Query 025516
Match_columns 251
No_of_seqs 134 out of 1831
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 06:39:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025516.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025516hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.9 8.7E-22 1.9E-26 187.4 19.0 243 2-244 486-821 (1153)
2 PLN00113 leucine-rich repeat r 99.9 1.2E-21 2.6E-26 184.8 13.2 205 36-247 69-306 (968)
3 PLN00113 leucine-rich repeat r 99.9 1.7E-21 3.7E-26 183.8 13.2 190 54-247 156-354 (968)
4 KOG4194 Membrane glycoprotein 99.8 5.4E-20 1.2E-24 156.0 2.3 194 52-248 211-439 (873)
5 KOG0444 Cytoskeletal regulator 99.8 2.6E-20 5.6E-25 159.4 -1.9 223 22-248 64-338 (1255)
6 KOG4194 Membrane glycoprotein 99.7 4.5E-19 9.7E-24 150.6 0.1 193 38-235 175-375 (873)
7 KOG0444 Cytoskeletal regulator 99.6 3.2E-18 6.9E-23 146.8 -4.4 201 39-246 129-359 (1255)
8 PLN03210 Resistant to P. syrin 99.6 8.8E-15 1.9E-19 139.9 15.1 109 133-241 779-909 (1153)
9 KOG0617 Ras suppressor protein 99.6 9.8E-18 2.1E-22 122.3 -3.9 135 112-249 55-196 (264)
10 KOG0472 Leucine-rich repeat pr 99.6 1.5E-17 3.3E-22 135.7 -3.8 108 133-245 436-546 (565)
11 PRK15387 E3 ubiquitin-protein 99.6 8.9E-15 1.9E-19 132.2 12.9 86 157-248 383-468 (788)
12 KOG0617 Ras suppressor protein 99.6 1.5E-16 3.2E-21 116.2 -2.1 141 105-249 25-173 (264)
13 KOG0472 Leucine-rich repeat pr 99.6 4E-17 8.6E-22 133.3 -5.9 189 55-248 84-297 (565)
14 PRK15370 E3 ubiquitin-protein 99.5 1.6E-13 3.5E-18 124.5 12.1 139 95-244 245-385 (754)
15 PRK15370 E3 ubiquitin-protein 99.5 1.1E-13 2.4E-18 125.6 8.7 190 37-245 200-407 (754)
16 KOG0618 Serine/threonine phosp 99.4 9.2E-15 2E-19 130.2 -1.0 120 115-237 361-488 (1081)
17 cd00116 LRR_RI Leucine-rich re 99.4 1.7E-14 3.7E-19 119.8 -0.4 207 34-240 49-293 (319)
18 KOG4237 Extracellular matrix p 99.4 2.3E-14 5.1E-19 116.9 -2.6 194 38-238 69-359 (498)
19 PRK15387 E3 ubiquitin-protein 99.4 1.8E-12 3.9E-17 117.4 9.2 83 133-221 383-465 (788)
20 cd00116 LRR_RI Leucine-rich re 99.3 2.9E-13 6.2E-18 112.5 0.2 201 34-236 79-318 (319)
21 PF14580 LRR_9: Leucine-rich r 99.3 2.1E-12 4.5E-17 97.0 4.8 130 102-233 8-148 (175)
22 KOG0618 Serine/threonine phosp 99.2 9.5E-13 2.1E-17 117.6 -0.3 198 30-235 304-510 (1081)
23 KOG3207 Beta-tubulin folding c 99.2 5.5E-12 1.2E-16 104.4 2.2 212 24-239 109-340 (505)
24 PLN03150 hypothetical protein; 99.2 1.1E-10 2.3E-15 105.3 8.6 109 134-242 420-532 (623)
25 KOG4658 Apoptotic ATPase [Sign 99.1 2.7E-11 5.9E-16 111.8 3.5 158 2-167 479-653 (889)
26 KOG0532 Leucine-rich repeat (L 99.1 1.4E-12 3.1E-17 111.1 -4.6 172 56-235 92-270 (722)
27 KOG0532 Leucine-rich repeat (L 99.1 1.7E-12 3.6E-17 110.7 -4.3 192 43-245 57-253 (722)
28 KOG4237 Extracellular matrix p 99.1 2.5E-11 5.4E-16 99.5 0.9 178 52-235 264-498 (498)
29 COG4886 Leucine-rich repeat (L 99.1 2.7E-10 5.8E-15 97.6 6.4 181 56-244 110-296 (394)
30 PF14580 LRR_9: Leucine-rich r 99.1 2.8E-10 6E-15 85.6 5.5 118 120-239 4-127 (175)
31 PLN03150 hypothetical protein; 99.0 1.2E-09 2.6E-14 98.5 7.4 92 157-248 419-513 (623)
32 PF13855 LRR_8: Leucine rich r 98.9 7.1E-10 1.5E-14 68.8 3.4 60 178-237 1-61 (61)
33 KOG1259 Nischarin, modulator o 98.9 3.5E-10 7.7E-15 90.0 -0.4 124 113-239 284-413 (490)
34 COG4886 Leucine-rich repeat (L 98.8 3.7E-09 8E-14 90.6 4.8 173 36-219 116-295 (394)
35 KOG3207 Beta-tubulin folding c 98.8 4.7E-10 1E-14 93.2 -1.3 174 59-237 118-313 (505)
36 KOG1259 Nischarin, modulator o 98.8 5.3E-09 1.1E-13 83.5 3.6 106 129-237 281-386 (490)
37 PF13855 LRR_8: Leucine rich r 98.6 8.1E-08 1.8E-12 59.5 3.7 28 185-212 32-60 (61)
38 PRK15386 type III secretion pr 98.5 4E-07 8.6E-12 76.9 8.5 56 93-150 54-112 (426)
39 KOG1909 Ran GTPase-activating 98.5 8.2E-09 1.8E-13 83.6 -1.8 182 56-237 86-310 (382)
40 KOG1909 Ran GTPase-activating 98.5 1.1E-08 2.3E-13 83.0 -2.3 158 56-213 114-310 (382)
41 KOG4658 Apoptotic ATPase [Sign 98.4 3.3E-07 7.1E-12 85.2 4.7 130 106-235 516-652 (889)
42 KOG0531 Protein phosphatase 1, 98.3 9.2E-08 2E-12 82.5 -0.1 105 58-169 91-199 (414)
43 PF12799 LRR_4: Leucine Rich r 98.3 8.2E-07 1.8E-11 50.8 3.1 36 179-214 2-37 (44)
44 KOG4579 Leucine-rich repeat (L 98.3 4.1E-08 8.8E-13 69.6 -2.8 107 134-244 29-141 (177)
45 KOG0531 Protein phosphatase 1, 98.3 2.1E-07 4.6E-12 80.3 0.6 101 111-213 93-198 (414)
46 KOG1859 Leucine-rich repeat pr 98.2 2.8E-08 6.1E-13 87.8 -5.7 120 114-237 165-291 (1096)
47 PRK15386 type III secretion pr 98.2 3.7E-06 8E-11 71.1 6.5 115 112-235 51-187 (426)
48 KOG1859 Leucine-rich repeat pr 98.1 3.3E-08 7.2E-13 87.3 -7.9 100 112-213 186-291 (1096)
49 KOG2120 SCF ubiquitin ligase, 98.1 6.8E-08 1.5E-12 77.1 -5.6 169 62-235 185-373 (419)
50 KOG2120 SCF ubiquitin ligase, 98.1 1.4E-07 3E-12 75.3 -4.3 131 112-244 209-355 (419)
51 KOG2982 Uncharacterized conser 98.0 2.1E-06 4.5E-11 68.8 1.8 169 60-231 69-285 (418)
52 KOG1644 U2-associated snRNP A' 97.9 2.4E-05 5.3E-10 59.3 5.8 98 112-210 41-149 (233)
53 PF12799 LRR_4: Leucine Rich r 97.9 1.6E-05 3.6E-10 45.4 3.3 37 201-238 1-37 (44)
54 KOG4579 Leucine-rich repeat (L 97.8 1.2E-06 2.6E-11 62.3 -3.0 118 128-248 49-169 (177)
55 KOG1644 U2-associated snRNP A' 97.7 0.00013 2.9E-09 55.4 5.9 78 111-188 62-150 (233)
56 KOG3665 ZYG-1-like serine/thre 97.6 7.7E-06 1.7E-10 74.4 -1.6 81 111-191 171-263 (699)
57 KOG2123 Uncharacterized conser 97.5 4.7E-06 1E-10 66.2 -3.8 99 132-232 19-124 (388)
58 KOG3665 ZYG-1-like serine/thre 97.4 5.4E-05 1.2E-09 69.0 1.1 127 113-239 122-264 (699)
59 COG5238 RNA1 Ran GTPase-activa 97.3 0.00017 3.7E-09 57.4 2.7 102 23-125 17-132 (388)
60 KOG2739 Leucine-rich acidic nu 96.9 0.00075 1.6E-08 53.3 3.1 102 131-234 42-152 (260)
61 KOG2739 Leucine-rich acidic nu 96.9 0.00061 1.3E-08 53.7 2.5 96 113-208 43-150 (260)
62 COG5238 RNA1 Ran GTPase-activa 96.8 0.00016 3.5E-09 57.5 -1.8 181 55-236 85-314 (388)
63 PF00560 LRR_1: Leucine Rich R 96.6 0.00075 1.6E-08 32.2 0.6 18 180-197 2-19 (22)
64 KOG2982 Uncharacterized conser 96.6 0.00051 1.1E-08 55.4 -0.3 177 62-241 45-265 (418)
65 PF00560 LRR_1: Leucine Rich R 96.1 0.0016 3.4E-08 31.1 0.1 18 203-221 2-19 (22)
66 PF13504 LRR_7: Leucine rich r 95.7 0.0071 1.5E-07 26.8 1.3 15 179-193 2-16 (17)
67 KOG2123 Uncharacterized conser 94.7 0.0017 3.6E-08 52.1 -3.9 87 155-243 18-106 (388)
68 KOG1947 Leucine rich repeat pr 93.9 0.02 4.2E-07 50.2 0.6 108 131-238 187-308 (482)
69 smart00370 LRR Leucine-rich re 93.3 0.074 1.6E-06 26.2 1.9 19 178-196 2-20 (26)
70 smart00369 LRR_TYP Leucine-ric 93.3 0.074 1.6E-06 26.2 1.9 19 178-196 2-20 (26)
71 PF13306 LRR_5: Leucine rich r 92.9 0.63 1.4E-05 32.7 7.0 53 179-234 59-112 (129)
72 PF13306 LRR_5: Leucine rich r 92.2 0.74 1.6E-05 32.3 6.6 93 129-227 32-128 (129)
73 KOG4341 F-box protein containi 92.1 0.052 1.1E-06 46.1 0.5 108 132-239 320-440 (483)
74 KOG1947 Leucine rich repeat pr 90.8 0.086 1.9E-06 46.2 0.5 106 129-234 211-330 (482)
75 KOG3864 Uncharacterized conser 90.5 0.026 5.6E-07 43.2 -2.5 59 113-171 101-166 (221)
76 KOG4308 LRR-containing protein 90.4 0.001 2.2E-08 58.3 -11.7 111 129-239 169-304 (478)
77 PF13516 LRR_6: Leucine Rich r 90.3 0.037 8.1E-07 26.7 -1.3 14 201-214 2-15 (24)
78 smart00364 LRR_BAC Leucine-ric 90.1 0.22 4.7E-06 24.7 1.4 18 178-195 2-19 (26)
79 KOG0473 Leucine-rich repeat pr 89.6 0.011 2.4E-07 46.3 -5.2 85 127-213 37-123 (326)
80 KOG3864 Uncharacterized conser 89.0 0.091 2E-06 40.3 -0.6 81 133-213 102-188 (221)
81 KOG4341 F-box protein containi 88.6 0.17 3.7E-06 43.1 0.7 109 131-239 293-415 (483)
82 smart00365 LRR_SD22 Leucine-ri 86.8 0.56 1.2E-05 23.2 1.6 18 113-130 2-19 (26)
83 KOG4308 LRR-containing protein 86.5 0.004 8.6E-08 54.6 -10.6 161 88-248 89-285 (478)
84 KOG0473 Leucine-rich repeat pr 81.2 0.03 6.5E-07 44.0 -6.5 83 154-237 40-123 (326)
85 smart00367 LRR_CC Leucine-rich 79.2 1.7 3.6E-05 21.2 1.6 16 224-239 1-16 (26)
86 smart00368 LRR_RI Leucine rich 69.8 4 8.7E-05 20.3 1.6 13 179-191 3-15 (28)
87 KOG3763 mRNA export factor TAP 68.6 2.8 6.1E-05 37.2 1.4 14 113-126 218-231 (585)
88 KOG3763 mRNA export factor TAP 51.7 7.7 0.00017 34.6 1.2 63 154-217 216-286 (585)
89 PF07725 LRR_3: Leucine Rich R 47.5 18 0.0004 16.6 1.6 18 114-131 1-18 (20)
90 KOG4242 Predicted myosin-I-bin 36.1 71 0.0015 28.4 4.5 23 62-84 165-187 (553)
91 TIGR00864 PCC polycystin catio 29.1 35 0.00076 36.8 1.9 15 177-191 18-32 (2740)
92 PF05725 FNIP: FNIP Repeat; I 28.2 1.1E+02 0.0024 16.8 3.3 7 157-163 13-19 (44)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=8.7e-22 Score=187.37 Aligned_cols=243 Identities=34% Similarity=0.540 Sum_probs=157.6
Q ss_pred CchhHhHHHHHHHHhhh------------hcCCcchHHHHHhccCCCceEEEEeecCCcccccCCchhhhcCCCccEEEe
Q 025516 2 EALEYHDALELFSRHAF------------KQNHPDVVYEELSSKGTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKF 69 (251)
Q Consensus 2 ~~~~~hd~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l 69 (251)
+.+.|||++++||++++ .|+..++..+.....+..+++++.++.+......+.+.+|.+|++|+.|.+
T Consensus 486 ~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~ 565 (1153)
T PLN03210 486 DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKF 565 (1153)
T ss_pred CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEE
Confidence 35899999999999997 244556777788888999999999999998888888999999999999999
Q ss_pred ecccCCCCCccccccCCccee--cceeEEeeccCCCCCCCCCCCcCCceEeecCCCccc---------------------
Q 025516 70 YSSSFNGENRCKVSHLQDLRF--AEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIE--------------------- 126 (251)
Q Consensus 70 ~~n~~~~~~~~~l~~l~~l~~--l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~--------------------- 126 (251)
..+.+.......+..+..+.. ..|+.+.+.++.+..+|..+.+.+|+.|+++++++.
T Consensus 566 ~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~ 645 (1153)
T PLN03210 566 YTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSK 645 (1153)
T ss_pred ecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCC
Confidence 766432211111111122221 135555555555555555444445555555444443
Q ss_pred ------cccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc-cCCccEEE---------------
Q 025516 127 ------QLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-SGNIGQLF--------------- 184 (251)
Q Consensus 127 ------~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~L~--------------- 184 (251)
.+..+++|+.|++++|.....+|..++.+++|+.|++++|..++.+|... +++|+.|+
T Consensus 646 ~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~ 725 (1153)
T PLN03210 646 NLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDIST 725 (1153)
T ss_pred CcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccC
Confidence 23334467777777766666677777777777777777776666655432 34444444
Q ss_pred ------ccccCCccCCccc------------------------------ccCccCCEEeccCCcCCccCcccccCCCCCC
Q 025516 185 ------LSGTAIEELPSSF------------------------------ELLLRLWLLDLSDCKRLKSLPSSLCKLKSLE 228 (251)
Q Consensus 185 ------l~~n~i~~lp~~~------------------------------~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 228 (251)
+++|.+..+|..+ ..+++|+.|++++|+....+|..++++++|+
T Consensus 726 nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~ 805 (1153)
T PLN03210 726 NISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLE 805 (1153)
T ss_pred CcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCC
Confidence 4444444444321 0124566777777776777787788888888
Q ss_pred EEeccCCcCCCCCChh
Q 025516 229 LLSLRGCSNLQRLPDR 244 (251)
Q Consensus 229 ~L~l~~n~~~~~~p~~ 244 (251)
.|++++|..++.+|..
T Consensus 806 ~L~Ls~C~~L~~LP~~ 821 (1153)
T PLN03210 806 HLEIENCINLETLPTG 821 (1153)
T ss_pred EEECCCCCCcCeeCCC
Confidence 8888888777777764
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=1.2e-21 Score=184.81 Aligned_cols=205 Identities=20% Similarity=0.263 Sum_probs=110.8
Q ss_pred CceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCcccc-ccCCcceecceeEEeeccCCCCCCCCCCCcCC
Q 025516 36 EKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKV-SHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEK 114 (251)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~ 114 (251)
.++..+.+..+.+. ...+..|..+++|+.|++++|.+.+..+..+ ..+.+|+.++++.|++.+ .+|. ..+.+
T Consensus 69 ~~v~~L~L~~~~i~--~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~----~~p~-~~l~~ 141 (968)
T PLN00113 69 SRVVSIDLSGKNIS--GKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG----SIPR-GSIPN 141 (968)
T ss_pred CcEEEEEecCCCcc--ccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcccc----ccCc-cccCC
Confidence 34555555544433 3347788999999999999999887666553 366777777666665543 2221 12444
Q ss_pred ceEeecCCCccc-----cccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCC----------------------
Q 025516 115 LMFLEVPNSDIE-----QLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCS---------------------- 167 (251)
Q Consensus 115 L~~L~l~~n~i~-----~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~---------------------- 167 (251)
|++|++++|.+. .+..+++|++|++++|.+.+.+|..++++++|++|++++|.
T Consensus 142 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 221 (968)
T PLN00113 142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY 221 (968)
T ss_pred CCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcC
Confidence 555555555443 13334445555555544444444444444455555554444
Q ss_pred --CCCCCCccc--cCCccEEEccccCCc-cCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCC
Q 025516 168 --KLKRLPEIS--SGNIGQLFLSGTAIE-ELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLP 242 (251)
Q Consensus 168 --~~~~~~~~~--~~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p 242 (251)
+.+.+|... +++|++|++++|.++ .+|..++++++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|
T Consensus 222 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 301 (968)
T PLN00113 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301 (968)
T ss_pred CccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCC
Confidence 444444322 445555555555544 344445555555555555555555555555555555555555555555555
Q ss_pred hhhhh
Q 025516 243 DRLAS 247 (251)
Q Consensus 243 ~~l~~ 247 (251)
..+++
T Consensus 302 ~~~~~ 306 (968)
T PLN00113 302 ELVIQ 306 (968)
T ss_pred hhHcC
Confidence 54443
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=1.7e-21 Score=183.80 Aligned_cols=190 Identities=20% Similarity=0.251 Sum_probs=114.9
Q ss_pred CchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCC-CcCCceEeecCCCccc-----c
Q 025516 54 NPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH-SAEKLMFLEVPNSDIE-----Q 127 (251)
Q Consensus 54 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l~~L~~L~l~~n~i~-----~ 127 (251)
.|..++.+++|++|++++|.+.+..+..+..+.+|+.++++.|.+.+ .+|..+ .+.+|++|++++|++. .
T Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 231 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVG----QIPRELGQMKSLKWIYLGYNNLSGEIPYE 231 (968)
T ss_pred CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcC----cCChHHcCcCCccEEECcCCccCCcCChh
Confidence 36667777888888888777777666677777777766666665544 334333 4666666666666653 2
Q ss_pred ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCc-cCCcccccCccCC
Q 025516 128 LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIE-ELPSSFELLLRLW 204 (251)
Q Consensus 128 l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~-~lp~~~~~l~~L~ 204 (251)
+..+++|++|++++|.+.+..|..++++++|++|++++|.+.+.+|... +++|+.|++++|.+. .+|..+.++++|+
T Consensus 232 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 311 (968)
T PLN00113 232 IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLE 311 (968)
T ss_pred HhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCc
Confidence 3455666666666666555666666666666666666666555554432 455666666666555 4455555555556
Q ss_pred EEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhh
Q 025516 205 LLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLAS 247 (251)
Q Consensus 205 ~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~ 247 (251)
.|++++|.+.+..|..++.+++|+.|++++|.+.+.+|..++.
T Consensus 312 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 354 (968)
T PLN00113 312 ILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK 354 (968)
T ss_pred EEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC
Confidence 6655555555555555555555555555555555555554443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.78 E-value=5.4e-20 Score=156.03 Aligned_cols=194 Identities=18% Similarity=0.122 Sum_probs=119.2
Q ss_pred cCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCccc-----
Q 025516 52 PLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIE----- 126 (251)
Q Consensus 52 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~----- 126 (251)
.+++.+|.++++|+.|++..|.+..+..-+|..+.+++.+.|..|+++...-+ ..+++.++++|++..|++.
T Consensus 211 tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG---~Fy~l~kme~l~L~~N~l~~vn~g 287 (873)
T KOG4194|consen 211 TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDG---AFYGLEKMEHLNLETNRLQAVNEG 287 (873)
T ss_pred ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCc---ceeeecccceeecccchhhhhhcc
Confidence 33466666677777777777766666556666666666555555554432111 1124566666666666664
Q ss_pred cccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCcc------------------------c--cCCc
Q 025516 127 QLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEI------------------------S--SGNI 180 (251)
Q Consensus 127 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~------------------------~--~~~L 180 (251)
++.+++.|+.|++++|.+....++++...++|++|++++|++..--++. + +++|
T Consensus 288 ~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL 367 (873)
T KOG4194|consen 288 WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSL 367 (873)
T ss_pred cccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhh
Confidence 2344555666666666555555555555556666666665433221111 1 5567
Q ss_pred cEEEccccCCcc-CC---cccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhc
Q 025516 181 GQLFLSGTAIEE-LP---SSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASY 248 (251)
Q Consensus 181 ~~L~l~~n~i~~-lp---~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l 248 (251)
++|+|+.|.++. +. ..+.+++.|+.|++-+|++....-.+|.++++|+.|++.+|.+...-|..+.++
T Consensus 368 ~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 368 HKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred hhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence 777777777662 22 235678888888888888544434688889999999999988888888777655
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.76 E-value=2.6e-20 Score=159.43 Aligned_cols=223 Identities=20% Similarity=0.300 Sum_probs=127.6
Q ss_pred CcchHHHHHhccCCCceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEe----
Q 025516 22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLH---- 97 (251)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~---- 97 (251)
++....+..+....+.++++.+..+++...+++++.| .+..|+.|++|.|.+... |..+..-+++-+++|++|+
T Consensus 64 HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~Ev-P~~LE~AKn~iVLNLS~N~IetI 141 (1255)
T KOG0444|consen 64 HNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREV-PTNLEYAKNSIVLNLSYNNIETI 141 (1255)
T ss_pred hhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhc-chhhhhhcCcEEEEcccCccccC
Confidence 4455556666667777777777777777777766554 678888888888876642 2223333333344444333
Q ss_pred ---------------eccCCCCCCCCCC-CcCCceEeecCCCccc-----cccCcCCccEEEcCCCcCC-ccccCccccC
Q 025516 98 ---------------WHGYPLKSLPSNH-SAEKLMFLEVPNSDIE-----QLWNSVKLVILNLSGSKSL-KSLPAGIFNL 155 (251)
Q Consensus 98 ---------------l~~~~~~~~~~~~-~l~~L~~L~l~~n~i~-----~l~~~~~L~~L~l~~n~~~-~~~~~~~~~l 155 (251)
++++.+..+|... .+.+|++|++++|.+. .+|.+++|++|.+++.+.+ ..+|.++..+
T Consensus 142 Pn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l 221 (1255)
T KOG0444|consen 142 PNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDL 221 (1255)
T ss_pred CchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhh
Confidence 2333344444444 3556666666666542 4566666666666654322 2345555555
Q ss_pred CCccEEecCCCCCCCCCCcc-------------------------ccCCccEEEccccCCccCCcccccCccCCEEeccC
Q 025516 156 EFLTELDLSGCSKLKRLPEI-------------------------SSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSD 210 (251)
Q Consensus 156 ~~L~~L~l~~n~~~~~~~~~-------------------------~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~ 210 (251)
.+|+.+|++.|.+ ..+|+. ...+|++|++++|+++.+|+.+++++.|+.|.+.+
T Consensus 222 ~NL~dvDlS~N~L-p~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~ 300 (1255)
T KOG0444|consen 222 HNLRDVDLSENNL-PIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANN 300 (1255)
T ss_pred hhhhhccccccCC-CcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhcc
Confidence 5555555555432 222221 13456666666666666666667777777776666
Q ss_pred CcCC-ccCcccccCCCCCCEEeccCCcCCCCCChhhhhc
Q 025516 211 CKRL-KSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASY 248 (251)
Q Consensus 211 n~~~-~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l 248 (251)
|++. ..+|.+++++.+|+.+...+ +.++-+|++++.+
T Consensus 301 NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC 338 (1255)
T KOG0444|consen 301 NKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRC 338 (1255)
T ss_pred CcccccCCccchhhhhhhHHHHhhc-cccccCchhhhhh
Confidence 6654 34566666666666666655 4555666666554
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.73 E-value=4.5e-19 Score=150.56 Aligned_cols=193 Identities=21% Similarity=0.211 Sum_probs=127.8
Q ss_pred eEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceE
Q 025516 38 IEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMF 117 (251)
Q Consensus 38 ~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~ 117 (251)
+..+.+..+.+++++ ...|.++.+|..|.++.|+++...+..|..++.|+.++|..|.+.-.....|. ++.+|+.
T Consensus 175 i~~L~La~N~It~l~--~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFq---gL~Sl~n 249 (873)
T KOG4194|consen 175 IKKLNLASNRITTLE--TGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQ---GLPSLQN 249 (873)
T ss_pred ceEEeeccccccccc--cccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhc---Cchhhhh
Confidence 444444444444433 55677777777777777777666556666677777777766666543211111 5777777
Q ss_pred eecCCCcccc-----ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCcc--ccCCccEEEccccCC
Q 025516 118 LEVPNSDIEQ-----LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEI--SSGNIGQLFLSGTAI 190 (251)
Q Consensus 118 L~l~~n~i~~-----l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~~L~~L~l~~n~i 190 (251)
+.+..|.|.. +..+.++++|+|..|++...-..++.+++.|+.|+++.|.+...-++. +.++|++|+|+.|.|
T Consensus 250 lklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i 329 (873)
T KOG4194|consen 250 LKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRI 329 (873)
T ss_pred hhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccc
Confidence 7777777763 445669999999999977777788999999999999999877655543 388999999999999
Q ss_pred ccCCc-ccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCC
Q 025516 191 EELPS-SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGC 235 (251)
Q Consensus 191 ~~lp~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n 235 (251)
+++++ .+..+..|+.|.|++|.+....-.+|..+.+|++|++++|
T Consensus 330 ~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N 375 (873)
T KOG4194|consen 330 TRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSN 375 (873)
T ss_pred ccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCC
Confidence 98875 3455555555555555543333333444444444444444
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.65 E-value=3.2e-18 Score=146.81 Aligned_cols=201 Identities=21% Similarity=0.327 Sum_probs=133.7
Q ss_pred EEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCC-------------
Q 025516 39 EGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKS------------- 105 (251)
Q Consensus 39 ~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~------------- 105 (251)
-.+.++.++++++ +...|-+++.|-+|++|+|++.. .|+.+..+..|+.+.|+.|.+...++..
T Consensus 129 iVLNLS~N~IetI--Pn~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms 205 (1255)
T KOG0444|consen 129 IVLNLSYNNIETI--PNSLFINLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMS 205 (1255)
T ss_pred EEEEcccCccccC--CchHHHhhHhHhhhccccchhhh-cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcc
Confidence 3334444444433 34566677777777777776553 3444455555555666666554444333
Q ss_pred --------CCCCC-CcCCceEeecCCCcccccc----CcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCC
Q 025516 106 --------LPSNH-SAEKLMFLEVPNSDIEQLW----NSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRL 172 (251)
Q Consensus 106 --------~~~~~-~l~~L~~L~l~~n~i~~l~----~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 172 (251)
+|..+ .+.+|..++++.|.++.+| .+.+|+.|+|++|+ ...+.-..+.+.+|++|+++.|+ ++.+
T Consensus 206 ~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQ-Lt~L 283 (1255)
T KOG0444|consen 206 NTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQ-LTVL 283 (1255)
T ss_pred cccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhhccccch-hccc
Confidence 34333 3566777777777776444 45678888888876 44444445567778888888886 4556
Q ss_pred Cccc--cCCccEEEccccCCc--cCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhh
Q 025516 173 PEIS--SGNIGQLFLSGTAIE--ELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLA 246 (251)
Q Consensus 173 ~~~~--~~~L~~L~l~~n~i~--~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~ 246 (251)
|... ++.|+.|.+..|+++ .+|+.++++.+|+++..++|. +...|++++.|..|++|.++.|.++ .+|++|-
T Consensus 284 P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LElVPEglcRC~kL~kL~L~~NrLi-TLPeaIH 359 (1255)
T KOG0444|consen 284 PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIH 359 (1255)
T ss_pred hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cccCchhhhhhHHHHHhccccccee-echhhhh
Confidence 6544 678888888888877 688888888888888888766 5677888888888888888887666 4777654
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.62 E-value=8.8e-15 Score=139.86 Aligned_cols=109 Identities=37% Similarity=0.520 Sum_probs=64.5
Q ss_pred CccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc-c---------------------CCccEEEccccCC
Q 025516 133 KLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-S---------------------GNIGQLFLSGTAI 190 (251)
Q Consensus 133 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~---------------------~~L~~L~l~~n~i 190 (251)
+|+.|++++|.....+|.+++++++|+.|++++|...+.+|... + .+|++|++++|.+
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i 858 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGI 858 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCC
Confidence 45555555555455555555555555555555554444444322 3 4556666666666
Q ss_pred ccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCC
Q 025516 191 EELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRL 241 (251)
Q Consensus 191 ~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 241 (251)
+++|..+..+++|+.|++++|+.+..+|..+..+++|+.+++++|..+..+
T Consensus 859 ~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 859 EEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred ccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 666666666667777777666666666666666667777777766655433
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=9.8e-18 Score=122.32 Aligned_cols=135 Identities=31% Similarity=0.401 Sum_probs=107.3
Q ss_pred cCCceEeecCCCccc----cccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCC-CCCccc--cCCccEEE
Q 025516 112 AEKLMFLEVPNSDIE----QLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLK-RLPEIS--SGNIGQLF 184 (251)
Q Consensus 112 l~~L~~L~l~~n~i~----~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~--~~~L~~L~ 184 (251)
+.+|+.|++.+|+|. .++.+++|+.|+++.|+ ....|..||.++-|+.||+++|.... .+|..+ +..|+.|+
T Consensus 55 l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlraly 133 (264)
T KOG0617|consen 55 LKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY 133 (264)
T ss_pred hhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence 344444444444443 35678889999998876 77788889999999999999887654 667655 78899999
Q ss_pred ccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhcc
Q 025516 185 LSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYR 249 (251)
Q Consensus 185 l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~ 249 (251)
+++|.+.-+|..++++++|+.|.+.+|.+ -++|..++.++.|+.|.+.+| .++.+|++++.+.
T Consensus 134 l~dndfe~lp~dvg~lt~lqil~lrdndl-l~lpkeig~lt~lrelhiqgn-rl~vlppel~~l~ 196 (264)
T KOG0617|consen 134 LGDNDFEILPPDVGKLTNLQILSLRDNDL-LSLPKEIGDLTRLRELHIQGN-RLTVLPPELANLD 196 (264)
T ss_pred hcCCCcccCChhhhhhcceeEEeeccCch-hhCcHHHHHHHHHHHHhcccc-eeeecChhhhhhh
Confidence 99999999999999999999999999985 467899999999999999995 5557999888764
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.61 E-value=1.5e-17 Score=135.66 Aligned_cols=108 Identities=29% Similarity=0.341 Sum_probs=83.7
Q ss_pred CccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCcc-cccCccCCEEecc
Q 025516 133 KLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPSS-FELLLRLWLLDLS 209 (251)
Q Consensus 133 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~ 209 (251)
+|..|++++| +...+|..++.+..|++|+++.|++ ..+|... +..++.+-.+.|+++++++. +.+|.+|+.||+.
T Consensus 436 kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~NrF-r~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~ 513 (565)
T KOG0472|consen 436 KLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNRF-RMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQ 513 (565)
T ss_pred cceeeecccc-hhhhcchhhhhhhhhheeccccccc-ccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccC
Confidence 7778888765 5777888888888888888888743 4444433 44555555666888887765 8899999999999
Q ss_pred CCcCCccCcccccCCCCCCEEeccCCcCCCCCChhh
Q 025516 210 DCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRL 245 (251)
Q Consensus 210 ~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l 245 (251)
+|.+ ..+|..+++|++|++|++++|++. .|+..
T Consensus 514 nNdl-q~IPp~LgnmtnL~hLeL~gNpfr--~Pr~~ 546 (565)
T KOG0472|consen 514 NNDL-QQIPPILGNMTNLRHLELDGNPFR--QPRHQ 546 (565)
T ss_pred CCch-hhCChhhccccceeEEEecCCccC--CCHHH
Confidence 9884 677899999999999999999887 67654
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.61 E-value=8.9e-15 Score=132.16 Aligned_cols=86 Identities=28% Similarity=0.316 Sum_probs=59.3
Q ss_pred CccEEecCCCCCCCCCCccccCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCc
Q 025516 157 FLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCS 236 (251)
Q Consensus 157 ~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~ 236 (251)
+|+.|++++|.+. .+|.. .++|+.|++++|.++.+|.. +.+|+.|++++|++. .+|..++++++|+.|++++|+
T Consensus 383 ~L~~LdLs~N~Lt-~LP~l-~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 383 GLKELIVSGNRLT-SLPVL-PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred ccceEEecCCccc-CCCCc-ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCC
Confidence 4555555555433 23322 34666777777777666643 245677888887754 678889999999999999999
Q ss_pred CCCCCChhhhhc
Q 025516 237 NLQRLPDRLASY 248 (251)
Q Consensus 237 ~~~~~p~~l~~l 248 (251)
+.+..|..+..+
T Consensus 457 Ls~~~~~~L~~l 468 (788)
T PRK15387 457 LSERTLQALREI 468 (788)
T ss_pred CCchHHHHHHHH
Confidence 998888877544
No 12
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=1.5e-16 Score=116.19 Aligned_cols=141 Identities=27% Similarity=0.362 Sum_probs=122.6
Q ss_pred CCCCCCCcCCceEeecCCCcccc----ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cC
Q 025516 105 SLPSNHSAEKLMFLEVPNSDIEQ----LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SG 178 (251)
Q Consensus 105 ~~~~~~~l~~L~~L~l~~n~i~~----l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~ 178 (251)
.+|..+.+.+++.|.+++|++.. +..+.+|++|++++|+ .+.+|.+++.+++|+.|+++-|+ +..+|..+ ++
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p 102 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFP 102 (264)
T ss_pred hcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhh-hhcCccccCCCc
Confidence 45556678899999999999974 5567899999999886 88899999999999999999986 45666655 89
Q ss_pred CccEEEccccCCc--cCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhcc
Q 025516 179 NIGQLFLSGTAIE--ELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYR 249 (251)
Q Consensus 179 ~L~~L~l~~n~i~--~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~ 249 (251)
.|+.|++.+|.++ .+|-.|..+..|+.|.+++|.+ ..+|..++++++||.|.+..|+++ .+|.+++.+.
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt 173 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLT 173 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchh-hCcHHHHHHH
Confidence 9999999999998 5898888999999999999995 677999999999999999998877 6999988765
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.56 E-value=4e-17 Score=133.29 Aligned_cols=189 Identities=27% Similarity=0.369 Sum_probs=131.0
Q ss_pred chhhhcCCCccEEEeecccCCCCCccccccCCcce------------------ecceeEEeeccCCCCCCCCCC-CcCCc
Q 025516 55 PNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLR------------------FAEVKYLHWHGYPLKSLPSNH-SAEKL 115 (251)
Q Consensus 55 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~------------------~l~L~~~~l~~~~~~~~~~~~-~l~~L 115 (251)
|.+++++.+++.++.+.|.+.. .|.++.....+. .+++...+-.++.+.++|..+ .+..+
T Consensus 84 p~aig~l~~l~~l~vs~n~ls~-lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l 162 (565)
T KOG0472|consen 84 PAAIGELEALKSLNVSHNKLSE-LPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKL 162 (565)
T ss_pred CHHHHHHHHHHHhhcccchHhh-ccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHH
Confidence 4455666666666666555442 222222222222 233334444456666666655 56777
Q ss_pred eEeecCCCcccccc----CcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc-cCCccEEEccccCC
Q 025516 116 MFLEVPNSDIEQLW----NSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-SGNIGQLFLSGTAI 190 (251)
Q Consensus 116 ~~L~l~~n~i~~l~----~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~~n~i 190 (251)
..+++.+|.+..++ .+..|+.||...| ..+.+|..++++.+|+-|++..|.+ ..+|+.. +..|.+|+++.|+|
T Consensus 163 ~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki-~~lPef~gcs~L~Elh~g~N~i 240 (565)
T KOG0472|consen 163 SKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKI-RFLPEFPGCSLLKELHVGENQI 240 (565)
T ss_pred HHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhccc-ccCCCCCccHHHHHHHhcccHH
Confidence 77777777776543 3668999998887 4888999999999999999999864 5556544 77788888888888
Q ss_pred ccCCcccc-cCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhc
Q 025516 191 EELPSSFE-LLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASY 248 (251)
Q Consensus 191 ~~lp~~~~-~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l 248 (251)
..+|++.+ +++++..||+.+|+ .++.|..+..+.+|.+||+++|.+. .+|..++.+
T Consensus 241 ~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl 297 (565)
T KOG0472|consen 241 EMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL 297 (565)
T ss_pred HhhHHHHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccCCccc-cCCcccccc
Confidence 88887765 78888888888888 4677888888888888888886544 688877765
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.51 E-value=1.6e-13 Score=124.49 Aligned_cols=139 Identities=23% Similarity=0.270 Sum_probs=64.3
Q ss_pred EEeeccCCCCCCCCCCCcCCceEeecCCCccccccC--cCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCC
Q 025516 95 YLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWN--SVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRL 172 (251)
Q Consensus 95 ~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~l~~--~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 172 (251)
.+++++|.+..+|..+ ..+|+.|++++|++..++. ..+|+.|++++|.+. .+|..+. .+|+.|++++|.+. .+
T Consensus 245 ~L~Ls~N~L~~LP~~l-~s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~L 319 (754)
T PRK15370 245 EMELSINRITELPERL-PSALQSLDLFHNKISCLPENLPEELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-AL 319 (754)
T ss_pred EEECcCCccCcCChhH-hCCCCEEECcCCccCccccccCCCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-cC
Confidence 3333444444444322 2356666666666654442 125666666666533 3333221 23444444444332 23
Q ss_pred CccccCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChh
Q 025516 173 PEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDR 244 (251)
Q Consensus 173 ~~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~ 244 (251)
|....++|+.|++++|.++.+|..+. ++|+.|++++|++. .+|..+. ++|++|++++|++. .+|..
T Consensus 320 P~~l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~ 385 (754)
T PRK15370 320 PETLPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPEN 385 (754)
T ss_pred CccccccceeccccCCccccCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHh
Confidence 33233455555555555555554332 45555555555543 3443331 35555555554433 34443
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.48 E-value=1.1e-13 Score=125.56 Aligned_cols=190 Identities=22% Similarity=0.301 Sum_probs=107.4
Q ss_pred ceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceec----------------ceeEEeecc
Q 025516 37 KIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFA----------------EVKYLHWHG 100 (251)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l----------------~L~~~~l~~ 100 (251)
.+..+.+..+.+..+ |..+ ..+|+.|++++|.+.... ..+ +..++.+ .|+.+++++
T Consensus 200 ~L~~L~Ls~N~LtsL---P~~l--~~nL~~L~Ls~N~LtsLP-~~l--~~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~ 271 (754)
T PRK15370 200 QITTLILDNNELKSL---PENL--QGNIKTLYANSNQLTSIP-ATL--PDTIQEMELSINRITELPERLPSALQSLDLFH 271 (754)
T ss_pred CCcEEEecCCCCCcC---Chhh--ccCCCEEECCCCccccCC-hhh--hccccEEECcCCccCcCChhHhCCCCEEECcC
Confidence 345555555554433 2222 246777777777766422 111 1111111 355556666
Q ss_pred CCCCCCCCCCCcCCceEeecCCCccccccC--cCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccccC
Q 025516 101 YPLKSLPSNHSAEKLMFLEVPNSDIEQLWN--SVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSG 178 (251)
Q Consensus 101 ~~~~~~~~~~~l~~L~~L~l~~n~i~~l~~--~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 178 (251)
+.+..+|..+ ..+|+.|++++|+++.++. ..+|+.|++++|.+. .+|..+ .++|++|++++|.+.+ +|...++
T Consensus 272 N~L~~LP~~l-~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~~ 346 (754)
T PRK15370 272 NKISCLPENL-PEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALTS-LPASLPP 346 (754)
T ss_pred CccCcccccc-CCCCcEEECCCCccccCcccchhhHHHHHhcCCccc-cCCccc--cccceeccccCCcccc-CChhhcC
Confidence 6666676544 3578888998888877654 235777777777643 345433 2466777777765433 4544456
Q ss_pred CccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhh
Q 025516 179 NIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRL 245 (251)
Q Consensus 179 ~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l 245 (251)
+|+.|++++|+++.+|..+. ++|+.|++++|++. .+|..+. .+|+.|++++|++. .+|..+
T Consensus 347 sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl 407 (754)
T PRK15370 347 ELQVLDVSKNQITVLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESL 407 (754)
T ss_pred cccEEECCCCCCCcCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhH
Confidence 67777777777666665442 46667777766644 3444332 24666666665443 455544
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.44 E-value=9.2e-15 Score=130.19 Aligned_cols=120 Identities=30% Similarity=0.352 Sum_probs=82.8
Q ss_pred ceEeecCCCccc-----cccCcCCccEEEcCCCcCCccccCc-cccCCCccEEecCCCCCCCCCCccc--cCCccEEEcc
Q 025516 115 LMFLEVPNSDIE-----QLWNSVKLVILNLSGSKSLKSLPAG-IFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLS 186 (251)
Q Consensus 115 L~~L~l~~n~i~-----~l~~~~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~ 186 (251)
|+.|.+.+|.++ -+.++.+|++|+|++|+ ++.+|.+ +.++..|++|++++|++ +.+|... +..|+.|...
T Consensus 361 Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGNkL-~~Lp~tva~~~~L~tL~ah 438 (1081)
T KOG0618|consen 361 LQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGNKL-TTLPDTVANLGRLHTLRAH 438 (1081)
T ss_pred HHHHHHhcCcccccchhhhccccceeeeeecccc-cccCCHHHHhchHHhHHHhcccchh-hhhhHHHHhhhhhHHHhhc
Confidence 444455555443 24455688888888886 5555543 55778888888888864 4455433 6778888888
Q ss_pred ccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcC
Q 025516 187 GTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSN 237 (251)
Q Consensus 187 ~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~ 237 (251)
+|++..+| ++..++.|+.+|++.|.+....-......++|++||+++|..
T Consensus 439 sN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 439 SNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred CCceeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 88888888 677888999999998887643322222337899999998864
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.42 E-value=1.7e-14 Score=119.80 Aligned_cols=207 Identities=20% Similarity=0.152 Sum_probs=134.8
Q ss_pred CCCceEEEEeecCCccc----ccCCchhhhcCCCccEEEeecccCCCCCccccccCCc---ceecceeEEeeccCCCCCC
Q 025516 34 GTEKIEGICLDLSKVKE----IPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQD---LRFAEVKYLHWHGYPLKSL 106 (251)
Q Consensus 34 ~~~~~~~~~l~~~~~~~----~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~---l~~l~L~~~~l~~~~~~~~ 106 (251)
....++.+.+....... ....+..+..+++|+.|++++|.+....+..+..+.. ++.++++.+.+++.....+
T Consensus 49 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l 128 (319)
T cd00116 49 PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLL 128 (319)
T ss_pred hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHH
Confidence 34446666665544331 1122456778899999999999887655444444443 5566666665543222222
Q ss_pred CCCC-Cc-CCceEeecCCCccc---------cccCcCCccEEEcCCCcCCcc----ccCccccCCCccEEecCCCCCCCC
Q 025516 107 PSNH-SA-EKLMFLEVPNSDIE---------QLWNSVKLVILNLSGSKSLKS----LPAGIFNLEFLTELDLSGCSKLKR 171 (251)
Q Consensus 107 ~~~~-~l-~~L~~L~l~~n~i~---------~l~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~ 171 (251)
.... .+ .+|+.+++++|.+. .+..+.+|++|++++|.+.+. ++..+...++|++|++++|.+...
T Consensus 129 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 208 (319)
T cd00116 129 AKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE 208 (319)
T ss_pred HHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChH
Confidence 2222 34 78999999999876 244556899999999886642 333445567899999999976532
Q ss_pred C----Ccc--ccCCccEEEccccCCcc--CCcccc----cCccCCEEeccCCcCC----ccCcccccCCCCCCEEeccCC
Q 025516 172 L----PEI--SSGNIGQLFLSGTAIEE--LPSSFE----LLLRLWLLDLSDCKRL----KSLPSSLCKLKSLELLSLRGC 235 (251)
Q Consensus 172 ~----~~~--~~~~L~~L~l~~n~i~~--lp~~~~----~l~~L~~L~l~~n~~~----~~~p~~~~~l~~L~~L~l~~n 235 (251)
- +.. .+++|++|++++|.++. +..... ..+.|+.|++++|.+. ..++..+..+++|+++++++|
T Consensus 209 ~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 209 GASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred HHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 1 111 16789999999998873 111112 2478999999999876 234455677789999999998
Q ss_pred cCCCC
Q 025516 236 SNLQR 240 (251)
Q Consensus 236 ~~~~~ 240 (251)
.+...
T Consensus 289 ~l~~~ 293 (319)
T cd00116 289 KFGEE 293 (319)
T ss_pred CCcHH
Confidence 77754
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.37 E-value=2.3e-14 Score=116.94 Aligned_cols=194 Identities=21% Similarity=0.187 Sum_probs=129.1
Q ss_pred eEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcce-ecceeEEeeccCCCCCCCCCC--CcCC
Q 025516 38 IEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLR-FAEVKYLHWHGYPLKSLPSNH--SAEK 114 (251)
Q Consensus 38 ~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~-~l~L~~~~l~~~~~~~~~~~~--~l~~ 114 (251)
...+.++-+.+. .+++.+|+.+++|+.|+++.|.++.+.+.+|..+.++. .+...+|+|.+ +|+.. ++..
T Consensus 69 tveirLdqN~I~--~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~-----l~k~~F~gL~s 141 (498)
T KOG4237|consen 69 TVEIRLDQNQIS--SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD-----LPKGAFGGLSS 141 (498)
T ss_pred ceEEEeccCCcc--cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh-----hhhhHhhhHHH
Confidence 344555555554 55589999999999999999999998888888887766 44445565543 22211 2323
Q ss_pred ceE------------------------eecCCCccccccCcC--------------------------------------
Q 025516 115 LMF------------------------LEVPNSDIEQLWNSV-------------------------------------- 132 (251)
Q Consensus 115 L~~------------------------L~l~~n~i~~l~~~~-------------------------------------- 132 (251)
++. |.+..|.+..++...
T Consensus 142 lqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets 221 (498)
T KOG4237|consen 142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS 221 (498)
T ss_pred HHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence 332 333333322111100
Q ss_pred -------------------------CccEE---EcCCCcCCcccc-CccccCCCccEEecCCCCCCCCCCccc--cCCcc
Q 025516 133 -------------------------KLVIL---NLSGSKSLKSLP-AGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIG 181 (251)
Q Consensus 133 -------------------------~L~~L---~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~ 181 (251)
.++.+ -.+.|......| ..|.++++|+.|++++|.+...-+..+ ...++
T Consensus 222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~ 301 (498)
T KOG4237|consen 222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQ 301 (498)
T ss_pred cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhh
Confidence 11111 011122222223 235678899999999998777666655 67899
Q ss_pred EEEccccCCccCCc-ccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCC
Q 025516 182 QLFLSGTAIEELPS-SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNL 238 (251)
Q Consensus 182 ~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~ 238 (251)
+|.|..|++..+.. .|.++..|+.|+|.+|+++...|.+|..+.+|.+|.+-.|+..
T Consensus 302 eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 302 ELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 99999999887665 5678999999999999998888999999999999999887664
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.37 E-value=1.8e-12 Score=117.44 Aligned_cols=83 Identities=25% Similarity=0.215 Sum_probs=67.2
Q ss_pred CccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccccCCccEEEccccCCccCCcccccCccCCEEeccCCc
Q 025516 133 KLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCK 212 (251)
Q Consensus 133 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~ 212 (251)
+|+.|++++|.+. .+|.. .++|+.|++++|.+. .+|.. +.+|+.|++++|+++.+|..++++++|+.|++++|+
T Consensus 383 ~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l-~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 383 GLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML-PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred ccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc-hhhhhhhhhccCcccccChHHhhccCCCeEECCCCC
Confidence 5777888777644 45542 357999999999865 46653 468999999999999999999999999999999999
Q ss_pred CCccCcccc
Q 025516 213 RLKSLPSSL 221 (251)
Q Consensus 213 ~~~~~p~~~ 221 (251)
+.+..|..+
T Consensus 457 Ls~~~~~~L 465 (788)
T PRK15387 457 LSERTLQAL 465 (788)
T ss_pred CCchHHHHH
Confidence 988777665
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.31 E-value=2.9e-13 Score=112.48 Aligned_cols=201 Identities=19% Similarity=0.152 Sum_probs=138.0
Q ss_pred CCCceEEEEeecCCcccccCCchhhhcCCC---ccEEEeecccCCCCCcc----ccccC-CcceecceeEEeeccCCCCC
Q 025516 34 GTEKIEGICLDLSKVKEIPLNPNTFAKMRK---LRFLKFYSSSFNGENRC----KVSHL-QDLRFAEVKYLHWHGYPLKS 105 (251)
Q Consensus 34 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~---L~~L~l~~n~~~~~~~~----~l~~l-~~l~~l~L~~~~l~~~~~~~ 105 (251)
...+++.+.+..+.... ..+..+..+.. |+.|++++|.+.+.... .+..+ ..++.+++++|.+++.....
T Consensus 79 ~~~~L~~L~l~~~~~~~--~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 79 KGCGLQELDLSDNALGP--DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred hcCceeEEEccCCCCCh--hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 36678888776665542 22455655655 99999999988742222 22333 55666666666665422223
Q ss_pred CCCCC-CcCCceEeecCCCcccc---------ccCcCCccEEEcCCCcCCcc----ccCccccCCCccEEecCCCCCCCC
Q 025516 106 LPSNH-SAEKLMFLEVPNSDIEQ---------LWNSVKLVILNLSGSKSLKS----LPAGIFNLEFLTELDLSGCSKLKR 171 (251)
Q Consensus 106 ~~~~~-~l~~L~~L~l~~n~i~~---------l~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~ 171 (251)
++..+ .+.+|++|++++|.+.+ +...++|++|++++|.+.+. ++..+..+++|++|++++|.+...
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~ 236 (319)
T cd00116 157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA 236 (319)
T ss_pred HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH
Confidence 33333 46789999999998862 34456899999999976533 334456788999999999986541
Q ss_pred CC----cc---ccCCccEEEccccCCc-----cCCcccccCccCCEEeccCCcCCcc----CcccccCC-CCCCEEeccC
Q 025516 172 LP----EI---SSGNIGQLFLSGTAIE-----ELPSSFELLLRLWLLDLSDCKRLKS----LPSSLCKL-KSLELLSLRG 234 (251)
Q Consensus 172 ~~----~~---~~~~L~~L~l~~n~i~-----~lp~~~~~l~~L~~L~l~~n~~~~~----~p~~~~~l-~~L~~L~l~~ 234 (251)
.. .. ..+.|++|++++|.++ .++..+..+++|+.+++++|.+... ....+... +.|+.+++.+
T Consensus 237 ~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 237 GAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKD 316 (319)
T ss_pred HHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCC
Confidence 11 11 1379999999999986 3445566778999999999998754 44555555 7899999988
Q ss_pred Cc
Q 025516 235 CS 236 (251)
Q Consensus 235 n~ 236 (251)
|+
T Consensus 317 ~~ 318 (319)
T cd00116 317 DS 318 (319)
T ss_pred CC
Confidence 75
No 21
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.31 E-value=2.1e-12 Score=97.02 Aligned_cols=130 Identities=25% Similarity=0.294 Sum_probs=45.1
Q ss_pred CCCCCCCCCCcCCceEeecCCCccccc---c-CcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCcc--
Q 025516 102 PLKSLPSNHSAEKLMFLEVPNSDIEQL---W-NSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEI-- 175 (251)
Q Consensus 102 ~~~~~~~~~~l~~L~~L~l~~n~i~~l---~-~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-- 175 (251)
.+...+...+...+++|++.+|+|+.+ + .+.+|+.|++++|. ...+. .+..++.|++|++++|++....+..
T Consensus 8 ~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~-I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~ 85 (175)
T PF14580_consen 8 MIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQ-ITKLE-GLPGLPRLKTLDLSNNRISSISEGLDK 85 (175)
T ss_dssp ----------------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-CHHHHH
T ss_pred ccccccccccccccccccccccccccccchhhhhcCCCEEECCCCC-Ccccc-CccChhhhhhcccCCCCCCccccchHH
Confidence 344555555666777788888877644 3 34578888888876 33443 3666788888888888765543322
Q ss_pred ccCCccEEEccccCCccCCc--ccccCccCCEEeccCCcCCccC---cccccCCCCCCEEecc
Q 025516 176 SSGNIGQLFLSGTAIEELPS--SFELLLRLWLLDLSDCKRLKSL---PSSLCKLKSLELLSLR 233 (251)
Q Consensus 176 ~~~~L~~L~l~~n~i~~lp~--~~~~l~~L~~L~l~~n~~~~~~---p~~~~~l~~L~~L~l~ 233 (251)
.+++|++|++++|+|.++.+ .+..+++|+.|++.+|++...- ...+..+|+|+.||-.
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 26788888888888875543 4667888888888888876431 1245778888888654
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.24 E-value=9.5e-13 Score=117.63 Aligned_cols=198 Identities=24% Similarity=0.245 Sum_probs=137.0
Q ss_pred HhccCCCceEEEEeecCCcccccCCchhhhcCCC-ccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCC
Q 025516 30 LSSKGTEKIEGICLDLSKVKEIPLNPNTFAKMRK-LRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPS 108 (251)
Q Consensus 30 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~ 108 (251)
....+...++.+.+..+++.... ...|..... ++.|..+.|.+.......-.....++.+++-.|.+.+. .+|.
T Consensus 304 ~~le~~~sL~tLdL~~N~L~~lp--~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~---c~p~ 378 (1081)
T KOG0618|consen 304 PFLEGLKSLRTLDLQSNNLPSLP--DNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDS---CFPV 378 (1081)
T ss_pred Ccccccceeeeeeehhccccccc--hHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccccc---chhh
Confidence 33344555666666555554432 334443333 55555555554432211112344566777777877773 4666
Q ss_pred CCCcCCceEeecCCCcccccc-----CcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc-cCCccE
Q 025516 109 NHSAEKLMFLEVPNSDIEQLW-----NSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-SGNIGQ 182 (251)
Q Consensus 109 ~~~l~~L~~L~l~~n~i~~l~-----~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~ 182 (251)
..+..+|+.|++++|++..++ ++..|+.|++++|+ +..+|..+..+..|++|-..+|.+ ..+|+.. ++.|+.
T Consensus 379 l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN~l-~~fPe~~~l~qL~~ 456 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSNQL-LSFPELAQLPQLKV 456 (1081)
T ss_pred hccccceeeeeecccccccCCHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCCce-eechhhhhcCcceE
Confidence 668999999999999998655 56689999999997 788999999999999999999875 4555544 899999
Q ss_pred EEccccCCcc--CCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCC
Q 025516 183 LFLSGTAIEE--LPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGC 235 (251)
Q Consensus 183 L~l~~n~i~~--lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n 235 (251)
+|+++|+++. +|....+ ++|++||+++|..+..--+.+..+.++...++.-+
T Consensus 457 lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 457 LDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred EecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 9999999984 4544433 89999999999864443455666777777776654
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=5.5e-12 Score=104.40 Aligned_cols=212 Identities=17% Similarity=0.129 Sum_probs=145.2
Q ss_pred chHHHHHhccCCCceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCcc--ccccCCcceecceeEEeeccC
Q 025516 24 DVVYEELSSKGTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRC--KVSHLQDLRFAEVKYLHWHGY 101 (251)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~l~~l~~l~~l~L~~~~l~~~ 101 (251)
.+.....+.+..++++.+.++-...+..... .....|++++.|+++.|-|....+. -...+++|+.|+|+.|.+...
T Consensus 109 GfDki~akQsn~kkL~~IsLdn~~V~~~~~~-~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~ 187 (505)
T KOG3207|consen 109 GFDKIAAKQSNLKKLREISLDNYRVEDAGIE-EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNF 187 (505)
T ss_pred cHHHHHHHhhhHHhhhheeecCccccccchh-hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCC
Confidence 3455555566778888888888776655432 4667899999999999987643221 124577888888888887652
Q ss_pred CCCCCCCCCCcCCceEeecCCCcccc------ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCC--C
Q 025516 102 PLKSLPSNHSAEKLMFLEVPNSDIEQ------LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRL--P 173 (251)
Q Consensus 102 ~~~~~~~~~~l~~L~~L~l~~n~i~~------l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~ 173 (251)
.-+.. ...+++|+.|.++.|++++ +-.+++|+.|++.+|.....-......++.|++||+++|.+...- +
T Consensus 188 ~~s~~--~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~ 265 (505)
T KOG3207|consen 188 ISSNT--TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGY 265 (505)
T ss_pred ccccc--hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccc
Confidence 11111 1147889999999999973 345778999999988533322222334788999999999766532 2
Q ss_pred cc-ccCCccEEEccccCCcc--CCcc-----cccCccCCEEeccCCcCCccCc--ccccCCCCCCEEeccCCcCCC
Q 025516 174 EI-SSGNIGQLFLSGTAIEE--LPSS-----FELLLRLWLLDLSDCKRLKSLP--SSLCKLKSLELLSLRGCSNLQ 239 (251)
Q Consensus 174 ~~-~~~~L~~L~l~~n~i~~--lp~~-----~~~l~~L~~L~l~~n~~~~~~p--~~~~~l~~L~~L~l~~n~~~~ 239 (251)
.. .++.|..|+++.|.+.+ +|+. ...+++|+.|++..|++. .++ ..+..+++|..|.+..|.+..
T Consensus 266 ~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 266 KVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhcccccccc
Confidence 22 28899999999998884 3432 346788999999999863 232 456777788888777765543
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.16 E-value=1.1e-10 Score=105.28 Aligned_cols=109 Identities=22% Similarity=0.254 Sum_probs=87.6
Q ss_pred ccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCc-cCCcccccCccCCEEeccC
Q 025516 134 LVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIE-ELPSSFELLLRLWLLDLSD 210 (251)
Q Consensus 134 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~ 210 (251)
++.|+|++|.+.+.+|..++.+++|+.|++++|.+.+.+|... ++.|+.|++++|+++ .+|..++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 6778888888778888888888888888888888887777544 788888888888887 6788888888888888888
Q ss_pred CcCCccCcccccCC-CCCCEEeccCCcCCCCCC
Q 025516 211 CKRLKSLPSSLCKL-KSLELLSLRGCSNLQRLP 242 (251)
Q Consensus 211 n~~~~~~p~~~~~l-~~L~~L~l~~n~~~~~~p 242 (251)
|.+.+.+|..++.+ .++..+++.+|..+...|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCC
Confidence 88888888877654 467778888877766655
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.13 E-value=2.7e-11 Score=111.83 Aligned_cols=158 Identities=23% Similarity=0.279 Sum_probs=98.8
Q ss_pred CchhHhHHHHHHHHhhhhc----CCcchHHH------HHhccCCCceEEEEeecCCcccccCCchhhhcCCCccEEEeec
Q 025516 2 EALEYHDALELFSRHAFKQ----NHPDVVYE------ELSSKGTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYS 71 (251)
Q Consensus 2 ~~~~~hd~~~~~~~~~~~~----~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 71 (251)
+.|+|||+++++|.+++.. .+...... ..+......++.+++-.++...+...+ +.++|+.|.+.+
T Consensus 479 ~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~----~~~~L~tLll~~ 554 (889)
T KOG4658|consen 479 ETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSS----ENPKLRTLLLQR 554 (889)
T ss_pred eEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCC----CCCccceEEEee
Confidence 5799999999999999831 11111111 223334455666766666554443222 345788888887
Q ss_pred cc--CCCCCccccccCCcceecceeEEeeccCCCCCCCCCC-CcCCceEeecCCCccccc----cCcCCccEEEcCCCcC
Q 025516 72 SS--FNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH-SAEKLMFLEVPNSDIEQL----WNSVKLVILNLSGSKS 144 (251)
Q Consensus 72 n~--~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l~~L~~L~l~~n~i~~l----~~~~~L~~L~l~~n~~ 144 (251)
|. +.......|..++.|.+++|+. +.....+|... .+.+|++|+++++.++.+ .++.+|.+|++.++..
T Consensus 555 n~~~l~~is~~ff~~m~~LrVLDLs~----~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~ 630 (889)
T KOG4658|consen 555 NSDWLLEISGEFFRSLPLLRVLDLSG----NSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGR 630 (889)
T ss_pred cchhhhhcCHHHHhhCcceEEEECCC----CCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccc
Confidence 75 2222222344555555555544 23345788777 488888888888888754 4566888888887766
Q ss_pred CccccCccccCCCccEEecCCCC
Q 025516 145 LKSLPAGIFNLEFLTELDLSGCS 167 (251)
Q Consensus 145 ~~~~~~~~~~l~~L~~L~l~~n~ 167 (251)
...+|.....+++|++|.+....
T Consensus 631 l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 631 LESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccccchhhhcccccEEEeeccc
Confidence 66666656668888888886543
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.13 E-value=1.4e-12 Score=111.10 Aligned_cols=172 Identities=22% Similarity=0.268 Sum_probs=99.5
Q ss_pred hhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCcccc----ccCc
Q 025516 56 NTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQ----LWNS 131 (251)
Q Consensus 56 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~----l~~~ 131 (251)
..++.+..|..+.+..|.+.. .+..+..+..+.+++++.|+++ .+|...+.--|+.|-+++|++.. ++..
T Consensus 92 ~~~~~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS-----~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~ 165 (722)
T KOG0532|consen 92 EEACAFVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLS-----HLPDGLCDLPLKVLIVSNNKLTSLPEEIGLL 165 (722)
T ss_pred hHHHHHHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhh-----cCChhhhcCcceeEEEecCccccCCcccccc
Confidence 344444445555554444332 2333344444444444444433 35554455556666666666643 3334
Q ss_pred CCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccccCCccEEEccccCCccCCcccccCccCCEEeccCC
Q 025516 132 VKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDC 211 (251)
Q Consensus 132 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n 211 (251)
.+|..||.+.|+ ...+|..++++.+|+.|.+..|......++...-.|..||+++|+++.+|-.|++|+.|++|.|.+|
T Consensus 166 ~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 166 PTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred hhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCceeecchhhhhhhhheeeeeccC
Confidence 456666666665 5556666666777777777766655544444455677777777777777777777777777777777
Q ss_pred cCCccCcccc---cCCCCCCEEeccCC
Q 025516 212 KRLKSLPSSL---CKLKSLELLSLRGC 235 (251)
Q Consensus 212 ~~~~~~p~~~---~~l~~L~~L~l~~n 235 (251)
+++ +.|..+ |...-.++|+...|
T Consensus 245 PLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 245 PLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CCC-CChHHHHhccceeeeeeecchhc
Confidence 743 334433 34445566666666
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.12 E-value=1.7e-12 Score=110.68 Aligned_cols=192 Identities=23% Similarity=0.314 Sum_probs=144.5
Q ss_pred eecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCC-CcCCceEeecC
Q 025516 43 LDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH-SAEKLMFLEVP 121 (251)
Q Consensus 43 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l~~L~~L~l~ 121 (251)
+.......+...... ..+..-...+++.|++... +..+..+..++.+.|..|. +..+|... ++..|++++++
T Consensus 57 Ls~rrlk~fpr~a~~-~~ltdt~~aDlsrNR~~el-p~~~~~f~~Le~liLy~n~-----~r~ip~~i~~L~~lt~l~ls 129 (722)
T KOG0532|consen 57 LSGRRLKEFPRGAAS-YDLTDTVFADLSRNRFSEL-PEEACAFVSLESLILYHNC-----IRTIPEAICNLEALTFLDLS 129 (722)
T ss_pred cccchhhcCCCcccc-ccccchhhhhccccccccC-chHHHHHHHHHHHHHHhcc-----ceecchhhhhhhHHHHhhhc
Confidence 444444555443333 4667778889999988753 2333334444444444444 44577665 68999999999
Q ss_pred CCccccccCc---CCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc-cCCccEEEccccCCccCCccc
Q 025516 122 NSDIEQLWNS---VKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-SGNIGQLFLSGTAIEELPSSF 197 (251)
Q Consensus 122 ~n~i~~l~~~---~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~~n~i~~lp~~~ 197 (251)
.|+++.++.. --|++|-+++|+ .+.+|..++.+.+|..||.+.|.+.+-.++.. +.+|+.|++..|++..+|+++
T Consensus 130 ~NqlS~lp~~lC~lpLkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El 208 (722)
T KOG0532|consen 130 SNQLSHLPDGLCDLPLKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEEL 208 (722)
T ss_pred cchhhcCChhhhcCcceeEEEecCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHH
Confidence 9999876542 249999999876 88899999988999999999998766666555 889999999999999999998
Q ss_pred ccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhh
Q 025516 198 ELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRL 245 (251)
Q Consensus 198 ~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l 245 (251)
+.+ .|..||++.|+ ...+|..|.+|..|++|-+.+|++.. =|..+
T Consensus 209 ~~L-pLi~lDfScNk-is~iPv~fr~m~~Lq~l~LenNPLqS-PPAqI 253 (722)
T KOG0532|consen 209 CSL-PLIRLDFSCNK-ISYLPVDFRKMRHLQVLQLENNPLQS-PPAQI 253 (722)
T ss_pred hCC-ceeeeecccCc-eeecchhhhhhhhheeeeeccCCCCC-ChHHH
Confidence 855 59999999988 56789999999999999999987653 34443
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.08 E-value=2.5e-11 Score=99.51 Aligned_cols=178 Identities=21% Similarity=0.202 Sum_probs=128.3
Q ss_pred cCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCccccc---
Q 025516 52 PLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQL--- 128 (251)
Q Consensus 52 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~l--- 128 (251)
..+...|+++++|+.|++++|.++.+...+|.....++.+.|..|.+....-+-+. ++..|+.|++.+|+|+.+
T Consensus 264 ~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~---~ls~L~tL~L~~N~it~~~~~ 340 (498)
T KOG4237|consen 264 ICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQ---GLSGLKTLSLYDNQITTVAPG 340 (498)
T ss_pred cChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhh---ccccceeeeecCCeeEEEecc
Confidence 33466899999999999999999999999999999999888888877652211111 689999999999999843
Q ss_pred --cCcCCccEEEcCCCcCC-----ccccCcc-----------ccCCCccEEecCCC------------------------
Q 025516 129 --WNSVKLVILNLSGSKSL-----KSLPAGI-----------FNLEFLTELDLSGC------------------------ 166 (251)
Q Consensus 129 --~~~~~L~~L~l~~n~~~-----~~~~~~~-----------~~l~~L~~L~l~~n------------------------ 166 (251)
..+.+|..|++-.|.+. ..+.+|+ .+...++.++++..
T Consensus 341 aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~ 420 (498)
T KOG4237|consen 341 AFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPP 420 (498)
T ss_pred cccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCC
Confidence 34557777877554422 1111111 11223555555432
Q ss_pred ------------CCCCCCCccccCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccC
Q 025516 167 ------------SKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRG 234 (251)
Q Consensus 167 ------------~~~~~~~~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 234 (251)
..++.+|......-++|++.+|.++.+|.. .+.+| .+|+++|++...-...|.++++|.+|.++.
T Consensus 421 c~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsy 497 (498)
T KOG4237|consen 421 CTCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAITSVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSY 497 (498)
T ss_pred cchhhhhHhhcccchhhcCCCCCchhHHHhcccchhcccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEec
Confidence 122334444455789999999999999987 67788 899999998766667889999999999887
Q ss_pred C
Q 025516 235 C 235 (251)
Q Consensus 235 n 235 (251)
|
T Consensus 498 n 498 (498)
T KOG4237|consen 498 N 498 (498)
T ss_pred C
Confidence 4
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.06 E-value=2.7e-10 Score=97.63 Aligned_cols=181 Identities=31% Similarity=0.351 Sum_probs=129.3
Q ss_pred hhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCC-CCcCCceEeecCCCccccccC----
Q 025516 56 NTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSN-HSAEKLMFLEVPNSDIEQLWN---- 130 (251)
Q Consensus 56 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~-~~l~~L~~L~l~~n~i~~l~~---- 130 (251)
..+..++.++.|++.+|.+....+ ...... -.|+.+++.++.+..+|.. ..+++|+.|++++|++.+++.
T Consensus 110 ~~~~~~~~l~~L~l~~n~i~~i~~-~~~~~~----~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~ 184 (394)
T COG4886 110 SELLELTNLTSLDLDNNNITDIPP-LIGLLK----SNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSN 184 (394)
T ss_pred hhhhcccceeEEecCCcccccCcc-ccccch----hhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhh
Confidence 344556778888888887664221 111121 1455555555555666533 368899999999999887654
Q ss_pred cCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc-cCCccEEEccccCCccCCcccccCccCCEEecc
Q 025516 131 SVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLS 209 (251)
Q Consensus 131 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~ 209 (251)
.+.|+.|++++|+ ...+|..++.+..|+++.+++|.......... +..+..+.+.+|++..++..++.+++++.|+++
T Consensus 185 ~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s 263 (394)
T COG4886 185 LSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLS 263 (394)
T ss_pred hhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccc
Confidence 4578889999886 66777766667778999999986444443333 677888888888888878888899999999999
Q ss_pred CCcCCccCcccccCCCCCCEEeccCCcCCCCCChh
Q 025516 210 DCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDR 244 (251)
Q Consensus 210 ~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~ 244 (251)
+|.+... +. ++.+.+++.|++++|.+....|..
T Consensus 264 ~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 264 NNQISSI-SS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred ccccccc-cc-ccccCccCEEeccCccccccchhh
Confidence 9886544 33 889999999999998887766654
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.06 E-value=2.8e-10 Score=85.60 Aligned_cols=118 Identities=30% Similarity=0.238 Sum_probs=44.1
Q ss_pred cCCCcccc---ccCcCCccEEEcCCCcCCccccCccc-cCCCccEEecCCCCCCCCCCccccCCccEEEccccCCccCCc
Q 025516 120 VPNSDIEQ---LWNSVKLVILNLSGSKSLKSLPAGIF-NLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPS 195 (251)
Q Consensus 120 l~~n~i~~---l~~~~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~i~~lp~ 195 (251)
+..+.|+. +.+..+++.|+|++|.+. .+. .++ .+.+|+.|++++|.+.+.-.-..++.|++|++++|.|+.+++
T Consensus 4 lt~~~i~~~~~~~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~ 81 (175)
T PF14580_consen 4 LTANMIEQIAQYNNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISE 81 (175)
T ss_dssp ----------------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CH
T ss_pred ccccccccccccccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCcccc
Confidence 34455544 344557999999998744 443 465 578999999999987654333338999999999999999976
Q ss_pred cc-ccCccCCEEeccCCcCCccC-cccccCCCCCCEEeccCCcCCC
Q 025516 196 SF-ELLLRLWLLDLSDCKRLKSL-PSSLCKLKSLELLSLRGCSNLQ 239 (251)
Q Consensus 196 ~~-~~l~~L~~L~l~~n~~~~~~-p~~~~~l~~L~~L~l~~n~~~~ 239 (251)
.+ ..+++|+.|++++|++...- -..+..+++|+.|++.+|+...
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 55 46999999999999976422 2567889999999999998764
No 31
>PLN03150 hypothetical protein; Provisional
Probab=98.98 E-value=1.2e-09 Score=98.53 Aligned_cols=92 Identities=32% Similarity=0.396 Sum_probs=84.5
Q ss_pred CccEEecCCCCCCCCCCccc--cCCccEEEccccCCc-cCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEecc
Q 025516 157 FLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIE-ELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLR 233 (251)
Q Consensus 157 ~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~ 233 (251)
.++.|++++|.+.+.+|... +++|+.|+|++|.+. .+|..++.+++|+.|++++|++.+.+|..++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37889999999888888754 899999999999998 789899999999999999999999999999999999999999
Q ss_pred CCcCCCCCChhhhhc
Q 025516 234 GCSNLQRLPDRLASY 248 (251)
Q Consensus 234 ~n~~~~~~p~~l~~l 248 (251)
+|++.+.+|..++.+
T Consensus 499 ~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 499 GNSLSGRVPAALGGR 513 (623)
T ss_pred CCcccccCChHHhhc
Confidence 999999999987653
No 32
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.95 E-value=7.1e-10 Score=68.85 Aligned_cols=60 Identities=32% Similarity=0.383 Sum_probs=52.9
Q ss_pred CCccEEEccccCCccCCc-ccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcC
Q 025516 178 GNIGQLFLSGTAIEELPS-SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSN 237 (251)
Q Consensus 178 ~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~ 237 (251)
++|++|++++|+++.+|. .+.++++|+.|++++|.+....|..+.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 468899999999999886 678999999999999998777778899999999999999864
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.86 E-value=3.5e-10 Score=90.05 Aligned_cols=124 Identities=29% Similarity=0.226 Sum_probs=97.8
Q ss_pred CCceEeecCCCcccccc----CcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc-cCCccEEEccc
Q 025516 113 EKLMFLEVPNSDIEQLW----NSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-SGNIGQLFLSG 187 (251)
Q Consensus 113 ~~L~~L~l~~n~i~~l~----~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~~ 187 (251)
..|+++|+++|.|+.+. -.+++++|++++|.+.. +. .+..+.+|+.||+++|.......... +-+.+.|.+++
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~-v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT-VQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceee-eh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 45899999999997554 35689999999987543 32 27778999999999997654443322 67899999999
Q ss_pred cCCccCCcccccCccCCEEeccCCcCCcc-CcccccCCCCCCEEeccCCcCCC
Q 025516 188 TAIEELPSSFELLLRLWLLDLSDCKRLKS-LPSSLCKLKSLELLSLRGCSNLQ 239 (251)
Q Consensus 188 n~i~~lp~~~~~l~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~L~l~~n~~~~ 239 (251)
|.|..+. .++++-+|..||+++|++... -...++++|-|+++.+.+|++.+
T Consensus 362 N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 362 NKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 9887664 678889999999999997643 24789999999999999987764
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.83 E-value=3.7e-09 Score=90.61 Aligned_cols=173 Identities=23% Similarity=0.286 Sum_probs=126.2
Q ss_pred CceEEEEeecCCcccccCCchhhhcCC-CccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCC-CcC
Q 025516 36 EKIEGICLDLSKVKEIPLNPNTFAKMR-KLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH-SAE 113 (251)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l~ 113 (251)
..+..+.+..+.+..+ +.....+. +|+.|++++|.+.... ..+..++.++.+++..|+ +..+|... .+.
T Consensus 116 ~~l~~L~l~~n~i~~i---~~~~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~-----l~~l~~~~~~~~ 186 (394)
T COG4886 116 TNLTSLDLDNNNITDI---PPLIGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFND-----LSDLPKLLSNLS 186 (394)
T ss_pred cceeEEecCCcccccC---ccccccchhhcccccccccchhhhh-hhhhccccccccccCCch-----hhhhhhhhhhhh
Confidence 3455555555555444 33444553 9999999999876421 234555555555555554 45677766 789
Q ss_pred CceEeecCCCccccccC---cC-CccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCC-CCccccCCccEEEcccc
Q 025516 114 KLMFLEVPNSDIEQLWN---SV-KLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKR-LPEISSGNIGQLFLSGT 188 (251)
Q Consensus 114 ~L~~L~l~~n~i~~l~~---~~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~L~~L~l~~n 188 (251)
+|+.+++++|++..++. .. .|++|.+++|. ....+..+.++.++..+.+..|+.... .....++.++.|++++|
T Consensus 187 ~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n 265 (394)
T COG4886 187 NLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN 265 (394)
T ss_pred hhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeeeccchhccccccceeccccc
Confidence 99999999999998876 34 49999999985 445566688888999999888876552 22233678999999999
Q ss_pred CCccCCcccccCccCCEEeccCCcCCccCcc
Q 025516 189 AIEELPSSFELLLRLWLLDLSDCKRLKSLPS 219 (251)
Q Consensus 189 ~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~ 219 (251)
.++.++. ++.+.+++.|++++|.+....|.
T Consensus 266 ~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 266 QISSISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ccccccc-ccccCccCEEeccCccccccchh
Confidence 9999987 88999999999999987655544
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=4.7e-10 Score=93.17 Aligned_cols=174 Identities=16% Similarity=0.081 Sum_probs=121.8
Q ss_pred hcCCCccEEEeecccCCCCCc-cccccCCcceecceeEEeeccCCCCCCCC---CC-CcCCceEeecCCCcccccc----
Q 025516 59 AKMRKLRFLKFYSSSFNGENR-CKVSHLQDLRFAEVKYLHWHGYPLKSLPS---NH-SAEKLMFLEVPNSDIEQLW---- 129 (251)
Q Consensus 59 ~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~l~~l~L~~~~l~~~~~~~~~~---~~-~l~~L~~L~l~~n~i~~l~---- 129 (251)
.++.+|+...+.+........ .....+..++.++|+.|-+. .+-. .. .+++|+.|+++.|.+....
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~-----nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~ 192 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFH-----NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT 192 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHH-----hHHHHHHHHHhcccchhcccccccccCCccccc
Confidence 367888999998887654222 12233444444444444433 3322 12 6899999999999986432
Q ss_pred --CcCCccEEEcCCCcCCccccCcc-ccCCCccEEecCCCCCCC--CCCccccCCccEEEccccCCccCC--cccccCcc
Q 025516 130 --NSVKLVILNLSGSKSLKSLPAGI-FNLEFLTELDLSGCSKLK--RLPEISSGNIGQLFLSGTAIEELP--SSFELLLR 202 (251)
Q Consensus 130 --~~~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~~~~--~~~~~~~~~L~~L~l~~n~i~~lp--~~~~~l~~ 202 (251)
.+.+|+.|.++.|.+....-.++ ..+++|+.|.+.+|.... ..+...++.|++|+|++|.+-.++ ...+.++.
T Consensus 193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPG 272 (505)
T ss_pred hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccc
Confidence 35689999999999776443333 368999999999985332 333344889999999999988777 45789999
Q ss_pred CCEEeccCCcCCccC-ccc-----ccCCCCCCEEeccCCcC
Q 025516 203 LWLLDLSDCKRLKSL-PSS-----LCKLKSLELLSLRGCSN 237 (251)
Q Consensus 203 L~~L~l~~n~~~~~~-p~~-----~~~l~~L~~L~l~~n~~ 237 (251)
|..|.++.|.+.+.. |.. -...++|++|++..|++
T Consensus 273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 999999999876432 332 24578999999999877
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.77 E-value=5.3e-09 Score=83.46 Aligned_cols=106 Identities=25% Similarity=0.101 Sum_probs=85.7
Q ss_pred cCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccccCCccEEEccccCCccCCcccccCccCCEEec
Q 025516 129 WNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDL 208 (251)
Q Consensus 129 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l 208 (251)
+..+.|+.+|+++|. ...+..++.-.+.++.|+++.|++...-.-..+++|+.|++++|.++++.-+--++.+.+.|.+
T Consensus 281 dTWq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 281 DTWQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred chHhhhhhccccccc-hhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 334489999999986 6667777777889999999999877655544589999999999999877655567889999999
Q ss_pred cCCcCCccCcccccCCCCCCEEeccCCcC
Q 025516 209 SDCKRLKSLPSSLCKLKSLELLSLRGCSN 237 (251)
Q Consensus 209 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~ 237 (251)
++|.+-. + .+++++.+|..||+.+|++
T Consensus 360 a~N~iE~-L-SGL~KLYSLvnLDl~~N~I 386 (490)
T KOG1259|consen 360 AQNKIET-L-SGLRKLYSLVNLDLSSNQI 386 (490)
T ss_pred hhhhHhh-h-hhhHhhhhheeccccccch
Confidence 9988533 2 5688999999999999865
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.55 E-value=8.1e-08 Score=59.47 Aligned_cols=28 Identities=36% Similarity=0.552 Sum_probs=14.4
Q ss_pred ccccCCccCCc-ccccCccCCEEeccCCc
Q 025516 185 LSGTAIEELPS-SFELLLRLWLLDLSDCK 212 (251)
Q Consensus 185 l~~n~i~~lp~-~~~~l~~L~~L~l~~n~ 212 (251)
+++|.++.+++ .+.++++|+.|++++|+
T Consensus 32 l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 32 LSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp ETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred ccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 33344444433 34566666666666654
No 38
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.54 E-value=4e-07 Score=76.91 Aligned_cols=56 Identities=20% Similarity=0.261 Sum_probs=29.8
Q ss_pred eeEEeeccCCCCCCCCCCCcCCceEeecCC-CccccccC--cCCccEEEcCCCcCCccccC
Q 025516 93 VKYLHWHGYPLKSLPSNHSAEKLMFLEVPN-SDIEQLWN--SVKLVILNLSGSKSLKSLPA 150 (251)
Q Consensus 93 L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~-n~i~~l~~--~~~L~~L~l~~n~~~~~~~~ 150 (251)
++.++++++.+..+|. -..+|++|.+++ +.+..++. ..+|++|++++|.....+|.
T Consensus 54 l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 54 SGRLYIKDCDIESLPV--LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred CCEEEeCCCCCcccCC--CCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccccccc
Confidence 4455555555666662 234577777665 33333332 23577777777644444443
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.52 E-value=8.2e-09 Score=83.62 Aligned_cols=182 Identities=19% Similarity=0.139 Sum_probs=111.9
Q ss_pred hhhhcCCCccEEEeecccCCCCCcccc----ccCCcceecceeEEeeccCCCCCCCC----------CCCcCCceEeecC
Q 025516 56 NTFAKMRKLRFLKFYSSSFNGENRCKV----SHLQDLRFAEVKYLHWHGYPLKSLPS----------NHSAEKLMFLEVP 121 (251)
Q Consensus 56 ~~~~~l~~L~~L~l~~n~~~~~~~~~l----~~l~~l~~l~L~~~~l~~~~~~~~~~----------~~~l~~L~~L~l~ 121 (251)
+++-++++|++++||+|.|....+..| .++..|+.+.|.+|.+.--.-+.+.. .-..+.|+.+..+
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 345567788888888887765444433 33455555666555544211111111 0134677888888
Q ss_pred CCcccc---------ccCcCCccEEEcCCCcCCcc----ccCccccCCCccEEecCCCCCCCCCC----cc--ccCCccE
Q 025516 122 NSDIEQ---------LWNSVKLVILNLSGSKSLKS----LPAGIFNLEFLTELDLSGCSKLKRLP----EI--SSGNIGQ 182 (251)
Q Consensus 122 ~n~i~~---------l~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~----~~--~~~~L~~ 182 (251)
+|.+.. +...+.|+.+.+..|.+-.. +...+..+++|+.||+.+|-+...-. .. .++.|++
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 887642 23345777887777653322 12334567888888888886654221 11 1567888
Q ss_pred EEccccCCc-----cCCccc-ccCccCCEEeccCCcCCcc----CcccccCCCCCCEEeccCCcC
Q 025516 183 LFLSGTAIE-----ELPSSF-ELLLRLWLLDLSDCKRLKS----LPSSLCKLKSLELLSLRGCSN 237 (251)
Q Consensus 183 L~l~~n~i~-----~lp~~~-~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~~ 237 (251)
+++++|.++ .+-..+ ...|.|+.|.+.+|.+... +...+...+.|..|++++|.+
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 999888876 122333 3578889999999887743 223456678899999998766
No 40
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.47 E-value=1.1e-08 Score=82.96 Aligned_cols=158 Identities=18% Similarity=0.156 Sum_probs=113.9
Q ss_pred hhhhcCCCccEEEeecccCCCCCcccc-------------ccCCcceecceeEEeeccCCCCCCCCCC-CcCCceEeecC
Q 025516 56 NTFAKMRKLRFLKFYSSSFNGENRCKV-------------SHLQDLRFAEVKYLHWHGYPLKSLPSNH-SAEKLMFLEVP 121 (251)
Q Consensus 56 ~~~~~l~~L~~L~l~~n~~~~~~~~~l-------------~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l~~L~~L~l~ 121 (251)
.-+..+..|+.|++.+|.+.......+ +....|+++....|++.+.+...+...+ ..+.|+.+.+.
T Consensus 114 ~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~ 193 (382)
T KOG1909|consen 114 ELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLS 193 (382)
T ss_pred HHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEe
Confidence 345578999999999999775443332 3344555666666666655444444444 35789999999
Q ss_pred CCccc---------cccCcCCccEEEcCCCcCCcc----ccCccccCCCccEEecCCCCCCCCCCc-------cccCCcc
Q 025516 122 NSDIE---------QLWNSVKLVILNLSGSKSLKS----LPAGIFNLEFLTELDLSGCSKLKRLPE-------ISSGNIG 181 (251)
Q Consensus 122 ~n~i~---------~l~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~-------~~~~~L~ 181 (251)
.|.|. .+..+++|++|||+.|.+... +...+..+++|++|.+++|.....-.. -..+.|+
T Consensus 194 qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~ 273 (382)
T KOG1909|consen 194 QNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLE 273 (382)
T ss_pred cccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCc
Confidence 99884 356788999999999987753 334456688999999999975542111 1178999
Q ss_pred EEEccccCCcc-----CCcccccCccCCEEeccCCcC
Q 025516 182 QLFLSGTAIEE-----LPSSFELLLRLWLLDLSDCKR 213 (251)
Q Consensus 182 ~L~l~~n~i~~-----lp~~~~~l~~L~~L~l~~n~~ 213 (251)
.|.+.+|.|+. +...+...+.|..|+|++|.+
T Consensus 274 vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 274 VLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred eeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 99999999982 333455689999999999997
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.38 E-value=3.3e-07 Score=85.23 Aligned_cols=130 Identities=33% Similarity=0.397 Sum_probs=85.9
Q ss_pred CCCCCCcCCceEeecCCCccccc---cCcCCccEEEcCCCcC-CccccC-ccccCCCccEEecCCCCCCCCCCccc--cC
Q 025516 106 LPSNHSAEKLMFLEVPNSDIEQL---WNSVKLVILNLSGSKS-LKSLPA-GIFNLEFLTELDLSGCSKLKRLPEIS--SG 178 (251)
Q Consensus 106 ~~~~~~l~~L~~L~l~~n~i~~l---~~~~~L~~L~l~~n~~-~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~--~~ 178 (251)
.|........+.+.+-+|.+..+ ...++|+.|-+..|.. ...++. .|..++.|+.||+++|...+.+|..+ +-
T Consensus 516 ~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li 595 (889)
T KOG4658|consen 516 IPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV 595 (889)
T ss_pred cccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh
Confidence 33333344455555555555432 2334577777766642 233333 24457777777777777777777655 67
Q ss_pred CccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCC
Q 025516 179 NIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGC 235 (251)
Q Consensus 179 ~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n 235 (251)
+|+.|++++..++.+|..+++++.|.+|++..+.....+|.....+++|++|.+..-
T Consensus 596 ~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 596 HLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred hhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 777888888888888888888888888888887766666776677888888877653
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.33 E-value=9.2e-08 Score=82.53 Aligned_cols=105 Identities=22% Similarity=0.245 Sum_probs=56.8
Q ss_pred hhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCcccccc---CcCCc
Q 025516 58 FAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLW---NSVKL 134 (251)
Q Consensus 58 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~l~---~~~~L 134 (251)
+..+.+|..+++.+|.+...... +..+.+|+.++ ++++.++.+...-.+..|+.|++++|.|..+. .+..|
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~-----ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L 164 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLD-----LSFNKITKLEGLSTLTLLKELNLSGNLISDISGLESLKSL 164 (414)
T ss_pred cccccceeeeeccccchhhcccc-hhhhhcchhee-----ccccccccccchhhccchhhheeccCcchhccCCccchhh
Confidence 45667777777777766542211 22233333333 33333334444334556777777777776443 34567
Q ss_pred cEEEcCCCcCCcccc-CccccCCCccEEecCCCCCC
Q 025516 135 VILNLSGSKSLKSLP-AGIFNLEFLTELDLSGCSKL 169 (251)
Q Consensus 135 ~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~ 169 (251)
+.+++++|.+...-+ . ...+.+++.+.+.+|.+.
T Consensus 165 ~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred hcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 777777766443322 1 345666666666666543
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.28 E-value=8.2e-07 Score=50.83 Aligned_cols=36 Identities=33% Similarity=0.372 Sum_probs=25.0
Q ss_pred CccEEEccccCCccCCcccccCccCCEEeccCCcCC
Q 025516 179 NIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRL 214 (251)
Q Consensus 179 ~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~ 214 (251)
+|++|++++|+|+++|..+++|++|+.|++++|++.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 567777777777777766777777777777777754
No 44
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.28 E-value=4.1e-08 Score=69.64 Aligned_cols=107 Identities=21% Similarity=0.215 Sum_probs=70.8
Q ss_pred ccEEEcCCCcCCcccc---CccccCCCccEEecCCCCCCCCCCccc---cCCccEEEccccCCccCCcccccCccCCEEe
Q 025516 134 LVILNLSGSKSLKSLP---AGIFNLEFLTELDLSGCSKLKRLPEIS---SGNIGQLFLSGTAIEELPSSFELLLRLWLLD 207 (251)
Q Consensus 134 L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~l~~n~~~~~~~~~~---~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~ 207 (251)
+-.++|+.|. ...++ ..+.+...|+..++++|.+ +.+|..+ ++..+.|++++|.|+++|.++..++.|+.|+
T Consensus 29 ~h~ldLssc~-lm~i~davy~l~~~~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQ-LMYIADAVYMLSKGYELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccch-hhHHHHHHHHHhCCceEEEEecccchh-hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 4456666665 33333 3344455667777777764 3344322 5678888888888888888888888888888
Q ss_pred ccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChh
Q 025516 208 LSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDR 244 (251)
Q Consensus 208 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~ 244 (251)
++.|++ ...|..+..+.++..|+..+|.. .++|.+
T Consensus 107 l~~N~l-~~~p~vi~~L~~l~~Lds~~na~-~eid~d 141 (177)
T KOG4579|consen 107 LRFNPL-NAEPRVIAPLIKLDMLDSPENAR-AEIDVD 141 (177)
T ss_pred cccCcc-ccchHHHHHHHhHHHhcCCCCcc-ccCcHH
Confidence 888884 44566666677888887777543 355543
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.26 E-value=2.1e-07 Score=80.28 Aligned_cols=101 Identities=30% Similarity=0.274 Sum_probs=55.1
Q ss_pred CcCCceEeecCCCcccccc----CcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccccCCccEEEcc
Q 025516 111 SAEKLMFLEVPNSDIEQLW----NSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLS 186 (251)
Q Consensus 111 ~l~~L~~L~l~~n~i~~l~----~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~ 186 (251)
.+.+|..+++..|+|..+. .+++|++|++++|.+.. +. .+..++.|+.|++++|.+...-.-..+..|+.++++
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~-i~-~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITK-LE-GLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLS 170 (414)
T ss_pred cccceeeeeccccchhhcccchhhhhcchheecccccccc-cc-chhhccchhhheeccCcchhccCCccchhhhcccCC
Confidence 4566666666666665433 35566666666665332 22 133455566666666654332222225566666666
Q ss_pred ccCCccCCcc-cccCccCCEEeccCCcC
Q 025516 187 GTAIEELPSS-FELLLRLWLLDLSDCKR 213 (251)
Q Consensus 187 ~n~i~~lp~~-~~~l~~L~~L~l~~n~~ 213 (251)
+|.+..++.. ...+.+++.+++++|.+
T Consensus 171 ~n~i~~ie~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 171 YNRIVDIENDELSELISLEELDLGGNSI 198 (414)
T ss_pred cchhhhhhhhhhhhccchHHHhccCCch
Confidence 6666655442 34555666666666554
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.22 E-value=2.8e-08 Score=87.75 Aligned_cols=120 Identities=31% Similarity=0.252 Sum_probs=71.3
Q ss_pred CceEeecCCCccc----cccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccc
Q 025516 114 KLMFLEVPNSDIE----QLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSG 187 (251)
Q Consensus 114 ~L~~L~l~~n~i~----~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~ 187 (251)
.|...++++|.+. .+--++.|+.|+|++|++...- .+..++.|.+||+++|. +..+|... -..|..|.+.+
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccch-hccccccchhhhhheeeeecc
Confidence 3455556666553 2333456777777777644322 45567777777777775 34444433 23377777777
Q ss_pred cCCccCCcccccCccCCEEeccCCcCCccCc-ccccCCCCCCEEeccCCcC
Q 025516 188 TAIEELPSSFELLLRLWLLDLSDCKRLKSLP-SSLCKLKSLELLSLRGCSN 237 (251)
Q Consensus 188 n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~L~l~~n~~ 237 (251)
|.++.+- .+.++++|+.||+++|-+.+--- .-+..+.+|+.|++.+|++
T Consensus 242 N~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 242 NALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cHHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 7766554 45567777777777776542211 2245566677777777654
No 47
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.20 E-value=3.7e-06 Score=71.15 Aligned_cols=115 Identities=28% Similarity=0.416 Sum_probs=81.6
Q ss_pred cCCceEeecCCCccccccCcC-CccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccccCCccEEEccccCC
Q 025516 112 AEKLMFLEVPNSDIEQLWNSV-KLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAI 190 (251)
Q Consensus 112 l~~L~~L~l~~n~i~~l~~~~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~i 190 (251)
+.++..|++++|.+..++.++ +|+.|.+++|.....+|..+ ..+|+.|++++|..+..+| .+|+.|+++++..
T Consensus 51 ~~~l~~L~Is~c~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP----~sLe~L~L~~n~~ 124 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPVLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP----ESVRSLEIKGSAT 124 (426)
T ss_pred hcCCCEEEeCCCCCcccCCCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc----cccceEEeCCCCC
Confidence 578999999999999998776 59999999988777778755 4689999999996555554 4678888877653
Q ss_pred ---ccCCcccccC------------------ccCCEEeccCCcCCccCcccccCCCCCCEEeccCC
Q 025516 191 ---EELPSSFELL------------------LRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGC 235 (251)
Q Consensus 191 ---~~lp~~~~~l------------------~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n 235 (251)
..+|..+..+ ++|+.|++++|... .+|..+. .+|++|.++.+
T Consensus 125 ~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 125 DSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred cccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 4566544322 35677777776643 2333222 46777777664
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.09 E-value=3.3e-08 Score=87.32 Aligned_cols=100 Identities=21% Similarity=0.119 Sum_probs=77.7
Q ss_pred cCCceEeecCCCccc---cccCcCCccEEEcCCCcCCccccC-ccccCCCccEEecCCCCCCCCCCccccCCccEEEccc
Q 025516 112 AEKLMFLEVPNSDIE---QLWNSVKLVILNLSGSKSLKSLPA-GIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSG 187 (251)
Q Consensus 112 l~~L~~L~l~~n~i~---~l~~~~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~ 187 (251)
++.+++|++++|++. .+..+++|+.|||++|. +..+|. +..++. |..|.+++|...+-..-..+.+|+.|++++
T Consensus 186 l~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN~l~tL~gie~LksL~~LDlsy 263 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNNALTTLRGIENLKSLYGLDLSY 263 (1096)
T ss_pred HHHhhhhccchhhhhhhHHHHhcccccccccccch-hccccccchhhhh-heeeeecccHHHhhhhHHhhhhhhccchhH
Confidence 577999999999986 46778899999999987 555554 222444 999999999866555545589999999999
Q ss_pred cCCccCCc--ccccCccCCEEeccCCcC
Q 025516 188 TAIEELPS--SFELLLRLWLLDLSDCKR 213 (251)
Q Consensus 188 n~i~~lp~--~~~~l~~L~~L~l~~n~~ 213 (251)
|-+.+..+ .++.+..|+.|+|.+|++
T Consensus 264 Nll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 264 NLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 98874332 356788999999999985
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=6.8e-08 Score=77.09 Aligned_cols=169 Identities=23% Similarity=0.253 Sum_probs=110.6
Q ss_pred CCccEEEeecccCCCCC-ccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCC-ccc------cccCcCC
Q 025516 62 RKLRFLKFYSSSFNGEN-RCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNS-DIE------QLWNSVK 133 (251)
Q Consensus 62 ~~L~~L~l~~n~~~~~~-~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n-~i~------~l~~~~~ 133 (251)
+.|++++++...++... ..-+..+..++.+.++.+.+++.-...++ .-.+|+.++++.+ +++ -+..+..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iA---kN~~L~~lnlsm~sG~t~n~~~ll~~scs~ 261 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIA---KNSNLVRLNLSMCSGFTENALQLLLSSCSR 261 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHh---ccccceeeccccccccchhHHHHHHHhhhh
Confidence 46899999987766421 12235567777888888888763222222 3467888888765 333 2456778
Q ss_pred ccEEEcCCCcCCccccCc-ccc-CCCccEEecCCCCCCC---CCCccc--cCCccEEEccccCC-c-cCCcccccCccCC
Q 025516 134 LVILNLSGSKSLKSLPAG-IFN-LEFLTELDLSGCSKLK---RLPEIS--SGNIGQLFLSGTAI-E-ELPSSFELLLRLW 204 (251)
Q Consensus 134 L~~L~l~~n~~~~~~~~~-~~~-l~~L~~L~l~~n~~~~---~~~~~~--~~~L~~L~l~~n~i-~-~lp~~~~~l~~L~ 204 (251)
|..|+++.|......... +.. =.+|+.|++++++..- .+.... +++|.+|+|++|.. + ..-..+.+++.|+
T Consensus 262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 999999888655432211 111 2468888898875432 122122 88999999998753 3 3334577899999
Q ss_pred EEeccCCcCCccCcc---cccCCCCCCEEeccCC
Q 025516 205 LLDLSDCKRLKSLPS---SLCKLKSLELLSLRGC 235 (251)
Q Consensus 205 ~L~l~~n~~~~~~p~---~~~~l~~L~~L~l~~n 235 (251)
+|.++.|. +.+|. .+...|+|.+|++.+|
T Consensus 342 ~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 342 HLSLSRCY--DIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeehhhhc--CCChHHeeeeccCcceEEEEeccc
Confidence 99999887 34454 4578899999998875
No 50
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.4e-07 Score=75.34 Aligned_cols=131 Identities=28% Similarity=0.279 Sum_probs=83.5
Q ss_pred cCCceEeecCCCccc-----cccCcCCccEEEcCCCcCCccc--cCccccCCCccEEecCCCCCCCCCCc----cccCCc
Q 025516 112 AEKLMFLEVPNSDIE-----QLWNSVKLVILNLSGSKSLKSL--PAGIFNLEFLTELDLSGCSKLKRLPE----ISSGNI 180 (251)
Q Consensus 112 l~~L~~L~l~~n~i~-----~l~~~~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~L 180 (251)
+..|+-+.+.++++. .+..-.+|+.|++++|.-.... .--+.+++.|.+|++++|...+..-. ..-++|
T Consensus 209 C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l 288 (419)
T KOG2120|consen 209 CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETL 288 (419)
T ss_pred HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhh
Confidence 345555555555553 3445557778887776433221 11234677788888888866554322 125678
Q ss_pred cEEEccccC----CccCCcccccCccCCEEeccCCcCCcc-CcccccCCCCCCEEeccCCcCCCCCChh
Q 025516 181 GQLFLSGTA----IEELPSSFELLLRLWLLDLSDCKRLKS-LPSSLCKLKSLELLSLRGCSNLQRLPDR 244 (251)
Q Consensus 181 ~~L~l~~n~----i~~lp~~~~~l~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~L~l~~n~~~~~~p~~ 244 (251)
+.|+++|+. .+.+..-...+|+|..||+++|.-++. ....+-+++.|++|.++.|- +.+|..
T Consensus 289 ~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~ 355 (419)
T KOG2120|consen 289 TQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPET 355 (419)
T ss_pred hhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc--CCChHH
Confidence 888888873 223443456899999999999875543 34567889999999999983 334443
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=2.1e-06 Score=68.80 Aligned_cols=169 Identities=14% Similarity=0.137 Sum_probs=100.1
Q ss_pred cCCCccEEEeecccCCCCC--ccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCccc------cccCc
Q 025516 60 KMRKLRFLKFYSSSFNGEN--RCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIE------QLWNS 131 (251)
Q Consensus 60 ~l~~L~~L~l~~n~~~~~~--~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~------~l~~~ 131 (251)
.++.++.+++.+|.++... ..-+.++++++.++++.|.+.. .++.+| ..+.+|+.+-+.++.++ .+..+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s-~I~~lp--~p~~nl~~lVLNgT~L~w~~~~s~l~~l 145 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSS-DIKSLP--LPLKNLRVLVLNGTGLSWTQSTSSLDDL 145 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCC-ccccCc--ccccceEEEEEcCCCCChhhhhhhhhcc
Confidence 4677777777777766421 1223456666666666665543 233333 24567777777776664 24455
Q ss_pred CCccEEEcCCCcCCcc---------c-c------------------Cccc-cCCCccEEecCCCCCCCCCCc---cccCC
Q 025516 132 VKLVILNLSGSKSLKS---------L-P------------------AGIF-NLEFLTELDLSGCSKLKRLPE---ISSGN 179 (251)
Q Consensus 132 ~~L~~L~l~~n~~~~~---------~-~------------------~~~~-~l~~L~~L~l~~n~~~~~~~~---~~~~~ 179 (251)
+.++.|.++.|.+... . | ..++ .++++..+.++.|++-+.... ..++.
T Consensus 146 P~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~ 225 (418)
T KOG2982|consen 146 PKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPS 225 (418)
T ss_pred hhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCc
Confidence 5566666665521110 0 0 0011 245666677777754432222 12667
Q ss_pred ccEEEccccCCccCCc--ccccCccCCEEeccCCcCCccCcc------cccCCCCCCEEe
Q 025516 180 IGQLFLSGTAIEELPS--SFELLLRLWLLDLSDCKRLKSLPS------SLCKLKSLELLS 231 (251)
Q Consensus 180 L~~L~l~~n~i~~lp~--~~~~l~~L~~L~l~~n~~~~~~p~------~~~~l~~L~~L~ 231 (251)
+--|+|+.++|..+.+ .+.+++.|+.|.++++++...+-. .++.+++++.|+
T Consensus 226 ~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 226 LSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred chhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 7788899999887653 678899999999999987654322 357778877774
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.93 E-value=2.4e-05 Score=59.29 Aligned_cols=98 Identities=20% Similarity=0.220 Sum_probs=69.1
Q ss_pred cCCceEeecCCCccc---cccCcCCccEEEcCCCcCCccccCccc-cCCCccEEecCCCCCC--CCCCccc-cCCccEEE
Q 025516 112 AEKLMFLEVPNSDIE---QLWNSVKLVILNLSGSKSLKSLPAGIF-NLEFLTELDLSGCSKL--KRLPEIS-SGNIGQLF 184 (251)
Q Consensus 112 l~~L~~L~l~~n~i~---~l~~~~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~~~--~~~~~~~-~~~L~~L~ 184 (251)
+.+...+++++|.+. .++.+..|..|.+.+|++...-|. ++ .+++|..|.+++|.+- +++.... ++.|++|.
T Consensus 41 ~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~-L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPD-LDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccccceecccccchhhcccCCCccccceEEecCCcceeeccc-hhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 466778888888875 566677888888988875544444 44 4677888888888643 2333322 78888888
Q ss_pred ccccCCccCCc----ccccCccCCEEeccC
Q 025516 185 LSGTAIEELPS----SFELLLRLWLLDLSD 210 (251)
Q Consensus 185 l~~n~i~~lp~----~~~~l~~L~~L~l~~ 210 (251)
+-+|.++.-+. -+..+|+|+.||...
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 88888875442 357888888888765
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.89 E-value=1.6e-05 Score=45.41 Aligned_cols=37 Identities=35% Similarity=0.355 Sum_probs=30.9
Q ss_pred ccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCC
Q 025516 201 LRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNL 238 (251)
Q Consensus 201 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~ 238 (251)
++|+.|++++|++. .+|..+++|++|++|++++|++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 57999999999976 56777999999999999998765
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.79 E-value=1.2e-06 Score=62.29 Aligned_cols=118 Identities=19% Similarity=0.215 Sum_probs=63.4
Q ss_pred ccCcCCccEEEcCCCcCCccccCccc-cCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCcccccCccCC
Q 025516 128 LWNSVKLVILNLSGSKSLKSLPAGIF-NLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPSSFELLLRLW 204 (251)
Q Consensus 128 l~~~~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~~~~~l~~L~ 204 (251)
+.....|...++++|. ....|..+. .++.+++|++++|.+ .++|.-. ++.|+.|+++.|.+...|.-+..+.++-
T Consensus 49 l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~nei-sdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNEI-SDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLD 126 (177)
T ss_pred HhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchhhh-hhchHHHhhhHHhhhcccccCccccchHHHHHHHhHH
Confidence 3444556666666665 334444444 344666666666653 3444322 6667777777777776666555566666
Q ss_pred EEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhc
Q 025516 205 LLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASY 248 (251)
Q Consensus 205 ~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l 248 (251)
.|+.-+|.. ..+|-++-.-++.-..++.+++..++-|..++.+
T Consensus 127 ~Lds~~na~-~eid~dl~~s~~~al~~lgnepl~~~~~~klqa~ 169 (177)
T KOG4579|consen 127 MLDSPENAR-AEIDVDLFYSSLPALIKLGNEPLGDETKKKLQAL 169 (177)
T ss_pred HhcCCCCcc-ccCcHHHhccccHHHHHhcCCcccccCccccccc
Confidence 666665553 3344333222223333445555555555555443
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.65 E-value=0.00013 Score=55.40 Aligned_cols=78 Identities=15% Similarity=0.020 Sum_probs=39.3
Q ss_pred CcCCceEeecCCCccccccC-----cCCccEEEcCCCcCCccc-cCccccCCCccEEecCCCCCCCCCCc-----cccCC
Q 025516 111 SAEKLMFLEVPNSDIEQLWN-----SVKLVILNLSGSKSLKSL-PAGIFNLEFLTELDLSGCSKLKRLPE-----ISSGN 179 (251)
Q Consensus 111 ~l~~L~~L~l~~n~i~~l~~-----~~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~-----~~~~~ 179 (251)
.+..|.+|.++.|.|..+.+ +++|..|.+.+|.+.... -+-+..+++|++|.+-+|+....-.- ..+++
T Consensus 62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~ 141 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPS 141 (233)
T ss_pred CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCc
Confidence 55666666666666654432 334666666665433211 11234456666666666654332110 11556
Q ss_pred ccEEEcccc
Q 025516 180 IGQLFLSGT 188 (251)
Q Consensus 180 L~~L~l~~n 188 (251)
|+.|++..-
T Consensus 142 l~~LDF~kV 150 (233)
T KOG1644|consen 142 LRTLDFQKV 150 (233)
T ss_pred ceEeehhhh
Confidence 666665543
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.60 E-value=7.7e-06 Score=74.45 Aligned_cols=81 Identities=22% Similarity=0.193 Sum_probs=47.2
Q ss_pred CcCCceEeecCCCccc---cccCcCCccEEEcCCCcCCc-cccCccccCCCccEEecCCCCCCCCC--C------ccccC
Q 025516 111 SAEKLMFLEVPNSDIE---QLWNSVKLVILNLSGSKSLK-SLPAGIFNLEFLTELDLSGCSKLKRL--P------EISSG 178 (251)
Q Consensus 111 ~l~~L~~L~l~~n~i~---~l~~~~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~--~------~~~~~ 178 (251)
++++|..||+++++++ +++.+++|++|.+.+=.+.. ..-..+..|++|+.||+|..+..... . ...+|
T Consensus 171 sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lp 250 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLP 250 (699)
T ss_pred ccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCc
Confidence 4677788888887776 45566677777766433221 11123556778888888775443321 1 01156
Q ss_pred CccEEEccccCCc
Q 025516 179 NIGQLFLSGTAIE 191 (251)
Q Consensus 179 ~L~~L~l~~n~i~ 191 (251)
.|+.||.++..+.
T Consensus 251 eLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 251 ELRFLDCSGTDIN 263 (699)
T ss_pred cccEEecCCcchh
Confidence 6666666665554
No 57
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=4.7e-06 Score=66.19 Aligned_cols=99 Identities=21% Similarity=0.116 Sum_probs=69.5
Q ss_pred CCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccccCCccEEEccccCCccCCc--ccccCccCCEEecc
Q 025516 132 VKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPS--SFELLLRLWLLDLS 209 (251)
Q Consensus 132 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~i~~lp~--~~~~l~~L~~L~l~ 209 (251)
.+.+.|+.++|.+. .+. -+.+++.|+.|.++-|.+.+-.|-.-|+.|++|+|..|.|..+.+ .+.++|+|+.|+|.
T Consensus 19 ~~vkKLNcwg~~L~-DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLD-DIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHhhhhcccCCCcc-HHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 34566677766532 221 123566777888887776555554447888888888888887654 46799999999999
Q ss_pred CCcCCccCcc-----cccCCCCCCEEec
Q 025516 210 DCKRLKSLPS-----SLCKLKSLELLSL 232 (251)
Q Consensus 210 ~n~~~~~~p~-----~~~~l~~L~~L~l 232 (251)
.|+-.+.-+. .+..+|+|++||=
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhccC
Confidence 9987766553 4677899998863
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.40 E-value=5.4e-05 Score=69.03 Aligned_cols=127 Identities=20% Similarity=0.133 Sum_probs=83.0
Q ss_pred CCceEeecCCCccc--cc-----cCcCCccEEEcCCCcCCcc-ccCccccCCCccEEecCCCCCCCCCCccccCCccEEE
Q 025516 113 EKLMFLEVPNSDIE--QL-----WNSVKLVILNLSGSKSLKS-LPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLF 184 (251)
Q Consensus 113 ~~L~~L~l~~n~i~--~l-----~~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~ 184 (251)
.+|++|++++...- ++ ..+|+|+.|.+++-.+... ...-..++++|+.||+|+..+..-..-..+++|+.|-
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 67899998886542 22 2467889998887433222 1222346889999999998654443333378888888
Q ss_pred ccccCCccCC--cccccCccCCEEeccCCcCCccC--c----ccccCCCCCCEEeccCCcCCC
Q 025516 185 LSGTAIEELP--SSFELLLRLWLLDLSDCKRLKSL--P----SSLCKLKSLELLSLRGCSNLQ 239 (251)
Q Consensus 185 l~~n~i~~lp--~~~~~l~~L~~L~l~~n~~~~~~--p----~~~~~l~~L~~L~l~~n~~~~ 239 (251)
+.+=.+.... ..+.++++|++||+|.-...... . +.-..+|+|+.||.++....+
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 7776555333 24678999999999987643322 1 123458899999999765544
No 59
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.31 E-value=0.00017 Score=57.40 Aligned_cols=102 Identities=17% Similarity=0.179 Sum_probs=50.4
Q ss_pred cchHHHHHhccCCCceEEEEeecCCccc--ccCCchhhhcCCCccEEEeecccCCCCCc-----------cccccCCcce
Q 025516 23 PDVVYEELSSKGTEKIEGICLDLSKVKE--IPLNPNTFAKMRKLRFLKFYSSSFNGENR-----------CKVSHLQDLR 89 (251)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-----------~~l~~l~~l~ 89 (251)
.+...+.........+..+.++.+.+++ .....+.+++-++|+..+++.- |++... .++.++++++
T Consensus 17 eDvk~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~ 95 (388)
T COG5238 17 EDVKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQ 95 (388)
T ss_pred chhhHHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcce
Confidence 3444444444445666677777766643 2333456666777777777754 333221 1223344444
Q ss_pred ecceeEEeeccCCCCCCCCCC-CcCCceEeecCCCcc
Q 025516 90 FAEVKYLHWHGYPLKSLPSNH-SAEKLMFLEVPNSDI 125 (251)
Q Consensus 90 ~l~L~~~~l~~~~~~~~~~~~-~l~~L~~L~l~~n~i 125 (251)
..+|+.|-+....+..+...+ ..+.|.+|.+++|++
T Consensus 96 ~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 96 KVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred eeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 444444444331111111111 345666666666655
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.93 E-value=0.00075 Score=53.27 Aligned_cols=102 Identities=25% Similarity=0.232 Sum_probs=66.1
Q ss_pred cCCccEEEcCCCcCCccccCccccCCCccEEecCCC--CCCCCCCccc--cCCccEEEccccCCccCC--cccccCccCC
Q 025516 131 SVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGC--SKLKRLPEIS--SGNIGQLFLSGTAIEELP--SSFELLLRLW 204 (251)
Q Consensus 131 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n--~~~~~~~~~~--~~~L~~L~l~~n~i~~lp--~~~~~l~~L~ 204 (251)
+..|+.|++.++..+.. ..+-.+++|+.|.++.| +....+.... +++|+.+++++|++..+. ..+..+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 44677777776553321 22445788999999998 4434333322 689999999999887432 1345777888
Q ss_pred EEeccCCcCCccC---cccccCCCCCCEEeccC
Q 025516 205 LLDLSDCKRLKSL---PSSLCKLKSLELLSLRG 234 (251)
Q Consensus 205 ~L~l~~n~~~~~~---p~~~~~l~~L~~L~l~~ 234 (251)
.|++.+|.....- -..+.-+++|.+|+-..
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 8888888755421 12456678888886654
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.92 E-value=0.00061 Score=53.75 Aligned_cols=96 Identities=27% Similarity=0.193 Sum_probs=53.7
Q ss_pred CCceEeecCCCcc---ccccCcCCccEEEcCCCc--CCccccCccccCCCccEEecCCCCCC--CCCCccc-cCCccEEE
Q 025516 113 EKLMFLEVPNSDI---EQLWNSVKLVILNLSGSK--SLKSLPAGIFNLEFLTELDLSGCSKL--KRLPEIS-SGNIGQLF 184 (251)
Q Consensus 113 ~~L~~L~l~~n~i---~~l~~~~~L~~L~l~~n~--~~~~~~~~~~~l~~L~~L~l~~n~~~--~~~~~~~-~~~L~~L~ 184 (251)
..|+.+.+.+..+ ..++.+++|+.|.++.|+ ..+.++.....+++|+++++++|++. ++++... +.+|..|+
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ld 122 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLD 122 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhh
Confidence 4444444444443 345666677777777773 22333333334577777777777643 2333333 66677777
Q ss_pred ccccCCccCCc----ccccCccCCEEec
Q 025516 185 LSGTAIEELPS----SFELLLRLWLLDL 208 (251)
Q Consensus 185 l~~n~i~~lp~----~~~~l~~L~~L~l 208 (251)
+..|..+.+-. .+.-+++|+.|+-
T Consensus 123 l~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 123 LFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred cccCCccccccHHHHHHHHhhhhccccc
Confidence 77776664432 2445666776653
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.77 E-value=0.00016 Score=57.54 Aligned_cols=181 Identities=15% Similarity=0.086 Sum_probs=89.1
Q ss_pred chhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCC---------------CCcCCceEee
Q 025516 55 PNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSN---------------HSAEKLMFLE 119 (251)
Q Consensus 55 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~---------------~~l~~L~~L~ 119 (251)
-+++.+|++|+..++|.|.|....+..+...-+ ...++.++.+++|.++.+... ..-+.|+...
T Consensus 85 l~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is-~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vi 163 (388)
T COG5238 85 LKALLKCPRLQKVDLSDNAFGSEFPEELGDLIS-SSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVI 163 (388)
T ss_pred HHHHhcCCcceeeeccccccCcccchHHHHHHh-cCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEE
Confidence 446667888888888888877554443321100 022333333343333333221 1235677777
Q ss_pred cCCCccccccC---------cCCccEEEcCCCcCCccc-----cCccccCCCccEEecCCCCCCCCCC----ccc--cCC
Q 025516 120 VPNSDIEQLWN---------SVKLVILNLSGSKSLKSL-----PAGIFNLEFLTELDLSGCSKLKRLP----EIS--SGN 179 (251)
Q Consensus 120 l~~n~i~~l~~---------~~~L~~L~l~~n~~~~~~-----~~~~~~l~~L~~L~l~~n~~~~~~~----~~~--~~~ 179 (251)
+..|++...+. -..|+.+.+..|.+-... -..+..+.+|+.||+..|-++..-. ... .+.
T Consensus 164 cgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~ 243 (388)
T COG5238 164 CGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL 243 (388)
T ss_pred eccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence 77777643221 125666666665533221 1122345667777777765443211 111 234
Q ss_pred ccEEEccccCCc-cCC----ccc--ccCccCCEEeccCCcCCcc------Cccc-ccCCCCCCEEeccCCc
Q 025516 180 IGQLFLSGTAIE-ELP----SSF--ELLLRLWLLDLSDCKRLKS------LPSS-LCKLKSLELLSLRGCS 236 (251)
Q Consensus 180 L~~L~l~~n~i~-~lp----~~~--~~l~~L~~L~l~~n~~~~~------~p~~-~~~l~~L~~L~l~~n~ 236 (251)
|++|.+..|-++ +-. ..+ ...|+|..|...+|..-+. +|.. -.++|-|..|.+.+|.
T Consensus 244 lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 244 LRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred hhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 677777777655 111 111 1345666666666654322 1211 1455666666666653
No 63
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.60 E-value=0.00075 Score=32.22 Aligned_cols=18 Identities=44% Similarity=0.694 Sum_probs=8.7
Q ss_pred ccEEEccccCCccCCccc
Q 025516 180 IGQLFLSGTAIEELPSSF 197 (251)
Q Consensus 180 L~~L~l~~n~i~~lp~~~ 197 (251)
|++|++++|+++.+|+.+
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444555555555444443
No 64
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.56 E-value=0.00051 Score=55.43 Aligned_cols=177 Identities=19% Similarity=0.158 Sum_probs=100.2
Q ss_pred CCccEEEeecccCCCCCc-ccc-ccCCcceecceeEEeeccCCCCCCCCCC-CcCCceEeecCCCccc----ccc-CcCC
Q 025516 62 RKLRFLKFYSSSFNGENR-CKV-SHLQDLRFAEVKYLHWHGYPLKSLPSNH-SAEKLMFLEVPNSDIE----QLW-NSVK 133 (251)
Q Consensus 62 ~~L~~L~l~~n~~~~~~~-~~l-~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l~~L~~L~l~~n~i~----~l~-~~~~ 133 (251)
+.+..+.+.++.+..... ..+ ....+++.++|..|.+++. +.+...+ +++.|++|+++.|+++ .+| ...+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdW--seI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~n 122 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDW--SEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKN 122 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccH--HHHHHHHhcCccceEeeccCCcCCCccccCcccccc
Confidence 344456666665543111 111 2234455666666655542 1222222 6899999999999885 343 4557
Q ss_pred ccEEEcCCCcCCccc-cCccccCCCccEEecCCCCCCC---C----------------CCc----------c--ccCCcc
Q 025516 134 LVILNLSGSKSLKSL-PAGIFNLEFLTELDLSGCSKLK---R----------------LPE----------I--SSGNIG 181 (251)
Q Consensus 134 L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~---~----------------~~~----------~--~~~~L~ 181 (251)
|++|-|.+..+...- ...+..++.+++|.++.|.... + .|. . .++++.
T Consensus 123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~ 202 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVN 202 (418)
T ss_pred eEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccch
Confidence 888888776544432 2334567777888887773211 0 000 0 044555
Q ss_pred EEEccccCCccCC--cccccCccCCEEeccCCcCCccC--cccccCCCCCCEEeccCCcCCCCC
Q 025516 182 QLFLSGTAIEELP--SSFELLLRLWLLDLSDCKRLKSL--PSSLCKLKSLELLSLRGCSNLQRL 241 (251)
Q Consensus 182 ~L~l~~n~i~~lp--~~~~~l~~L~~L~l~~n~~~~~~--p~~~~~l~~L~~L~l~~n~~~~~~ 241 (251)
.+.+..|.+.... .....+|.+.-|.++.|++- ++ ..++.++++|.-|.+.++++...+
T Consensus 203 sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~id-swasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 203 SVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNID-SWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred heeeecCcccchhhcccCCCCCcchhhhhcccccc-cHHHHHHHcCCchhheeeccCCcccccc
Confidence 5555555544222 12334566667777777743 33 256788899999999988776543
No 65
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.10 E-value=0.0016 Score=31.09 Aligned_cols=18 Identities=50% Similarity=0.542 Sum_probs=8.3
Q ss_pred CCEEeccCCcCCccCcccc
Q 025516 203 LWLLDLSDCKRLKSLPSSL 221 (251)
Q Consensus 203 L~~L~l~~n~~~~~~p~~~ 221 (251)
|+.|++++|++. .+|..+
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 445555555443 444433
No 66
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.68 E-value=0.0071 Score=26.78 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=5.5
Q ss_pred CccEEEccccCCccC
Q 025516 179 NIGQLFLSGTAIEEL 193 (251)
Q Consensus 179 ~L~~L~l~~n~i~~l 193 (251)
+|+.|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444443
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.72 E-value=0.0017 Score=52.09 Aligned_cols=87 Identities=23% Similarity=0.088 Sum_probs=66.2
Q ss_pred CCCccEEecCCCCCCCCCCc-cccCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCc-ccccCCCCCCEEec
Q 025516 155 LEFLTELDLSGCSKLKRLPE-ISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLP-SSLCKLKSLELLSL 232 (251)
Q Consensus 155 l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~L~l 232 (251)
+.+.+.|++.+|.+. ++.- ..++.|+.|.|+-|+|+.+.+ +..|++|+.|.|..|.|-..-- ..+.++++|+.|+|
T Consensus 18 l~~vkKLNcwg~~L~-DIsic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DISICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCcc-HHHHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 456677888888643 3333 238899999999999998864 6788999999999998643221 45689999999999
Q ss_pred cCCcCCCCCCh
Q 025516 233 RGCSNLQRLPD 243 (251)
Q Consensus 233 ~~n~~~~~~p~ 243 (251)
..|+=.+.-+.
T Consensus 96 ~ENPCc~~ag~ 106 (388)
T KOG2123|consen 96 DENPCCGEAGQ 106 (388)
T ss_pred ccCCcccccch
Confidence 99876665543
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.93 E-value=0.02 Score=50.23 Aligned_cols=108 Identities=32% Similarity=0.381 Sum_probs=50.6
Q ss_pred cCCccEEEcCCCcCCcc--ccCccccCCCccEEecCCC-CCCCCCC------ccccCCccEEEccccC-Ccc--CCcccc
Q 025516 131 SVKLVILNLSGSKSLKS--LPAGIFNLEFLTELDLSGC-SKLKRLP------EISSGNIGQLFLSGTA-IEE--LPSSFE 198 (251)
Q Consensus 131 ~~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~n-~~~~~~~------~~~~~~L~~L~l~~n~-i~~--lp~~~~ 198 (251)
.+.|+.|.+..|..... .-......+.|++|+++++ ......+ ...+..|+.|+++++. +++ +.....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 34566666655543332 1122334556666666652 2222111 0114566666666665 442 111112
Q ss_pred cCccCCEEeccCCcC-Ccc-CcccccCCCCCCEEeccCCcCC
Q 025516 199 LLLRLWLLDLSDCKR-LKS-LPSSLCKLKSLELLSLRGCSNL 238 (251)
Q Consensus 199 ~l~~L~~L~l~~n~~-~~~-~p~~~~~l~~L~~L~l~~n~~~ 238 (251)
.+++|+.|.+.+|.. +.. +......+++|++|+++.|..+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 356666666555552 211 1223345566666666665544
No 69
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.31 E-value=0.074 Score=26.19 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=12.4
Q ss_pred CCccEEEccccCCccCCcc
Q 025516 178 GNIGQLFLSGTAIEELPSS 196 (251)
Q Consensus 178 ~~L~~L~l~~n~i~~lp~~ 196 (251)
++|+.|++++|+++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566677777777766654
No 70
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.31 E-value=0.074 Score=26.19 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=12.4
Q ss_pred CCccEEEccccCCccCCcc
Q 025516 178 GNIGQLFLSGTAIEELPSS 196 (251)
Q Consensus 178 ~~L~~L~l~~n~i~~lp~~ 196 (251)
++|+.|++++|+++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566677777777766654
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.86 E-value=0.63 Score=32.68 Aligned_cols=53 Identities=11% Similarity=0.182 Sum_probs=20.5
Q ss_pred CccEEEccccCCccCCc-ccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccC
Q 025516 179 NIGQLFLSGTAIEELPS-SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRG 234 (251)
Q Consensus 179 ~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 234 (251)
+++.+.+.. .+..++. .+..+++|+.+++..+ +...-...+.++ .|+.+.+..
T Consensus 59 ~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 59 SLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp T-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 455555543 3333332 3344566666666443 222222344554 666666554
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.23 E-value=0.74 Score=32.33 Aligned_cols=93 Identities=17% Similarity=0.158 Sum_probs=35.4
Q ss_pred cCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCcc-c--cCCccEEEccccCCccCCc-ccccCccCC
Q 025516 129 WNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEI-S--SGNIGQLFLSGTAIEELPS-SFELLLRLW 204 (251)
Q Consensus 129 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~--~~~L~~L~l~~n~i~~lp~-~~~~l~~L~ 204 (251)
....+|+.+.+..+ ........+.++.+++.+.+..+ ...++.. + +++|+.+.+..+ +..++. .+.++ .++
T Consensus 32 ~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~ 106 (129)
T PF13306_consen 32 SNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLK 106 (129)
T ss_dssp TT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--
T ss_pred cccccccccccccc-ccccceeeeeccccccccccccc--ccccccccccccccccccccCcc-ccEEchhhhcCC-Cce
Confidence 33445666666543 22222333445556677666542 2222221 1 556777776554 454543 34555 777
Q ss_pred EEeccCCcCCccCcccccCCCCC
Q 025516 205 LLDLSDCKRLKSLPSSLCKLKSL 227 (251)
Q Consensus 205 ~L~l~~n~~~~~~p~~~~~l~~L 227 (251)
.+.+.. .+...-...+.++++|
T Consensus 107 ~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 107 EINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEE-TT-B-SS----GGG-----
T ss_pred EEEECC-CccEECCccccccccC
Confidence 777764 3233334556666655
No 73
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=92.10 E-value=0.052 Score=46.09 Aligned_cols=108 Identities=25% Similarity=0.333 Sum_probs=59.8
Q ss_pred CCccEEEcCCCcCCccc-cCccc-cCCCccEEecCCCCCCCCC--Ccc--ccCCccEEEccccCCc-c-----CCccccc
Q 025516 132 VKLVILNLSGSKSLKSL-PAGIF-NLEFLTELDLSGCSKLKRL--PEI--SSGNIGQLFLSGTAIE-E-----LPSSFEL 199 (251)
Q Consensus 132 ~~L~~L~l~~n~~~~~~-~~~~~-~l~~L~~L~l~~n~~~~~~--~~~--~~~~L~~L~l~~n~i~-~-----lp~~~~~ 199 (251)
.+|++|.+..|+..+.. ...++ +.+.|+.+++.+|....+. ... .++.|+.|.+++|... + +...-..
T Consensus 320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~ 399 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS 399 (483)
T ss_pred CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence 35666666665532211 11222 3455666666666444322 111 1667777777776532 1 2233356
Q ss_pred CccCCEEeccCCcCCcc-CcccccCCCCCCEEeccCCcCCC
Q 025516 200 LLRLWLLDLSDCKRLKS-LPSSLCKLKSLELLSLRGCSNLQ 239 (251)
Q Consensus 200 l~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~L~l~~n~~~~ 239 (251)
+..|..+.+++++.+.. .-+.+..+++|+.+++.+|+...
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 67777777877775422 23456777788888887776544
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=90.77 E-value=0.086 Score=46.17 Aligned_cols=106 Identities=30% Similarity=0.298 Sum_probs=59.9
Q ss_pred cCcCCccEEEcCCC-cCCcccc----CccccCCCccEEecCCCCCCCCCCcc----ccCCccEEEccccC-Cc--cCCcc
Q 025516 129 WNSVKLVILNLSGS-KSLKSLP----AGIFNLEFLTELDLSGCSKLKRLPEI----SSGNIGQLFLSGTA-IE--ELPSS 196 (251)
Q Consensus 129 ~~~~~L~~L~l~~n-~~~~~~~----~~~~~l~~L~~L~l~~n~~~~~~~~~----~~~~L~~L~l~~n~-i~--~lp~~ 196 (251)
...+.|+.|++++| ......+ .....+++|+.++++++...++..-. .+++|+.|.+..|. ++ .+-..
T Consensus 211 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i 290 (482)
T KOG1947|consen 211 LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI 290 (482)
T ss_pred hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH
Confidence 45567888887763 2111111 22234677788888877644433311 16678888877666 44 34444
Q ss_pred cccCccCCEEeccCCcCCcc--CcccccCCCCCCEEeccC
Q 025516 197 FELLLRLWLLDLSDCKRLKS--LPSSLCKLKSLELLSLRG 234 (251)
Q Consensus 197 ~~~l~~L~~L~l~~n~~~~~--~p~~~~~l~~L~~L~l~~ 234 (251)
...+++|+.|++++|..... +.....++++|+.|.+..
T Consensus 291 ~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 291 AERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred HHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 45677788888887775422 223344466666555443
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.54 E-value=0.026 Score=43.20 Aligned_cols=59 Identities=24% Similarity=0.354 Sum_probs=33.5
Q ss_pred CCceEeecCCCccc-----cccCcCCccEEEcCCCcCCccc-cCcccc-CCCccEEecCCCCCCCC
Q 025516 113 EKLMFLEVPNSDIE-----QLWNSVKLVILNLSGSKSLKSL-PAGIFN-LEFLTELDLSGCSKLKR 171 (251)
Q Consensus 113 ~~L~~L~l~~n~i~-----~l~~~~~L~~L~l~~n~~~~~~-~~~~~~-l~~L~~L~l~~n~~~~~ 171 (251)
..++.++.+++.|. .+.++++++.|.+.+|...+.. -+.+++ .++|+.|++++|+.+++
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 45667777777663 4556667777777776644321 112222 35666677776665443
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.40 E-value=0.001 Score=58.30 Aligned_cols=111 Identities=25% Similarity=0.261 Sum_probs=59.1
Q ss_pred cCcCCccEEEcCCCcCCcc----ccCccc----cCCCccEEecCCCCCCCCCCcc------ccCC-ccEEEccccCCcc-
Q 025516 129 WNSVKLVILNLSGSKSLKS----LPAGIF----NLEFLTELDLSGCSKLKRLPEI------SSGN-IGQLFLSGTAIEE- 192 (251)
Q Consensus 129 ~~~~~L~~L~l~~n~~~~~----~~~~~~----~l~~L~~L~l~~n~~~~~~~~~------~~~~-L~~L~l~~n~i~~- 192 (251)
.....++.++++.|.+... ++..+. ...++++|.+++|..+...-.. ..+. +.+|+++.|++.+
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 3344566666666654321 122222 3556777777777544211100 0222 5557777776652
Q ss_pred ----CCcccccC-ccCCEEeccCCcCCcc----CcccccCCCCCCEEeccCCcCCC
Q 025516 193 ----LPSSFELL-LRLWLLDLSDCKRLKS----LPSSLCKLKSLELLSLRGCSNLQ 239 (251)
Q Consensus 193 ----lp~~~~~l-~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~~~~ 239 (251)
+.+.+..+ +.+++++++.|++... +...+..+++++.+.+++|.+..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 22333344 5567777777776643 33445666777777777765543
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.34 E-value=0.037 Score=26.73 Aligned_cols=14 Identities=36% Similarity=0.228 Sum_probs=6.0
Q ss_pred ccCCEEeccCCcCC
Q 025516 201 LRLWLLDLSDCKRL 214 (251)
Q Consensus 201 ~~L~~L~l~~n~~~ 214 (251)
++|+.|+|++|++.
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34555555555543
No 78
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=90.11 E-value=0.22 Score=24.65 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=13.4
Q ss_pred CCccEEEccccCCccCCc
Q 025516 178 GNIGQLFLSGTAIEELPS 195 (251)
Q Consensus 178 ~~L~~L~l~~n~i~~lp~ 195 (251)
++|++|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 457777888888777775
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.59 E-value=0.011 Score=46.31 Aligned_cols=85 Identities=19% Similarity=0.105 Sum_probs=40.7
Q ss_pred cccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCcccccCccCC
Q 025516 127 QLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPSSFELLLRLW 204 (251)
Q Consensus 127 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~~~~~l~~L~ 204 (251)
++..+.....||++.|+ .-.+-..++.++.+..|+++.|.+ ...|... ...+..+.+..|..+..|.+++..+.++
T Consensus 37 ei~~~kr~tvld~~s~r-~vn~~~n~s~~t~~~rl~~sknq~-~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNR-LVNLGKNFSILTRLVRLDLSKNQI-KFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPK 114 (326)
T ss_pred hhhccceeeeehhhhhH-HHhhccchHHHHHHHHHhccHhhH-hhChhhHHHHHHHHHHHhhccchhhCCccccccCCcc
Confidence 44555566677776665 222333344455555556655432 2222221 2334444444444555555555555555
Q ss_pred EEeccCCcC
Q 025516 205 LLDLSDCKR 213 (251)
Q Consensus 205 ~L~l~~n~~ 213 (251)
.++...+.+
T Consensus 115 ~~e~k~~~~ 123 (326)
T KOG0473|consen 115 KNEQKKTEF 123 (326)
T ss_pred hhhhccCcc
Confidence 555544443
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.04 E-value=0.091 Score=40.32 Aligned_cols=81 Identities=21% Similarity=0.166 Sum_probs=57.4
Q ss_pred CccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCc----cccCCccEEEccccC-CccC-CcccccCccCCEE
Q 025516 133 KLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPE----ISSGNIGQLFLSGTA-IEEL-PSSFELLLRLWLL 206 (251)
Q Consensus 133 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~l~~n~-i~~l-p~~~~~l~~L~~L 206 (251)
.++.+|-+++.+....-..+.+++.++.|.+..|....+-.- ...++|+.|++++|. |++- -..+.++++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 578888888776666666777888888888888865543211 136899999999874 5532 2245688888888
Q ss_pred eccCCcC
Q 025516 207 DLSDCKR 213 (251)
Q Consensus 207 ~l~~n~~ 213 (251)
.+.+-+.
T Consensus 182 ~l~~l~~ 188 (221)
T KOG3864|consen 182 HLYDLPY 188 (221)
T ss_pred HhcCchh
Confidence 8876543
No 81
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=88.64 E-value=0.17 Score=43.09 Aligned_cols=109 Identities=26% Similarity=0.331 Sum_probs=69.8
Q ss_pred cCCccEEEcCCCcCCcccc-Cccc-cCCCccEEecCCCCCCCCCCccc----cCCccEEEccccCCc---cCCcccccCc
Q 025516 131 SVKLVILNLSGSKSLKSLP-AGIF-NLEFLTELDLSGCSKLKRLPEIS----SGNIGQLFLSGTAIE---ELPSSFELLL 201 (251)
Q Consensus 131 ~~~L~~L~l~~n~~~~~~~-~~~~-~l~~L~~L~l~~n~~~~~~~~~~----~~~L~~L~l~~n~i~---~lp~~~~~l~ 201 (251)
...|++|+.++|...+..+ ..++ +..+|+.+.+++|+..++..-.. .+.|+.+++.++... .+...-.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 4478888888876543322 2233 46778888888887655443211 678888888877654 2444445788
Q ss_pred cCCEEeccCCcCCccC-----cccccCCCCCCEEeccCCcCCC
Q 025516 202 RLWLLDLSDCKRLKSL-----PSSLCKLKSLELLSLRGCSNLQ 239 (251)
Q Consensus 202 ~L~~L~l~~n~~~~~~-----p~~~~~l~~L~~L~l~~n~~~~ 239 (251)
.|+++.+++|...... ...-.++..|..+.+++|+.++
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT 415 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence 8888888887644322 2223456678888888887665
No 82
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=86.81 E-value=0.56 Score=23.22 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=10.6
Q ss_pred CCceEeecCCCccccccC
Q 025516 113 EKLMFLEVPNSDIEQLWN 130 (251)
Q Consensus 113 ~~L~~L~l~~n~i~~l~~ 130 (251)
++|+.|++++|+|+.+.+
T Consensus 2 ~~L~~L~L~~NkI~~IEn 19 (26)
T smart00365 2 TNLEELDLSQNKIKKIEN 19 (26)
T ss_pred CccCEEECCCCccceecC
Confidence 456666666666655443
No 83
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=86.51 E-value=0.004 Score=54.64 Aligned_cols=161 Identities=23% Similarity=0.163 Sum_probs=101.1
Q ss_pred ceecceeEEeeccCCCCCCCCCC-CcCCceEeecCCCcccc---------ccCc-CCccEEEcCCCcCCcc----ccCcc
Q 025516 88 LRFAEVKYLHWHGYPLKSLPSNH-SAEKLMFLEVPNSDIEQ---------LWNS-VKLVILNLSGSKSLKS----LPAGI 152 (251)
Q Consensus 88 l~~l~L~~~~l~~~~~~~~~~~~-~l~~L~~L~l~~n~i~~---------l~~~-~~L~~L~l~~n~~~~~----~~~~~ 152 (251)
+..+.|..|.+.......+.... ...+|..++++.|.+.. +... ..+++|++..|..... +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 33445555555543333333322 35667777777777642 2222 3577788877775543 34445
Q ss_pred ccCCCccEEecCCCCCCC--------CCCc--cccCCccEEEccccCCcc-----CCcccccCcc-CCEEeccCCcCCcc
Q 025516 153 FNLEFLTELDLSGCSKLK--------RLPE--ISSGNIGQLFLSGTAIEE-----LPSSFELLLR-LWLLDLSDCKRLKS 216 (251)
Q Consensus 153 ~~l~~L~~L~l~~n~~~~--------~~~~--~~~~~L~~L~l~~n~i~~-----lp~~~~~l~~-L~~L~l~~n~~~~~ 216 (251)
.....++.++++.|.+.. .++. ....++++|++.+|.++. +...+...+. +..+++.+|++-..
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 556789999999997641 1111 124579999999998872 2223455555 77799999886533
Q ss_pred ----CcccccCC-CCCCEEeccCCcCCCCCChhhhhc
Q 025516 217 ----LPSSLCKL-KSLELLSLRGCSNLQRLPDRLASY 248 (251)
Q Consensus 217 ----~p~~~~~l-~~L~~L~l~~n~~~~~~p~~l~~l 248 (251)
....+..+ ..++.++++.|.+...-...+.+.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~ 285 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEV 285 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHH
Confidence 33455566 788999999999988777666554
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=81.19 E-value=0.03 Score=43.95 Aligned_cols=83 Identities=18% Similarity=0.025 Sum_probs=50.7
Q ss_pred cCCCccEEecCCCCCCCCCCccc-cCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEec
Q 025516 154 NLEFLTELDLSGCSKLKRLPEIS-SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSL 232 (251)
Q Consensus 154 ~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 232 (251)
....-+.||++.|+....-.... ++.+..|+++.|++..+|..++....++.+++..|. ....|..++..+.+++++.
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcchhhh
Confidence 34555666776665332211111 456667777777777777777666667777665555 4555677777777777776
Q ss_pred cCCcC
Q 025516 233 RGCSN 237 (251)
Q Consensus 233 ~~n~~ 237 (251)
..+.+
T Consensus 119 k~~~~ 123 (326)
T KOG0473|consen 119 KKTEF 123 (326)
T ss_pred ccCcc
Confidence 66543
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=79.25 E-value=1.7 Score=21.22 Aligned_cols=16 Identities=38% Similarity=0.727 Sum_probs=10.5
Q ss_pred CCCCCEEeccCCcCCC
Q 025516 224 LKSLELLSLRGCSNLQ 239 (251)
Q Consensus 224 l~~L~~L~l~~n~~~~ 239 (251)
+++|+.|++++|..++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 4567777777776543
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=69.81 E-value=4 Score=20.34 Aligned_cols=13 Identities=23% Similarity=0.324 Sum_probs=6.1
Q ss_pred CccEEEccccCCc
Q 025516 179 NIGQLFLSGTAIE 191 (251)
Q Consensus 179 ~L~~L~l~~n~i~ 191 (251)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 3444555555443
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=68.57 E-value=2.8 Score=37.24 Aligned_cols=14 Identities=14% Similarity=0.344 Sum_probs=6.5
Q ss_pred CCceEeecCCCccc
Q 025516 113 EKLMFLEVPNSDIE 126 (251)
Q Consensus 113 ~~L~~L~l~~n~i~ 126 (251)
..+..+.+++|++-
T Consensus 218 p~i~sl~lsnNrL~ 231 (585)
T KOG3763|consen 218 PEILSLSLSNNRLY 231 (585)
T ss_pred cceeeeecccchhh
Confidence 33444445555443
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=51.68 E-value=7.7 Score=34.64 Aligned_cols=63 Identities=21% Similarity=0.103 Sum_probs=36.2
Q ss_pred cCCCccEEecCCCCCCCC--CCc--cccCCccEEEcccc--CCccCCcccc--cCccCCEEeccCCcCCccC
Q 025516 154 NLEFLTELDLSGCSKLKR--LPE--ISSGNIGQLFLSGT--AIEELPSSFE--LLLRLWLLDLSDCKRLKSL 217 (251)
Q Consensus 154 ~l~~L~~L~l~~n~~~~~--~~~--~~~~~L~~L~l~~n--~i~~lp~~~~--~l~~L~~L~l~~n~~~~~~ 217 (251)
+.+.+..+.+++|++-.. +.. ...++|..|+|++| .+...+ ++. +...|+.|.+.+|++....
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccccch
Confidence 345666777777764431 111 12677888888888 443222 122 3345778888888876443
No 89
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=47.45 E-value=18 Score=16.58 Aligned_cols=18 Identities=39% Similarity=0.839 Sum_probs=11.7
Q ss_pred CceEeecCCCccccccCc
Q 025516 114 KLMFLEVPNSDIEQLWNS 131 (251)
Q Consensus 114 ~L~~L~l~~n~i~~l~~~ 131 (251)
+|..|++.++++..++.+
T Consensus 1 ~LVeL~m~~S~lekLW~G 18 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEG 18 (20)
T ss_pred CcEEEECCCCChHHhcCc
Confidence 356677777777666554
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=36.09 E-value=71 Score=28.37 Aligned_cols=23 Identities=4% Similarity=0.084 Sum_probs=16.6
Q ss_pred CCccEEEeecccCCCCCcccccc
Q 025516 62 RKLRFLKFYSSSFNGENRCKVSH 84 (251)
Q Consensus 62 ~~L~~L~l~~n~~~~~~~~~l~~ 84 (251)
+.+++++++-|.+....+.++..
T Consensus 165 pr~r~~dls~npi~dkvpihl~~ 187 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQ 187 (553)
T ss_pred chhhhhccCCCcccccCCccccC
Confidence 55678888888887776666643
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=29.14 E-value=35 Score=36.84 Aligned_cols=15 Identities=33% Similarity=0.470 Sum_probs=8.8
Q ss_pred cCCccEEEccccCCc
Q 025516 177 SGNIGQLFLSGTAIE 191 (251)
Q Consensus 177 ~~~L~~L~l~~n~i~ 191 (251)
+++|++|+|++|.+.
T Consensus 18 L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 18 LCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCceEEEeeCCccc
Confidence 456666666666544
No 92
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=28.20 E-value=1.1e+02 Score=16.81 Aligned_cols=7 Identities=29% Similarity=0.178 Sum_probs=3.4
Q ss_pred CccEEec
Q 025516 157 FLTELDL 163 (251)
Q Consensus 157 ~L~~L~l 163 (251)
++++|.+
T Consensus 13 ~l~~L~~ 19 (44)
T PF05725_consen 13 SLKSLIF 19 (44)
T ss_pred CCeEEEE
Confidence 3455555
Done!