM|E Chain E, The Complex Between Tcr Dmf4 And Human Class I Mhc Hla-A2
With The Bound Mart-1(26-35)(A27l) Decameric Peptide
Length = 242
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + RC
Sbjct: 149 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQDPRNHFRC 208
Query: 81 KV 82
+V
Sbjct: 209 QV 210
>pdb|2CDG|B Chain B, Structure And Binding Kinetics Of Three Different Human
Cd1d-Alpha-Galactosylceramide-Specific T Cell Receptors
(Tcr 5b)
Length = 244
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + RC
Sbjct: 151 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQDPRNHFRC 210
Query: 81 KV 82
+V
Sbjct: 211 QV 212
>pdb|3QH3|B Chain B, The Crystal Structure Of Tcr A6
pdb|3QH3|D Chain D, The Crystal Structure Of Tcr A6
Length = 245
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + RC
Sbjct: 152 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQDPRNHFRC 211
Query: 81 KV 82
+V
Sbjct: 212 QV 213
>pdb|3DX9|B Chain B, Crystal Structure Of The Dm1 Tcr At 2.75a
pdb|3DX9|D Chain D, Crystal Structure Of The Dm1 Tcr At 2.75a
pdb|3DXA|E Chain E, Crystal Structure Of The Dm1 Tcr In Complex With Hla-B4405
And Decamer Ebv Antigen
pdb|3DXA|J Chain J, Crystal Structure Of The Dm1 Tcr In Complex With Hla-B4405
And Decamer Ebv Antigen
pdb|3DXA|O Chain O, Crystal Structure Of The Dm1 Tcr In Complex With Hla-B4405
And Decamer Ebv Antigen
Length = 244
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + + RC
Sbjct: 151 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRC 210
Query: 81 KV 82
+V
Sbjct: 211 QV 212
>pdb|2PYF|B Chain B, Crystal Structures Of High Affinity Human T-Cell Receptors
Bound To Pmhc Revealnative Diagonal Binding Geometry
Unbound Tcr Clone 5-1
Length = 241
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + RC
Sbjct: 148 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQDPRNHFRC 207
Query: 81 KV 82
+V
Sbjct: 208 QV 209
>pdb|2ESV|E Chain E, Structure Of The Hla-E-VmaprtlilKK50.4 TCR COMPLEX
Length = 240
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + + RC
Sbjct: 147 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRC 206
Query: 81 KV 82
+V
Sbjct: 207 QV 208
>pdb|4DZB|B Chain B, Mucosal-Associated Invariant T Cell Receptor,
Valpha7.2jalpha33-Vbeta2
Length = 246
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + + RC
Sbjct: 153 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRC 212
Query: 81 KV 82
+V
Sbjct: 213 QV 214
>pdb|3QEU|B Chain B, The Crystal Structure Of Tcr Dmf5
pdb|3QEU|E Chain E, The Crystal Structure Of Tcr Dmf5
Length = 243
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + RC
Sbjct: 150 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQDPRNHFRC 209
Query: 81 KV 82
+V
Sbjct: 210 QV 211
>pdb|3QJF|B Chain B, Crystal Structure Of The 2b4 Tcr
pdb|3QJF|D Chain D, Crystal Structure Of The 2b4 Tcr
Length = 244
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + + RC
Sbjct: 151 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRC 210
Query: 81 KV 82
+V
Sbjct: 211 QV 212
>pdb|3QIB|D Chain D, Crystal Structure Of The 2b4 Tcr In Complex With MccI-Ek
Length = 270
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + + RC
Sbjct: 177 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRC 236
Query: 81 KV 82
+V
Sbjct: 237 QV 238
>pdb|2PYE|E Chain E, Crystal Structures Of High Affinity Human T-Cell Receptors
Bound To Pmhc Revealnative Diagonal Binding Geometry Tcr
Clone C5c1 Complexed With Mhc
Length = 242
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + RC
Sbjct: 149 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQDPRNHFRC 208
Query: 81 KV 82
+V
Sbjct: 209 QV 210
>pdb|2F53|E Chain E, Directed Evolution Of Human T-Cell Receptor Cdr2 Residues
By Phage Display Dramatically Enhances Affinity For
Cognate Peptide-Mhc Without Apparent Cross-Reactivity
Length = 243
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + RC
Sbjct: 150 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQDPRNHFRC 209
Query: 81 KV 82
+V
Sbjct: 210 QV 211
>pdb|2BNU|B Chain B, Structural And Kinetic Basis For Heightened Immunogenicity
Of T Cell Vaccines
pdb|2BNQ|E Chain E, Structural And Kinetic Basis For Heightened Immunogenicity
Of T Cell Vaccines
pdb|2BNR|E Chain E, Structural And Kinetic Basis For Heightened Immunogenicity
Of T Cell Vaccines
pdb|2F54|E Chain E, Directed Evolution Of Human T Cell Receptor Cdr2 Residues
By Phage Display Dramatically Enhances Affinity For
Cognate Peptide-Mhc Without Increasing Apparent
Cross-Reactivity
pdb|2F54|L Chain L, Directed Evolution Of Human T Cell Receptor Cdr2 Residues
By Phage Display Dramatically Enhances Affinity For
Cognate Peptide-Mhc Without Increasing Apparent
Cross-Reactivity
Length = 241
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + RC
Sbjct: 148 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQDPRNHFRC 207
Query: 81 KV 82
+V
Sbjct: 208 QV 209
>pdb|3KXF|E Chain E, Crystal Structure Of Sb27 Tcr In Complex With The
'restriction Triad' Mutant Hla-B3508-13mer
pdb|3KXF|H Chain H, Crystal Structure Of Sb27 Tcr In Complex With The
'restriction Triad' Mutant Hla-B3508-13mer
pdb|3KXF|P Chain P, Crystal Structure Of Sb27 Tcr In Complex With The
'restriction Triad' Mutant Hla-B3508-13mer
pdb|3KXF|O Chain O, Crystal Structure Of Sb27 Tcr In Complex With The
'restriction Triad' Mutant Hla-B3508-13mer
Length = 241
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + + RC
Sbjct: 148 YPDHVELSWWVNGKEVHSGVCTDPEPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRC 207
Query: 81 KV 82
+V
Sbjct: 208 QV 209
>pdb|3QIU|D Chain D, Crystal Structure Of The 226 Tcr In Complex With MccI-Ek
pdb|3QIW|D Chain D, Crystal Structure Of The 226 Tcr In Complex With
Mcc-P5eI-Ek
pdb|3QJH|B Chain B, The Crystal Structure Of The 5c.C7 Tcr
pdb|3QJH|D Chain D, The Crystal Structure Of The 5c.C7 Tcr
Length = 243
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + + RC
Sbjct: 150 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRC 209
Query: 81 KV 82
+V
Sbjct: 210 QV 211
>pdb|2NW2|B Chain B, Crystal Structure Of Els4 Tcr At 1.4a
pdb|2NX5|E Chain E, Crystal Structure Of Els4 Tcr Bound To Hla-B3501
Presenting Peptide Eplpqgqltay At 1.7a
pdb|2NX5|J Chain J, Crystal Structure Of Els4 Tcr Bound To Hla-B3501
Presenting Peptide Eplpqgqltay At 1.7a
pdb|2NX5|P Chain P, Crystal Structure Of Els4 Tcr Bound To Hla-B3501
Presenting Peptide Eplpqgqltay At 1.7a
pdb|2NX5|U Chain U, Crystal Structure Of Els4 Tcr Bound To Hla-B3501
Presenting Peptide Eplpqgqltay At 1.7a
Length = 243
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 23 PDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRCK 81
PD V G E G+C D +KE P LN + +A +LR + + RC+
Sbjct: 151 PDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQ 210
Query: 82 V 82
V
Sbjct: 211 V 211
>pdb|3O4L|E Chain E, Genetic And Structural Basis For Selection Of A Ubiquitous
T Cell Receptor Deployed In Epstein-Barr Virus
Length = 245
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + RC
Sbjct: 152 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQDPRNHFRC 211
Query: 81 KV 82
+V
Sbjct: 212 QV 213
>pdb|3SCM|D Chain D, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Isoglobotrihexosylceramide
pdb|3SDA|D Chain D, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Beta-Galactosylceramide
pdb|3SDC|D Chain D, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Globotrihexosylceramide
pdb|3SDD|D Chain D, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Beta-Lactosylceramide
Length = 245
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + + RC
Sbjct: 152 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRC 211
Query: 81 KV 82
+V
Sbjct: 212 QV 213
>pdb|3QI9|D Chain D, Crystal Structure Of Mouse Cd1d-Alpha-Phosphotidylinositol
With Mouse Valpha14-Vbeta6 2a3-D Nkt Tcr
Length = 243
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRC 80
+PD V G E G+C D +KE P LN + +A +LR + + RC
Sbjct: 150 YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRC 209
Query: 81 KV 82
+V
Sbjct: 210 QV 211
>pdb|2IAL|B Chain B, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAL|D Chain D, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAM|D Chain D, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|E Chain E, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|J Chain J, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|O Chain O, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
pdb|2IAN|T Chain T, Structural Basis For Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted Tcr
Length = 240
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 23 PDVVYEELSSKGTEKIEGICLDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRCK 81
PD V G E G+C D +KE P LN + +A +LR + + RC+
Sbjct: 148 PDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQ 207
Query: 82 V 82
V
Sbjct: 208 V 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,809,632
Number of Sequences: 62578
Number of extensions: 198839
Number of successful extensions: 531
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 526
Number of HSP's gapped (non-prelim): 61
length of query: 251
length of database: 14,973,337
effective HSP length: 96
effective length of query: 155
effective length of database: 8,965,849
effective search space: 1389706595
effective search space used: 1389706595
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)