Query 025516
Match_columns 251
No_of_seqs 134 out of 1831
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 11:55:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025516.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025516hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 3.4E-25 1.2E-29 183.7 17.2 207 34-250 79-302 (328)
2 1ogq_A PGIP-2, polygalacturona 99.9 1.8E-24 6.1E-29 178.3 15.1 204 36-243 50-286 (313)
3 1ogq_A PGIP-2, polygalacturona 99.9 5.3E-25 1.8E-29 181.5 11.8 202 35-243 75-309 (313)
4 3rgz_A Protein brassinosteroid 99.9 2.2E-24 7.6E-29 197.5 16.6 191 55-249 435-704 (768)
5 3rgz_A Protein brassinosteroid 99.9 5.1E-24 1.8E-28 195.1 15.2 204 35-244 441-723 (768)
6 4fcg_A Uncharacterized protein 99.9 2.7E-23 9.2E-28 172.3 14.8 183 60-249 79-277 (328)
7 1ozn_A Reticulon 4 receptor; N 99.9 1.4E-22 5E-27 164.6 15.1 202 35-242 31-242 (285)
8 3zyi_A Leucine-rich repeat-con 99.9 3.3E-22 1.1E-26 172.6 17.4 204 37-248 76-289 (452)
9 3zyj_A Leucine-rich repeat-con 99.9 3.6E-22 1.2E-26 171.8 17.4 204 37-248 65-278 (440)
10 3o53_A Protein LRIM1, AGAP0063 99.9 6.4E-23 2.2E-27 169.3 10.3 209 34-248 32-261 (317)
11 2z66_A Variable lymphocyte rec 99.9 1.1E-22 3.8E-27 166.8 11.1 202 37-240 29-263 (306)
12 1xku_A Decorin; proteoglycan, 99.9 1.6E-21 5.6E-26 161.6 17.9 202 36-247 52-261 (330)
13 3oja_A Leucine-rich immune mol 99.9 1.9E-22 6.5E-27 175.7 11.6 209 34-248 32-261 (487)
14 2z62_A TOLL-like receptor 4, v 99.9 7.4E-22 2.5E-26 159.6 14.2 202 36-242 28-241 (276)
15 1ozn_A Reticulon 4 receptor; N 99.9 1.7E-21 5.8E-26 158.2 15.8 185 61-249 31-225 (285)
16 3v47_A TOLL-like receptor 5B a 99.9 1E-21 3.5E-26 169.4 15.1 113 130-242 297-412 (455)
17 2ft3_A Biglycan; proteoglycan, 99.9 1.5E-21 5.3E-26 161.9 14.9 195 36-239 54-278 (332)
18 3v47_A TOLL-like receptor 5B a 99.9 2.1E-21 7.3E-26 167.4 16.2 72 177-248 298-370 (455)
19 2z66_A Variable lymphocyte rec 99.9 2E-21 6.8E-26 159.4 14.2 188 57-248 96-297 (306)
20 2id5_A Lingo-1, leucine rich r 99.9 1.9E-21 6.6E-26 168.8 14.0 204 34-239 54-310 (477)
21 1wwl_A Monocyte differentiatio 99.9 1.9E-21 6.5E-26 160.1 13.0 199 34-239 93-310 (312)
22 4eco_A Uncharacterized protein 99.9 8.3E-22 2.8E-26 176.9 11.3 187 54-246 198-423 (636)
23 4eco_A Uncharacterized protein 99.9 6.1E-21 2.1E-25 171.3 16.8 207 36-249 305-566 (636)
24 3rfs_A Internalin B, repeat mo 99.9 2.2E-21 7.4E-26 156.7 12.0 196 36-249 41-246 (272)
25 2o6q_A Variable lymphocyte rec 99.9 3.9E-20 1.3E-24 149.1 19.0 176 62-242 37-222 (270)
26 3o6n_A APL1; leucine-rich repe 99.9 1.5E-20 5.2E-25 159.2 17.0 204 36-248 45-317 (390)
27 3t6q_A CD180 antigen; protein- 99.9 1.7E-20 6E-25 167.3 17.5 116 131-247 424-545 (606)
28 3zyi_A Leucine-rich repeat-con 99.9 1.3E-20 4.3E-25 162.7 15.4 184 62-249 75-266 (452)
29 3oja_B Anopheles plasmodium-re 99.8 1.9E-20 6.6E-25 167.0 16.9 189 53-248 66-323 (597)
30 2z80_A TOLL-like receptor 2, v 99.8 5.7E-22 1.9E-26 165.8 6.6 198 37-242 53-318 (353)
31 3zyj_A Leucine-rich repeat-con 99.8 3.5E-20 1.2E-24 159.5 17.6 198 33-239 85-293 (440)
32 3rfs_A Internalin B, repeat mo 99.8 5.8E-20 2E-24 148.3 17.8 179 57-242 36-222 (272)
33 3o6n_A APL1; leucine-rich repe 99.8 1.7E-20 5.8E-25 158.9 15.0 88 151-239 243-332 (390)
34 3oja_B Anopheles plasmodium-re 99.8 1.5E-20 5E-25 167.7 15.3 90 150-240 248-339 (597)
35 3t6q_A CD180 antigen; protein- 99.8 2.7E-20 9.1E-25 166.1 16.7 212 34-249 299-524 (606)
36 1p9a_G Platelet glycoprotein I 99.8 2.7E-20 9.1E-25 151.7 15.2 194 35-239 9-209 (290)
37 2id5_A Lingo-1, leucine rich r 99.8 1.1E-20 3.8E-25 164.1 13.5 204 36-246 32-269 (477)
38 2ft3_A Biglycan; proteoglycan, 99.8 5.8E-20 2E-24 152.4 17.2 206 33-248 75-319 (332)
39 4fmz_A Internalin; leucine ric 99.8 6.5E-20 2.2E-24 152.8 17.1 108 131-242 220-328 (347)
40 1xku_A Decorin; proteoglycan, 99.8 3.2E-20 1.1E-24 153.8 15.0 183 61-249 51-240 (330)
41 3vq2_A TLR4, TOLL-like recepto 99.8 2.7E-20 9.2E-25 166.1 15.3 202 37-242 351-562 (606)
42 2z80_A TOLL-like receptor 2, v 99.8 2.9E-21 1E-25 161.5 7.9 177 35-218 75-318 (353)
43 4ecn_A Leucine-rich repeat pro 99.8 9.5E-20 3.2E-24 167.7 17.2 207 34-248 546-805 (876)
44 1ziw_A TOLL-like receptor 3; i 99.8 4.8E-20 1.6E-24 166.6 14.8 206 36-248 25-295 (680)
45 1h6u_A Internalin H; cell adhe 99.8 7.2E-20 2.5E-24 150.4 14.5 189 35-239 40-231 (308)
46 4ecn_A Leucine-rich repeat pro 99.8 3E-20 1E-24 171.0 12.7 181 55-242 441-661 (876)
47 3vq2_A TLR4, TOLL-like recepto 99.8 4.3E-20 1.5E-24 164.8 13.4 138 111-249 397-544 (606)
48 3oja_A Leucine-rich immune mol 99.8 1.5E-20 5E-25 163.8 9.8 186 55-248 23-236 (487)
49 1p9a_G Platelet glycoprotein I 99.8 2.2E-19 7.6E-24 146.2 15.5 181 58-248 6-194 (290)
50 3m19_A Variable lymphocyte rec 99.8 2.9E-19 9.8E-24 142.5 15.8 171 62-240 14-194 (251)
51 2o6q_A Variable lymphocyte rec 99.8 7.3E-19 2.5E-23 141.7 17.9 179 62-248 16-204 (270)
52 2z7x_B TOLL-like receptor 1, v 99.8 5.9E-19 2E-23 154.7 18.8 174 62-242 302-485 (520)
53 3o53_A Protein LRIM1, AGAP0063 99.8 1.2E-20 4.1E-25 155.6 7.3 186 55-248 27-236 (317)
54 1ziw_A TOLL-like receptor 3; i 99.8 2.8E-19 9.4E-24 161.6 16.6 187 54-243 397-602 (680)
55 4glp_A Monocyte differentiatio 99.8 9.3E-20 3.2E-24 149.8 11.8 189 38-238 93-307 (310)
56 1wwl_A Monocyte differentiatio 99.8 5E-20 1.7E-24 151.6 9.6 179 60-248 93-295 (312)
57 3j0a_A TOLL-like receptor 5; m 99.8 2.9E-19 1E-23 165.2 15.0 91 55-149 66-165 (844)
58 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 7.6E-19 2.6E-23 155.5 17.0 149 93-242 355-514 (562)
59 2xwt_C Thyrotropin receptor; s 99.8 1.8E-19 6.3E-24 142.5 10.7 125 111-237 78-217 (239)
60 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.8E-19 6.1E-24 159.6 11.8 100 36-143 52-157 (562)
61 3bz5_A Internalin-J, INLJ; leu 99.8 2.7E-18 9.2E-23 148.3 18.7 191 35-246 41-254 (457)
62 2z62_A TOLL-like receptor 4, v 99.8 6.1E-19 2.1E-23 142.5 13.7 180 62-248 28-223 (276)
63 2xwt_C Thyrotropin receptor; s 99.8 5.2E-19 1.8E-23 139.9 13.0 190 36-236 31-237 (239)
64 2z7x_B TOLL-like receptor 1, v 99.8 2.8E-18 9.6E-23 150.4 18.8 183 62-248 247-467 (520)
65 2z63_A TOLL-like receptor 4, v 99.8 4.1E-19 1.4E-23 157.1 13.6 112 131-242 420-535 (570)
66 2z63_A TOLL-like receptor 4, v 99.8 1.9E-19 6.6E-24 159.3 11.4 204 37-249 305-518 (570)
67 1o6v_A Internalin A; bacterial 99.8 1.8E-18 6.2E-23 149.8 17.1 123 112-239 264-389 (466)
68 4fmz_A Internalin; leucine ric 99.8 2.3E-18 7.7E-23 143.5 16.7 189 36-239 44-257 (347)
69 4g8a_A TOLL-like receptor 4; l 99.8 7.7E-19 2.6E-23 156.9 14.8 72 177-248 493-565 (635)
70 3bz5_A Internalin-J, INLJ; leu 99.8 3.6E-18 1.2E-22 147.6 18.3 190 34-243 62-282 (457)
71 1jl5_A Outer protein YOPM; leu 99.8 3.5E-19 1.2E-23 153.7 11.3 192 36-238 11-250 (454)
72 3j0a_A TOLL-like receptor 5; m 99.8 6.7E-19 2.3E-23 162.8 13.5 178 55-238 307-517 (844)
73 3m19_A Variable lymphocyte rec 99.8 6.6E-18 2.3E-22 134.6 17.1 155 94-249 17-179 (251)
74 2z81_A CD282 antigen, TOLL-lik 99.8 5.8E-19 2E-23 155.6 12.0 193 37-242 311-514 (549)
75 1o6v_A Internalin A; bacterial 99.8 1.2E-17 4E-22 144.7 20.0 179 58-241 108-325 (466)
76 1h6u_A Internalin H; cell adhe 99.8 3.7E-18 1.3E-22 140.1 15.6 178 57-248 36-216 (308)
77 3cvr_A Invasion plasmid antige 99.8 1.4E-18 4.7E-23 153.4 13.3 187 37-249 60-254 (571)
78 2z81_A CD282 antigen, TOLL-lik 99.8 5.6E-18 1.9E-22 149.3 14.8 185 58-249 306-497 (549)
79 3g06_A SSPH2 (leucine-rich rep 99.8 1.9E-17 6.6E-22 147.6 18.2 88 156-249 221-308 (622)
80 4glp_A Monocyte differentiatio 99.8 1.2E-18 4.1E-23 143.2 9.6 175 60-239 89-286 (310)
81 1jl5_A Outer protein YOPM; leu 99.8 1.1E-17 3.7E-22 144.5 15.8 87 157-248 318-421 (454)
82 3e6j_A Variable lymphocyte rec 99.8 2.7E-17 9.2E-22 129.3 16.4 143 99-242 27-176 (229)
83 2o6s_A Variable lymphocyte rec 99.8 5.9E-18 2E-22 131.1 11.7 131 112-249 51-189 (208)
84 2v70_A SLIT-2, SLIT homolog 2 99.8 1.6E-17 5.5E-22 129.8 14.2 142 100-242 20-170 (220)
85 2v9t_B SLIT homolog 2 protein 99.7 4.2E-17 1.4E-21 127.5 15.6 142 97-239 17-166 (220)
86 1h6t_A Internalin B; cell adhe 99.7 1.5E-17 5.1E-22 135.5 12.9 168 58-238 42-213 (291)
87 4ezg_A Putative uncharacterize 99.7 9.1E-18 3.1E-22 129.0 11.0 148 59-238 41-194 (197)
88 4ezg_A Putative uncharacterize 99.7 1.4E-17 4.6E-22 128.0 11.0 146 36-215 44-195 (197)
89 3cvr_A Invasion plasmid antige 99.7 8.5E-17 2.9E-21 142.0 17.1 164 62-249 59-230 (571)
90 2o6s_A Variable lymphocyte rec 99.7 2.4E-16 8.3E-21 121.9 16.6 142 100-242 16-165 (208)
91 3g06_A SSPH2 (leucine-rich rep 99.7 4.9E-16 1.7E-20 138.6 20.5 64 178-249 221-284 (622)
92 4g8a_A TOLL-like receptor 4; l 99.7 1.5E-16 5.1E-21 142.1 16.9 183 55-240 390-582 (635)
93 2ca6_A RAN GTPase-activating p 99.7 1.1E-19 3.8E-24 153.7 -3.3 210 33-242 57-320 (386)
94 1m9s_A Internalin B; cell inva 99.7 4.7E-17 1.6E-21 144.8 13.2 150 57-216 60-212 (605)
95 1h6t_A Internalin B; cell adhe 99.7 3.1E-17 1.1E-21 133.6 10.9 167 36-216 46-215 (291)
96 3goz_A Leucine-rich repeat-con 99.7 8E-19 2.7E-23 147.3 1.0 43 38-82 24-71 (362)
97 2ca6_A RAN GTPase-activating p 99.7 3.9E-19 1.3E-23 150.3 -1.8 211 35-245 31-298 (386)
98 1m9s_A Internalin B; cell inva 99.7 1E-16 3.5E-21 142.7 13.2 171 57-240 38-212 (605)
99 2ast_B S-phase kinase-associat 99.7 5.3E-18 1.8E-22 140.5 4.7 178 55-236 61-258 (336)
100 4ay9_X Follicle-stimulating ho 99.7 3.4E-16 1.2E-20 130.7 14.1 198 36-243 30-241 (350)
101 2xot_A Amphoterin-induced prot 99.7 5.5E-16 1.9E-20 130.0 14.5 167 65-239 21-203 (361)
102 2ast_B S-phase kinase-associat 99.7 4.1E-18 1.4E-22 141.2 1.4 175 58-235 89-282 (336)
103 2xot_A Amphoterin-induced prot 99.7 3.5E-16 1.2E-20 131.2 12.7 148 62-214 39-202 (361)
104 2v9t_B SLIT homolog 2 protein 99.7 8.1E-16 2.8E-20 120.1 13.7 134 116-249 14-152 (220)
105 4ay9_X Follicle-stimulating ho 99.7 3.2E-16 1.1E-20 130.8 11.8 183 61-248 29-225 (350)
106 2v70_A SLIT-2, SLIT homolog 2 99.7 1.1E-15 3.9E-20 119.3 13.9 134 116-249 14-153 (220)
107 4b8c_D Glucose-repressible alc 99.7 1.4E-17 4.7E-22 151.4 3.3 183 62-247 173-363 (727)
108 3goz_A Leucine-rich repeat-con 99.7 1.1E-17 3.9E-22 140.2 2.4 190 55-244 15-244 (362)
109 1w8a_A SLIT protein; signaling 99.7 1.1E-15 3.9E-20 116.7 13.0 127 116-242 11-143 (192)
110 2ell_A Acidic leucine-rich nuc 99.7 8.2E-16 2.8E-20 114.9 10.9 130 112-244 23-165 (168)
111 1dce_A Protein (RAB geranylger 99.7 9E-19 3.1E-23 154.9 -6.2 178 59-242 346-550 (567)
112 3e6j_A Variable lymphocyte rec 99.7 3.1E-15 1.1E-19 117.5 14.6 133 115-248 21-158 (229)
113 1xeu_A Internalin C; cellular 99.6 1.2E-15 4.2E-20 122.3 11.7 149 57-216 36-187 (263)
114 1z7x_W Ribonuclease inhibitor; 99.6 9.6E-19 3.3E-23 151.0 -7.4 104 111-214 225-354 (461)
115 2je0_A Acidic leucine-rich nuc 99.6 1.1E-15 3.8E-20 111.9 9.3 120 113-234 17-149 (149)
116 1xeu_A Internalin C; cellular 99.6 1.6E-15 5.5E-20 121.7 9.8 167 60-240 17-187 (263)
117 1z7x_W Ribonuclease inhibitor; 99.6 6.5E-18 2.2E-22 145.8 -5.3 38 200-237 255-296 (461)
118 2o6r_A Variable lymphocyte rec 99.6 1.1E-14 3.7E-19 109.7 13.1 127 116-242 10-141 (177)
119 1a9n_A U2A', U2A'; complex (nu 99.6 1.1E-15 3.8E-20 115.2 7.1 124 111-237 17-152 (176)
120 2wfh_A SLIT homolog 2 protein 99.6 1.3E-14 4.6E-19 110.9 13.2 121 117-238 14-139 (193)
121 4b8c_D Glucose-repressible alc 99.6 4E-15 1.4E-19 135.3 9.1 117 128-247 220-338 (727)
122 2je0_A Acidic leucine-rich nuc 99.6 1.1E-14 3.9E-19 106.5 9.4 119 130-249 15-140 (149)
123 1w8a_A SLIT protein; signaling 99.5 8.6E-14 2.9E-18 106.3 12.7 120 98-218 15-143 (192)
124 2ell_A Acidic leucine-rich nuc 99.5 5E-14 1.7E-18 105.1 10.5 118 131-249 23-147 (168)
125 2wfh_A SLIT homolog 2 protein 99.5 2.9E-13 9.9E-18 103.4 12.8 116 98-214 17-139 (193)
126 2o6r_A Variable lymphocyte rec 99.5 6.5E-13 2.2E-17 99.9 13.1 119 99-218 15-141 (177)
127 1a9n_A U2A', U2A'; complex (nu 99.5 1.8E-13 6.3E-18 102.9 9.4 99 114-214 43-153 (176)
128 2r9u_A Variable lymphocyte rec 99.4 1.6E-12 5.3E-17 97.7 12.2 98 116-213 15-117 (174)
129 1dce_A Protein (RAB geranylger 99.4 7.2E-13 2.5E-17 117.2 11.5 172 55-232 365-567 (567)
130 3g39_A Variable lymphocyte rec 99.4 1.7E-12 5.9E-17 97.1 11.8 100 115-214 11-115 (170)
131 1ds9_A Outer arm dynein; leuci 99.4 1.1E-15 3.9E-20 117.3 -6.6 118 112-231 47-180 (198)
132 1ds9_A Outer arm dynein; leuci 99.4 2.1E-15 7.2E-20 115.8 -5.8 113 127-243 43-158 (198)
133 3g39_A Variable lymphocyte rec 99.4 3.7E-12 1.3E-16 95.2 11.4 104 134-240 11-117 (170)
134 2r9u_A Variable lymphocyte rec 99.4 5.1E-12 1.7E-16 94.8 11.3 101 135-238 15-118 (174)
135 3sb4_A Hypothetical leucine ri 99.3 1.3E-11 4.6E-16 101.8 11.9 92 155-248 225-320 (329)
136 3ogk_B Coronatine-insensitive 99.2 5.1E-13 1.8E-17 118.6 -0.4 57 177-233 269-326 (592)
137 2p1m_B Transport inhibitor res 99.2 2E-12 7E-17 114.7 1.2 55 177-232 288-345 (594)
138 3ogk_B Coronatine-insensitive 99.2 8.9E-13 3E-17 117.0 -1.6 33 177-209 292-326 (592)
139 3un9_A NLR family member X1; l 99.2 1.2E-13 4.2E-18 116.0 -7.7 159 61-221 71-259 (372)
140 2ifg_A High affinity nerve gro 99.1 3.5E-10 1.2E-14 93.9 10.7 97 118-214 13-116 (347)
141 3sb4_A Hypothetical leucine ri 99.1 2.8E-10 9.6E-15 93.9 8.0 57 177-234 225-283 (329)
142 2p1m_B Transport inhibitor res 99.0 8.6E-12 2.9E-16 110.7 -2.5 175 58-235 101-324 (594)
143 2ifg_A High affinity nerve gro 99.0 1.6E-09 5.4E-14 89.9 10.1 90 102-192 20-117 (347)
144 3un9_A NLR family member X1; l 98.9 7.4E-11 2.5E-15 99.0 -1.7 135 112-246 100-260 (372)
145 4fdw_A Leucine rich hypothetic 98.9 1.6E-08 5.5E-13 85.7 12.0 173 55-239 173-359 (401)
146 2ra8_A Uncharacterized protein 98.7 7.1E-09 2.4E-13 86.5 4.5 15 58-72 135-149 (362)
147 2ra8_A Uncharacterized protein 98.6 9.3E-09 3.2E-13 85.8 2.7 129 111-239 170-321 (362)
148 4fdw_A Leucine rich hypothetic 98.6 6.7E-07 2.3E-11 75.7 13.3 169 55-234 129-332 (401)
149 1io0_A Tropomodulin; LRR prote 98.5 2.3E-08 8E-13 75.5 2.2 110 128-237 32-163 (185)
150 3rw6_A Nuclear RNA export fact 98.4 5.6E-08 1.9E-12 77.4 2.0 77 154-231 168-257 (267)
151 3e4g_A ATP synthase subunit S, 98.4 2.1E-07 7.1E-12 69.2 3.3 81 132-212 61-150 (176)
152 1io0_A Tropomodulin; LRR prote 98.3 2.1E-07 7.3E-12 70.1 2.4 104 111-214 34-164 (185)
153 3rw6_A Nuclear RNA export fact 98.2 1.7E-06 5.8E-11 68.8 5.5 95 113-207 141-257 (267)
154 3e4g_A ATP synthase subunit S, 97.8 3.9E-06 1.3E-10 62.3 0.9 38 133-170 115-153 (176)
155 4fs7_A Uncharacterized protein 97.3 0.0023 7.9E-08 53.6 11.7 80 152-235 293-376 (394)
156 3rfe_A Platelet glycoprotein I 97.3 0.00064 2.2E-08 47.8 6.8 55 160-214 12-68 (130)
157 4gt6_A Cell surface protein; l 97.3 0.007 2.4E-07 50.6 14.4 21 53-73 78-98 (394)
158 3rfe_A Platelet glycoprotein I 97.3 0.0006 2E-08 48.0 6.1 56 181-238 11-68 (130)
159 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00029 9.9E-09 53.2 3.1 105 131-235 40-167 (197)
160 4fs7_A Uncharacterized protein 97.0 0.0039 1.3E-07 52.2 9.6 158 60-230 228-393 (394)
161 4gt6_A Cell surface protein; l 96.9 0.0096 3.3E-07 49.8 11.4 116 112-234 264-387 (394)
162 4h09_A Hypothetical leucine ri 96.7 0.078 2.7E-06 43.8 15.0 57 177-234 285-342 (379)
163 1pgv_A TMD-1, tropomodulin TMD 96.7 0.0011 3.8E-08 50.0 3.2 82 154-235 39-136 (197)
164 4h09_A Hypothetical leucine ri 96.3 0.033 1.1E-06 46.1 10.4 56 177-233 262-318 (379)
165 2lz0_A Uncharacterized protein 52.3 20 0.00067 23.2 4.1 37 197-234 16-52 (100)
166 2a5y_B CED-4; apoptosis; HET: 26.5 18 0.0006 31.4 0.7 17 2-18 452-468 (549)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=3.4e-25 Score=183.74 Aligned_cols=207 Identities=26% Similarity=0.307 Sum_probs=172.1
Q ss_pred CCCceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCC-Cc
Q 025516 34 GTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH-SA 112 (251)
Q Consensus 34 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l 112 (251)
....+..+.+..+.+..+ |..+..+++|++|++++|.+. ..+..+..+.+|+.++++.|.+ ..+|..+ .+
T Consensus 79 ~~~~l~~L~L~~n~l~~l---p~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l-----~~lp~~l~~l 149 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQF---PDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPL-----RALPASIASL 149 (328)
T ss_dssp TSTTCCEEEEESSCCSSC---CSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCC-----CCCCGGGGGC
T ss_pred cccceeEEEccCCCchhc---ChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCcc-----ccCcHHHhcC
Confidence 346777888887777643 556788999999999999998 5666777777766666665554 4677665 68
Q ss_pred CCceEeecCCCccc-ccc-------------CcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc-c
Q 025516 113 EKLMFLEVPNSDIE-QLW-------------NSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-S 177 (251)
Q Consensus 113 ~~L~~L~l~~n~i~-~l~-------------~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~ 177 (251)
++|++|++++|++. .++ .+++|++|++++|.+. .+|..++++++|++|++++|.+.+..+... +
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l 228 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHL 228 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGC
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccC
Confidence 99999999997653 232 3889999999999855 889889999999999999998876444333 8
Q ss_pred CCccEEEccccCCc-cCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhccc
Q 025516 178 GNIGQLFLSGTAIE-ELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYRR 250 (251)
Q Consensus 178 ~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~ 250 (251)
++|++|++++|.+. .+|..++.+++|+.|++++|.+.+.+|..++.+++|++|++++|++.+.+|++++++++
T Consensus 229 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~ 302 (328)
T 4fcg_A 229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302 (328)
T ss_dssp TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence 99999999998876 78888999999999999999999999999999999999999999999999999998764
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=1.8e-24 Score=178.28 Aligned_cols=204 Identities=18% Similarity=0.240 Sum_probs=136.0
Q ss_pred CceEEEEeecCCcccccCCchhhhcCCCccEEEeec-ccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCC-CcC
Q 025516 36 EKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYS-SSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH-SAE 113 (251)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l~ 113 (251)
.+++.+.+..+.+......|..|.++++|++|++++ |.+.+..+..+..+.+|+.++++.|.+.+ .+|..+ .++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG----AIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE----ECCGGGGGCT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC----cCCHHHhCCC
Confidence 567777777766653213477899999999999994 88888888888889888888888888775 455444 578
Q ss_pred CceEeecCCCccc-----cccCcCCccEEEcCCCcCCccccCccccCC-CccEEecCCCCCCCCCCccc-cCCccEEEcc
Q 025516 114 KLMFLEVPNSDIE-----QLWNSVKLVILNLSGSKSLKSLPAGIFNLE-FLTELDLSGCSKLKRLPEIS-SGNIGQLFLS 186 (251)
Q Consensus 114 ~L~~L~l~~n~i~-----~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~ 186 (251)
+|++|++++|.+. .+..+++|++|++++|.+.+.+|..++.++ +|++|++++|.+.+..|... ...|++|+++
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls 205 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLS 205 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECC
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECc
Confidence 8888888888876 245677888888888877667787777776 78888888877665554433 1125555555
Q ss_pred ccCCc-cCCcc-----------------------cccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCC
Q 025516 187 GTAIE-ELPSS-----------------------FELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLP 242 (251)
Q Consensus 187 ~n~i~-~lp~~-----------------------~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p 242 (251)
+|.++ ..|.. +..+++|+.|++++|.+.+.+|..++.+++|++|++++|++.+.+|
T Consensus 206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred CCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence 55554 23333 4444555555555555544555555555555555555555555555
Q ss_pred h
Q 025516 243 D 243 (251)
Q Consensus 243 ~ 243 (251)
.
T Consensus 286 ~ 286 (313)
T 1ogq_A 286 Q 286 (313)
T ss_dssp C
T ss_pred C
Confidence 4
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=5.3e-25 Score=181.47 Aligned_cols=202 Identities=18% Similarity=0.162 Sum_probs=143.6
Q ss_pred CCceEEEEeec-CCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCC-Cc
Q 025516 35 TEKIEGICLDL-SKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH-SA 112 (251)
Q Consensus 35 ~~~~~~~~l~~-~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l 112 (251)
...++.+.+.. +.+. ...|..|+++++|++|++++|.+.+..+..+..+.+++.++++.|.+.+ .+|..+ .+
T Consensus 75 l~~L~~L~L~~~n~l~--~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l 148 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLV--GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG----TLPPSISSL 148 (313)
T ss_dssp CTTCSEEEEEEETTEE--SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES----CCCGGGGGC
T ss_pred CCCCCeeeCCCCCccc--ccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCC----cCChHHhcC
Confidence 44556666652 4433 2336678888888888888888877677777777777777777766664 233332 34
Q ss_pred CCceEeecCCCccc-----cccCcC-C-----------------------ccEEEcCCCcCCccccCccccCCCccEEec
Q 025516 113 EKLMFLEVPNSDIE-----QLWNSV-K-----------------------LVILNLSGSKSLKSLPAGIFNLEFLTELDL 163 (251)
Q Consensus 113 ~~L~~L~l~~n~i~-----~l~~~~-~-----------------------L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 163 (251)
++|++|++++|++. .+..+. + |++|++++|.+.+..|..++.+++|++|++
T Consensus 149 ~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 228 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228 (313)
T ss_dssp TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEEC
T ss_pred CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEEC
Confidence 55555555555543 122232 3 555555555555555666677778888888
Q ss_pred CCCCCCCCCCccc-cCCccEEEccccCCc-cCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCC
Q 025516 164 SGCSKLKRLPEIS-SGNIGQLFLSGTAIE-ELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRL 241 (251)
Q Consensus 164 ~~n~~~~~~~~~~-~~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 241 (251)
++|.+.+..+... +++|++|++++|.++ .+|..+..+++|+.|++++|++.+.+|.. +.+++|+.+++++|+.+...
T Consensus 229 ~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 229 AKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp CSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred CCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence 8887776666543 789999999999998 78999999999999999999999899886 89999999999999866555
Q ss_pred Ch
Q 025516 242 PD 243 (251)
Q Consensus 242 p~ 243 (251)
|.
T Consensus 308 p~ 309 (313)
T 1ogq_A 308 PL 309 (313)
T ss_dssp TS
T ss_pred CC
Confidence 53
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=2.2e-24 Score=197.52 Aligned_cols=191 Identities=21% Similarity=0.320 Sum_probs=116.7
Q ss_pred chhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCC-CcCCceEeecCCCccc-----cc
Q 025516 55 PNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH-SAEKLMFLEVPNSDIE-----QL 128 (251)
Q Consensus 55 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l~~L~~L~l~~n~i~-----~l 128 (251)
|..|+++++|+.|++++|.+.+..+..+..+..++.++++.|.+.+ .+|..+ .+++|++|++++|++. .+
T Consensus 435 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 510 (768)
T 3rgz_A 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG----EIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS----CCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred cHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC----cCCHHHhcCCCCCEEEccCCccCCcCChHH
Confidence 4444555555555555555544444444444444444444443333 334333 4667777777777664 24
Q ss_pred cCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--------------------------------
Q 025516 129 WNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-------------------------------- 176 (251)
Q Consensus 129 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-------------------------------- 176 (251)
..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|...
T Consensus 511 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (768)
T 3rgz_A 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA 590 (768)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSS
T ss_pred hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccc
Confidence 456667777777777666677767777777777777766554444211
Q ss_pred ----------------------------------------cCCccEEEccccCCc-cCCcccccCccCCEEeccCCcCCc
Q 025516 177 ----------------------------------------SGNIGQLFLSGTAIE-ELPSSFELLLRLWLLDLSDCKRLK 215 (251)
Q Consensus 177 ----------------------------------------~~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~n~~~~ 215 (251)
++.|+.|++++|+++ .+|..++.+++|+.|++++|.+.+
T Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 670 (768)
T 3rgz_A 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670 (768)
T ss_dssp EEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred ccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCC
Confidence 235667777777776 566677777777777777777777
Q ss_pred cCcccccCCCCCCEEeccCCcCCCCCChhhhhcc
Q 025516 216 SLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYR 249 (251)
Q Consensus 216 ~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~ 249 (251)
.+|..++.+++|+.|++++|++.+.+|..++.++
T Consensus 671 ~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~ 704 (768)
T 3rgz_A 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCC
T ss_pred CCChHHhCCCCCCEEECCCCcccCcCChHHhCCC
Confidence 7777777777777777777777777777666554
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=5.1e-24 Score=195.11 Aligned_cols=204 Identities=21% Similarity=0.232 Sum_probs=172.8
Q ss_pred CCceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCC-CcC
Q 025516 35 TEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH-SAE 113 (251)
Q Consensus 35 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l~ 113 (251)
..+++.+.+..+.+. ...|..|..+++|+.|++++|.+.+..+..+..+..++.++++.|.+.+ .+|..+ .++
T Consensus 441 l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~----~~p~~~~~l~ 514 (768)
T 3rgz_A 441 LSKLRDLKLWLNMLE--GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG----EIPKWIGRLE 514 (768)
T ss_dssp CTTCCEEECCSSCCC--SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS----CCCGGGGGCT
T ss_pred CCCCCEEECCCCccc--CcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCC----cCChHHhcCC
Confidence 344555555554433 3447889999999999999999999888888888888888887777765 566555 689
Q ss_pred CceEeecCCCccc-----cccCcCCccEEEcCCCcCCccccCcc------------------------------------
Q 025516 114 KLMFLEVPNSDIE-----QLWNSVKLVILNLSGSKSLKSLPAGI------------------------------------ 152 (251)
Q Consensus 114 ~L~~L~l~~n~i~-----~l~~~~~L~~L~l~~n~~~~~~~~~~------------------------------------ 152 (251)
+|++|++++|++. .+..+++|++|++++|.+.+.+|..+
T Consensus 515 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594 (768)
T ss_dssp TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccc
Confidence 9999999999986 46678899999999998776666433
Q ss_pred ----------------------------------ccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCc-cCCc
Q 025516 153 ----------------------------------FNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIE-ELPS 195 (251)
Q Consensus 153 ----------------------------------~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~-~lp~ 195 (251)
+.+++|++|++++|.+.+.+|..+ ++.|+.|++++|.++ .+|.
T Consensus 595 ~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~ 674 (768)
T 3rgz_A 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 674 (768)
T ss_dssp ECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred ccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh
Confidence 335779999999999999999765 899999999999999 8999
Q ss_pred ccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChh
Q 025516 196 SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDR 244 (251)
Q Consensus 196 ~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~ 244 (251)
.++.+++|+.|++++|++.+.+|..++.+++|++|++++|++.|.+|..
T Consensus 675 ~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 675 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp GGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 9999999999999999999999999999999999999999999999975
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=2.7e-23 Score=172.33 Aligned_cols=183 Identities=22% Similarity=0.257 Sum_probs=156.6
Q ss_pred cCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCC-CcCCceEeecCCCccccc----cCcCCc
Q 025516 60 KMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH-SAEKLMFLEVPNSDIEQL----WNSVKL 134 (251)
Q Consensus 60 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l~~L~~L~l~~n~i~~l----~~~~~L 134 (251)
...+++.|++++|.+.. .+..+..+.+++.++++. +.+..+|..+ .+++|++|++++|++..+ ..+++|
T Consensus 79 ~~~~l~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~-----n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L 152 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDA-----AGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRL 152 (328)
T ss_dssp TSTTCCEEEEESSCCSS-CCSCGGGGTTCSEEEEES-----SCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTC
T ss_pred cccceeEEEccCCCchh-cChhhhhCCCCCEEECCC-----CCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCC
Confidence 45899999999999883 455566666665555554 4555677765 689999999999998754 467899
Q ss_pred cEEEcCCCcCCccccCcccc---------CCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCcccccCccC
Q 025516 135 VILNLSGSKSLKSLPAGIFN---------LEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPSSFELLLRL 203 (251)
Q Consensus 135 ~~L~l~~n~~~~~~~~~~~~---------l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~~~~~l~~L 203 (251)
++|++++|...+.+|..++. +++|++|++++|.+. .+|... +++|++|++++|.++.+|..++.+++|
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L 231 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKL 231 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTC
T ss_pred CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCC
Confidence 99999999889999987764 999999999999876 666544 889999999999999999999999999
Q ss_pred CEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhcc
Q 025516 204 WLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYR 249 (251)
Q Consensus 204 ~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~ 249 (251)
+.|++++|.+.+.+|..++.+++|++|++++|+..+.+|..++.++
T Consensus 232 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~ 277 (328)
T 4fcg_A 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT 277 (328)
T ss_dssp CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT
T ss_pred CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC
Confidence 9999999999999999999999999999999999999999887765
No 7
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=1.4e-22 Score=164.56 Aligned_cols=202 Identities=19% Similarity=0.181 Sum_probs=154.1
Q ss_pred CCceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCC-CCCC-Cc
Q 025516 35 TEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSL-PSNH-SA 112 (251)
Q Consensus 35 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~-~~~~-~l 112 (251)
..+++.+.+..+.+..+ .+..|..+++|++|++++|.+.+..+..+..+..|+.++++.|. .++.+ +..+ .+
T Consensus 31 ~~~l~~L~l~~n~i~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~----~l~~~~~~~~~~l 104 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHV--PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA----QLRSVDPATFHGL 104 (285)
T ss_dssp CTTCSEEECTTSCCCEE--CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT----TCCCCCTTTTTTC
T ss_pred CCCceEEEeeCCcCCcc--CHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC----CccccCHHHhcCC
Confidence 34566777766665544 36678899999999999998887777777777776666665554 03334 2333 68
Q ss_pred CCceEeecCCCccccc-----cCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEc
Q 025516 113 EKLMFLEVPNSDIEQL-----WNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFL 185 (251)
Q Consensus 113 ~~L~~L~l~~n~i~~l-----~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l 185 (251)
++|++|++++|++..+ ..+++|++|++++|.+.+..+..++++++|++|++++|.+.+..+..+ +++|++|++
T Consensus 105 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 184 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184 (285)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEEC
Confidence 8999999999988643 457789999999988666555668889999999999997665444323 789999999
Q ss_pred cccCCccC-CcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCC
Q 025516 186 SGTAIEEL-PSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLP 242 (251)
Q Consensus 186 ~~n~i~~l-p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p 242 (251)
++|.++.+ |..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++....+
T Consensus 185 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred CCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 99999865 6678889999999999999877666778999999999999988775544
No 8
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=3.3e-22 Score=172.65 Aligned_cols=204 Identities=22% Similarity=0.197 Sum_probs=159.5
Q ss_pred ceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCC-C-CcCC
Q 025516 37 KIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSN-H-SAEK 114 (251)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~-~-~l~~ 114 (251)
.++.+.+..+.+.. +.+..|.++++|+.|++++|.+.+..+..|..+.+|+.++|+.|.+. .++.. + .+++
T Consensus 76 ~l~~L~L~~n~i~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~ 148 (452)
T 3zyi_A 76 NTRYLNLMENNIQM--IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-----VIPSGAFEYLSK 148 (452)
T ss_dssp TCSEEECCSSCCCE--ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-----BCCTTTSSSCTT
T ss_pred CccEEECcCCcCce--ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-----ccChhhhcccCC
Confidence 45555555555443 44778999999999999999998877778888777776666666554 45443 3 5899
Q ss_pred ceEeecCCCccccc-----cCcCCccEEEcCCCcCCccccC-ccccCCCccEEecCCCCCCCCCCccc-cCCccEEEccc
Q 025516 115 LMFLEVPNSDIEQL-----WNSVKLVILNLSGSKSLKSLPA-GIFNLEFLTELDLSGCSKLKRLPEIS-SGNIGQLFLSG 187 (251)
Q Consensus 115 L~~L~l~~n~i~~l-----~~~~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~~ 187 (251)
|++|++++|++..+ ..+++|++|++++|...+.++. .+.++++|++|++++|.+.. +|... +++|++|++++
T Consensus 149 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~ 227 (452)
T 3zyi_A 149 LRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPNLTPLVGLEELEMSG 227 (452)
T ss_dssp CCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCCCTTCTTCCEEECTT
T ss_pred CCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cccccccccccEEECcC
Confidence 99999999998754 4578999999999777777665 57789999999999997654 45444 88999999999
Q ss_pred cCCccC-CcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhc
Q 025516 188 TAIEEL-PSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASY 248 (251)
Q Consensus 188 n~i~~l-p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l 248 (251)
|.++.+ |..+.++++|+.|++++|++.+..|..+..+++|+.|++++|.+.+..+..++.+
T Consensus 228 N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 228 NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp SCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred CcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 999976 5578899999999999999888888889999999999999987765444444443
No 9
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=3.6e-22 Score=171.82 Aligned_cols=204 Identities=21% Similarity=0.227 Sum_probs=158.2
Q ss_pred ceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCC-C-CcCC
Q 025516 37 KIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSN-H-SAEK 114 (251)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~-~-~l~~ 114 (251)
.++.+.+..+.+..+ .+..|.++++|+.|++++|.+....+..|..+.+|+.++|+.|.+. .++.. + .+++
T Consensus 65 ~l~~L~L~~n~i~~~--~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~ 137 (440)
T 3zyj_A 65 NTRLLNLHENQIQII--KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-----TIPNGAFVYLSK 137 (440)
T ss_dssp TCSEEECCSCCCCEE--CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS-----SCCTTTSCSCSS
T ss_pred CCcEEEccCCcCCee--CHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC-----eeCHhHhhcccc
Confidence 345555655555443 4678999999999999999998877777877777766666655554 45542 3 6899
Q ss_pred ceEeecCCCcccc-----ccCcCCccEEEcCCCcCCccccC-ccccCCCccEEecCCCCCCCCCCccc-cCCccEEEccc
Q 025516 115 LMFLEVPNSDIEQ-----LWNSVKLVILNLSGSKSLKSLPA-GIFNLEFLTELDLSGCSKLKRLPEIS-SGNIGQLFLSG 187 (251)
Q Consensus 115 L~~L~l~~n~i~~-----l~~~~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~~ 187 (251)
|++|++++|++.. +..+++|++|++++|...+.++. .+.++++|++|++++|.+. .+|... +++|++|++++
T Consensus 138 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~ 216 (440)
T 3zyj_A 138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSG 216 (440)
T ss_dssp CCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCCCTTCSSCCEEECTT
T ss_pred CceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccccCCCcccCEEECCC
Confidence 9999999999875 44578999999999776776665 5778999999999999765 455544 78999999999
Q ss_pred cCCccC-CcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhc
Q 025516 188 TAIEEL-PSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASY 248 (251)
Q Consensus 188 n~i~~l-p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l 248 (251)
|.++.+ |..+.++++|+.|++++|++....+..+..+++|+.|++++|++.+..+..++.+
T Consensus 217 N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred CccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 999876 5678899999999999999888888889999999999999987775444444443
No 10
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.88 E-value=6.4e-23 Score=169.25 Aligned_cols=209 Identities=15% Similarity=0.131 Sum_probs=161.4
Q ss_pred CCCceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeecc-------------
Q 025516 34 GTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHG------------- 100 (251)
Q Consensus 34 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~------------- 100 (251)
...+++.+.+..+.+.. +.+..|.++++|+.|++++|.+.+..+ +..+.+++.++++.|.+.+
T Consensus 32 ~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~ 107 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQ--ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAA 107 (317)
T ss_dssp TGGGCSEEECTTSCCCC--CCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECC
T ss_pred cCCCCCEEECcCCccCc--CCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECC
Confidence 45577777777766554 447789999999999999998876443 6677777777777666543
Q ss_pred -CCCCCCCCCCCcCCceEeecCCCccccc-----cCcCCccEEEcCCCcCCccccCccc-cCCCccEEecCCCCCCCCCC
Q 025516 101 -YPLKSLPSNHSAEKLMFLEVPNSDIEQL-----WNSVKLVILNLSGSKSLKSLPAGIF-NLEFLTELDLSGCSKLKRLP 173 (251)
Q Consensus 101 -~~~~~~~~~~~l~~L~~L~l~~n~i~~l-----~~~~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~ 173 (251)
+.+..++.. .+++|++|++++|++..+ ..+++|++|++++|.+.+..+..+. .+++|++|++++|.+....+
T Consensus 108 ~n~l~~~~~~-~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 186 (317)
T 3o53_A 108 NNNISRVSCS-RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186 (317)
T ss_dssp SSCCSEEEEC-CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred CCccCCcCcc-ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc
Confidence 333333221 357789999999988754 3467899999999987776666664 68999999999998765533
Q ss_pred ccccCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCC-CCCChhhhhc
Q 025516 174 EISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNL-QRLPDRLASY 248 (251)
Q Consensus 174 ~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~-~~~p~~l~~l 248 (251)
...+++|++|++++|.++.+|..+..+++|+.|++++|++. .+|..+..+++|+.|++++|++. +.+|.+++.+
T Consensus 187 ~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~ 261 (317)
T 3o53_A 187 QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (317)
T ss_dssp CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTC
T ss_pred ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhcc
Confidence 44488999999999999999888999999999999999876 57888999999999999999887 6666666554
No 11
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=1.1e-22 Score=166.82 Aligned_cols=202 Identities=21% Similarity=0.246 Sum_probs=108.7
Q ss_pred ceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCC--ccccccCCcceecceeEEe-----------------
Q 025516 37 KIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGEN--RCKVSHLQDLRFAEVKYLH----------------- 97 (251)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~l~~l~~l~~l~L~~~~----------------- 97 (251)
.++.+.+..+.+. .+.+..|.++++|+.|++++|.+.... +..+..+.+++.++++.|.
T Consensus 29 ~l~~L~L~~n~l~--~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 29 SATRLELESNKLQ--SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 106 (306)
T ss_dssp TCCEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEE
T ss_pred CCCEEECCCCccC--ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEE
Confidence 4555555555444 233445666677777777766655321 1222223333333332222
Q ss_pred -eccCCCCCCCC---CCCcCCceEeecCCCcccc-----ccCcCCccEEEcCCCcCCc-cccCccccCCCccEEecCCCC
Q 025516 98 -WHGYPLKSLPS---NHSAEKLMFLEVPNSDIEQ-----LWNSVKLVILNLSGSKSLK-SLPAGIFNLEFLTELDLSGCS 167 (251)
Q Consensus 98 -l~~~~~~~~~~---~~~l~~L~~L~l~~n~i~~-----l~~~~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~ 167 (251)
++++.+..++. ...+++|++|++++|.+.. +..+++|++|++++|.+.+ ..|..++.+++|++|++++|.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 22222222222 1145666666666666542 3345566666666665444 355556666666666666666
Q ss_pred CCCCCCccc--cCCccEEEccccCCccCCc-ccccCccCCEEeccCCcCCccCcccccCCC-CCCEEeccCCcCCCC
Q 025516 168 KLKRLPEIS--SGNIGQLFLSGTAIEELPS-SFELLLRLWLLDLSDCKRLKSLPSSLCKLK-SLELLSLRGCSNLQR 240 (251)
Q Consensus 168 ~~~~~~~~~--~~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~-~L~~L~l~~n~~~~~ 240 (251)
+.+..+..+ +++|++|++++|.++.++. .+..+++|+.|++++|++.+..|..+..++ +|++|++++|++.+.
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 554444332 5666666666666665544 455666666666666666666666666663 666666666665543
No 12
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=1.6e-21 Score=161.57 Aligned_cols=202 Identities=17% Similarity=0.198 Sum_probs=128.5
Q ss_pred CceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCc
Q 025516 36 EKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKL 115 (251)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L 115 (251)
..++.+.+..+.+. .+.+..|.++++|++|++++|.+.+..+..+..+.+|+.++++.|.+ +.+|.... ++|
T Consensus 52 ~~l~~L~L~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-----~~l~~~~~-~~L 123 (330)
T 1xku_A 52 PDTALLDLQNNKIT--EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-----KELPEKMP-KTL 123 (330)
T ss_dssp TTCCEEECCSSCCC--CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC-----SBCCSSCC-TTC
T ss_pred CCCeEEECCCCcCC--EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcC-----CccChhhc-ccc
Confidence 34555555555544 34466789999999999999999887777787777766666655544 44554432 678
Q ss_pred eEeecCCCcccc-----ccCcCCccEEEcCCCcCCc--cccCccccCCCccEEecCCCCCCCCCCccccCCccEEEcccc
Q 025516 116 MFLEVPNSDIEQ-----LWNSVKLVILNLSGSKSLK--SLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGT 188 (251)
Q Consensus 116 ~~L~l~~n~i~~-----l~~~~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n 188 (251)
++|++++|++.. +..+++|++|++++|.+.. ..+..++++++|++|++++|.+. .+|....++|++|++++|
T Consensus 124 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~L~~L~l~~n 202 (330)
T 1xku_A 124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGN 202 (330)
T ss_dssp CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCCTTCSEEECTTS
T ss_pred cEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCccccccCCEEECCCC
Confidence 888888887764 3456778888888776542 45566677777777777777643 344433456666666666
Q ss_pred CCccC-CcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhh
Q 025516 189 AIEEL-PSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLAS 247 (251)
Q Consensus 189 ~i~~l-p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~ 247 (251)
.++.+ |..+..+++|+.|++++|.+.+..+..++.+++|++|++++|.+. .+|.+++.
T Consensus 203 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence 66544 344555666666666666555544445555566666666655433 45555443
No 13
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=1.9e-22 Score=175.66 Aligned_cols=209 Identities=15% Similarity=0.131 Sum_probs=162.6
Q ss_pred CCCceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeecc-------------
Q 025516 34 GTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHG------------- 100 (251)
Q Consensus 34 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~------------- 100 (251)
..++++.+.+..+.+.. +.+..|+.+++|++|++++|.+.+..+ +..+.+|+.++|++|.+.+
T Consensus 32 ~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~ 107 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQ--ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAA 107 (487)
T ss_dssp TGGGCCEEECCSSCCCC--CCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECC
T ss_pred cCCCccEEEeeCCcCCC--CCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECc
Confidence 34478888787776654 457899999999999999999886544 7777777777777666543
Q ss_pred -CCCCCCCCCCCcCCceEeecCCCccccc-----cCcCCccEEEcCCCcCCccccCccc-cCCCccEEecCCCCCCCCCC
Q 025516 101 -YPLKSLPSNHSAEKLMFLEVPNSDIEQL-----WNSVKLVILNLSGSKSLKSLPAGIF-NLEFLTELDLSGCSKLKRLP 173 (251)
Q Consensus 101 -~~~~~~~~~~~l~~L~~L~l~~n~i~~l-----~~~~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~ 173 (251)
+.+..++.. .+++|+.|++++|.+..+ ..+++|++|++++|.+.+..|..+. .+++|++|++++|.+.+..+
T Consensus 108 ~N~l~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~ 186 (487)
T 3oja_A 108 NNNISRVSCS-RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186 (487)
T ss_dssp SSCCCCEEEC-CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred CCcCCCCCcc-ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc
Confidence 333333221 357788999999988643 4567899999999988777777776 68999999999998776644
Q ss_pred ccccCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCC-CCCChhhhhc
Q 025516 174 EISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNL-QRLPDRLASY 248 (251)
Q Consensus 174 ~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~-~~~p~~l~~l 248 (251)
...+++|+.|++++|.++.+|+.+..+++|+.|++++|.+. .+|..++.+++|+.|++++|++. +.+|.+++.+
T Consensus 187 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l 261 (487)
T 3oja_A 187 QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (487)
T ss_dssp CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTC
T ss_pred cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhC
Confidence 44588999999999999999888889999999999999976 47888899999999999998887 5566655543
No 14
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=7.4e-22 Score=159.63 Aligned_cols=202 Identities=16% Similarity=0.083 Sum_probs=159.5
Q ss_pred CceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCc
Q 025516 36 EKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKL 115 (251)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L 115 (251)
..++.+.+..+.+..+ .+..|.++++|++|++++|.+....+..+..+.+++.++++.|.+.+.....+ ..+++|
T Consensus 28 ~~l~~L~ls~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L 102 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHL--GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF---SGLSSL 102 (276)
T ss_dssp TTCCEEECTTCCCCEE--CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT---TTCTTC
T ss_pred CCccEEECCCCccccc--CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhh---cCCccc
Confidence 3567777766665544 36688999999999999999988777778777777777666666554222222 268999
Q ss_pred eEeecCCCcccc-----ccCcCCccEEEcCCCcCCcc-ccCccccCCCccEEecCCCCCCCCCCccc--cCCcc----EE
Q 025516 116 MFLEVPNSDIEQ-----LWNSVKLVILNLSGSKSLKS-LPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIG----QL 183 (251)
Q Consensus 116 ~~L~l~~n~i~~-----l~~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~----~L 183 (251)
++|++++|.+.. +..+++|++|++++|.+.+. +|..++++++|++|++++|.+.+..+... +..|+ +|
T Consensus 103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L 182 (276)
T 2z62_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182 (276)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEE
T ss_pred cEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceee
Confidence 999999999864 45678999999999986653 68889999999999999998776544433 44555 89
Q ss_pred EccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCC
Q 025516 184 FLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLP 242 (251)
Q Consensus 184 ~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p 242 (251)
++++|.++.++.......+|+.|++++|.+.+..+..+..+++|++|++++|++....|
T Consensus 183 ~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 183 DLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp ECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred ecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 99999999888776666799999999999876666667999999999999999988776
No 15
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.87 E-value=1.7e-21 Score=158.24 Aligned_cols=185 Identities=17% Similarity=0.114 Sum_probs=153.3
Q ss_pred CCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCC-CcCCceEeecCCCc-ccc-----ccCcCC
Q 025516 61 MRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH-SAEKLMFLEVPNSD-IEQ-----LWNSVK 133 (251)
Q Consensus 61 l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l~~L~~L~l~~n~-i~~-----l~~~~~ 133 (251)
.++|+.|++++|.+....+..+..+.+++.++++.+.+.+.. +..+ .+++|++|++++|. +.. +..+++
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~ 106 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID----AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTT
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC----HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcC
Confidence 579999999999999877777888888777777766665422 3333 68999999999997 654 456789
Q ss_pred ccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCc-ccccCccCCEEeccC
Q 025516 134 LVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPS-SFELLLRLWLLDLSD 210 (251)
Q Consensus 134 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~ 210 (251)
|++|++++|.+.+..|..++++++|++|++++|.+....+..+ +++|++|++++|.++.+|. .+..+++|+.|++++
T Consensus 107 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186 (285)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCC
Confidence 9999999999777778888999999999999998776555433 8899999999999998876 488999999999999
Q ss_pred CcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhcc
Q 025516 211 CKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYR 249 (251)
Q Consensus 211 n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~ 249 (251)
|.+.+..|..++.+++|+.|++++|.+.+..|..++.++
T Consensus 187 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 225 (285)
T 1ozn_A 187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225 (285)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred CcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc
Confidence 999888899999999999999999887764445566543
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=1e-21 Score=169.44 Aligned_cols=113 Identities=22% Similarity=0.081 Sum_probs=68.0
Q ss_pred CcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccC-CcccccCccCCEE
Q 025516 130 NSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEEL-PSSFELLLRLWLL 206 (251)
Q Consensus 130 ~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L 206 (251)
.+++|++|++++|.+.+..|..++++++|++|++++|.+.+..+..+ +++|++|++++|.++.+ |..+..+++|+.|
T Consensus 297 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 376 (455)
T 3v47_A 297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL 376 (455)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEE
Confidence 34556666666665554445555566666666666665544433332 56666666666666644 4456666666666
Q ss_pred eccCCcCCccCcccccCCCCCCEEeccCCcCCCCCC
Q 025516 207 DLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLP 242 (251)
Q Consensus 207 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p 242 (251)
++++|++.+..+..++.+++|++|++++|++.+..|
T Consensus 377 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 377 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 666666555444455666667777777666666665
No 17
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=1.5e-21 Score=161.88 Aligned_cols=195 Identities=20% Similarity=0.203 Sum_probs=115.3
Q ss_pred CceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCc
Q 025516 36 EKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKL 115 (251)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L 115 (251)
..++.+.+..+.+.. +.+..|.++++|++|++++|.+.+..+..+..+.+|+.++++.|.+ ..+|.... ++|
T Consensus 54 ~~l~~L~l~~n~i~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-----~~l~~~~~-~~L 125 (332)
T 2ft3_A 54 PDTTLLDLQNNDISE--LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL-----VEIPPNLP-SSL 125 (332)
T ss_dssp TTCCEEECCSSCCCE--ECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCC-----CSCCSSCC-TTC
T ss_pred CCCeEEECCCCcCCc--cCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcC-----CccCcccc-ccC
Confidence 345555555555443 3366788889999999998888877677777776666555554443 34554433 677
Q ss_pred eEeecCCCcccc-----ccCcCCccEEEcCCCcCCc--cccCccccC--------------------CCccEEecCCCCC
Q 025516 116 MFLEVPNSDIEQ-----LWNSVKLVILNLSGSKSLK--SLPAGIFNL--------------------EFLTELDLSGCSK 168 (251)
Q Consensus 116 ~~L~l~~n~i~~-----l~~~~~L~~L~l~~n~~~~--~~~~~~~~l--------------------~~L~~L~l~~n~~ 168 (251)
++|++++|++.. +..+++|++|++++|.+.. ..|..++.+ ++|++|++++|.+
T Consensus 126 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i 205 (332)
T 2ft3_A 126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKI 205 (332)
T ss_dssp CEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCC
T ss_pred CEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcC
Confidence 777777777653 3345677777777776532 334444444 3444444444444
Q ss_pred CCCCCccc--cCCccEEEccccCCccCCc-ccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCC
Q 025516 169 LKRLPEIS--SGNIGQLFLSGTAIEELPS-SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQ 239 (251)
Q Consensus 169 ~~~~~~~~--~~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~ 239 (251)
.+..+... +++|+.|++++|.++.++. .+..+++|+.|++++|++. .+|..++.+++|++|++++|++.+
T Consensus 206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK 278 (332)
T ss_dssp CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCB
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCc
Confidence 33332222 4556666666666665443 4556666666666666543 555556666666666666655443
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=2.1e-21 Score=167.42 Aligned_cols=72 Identities=21% Similarity=0.107 Sum_probs=38.5
Q ss_pred cCCccEEEccccCCccC-CcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhc
Q 025516 177 SGNIGQLFLSGTAIEEL-PSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASY 248 (251)
Q Consensus 177 ~~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l 248 (251)
+++|++|++++|.++.+ |..+..+++|+.|++++|.+.+..|..++.+++|++|++++|.+.+..|..++.+
T Consensus 298 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 370 (455)
T 3v47_A 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370 (455)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccc
Confidence 34455555555555533 2344555555555555555544445555566666666666655555445544443
No 19
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=2e-21 Score=159.36 Aligned_cols=188 Identities=16% Similarity=0.115 Sum_probs=129.1
Q ss_pred hhhcCCCccEEEeecccCCCCCc-cccccCCcceecceeEEeeccCCCCCCCCCC-CcCCceEeecCCCcccc------c
Q 025516 57 TFAKMRKLRFLKFYSSSFNGENR-CKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH-SAEKLMFLEVPNSDIEQ------L 128 (251)
Q Consensus 57 ~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l~~L~~L~l~~n~i~~------l 128 (251)
.+.++++|+.|++++|.+.+... ..+..+..++.++++.|.+.+ ..+..+ .+++|++|++++|.+.+ +
T Consensus 96 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 171 (306)
T 2z66_A 96 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV----AFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 171 (306)
T ss_dssp EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE----CSTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc----cchhhcccCcCCCEEECCCCccccccchhHH
Confidence 35556666666666665554333 344455555544444444433 222333 58999999999998864 4
Q ss_pred cCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCcc-CCcccccCc-cCC
Q 025516 129 WNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEE-LPSSFELLL-RLW 204 (251)
Q Consensus 129 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~-lp~~~~~l~-~L~ 204 (251)
..+++|++|++++|.+.+..|..++++++|++|++++|.+.+..+... +++|++|++++|.++. .|..+..++ +|+
T Consensus 172 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~ 251 (306)
T 2z66_A 172 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 251 (306)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCC
T ss_pred hhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCC
Confidence 567899999999998777778889999999999999998776544333 7899999999999985 455777774 999
Q ss_pred EEeccCCcCCccCc--ccccCCCCCCEEeccCCcCCCCCChhhhhc
Q 025516 205 LLDLSDCKRLKSLP--SSLCKLKSLELLSLRGCSNLQRLPDRLASY 248 (251)
Q Consensus 205 ~L~l~~n~~~~~~p--~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l 248 (251)
.|++++|++....+ ....-+...+.+.+..+......|+.+...
T Consensus 252 ~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~ 297 (306)
T 2z66_A 252 FLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM 297 (306)
T ss_dssp EEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTC
T ss_pred EEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCc
Confidence 99999999875432 111222334445556666777777776543
No 20
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=1.9e-21 Score=168.81 Aligned_cols=204 Identities=18% Similarity=0.139 Sum_probs=108.7
Q ss_pred CCCceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeecc-------------
Q 025516 34 GTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHG------------- 100 (251)
Q Consensus 34 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~------------- 100 (251)
...+++.+.+..+.+..+ .+..|.++++|++|++++|.+....+..+..+.+|+.++++.|.+..
T Consensus 54 ~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 131 (477)
T 2id5_A 54 SFPHLEELELNENIVSAV--EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK 131 (477)
T ss_dssp TCTTCCEEECTTSCCCEE--CTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCCEEECCCCccCEe--ChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCC
Confidence 344556655555544332 35566677777777777776665555555555555544444443322
Q ss_pred ------CCCCCCCC-CC-CcCCceEeecCCCcccc-----ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCC
Q 025516 101 ------YPLKSLPS-NH-SAEKLMFLEVPNSDIEQ-----LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCS 167 (251)
Q Consensus 101 ------~~~~~~~~-~~-~l~~L~~L~l~~n~i~~-----l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 167 (251)
+.+..++. .+ ++++|+.|++++|.+.. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.
T Consensus 132 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~ 211 (477)
T 2id5_A 132 SLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211 (477)
T ss_dssp EEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCT
T ss_pred EEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCc
Confidence 22222211 11 34555555555555442 2234455555555555444334445555556666665554
Q ss_pred CCCCCCccc--------------------------cCCccEEEccccCCccCCc-ccccCccCCEEeccCCcCCccCccc
Q 025516 168 KLKRLPEIS--------------------------SGNIGQLFLSGTAIEELPS-SFELLLRLWLLDLSDCKRLKSLPSS 220 (251)
Q Consensus 168 ~~~~~~~~~--------------------------~~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~p~~ 220 (251)
..+.++... +++|+.|++++|.++.++. .+..+++|+.|++++|++.+..|..
T Consensus 212 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 291 (477)
T 2id5_A 212 YLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYA 291 (477)
T ss_dssp TCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTT
T ss_pred cccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHH
Confidence 443333211 4455666666666554443 3456666666666666666655666
Q ss_pred ccCCCCCCEEeccCCcCCC
Q 025516 221 LCKLKSLELLSLRGCSNLQ 239 (251)
Q Consensus 221 ~~~l~~L~~L~l~~n~~~~ 239 (251)
+..+++|++|++++|.+.+
T Consensus 292 ~~~l~~L~~L~L~~N~l~~ 310 (477)
T 2id5_A 292 FRGLNYLRVLNVSGNQLTT 310 (477)
T ss_dssp BTTCTTCCEEECCSSCCSC
T ss_pred hcCcccCCEEECCCCcCce
Confidence 7777777777777765554
No 21
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.86 E-value=1.9e-21 Score=160.08 Aligned_cols=199 Identities=21% Similarity=0.198 Sum_probs=139.2
Q ss_pred CCCceEEEEeecCCcccccCCchhh--hcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCC-CCC
Q 025516 34 GTEKIEGICLDLSKVKEIPLNPNTF--AKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLP-SNH 110 (251)
Q Consensus 34 ~~~~~~~~~l~~~~~~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~-~~~ 110 (251)
...+++.+.+..+.+... .|..+ ..+++|++|++++|.+.+. +..+..+.......|++++++++.+..++ ..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~ 169 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGT--APPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV 169 (312)
T ss_dssp TTSCCCEEEEEEEBCBSC--CCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC
T ss_pred CcCCccEEEccCCcccch--hHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh
Confidence 456777777777665432 24443 7888888888888888876 55554441111123344444444444454 333
Q ss_pred -CcCCceEeecCCCccc-------cc--cCcCCccEEEcCCCcCCc--cccCc-cccCCCccEEecCCCCCCCCCCc--c
Q 025516 111 -SAEKLMFLEVPNSDIE-------QL--WNSVKLVILNLSGSKSLK--SLPAG-IFNLEFLTELDLSGCSKLKRLPE--I 175 (251)
Q Consensus 111 -~l~~L~~L~l~~n~i~-------~l--~~~~~L~~L~l~~n~~~~--~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~ 175 (251)
.+++|++|++++|++. .+ ..+++|++|++++|.+.+ .++.. +.++++|++|++++|.+.+..|. .
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 249 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh
Confidence 6889999999999853 22 677889999999987553 23322 34678999999999987776542 2
Q ss_pred c-cCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCC
Q 025516 176 S-SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQ 239 (251)
Q Consensus 176 ~-~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~ 239 (251)
. +++|++|++++|.++.+|..+. ++|+.|++++|++.+. |. +..+++|++|++++|++.+
T Consensus 250 ~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 250 DWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 2 6889999999999998888776 8899999999987655 66 8889999999999987765
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.86 E-value=8.3e-22 Score=176.94 Aligned_cols=187 Identities=17% Similarity=0.155 Sum_probs=149.2
Q ss_pred CchhhhcCCCccEEEeecccCCCC-----------------Cccccc--cCCcceecceeEEeeccCCCCCCCCCC-CcC
Q 025516 54 NPNTFAKMRKLRFLKFYSSSFNGE-----------------NRCKVS--HLQDLRFAEVKYLHWHGYPLKSLPSNH-SAE 113 (251)
Q Consensus 54 ~~~~~~~l~~L~~L~l~~n~~~~~-----------------~~~~l~--~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l~ 113 (251)
.|..|+++++|++|++++|.+++. .|..+. .+.+|+.++++.|.+.+ .+|..+ .++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~ 273 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT----KLPTFLKALP 273 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS----SCCTTTTTCS
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc----cChHHHhcCC
Confidence 367899999999999999999985 677777 88888888888877665 667665 689
Q ss_pred CceEeecCCCc-ccc------ccCc------CCccEEEcCCCcCCccccC--ccccCCCccEEecCCCCCCCCCCccc-c
Q 025516 114 KLMFLEVPNSD-IEQ------LWNS------VKLVILNLSGSKSLKSLPA--GIFNLEFLTELDLSGCSKLKRLPEIS-S 177 (251)
Q Consensus 114 ~L~~L~l~~n~-i~~------l~~~------~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~-~ 177 (251)
+|++|++++|+ +++ +..+ ++|++|++++|.+. .+|. .++++++|++|++++|.+.+.+|... +
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l 352 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSE 352 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEE
T ss_pred CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCC
Confidence 99999999998 653 3333 88999999999866 8888 89999999999999998877777332 6
Q ss_pred CCccEEEccccCCccCCcccccCcc-CCEEeccCCcCCccCcccccCCC--CCCEEeccCCcCCCCCChhhh
Q 025516 178 GNIGQLFLSGTAIEELPSSFELLLR-LWLLDLSDCKRLKSLPSSLCKLK--SLELLSLRGCSNLQRLPDRLA 246 (251)
Q Consensus 178 ~~L~~L~l~~n~i~~lp~~~~~l~~-L~~L~l~~n~~~~~~p~~~~~l~--~L~~L~l~~n~~~~~~p~~l~ 246 (251)
++|++|++++|.++.+|..++.+++ |+.|++++|.+. .+|..++.++ +|++|++++|.+.+.+|..++
T Consensus 353 ~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 423 (636)
T 4eco_A 353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423 (636)
T ss_dssp EEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSC
T ss_pred CCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhc
Confidence 7888888888888888887888888 888888888866 6777666544 777777777777777776655
No 23
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.86 E-value=6.1e-21 Score=171.30 Aligned_cols=207 Identities=21% Similarity=0.293 Sum_probs=132.2
Q ss_pred CceEEEEeecCCcccccCCch--hhhcCCCccEEEeecccCCCCCccccccCCcceecc-------------------ee
Q 025516 36 EKIEGICLDLSKVKEIPLNPN--TFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAE-------------------VK 94 (251)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~-------------------L~ 94 (251)
.+++.+.+..+.+.. + |. .|+++++|+.|++++|.+.+..+ .+..+..++.++ |+
T Consensus 305 ~~L~~L~L~~n~l~~--i-p~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~ 380 (636)
T 4eco_A 305 EKIQIIYIGYNNLKT--F-PVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVE 380 (636)
T ss_dssp GTCCEEECCSSCCSS--C-CCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCC
T ss_pred CCCCEEECCCCcCCc--c-CchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCc
Confidence 566777776666552 2 44 77888888888888888775555 554444443333 44
Q ss_pred EEeeccCCCCCCCCCCC---cCCceEeecCCCcccc-----cc-------CcCCccEEEcCCCcCCccccCccc-cCCCc
Q 025516 95 YLHWHGYPLKSLPSNHS---AEKLMFLEVPNSDIEQ-----LW-------NSVKLVILNLSGSKSLKSLPAGIF-NLEFL 158 (251)
Q Consensus 95 ~~~l~~~~~~~~~~~~~---l~~L~~L~l~~n~i~~-----l~-------~~~~L~~L~l~~n~~~~~~~~~~~-~l~~L 158 (251)
.++++++.+..+|..+. +.+|++|++++|.+.+ ++ .+.+|++|++++|.+. .+|..+. .+++|
T Consensus 381 ~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L 459 (636)
T 4eco_A 381 NLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPL 459 (636)
T ss_dssp EEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCC
T ss_pred EEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCC
Confidence 44555555555665442 2367777777776643 33 4446777777776644 4554433 46777
Q ss_pred cEEecCCCCCCCCCCccccC----------CccEEEccccCCccCCcccc--cCccCCEEeccCCcCCccCcccccCCCC
Q 025516 159 TELDLSGCSKLKRLPEISSG----------NIGQLFLSGTAIEELPSSFE--LLLRLWLLDLSDCKRLKSLPSSLCKLKS 226 (251)
Q Consensus 159 ~~L~l~~n~~~~~~~~~~~~----------~L~~L~l~~n~i~~lp~~~~--~l~~L~~L~l~~n~~~~~~p~~~~~l~~ 226 (251)
++|++++|.+. .+|...+. +|++|++++|.++.+|..+. .+++|+.|++++|++.+ +|..++.+++
T Consensus 460 ~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~ 537 (636)
T 4eco_A 460 SSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSST 537 (636)
T ss_dssp SEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSS
T ss_pred CEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCC
Confidence 77777777655 44443311 77777777777777777665 77777777777777665 6777777777
Q ss_pred CCEEec------cCCcCCCCCChhhhhcc
Q 025516 227 LELLSL------RGCSNLQRLPDRLASYR 249 (251)
Q Consensus 227 L~~L~l------~~n~~~~~~p~~l~~l~ 249 (251)
|++|++ ++|.+.+.+|.+++.++
T Consensus 538 L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~ 566 (636)
T 4eco_A 538 LKGFGIRNQRDAQGNRTLREWPEGITLCP 566 (636)
T ss_dssp CCEEECCSCBCTTCCBCCCCCCTTGGGCS
T ss_pred CCEEECCCCcccccCcccccChHHHhcCC
Confidence 777777 45666777777766654
No 24
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=2.2e-21 Score=156.70 Aligned_cols=196 Identities=20% Similarity=0.200 Sum_probs=109.6
Q ss_pred CceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCC-C-CcC
Q 025516 36 EKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSN-H-SAE 113 (251)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~-~-~l~ 113 (251)
.+++.+.+..+.+... ..+..+++|++|++++|.+.+. ..+..+.+|+.++++ ++.+..++.. + .++
T Consensus 41 ~~L~~L~l~~~~i~~~----~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~-----~n~l~~~~~~~~~~l~ 109 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSV----QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT-----GNQLQSLPNGVFDKLT 109 (272)
T ss_dssp TTCCEEECTTSCCCCC----TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT-----TSCCCCCCTTTTTTCT
T ss_pred cceeeeeeCCCCcccc----cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC-----CCccCccChhHhcCCc
Confidence 3444555544443322 2456677777777777766542 234444443333333 3333334432 1 466
Q ss_pred CceEeecCCCccccc-----cCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEcc
Q 025516 114 KLMFLEVPNSDIEQL-----WNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLS 186 (251)
Q Consensus 114 ~L~~L~l~~n~i~~l-----~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~ 186 (251)
+|++|++++|++..+ ..+++|++|++++|.+.+..+..++.+++|++|++++|.+.+..+... +++|++|+++
T Consensus 110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY 189 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECC
Confidence 666666666666532 345566666666666544444445566666666666666554444322 5666666666
Q ss_pred ccCCccCCcc-cccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhcc
Q 025516 187 GTAIEELPSS-FELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYR 249 (251)
Q Consensus 187 ~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~ 249 (251)
+|.++.+|.. +..+++|+.|++++|++.. .+++|+.++++.|.+.+.+|.+++.+.
T Consensus 190 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 190 QNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence 6666655543 4566666666666665442 344566666666666667776666543
No 25
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=3.9e-20 Score=149.15 Aligned_cols=176 Identities=19% Similarity=0.171 Sum_probs=144.4
Q ss_pred CCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCC--CcCCceEeecCCCccccc-----cCcCCc
Q 025516 62 RKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH--SAEKLMFLEVPNSDIEQL-----WNSVKL 134 (251)
Q Consensus 62 ~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~--~l~~L~~L~l~~n~i~~l-----~~~~~L 134 (251)
.+++.|++++|.+....+..+..+.+|+.++++.+. +..++... .+++|++|++++|.+..+ ..+++|
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-----l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 111 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-----LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNL 111 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-----CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-----cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCC
Confidence 689999999999988777777777776666665554 44565543 589999999999999754 457799
Q ss_pred cEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCc-ccccCccCCEEeccCC
Q 025516 135 VILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPS-SFELLLRLWLLDLSDC 211 (251)
Q Consensus 135 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n 211 (251)
++|++++|.+.+..+..++.+++|++|++++|.+.+..+..+ +++|++|++++|.++.+|. .+..+++|+.|++++|
T Consensus 112 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 112 AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCC
Confidence 999999998777777778899999999999998766554433 7899999999999998876 4788999999999999
Q ss_pred cCCccCcccccCCCCCCEEeccCCcCCCCCC
Q 025516 212 KRLKSLPSSLCKLKSLELLSLRGCSNLQRLP 242 (251)
Q Consensus 212 ~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p 242 (251)
++.+..+..+..+++|+.|++++|+.....+
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 192 QLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred cCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 9876666678999999999999998765543
No 26
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=1.5e-20 Score=159.19 Aligned_cols=204 Identities=15% Similarity=0.156 Sum_probs=103.7
Q ss_pred CceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCC-CC-CcC
Q 025516 36 EKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPS-NH-SAE 113 (251)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~-~~-~l~ 113 (251)
.+++.+.+..+.++.+ ++..|..+++|++|++++|.+....+..+..+.+++.++++.|.+.+ ++. .+ .++
T Consensus 45 ~~l~~l~l~~~~l~~l--~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~ 117 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKL--PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-----LPPHVFQNVP 117 (390)
T ss_dssp CCCSEEEEESCEESEE--CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCT
T ss_pred CCceEEEecCCchhhC--ChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCc-----CCHHHhcCCC
Confidence 3444454544443332 24456666666666666666665555555555555444444443332 222 11 355
Q ss_pred CceEeecCCCccccc-----cCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCC-----------------
Q 025516 114 KLMFLEVPNSDIEQL-----WNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKR----------------- 171 (251)
Q Consensus 114 ~L~~L~l~~n~i~~l-----~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~----------------- 171 (251)
+|++|++++|++..+ ..+++|++|++++|.+.+..|..++++++|++|++++|.+...
T Consensus 118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNL 197 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSC
T ss_pred CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeeccccc
Confidence 555555555555432 2344555555555554444444455555555555555543211
Q ss_pred -------------------------------------------CCcc-ccCCccEEEccccCCccC-CcccccCccCCEE
Q 025516 172 -------------------------------------------LPEI-SSGNIGQLFLSGTAIEEL-PSSFELLLRLWLL 206 (251)
Q Consensus 172 -------------------------------------------~~~~-~~~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L 206 (251)
.+.. .+++|++|++++|.++.+ |..+..+++|+.|
T Consensus 198 l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 277 (390)
T 3o6n_A 198 LSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 277 (390)
T ss_dssp CSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred ccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEE
Confidence 0101 134555666666655533 4455566666666
Q ss_pred eccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhc
Q 025516 207 DLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASY 248 (251)
Q Consensus 207 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l 248 (251)
++++|++.+ +|..+..+++|++|++++|.+. .+|..++.+
T Consensus 278 ~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l 317 (390)
T 3o6n_A 278 YISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF 317 (390)
T ss_dssp ECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHH
T ss_pred ECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCcccccc
Confidence 666665433 3444556666666666665443 556555443
No 27
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=1.7e-20 Score=167.30 Aligned_cols=116 Identities=27% Similarity=0.189 Sum_probs=59.4
Q ss_pred cCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCC-CC--ccc--cCCccEEEccccCCccC-CcccccCccCC
Q 025516 131 SVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKR-LP--EIS--SGNIGQLFLSGTAIEEL-PSSFELLLRLW 204 (251)
Q Consensus 131 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~--~~~--~~~L~~L~l~~n~i~~l-p~~~~~l~~L~ 204 (251)
+++|++|++++|.+.+..|..++++++|++|++++|.+.+. ++ ... +++|++|++++|.++.+ |..++.+++|+
T Consensus 424 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 503 (606)
T 3t6q_A 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMN 503 (606)
T ss_dssp CTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCC
Confidence 34455555555544444444444555555555555544331 11 111 45555555555555543 34455556666
Q ss_pred EEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhh
Q 025516 205 LLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLAS 247 (251)
Q Consensus 205 ~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~ 247 (251)
.|++++|++.+..|..+.++++| +|++++|.+.+..|..++.
T Consensus 504 ~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~ 545 (606)
T 3t6q_A 504 HVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPI 545 (606)
T ss_dssp EEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHH
T ss_pred EEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhccc
Confidence 66666665555555555666666 6666665555544444443
No 28
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=1.3e-20 Score=162.73 Aligned_cols=184 Identities=18% Similarity=0.130 Sum_probs=154.5
Q ss_pred CCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCccccc-----cCcCCccE
Q 025516 62 RKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQL-----WNSVKLVI 136 (251)
Q Consensus 62 ~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~l-----~~~~~L~~ 136 (251)
++++.|++++|.+.+..+..|..+.+|+.++|+.|.+.+.....+. ++.+|++|++++|++..+ ..+++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN---GLASLNTLELFDNWLTVIPSGAFEYLSKLRE 151 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT---TCTTCCEEECCSSCCSBCCTTTSSSCTTCCE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhcc---CcccCCEEECCCCcCCccChhhhcccCCCCE
Confidence 6899999999999988888888888888777777766653222222 689999999999999754 45789999
Q ss_pred EEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc---cCCccEEEccccCCccCCcccccCccCCEEeccCCcC
Q 025516 137 LNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS---SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKR 213 (251)
Q Consensus 137 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~---~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~ 213 (251)
|++++|.+....+..+.++++|++|++++|...+.++... +++|++|++++|.++.+| .+..+++|+.|++++|.+
T Consensus 152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCC
T ss_pred EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcC
Confidence 9999998665555678899999999999987777776532 789999999999999987 478899999999999999
Q ss_pred CccCcccccCCCCCCEEeccCCcCCCCCChhhhhcc
Q 025516 214 LKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYR 249 (251)
Q Consensus 214 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~ 249 (251)
.+..|..+..+++|++|++++|.+.+..|..++.+.
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 266 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA 266 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCC
Confidence 988899999999999999999988877777766553
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=1.9e-20 Score=166.95 Aligned_cols=189 Identities=16% Similarity=0.154 Sum_probs=105.5
Q ss_pred CCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCC-CC-CcCCceEeecCCCccccc--
Q 025516 53 LNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPS-NH-SAEKLMFLEVPNSDIEQL-- 128 (251)
Q Consensus 53 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~-~~-~l~~L~~L~l~~n~i~~l-- 128 (251)
+++..|..+++|++|++++|.+.+..+..+..+..|+.++|++|.+.+ ++. .+ .+++|++|++++|.+..+
T Consensus 66 lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~l~~ 140 (597)
T 3oja_B 66 LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-----LPPHVFQNVPLLTVLVLERNDLSSLPR 140 (597)
T ss_dssp ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC-----CCHHHHcCCCCCCEEEeeCCCCCCCCH
Confidence 335566677777777777777666555566666555555555444433 222 11 466666666666666533
Q ss_pred ---cCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCC---------------------------------
Q 025516 129 ---WNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRL--------------------------------- 172 (251)
Q Consensus 129 ---~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--------------------------------- 172 (251)
..+++|++|++++|.+.+..|..++++++|++|++++|.+.+..
T Consensus 141 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~ 220 (597)
T 3oja_B 141 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASH 220 (597)
T ss_dssp TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCS
T ss_pred HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccC
Confidence 33456666666666655555555666666666666666443210
Q ss_pred ---------------------------Ccc-ccCCccEEEccccCCccC-CcccccCccCCEEeccCCcCCccCcccccC
Q 025516 173 ---------------------------PEI-SSGNIGQLFLSGTAIEEL-PSSFELLLRLWLLDLSDCKRLKSLPSSLCK 223 (251)
Q Consensus 173 ---------------------------~~~-~~~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~ 223 (251)
+.. .+++|+.|++++|.++.+ |..++.+++|+.|++++|.+.+ +|..++.
T Consensus 221 n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~ 299 (597)
T 3oja_B 221 NSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQP 299 (597)
T ss_dssp SCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSC
T ss_pred CcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCccccc
Confidence 001 144555555555555533 4455566666666666665433 3444555
Q ss_pred CCCCCEEeccCCcCCCCCChhhhhc
Q 025516 224 LKSLELLSLRGCSNLQRLPDRLASY 248 (251)
Q Consensus 224 l~~L~~L~l~~n~~~~~~p~~l~~l 248 (251)
+++|+.|++++|.+. .+|..++.+
T Consensus 300 l~~L~~L~Ls~N~l~-~i~~~~~~l 323 (597)
T 3oja_B 300 IPTLKVLDLSHNHLL-HVERNQPQF 323 (597)
T ss_dssp CTTCCEEECCSSCCC-CCGGGHHHH
T ss_pred CCCCcEEECCCCCCC-ccCcccccC
Confidence 666666666665544 566555443
No 30
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=5.7e-22 Score=165.85 Aligned_cols=198 Identities=20% Similarity=0.247 Sum_probs=111.3
Q ss_pred ceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCC-C-CcCC
Q 025516 37 KIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSN-H-SAEK 114 (251)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~-~-~l~~ 114 (251)
.++.+.+..+.+..+ .+..|.++++|+.|++++|.+.+..+..+..+.+++.+++++|.+. .++.. + .+++
T Consensus 53 ~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~ 125 (353)
T 2z80_A 53 AVKSLDLSNNRITYI--SNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-----NLSSSWFKPLSS 125 (353)
T ss_dssp TCCEEECTTSCCCEE--CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-----SCCHHHHTTCTT
T ss_pred cCcEEECCCCcCccc--CHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-----cCCHhHhCCCcc
Confidence 455565655554433 3556777788888888877777665666666655555544444332 33332 1 3555
Q ss_pred ceEeecCCCcccccc------CcCCccEEEcCCCcCCcc-ccCccccCCCccEEecCCCCCCCCCCccc-----------
Q 025516 115 LMFLEVPNSDIEQLW------NSVKLVILNLSGSKSLKS-LPAGIFNLEFLTELDLSGCSKLKRLPEIS----------- 176 (251)
Q Consensus 115 L~~L~l~~n~i~~l~------~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~----------- 176 (251)
|++|++++|++..++ .+++|++|++++|...+. .+..++++++|++|++++|.+.+..|...
T Consensus 126 L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 205 (353)
T 2z80_A 126 LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205 (353)
T ss_dssp CSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred CCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecC
Confidence 666666655554332 244555555555532222 23344455555555555554433322211
Q ss_pred ---------------cCCccEEEccccCCccC--------------------------------CcccccCccCCEEecc
Q 025516 177 ---------------SGNIGQLFLSGTAIEEL--------------------------------PSSFELLLRLWLLDLS 209 (251)
Q Consensus 177 ---------------~~~L~~L~l~~n~i~~l--------------------------------p~~~~~l~~L~~L~l~ 209 (251)
+++|++|++++|.++.+ |..+..+++|+.|+++
T Consensus 206 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls 285 (353)
T 2z80_A 206 HMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFS 285 (353)
T ss_dssp ECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECC
T ss_pred CCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECC
Confidence 45666666666666532 2234566777777777
Q ss_pred CCcCCccCccc-ccCCCCCCEEeccCCcCCCCCC
Q 025516 210 DCKRLKSLPSS-LCKLKSLELLSLRGCSNLQRLP 242 (251)
Q Consensus 210 ~n~~~~~~p~~-~~~l~~L~~L~l~~n~~~~~~p 242 (251)
+|++. .+|.. ++.+++|++|++++|++.+..|
T Consensus 286 ~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 286 RNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 77765 45544 4777777777777777776554
No 31
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=3.5e-20 Score=159.47 Aligned_cols=198 Identities=20% Similarity=0.207 Sum_probs=160.1
Q ss_pred cCCCceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCC-CC-
Q 025516 33 KGTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPS-NH- 110 (251)
Q Consensus 33 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~-~~- 110 (251)
....+++.+.+..+.+..+ .+..|.++++|+.|++++|.+....+..+..+.+|+.++++.|.+. .++. .+
T Consensus 85 ~~l~~L~~L~Ls~n~i~~i--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-----~~~~~~~~ 157 (440)
T 3zyj_A 85 KHLRHLEILQLSRNHIRTI--EIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-----SIPSYAFN 157 (440)
T ss_dssp SSCSSCCEEECCSSCCCEE--CGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-----EECTTTTT
T ss_pred hCCCCCCEEECCCCcCCcc--ChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccc-----ccCHHHhh
Confidence 3456677777777766544 4789999999999999999999877777888877777777666655 4443 22
Q ss_pred CcCCceEeecCCC-ccc-----cccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccE
Q 025516 111 SAEKLMFLEVPNS-DIE-----QLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQ 182 (251)
Q Consensus 111 ~l~~L~~L~l~~n-~i~-----~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~ 182 (251)
.+++|++|++++| .+. .+..+++|++|++++|. ...+|. +..+++|++|++++|.+.+..+..+ +++|+.
T Consensus 158 ~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 235 (440)
T 3zyj_A 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK 235 (440)
T ss_dssp TCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred hCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc-cCCCcccCEEECCCCccCccChhhhccCccCCE
Confidence 6899999999984 443 35668899999999997 446664 7889999999999998877666554 889999
Q ss_pred EEccccCCccCC-cccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCC
Q 025516 183 LFLSGTAIEELP-SSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQ 239 (251)
Q Consensus 183 L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~ 239 (251)
|++++|+++.++ ..+.++++|+.|++++|++....+..+..+++|+.|++++|+...
T Consensus 236 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 236 LWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp EECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred EECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 999999999764 467899999999999999887777788999999999999997643
No 32
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=5.8e-20 Score=148.30 Aligned_cols=179 Identities=18% Similarity=0.148 Sum_probs=145.6
Q ss_pred hhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCcccc-----ccCc
Q 025516 57 TFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQ-----LWNS 131 (251)
Q Consensus 57 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~-----l~~~ 131 (251)
....+++|+.|++++|.+... ..+..+.+++.+ +++++.+..++....+++|++|++++|.+.. +..+
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L-----~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l 108 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYL-----ALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKL 108 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEE-----ECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred ccccccceeeeeeCCCCcccc--cccccCCCCcEE-----ECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCC
Confidence 456789999999999987643 234555555544 4455555555544478999999999999975 4557
Q ss_pred CCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCcc-cccCccCCEEec
Q 025516 132 VKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPSS-FELLLRLWLLDL 208 (251)
Q Consensus 132 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l 208 (251)
++|++|++++|.+.+..+..++++++|++|++++|.+.+..+..+ +++|++|++++|.++.+|.. ++.+++|+.|++
T Consensus 109 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEEC
Confidence 899999999999776666678899999999999998776555443 89999999999999988764 588999999999
Q ss_pred cCCcCCccCcccccCCCCCCEEeccCCcCCCCCC
Q 025516 209 SDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLP 242 (251)
Q Consensus 209 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p 242 (251)
++|++.+..|..++.+++|++|++++|++.+..|
T Consensus 189 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 189 YQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 9999888777788999999999999999988877
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=1.7e-20 Score=158.88 Aligned_cols=88 Identities=24% Similarity=0.161 Sum_probs=68.9
Q ss_pred ccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCC
Q 025516 151 GIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLE 228 (251)
Q Consensus 151 ~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 228 (251)
.++.+++|++|++++|.+.+..|..+ +++|++|++++|.++.+|..+..+++|+.|++++|++. .+|..++.+++|+
T Consensus 243 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~ 321 (390)
T 3o6n_A 243 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE 321 (390)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCS
T ss_pred HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCccccccCcCC
Confidence 35667788888888887776656544 78888888888888888777778888888888888754 5677777888888
Q ss_pred EEeccCCcCCC
Q 025516 229 LLSLRGCSNLQ 239 (251)
Q Consensus 229 ~L~l~~n~~~~ 239 (251)
+|++++|++.+
T Consensus 322 ~L~L~~N~i~~ 332 (390)
T 3o6n_A 322 NLYLDHNSIVT 332 (390)
T ss_dssp EEECCSSCCCC
T ss_pred EEECCCCccce
Confidence 88888877654
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=1.5e-20 Score=167.73 Aligned_cols=90 Identities=24% Similarity=0.158 Sum_probs=65.5
Q ss_pred CccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCC
Q 025516 150 AGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSL 227 (251)
Q Consensus 150 ~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 227 (251)
..++.+++|++|++++|.+.+..|..+ +++|+.|++++|.++.+|..+..+++|+.|++++|.+. .+|..++.+++|
T Consensus 248 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L 326 (597)
T 3oja_B 248 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL 326 (597)
T ss_dssp GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTC
T ss_pred hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCC
Confidence 345667778888888887766655543 67788888888888777777777788888888887755 566667777788
Q ss_pred CEEeccCCcCCCC
Q 025516 228 ELLSLRGCSNLQR 240 (251)
Q Consensus 228 ~~L~l~~n~~~~~ 240 (251)
++|++++|.+.+.
T Consensus 327 ~~L~L~~N~l~~~ 339 (597)
T 3oja_B 327 ENLYLDHNSIVTL 339 (597)
T ss_dssp SEEECCSSCCCCC
T ss_pred CEEECCCCCCCCc
Confidence 8888887766543
No 35
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=2.7e-20 Score=166.12 Aligned_cols=212 Identities=17% Similarity=0.140 Sum_probs=166.5
Q ss_pred CCCceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCcc-ccccCCcceecceeEEeeccCCCCCCCCCC-C
Q 025516 34 GTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRC-KVSHLQDLRFAEVKYLHWHGYPLKSLPSNH-S 111 (251)
Q Consensus 34 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~ 111 (251)
...+++.+.+..+.+... .+..+..+++|+.|++++|.+.+..+. .+..+..++.++++.|.+.+.. ..+..+ .
T Consensus 299 ~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~~ 374 (606)
T 3t6q_A 299 GLSTLKKLVLSANKFENL--CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD--CCNLQLRN 374 (606)
T ss_dssp SCTTCCEEECTTCCCSBG--GGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE--ESTTTTTT
T ss_pred ccccCCEEECccCCcCcC--chhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc--Ccchhccc
Confidence 345677777776665543 367889999999999999988754443 4777777777777666655421 113333 6
Q ss_pred cCCceEeecCCCcccc-----ccCcCCccEEEcCCCcCCccccCc-cccCCCccEEecCCCCCCCCCCccc--cCCccEE
Q 025516 112 AEKLMFLEVPNSDIEQ-----LWNSVKLVILNLSGSKSLKSLPAG-IFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQL 183 (251)
Q Consensus 112 l~~L~~L~l~~n~i~~-----l~~~~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L 183 (251)
+++|++|++++|.+.. +..+++|++|++++|.+.+..|.. ++++++|++|++++|.+.+..+... +++|++|
T Consensus 375 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 454 (606)
T 3t6q_A 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL 454 (606)
T ss_dssp CTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEE
Confidence 8899999999998853 456789999999999877665544 7889999999999998877766644 8899999
Q ss_pred EccccCCcc--CC--cccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhcc
Q 025516 184 FLSGTAIEE--LP--SSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYR 249 (251)
Q Consensus 184 ~l~~n~i~~--lp--~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~ 249 (251)
++++|.++. +| ..+..+++|+.|++++|.+.+..|..++.+++|++|++++|.+.+..|..++.++
T Consensus 455 ~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 524 (606)
T 3t6q_A 455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK 524 (606)
T ss_dssp ECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCC
T ss_pred ECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccc
Confidence 999999874 33 4688999999999999998888889999999999999999999988888887765
No 36
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.84 E-value=2.7e-20 Score=151.68 Aligned_cols=194 Identities=16% Similarity=0.160 Sum_probs=152.3
Q ss_pred CCceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCC
Q 025516 35 TEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEK 114 (251)
Q Consensus 35 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~ 114 (251)
..++..+.+..+.+..+ |..+ .++++.|++++|.+.+..+..+..+..++.++++.|.+. .++....+++
T Consensus 9 l~~l~~l~~~~~~l~~i---p~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~l~~ 78 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTAL---PPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-----KLQVDGTLPV 78 (290)
T ss_dssp STTCCEEECTTSCCSSC---CSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-----EEECCSCCTT
T ss_pred cCCccEEECCCCCCCcC---CCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-----cccCCCCCCc
Confidence 44556666655555443 2233 378999999999998777777777777666666555544 4544457899
Q ss_pred ceEeecCCCcccccc----CcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEcccc
Q 025516 115 LMFLEVPNSDIEQLW----NSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGT 188 (251)
Q Consensus 115 L~~L~l~~n~i~~l~----~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n 188 (251)
|++|++++|++..++ .+++|++|++++|.+.+..+..++++++|++|++++|.+.+..+..+ +++|+.|++++|
T Consensus 79 L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 999999999997654 56789999999998776666778899999999999998776555443 789999999999
Q ss_pred CCccCCcc-cccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCC
Q 025516 189 AIEELPSS-FELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQ 239 (251)
Q Consensus 189 ~i~~lp~~-~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~ 239 (251)
+++.+|.. +..+++|+.|++++|++. .+|..+..+++|+++++++|+...
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 99999875 478999999999999965 778888889999999999988764
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=1.1e-20 Score=164.05 Aligned_cols=204 Identities=19% Similarity=0.199 Sum_probs=145.4
Q ss_pred CceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCC-C-CcC
Q 025516 36 EKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSN-H-SAE 113 (251)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~-~-~l~ 113 (251)
..++.+.+..+.+..+ .+..|.++++|+.|++++|.+.+..+..|..+.+|+.++|+.|.+ ..+|.. + +++
T Consensus 32 ~~l~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l-----~~~~~~~~~~l~ 104 (477)
T 2id5_A 32 TETRLLDLGKNRIKTL--NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL-----KLIPLGVFTGLS 104 (477)
T ss_dssp TTCSEEECCSSCCCEE--CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-----CSCCTTSSTTCT
T ss_pred CCCcEEECCCCccceE--CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC-----CccCcccccCCC
Confidence 4566666766665544 477899999999999999999987788888887776666655554 455543 2 689
Q ss_pred CceEeecCCCcccc-----ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEcc
Q 025516 114 KLMFLEVPNSDIEQ-----LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLS 186 (251)
Q Consensus 114 ~L~~L~l~~n~i~~-----l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~ 186 (251)
+|++|++++|.+.. +..+++|++|++++|.+.+..+..++++++|++|++++|.+.+..+..+ +++|+.|+++
T Consensus 105 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 184 (477)
T 2id5_A 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEE
T ss_pred CCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCC
Confidence 99999999999864 4567899999999998777777788899999999999997655433322 6788888888
Q ss_pred ccCCccCCc-ccccCccCCEEeccCCcCCccCc------------------------ccccCCCCCCEEeccCCcCCCCC
Q 025516 187 GTAIEELPS-SFELLLRLWLLDLSDCKRLKSLP------------------------SSLCKLKSLELLSLRGCSNLQRL 241 (251)
Q Consensus 187 ~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~p------------------------~~~~~l~~L~~L~l~~n~~~~~~ 241 (251)
+|.+..++. .+..+++|+.|++++|...+.+| ..+..+++|++|++++|.+.+..
T Consensus 185 ~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 264 (477)
T 2id5_A 185 HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE 264 (477)
T ss_dssp SCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEEC
T ss_pred CCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccC
Confidence 888876554 45666666666666655444433 34556666666666666554433
Q ss_pred Chhhh
Q 025516 242 PDRLA 246 (251)
Q Consensus 242 p~~l~ 246 (251)
+..++
T Consensus 265 ~~~~~ 269 (477)
T 2id5_A 265 GSMLH 269 (477)
T ss_dssp TTSCT
T ss_pred hhhcc
Confidence 33333
No 38
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=5.8e-20 Score=152.37 Aligned_cols=206 Identities=15% Similarity=0.143 Sum_probs=146.3
Q ss_pred cCCCceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCC-C-
Q 025516 33 KGTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSN-H- 110 (251)
Q Consensus 33 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~-~- 110 (251)
....+++.+.+..+.+.. +.+..|+++++|++|++++|.+........ .+ |+.++++++.+..++.. +
T Consensus 75 ~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~---~~-----L~~L~l~~n~i~~~~~~~~~ 144 (332)
T 2ft3_A 75 KGLQHLYALVLVNNKISK--IHEKAFSPLRKLQKLYISKNHLVEIPPNLP---SS-----LVELRIHDNRIRKVPKGVFS 144 (332)
T ss_dssp TTCTTCCEEECCSSCCCE--ECGGGSTTCTTCCEEECCSSCCCSCCSSCC---TT-----CCEEECCSSCCCCCCSGGGS
T ss_pred hCCCCCcEEECCCCccCc--cCHhHhhCcCCCCEEECCCCcCCccCcccc---cc-----CCEEECCCCccCccCHhHhC
Confidence 345567777776666554 347788899999999999998774332221 22 33333333333344432 1
Q ss_pred CcCCceEeecCCCcc-------------------------ccccC--cCCccEEEcCCCcCCccccCccccCCCccEEec
Q 025516 111 SAEKLMFLEVPNSDI-------------------------EQLWN--SVKLVILNLSGSKSLKSLPAGIFNLEFLTELDL 163 (251)
Q Consensus 111 ~l~~L~~L~l~~n~i-------------------------~~l~~--~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 163 (251)
.+++|++|++++|.+ ..++. .++|++|++++|.+.+..+..++++++|++|++
T Consensus 145 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L 224 (332)
T 2ft3_A 145 GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGL 224 (332)
T ss_dssp SCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBC
T ss_pred CCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 355555555555544 33322 247888888888877666778899999999999
Q ss_pred CCCCCCCCCCccc--cCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccC------CCCCCEEeccCC
Q 025516 164 SGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCK------LKSLELLSLRGC 235 (251)
Q Consensus 164 ~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~------l~~L~~L~l~~n 235 (251)
++|.+.+..+... +++|++|++++|+++.+|..+..+++|+.|++++|++....+..+.. .++|+.|++++|
T Consensus 225 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N 304 (332)
T 2ft3_A 225 GHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN 304 (332)
T ss_dssp CSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSS
T ss_pred CCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecC
Confidence 9998877666433 89999999999999999999999999999999999987666666654 467999999999
Q ss_pred cCC--CCCChhhhhc
Q 025516 236 SNL--QRLPDRLASY 248 (251)
Q Consensus 236 ~~~--~~~p~~l~~l 248 (251)
+.. +..|..+..+
T Consensus 305 ~~~~~~~~~~~~~~l 319 (332)
T 2ft3_A 305 PVPYWEVQPATFRCV 319 (332)
T ss_dssp SSCGGGSCGGGGTTB
T ss_pred cccccccCccccccc
Confidence 876 4555555544
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.84 E-value=6.5e-20 Score=152.81 Aligned_cols=108 Identities=19% Similarity=0.134 Sum_probs=73.7
Q ss_pred cCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc-cCCccEEEccccCCccCCcccccCccCCEEecc
Q 025516 131 SVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLS 209 (251)
Q Consensus 131 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~ 209 (251)
+++|++|++++|.+.+ .+. ++.+++|++|++++|.+... +... +++|++|++++|.++.++ .+..+++|+.|+++
T Consensus 220 ~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~ 295 (347)
T 4fmz_A 220 MTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLN 295 (347)
T ss_dssp CTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECC
T ss_pred CCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECc
Confidence 3455556665555332 222 55666666666666654442 3222 677888888888877764 46778888888888
Q ss_pred CCcCCccCcccccCCCCCCEEeccCCcCCCCCC
Q 025516 210 DCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLP 242 (251)
Q Consensus 210 ~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p 242 (251)
+|++.+..|..++.+++|++|++++|++.+..|
T Consensus 296 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 296 NNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp SSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred CCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 888877777888888888888888887665544
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=3.2e-20 Score=153.79 Aligned_cols=183 Identities=16% Similarity=0.073 Sum_probs=150.4
Q ss_pred CCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCC-CcCCceEeecCCCccccccC--cCCccEE
Q 025516 61 MRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH-SAEKLMFLEVPNSDIEQLWN--SVKLVIL 137 (251)
Q Consensus 61 l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l~~L~~L~l~~n~i~~l~~--~~~L~~L 137 (251)
.++++.|++++|.+.+..+..+..+.+++.++++.|.+.+. .|..+ .+++|++|++++|++..++. .++|++|
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L 126 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI----SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQEL 126 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB----CTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEE
T ss_pred CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCee----CHHHhcCCCCCCEEECCCCcCCccChhhcccccEE
Confidence 37899999999999987777788888877777776666542 24444 68999999999999987654 3689999
Q ss_pred EcCCCcCCccccCccccCCCccEEecCCCCCCC--CCCccc--cCCccEEEccccCCccCCcccccCccCCEEeccCCcC
Q 025516 138 NLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLK--RLPEIS--SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKR 213 (251)
Q Consensus 138 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~--~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~ 213 (251)
++++|.+.+..+..++++++|++|++++|.+.. ..+... +++|++|++++|.++.+|..+. ++|+.|++++|.+
T Consensus 127 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l 204 (330)
T 1xku_A 127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKI 204 (330)
T ss_dssp ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCC
T ss_pred ECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcC
Confidence 999998776666778899999999999998753 333333 8899999999999999997664 8999999999998
Q ss_pred CccCcccccCCCCCCEEeccCCcCCCCCChhhhhcc
Q 025516 214 LKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYR 249 (251)
Q Consensus 214 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~ 249 (251)
.+..|..+..+++|++|++++|.+.+..|..++.++
T Consensus 205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 240 (330)
T 1xku_A 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240 (330)
T ss_dssp CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST
T ss_pred CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCC
Confidence 888889999999999999999988776666666543
No 41
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.84 E-value=2.7e-20 Score=166.06 Aligned_cols=202 Identities=18% Similarity=0.115 Sum_probs=116.9
Q ss_pred ceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCce
Q 025516 37 KIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLM 116 (251)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~ 116 (251)
+++.+.+..+.+......+..+..+++|+.|++++|.+.+. +..+..+.+++.++++.|.+.+... .+....+++|+
T Consensus 351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~ 427 (606)
T 3vq2_A 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTE--FSAFLSLEKLL 427 (606)
T ss_dssp TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE-CCCCTTCTTCCEEECTTSEEESTTT--TTTTTTCTTCC
T ss_pred CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccc-hhhccCCCCCCeeECCCCccCCccC--hhhhhccccCC
Confidence 33444444443333322345566666666666666655442 2444555555555555555544211 01112466677
Q ss_pred EeecCCCcccc-----ccCcCCccEEEcCCCcCCc-cccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEcccc
Q 025516 117 FLEVPNSDIEQ-----LWNSVKLVILNLSGSKSLK-SLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGT 188 (251)
Q Consensus 117 ~L~l~~n~i~~-----l~~~~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n 188 (251)
+|++++|.+.. +..+++|++|++++|.+.+ ..|..++.+++|++|++++|.+.+..|..+ +++|++|++++|
T Consensus 428 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507 (606)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC
Confidence 77777776643 4455667777777766555 256666667777777777776665555433 667777777777
Q ss_pred CCccC-CcccccCccCCEEeccCCcCCccCcccccCCC-CCCEEeccCCcCCCCCC
Q 025516 189 AIEEL-PSSFELLLRLWLLDLSDCKRLKSLPSSLCKLK-SLELLSLRGCSNLQRLP 242 (251)
Q Consensus 189 ~i~~l-p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~-~L~~L~l~~n~~~~~~p 242 (251)
+++.+ |..++.+++|+.|++++|++. .+|..+..++ +|++|++++|++....+
T Consensus 508 ~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 508 NLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred cCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 77654 556666777777777777654 5555566665 47777777776665444
No 42
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=2.9e-21 Score=161.51 Aligned_cols=177 Identities=17% Similarity=0.157 Sum_probs=104.3
Q ss_pred CCceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCC--CC-C
Q 025516 35 TEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPS--NH-S 111 (251)
Q Consensus 35 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~--~~-~ 111 (251)
..+++.+.+..+.+... .+..|.++++|++|++++|.++...+..+..+.+++.++++.|. +..+|. .+ .
T Consensus 75 l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-----l~~l~~~~~~~~ 147 (353)
T 2z80_A 75 CVNLQALVLTSNGINTI--EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-----YKTLGETSLFSH 147 (353)
T ss_dssp CTTCCEEECTTSCCCEE--CTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC-----CSSSCSSCSCTT
T ss_pred CCCCCEEECCCCccCcc--CHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCC-----CcccCchhhhcc
Confidence 44555555555544432 25566667777777777776665444444444444444433333 333433 12 3
Q ss_pred cCCceEeecCCCc-cc-----cccCcCCccEEEcCCCcCCccccCcccc------------------------CCCccEE
Q 025516 112 AEKLMFLEVPNSD-IE-----QLWNSVKLVILNLSGSKSLKSLPAGIFN------------------------LEFLTEL 161 (251)
Q Consensus 112 l~~L~~L~l~~n~-i~-----~l~~~~~L~~L~l~~n~~~~~~~~~~~~------------------------l~~L~~L 161 (251)
+++|++|++++|. +. .+..+++|++|++++|.+.+..|..++. +++|++|
T Consensus 148 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 227 (353)
T 2z80_A 148 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227 (353)
T ss_dssp CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEE
T ss_pred CCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEE
Confidence 5555555555552 32 2333445555555555444443444443 5566666
Q ss_pred ecCCCCCCCCCC-------------------------------cc--ccCCccEEEccccCCccCCccc-ccCccCCEEe
Q 025516 162 DLSGCSKLKRLP-------------------------------EI--SSGNIGQLFLSGTAIEELPSSF-ELLLRLWLLD 207 (251)
Q Consensus 162 ~l~~n~~~~~~~-------------------------------~~--~~~~L~~L~l~~n~i~~lp~~~-~~l~~L~~L~ 207 (251)
++++|.+.+..+ .. .+++|++|++++|+++.+|..+ ..+++|+.|+
T Consensus 228 ~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~ 307 (353)
T 2z80_A 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIW 307 (353)
T ss_dssp EEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEE
Confidence 666665544211 11 1579999999999999999874 8999999999
Q ss_pred ccCCcCCccCc
Q 025516 208 LSDCKRLKSLP 218 (251)
Q Consensus 208 l~~n~~~~~~p 218 (251)
+++|++....|
T Consensus 308 L~~N~~~~~~~ 318 (353)
T 2z80_A 308 LHTNPWDCSCP 318 (353)
T ss_dssp CCSSCBCCCHH
T ss_pred eeCCCccCcCC
Confidence 99999887665
No 43
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.83 E-value=9.5e-20 Score=167.67 Aligned_cols=207 Identities=18% Similarity=0.193 Sum_probs=100.5
Q ss_pred CCCceEEEEeecCCcccccCCch--hhhcCCCccEEEeecccCCCCCccccccCCcceecc-------------------
Q 025516 34 GTEKIEGICLDLSKVKEIPLNPN--TFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAE------------------- 92 (251)
Q Consensus 34 ~~~~~~~~~l~~~~~~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~------------------- 92 (251)
..++++.+.+..+.+..+ |. .|+++++|+.|++++|.+. ..+ .+..+..|+.++
T Consensus 546 ~l~~L~~L~Ls~N~L~~i---p~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~ 620 (876)
T 4ecn_A 546 TGPKIQIFYMGYNNLEEF---PASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQ 620 (876)
T ss_dssp TTTTCCEEECCSSCCCBC---CCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTT
T ss_pred ccCCccEEEeeCCcCCcc---CChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhcccc
Confidence 344566666655555422 33 5666666666666666655 222 333333332222
Q ss_pred eeEEeeccCCCCCCCCCCC-c--CCceEeecCCCcccc----cc------CcCCccEEEcCCCcCCccccCccc-cCCCc
Q 025516 93 VKYLHWHGYPLKSLPSNHS-A--EKLMFLEVPNSDIEQ----LW------NSVKLVILNLSGSKSLKSLPAGIF-NLEFL 158 (251)
Q Consensus 93 L~~~~l~~~~~~~~~~~~~-l--~~L~~L~l~~n~i~~----l~------~~~~L~~L~l~~n~~~~~~~~~~~-~l~~L 158 (251)
|+.++++++.+..+|..+. + .+|+.|++++|++.+ ++ .+.+|+.|++++|.+. .+|..+. .+++|
T Consensus 621 L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L 699 (876)
T 4ecn_A 621 VEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPI 699 (876)
T ss_dssp CCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCC
T ss_pred CCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCC
Confidence 3333333444444444331 1 225555555555432 11 1224555555555433 3443332 45556
Q ss_pred cEEecCCCCCCCCCCcccc----------CCccEEEccccCCccCCcccc--cCccCCEEeccCCcCCccCcccccCCCC
Q 025516 159 TELDLSGCSKLKRLPEISS----------GNIGQLFLSGTAIEELPSSFE--LLLRLWLLDLSDCKRLKSLPSSLCKLKS 226 (251)
Q Consensus 159 ~~L~l~~n~~~~~~~~~~~----------~~L~~L~l~~n~i~~lp~~~~--~l~~L~~L~l~~n~~~~~~p~~~~~l~~ 226 (251)
+.|++++|.+. .+|...+ ++|++|++++|+++.+|..+. .+++|+.|++++|++.+ +|..++.+++
T Consensus 700 ~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~ 777 (876)
T 4ecn_A 700 STIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQ 777 (876)
T ss_dssp SEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTT
T ss_pred CEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCC
Confidence 66666655444 3333221 155566666665555555554 55556666666555444 4555555555
Q ss_pred CCEEeccC------CcCCCCCChhhhhc
Q 025516 227 LELLSLRG------CSNLQRLPDRLASY 248 (251)
Q Consensus 227 L~~L~l~~------n~~~~~~p~~l~~l 248 (251)
|+.|++++ |.+.+.+|..++.+
T Consensus 778 L~~L~Ls~N~~ls~N~l~~~ip~~l~~L 805 (876)
T 4ecn_A 778 LKAFGIRHQRDAEGNRILRQWPTGITTC 805 (876)
T ss_dssp CCEEECCCCBCTTCCBCCCCCCTTGGGC
T ss_pred CCEEECCCCCCcccccccccChHHHhcC
Confidence 55555543 44555555555443
No 44
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.83 E-value=4.8e-20 Score=166.60 Aligned_cols=206 Identities=20% Similarity=0.168 Sum_probs=117.1
Q ss_pred CceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCC-C-CcC
Q 025516 36 EKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSN-H-SAE 113 (251)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~-~-~l~ 113 (251)
.+++.+.+..+.+.. +.+..|.++++|++|++++|.+.+..+..+..+..|+.++++.|.+ ..+|.. + +++
T Consensus 25 ~~l~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-----~~l~~~~~~~l~ 97 (680)
T 1ziw_A 25 TNITVLNLTHNQLRR--LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL-----SQLSDKTFAFCT 97 (680)
T ss_dssp TTCSEEECCSSCCCC--CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC-----CCCCTTTTTTCT
T ss_pred CCCcEEECCCCCCCC--cCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc-----CccChhhhccCC
Confidence 345555555554433 3355677777777777777777666665666655555444444433 334432 2 466
Q ss_pred CceEeecCCCccccc-----cCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCcc----ccCCccEEE
Q 025516 114 KLMFLEVPNSDIEQL-----WNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEI----SSGNIGQLF 184 (251)
Q Consensus 114 ~L~~L~l~~n~i~~l-----~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~----~~~~L~~L~ 184 (251)
+|++|++++|++..+ ..+++|++|++++|.+.+..|..++++++|++|++++|.+.+..+.. .+++|++|+
T Consensus 98 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 177 (680)
T 1ziw_A 98 NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177 (680)
T ss_dssp TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEE
T ss_pred CCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEE
Confidence 666666666665432 34556666666666655555555555666666666665544332221 123444444
Q ss_pred ccccCCccC----------------------------------------------------CcccccCcc--CCEEeccC
Q 025516 185 LSGTAIEEL----------------------------------------------------PSSFELLLR--LWLLDLSD 210 (251)
Q Consensus 185 l~~n~i~~l----------------------------------------------------p~~~~~l~~--L~~L~l~~ 210 (251)
+++|.++.+ |..+..++. |+.|++++
T Consensus 178 L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~ 257 (680)
T 1ziw_A 178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY 257 (680)
T ss_dssp CTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTT
T ss_pred CCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCC
Confidence 444443322 223334433 77777777
Q ss_pred CcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhc
Q 025516 211 CKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASY 248 (251)
Q Consensus 211 n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l 248 (251)
|.+.+..|..++.+++|++|++++|.+.+..|..++.+
T Consensus 258 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 295 (680)
T 1ziw_A 258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL 295 (680)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTC
T ss_pred CCcCccCcccccCcccccEeeCCCCccCccChhhhcCC
Confidence 77666666677777777777777777766666555443
No 45
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=7.2e-20 Score=150.38 Aligned_cols=189 Identities=14% Similarity=0.130 Sum_probs=148.3
Q ss_pred CCceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCC
Q 025516 35 TEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEK 114 (251)
Q Consensus 35 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~ 114 (251)
..+++.+.+..+.+..+ + .+..+++|+.|++++|.+.+..+ +..+.+|+.++++.|.+ ..++....+++
T Consensus 40 l~~L~~L~l~~~~i~~l---~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l-----~~~~~~~~l~~ 108 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTI---E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL-----KNVSAIAGLQS 108 (308)
T ss_dssp HHTCCEEECTTSCCCCC---T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC-----SCCGGGTTCTT
T ss_pred cCCcCEEEeeCCCccCc---h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcC-----CCchhhcCCCC
Confidence 34566666766655543 2 58899999999999999887544 66666666666655554 44554457899
Q ss_pred ceEeecCCCcccc---ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccccCCccEEEccccCCc
Q 025516 115 LMFLEVPNSDIEQ---LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIE 191 (251)
Q Consensus 115 L~~L~l~~n~i~~---l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~i~ 191 (251)
|++|++++|++.. +..+++|++|++++|.+.+ ++. ++.+++|++|++++|.+....+-..+++|+.|++++|.++
T Consensus 109 L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 109 IKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS 186 (308)
T ss_dssp CCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred CCEEECCCCCCCCchhhcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccC
Confidence 9999999999875 5567899999999998554 443 8889999999999998765444233899999999999999
Q ss_pred cCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCC
Q 025516 192 ELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQ 239 (251)
Q Consensus 192 ~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~ 239 (251)
.++. +..+++|+.|++++|++.+.. .+..+++|+.|++++|++.+
T Consensus 187 ~~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 187 DISP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred cChh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 8876 789999999999999976554 38999999999999987653
No 46
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.83 E-value=3e-20 Score=170.99 Aligned_cols=181 Identities=19% Similarity=0.162 Sum_probs=134.8
Q ss_pred chhhhcCCCccEEEeecccCCC-----------------CCccccc--cCCcceecceeEEeeccCCCCCCCCCC-CcCC
Q 025516 55 PNTFAKMRKLRFLKFYSSSFNG-----------------ENRCKVS--HLQDLRFAEVKYLHWHGYPLKSLPSNH-SAEK 114 (251)
Q Consensus 55 ~~~~~~l~~L~~L~l~~n~~~~-----------------~~~~~l~--~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l~~ 114 (251)
|..|+++++|+.|++++|.+++ ..|..+. .+.+|+.++|+.|.+.+ .+|..+ .+++
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~----~iP~~l~~L~~ 516 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT----QLPDFLYDLPE 516 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC----SCCGGGGGCSS
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc----cChHHHhCCCC
Confidence 6678899999999999998887 2566655 77777777777666554 566555 5888
Q ss_pred ceEeecCCCc-ccc------ccC-------cCCccEEEcCCCcCCccccC--ccccCCCccEEecCCCCCCCCCCccc-c
Q 025516 115 LMFLEVPNSD-IEQ------LWN-------SVKLVILNLSGSKSLKSLPA--GIFNLEFLTELDLSGCSKLKRLPEIS-S 177 (251)
Q Consensus 115 L~~L~l~~n~-i~~------l~~-------~~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~-~ 177 (251)
|++|++++|+ ++. +.. +++|++|++++|.+. .+|. .++++++|++|++++|.+. .+|... +
T Consensus 517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L 594 (876)
T 4ecn_A 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTN 594 (876)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTT
T ss_pred CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cchhhcCC
Confidence 8999998887 543 222 348888888888755 7787 7888888888888888766 666333 7
Q ss_pred CCccEEEccccCCccCCcccccCcc-CCEEeccCCcCCccCcccccCCCC--CCEEeccCCcCCCCCC
Q 025516 178 GNIGQLFLSGTAIEELPSSFELLLR-LWLLDLSDCKRLKSLPSSLCKLKS--LELLSLRGCSNLQRLP 242 (251)
Q Consensus 178 ~~L~~L~l~~n~i~~lp~~~~~l~~-L~~L~l~~n~~~~~~p~~~~~l~~--L~~L~l~~n~~~~~~p 242 (251)
++|+.|++++|.++.+|..+..+++ |+.|++++|.+. .+|..+..++. |+.|++++|.+.+.+|
T Consensus 595 ~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 595 VKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661 (876)
T ss_dssp SEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred CcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccc
Confidence 7888888888888888888888888 888888888865 66766655543 7777777776665544
No 47
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.83 E-value=4.3e-20 Score=164.79 Aligned_cols=138 Identities=24% Similarity=0.235 Sum_probs=99.5
Q ss_pred CcCCceEeecCCCcccc------ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCC-CCccc--cCCcc
Q 025516 111 SAEKLMFLEVPNSDIEQ------LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKR-LPEIS--SGNIG 181 (251)
Q Consensus 111 ~l~~L~~L~l~~n~i~~------l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~--~~~L~ 181 (251)
.+++|+.|++++|++.. +..+++|++|++++|.+.+..|..++++++|++|++++|.+.+. .|..+ +++|+
T Consensus 397 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 476 (606)
T 3vq2_A 397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT 476 (606)
T ss_dssp TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCC
Confidence 46667777777776643 33456777777777776666677777777788888887776652 44433 67888
Q ss_pred EEEccccCCccC-CcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhcc
Q 025516 182 QLFLSGTAIEEL-PSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYR 249 (251)
Q Consensus 182 ~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~ 249 (251)
+|++++|.++.+ |..++++++|+.|++++|++.+..|..++.+++|++|++++|++. .+|.++..+.
T Consensus 477 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~ 544 (606)
T 3vq2_A 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFP 544 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSC
T ss_pred EEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhc
Confidence 888888888754 456778888888888888877777888888888888888887654 6777666543
No 48
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=1.5e-20 Score=163.78 Aligned_cols=186 Identities=15% Similarity=0.056 Sum_probs=131.8
Q ss_pred chhhhcCC----CccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCccccccC
Q 025516 55 PNTFAKMR----KLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWN 130 (251)
Q Consensus 55 ~~~~~~l~----~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~l~~ 130 (251)
|..+..+. +|+.|++++|.+.+..+..+..+.+|+.++|+.|.+.+. +....+++|++|++++|.+.+++.
T Consensus 23 ~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----~~l~~l~~L~~L~Ls~N~l~~l~~ 97 (487)
T 3oja_A 23 KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-----LDLESLSTLRTLDLNNNYVQELLV 97 (487)
T ss_dssp HHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEE-----EECTTCTTCCEEECCSSEEEEEEE
T ss_pred HHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCC-----cccccCCCCCEEEecCCcCCCCCC
Confidence 44454444 899999999999998888888888888888877776642 223357788888888887766554
Q ss_pred cC---------------------CccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc---cCCccEEEcc
Q 025516 131 SV---------------------KLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS---SGNIGQLFLS 186 (251)
Q Consensus 131 ~~---------------------~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~---~~~L~~L~l~ 186 (251)
.+ +|+.|++++|.+.+..|..++++++|++|++++|.+.+..|... +++|+.|+++
T Consensus 98 ~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls 177 (487)
T 3oja_A 98 GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (487)
T ss_dssp CTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred CCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecC
Confidence 44 45555555555555556666777778888888877766555432 5778888888
Q ss_pred ccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhc
Q 025516 187 GTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASY 248 (251)
Q Consensus 187 ~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l 248 (251)
+|.++.+|. ...+++|+.|++++|.+.+ +|..++.+++|+.|++++|.+. .+|..++.+
T Consensus 178 ~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l 236 (487)
T 3oja_A 178 YNFIYDVKG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236 (487)
T ss_dssp TSCCCEEEC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred CCccccccc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccC
Confidence 888776654 3357888888888888665 4445888888888888887666 477766544
No 49
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.82 E-value=2.2e-19 Score=146.23 Aligned_cols=181 Identities=21% Similarity=0.194 Sum_probs=143.3
Q ss_pred hhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCC-CC-CcCCceEeecCCCccccc---cCcC
Q 025516 58 FAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPS-NH-SAEKLMFLEVPNSDIEQL---WNSV 132 (251)
Q Consensus 58 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~-~~-~l~~L~~L~l~~n~i~~l---~~~~ 132 (251)
+.++++++.++++++.++...+ .+ +..++ .++++++.+..++. .+ .+++|++|++++|.+..+ ..++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~-~~--~~~l~-----~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~ 77 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPP-DL--PKDTT-----ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP 77 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCS-CC--CTTCC-----EEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCT
T ss_pred ccccCCccEEECCCCCCCcCCC-CC--CCCCC-----EEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCC
Confidence 5678999999999998875432 22 23444 44455555444432 23 689999999999999754 4577
Q ss_pred CccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCcc-cccCccCCEEecc
Q 025516 133 KLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPSS-FELLLRLWLLDLS 209 (251)
Q Consensus 133 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~ 209 (251)
+|++|++++|. ...+|..+.++++|++|++++|.+.+..+..+ +++|++|++++|+++.+|.. +..+++|+.|+++
T Consensus 78 ~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 156 (290)
T 1p9a_G 78 VLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156 (290)
T ss_dssp TCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred cCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECC
Confidence 99999999997 55788888899999999999998876655544 88999999999999988864 5789999999999
Q ss_pred CCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhc
Q 025516 210 DCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASY 248 (251)
Q Consensus 210 ~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l 248 (251)
+|++.+..+..+..+++|++|++++|.+. .+|.++...
T Consensus 157 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~ 194 (290)
T 1p9a_G 157 NNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGS 194 (290)
T ss_dssp TSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT
T ss_pred CCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhccc
Confidence 99987655566789999999999997665 788876654
No 50
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.82 E-value=2.9e-19 Score=142.52 Aligned_cols=171 Identities=17% Similarity=0.169 Sum_probs=123.2
Q ss_pred CCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCC-C-CcCCceEeecCCCcccc-----ccCcCCc
Q 025516 62 RKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSN-H-SAEKLMFLEVPNSDIEQ-----LWNSVKL 134 (251)
Q Consensus 62 ~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~-~-~l~~L~~L~l~~n~i~~-----l~~~~~L 134 (251)
...+.++++++.+..... .+ ... ++.++++++.+..++.. + .+++|++|++++|.+.. +..+++|
T Consensus 14 ~~~~~l~~~~~~l~~~p~-~~--~~~-----l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 85 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPS-GI--PAD-----TEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85 (251)
T ss_dssp GGGTEEECTTCCCSSCCS-CC--CTT-----CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCCeEEecCCCCccccCC-CC--CCC-----CCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcC
Confidence 345566666666553221 11 122 33344444444444332 2 57788888888887764 4556789
Q ss_pred cEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCc-ccccCccCCEEeccCC
Q 025516 135 VILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPS-SFELLLRLWLLDLSDC 211 (251)
Q Consensus 135 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n 211 (251)
++|++++|.+.+..+..++.+++|++|++++|.+.+..+..+ +++|++|++++|+++.+|. .++.+++|+.|++++|
T Consensus 86 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 165 (251)
T 3m19_A 86 GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165 (251)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC
Confidence 999999988766666677888999999999998765555433 7889999999999998876 5788999999999999
Q ss_pred cCCccCcccccCCCCCCEEeccCCcCCCC
Q 025516 212 KRLKSLPSSLCKLKSLELLSLRGCSNLQR 240 (251)
Q Consensus 212 ~~~~~~p~~~~~l~~L~~L~l~~n~~~~~ 240 (251)
++.+..+..+..+++|++|++++|++...
T Consensus 166 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 166 QLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 98777777888999999999999888765
No 51
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.82 E-value=7.3e-19 Score=141.66 Aligned_cols=179 Identities=21% Similarity=0.166 Sum_probs=139.6
Q ss_pred CCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCC-CC-CcCCceEeecCCCccccc-----cCcCCc
Q 025516 62 RKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPS-NH-SAEKLMFLEVPNSDIEQL-----WNSVKL 134 (251)
Q Consensus 62 ~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~-~~-~l~~L~~L~l~~n~i~~l-----~~~~~L 134 (251)
.+.+.++++++.++... ..+ +.. ++.++++++.+..++. .+ .+++|++|++++|++..+ ..+++|
T Consensus 16 ~~~~~l~~~~~~l~~ip-~~~--~~~-----l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L 87 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIP-SNI--PAD-----TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL 87 (270)
T ss_dssp TTTTEEECTTSCCSSCC-SCC--CTT-----CSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTC
T ss_pred CCCCEEEccCCCCCccC-CCC--CCC-----CCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCC
Confidence 35788999998887532 222 233 4455555555556664 33 689999999999999754 457799
Q ss_pred cEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCcc-cccCccCCEEeccCC
Q 025516 135 VILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPSS-FELLLRLWLLDLSDC 211 (251)
Q Consensus 135 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n 211 (251)
++|++++|.+.+..+..++++++|++|++++|.+....+..+ +++|++|++++|.++.+|.. +..+++|+.|++++|
T Consensus 88 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN 167 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC
Confidence 999999998666556667889999999999998877666543 89999999999999988875 789999999999999
Q ss_pred cCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhc
Q 025516 212 KRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASY 248 (251)
Q Consensus 212 ~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l 248 (251)
.+....+..+..+++|++|++++|.+.+..+..++.+
T Consensus 168 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 204 (270)
T 2o6q_A 168 QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSL 204 (270)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred cCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccc
Confidence 9887777779999999999999987765333345443
No 52
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.82 E-value=5.9e-19 Score=154.73 Aligned_cols=174 Identities=15% Similarity=0.079 Sum_probs=134.3
Q ss_pred CCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCC-CcCCceEeecCCCcccc-------ccCcCC
Q 025516 62 RKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH-SAEKLMFLEVPNSDIEQ-------LWNSVK 133 (251)
Q Consensus 62 ~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l~~L~~L~l~~n~i~~-------l~~~~~ 133 (251)
.+|+.|++++|.+..... ...+..++.++++.|.+.+ .+|..+ .+++|++|++++|++.+ +..+++
T Consensus 302 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~ 375 (520)
T 2z7x_B 302 MNIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTD----TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS 375 (520)
T ss_dssp CCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCT----TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTT
T ss_pred CceeEEEcCCCccccccc--hhhCCcccEEEeECCccCh----hhhhhhccCCCCCEEEccCCccCccccchHHHhhCCC
Confidence 445555555555433210 1344555555555555444 244444 68999999999999974 457889
Q ss_pred ccEEEcCCCcCCccccCc-cccCCCccEEecCCCCCCCCCCccccCCccEEEccccCCccCCcccccCccCCEEeccCCc
Q 025516 134 LVILNLSGSKSLKSLPAG-IFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCK 212 (251)
Q Consensus 134 L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~ 212 (251)
|++|++++|.+.+.+|.. +..+++|++|++++|.+.+..+....++|+.|++++|+++.+|..+..+++|+.|++++|+
T Consensus 376 L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ 455 (520)
T ss_dssp CCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCc
Confidence 999999999977757654 7789999999999999887777655689999999999999999988899999999999999
Q ss_pred CCccCccc-ccCCCCCCEEeccCCcCCCCCC
Q 025516 213 RLKSLPSS-LCKLKSLELLSLRGCSNLQRLP 242 (251)
Q Consensus 213 ~~~~~p~~-~~~l~~L~~L~l~~n~~~~~~p 242 (251)
+. .+|.. +..+++|++|++++|++.+..+
T Consensus 456 l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 456 LK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 77 56654 8999999999999999887665
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.82 E-value=1.2e-20 Score=155.64 Aligned_cols=186 Identities=14% Similarity=0.031 Sum_probs=132.5
Q ss_pred chhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCccccccCcCC-
Q 025516 55 PNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSVK- 133 (251)
Q Consensus 55 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~l~~~~~- 133 (251)
...+..+++|+.|++++|.+.+..+..+..+.+++.++++.|.+.+ .+....+++|++|++++|++.+++..++
T Consensus 27 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-----~~~~~~l~~L~~L~Ls~n~l~~l~~~~~L 101 (317)
T 3o53_A 27 ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-----TLDLESLSTLRTLDLNNNYVQELLVGPSI 101 (317)
T ss_dssp HHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE-----EEEETTCTTCCEEECCSSEEEEEEECTTC
T ss_pred HHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc-----chhhhhcCCCCEEECcCCccccccCCCCc
Confidence 4456677899999999999998877788888887777777776654 2223357788888888887776655554
Q ss_pred --------------------ccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc---cCCccEEEccccCC
Q 025516 134 --------------------LVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS---SGNIGQLFLSGTAI 190 (251)
Q Consensus 134 --------------------L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~---~~~L~~L~l~~n~i 190 (251)
|++|++++|.+.+..+..++.+++|++|++++|.+.+..+... +++|++|++++|.+
T Consensus 102 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 102 ETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (317)
T ss_dssp CEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred CEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence 5555555555444445566677788888888887665444322 57888888888888
Q ss_pred ccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhc
Q 025516 191 EELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASY 248 (251)
Q Consensus 191 ~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l 248 (251)
+.+|.. ..+++|+.|++++|.+.+ +|..+..+++|++|++++|.+. .+|..++.+
T Consensus 182 ~~~~~~-~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l 236 (317)
T 3o53_A 182 YDVKGQ-VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236 (317)
T ss_dssp CEEECC-CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred cccccc-cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcC
Confidence 877543 347888888888888654 4555888899999999987655 577766544
No 54
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.82 E-value=2.8e-19 Score=161.61 Aligned_cols=187 Identities=19% Similarity=0.152 Sum_probs=114.2
Q ss_pred CchhhhcCCCccEEEeecccCCCCCc-cccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCccc------
Q 025516 54 NPNTFAKMRKLRFLKFYSSSFNGENR-CKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIE------ 126 (251)
Q Consensus 54 ~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~------ 126 (251)
.+.+|..+++|+.|++++|.+.+..+ ..+..+..++.++++.|.+.+.....+. .+++|+.|++++|.+.
T Consensus 397 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---~~~~L~~L~l~~n~l~~~~~~p 473 (680)
T 1ziw_A 397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA---LVPSLQRLMLRRVALKNVDSSP 473 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTT---TCTTCCEEECTTSCCBCTTCSS
T ss_pred ChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhh---cCcccccchhccccccccccCC
Confidence 35677777788888888777765333 4566666666666666655442222221 4566666666666553
Q ss_pred -cccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCC----Cc------cccCCccEEEccccCCccCCc
Q 025516 127 -QLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRL----PE------ISSGNIGQLFLSGTAIEELPS 195 (251)
Q Consensus 127 -~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~----~~------~~~~~L~~L~l~~n~i~~lp~ 195 (251)
.+..+++|++|++++|.+.+..+..++++++|++|++++|.+.+.. |. ..+++|++|++++|+++.+|.
T Consensus 474 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~ 553 (680)
T 1ziw_A 474 SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553 (680)
T ss_dssp CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH
Confidence 2344556777777777655544555666777777777777654321 11 115667777777777776665
Q ss_pred -ccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCCh
Q 025516 196 -SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPD 243 (251)
Q Consensus 196 -~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~ 243 (251)
.+.++++|+.|++++|++.+..+..+..+++|+.|++++|.+.+..|.
T Consensus 554 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~ 602 (680)
T 1ziw_A 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHH
T ss_pred HHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChh
Confidence 356677777777777776554445566777777777777655544433
No 55
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=9.3e-20 Score=149.80 Aligned_cols=189 Identities=19% Similarity=0.142 Sum_probs=106.3
Q ss_pred eEEEEeecCCcccccCCchhh--hcCCCccEEEeecccCCCCCc----cccccCCcceecceeEEeeccCCCCCCCC-CC
Q 025516 38 IEGICLDLSKVKEIPLNPNTF--AKMRKLRFLKFYSSSFNGENR----CKVSHLQDLRFAEVKYLHWHGYPLKSLPS-NH 110 (251)
Q Consensus 38 ~~~~~l~~~~~~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~----~~l~~l~~l~~l~L~~~~l~~~~~~~~~~-~~ 110 (251)
++.+.+..+.+... .+..+ ..+++|+.|++++|.+.+..+ ..+..+..++.++++.|. +..++. .+
T Consensus 93 L~~L~l~~n~l~~~--~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-----l~~~~~~~~ 165 (310)
T 4glp_A 93 LKELTLEDLKITGT--MPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-----SPAFSCEQV 165 (310)
T ss_dssp CCEEEEESCCCBSC--CCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-----SCCCCTTSC
T ss_pred eeEEEeeCCEeccc--hhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-----cchhhHHHh
Confidence 45555544443322 23333 556666666666666554222 112223333333333333 333332 22
Q ss_pred -CcCCceEeecCCCcccc---------ccCcCCccEEEcCCCcCCccccC----ccccCCCccEEecCCCCCCCCCCccc
Q 025516 111 -SAEKLMFLEVPNSDIEQ---------LWNSVKLVILNLSGSKSLKSLPA----GIFNLEFLTELDLSGCSKLKRLPEIS 176 (251)
Q Consensus 111 -~l~~L~~L~l~~n~i~~---------l~~~~~L~~L~l~~n~~~~~~~~----~~~~l~~L~~L~l~~n~~~~~~~~~~ 176 (251)
.+++|++|++++|++.. +..+++|++|++++|.+. .++. .++.+++|++|++++|.+.+..|...
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~ 244 (310)
T 4glp_A 166 RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA 244 (310)
T ss_dssp CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC
T ss_pred ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhH
Confidence 56777777777776531 135666777777777643 2222 13456777777777777666544322
Q ss_pred -----cCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCC
Q 025516 177 -----SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNL 238 (251)
Q Consensus 177 -----~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~ 238 (251)
+++|++|++++|+++.+|..+. ++|+.|++++|++.+. |. +..+++|+.|++++|++.
T Consensus 245 ~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 245 PRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp SSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred HhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 2577777777777777776553 6777777777776542 33 566677777777777654
No 56
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.81 E-value=5e-20 Score=151.57 Aligned_cols=179 Identities=17% Similarity=0.152 Sum_probs=138.3
Q ss_pred cCCCccEEEeecccCCCCCcccc--ccCCcceecceeEEeeccCCCCCCCCCC-Cc-----CCceEeecCCCcccc----
Q 025516 60 KMRKLRFLKFYSSSFNGENRCKV--SHLQDLRFAEVKYLHWHGYPLKSLPSNH-SA-----EKLMFLEVPNSDIEQ---- 127 (251)
Q Consensus 60 ~l~~L~~L~l~~n~~~~~~~~~l--~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l-----~~L~~L~l~~n~i~~---- 127 (251)
++++|++|++++|.+.+..+..+ ..+.+++.++++.|.+.+ +|..+ .+ ++|++|++++|++..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~ 167 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-----RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE 167 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSS-----SSSHHHHHHTTCCTTCCEEEEESCSCCCCCTT
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcc-----hhHHHHHHHHhhcCCCcEEEeeCCCCccchHH
Confidence 68999999999999998777765 677777777776666654 34433 23 899999999999864
Q ss_pred -ccCcCCccEEEcCCCcCCcc--ccCcc--ccCCCccEEecCCCCCCC--CCCcc---ccCCccEEEccccCCccCC--c
Q 025516 128 -LWNSVKLVILNLSGSKSLKS--LPAGI--FNLEFLTELDLSGCSKLK--RLPEI---SSGNIGQLFLSGTAIEELP--S 195 (251)
Q Consensus 128 -l~~~~~L~~L~l~~n~~~~~--~~~~~--~~l~~L~~L~l~~n~~~~--~~~~~---~~~~L~~L~l~~n~i~~lp--~ 195 (251)
+..+++|++|++++|.+.+. .|..+ +.+++|++|++++|.+.+ .++.. .+++|++|++++|.++..+ .
T Consensus 168 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 247 (312)
T 1wwl_A 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP 247 (312)
T ss_dssp TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS
T ss_pred HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh
Confidence 45678999999999987664 34344 789999999999998763 22221 2589999999999999654 3
Q ss_pred ccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhc
Q 025516 196 SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASY 248 (251)
Q Consensus 196 ~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l 248 (251)
.+..+++|+.|++++|.+. .+|..+. ++|++|++++|.+.+ +|. ++.+
T Consensus 248 ~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~-~p~-~~~l 295 (312)
T 1wwl_A 248 SCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDR-NPS-PDEL 295 (312)
T ss_dssp CCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCS-CCC-TTTS
T ss_pred hhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCC-Chh-HhhC
Confidence 5667899999999999976 7787776 899999999987665 476 5544
No 57
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.81 E-value=2.9e-19 Score=165.21 Aligned_cols=91 Identities=14% Similarity=0.132 Sum_probs=56.1
Q ss_pred chhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCC--C-CcCCceEeecCCCcccc----
Q 025516 55 PNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSN--H-SAEKLMFLEVPNSDIEQ---- 127 (251)
Q Consensus 55 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~--~-~l~~L~~L~l~~n~i~~---- 127 (251)
+..|.++++|++|++++|.+.+..+..|..+.+|+.++|+.|.+.+ .++.. + .+++|++|++++|.+..
T Consensus 66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~ 141 (844)
T 3j0a_A 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD----AVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141 (844)
T ss_dssp TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSS----CCSTTCCCSSCSSCCEEEEESCCCCCCCCC
T ss_pred HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCc----ccccCccccccCCCCEEECCCCcccccccc
Confidence 5566666666666666666666556666666666666665555544 12221 2 56777777777777643
Q ss_pred --ccCcCCccEEEcCCCcCCcccc
Q 025516 128 --LWNSVKLVILNLSGSKSLKSLP 149 (251)
Q Consensus 128 --l~~~~~L~~L~l~~n~~~~~~~ 149 (251)
+..+++|++|++++|.+.+..+
T Consensus 142 ~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 142 PSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp GGGGTCSSCCEEEEESSCCCCCCS
T ss_pred hhHhhCCCCCEEECCCCcCCeeCH
Confidence 4456777777777776554433
No 58
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.81 E-value=7.6e-19 Score=155.54 Aligned_cols=149 Identities=17% Similarity=0.125 Sum_probs=106.1
Q ss_pred eeEEeeccCCCCC-CCCCC-CcCCceEeecCCCcccc-------ccCcCCccEEEcCCCcCCccccCc-cccCCCccEEe
Q 025516 93 VKYLHWHGYPLKS-LPSNH-SAEKLMFLEVPNSDIEQ-------LWNSVKLVILNLSGSKSLKSLPAG-IFNLEFLTELD 162 (251)
Q Consensus 93 L~~~~l~~~~~~~-~~~~~-~l~~L~~L~l~~n~i~~-------l~~~~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~ 162 (251)
|++++++++.+.. +|..+ .+++|++|++++|++.. +..+++|++|++++|.+.+.+|.. +..+++|++|+
T Consensus 355 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~ 434 (562)
T 3a79_B 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN 434 (562)
T ss_dssp CCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEE
T ss_pred ceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEE
Confidence 3334444444433 33333 56777777777777764 345667888888877766545543 56677788888
Q ss_pred cCCCCCCCCCCccccCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCccc-ccCCCCCCEEeccCCcCCCCC
Q 025516 163 LSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSS-LCKLKSLELLSLRGCSNLQRL 241 (251)
Q Consensus 163 l~~n~~~~~~~~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~L~l~~n~~~~~~ 241 (251)
+++|.+.+..+....++|++|++++|+++.+|..+..+++|+.|++++|++. .+|.. +..+++|+.|++++|+..+..
T Consensus 435 l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 435 LSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp CCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred CCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence 8888776655554447889999999988888887778899999999998876 55654 888899999999998887765
Q ss_pred C
Q 025516 242 P 242 (251)
Q Consensus 242 p 242 (251)
|
T Consensus 514 ~ 514 (562)
T 3a79_B 514 P 514 (562)
T ss_dssp H
T ss_pred c
Confidence 5
No 59
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=1.8e-19 Score=142.54 Aligned_cols=125 Identities=13% Similarity=0.013 Sum_probs=54.1
Q ss_pred CcCCceEeecCC-Ccccccc-----CcCCccEEEcCCCcCCccccCccccCCCcc---EEecCCC-CCCCCCCccc--cC
Q 025516 111 SAEKLMFLEVPN-SDIEQLW-----NSVKLVILNLSGSKSLKSLPAGIFNLEFLT---ELDLSGC-SKLKRLPEIS--SG 178 (251)
Q Consensus 111 ~l~~L~~L~l~~-n~i~~l~-----~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~~~~--~~ 178 (251)
++++|++|++++ |++..++ .+++|++|++++|.+.+ +|. ++.+++|+ +|++++| .+.+..+..+ ++
T Consensus 78 ~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~ 155 (239)
T 2xwt_C 78 NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC 155 (239)
T ss_dssp SCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB
T ss_pred CCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchh
Confidence 344555555554 4443222 33445555555544222 333 44444444 5555555 2222111111 34
Q ss_pred Ccc-EEEccccCCccCCcccccCccCCEEeccCCc-CCccCcccccCC-CCCCEEeccCCcC
Q 025516 179 NIG-QLFLSGTAIEELPSSFELLLRLWLLDLSDCK-RLKSLPSSLCKL-KSLELLSLRGCSN 237 (251)
Q Consensus 179 ~L~-~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~-~~~~~p~~~~~l-~~L~~L~l~~n~~ 237 (251)
+|+ +|++++|+++.+|......++|+.|++++|+ +....+..+..+ ++|+.|++++|++
T Consensus 156 ~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l 217 (239)
T 2xwt_C 156 NETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217 (239)
T ss_dssp SSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC
T ss_pred cceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc
Confidence 454 5555555555444433222445555555553 333223344444 5555555555433
No 60
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.80 E-value=1.8e-19 Score=159.57 Aligned_cols=100 Identities=19% Similarity=0.274 Sum_probs=62.0
Q ss_pred CceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCc
Q 025516 36 EKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKL 115 (251)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L 115 (251)
..++.+.+..+.+. .+.+..|.++++|++|++++|.+++..+.+|..+..|+.+++++|.+ ..+|.. .+++|
T Consensus 52 ~~L~~L~Ls~N~i~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-----~~lp~~-~l~~L 123 (562)
T 3a79_B 52 PRTKALSLSQNSIS--ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL-----QNISCC-PMASL 123 (562)
T ss_dssp TTCCEEECCSSCCC--CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCC-----CEECSC-CCTTC
T ss_pred CCcCEEECCCCCcc--ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcC-----CccCcc-ccccC
Confidence 45566666555544 34467888888999999988888877777777776666555544443 334444 55666
Q ss_pred eEeecCCCcccc------ccCcCCccEEEcCCCc
Q 025516 116 MFLEVPNSDIEQ------LWNSVKLVILNLSGSK 143 (251)
Q Consensus 116 ~~L~l~~n~i~~------l~~~~~L~~L~l~~n~ 143 (251)
++|++++|++.. +..+++|++|++++|.
T Consensus 124 ~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp SEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred CEEECCCCCccccCchHhhcccCcccEEecCCCc
Confidence 666666665543 2234455555555554
No 61
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.80 E-value=2.7e-18 Score=148.34 Aligned_cols=191 Identities=17% Similarity=0.171 Sum_probs=109.0
Q ss_pred CCceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCC
Q 025516 35 TEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEK 114 (251)
Q Consensus 35 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~ 114 (251)
..+++.+.+..+.+... | .|+.+++|++|++++|.+++.. +..+.+++.++++.|.+.+ ++ ...+++
T Consensus 41 l~~L~~L~Ls~n~l~~~---~-~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~-----~~-~~~l~~ 107 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM---T-GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTN-----LD-VTPLTK 107 (457)
T ss_dssp HTTCCEEECCSSCCCCC---T-TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSC-----CC-CTTCTT
T ss_pred cCCCCEEEccCCCcccC---h-hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCce-----ee-cCCCCc
Confidence 34566666666655543 3 5788888888888888877642 5555555555555554443 22 224566
Q ss_pred ceEeecCCCccccc--cCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc----------------
Q 025516 115 LMFLEVPNSDIEQL--WNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS---------------- 176 (251)
Q Consensus 115 L~~L~l~~n~i~~l--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~---------------- 176 (251)
|++|++++|++.++ ..+++|++|++++|.+.+ ++ ++.+++|++|++++|...+.++-..
T Consensus 108 L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 108 LTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp CCEEECCSSCCSCCCCTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC
T ss_pred CCEEECCCCcCCeecCCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce
Confidence 66666666666543 344556666666665433 21 4444555555555554333332222
Q ss_pred -----cCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhh
Q 025516 177 -----SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLA 246 (251)
Q Consensus 177 -----~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~ 246 (251)
+++|+.|++++|.++.++ ++.+++|+.|++++|++.+ +| ++.+++|++|++++|++.+.-+..+.
T Consensus 185 l~l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~ 254 (457)
T 3bz5_A 185 LDVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLS 254 (457)
T ss_dssp CCCTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCT
T ss_pred eccccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCC
Confidence 445555555555555442 5566667777777766554 44 66677777777777666554333333
No 62
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.80 E-value=6.1e-19 Score=142.46 Aligned_cols=180 Identities=18% Similarity=0.119 Sum_probs=140.3
Q ss_pred CCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCC-CC-CcCCceEeecCCCcccc-----ccCcCCc
Q 025516 62 RKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPS-NH-SAEKLMFLEVPNSDIEQ-----LWNSVKL 134 (251)
Q Consensus 62 ~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~-~~-~l~~L~~L~l~~n~i~~-----l~~~~~L 134 (251)
++|+.|++++|.+.+..+..+..+.+++.++++.|.+.+ ++. .+ .+++|++|++++|.+.. +..+++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCE-----ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCc-----cCHHHccCCcCCCEEECCCCccCccChhhhcCCccc
Confidence 579999999999988777677777777766666665544 443 23 68999999999999864 5567899
Q ss_pred cEEEcCCCcCCccccCccccCCCccEEecCCCCCCC-CCCccc--cCCccEEEccccCCccCCc-ccccCccCC----EE
Q 025516 135 VILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLK-RLPEIS--SGNIGQLFLSGTAIEELPS-SFELLLRLW----LL 206 (251)
Q Consensus 135 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~--~~~L~~L~l~~n~i~~lp~-~~~~l~~L~----~L 206 (251)
++|++++|.+.+..+..++.+++|++|++++|.+.+ .+|... +++|++|++++|+++.++. .+..+++|+ .|
T Consensus 103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L 182 (276)
T 2z62_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182 (276)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEE
T ss_pred cEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceee
Confidence 999999998776666678899999999999998776 356544 7999999999999997764 566667776 89
Q ss_pred eccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChh-hhhc
Q 025516 207 DLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDR-LASY 248 (251)
Q Consensus 207 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~-l~~l 248 (251)
++++|.+.+..+. .....+|+.|++++|.+. .+|.+ ++.+
T Consensus 183 ~ls~n~l~~~~~~-~~~~~~L~~L~L~~n~l~-~~~~~~~~~l 223 (276)
T 2z62_A 183 DLSLNPMNFIQPG-AFKEIRLKELALDTNQLK-SVPDGIFDRL 223 (276)
T ss_dssp ECCSSCCCEECTT-SSCSCCEEEEECCSSCCS-CCCTTTTTTC
T ss_pred ecCCCcccccCcc-ccCCCcccEEECCCCcee-ecCHhHhccc
Confidence 9999997655444 445568999999998866 45543 4544
No 63
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=5.2e-19 Score=139.92 Aligned_cols=190 Identities=15% Similarity=0.170 Sum_probs=147.5
Q ss_pred CceEEEEeecCCcccccCCchhhhcCCCccEEEeeccc-CCCCCccccccCCcceecceeE-EeeccCCCCCCCCC-C-C
Q 025516 36 EKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSS-FNGENRCKVSHLQDLRFAEVKY-LHWHGYPLKSLPSN-H-S 111 (251)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~l~~l~L~~-~~l~~~~~~~~~~~-~-~ 111 (251)
..++.+.+..+.+..+. +..|.++++|+.|++++|. ++...+..+..+.+++.+++++ |.+. .++.. + +
T Consensus 31 ~~l~~L~l~~n~l~~i~--~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-----~i~~~~f~~ 103 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIP--SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-----YIDPDALKE 103 (239)
T ss_dssp TTCCEEEEESCCCSEEC--TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-----EECTTSEEC
T ss_pred CcccEEEEeCCcceEEC--HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-----EcCHHHhCC
Confidence 36777777777766543 6689999999999999997 8776666787887777777766 5554 44432 2 6
Q ss_pred cCCceEeecCCCcccccc---CcCCcc---EEEcCCC-cCCccccCccccCCCcc-EEecCCCCCCCCCCccc--cCCcc
Q 025516 112 AEKLMFLEVPNSDIEQLW---NSVKLV---ILNLSGS-KSLKSLPAGIFNLEFLT-ELDLSGCSKLKRLPEIS--SGNIG 181 (251)
Q Consensus 112 l~~L~~L~l~~n~i~~l~---~~~~L~---~L~l~~n-~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~--~~~L~ 181 (251)
+++|++|++++|++..++ .+.+|+ +|++++| .+.+..+..+.++++|+ +|++++|.+. .+|... .++|+
T Consensus 104 l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~ 182 (239)
T 2xwt_C 104 LPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLD 182 (239)
T ss_dssp CTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEE
T ss_pred CCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCC
Confidence 899999999999887655 455676 9999999 65544455688999999 9999999876 555432 46899
Q ss_pred EEEccccC-CccCCc-ccccC-ccCCEEeccCCcCCccCcccccCCCCCCEEeccCCc
Q 025516 182 QLFLSGTA-IEELPS-SFELL-LRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCS 236 (251)
Q Consensus 182 ~L~l~~n~-i~~lp~-~~~~l-~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~ 236 (251)
+|++++|. ++.+|. .+..+ ++|+.|++++|++. .+|.. .+++|+.|+++++.
T Consensus 183 ~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp EEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred EEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence 99999995 998865 57888 99999999999976 45543 78899999998863
No 64
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.80 E-value=2.8e-18 Score=150.41 Aligned_cols=183 Identities=17% Similarity=0.211 Sum_probs=129.8
Q ss_pred CCccEEEeecccCCCCCcccc-----ccCCcceecce---------------------eEEeeccCCCCCCCCCCCcCCc
Q 025516 62 RKLRFLKFYSSSFNGENRCKV-----SHLQDLRFAEV---------------------KYLHWHGYPLKSLPSNHSAEKL 115 (251)
Q Consensus 62 ~~L~~L~l~~n~~~~~~~~~l-----~~l~~l~~l~L---------------------~~~~l~~~~~~~~~~~~~l~~L 115 (251)
++|+.|++++|.+.+..+..+ ..+..++.+++ +.++++++.+..++....+++|
T Consensus 247 ~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L 326 (520)
T 2z7x_B 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPF 326 (520)
T ss_dssp SSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCC
T ss_pred CcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcc
Confidence 366677777776666555555 55555554443 3333444444333322357888
Q ss_pred eEeecCCCcccc-----ccCcCCccEEEcCCCcCCc--cccCccccCCCccEEecCCCCCCCCCCccc---cCCccEEEc
Q 025516 116 MFLEVPNSDIEQ-----LWNSVKLVILNLSGSKSLK--SLPAGIFNLEFLTELDLSGCSKLKRLPEIS---SGNIGQLFL 185 (251)
Q Consensus 116 ~~L~l~~n~i~~-----l~~~~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~---~~~L~~L~l 185 (251)
++|++++|++.+ +..+++|++|++++|.+.+ .+|..++++++|++|++++|.+.+.+|... +++|++|++
T Consensus 327 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~L 406 (520)
T 2z7x_B 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406 (520)
T ss_dssp CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEEC
T ss_pred cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEEC
Confidence 888998888764 4567789999999888665 556778888899999999988777566432 678999999
Q ss_pred cccCCc-cCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChh-hhhc
Q 025516 186 SGTAIE-ELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDR-LASY 248 (251)
Q Consensus 186 ~~n~i~-~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~-l~~l 248 (251)
++|.++ .+|..+. ++|+.|++++|++. .+|..+..+++|++|++++|.+. .+|.. ++.+
T Consensus 407 s~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l 467 (520)
T 2z7x_B 407 SSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRL 467 (520)
T ss_dssp CSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred cCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccC
Confidence 999886 4554443 68999999999876 78888889999999999998666 68875 5544
No 65
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.80 E-value=4.1e-19 Score=157.13 Aligned_cols=112 Identities=24% Similarity=0.247 Sum_probs=60.0
Q ss_pred cCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCC-CCCCccc--cCCccEEEccccCCccC-CcccccCccCCEE
Q 025516 131 SVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKL-KRLPEIS--SGNIGQLFLSGTAIEEL-PSSFELLLRLWLL 206 (251)
Q Consensus 131 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~--~~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L 206 (251)
+++|++|++++|.+.+..|..++++++|++|++++|.+. +.+|... +++|++|++++|+++.+ |..++.+++|+.|
T Consensus 420 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence 344555555555444444444555555555555555443 2333322 45566666666655543 4455555666666
Q ss_pred eccCCcCCccCcccccCCCCCCEEeccCCcCCCCCC
Q 025516 207 DLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLP 242 (251)
Q Consensus 207 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p 242 (251)
++++|++.+..|..+..+++|+.|++++|++.+..|
T Consensus 500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred eCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 666665555544555566666666666666555554
No 66
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.80 E-value=1.9e-19 Score=159.25 Aligned_cols=204 Identities=19% Similarity=0.206 Sum_probs=158.7
Q ss_pred ceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCC-CcCCc
Q 025516 37 KIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH-SAEKL 115 (251)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l~~L 115 (251)
.++.+.+..+.+..+. . ..+++|+.|++++|.+.+..+. ..+..++.++++.|.+.+.. ..+..+ .+++|
T Consensus 305 ~L~~L~l~~n~~~~l~--~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~~L 375 (570)
T 2z63_A 305 GWQHLELVNCKFGQFP--T---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKG--CCSQSDFGTTSL 375 (570)
T ss_dssp CCSEEEEESCBCSSCC--B---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEE--EEEHHHHTCSCC
T ss_pred CccEEeeccCcccccC--c---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccc--cccccccccCcc
Confidence 5666667666655332 2 4789999999999987754333 44555555555555444310 012222 68999
Q ss_pred eEeecCCCcccc----ccCcCCccEEEcCCCcCCcccc-CccccCCCccEEecCCCCCCCCCCccc--cCCccEEEcccc
Q 025516 116 MFLEVPNSDIEQ----LWNSVKLVILNLSGSKSLKSLP-AGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGT 188 (251)
Q Consensus 116 ~~L~l~~n~i~~----l~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n 188 (251)
++|++++|.+.. +..+++|++|++++|.+.+..| ..+.++++|++|++++|.+.+..+..+ +++|++|++++|
T Consensus 376 ~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 455 (570)
T 2z63_A 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455 (570)
T ss_dssp CEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred CEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCC
Confidence 999999999864 5578899999999998766655 467889999999999998877777654 899999999999
Q ss_pred CCc--cCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhcc
Q 025516 189 AIE--ELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYR 249 (251)
Q Consensus 189 ~i~--~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~ 249 (251)
.++ .+|..+..+++|+.|++++|++.+..|..++.+++|++|++++|.+.+..|..+++++
T Consensus 456 ~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 518 (570)
T 2z63_A 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLT 518 (570)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred cCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhccc
Confidence 997 5898999999999999999999888899999999999999999988876666666554
No 67
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.80 E-value=1.8e-18 Score=149.81 Aligned_cols=123 Identities=23% Similarity=0.200 Sum_probs=56.9
Q ss_pred cCCceEeecCCCcccc---ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccccCCccEEEcccc
Q 025516 112 AEKLMFLEVPNSDIEQ---LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGT 188 (251)
Q Consensus 112 l~~L~~L~l~~n~i~~---l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n 188 (251)
+++|+.|++++|.+.. +..+++|++|++++|.+.+..+ ++.+++|++|++++|.+.+..+...+++|++|++++|
T Consensus 264 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN 341 (466)
T ss_dssp CTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSS
T ss_pred CCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCC
Confidence 3444444444444332 2233344444444444322211 3444455555555554444333222455555555555
Q ss_pred CCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCC
Q 025516 189 AIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQ 239 (251)
Q Consensus 189 ~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~ 239 (251)
.++.++ .+..+++|+.|++++|++.+..| +..+++|+.|++++|.+.+
T Consensus 342 ~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 342 KVSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCCCCG-GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred ccCCch-hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 555442 34455555555555555544433 4555555555555554443
No 68
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.80 E-value=2.3e-18 Score=143.45 Aligned_cols=189 Identities=19% Similarity=0.206 Sum_probs=105.3
Q ss_pred CceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCc
Q 025516 36 EKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKL 115 (251)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L 115 (251)
.+++.+.+..+.+..+. .+..+++|++|++++|.+....+ +..+.+++.++++.|. +..++....+++|
T Consensus 44 ~~L~~L~l~~~~i~~~~----~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~-----i~~~~~~~~l~~L 112 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQ----GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNK-----ITDISALQNLTNL 112 (347)
T ss_dssp TTCSEEECCSSCCCCCT----TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-----CCCCGGGTTCTTC
T ss_pred ccccEEEEeCCccccch----hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCc-----ccCchHHcCCCcC
Confidence 44556666555544332 46778888888888887765433 5555555444444443 3334433356777
Q ss_pred eEeecCCCcccc---ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccccC--------------
Q 025516 116 MFLEVPNSDIEQ---LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSG-------------- 178 (251)
Q Consensus 116 ~~L~l~~n~i~~---l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-------------- 178 (251)
++|++++|.+.. +..+++|++|++++|......+. ++.+++|++|++++|......+-..++
T Consensus 113 ~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (347)
T 4fmz_A 113 RELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIED 191 (347)
T ss_dssp SEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCC
T ss_pred CEEECcCCcccCchhhccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccc
Confidence 777777776653 33455666666666643433332 445555555555555433322211244
Q ss_pred --------CccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCC
Q 025516 179 --------NIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQ 239 (251)
Q Consensus 179 --------~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~ 239 (251)
+|+.|++++|.++.++. +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+
T Consensus 192 ~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 257 (347)
T 4fmz_A 192 ISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD 257 (347)
T ss_dssp CGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred cccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC
Confidence 44455555554444433 5566677777777776544332 6677777777777765543
No 69
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.80 E-value=7.7e-19 Score=156.92 Aligned_cols=72 Identities=24% Similarity=0.241 Sum_probs=54.9
Q ss_pred cCCccEEEccccCCccC-CcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhc
Q 025516 177 SGNIGQLFLSGTAIEEL-PSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASY 248 (251)
Q Consensus 177 ~~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l 248 (251)
+++|++|++++|+++.+ |..+.++++|+.|+|++|++.+..|..++.+++|++|++++|++.+..|..++.+
T Consensus 493 l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 565 (635)
T 4g8a_A 493 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 565 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCC
T ss_pred ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhh
Confidence 56788888888888765 4467788888888888888777767778888888888888887777777666554
No 70
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.79 E-value=3.6e-18 Score=147.57 Aligned_cols=190 Identities=16% Similarity=0.144 Sum_probs=127.8
Q ss_pred CCCceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcC
Q 025516 34 GTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAE 113 (251)
Q Consensus 34 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~ 113 (251)
...+++.+.+..+.+..+ + ++.+++|++|++++|.+.+.. +..+..++.++++.|.+.+ ++ ...++
T Consensus 62 ~l~~L~~L~Ls~n~l~~~---~--~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N~l~~-----l~-~~~l~ 127 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITTL---D--LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTK-----LD-VSQNP 127 (457)
T ss_dssp GCTTCSEEECCSSCCSCC---C--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSSCCSC-----CC-CTTCT
T ss_pred ccCCCCEEEccCCcCCeE---c--cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCCcCCe-----ec-CCCCC
Confidence 445677777777666554 2 677888888888888877642 5555555555555554433 22 22455
Q ss_pred CceEeecCCCcccc------------------------ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCC
Q 025516 114 KLMFLEVPNSDIEQ------------------------LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKL 169 (251)
Q Consensus 114 ~L~~L~l~~n~i~~------------------------l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 169 (251)
+|++|++++|++.+ +..+++|++|++++|.+.+ +| ++.+++|++|++++|.+.
T Consensus 128 ~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 128 LLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp TCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCS
T ss_pred cCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCC
Confidence 55555555555543 3344456666666655333 33 566777777777777655
Q ss_pred CCCCccccCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCC-------CCCEEeccCCcCCCCCC
Q 025516 170 KRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLK-------SLELLSLRGCSNLQRLP 242 (251)
Q Consensus 170 ~~~~~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~-------~L~~L~l~~n~~~~~~p 242 (251)
+. +-..+++|++|++++|+++.+| ++.+++|+.|++++|++.+..+..+.++. +|+.|++++|...+.+|
T Consensus 205 ~~-~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~ 281 (457)
T 3bz5_A 205 KL-DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ 281 (457)
T ss_dssp CC-CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE
T ss_pred ee-ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc
Confidence 53 3333789999999999999988 88999999999999998776555555554 66777888888777777
Q ss_pred h
Q 025516 243 D 243 (251)
Q Consensus 243 ~ 243 (251)
.
T Consensus 282 ~ 282 (457)
T 3bz5_A 282 A 282 (457)
T ss_dssp C
T ss_pred c
Confidence 3
No 71
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.79 E-value=3.5e-19 Score=153.75 Aligned_cols=192 Identities=20% Similarity=0.184 Sum_probs=108.2
Q ss_pred CceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcce-------------e------------
Q 025516 36 EKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLR-------------F------------ 90 (251)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~-------------~------------ 90 (251)
..++.+.+..+.++.+ |..|+++++|++|++++|.+.+..|..++.+..++ .
T Consensus 11 ~~L~~L~l~~n~l~~i---P~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp 87 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEM---PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred ccchhhhcccCchhhC---ChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence 4455555555555322 55677777777777777777666666555544331 1
Q ss_pred ---cceeEEeeccCCCCCCCCCCCcCCceEeecCCCccccccCc-CCccEEEcCCCcCCccccCccccCCCccEEecCCC
Q 025516 91 ---AEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNS-VKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGC 166 (251)
Q Consensus 91 ---l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~l~~~-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 166 (251)
..++.++++++.+..+|.. +.+|++|++++|++.+++.. ++|++|++++|.+.+ +| .++++++|++|++++|
T Consensus 88 ~~~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 88 ELPPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNN 163 (454)
T ss_dssp SCCTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSS
T ss_pred CCcCCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCC
Confidence 1244444445555555532 36788888888888777666 478888888887554 67 4888888888888888
Q ss_pred CCCCCCCccccCCccEEEccccCCccCCcccccCccCCEEeccCCcCCc-------------------cCcccccCCCCC
Q 025516 167 SKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLK-------------------SLPSSLCKLKSL 227 (251)
Q Consensus 167 ~~~~~~~~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~-------------------~~p~~~~~l~~L 227 (251)
.+.+ +|.. ..+|++|++++|.++.+| .++++++|+.|++++|.+.+ .+| .++.+++|
T Consensus 164 ~l~~-lp~~-~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L 239 (454)
T 1jl5_A 164 SLKK-LPDL-PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFL 239 (454)
T ss_dssp CCSC-CCCC-CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTC
T ss_pred cCcc-cCCC-cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCccc-ccCCCCCC
Confidence 7654 4432 357777777777777666 45666666666666655432 334 25566666
Q ss_pred CEEeccCCcCC
Q 025516 228 ELLSLRGCSNL 238 (251)
Q Consensus 228 ~~L~l~~n~~~ 238 (251)
++|++++|.+.
T Consensus 240 ~~L~l~~N~l~ 250 (454)
T 1jl5_A 240 TTIYADNNLLK 250 (454)
T ss_dssp CEEECCSSCCS
T ss_pred CEEECCCCcCC
Confidence 66666665444
No 72
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.79 E-value=6.7e-19 Score=162.80 Aligned_cols=178 Identities=19% Similarity=0.184 Sum_probs=91.8
Q ss_pred chhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCC-C-CcCCceEeecCCCccccccCcC
Q 025516 55 PNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSN-H-SAEKLMFLEVPNSDIEQLWNSV 132 (251)
Q Consensus 55 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~-~-~l~~L~~L~l~~n~i~~l~~~~ 132 (251)
+..|.++++|+.|++++|.+.+..+..+..+..++.++++.|.+. .++.. + .+++|++|++++|.+..++.++
T Consensus 307 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-----~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~ 381 (844)
T 3j0a_A 307 DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-----IIQDQTFKFLEKLQTLDLRDNALTTIHFIP 381 (844)
T ss_dssp TTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCC-----CCCSSCSCSCCCCCEEEEETCCSCCCSSCC
T ss_pred hHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCC-----ccChhhhcCCCCCCEEECCCCCCCcccCCC
Confidence 445555555555555555555544444554444444444444332 23221 2 4666677777766666655555
Q ss_pred CccEEEcCCCcCCccccC----------------------ccccCCCccEEecCCCCCCCCCCcc---ccCCccEEEccc
Q 025516 133 KLVILNLSGSKSLKSLPA----------------------GIFNLEFLTELDLSGCSKLKRLPEI---SSGNIGQLFLSG 187 (251)
Q Consensus 133 ~L~~L~l~~n~~~~~~~~----------------------~~~~l~~L~~L~l~~n~~~~~~~~~---~~~~L~~L~l~~ 187 (251)
+|+.|++++|.+. .+|. .++++++|++|++++|.+.+..+.. .+++|+.|++++
T Consensus 382 ~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~ 460 (844)
T 3j0a_A 382 SIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGE 460 (844)
T ss_dssp SCSEEEEESCCCC-CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEES
T ss_pred CcchhccCCCCcc-cccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCC
Confidence 5555555555432 2221 1235667777777777665432221 145555555555
Q ss_pred cCCccC------CcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCC
Q 025516 188 TAIEEL------PSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNL 238 (251)
Q Consensus 188 n~i~~l------p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~ 238 (251)
|.++.. +..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus 461 N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 517 (844)
T 3j0a_A 461 NMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517 (844)
T ss_dssp CCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCS
T ss_pred CccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCC
Confidence 555421 123445555555555555555544455555555555555555443
No 73
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.79 E-value=6.6e-18 Score=134.60 Aligned_cols=155 Identities=21% Similarity=0.213 Sum_probs=128.9
Q ss_pred eEEeeccCCCCCCCCCCCcCCceEeecCCCcccc-----ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCC
Q 025516 94 KYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQ-----LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSK 168 (251)
Q Consensus 94 ~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~-----l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 168 (251)
+..+.+++.+..+|..+. .+++.|++++|++.. +..+++|++|++++|.+.+..+..+.++++|++|++++|.+
T Consensus 17 ~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 95 (251)
T 3m19_A 17 KEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95 (251)
T ss_dssp TEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred eEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcc
Confidence 345666777778886553 789999999999964 45678999999999998777777789999999999999998
Q ss_pred CCCCCccc--cCCccEEEccccCCccCCcc-cccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhh
Q 025516 169 LKRLPEIS--SGNIGQLFLSGTAIEELPSS-FELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRL 245 (251)
Q Consensus 169 ~~~~~~~~--~~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l 245 (251)
.+..+..+ +++|++|++++|.++.+|.. +..+++|+.|++++|.+.+..+..++.+++|++|++++|.+.+..|..+
T Consensus 96 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 175 (251)
T 3m19_A 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHH
Confidence 76655543 89999999999999988875 5889999999999999877666689999999999999998876555566
Q ss_pred hhcc
Q 025516 246 ASYR 249 (251)
Q Consensus 246 ~~l~ 249 (251)
+.+.
T Consensus 176 ~~l~ 179 (251)
T 3m19_A 176 DRLG 179 (251)
T ss_dssp TTCT
T ss_pred hCCC
Confidence 5543
No 74
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.79 E-value=5.8e-19 Score=155.64 Aligned_cols=193 Identities=19% Similarity=0.173 Sum_probs=133.5
Q ss_pred ceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCc---cccccCCcceecceeEEeeccCCCCCCCC----C
Q 025516 37 KIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENR---CKVSHLQDLRFAEVKYLHWHGYPLKSLPS----N 109 (251)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~---~~l~~l~~l~~l~L~~~~l~~~~~~~~~~----~ 109 (251)
+++.+.+..+.+. .++...+..+++|+.|++++|.+.+..+ ..+..+.+++.+++++| .++.++. .
T Consensus 311 ~L~~L~l~~n~l~--~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-----~l~~~~~~~~~~ 383 (549)
T 2z81_A 311 KVKRITVENSKVF--LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-----HLRSMQKTGEIL 383 (549)
T ss_dssp TCCEEEEESSCCC--CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-----CCCCHHHHHHHG
T ss_pred cceEEEeccCccc--cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC-----cccccccchhhh
Confidence 4455555554443 2223334568888888888887765332 22344444444444444 3333332 1
Q ss_pred CCcCCceEeecCCCcccccc----CcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccccCCccEEEc
Q 025516 110 HSAEKLMFLEVPNSDIEQLW----NSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFL 185 (251)
Q Consensus 110 ~~l~~L~~L~l~~n~i~~l~----~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l 185 (251)
..+++|++|++++|++..++ .+++|++|++++|.+ ..+|..+ .++|++|++++|.+.+.. ..+++|++|++
T Consensus 384 ~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l-~~l~~~~--~~~L~~L~Ls~N~l~~~~--~~l~~L~~L~L 458 (549)
T 2z81_A 384 LTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGI-RVVKTCI--PQTLEVLDVSNNNLDSFS--LFLPRLQELYI 458 (549)
T ss_dssp GGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCC-SCCCTTS--CTTCSEEECCSSCCSCCC--CCCTTCCEEEC
T ss_pred hcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCc-ccccchh--cCCceEEECCCCChhhhc--ccCChhcEEEC
Confidence 25678888888888876554 456788888888763 3444433 357888888888766543 24689999999
Q ss_pred cccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCC
Q 025516 186 SGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLP 242 (251)
Q Consensus 186 ~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p 242 (251)
++|+++.+|. ...+++|+.|++++|++.+..|..++.+++|+.|++++|+..+..|
T Consensus 459 s~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 459 SRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCCccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 9999999987 4678999999999999888888889999999999999999988887
No 75
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.79 E-value=1.2e-17 Score=144.69 Aligned_cols=179 Identities=18% Similarity=0.199 Sum_probs=87.0
Q ss_pred hhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCC----------------CCCCCCCCCcCCceEeecC
Q 025516 58 FAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYP----------------LKSLPSNHSAEKLMFLEVP 121 (251)
Q Consensus 58 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~----------------~~~~~~~~~l~~L~~L~l~ 121 (251)
+.++++|++|++++|.+.+..+ +..+.+|+.++++.|.+.+.. +..++....+++|++|+++
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~ 185 (466)
T 1o6v_A 108 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 185 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECC
T ss_pred hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECc
Confidence 4555555555555555544322 455556666666666554321 0011111134556666666
Q ss_pred CCcccc---ccCcCCccEEEcCCCcCCcccc--------------------CccccCCCccEEecCCCCCCCCCCccccC
Q 025516 122 NSDIEQ---LWNSVKLVILNLSGSKSLKSLP--------------------AGIFNLEFLTELDLSGCSKLKRLPEISSG 178 (251)
Q Consensus 122 ~n~i~~---l~~~~~L~~L~l~~n~~~~~~~--------------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 178 (251)
+|.+.. +..+++|++|++++|.+.+..| ..+..+++|++|++++|.+.+..+-..++
T Consensus 186 ~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~ 265 (466)
T 1o6v_A 186 SNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLT 265 (466)
T ss_dssp SSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCT
T ss_pred CCcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCC
Confidence 665543 2334455555555554333222 12333444444444444433332222245
Q ss_pred CccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCC
Q 025516 179 NIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRL 241 (251)
Q Consensus 179 ~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 241 (251)
+|++|++++|.++.++. +..+++|+.|++++|++.+..| ++.+++|+.|++++|++.+..
T Consensus 266 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~ 325 (466)
T 1o6v_A 266 KLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS 325 (466)
T ss_dssp TCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCG
T ss_pred CCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCch
Confidence 55555555555555443 4555666666666665443322 556666666666666555433
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=3.7e-18 Score=140.14 Aligned_cols=178 Identities=19% Similarity=0.187 Sum_probs=138.7
Q ss_pred hhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCcccc---ccCcCC
Q 025516 57 TFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQ---LWNSVK 133 (251)
Q Consensus 57 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~---l~~~~~ 133 (251)
.+..+++|+.|++++|.+.... .+..+.+++.+++ +++.+..++....+++|++|++++|++.. +..+++
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L-----~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~ 108 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLEL-----KDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQS 108 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEEC-----CSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTT
T ss_pred cHHHcCCcCEEEeeCCCccCch--hhhccCCCCEEEc-----cCCcCCCChhHccCCCCCEEEccCCcCCCchhhcCCCC
Confidence 3457899999999999877532 4555555555554 45555556654478999999999999875 556789
Q ss_pred ccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccccCCccEEEccccCCccCCcccccCccCCEEeccCCcC
Q 025516 134 LVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKR 213 (251)
Q Consensus 134 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~ 213 (251)
|++|++++|.+.+ ++. ++.+++|++|++++|.+.+..+-..+++|+.|++++|.++.++. +..+++|+.|++++|.+
T Consensus 109 L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 109 IKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKI 185 (308)
T ss_dssp CCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred CCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCcc
Confidence 9999999998554 444 88999999999999987665443338999999999999998887 88999999999999997
Q ss_pred CccCcccccCCCCCCEEeccCCcCCCCCChhhhhc
Q 025516 214 LKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASY 248 (251)
Q Consensus 214 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l 248 (251)
.+..+ +..+++|++|++++|.+.+ +|. ++.+
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~-~~~-l~~l 216 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISD-VSP-LANT 216 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCB-CGG-GTTC
T ss_pred CcChh--hcCCCCCCEEEccCCccCc-ccc-ccCC
Confidence 65433 8899999999999987764 442 4443
No 77
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=1.4e-18 Score=153.35 Aligned_cols=187 Identities=18% Similarity=0.236 Sum_probs=143.7
Q ss_pred ceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCce
Q 025516 37 KIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLM 116 (251)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~ 116 (251)
+++.+.+..+.+..+ |..+ +++|+.|++++|.++... ..+.+ |+.+++++|.++.+|. +. .+|+
T Consensus 60 ~L~~L~Ls~n~L~~l---p~~l--~~~L~~L~Ls~N~l~~ip----~~l~~-----L~~L~Ls~N~l~~ip~-l~-~~L~ 123 (571)
T 3cvr_A 60 QFSELQLNRLNLSSL---PDNL--PPQITVLEITQNALISLP----ELPAS-----LEYLDACDNRLSTLPE-LP-ASLK 123 (571)
T ss_dssp TCSEEECCSSCCSCC---CSCC--CTTCSEEECCSSCCSCCC----CCCTT-----CCEEECCSSCCSCCCC-CC-TTCC
T ss_pred CccEEEeCCCCCCcc---CHhH--cCCCCEEECcCCCCcccc----cccCC-----CCEEEccCCCCCCcch-hh-cCCC
Confidence 566777776665543 3333 378999999999988432 23444 4445555555556666 32 2999
Q ss_pred EeecCCCcccccc-CcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccccCCccEEEccccCCccCCc
Q 025516 117 FLEVPNSDIEQLW-NSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPS 195 (251)
Q Consensus 117 ~L~l~~n~i~~l~-~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~i~~lp~ 195 (251)
+|++++|+++.++ .+++|++|++++|.+.+ +|. .+++|++|++++|.+.+ +|. +.++|+.|++++|.++.+|.
T Consensus 124 ~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~~~L~~L~Ls~N~L~~lp~ 197 (571)
T 3cvr_A 124 HLDVDNNQLTMLPELPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LPESLEALDVSTNLLESLPA 197 (571)
T ss_dssp EEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCSSCCSSCCC
T ss_pred EEECCCCcCCCCCCcCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hhCCCCEEECcCCCCCchhh
Confidence 9999999998776 46689999999998554 666 57899999999998766 666 45899999999999999998
Q ss_pred ccccCccC-------CEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhcc
Q 025516 196 SFELLLRL-------WLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYR 249 (251)
Q Consensus 196 ~~~~l~~L-------~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~ 249 (251)
+.. +| +.|++++|.+. .+|..+..+++|++|++++|++.+.+|..++.+.
T Consensus 198 -~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 198 -VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp -CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred -HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 654 77 99999999976 6888888899999999999999999999888764
No 78
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.77 E-value=5.6e-18 Score=149.33 Aligned_cols=185 Identities=16% Similarity=0.118 Sum_probs=138.3
Q ss_pred hhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCcccc-------ccC
Q 025516 58 FAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQ-------LWN 130 (251)
Q Consensus 58 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~-------l~~ 130 (251)
+..+.+|+.|++++|.+.......+..+.+++.++++.|.+.+..+........+++|++|++++|++.. +..
T Consensus 306 ~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 385 (549)
T 2z81_A 306 YSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT 385 (549)
T ss_dssp HHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGG
T ss_pred hhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhc
Confidence 4456788888888888764332223456666666666666554110000111257899999999999864 556
Q ss_pred cCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccccCCccEEEccccCCccCCcccccCccCCEEeccC
Q 025516 131 SVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSD 210 (251)
Q Consensus 131 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~ 210 (251)
+++|++|++++|.+ ..+|..++.+++|++|++++|.+. .++....++|++|++++|+++.++ ..+++|+.|++++
T Consensus 386 l~~L~~L~Ls~N~l-~~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~ 460 (549)
T 2z81_A 386 LKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFS---LFLPRLQELYISR 460 (549)
T ss_dssp CTTCCEEECTTCCC-CCCCSCCCCCTTCCEEECTTSCCS-CCCTTSCTTCSEEECCSSCCSCCC---CCCTTCCEEECCS
T ss_pred CCCCCEEECCCCCC-ccCChhhcccccccEEECCCCCcc-cccchhcCCceEEECCCCChhhhc---ccCChhcEEECCC
Confidence 78999999999974 478888888999999999999854 455555679999999999998765 5789999999999
Q ss_pred CcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhcc
Q 025516 211 CKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYR 249 (251)
Q Consensus 211 n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~ 249 (251)
|++. .+|. .+.+++|++|++++|++.+..|..++.+.
T Consensus 461 N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 497 (549)
T 2z81_A 461 NKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLT 497 (549)
T ss_dssp SCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCT
T ss_pred CccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCc
Confidence 9976 6776 56899999999999998887777777654
No 79
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=1.9e-17 Score=147.58 Aligned_cols=88 Identities=28% Similarity=0.333 Sum_probs=66.9
Q ss_pred CCccEEecCCCCCCCCCCccccCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCC
Q 025516 156 EFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGC 235 (251)
Q Consensus 156 ~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n 235 (251)
++|++|++++|.+.+ +| ..+++|+.|++++|.++.+|. .+++|+.|++++|++. .+|..++++++|+.|++++|
T Consensus 221 ~~L~~L~Ls~N~L~~-lp-~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP-VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp TTCCEEECCSSCCSC-CC-CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSC
T ss_pred CCCCEEEccCCccCc-CC-CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCC
Confidence 567777777775543 44 335778888888888888776 5678888889888866 67888888999999999998
Q ss_pred cCCCCCChhhhhcc
Q 025516 236 SNLQRLPDRLASYR 249 (251)
Q Consensus 236 ~~~~~~p~~l~~l~ 249 (251)
++.+..|..+..+.
T Consensus 295 ~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 295 PLSERTLQALREIT 308 (622)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCCCcCHHHHHhcc
Confidence 88887777666543
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.76 E-value=1.2e-18 Score=143.16 Aligned_cols=175 Identities=17% Similarity=0.088 Sum_probs=136.7
Q ss_pred cCCCccEEEeecccCCCCCcccc--ccCCcceecceeEEeeccCCCCCCC-C-CCCcCCceEeecCCCcccc-----ccC
Q 025516 60 KMRKLRFLKFYSSSFNGENRCKV--SHLQDLRFAEVKYLHWHGYPLKSLP-S-NHSAEKLMFLEVPNSDIEQ-----LWN 130 (251)
Q Consensus 60 ~l~~L~~L~l~~n~~~~~~~~~l--~~l~~l~~l~L~~~~l~~~~~~~~~-~-~~~l~~L~~L~l~~n~i~~-----l~~ 130 (251)
.+++|+.|++++|.+.+..+..+ ..+.+++.++++.|.+.+... .++ . ...+++|++|++++|++.. +..
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 167 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRS-WLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA 167 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTS-SHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhh-hhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc
Confidence 45779999999999998888777 778888888888887765211 011 0 1257899999999999964 446
Q ss_pred cCCccEEEcCCCcCCcc--cc--CccccCCCccEEecCCCCCCCCCCc----c--ccCCccEEEccccCCccC-Cccccc
Q 025516 131 SVKLVILNLSGSKSLKS--LP--AGIFNLEFLTELDLSGCSKLKRLPE----I--SSGNIGQLFLSGTAIEEL-PSSFEL 199 (251)
Q Consensus 131 ~~~L~~L~l~~n~~~~~--~~--~~~~~l~~L~~L~l~~n~~~~~~~~----~--~~~~L~~L~l~~n~i~~l-p~~~~~ 199 (251)
+++|++|++++|.+.+. .+ ..++.+++|++|++++|.+. .++. . .+++|++|++++|.++.+ |..+..
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 246 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPR 246 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSS
T ss_pred CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHh
Confidence 78999999999986653 22 33467899999999999874 3332 1 268999999999999976 777766
Q ss_pred C---ccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCC
Q 025516 200 L---LRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQ 239 (251)
Q Consensus 200 l---~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~ 239 (251)
+ ++|+.|++++|++. .+|..+. ++|++|++++|.+.+
T Consensus 247 ~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 247 CMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR 286 (310)
T ss_dssp CCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS
T ss_pred ccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC
Confidence 5 79999999999977 6787664 899999999988776
No 81
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.76 E-value=1.1e-17 Score=144.47 Aligned_cols=87 Identities=22% Similarity=0.323 Sum_probs=38.9
Q ss_pred CccEEecCCCCCCCCCCccccCCccEEEccccCCccCCcccccCccCCEEeccCCcCCc--cCcccccCC----------
Q 025516 157 FLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLK--SLPSSLCKL---------- 224 (251)
Q Consensus 157 ~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~--~~p~~~~~l---------- 224 (251)
+|++|++++|.+.+ +|.. +++|++|++++|+++.+|. .+++|+.|++++|++.+ .+|..++.+
T Consensus 318 ~L~~L~Ls~N~l~~-lp~~-~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~ 392 (454)
T 1jl5_A 318 SLEELNVSNNKLIE-LPAL-PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVP 392 (454)
T ss_dssp TCCEEECCSSCCSC-CCCC-CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------
T ss_pred cCCEEECCCCcccc-cccc-CCcCCEEECCCCccccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccc
Confidence 45555555554433 3322 4566777777777666665 35677777777777766 566666666
Q ss_pred ---CCCCEEeccCCcCCC--CCChhhhhc
Q 025516 225 ---KSLELLSLRGCSNLQ--RLPDRLASY 248 (251)
Q Consensus 225 ---~~L~~L~l~~n~~~~--~~p~~l~~l 248 (251)
++|++|++++|++.+ .+|.+++.+
T Consensus 393 ~~~~~L~~L~ls~N~l~~~~~iP~sl~~L 421 (454)
T 1jl5_A 393 ELPQNLKQLHVETNPLREFPDIPESVEDL 421 (454)
T ss_dssp -----------------------------
T ss_pred cccCcCCEEECCCCcCCccccchhhHhhe
Confidence 677777777777766 677666554
No 82
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=2.7e-17 Score=129.33 Aligned_cols=143 Identities=20% Similarity=0.121 Sum_probs=114.2
Q ss_pred ccCCCCCCCCCCCcCCceEeecCCCcccc-----ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCC
Q 025516 99 HGYPLKSLPSNHSAEKLMFLEVPNSDIEQ-----LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLP 173 (251)
Q Consensus 99 ~~~~~~~~~~~~~l~~L~~L~l~~n~i~~-----l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 173 (251)
+++.+..+|... ..+|++|++++|.+.. +..+++|++|++++|.+....+..++++++|++|++++|.+.+..+
T Consensus 27 ~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~ 105 (229)
T 3e6j_A 27 RSKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS 105 (229)
T ss_dssp TTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cCCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccCh
Confidence 444455666533 3778888888888764 4467789999999998644444556789999999999998776555
Q ss_pred ccc--cCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCC
Q 025516 174 EIS--SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLP 242 (251)
Q Consensus 174 ~~~--~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p 242 (251)
..+ +++|++|++++|+++.+|..+..+++|+.|++++|++.+..+..+..+++|+.|++++|++....+
T Consensus 106 ~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 106 AVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred hHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 443 789999999999999999999999999999999999876666778999999999999998876654
No 83
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.76 E-value=5.9e-18 Score=131.06 Aligned_cols=131 Identities=18% Similarity=0.125 Sum_probs=81.4
Q ss_pred cCCceEeecCCCcccc-----ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEE
Q 025516 112 AEKLMFLEVPNSDIEQ-----LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLF 184 (251)
Q Consensus 112 l~~L~~L~l~~n~i~~-----l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~ 184 (251)
+++|++|++++|++.. +..+++|++|++++|.+.+..+..++++++|++|++++|.+.+..+..+ +++|++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 130 (208)
T 2o6s_A 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLR 130 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEE
Confidence 4445555555554432 2345567777777666444444445667777777777776554444322 56777777
Q ss_pred ccccCCccCCcc-cccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhcc
Q 025516 185 LSGTAIEELPSS-FELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYR 249 (251)
Q Consensus 185 l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~ 249 (251)
+++|.++.+|.. +..+++|+.|++++|++. +.+++|++|+++.|.+.+.+|++++.+.
T Consensus 131 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 131 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred CCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 777777766653 566777777777777543 3445677777777777777777766654
No 84
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=1.6e-17 Score=129.83 Aligned_cols=142 Identities=19% Similarity=0.128 Sum_probs=101.5
Q ss_pred cCCCCCCCCCCCcCCceEeecCCCccccc------cCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCC
Q 025516 100 GYPLKSLPSNHSAEKLMFLEVPNSDIEQL------WNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLP 173 (251)
Q Consensus 100 ~~~~~~~~~~~~l~~L~~L~l~~n~i~~l------~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 173 (251)
++.++.+|..+ ...+++|++++|+++.+ ..+++|++|++++|.+.+..+..++++++|++|++++|.+.+..+
T Consensus 20 ~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~ 98 (220)
T 2v70_A 20 NQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQH 98 (220)
T ss_dssp SSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCG
T ss_pred CCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCH
Confidence 33334444322 23446667777766543 456678888888887665555677788888888888887766555
Q ss_pred ccc--cCCccEEEccccCCccC-CcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCC
Q 025516 174 EIS--SGNIGQLFLSGTAIEEL-PSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLP 242 (251)
Q Consensus 174 ~~~--~~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p 242 (251)
..+ +++|++|++++|.++.+ |..+..+++|+.|++++|.+.+..|..+..+++|++|++++|++....+
T Consensus 99 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 99 KMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp GGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred hHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 433 77888888888888866 4567788888888888888877778888888888888888887765544
No 85
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=4.2e-17 Score=127.47 Aligned_cols=142 Identities=21% Similarity=0.228 Sum_probs=111.0
Q ss_pred eeccCCCCCCCCCCCcCCceEeecCCCcccc-----ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCC
Q 025516 97 HWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQ-----LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKR 171 (251)
Q Consensus 97 ~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~-----l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 171 (251)
+.+++.+..+|..+. .+++.|++++|++.. +..+++|++|++++|.+.+..|..+.++++|++|++++|.+...
T Consensus 17 ~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l 95 (220)
T 2v9t_B 17 DCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95 (220)
T ss_dssp ECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC
T ss_pred EcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc
Confidence 334445556665432 678888888888764 44567899999999887777788888999999999999987654
Q ss_pred CCccc--cCCccEEEccccCCccCC-cccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCC
Q 025516 172 LPEIS--SGNIGQLFLSGTAIEELP-SSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQ 239 (251)
Q Consensus 172 ~~~~~--~~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~ 239 (251)
.+..+ +++|++|++++|.++.++ ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++..
T Consensus 96 ~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 96 PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 44433 789999999999998764 567889999999999999877777778899999999999987654
No 86
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=1.5e-17 Score=135.49 Aligned_cols=168 Identities=20% Similarity=0.200 Sum_probs=101.4
Q ss_pred hhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCcccc---ccCcCCc
Q 025516 58 FAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQ---LWNSVKL 134 (251)
Q Consensus 58 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~---l~~~~~L 134 (251)
+..+++|+.|++++|.+... ..+..+.+++.+++ +++.+..++....+++|++|++++|++.. +..+++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L-----~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L 114 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFL-----NGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKL 114 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEEC-----CSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTC
T ss_pred hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEc-----cCCccCCCcccccCCCCCEEECCCCcCCCChhhccCCCC
Confidence 34566677777776665543 12333444333333 33333344443356777777777776653 4455667
Q ss_pred cEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc-cCCccEEEccccCCccCCcccccCccCCEEeccCCcC
Q 025516 135 VILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKR 213 (251)
Q Consensus 135 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~ 213 (251)
++|++++|.+.+ + ..++.+++|++|++++|.+.+. +... +++|+.|++++|.++.++. +..+++|+.|++++|.+
T Consensus 115 ~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 115 KSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp CEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred CEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcC
Confidence 777777776443 3 3466677777777777765544 3222 6777777777777776655 66777777777777765
Q ss_pred CccCcccccCCCCCCEEeccCCcCC
Q 025516 214 LKSLPSSLCKLKSLELLSLRGCSNL 238 (251)
Q Consensus 214 ~~~~p~~~~~l~~L~~L~l~~n~~~ 238 (251)
.. +| .+..+++|+.|++++|++.
T Consensus 191 ~~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 191 SD-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred CC-Ch-hhccCCCCCEEECcCCccc
Confidence 43 33 3677777777777776544
No 87
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=9.1e-18 Score=128.97 Aligned_cols=148 Identities=15% Similarity=0.104 Sum_probs=93.4
Q ss_pred hcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCccc---cccCcCCcc
Q 025516 59 AKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIE---QLWNSVKLV 135 (251)
Q Consensus 59 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~---~l~~~~~L~ 135 (251)
..+++|+.|++++|.+.... .+..+.+ |++|++++|.+. .+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~--~l~~l~~---------------------------L~~L~l~~n~~~~~~~l~~l~~L~ 91 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT--GIEYAHN---------------------------IKDLTINNIHATNYNPISGLSNLE 91 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT--TGGGCTT---------------------------CSEEEEESCCCSCCGGGTTCTTCC
T ss_pred hhcCCccEEeccCCCccChH--HHhcCCC---------------------------CCEEEccCCCCCcchhhhcCCCCC
Confidence 56777888888877765321 2333333 333333333332 345556677
Q ss_pred EEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccC-CccCCcccccCccCCEEeccCCc
Q 025516 136 ILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTA-IEELPSSFELLLRLWLLDLSDCK 212 (251)
Q Consensus 136 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~-i~~lp~~~~~l~~L~~L~l~~n~ 212 (251)
+|++++|.+.+..+..++++++|++|++++|.+....+... +++|++|++++|. ++.+| .+..+++|+.|++++|.
T Consensus 92 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 92 RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG 170 (197)
T ss_dssp EEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC
T ss_pred EEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC
Confidence 77777776555566667777777777777776655444322 6677777777776 66666 56777888888888887
Q ss_pred CCccCcccccCCCCCCEEeccCCcCC
Q 025516 213 RLKSLPSSLCKLKSLELLSLRGCSNL 238 (251)
Q Consensus 213 ~~~~~p~~~~~l~~L~~L~l~~n~~~ 238 (251)
+.. ++ .+..+++|++|++++|++.
T Consensus 171 i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 171 VHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCC-CT-TGGGCSSCCEEEECBC---
T ss_pred CcC-hH-HhccCCCCCEEEeeCcccC
Confidence 654 33 5777888888888876543
No 88
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=1.4e-17 Score=128.00 Aligned_cols=146 Identities=16% Similarity=0.132 Sum_probs=105.5
Q ss_pred CceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCc
Q 025516 36 EKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKL 115 (251)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L 115 (251)
.+++.+.+..+.+..+ + .+..+++|+.|++++|.+.. ...+..+. +|
T Consensus 44 ~~L~~L~l~~n~i~~l---~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~---------------------------~L 90 (197)
T 4ezg_A 44 NSLTYITLANINVTDL---T-GIEYAHNIKDLTINNIHATN--YNPISGLS---------------------------NL 90 (197)
T ss_dssp HTCCEEEEESSCCSCC---T-TGGGCTTCSEEEEESCCCSC--CGGGTTCT---------------------------TC
T ss_pred CCccEEeccCCCccCh---H-HHhcCCCCCEEEccCCCCCc--chhhhcCC---------------------------CC
Confidence 4567777777766533 2 68899999999999996543 12333333 44
Q ss_pred eEeecCCCccc-----cccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc-cCCccEEEccccC
Q 025516 116 MFLEVPNSDIE-----QLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-SGNIGQLFLSGTA 189 (251)
Q Consensus 116 ~~L~l~~n~i~-----~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~~n~ 189 (251)
++|++++|++. .+..+++|++|++++|.+.+..|..++.+++|++|++++|...+.++... +++|++|++++|.
T Consensus 91 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 91 ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG 170 (197)
T ss_dssp CEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC
T ss_pred CEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC
Confidence 44444444432 35567788888998888777677778889999999999998566666544 8899999999999
Q ss_pred CccCCcccccCccCCEEeccCCcCCc
Q 025516 190 IEELPSSFELLLRLWLLDLSDCKRLK 215 (251)
Q Consensus 190 i~~lp~~~~~l~~L~~L~l~~n~~~~ 215 (251)
++.++ .+..+++|+.|++++|++.+
T Consensus 171 i~~~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 171 VHDYR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCCCT-TGGGCSSCCEEEECBC----
T ss_pred CcChH-HhccCCCCCEEEeeCcccCC
Confidence 99887 68899999999999998653
No 89
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=8.5e-17 Score=141.95 Aligned_cols=164 Identities=18% Similarity=0.202 Sum_probs=130.3
Q ss_pred CCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCccccccCcC-CccEEEcC
Q 025516 62 RKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSV-KLVILNLS 140 (251)
Q Consensus 62 ~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~l~~~~-~L~~L~l~ 140 (251)
.+++.|++++|.+.+ .+..+ +. .|+.+++++|.++.+| ..+++|++|++++|+++.++.+. +|++|+++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~-----~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~l~~~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PP-----QITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPELPASLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CT-----TCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCCCCTTCCEEECC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cC-----CCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcchhhcCCCEEECC
Confidence 399999999999887 33333 23 3555566666666777 34799999999999998877644 89999999
Q ss_pred CCcCCccccCccccCCCccEEecCCCCCCCCCCccccCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCccc
Q 025516 141 GSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSS 220 (251)
Q Consensus 141 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~ 220 (251)
+|.+.+ +|. .+++|++|++++|.+.+ +|. .+++|+.|++++|.++.+|. +. ++|+.|++++|.+. .+|.
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~-~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~-~lp~- 197 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE-LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE-SLPA- 197 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS-SCCC-
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC-cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC-chhh-
Confidence 998655 776 68899999999998765 666 67899999999999999998 65 89999999999976 6676
Q ss_pred ccCCCCC-------CEEeccCCcCCCCCChhhhhcc
Q 025516 221 LCKLKSL-------ELLSLRGCSNLQRLPDRLASYR 249 (251)
Q Consensus 221 ~~~l~~L-------~~L~l~~n~~~~~~p~~l~~l~ 249 (251)
+.. +| +.|++++|.+. .+|.++..++
T Consensus 198 ~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~ 230 (571)
T 3cvr_A 198 VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLD 230 (571)
T ss_dssp CC----------CCEEEECCSSCCC-CCCGGGGGSC
T ss_pred HHH--hhhcccccceEEecCCCcce-ecCHHHhcCC
Confidence 554 77 99999997665 6999887654
No 90
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.73 E-value=2.4e-16 Score=121.89 Aligned_cols=142 Identities=20% Similarity=0.178 Sum_probs=114.5
Q ss_pred cCCCCCCCCCCCcCCceEeecCCCcccc-----ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCc
Q 025516 100 GYPLKSLPSNHSAEKLMFLEVPNSDIEQ-----LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPE 174 (251)
Q Consensus 100 ~~~~~~~~~~~~l~~L~~L~l~~n~i~~-----l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 174 (251)
++.+..+|... ..+|++|++++|+++. +..+++|++|++++|.+.+..+..++++++|++|++++|.+.+..+.
T Consensus 16 ~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 94 (208)
T 2o6s_A 16 SQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNG 94 (208)
T ss_dssp SSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHh
Confidence 33344555332 4578888888888764 44678999999999986655555678899999999999987765554
Q ss_pred cc--cCCccEEEccccCCccCCcc-cccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCC
Q 025516 175 IS--SGNIGQLFLSGTAIEELPSS-FELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLP 242 (251)
Q Consensus 175 ~~--~~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p 242 (251)
.+ +++|++|++++|+++.+|.. +..+++|+.|++++|.+.+..+..+..+++|++|++++|+..+..|
T Consensus 95 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence 33 88999999999999988764 6899999999999999887666678999999999999999888776
No 91
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.72 E-value=4.9e-16 Score=138.58 Aligned_cols=64 Identities=30% Similarity=0.319 Sum_probs=48.5
Q ss_pred CCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhcc
Q 025516 178 GNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYR 249 (251)
Q Consensus 178 ~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~ 249 (251)
++|+.|++++|.++.+| ..+++|+.|++++|.+. .+|. .+++|++|++++|.+. .+|..++.++
T Consensus 221 ~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~ 284 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLS 284 (622)
T ss_dssp TTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSC
T ss_pred CCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhcc
Confidence 56777777777777777 34577888888888765 4555 6788999999998666 7898887764
No 92
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.72 E-value=1.5e-16 Score=142.10 Aligned_cols=183 Identities=19% Similarity=0.197 Sum_probs=132.4
Q ss_pred chhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCcccc-----cc
Q 025516 55 PNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQ-----LW 129 (251)
Q Consensus 55 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~-----l~ 129 (251)
+..+..+.+|+.++++.+..... +..+..+..++.+++..++..... .......+.+++.++++.|.+.. +.
T Consensus 390 ~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~--~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~ 466 (635)
T 4g8a_A 390 SQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMS--EFSVFLSLRNLIYLDISHTHTRVAFNGIFN 466 (635)
T ss_dssp CHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTT--SSCTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred ccchhhhhhhhhhhccccccccc-cccccccccccchhhhhccccccc--cccccccccccccccccccccccccccccc
Confidence 33444445555555544433221 122333444444444433333211 11112267889999999998864 34
Q ss_pred CcCCccEEEcCCCcCCc-cccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCc-ccccCccCCE
Q 025516 130 NSVKLVILNLSGSKSLK-SLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPS-SFELLLRLWL 205 (251)
Q Consensus 130 ~~~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~-~~~~l~~L~~ 205 (251)
.++.+++|++++|.... ..|..++.+++|++|++++|++.+..|..+ +++|++|++++|+++.++. .+.++++|+.
T Consensus 467 ~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 546 (635)
T 4g8a_A 467 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 546 (635)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCE
T ss_pred cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCE
Confidence 56789999999997554 467888899999999999999887777654 8999999999999998865 5789999999
Q ss_pred EeccCCcCCccCcccccCC-CCCCEEeccCCcCCCC
Q 025516 206 LDLSDCKRLKSLPSSLCKL-KSLELLSLRGCSNLQR 240 (251)
Q Consensus 206 L~l~~n~~~~~~p~~~~~l-~~L~~L~l~~n~~~~~ 240 (251)
|++++|++.+..|..+..+ ++|++|++++|+....
T Consensus 547 L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 547 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp EECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred EECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 9999999999999999988 6899999999988754
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.72 E-value=1.1e-19 Score=153.73 Aligned_cols=210 Identities=15% Similarity=0.054 Sum_probs=139.2
Q ss_pred cCCCceEEEEeecCCccccc-CCch-------hhhcCCCccEEEeecccCCCC----CccccccCCcceecceeEEeecc
Q 025516 33 KGTEKIEGICLDLSKVKEIP-LNPN-------TFAKMRKLRFLKFYSSSFNGE----NRCKVSHLQDLRFAEVKYLHWHG 100 (251)
Q Consensus 33 ~~~~~~~~~~l~~~~~~~~~-~~~~-------~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~l~~l~L~~~~l~~ 100 (251)
....+++.+.+..+....+. ..|. .+..+++|++|++++|.+... .+..+..+..|+.++|+.|.+..
T Consensus 57 ~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 136 (386)
T 2ca6_A 57 ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGP 136 (386)
T ss_dssp TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHH
T ss_pred HhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCH
Confidence 34566777666554332111 1122 346788888888888887763 33345556666666666665543
Q ss_pred CCCCCCCCCC-Cc---------CCceEeecCCCccc---------cccCcCCccEEEcCCCcCCc-----cccCccccCC
Q 025516 101 YPLKSLPSNH-SA---------EKLMFLEVPNSDIE---------QLWNSVKLVILNLSGSKSLK-----SLPAGIFNLE 156 (251)
Q Consensus 101 ~~~~~~~~~~-~l---------~~L~~L~l~~n~i~---------~l~~~~~L~~L~l~~n~~~~-----~~~~~~~~l~ 156 (251)
.....++..+ .+ ++|++|++++|++. .+..+++|++|++++|.+.. ..|..+..++
T Consensus 137 ~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~ 216 (386)
T 2ca6_A 137 QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ 216 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCT
T ss_pred HHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCC
Confidence 2222222211 22 78888888888875 23356788889988887552 2444677888
Q ss_pred CccEEecCCCCCC----CCCCccc--cCCccEEEccccCCcc-----CCccc--ccCccCCEEeccCCcCCc----cCcc
Q 025516 157 FLTELDLSGCSKL----KRLPEIS--SGNIGQLFLSGTAIEE-----LPSSF--ELLLRLWLLDLSDCKRLK----SLPS 219 (251)
Q Consensus 157 ~L~~L~l~~n~~~----~~~~~~~--~~~L~~L~l~~n~i~~-----lp~~~--~~l~~L~~L~l~~n~~~~----~~p~ 219 (251)
+|++|++++|.+. ..+|... +++|++|++++|.++. +|..+ +.+++|+.|++++|.+.. .+|.
T Consensus 217 ~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~ 296 (386)
T 2ca6_A 217 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT 296 (386)
T ss_dssp TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH
T ss_pred CccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH
Confidence 8999999988764 3344332 6789999999998873 45555 348889999999988776 4777
Q ss_pred cc-cCCCCCCEEeccCCcCCCCCC
Q 025516 220 SL-CKLKSLELLSLRGCSNLQRLP 242 (251)
Q Consensus 220 ~~-~~l~~L~~L~l~~n~~~~~~p 242 (251)
.+ .++++|++|++++|.+.+..|
T Consensus 297 ~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 297 VIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHhcCCCceEEEccCCcCCcchh
Confidence 66 668999999999988876664
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=4.7e-17 Score=144.80 Aligned_cols=150 Identities=20% Similarity=0.205 Sum_probs=92.7
Q ss_pred hhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCcccc---ccCcCC
Q 025516 57 TFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQ---LWNSVK 133 (251)
Q Consensus 57 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~---l~~~~~ 133 (251)
.|..+++|+.|++++|.+.+..+ +..+..|+.++|+.|. +..++....+++|+.|++++|.+.. +..+++
T Consensus 60 ~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-----l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~ 132 (605)
T 1m9s_A 60 GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK-----IKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQ 132 (605)
T ss_dssp TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC-----CCCCTTSTTCTTCCEEECTTSCCCCCGGGGGCTT
T ss_pred HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC-----CCCChhhccCCCCCEEEecCCCCCCCccccCCCc
Confidence 46677777777777777665433 4444444444444333 3344443356777777777776654 345566
Q ss_pred ccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccccCCccEEEccccCCccCCcccccCccCCEEeccCCcC
Q 025516 134 LVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKR 213 (251)
Q Consensus 134 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~ 213 (251)
|+.|+|++|.+.+. ..++.+++|+.|++++|.+.+..|-..+++|+.|+|++|.++.+| .+..+++|+.|+|++|++
T Consensus 133 L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 133 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp CSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEE
T ss_pred cCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcC
Confidence 77777777764433 446667777777777776655545223667777777777777664 466677777777777765
Q ss_pred Ccc
Q 025516 214 LKS 216 (251)
Q Consensus 214 ~~~ 216 (251)
...
T Consensus 210 ~~~ 212 (605)
T 1m9s_A 210 LNK 212 (605)
T ss_dssp ECC
T ss_pred cCC
Confidence 543
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=3.1e-17 Score=133.60 Aligned_cols=167 Identities=20% Similarity=0.214 Sum_probs=131.5
Q ss_pred CceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCc
Q 025516 36 EKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKL 115 (251)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L 115 (251)
.+++.+.+..+.+..+ ..+..+++|+.|++++|.+.+..+ +..+.+|+.++++.|.+ ..++....+++|
T Consensus 46 ~~L~~L~l~~~~i~~~----~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l-----~~~~~l~~l~~L 114 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV----QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV-----KDLSSLKDLKKL 114 (291)
T ss_dssp HTCCEEECTTSCCCCC----TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC-----CCGGGGTTCTTC
T ss_pred CcccEEEccCCCcccC----hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC-----CCChhhccCCCC
Confidence 4456666666655444 258889999999999999987544 66666666665555544 455555578999
Q ss_pred eEeecCCCcccc---ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccccCCccEEEccccCCcc
Q 025516 116 MFLEVPNSDIEQ---LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEE 192 (251)
Q Consensus 116 ~~L~l~~n~i~~---l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~i~~ 192 (251)
++|++++|++.. +..+++|++|++++|.+.+. ..++.+++|++|++++|.+.+..+-..+++|+.|++++|.++.
T Consensus 115 ~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 115 KSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp CEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB
T ss_pred CEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCC
Confidence 999999999875 55678999999999985553 5688999999999999987766553338999999999999999
Q ss_pred CCcccccCccCCEEeccCCcCCcc
Q 025516 193 LPSSFELLLRLWLLDLSDCKRLKS 216 (251)
Q Consensus 193 lp~~~~~l~~L~~L~l~~n~~~~~ 216 (251)
+|. +..+++|+.|++++|++...
T Consensus 193 l~~-l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 193 LRA-LAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CGG-GTTCTTCSEEEEEEEEEECC
T ss_pred Chh-hccCCCCCEEECcCCcccCC
Confidence 875 88999999999999987653
No 96
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.71 E-value=8e-19 Score=147.28 Aligned_cols=43 Identities=19% Similarity=0.286 Sum_probs=21.3
Q ss_pred eEEEEeecCCcccccCCc----hhhhcCC-CccEEEeecccCCCCCcccc
Q 025516 38 IEGICLDLSKVKEIPLNP----NTFAKMR-KLRFLKFYSSSFNGENRCKV 82 (251)
Q Consensus 38 ~~~~~l~~~~~~~~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~~~~l 82 (251)
++.+.+..+.+.... + ..|..++ +|+.|++++|.+.+..+..+
T Consensus 24 L~~L~Ls~n~l~~~~--~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 71 (362)
T 3goz_A 24 VTSLDLSLNNLYSIS--TVELIQAFANTPASVTSLNLSGNSLGFKNSDEL 71 (362)
T ss_dssp CCEEECTTSCGGGSC--HHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHH
T ss_pred ceEEEccCCCCChHH--HHHHHHHHHhCCCceeEEECcCCCCCHHHHHHH
Confidence 555555444443322 2 4555555 56666666665554443333
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.71 E-value=3.9e-19 Score=150.33 Aligned_cols=211 Identities=13% Similarity=0.066 Sum_probs=150.1
Q ss_pred CCceEEEEeecCCcccccC--CchhhhcCCCccEEEeecccCC---CCCcccc-------ccCCcceecceeEEeeccCC
Q 025516 35 TEKIEGICLDLSKVKEIPL--NPNTFAKMRKLRFLKFYSSSFN---GENRCKV-------SHLQDLRFAEVKYLHWHGYP 102 (251)
Q Consensus 35 ~~~~~~~~l~~~~~~~~~~--~~~~~~~l~~L~~L~l~~n~~~---~~~~~~l-------~~l~~l~~l~L~~~~l~~~~ 102 (251)
...++.+.+..+.+..... .+..+..+++|+.|++++|.+. +..+..+ ..+.+|+.++|+.|.+.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 4567777777766543321 1234668999999999987543 2223233 45566666666666555432
Q ss_pred CCCCCCCC-CcCCceEeecCCCcccc-----ccC----c---------CCccEEEcCCCcCC-cccc---CccccCCCcc
Q 025516 103 LKSLPSNH-SAEKLMFLEVPNSDIEQ-----LWN----S---------VKLVILNLSGSKSL-KSLP---AGIFNLEFLT 159 (251)
Q Consensus 103 ~~~~~~~~-~l~~L~~L~l~~n~i~~-----l~~----~---------~~L~~L~l~~n~~~-~~~~---~~~~~l~~L~ 159 (251)
+..++..+ .+++|++|++++|.+.. ++. + ++|++|++++|.+. ...+ ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 22344444 57899999999999852 333 2 89999999999866 3444 4566789999
Q ss_pred EEecCCCCCCC-----CCC-cc-ccCCccEEEccccCC-----ccCCcccccCccCCEEeccCCcCCcc----Ccccc--
Q 025516 160 ELDLSGCSKLK-----RLP-EI-SSGNIGQLFLSGTAI-----EELPSSFELLLRLWLLDLSDCKRLKS----LPSSL-- 221 (251)
Q Consensus 160 ~L~l~~n~~~~-----~~~-~~-~~~~L~~L~l~~n~i-----~~lp~~~~~l~~L~~L~l~~n~~~~~----~p~~~-- 221 (251)
+|++++|.+.. ..+ .. .+++|+.|++++|.+ ..+|..+..+++|+.|++++|.+... +|..+
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 99999997652 223 22 278999999999999 45788889999999999999998765 56666
Q ss_pred cCCCCCCEEeccCCcCCC----CCChhh
Q 025516 222 CKLKSLELLSLRGCSNLQ----RLPDRL 245 (251)
Q Consensus 222 ~~l~~L~~L~l~~n~~~~----~~p~~l 245 (251)
+.+++|++|++++|.+.+ .+|..+
T Consensus 271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l 298 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIELDAVRTLKTVI 298 (386)
T ss_dssp CSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred ccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence 449999999999998776 477766
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=1e-16 Score=142.66 Aligned_cols=171 Identities=21% Similarity=0.233 Sum_probs=136.4
Q ss_pred hhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCcccc---ccCcCC
Q 025516 57 TFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQ---LWNSVK 133 (251)
Q Consensus 57 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~---l~~~~~ 133 (251)
.+..+.+|+.|++++|.+.... .+..+.+|+ .++++++.+..++....+++|+.|++++|.+.. +..+++
T Consensus 38 ~~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~-----~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~ 110 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIKSVQ--GIQYLPNVT-----KLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKK 110 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCCCCT--TGGGCTTCC-----EEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTTSTTCTT
T ss_pred chhcCCCCCEEECcCCCCCCCh--HHccCCCCC-----EEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChhhccCCC
Confidence 3567899999999999877532 355555544 455555555556654478999999999999875 556778
Q ss_pred ccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc-cCCccEEEccccCCccCCcccccCccCCEEeccCCc
Q 025516 134 LVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCK 212 (251)
Q Consensus 134 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~ 212 (251)
|+.|+|++|.+.+ + ..++.+++|+.|++++|.+... +... +++|+.|+|++|.++.+++ +..+++|+.|+|++|.
T Consensus 111 L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 111 LKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp CCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred CCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCC
Confidence 9999999998554 4 4588999999999999987665 4333 8999999999999998876 8899999999999999
Q ss_pred CCccCcccccCCCCCCEEeccCCcCCCC
Q 025516 213 RLKSLPSSLCKLKSLELLSLRGCSNLQR 240 (251)
Q Consensus 213 ~~~~~p~~~~~l~~L~~L~l~~n~~~~~ 240 (251)
+.+ + ..+..+++|+.|++++|++.+.
T Consensus 187 i~~-l-~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 187 ISD-L-RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCB-C-GGGTTCTTCSEEECCSEEEECC
T ss_pred CCC-C-hHHccCCCCCEEEccCCcCcCC
Confidence 765 3 4589999999999999877653
No 99
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.70 E-value=5.3e-18 Score=140.52 Aligned_cols=178 Identities=22% Similarity=0.204 Sum_probs=103.4
Q ss_pred chhhhcC--CCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCC-CcCCceEeecCCCccc-----
Q 025516 55 PNTFAKM--RKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH-SAEKLMFLEVPNSDIE----- 126 (251)
Q Consensus 55 ~~~~~~l--~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l~~L~~L~l~~n~i~----- 126 (251)
+..+..+ ++++.+++++|.+.+..+. +..+.+++.++++.+.+.+. .++..+ .+++|++|++++|.+.
T Consensus 61 ~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~---~~~~~~~~~~~L~~L~L~~~~l~~~~~~ 136 (336)
T 2ast_B 61 PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS---TLHGILSQCSKLQNLSLEGLRLSDPIVN 136 (336)
T ss_dssp HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH---HHHHHHTTBCCCSEEECTTCBCCHHHHH
T ss_pred HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH---HHHHHHhhCCCCCEEeCcCcccCHHHHH
Confidence 4556666 7777777777776665443 33455555555555554331 022222 4667777777777664
Q ss_pred cccCcCCccEEEcCCC-cCCc-cccCccccCCCccEEecCCC-CCCCC-CCccc--cC-CccEEEccccC--Cc--cCCc
Q 025516 127 QLWNSVKLVILNLSGS-KSLK-SLPAGIFNLEFLTELDLSGC-SKLKR-LPEIS--SG-NIGQLFLSGTA--IE--ELPS 195 (251)
Q Consensus 127 ~l~~~~~L~~L~l~~n-~~~~-~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~--~~-~L~~L~l~~n~--i~--~lp~ 195 (251)
.+..+++|++|++++| .+.+ .++..++++++|++|++++| .+... ++... ++ +|++|++++|. ++ .+|.
T Consensus 137 ~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~ 216 (336)
T 2ast_B 137 TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST 216 (336)
T ss_dssp HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH
Confidence 3455667777777776 3332 24554556677777777777 43321 22222 55 67777777663 32 4555
Q ss_pred ccccCccCCEEeccCCc-CCccCcccccCCCCCCEEeccCCc
Q 025516 196 SFELLLRLWLLDLSDCK-RLKSLPSSLCKLKSLELLSLRGCS 236 (251)
Q Consensus 196 ~~~~l~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~L~l~~n~ 236 (251)
.+..+++|+.|++++|. +....+..++.+++|++|++++|.
T Consensus 217 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 217 LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 55666667777776666 444555566666666666666664
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.69 E-value=3.4e-16 Score=130.66 Aligned_cols=198 Identities=22% Similarity=0.261 Sum_probs=130.1
Q ss_pred CceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCC-CccccccCCcce-ecceeEEeeccCCCCCCCC-CC-C
Q 025516 36 EKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGE-NRCKVSHLQDLR-FAEVKYLHWHGYPLKSLPS-NH-S 111 (251)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~l~-~l~L~~~~l~~~~~~~~~~-~~-~ 111 (251)
..++.+.+..++++.+ .+.+|.++++|++|++++|.+.+. .+.+|..+..+. .+.+..|.+. .++. .+ .
T Consensus 30 ~~l~~L~Ls~N~i~~i--~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~-----~l~~~~f~~ 102 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVI--QKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-----YINPEAFQN 102 (350)
T ss_dssp TTCSEEEEESCCCSEE--CTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC-----EECTTSBCC
T ss_pred CCCCEEEccCCcCCCc--CHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc-----ccCchhhhh
Confidence 4577777877777654 367899999999999999997653 344566666654 3344444443 4433 23 6
Q ss_pred cCCceEeecCCCccccccC-----cCCccEEEcCCCcCCccccC-ccccCC-CccEEecCCCCCCCCCCccc-cCCccEE
Q 025516 112 AEKLMFLEVPNSDIEQLWN-----SVKLVILNLSGSKSLKSLPA-GIFNLE-FLTELDLSGCSKLKRLPEIS-SGNIGQL 183 (251)
Q Consensus 112 l~~L~~L~l~~n~i~~l~~-----~~~L~~L~l~~n~~~~~~~~-~~~~l~-~L~~L~l~~n~~~~~~~~~~-~~~L~~L 183 (251)
+++|++|++++|++..++. ..++..|++.++.....++. .+..+. .++.|++++|.+....+..+ ..+|+++
T Consensus 103 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l 182 (350)
T 4ay9_X 103 LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDEL 182 (350)
T ss_dssp CTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEE
T ss_pred ccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHH
Confidence 8889999999988875543 33567777766544555443 444443 57788888887654333333 4567888
Q ss_pred Ecc-ccCCccCCc-ccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCCh
Q 025516 184 FLS-GTAIEELPS-SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPD 243 (251)
Q Consensus 184 ~l~-~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~ 243 (251)
++. +|.++.+|. .+.++++|+.|++++|++. .+|. ..+.+|+.|.+.+++.++.+|.
T Consensus 183 ~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~--~~~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 183 NLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPS--YGLENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp ECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCS--SSCTTCCEEECTTCTTCCCCCC
T ss_pred hhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccCh--hhhccchHhhhccCCCcCcCCC
Confidence 876 466777776 4577888888888888754 3443 2355666666666677777773
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.68 E-value=5.5e-16 Score=129.96 Aligned_cols=167 Identities=20% Similarity=0.115 Sum_probs=117.6
Q ss_pred cEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCC-C--CcCCceEeecCCCcccc-----ccCcCCccE
Q 025516 65 RFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSN-H--SAEKLMFLEVPNSDIEQ-----LWNSVKLVI 136 (251)
Q Consensus 65 ~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~-~--~l~~L~~L~l~~n~i~~-----l~~~~~L~~ 136 (251)
+.++++++.+.... ..+ +..++. ++++++.+..++.. + .+.+|++|++++|+|.. +..+++|++
T Consensus 21 ~~l~c~~~~l~~iP-~~~--~~~l~~-----L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~ 92 (361)
T 2xot_A 21 NILSCSKQQLPNVP-QSL--PSYTAL-----LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRY 92 (361)
T ss_dssp TEEECCSSCCSSCC-SSC--CTTCSE-----EECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CEEEeCCCCcCccC-ccC--CCCCCE-----EECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCE
Confidence 57888888776532 222 223334 44444444445443 2 67888999999988864 445678999
Q ss_pred EEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCccc----ccCccCCEEeccC
Q 025516 137 LNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPSSF----ELLLRLWLLDLSD 210 (251)
Q Consensus 137 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~~~----~~l~~L~~L~l~~ 210 (251)
|++++|.+....+..+.++++|++|++++|.+....+..+ +++|+.|++++|.++.+|..+ ..+++|+.|+|++
T Consensus 93 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 93 LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS 172 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS
T ss_pred EECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC
Confidence 9999888655555667788889999999888766555444 788899999999888888754 5688889999998
Q ss_pred CcCCccCcccccCCCC--CCEEeccCCcCCC
Q 025516 211 CKRLKSLPSSLCKLKS--LELLSLRGCSNLQ 239 (251)
Q Consensus 211 n~~~~~~p~~~~~l~~--L~~L~l~~n~~~~ 239 (251)
|++....+..+..++. ++.|++++|++..
T Consensus 173 N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 173 NKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp SCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 8876555567777776 4788888887654
No 102
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.68 E-value=4.1e-18 Score=141.22 Aligned_cols=175 Identities=19% Similarity=0.207 Sum_probs=115.6
Q ss_pred hhcCCCccEEEeecccCCCC-CccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCC-cccc------cc
Q 025516 58 FAKMRKLRFLKFYSSSFNGE-NRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNS-DIEQ------LW 129 (251)
Q Consensus 58 ~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n-~i~~------l~ 129 (251)
+..+++|+.|++++|.+.+. .+..+..+++|+.++++.+.+.+..+..+. .+++|++|++++| .+++ +.
T Consensus 89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~---~~~~L~~L~L~~~~~l~~~~l~~~~~ 165 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA---KNSNLVRLNLSGCSGFSEFALQTLLS 165 (336)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT---TCTTCSEEECTTCBSCCHHHHHHHHH
T ss_pred hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh---cCCCCCEEECCCCCCCCHHHHHHHHh
Confidence 44678888888888877653 344455666666666666554432111121 4778888888888 5542 44
Q ss_pred CcCCccEEEcCCC-cCCcc-ccCccccCC-CccEEecCCCC--CC-CCCCccc--cCCccEEEccccC-Cc-cCCccccc
Q 025516 130 NSVKLVILNLSGS-KSLKS-LPAGIFNLE-FLTELDLSGCS--KL-KRLPEIS--SGNIGQLFLSGTA-IE-ELPSSFEL 199 (251)
Q Consensus 130 ~~~~L~~L~l~~n-~~~~~-~~~~~~~l~-~L~~L~l~~n~--~~-~~~~~~~--~~~L~~L~l~~n~-i~-~lp~~~~~ 199 (251)
.+++|++|++++| .+.+. ++..++.++ +|++|++++|. +. ..++... +++|++|++++|. ++ ..+..+..
T Consensus 166 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 245 (336)
T 2ast_B 166 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ 245 (336)
T ss_dssp HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG
T ss_pred cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC
Confidence 5778888888888 54443 456667788 88888888884 22 2233322 7788888888888 55 55667778
Q ss_pred CccCCEEeccCCc-CCccCcccccCCCCCCEEeccCC
Q 025516 200 LLRLWLLDLSDCK-RLKSLPSSLCKLKSLELLSLRGC 235 (251)
Q Consensus 200 l~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~L~l~~n 235 (251)
+++|+.|++++|. +.......++++++|++|++++|
T Consensus 246 l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 246 LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 8888888888885 22222235677888888888887
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.68 E-value=3.5e-16 Score=131.16 Aligned_cols=148 Identities=16% Similarity=0.097 Sum_probs=85.9
Q ss_pred CCccEEEeecccCCCCCccccc-cCCcceecceeEEeeccCCCCCCCC-CC-CcCCceEeecCCCcccc-----ccCcCC
Q 025516 62 RKLRFLKFYSSSFNGENRCKVS-HLQDLRFAEVKYLHWHGYPLKSLPS-NH-SAEKLMFLEVPNSDIEQ-----LWNSVK 133 (251)
Q Consensus 62 ~~L~~L~l~~n~~~~~~~~~l~-~l~~l~~l~L~~~~l~~~~~~~~~~-~~-~l~~L~~L~l~~n~i~~-----l~~~~~ 133 (251)
..++.|++++|.+.+..+..+. .+.+|+.++|+.|.+.. ++. .+ .+.+|++|++++|++.. +..+.+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~-----i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 113 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-----ISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQA 113 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCE-----ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCc-----cChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcC
Confidence 3466677777766655554444 45554444444444333 332 12 46677777777776653 334556
Q ss_pred ccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCcc-----ccCCccEEEccccCCccCCc-ccccCcc--CCE
Q 025516 134 LVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEI-----SSGNIGQLFLSGTAIEELPS-SFELLLR--LWL 205 (251)
Q Consensus 134 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-----~~~~L~~L~l~~n~i~~lp~-~~~~l~~--L~~ 205 (251)
|++|+|++|.+....|..+.++++|++|++++|.+.+..+.. .+++|+.|++++|.++.+|. .+..++. ++.
T Consensus 114 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~ 193 (361)
T 2xot_A 114 LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTT
T ss_pred CCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcce
Confidence 777777776655555666666777777777777654432222 15667777777777776663 3455555 366
Q ss_pred EeccCCcCC
Q 025516 206 LDLSDCKRL 214 (251)
Q Consensus 206 L~l~~n~~~ 214 (251)
|++++|++.
T Consensus 194 l~l~~N~~~ 202 (361)
T 2xot_A 194 LYLHNNPLE 202 (361)
T ss_dssp EECCSSCEE
T ss_pred EEecCCCcc
Confidence 677766654
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.67 E-value=8.1e-16 Score=120.14 Aligned_cols=134 Identities=22% Similarity=0.224 Sum_probs=114.3
Q ss_pred eEeecCCCccccccC--cCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCc
Q 025516 116 MFLEVPNSDIEQLWN--SVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIE 191 (251)
Q Consensus 116 ~~L~l~~n~i~~l~~--~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~ 191 (251)
+.++++++++..++. ..+++.|++++|.+.+..+..+.++++|++|++++|.+.+..|..+ +++|++|++++|.++
T Consensus 14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence 567888998887765 3579999999998666666688899999999999999877666654 899999999999999
Q ss_pred cCCcc-cccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhcc
Q 025516 192 ELPSS-FELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYR 249 (251)
Q Consensus 192 ~lp~~-~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~ 249 (251)
.+|.. +.++++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..++.+.
T Consensus 94 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 152 (220)
T 2v9t_B 94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCC
Confidence 99875 58899999999999999888889999999999999999888766655566543
No 105
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.67 E-value=3.2e-16 Score=130.82 Aligned_cols=183 Identities=19% Similarity=0.103 Sum_probs=138.5
Q ss_pred CCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCC-C-CcCCceE-eecCCCcccc-----ccCcC
Q 025516 61 MRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSN-H-SAEKLMF-LEVPNSDIEQ-----LWNSV 132 (251)
Q Consensus 61 l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~-~-~l~~L~~-L~l~~n~i~~-----l~~~~ 132 (251)
.++++.|++++|.++...+.+|..+.+|+.++|++|.+.. .++.. + ++.++.+ +.+.+|++.. +..++
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~----~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~ 104 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE----VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP 104 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCC----EECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCT
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCC----ccChhHhhcchhhhhhhcccCCcccccCchhhhhcc
Confidence 4689999999999998777788888888877777776533 34432 2 5777665 5566788764 45678
Q ss_pred CccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc----cCCccEEEccccCCccCCcccccCccCCEEec
Q 025516 133 KLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS----SGNIGQLFLSGTAIEELPSSFELLLRLWLLDL 208 (251)
Q Consensus 133 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~----~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l 208 (251)
+|++|++++|.+....+..+....++..+++.++...+.++... ...++.|++++|+++.+|.......+|+.+++
T Consensus 105 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l 184 (350)
T 4ay9_X 105 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNL 184 (350)
T ss_dssp TCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEEC
T ss_pred ccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhh
Confidence 99999999998665555555567788899998876666655432 34688999999999999988777889999999
Q ss_pred cCCcCCccCc-ccccCCCCCCEEeccCCcCCCCCChh-hhhc
Q 025516 209 SDCKRLKSLP-SSLCKLKSLELLSLRGCSNLQRLPDR-LASY 248 (251)
Q Consensus 209 ~~n~~~~~~p-~~~~~l~~L~~L~l~~n~~~~~~p~~-l~~l 248 (251)
++|...+.+| ..++.+++|++|++++|++. .+|.+ +..+
T Consensus 185 ~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~~~~L 225 (350)
T 4ay9_X 185 SDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENL 225 (350)
T ss_dssp TTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSSSCTTC
T ss_pred ccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChhhhccc
Confidence 8766677777 46799999999999997654 67753 4433
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.67 E-value=1.1e-15 Score=119.26 Aligned_cols=134 Identities=16% Similarity=0.121 Sum_probs=114.4
Q ss_pred eEeecCCCccccccC--cCCccEEEcCCCcCCcccc-CccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCC
Q 025516 116 MFLEVPNSDIEQLWN--SVKLVILNLSGSKSLKSLP-AGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAI 190 (251)
Q Consensus 116 ~~L~l~~n~i~~l~~--~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i 190 (251)
+.+++++|.+..++. ...+++|++++|.+.+..+ ..++++++|++|++++|.+.+..+..+ +++|++|++++|.+
T Consensus 14 ~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence 578999999988774 3468999999998666544 447889999999999998776655433 89999999999999
Q ss_pred ccCCc-ccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhcc
Q 025516 191 EELPS-SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYR 249 (251)
Q Consensus 191 ~~lp~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~ 249 (251)
+.++. .+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..++.+.
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 153 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH 153 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCT
T ss_pred CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCC
Confidence 98876 478999999999999999888899999999999999999998887788877654
No 107
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=1.4e-17 Score=151.43 Aligned_cols=183 Identities=19% Similarity=0.142 Sum_probs=102.2
Q ss_pred CCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCC-CcCCceEeecCCCccccc----cCcCCccE
Q 025516 62 RKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH-SAEKLMFLEVPNSDIEQL----WNSVKLVI 136 (251)
Q Consensus 62 ~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l~~L~~L~l~~n~i~~l----~~~~~L~~ 136 (251)
+.++.|.+.+|.+..... .+-....|..+.+....+..+.+...+..+ .+..|+.|++++|.+..+ ..+.+|++
T Consensus 173 ~~~~~l~L~~n~~~~~~~-~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQ-ALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CccceEEeeCCCCCcchh-hHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 456777777766554211 111111222222333333333333334334 578899999999888643 45778999
Q ss_pred EEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCcccccCccCCEEeccCCcCC
Q 025516 137 LNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRL 214 (251)
Q Consensus 137 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~ 214 (251)
|+|++|.+. .+|..++++++|++|++++|.+. .+|..+ +++|++|+|++|.++.+|..++.+++|+.|+|++|.+.
T Consensus 252 L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 252 LYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred EEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence 999998755 78888888999999999999876 666644 78899999999999989888889999999999999988
Q ss_pred ccCcccccCCCC-CCEEeccCCcCCCCCChhhhh
Q 025516 215 KSLPSSLCKLKS-LELLSLRGCSNLQRLPDRLAS 247 (251)
Q Consensus 215 ~~~p~~~~~l~~-L~~L~l~~n~~~~~~p~~l~~ 247 (251)
+.+|..+..+.. +..+++++|.+.+.+|..+..
T Consensus 330 ~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~ 363 (727)
T 4b8c_D 330 KQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRF 363 (727)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---
T ss_pred CCChHHHhhcchhhhHHhhccCcccCcCccccce
Confidence 877776644321 122456666666666655443
No 108
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.67 E-value=1.1e-17 Score=140.22 Aligned_cols=190 Identities=12% Similarity=-0.001 Sum_probs=122.6
Q ss_pred chhhhcCCCccEEEeecccCCCCCc----cccccCC-cceecceeEEeeccCCCCCCCCCC-C-cCCceEeecCCCcccc
Q 025516 55 PNTFAKMRKLRFLKFYSSSFNGENR----CKVSHLQ-DLRFAEVKYLHWHGYPLKSLPSNH-S-AEKLMFLEVPNSDIEQ 127 (251)
Q Consensus 55 ~~~~~~l~~L~~L~l~~n~~~~~~~----~~l~~l~-~l~~l~L~~~~l~~~~~~~~~~~~-~-l~~L~~L~l~~n~i~~ 127 (251)
+..+...++|+.|++++|.+.+..+ ..+..+. .++.++|+.|.+.+.....+...+ . ..+|++|++++|++..
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 94 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSY 94 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCCh
Confidence 5555566679999999999887665 4555555 677777777666653322222111 1 2788999999998864
Q ss_pred c---------cCc-CCccEEEcCCCcCCccccCccc----c-CCCccEEecCCCCCCCCCCc----cc--c-CCccEEEc
Q 025516 128 L---------WNS-VKLVILNLSGSKSLKSLPAGIF----N-LEFLTELDLSGCSKLKRLPE----IS--S-GNIGQLFL 185 (251)
Q Consensus 128 l---------~~~-~~L~~L~l~~n~~~~~~~~~~~----~-l~~L~~L~l~~n~~~~~~~~----~~--~-~~L~~L~l 185 (251)
. ... ++|++|++++|.+....+..++ . .++|++|++++|.+...... .. . ++|++|++
T Consensus 95 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 174 (362)
T 3goz_A 95 KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNL 174 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeee
Confidence 2 233 6888999988886554443333 3 35888888888876532221 11 2 37888888
Q ss_pred cccCCccCCc-----ccccC-ccCCEEeccCCcCCcc----CcccccC-CCCCCEEeccCCcCCCCCChh
Q 025516 186 SGTAIEELPS-----SFELL-LRLWLLDLSDCKRLKS----LPSSLCK-LKSLELLSLRGCSNLQRLPDR 244 (251)
Q Consensus 186 ~~n~i~~lp~-----~~~~l-~~L~~L~l~~n~~~~~----~p~~~~~-l~~L~~L~l~~n~~~~~~p~~ 244 (251)
++|.++.... .+..+ ++|+.|++++|.+... ++..+.. .++|++|++++|.+.+.-+..
T Consensus 175 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 244 (362)
T 3goz_A 175 RGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLEN 244 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHH
T ss_pred cCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHH
Confidence 8888874432 33444 4888888888886552 4445544 457888888887766554433
No 109
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=1.1e-15 Score=116.75 Aligned_cols=127 Identities=20% Similarity=0.154 Sum_probs=85.9
Q ss_pred eEeecCCCccccccC--cCCccEEEcCCCcCCccccC-ccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCC
Q 025516 116 MFLEVPNSDIEQLWN--SVKLVILNLSGSKSLKSLPA-GIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAI 190 (251)
Q Consensus 116 ~~L~l~~n~i~~l~~--~~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i 190 (251)
++++++++++..++. ..++++|++++|.+.+..+. .++.+++|++|++++|.+.+..|..+ +++|++|++++|++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90 (192)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence 445555555554443 22677777777764444333 36677777777777777666655543 67777777777777
Q ss_pred ccCCc-ccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCC
Q 025516 191 EELPS-SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLP 242 (251)
Q Consensus 191 ~~lp~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p 242 (251)
+.++. .+.++++|+.|++++|++.+..|..+..+++|++|++++|++.+..+
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 76554 46777888888888888777777777788888888888877776554
No 110
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=8.2e-16 Score=114.90 Aligned_cols=130 Identities=22% Similarity=0.234 Sum_probs=104.4
Q ss_pred cCCceEeecCCCccc--cc----cCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEE
Q 025516 112 AEKLMFLEVPNSDIE--QL----WNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQL 183 (251)
Q Consensus 112 l~~L~~L~l~~n~i~--~l----~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L 183 (251)
..+|++|++++|++. .+ ..+++|++|++++|.+.+. ..++.+++|++|++++|.+.+.+|... +++|+.|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 356777777777765 43 4467899999999885544 668889999999999998877677654 8899999
Q ss_pred EccccCCccCC--cccccCccCCEEeccCCcCCccCc---ccccCCCCCCEEeccCCcCCCCCChh
Q 025516 184 FLSGTAIEELP--SSFELLLRLWLLDLSDCKRLKSLP---SSLCKLKSLELLSLRGCSNLQRLPDR 244 (251)
Q Consensus 184 ~l~~n~i~~lp--~~~~~l~~L~~L~l~~n~~~~~~p---~~~~~l~~L~~L~l~~n~~~~~~p~~ 244 (251)
++++|.++.+| ..+..+++|+.|++++|++.+..+ ..+..+++|++|++++|... ++|++
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 99999999876 678899999999999999776554 47899999999999997554 56654
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=9e-19 Score=154.88 Aligned_cols=178 Identities=20% Similarity=0.119 Sum_probs=127.5
Q ss_pred hcCCCccEEEeecccCCCCCccccccCCcceecceeEEee--------cc-CCCCCCCCCC-CcCCceEee-cCCCc---
Q 025516 59 AKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHW--------HG-YPLKSLPSNH-SAEKLMFLE-VPNSD--- 124 (251)
Q Consensus 59 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l--------~~-~~~~~~~~~~-~l~~L~~L~-l~~n~--- 124 (251)
..+++|+.|++++|.+. ..|..++.+..|+.++++.+.. .. +..+..|..+ .+.+|+.|+ ++.|.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 45777888888888765 3455666666666665543320 00 0111222222 355666666 44443
Q ss_pred ----------cccccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCcc
Q 025516 125 ----------IEQLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEE 192 (251)
Q Consensus 125 ----------i~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~ 192 (251)
+..++. ..|++|++++|.+. .+|. ++.+++|+.|++++|.+. .+|..+ +++|+.|++++|.++.
T Consensus 425 L~~l~l~~n~i~~l~~-~~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 425 LRSKFLLENSVLKMEY-ADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp HHHHHHHHHHHHHHHH-TTCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred hhhhhhhcccccccCc-cCceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence 333332 25899999999754 4776 889999999999999876 666644 8899999999999999
Q ss_pred CCcccccCccCCEEeccCCcCCccC-cccccCCCCCCEEeccCCcCCCCCC
Q 025516 193 LPSSFELLLRLWLLDLSDCKRLKSL-PSSLCKLKSLELLSLRGCSNLQRLP 242 (251)
Q Consensus 193 lp~~~~~l~~L~~L~l~~n~~~~~~-p~~~~~l~~L~~L~l~~n~~~~~~p 242 (251)
+| .++.+++|+.|++++|.+.+.. |..++.+++|+.|++++|++.+..|
T Consensus 501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 88 7899999999999999987776 8999999999999999988765443
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.65 E-value=3.1e-15 Score=117.51 Aligned_cols=133 Identities=20% Similarity=0.100 Sum_probs=111.1
Q ss_pred ceEeecCCCccccccC--cCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCC
Q 025516 115 LMFLEVPNSDIEQLWN--SVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAI 190 (251)
Q Consensus 115 L~~L~l~~n~i~~l~~--~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i 190 (251)
-+.++.+++++..++. .++|++|++++|.+.+..|..++++++|++|++++|.+....+..+ +++|+.|++++|.+
T Consensus 21 ~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence 5578888888887764 4689999999999888778889999999999999998755444433 88999999999999
Q ss_pred ccCCcc-cccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhc
Q 025516 191 EELPSS-FELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASY 248 (251)
Q Consensus 191 ~~lp~~-~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l 248 (251)
+.+|.. +..+++|+.|++++|.+. .+|..+..+++|++|++++|.+.+..+..+..+
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 158 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRL 158 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred CccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCC
Confidence 988764 689999999999999976 788889999999999999987765444445544
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=1.2e-15 Score=122.34 Aligned_cols=149 Identities=15% Similarity=0.137 Sum_probs=104.7
Q ss_pred hhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCccccccCc--CCc
Q 025516 57 TFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNS--VKL 134 (251)
Q Consensus 57 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~l~~~--~~L 134 (251)
.+..+++|+.|++++|.+.... .+..+.+++.++++ ++.+..++....+++|++|++++|++..++.. .+|
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~-----~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~~~~L 108 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLS-----HNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACL 108 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECC-----SSCCCCCGGGTTCSSCCEEECCSSCCSCCTTCCCSSC
T ss_pred chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECC-----CCccCCChhhccCCCCCEEECCCCccCCcCccccCcc
Confidence 4678899999999999877532 44555554444444 44444555534678888888888888754432 578
Q ss_pred cEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc-cCCccEEEccccCCccCCcccccCccCCEEeccCCcC
Q 025516 135 VILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKR 213 (251)
Q Consensus 135 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~ 213 (251)
++|++++|.+.+ ++ .++++++|++|++++|.+.+. +... +++|+.|++++|.++.+ ..+..+++|+.|++++|++
T Consensus 109 ~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 109 SRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp CEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEE
T ss_pred cEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-hHHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcc
Confidence 888888887444 33 477788888888888876543 3332 78888888888888877 5677788888888888876
Q ss_pred Ccc
Q 025516 214 LKS 216 (251)
Q Consensus 214 ~~~ 216 (251)
...
T Consensus 185 ~~~ 187 (263)
T 1xeu_A 185 VNE 187 (263)
T ss_dssp ECC
T ss_pred cCC
Confidence 544
No 114
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.64 E-value=9.6e-19 Score=150.98 Aligned_cols=104 Identities=17% Similarity=0.115 Sum_probs=55.4
Q ss_pred CcCCceEeecCCCccccc----------cCcCCccEEEcCCCcCCcc----ccCccccCCCccEEecCCCCCCCCCCccc
Q 025516 111 SAEKLMFLEVPNSDIEQL----------WNSVKLVILNLSGSKSLKS----LPAGIFNLEFLTELDLSGCSKLKRLPEIS 176 (251)
Q Consensus 111 ~l~~L~~L~l~~n~i~~l----------~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 176 (251)
.+++|++|++++|.+... ...++|++|++++|.+... ++..+..+++|++|++++|.+....+...
T Consensus 225 ~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 304 (461)
T 1z7x_W 225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 304 (461)
T ss_dssp HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred hCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHH
Confidence 356777777777776431 1356777777777764442 45555566777777777765432111100
Q ss_pred -------cCCccEEEccccCCcc-----CCcccccCccCCEEeccCCcCC
Q 025516 177 -------SGNIGQLFLSGTAIEE-----LPSSFELLLRLWLLDLSDCKRL 214 (251)
Q Consensus 177 -------~~~L~~L~l~~n~i~~-----lp~~~~~l~~L~~L~l~~n~~~ 214 (251)
.++|++|++++|.++. ++..+..+++|+.|++++|.+.
T Consensus 305 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 354 (461)
T 1z7x_W 305 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred HHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence 1355555555555442 2333344445555555555443
No 115
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=1.1e-15 Score=111.86 Aligned_cols=120 Identities=24% Similarity=0.206 Sum_probs=80.7
Q ss_pred CCceEeecCCCccc--cc----cCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEE
Q 025516 113 EKLMFLEVPNSDIE--QL----WNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLF 184 (251)
Q Consensus 113 ~~L~~L~l~~n~i~--~l----~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~ 184 (251)
.+|+.|++++|.+. .+ ..+++|++|++++|.+.+. ..++.+++|++|++++|.+.+.+|... +++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45556666665554 22 3456677777777764443 556677777777777777666555543 67777788
Q ss_pred ccccCCccCC--cccccCccCCEEeccCCcCCccCc---ccccCCCCCCEEeccC
Q 025516 185 LSGTAIEELP--SSFELLLRLWLLDLSDCKRLKSLP---SSLCKLKSLELLSLRG 234 (251)
Q Consensus 185 l~~n~i~~lp--~~~~~l~~L~~L~l~~n~~~~~~p---~~~~~l~~L~~L~l~~ 234 (251)
+++|.++.+| ..++.+++|+.|++++|++.+..+ ..++.+++|++|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8778777654 567778888888888887665544 4677788888887753
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.62 E-value=1.6e-15 Score=121.66 Aligned_cols=167 Identities=17% Similarity=0.181 Sum_probs=129.9
Q ss_pred cCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCcccc---ccCcCCccE
Q 025516 60 KMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQ---LWNSVKLVI 136 (251)
Q Consensus 60 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~---l~~~~~L~~ 136 (251)
.+.++..++++++.+.+.. .+..+.+ |+.++++++.+..++....+++|++|++++|++.+ +..+++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~-----L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSG-----VQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTT-----CSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCc-----CcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCE
Confidence 4566777778888766432 2344444 55556666666677744478999999999999875 456789999
Q ss_pred EEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc-cCCccEEEccccCCccCCcccccCccCCEEeccCCcCCc
Q 025516 137 LNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLK 215 (251)
Q Consensus 137 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~ 215 (251)
|++++|.+. .+|. +.. ++|++|++++|.+.+ ++... +++|+.|++++|+++.++ .+..+++|+.|++++|++.+
T Consensus 90 L~L~~N~l~-~l~~-~~~-~~L~~L~L~~N~l~~-~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 90 LSVNRNRLK-NLNG-IPS-ACLSRLFLDNNELRD-TDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp EECCSSCCS-CCTT-CCC-SSCCEEECCSSCCSB-SGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCB
T ss_pred EECCCCccC-CcCc-ccc-CcccEEEccCCccCC-ChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcc
Confidence 999999854 4554 333 899999999998665 34433 899999999999999887 68899999999999999876
Q ss_pred cCcccccCCCCCCEEeccCCcCCCC
Q 025516 216 SLPSSLCKLKSLELLSLRGCSNLQR 240 (251)
Q Consensus 216 ~~p~~~~~l~~L~~L~l~~n~~~~~ 240 (251)
. ..+..+++|+.|++++|++...
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h--HHhccCCCCCEEeCCCCcccCC
Confidence 5 6689999999999999877654
No 117
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.61 E-value=6.5e-18 Score=145.78 Aligned_cols=38 Identities=32% Similarity=0.225 Sum_probs=19.4
Q ss_pred CccCCEEeccCCcCCcc----CcccccCCCCCCEEeccCCcC
Q 025516 200 LLRLWLLDLSDCKRLKS----LPSSLCKLKSLELLSLRGCSN 237 (251)
Q Consensus 200 l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~~ 237 (251)
+++|+.|++++|.+... ++..+..+++|++|++++|.+
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence 45555555555554432 344444555555555555544
No 118
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=1.1e-14 Score=109.75 Aligned_cols=127 Identities=18% Similarity=0.122 Sum_probs=89.4
Q ss_pred eEeecCCCccccccC--cCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCc
Q 025516 116 MFLEVPNSDIEQLWN--SVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIE 191 (251)
Q Consensus 116 ~~L~l~~n~i~~l~~--~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~ 191 (251)
+.++++++++..++. ..+|++|++++|.+.+..+..++++++|++|++++|.+.+..+..+ +++|++|++++|.++
T Consensus 10 ~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 89 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ 89 (177)
T ss_dssp TEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcc
Confidence 345555555554432 3467888888877555444556778888888888887665444432 778888888888888
Q ss_pred cCCcc-cccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCC
Q 025516 192 ELPSS-FELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLP 242 (251)
Q Consensus 192 ~lp~~-~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p 242 (251)
.+|.. +..+++|+.|++++|.+.+..+..+..+++|++|++++|++.+..|
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 90 SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 77664 5778888888888888765544556788888888888888776554
No 119
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.60 E-value=1.1e-15 Score=115.17 Aligned_cols=124 Identities=15% Similarity=0.139 Sum_probs=91.6
Q ss_pred CcCCceEeecCCCcccccc---CcC-CccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEE
Q 025516 111 SAEKLMFLEVPNSDIEQLW---NSV-KLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLF 184 (251)
Q Consensus 111 ~l~~L~~L~l~~n~i~~l~---~~~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~ 184 (251)
.+.+|+.|++++|+++.++ ... +|++|++++|.+.+ + ..++.+++|++|++++|.+.+..+..+ +++|++|+
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 5667777777777776543 233 78888888887544 3 567778888888888887665443332 78888888
Q ss_pred ccccCCccCCc--ccccCccCCEEeccCCcCCccCccc----ccCCCCCCEEeccCCcC
Q 025516 185 LSGTAIEELPS--SFELLLRLWLLDLSDCKRLKSLPSS----LCKLKSLELLSLRGCSN 237 (251)
Q Consensus 185 l~~n~i~~lp~--~~~~l~~L~~L~l~~n~~~~~~p~~----~~~l~~L~~L~l~~n~~ 237 (251)
+++|.++.+|. .+..+++|+.|++++|++. .+|.. +..+++|++|++++|..
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 88888888876 6788888899999888865 44553 78888899988888753
No 120
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=1.3e-14 Score=110.87 Aligned_cols=121 Identities=21% Similarity=0.207 Sum_probs=73.4
Q ss_pred EeecCCCccccccC--cCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCcc
Q 025516 117 FLEVPNSDIEQLWN--SVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEE 192 (251)
Q Consensus 117 ~L~l~~n~i~~l~~--~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~ 192 (251)
.++++++++..++. ..+|++|++++|.+ ..+|..++++++|++|++++|.+.+..+..+ +++|++|++++|.++.
T Consensus 14 ~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~ 92 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIPRDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92 (193)
T ss_dssp EEECTTSCCSSCCSCCCTTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred EEEcCCCCCCcCCCCCCCCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE
Confidence 34445555444432 23566666666653 3555566666667777777666555444333 5667777777777766
Q ss_pred CCc-ccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCC
Q 025516 193 LPS-SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNL 238 (251)
Q Consensus 193 lp~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~ 238 (251)
++. .+..+++|+.|++++|.+....+..+..+++|++|++++|+..
T Consensus 93 i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 554 4666777777777777765444445666777777777776554
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.57 E-value=4e-15 Score=135.29 Aligned_cols=117 Identities=26% Similarity=0.319 Sum_probs=103.5
Q ss_pred ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCcccccCccCCE
Q 025516 128 LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPSSFELLLRLWL 205 (251)
Q Consensus 128 l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~~~~~l~~L~~ 205 (251)
+..+..|++|+|++|.+ ..+|..++++++|++|++++|.+. .+|..+ +++|+.|+|++|.++.+|..++.+++|+.
T Consensus 220 ~~~l~~L~~L~Ls~n~l-~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQI-FNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297 (727)
T ss_dssp --CCCCCCEEECTTSCC-SCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred hccCCCCcEEECCCCCC-CCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence 55678999999999985 478888889999999999999877 677644 89999999999999999999999999999
Q ss_pred EeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhh
Q 025516 206 LDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLAS 247 (251)
Q Consensus 206 L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~ 247 (251)
|+|++|.+ +.+|..++.+++|++|++++|.+.+.+|..+..
T Consensus 298 L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 298 FYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp EECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred EECCCCCC-CccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 99999986 478888999999999999999999988887754
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=1.1e-14 Score=106.46 Aligned_cols=119 Identities=21% Similarity=0.106 Sum_probs=98.3
Q ss_pred CcCCccEEEcCCCcCC-ccccCccccCCCccEEecCCCCCCCCCCccc-cCCccEEEccccCCcc-CCcccccCccCCEE
Q 025516 130 NSVKLVILNLSGSKSL-KSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-SGNIGQLFLSGTAIEE-LPSSFELLLRLWLL 206 (251)
Q Consensus 130 ~~~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~~n~i~~-lp~~~~~l~~L~~L 206 (251)
...+|+.|++++|.+. +.+|..++.+++|++|++++|.+.+. +... +++|+.|++++|.++. +|..++.+++|+.|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 3467999999999876 58888889999999999999987665 3333 8899999999999997 77777889999999
Q ss_pred eccCCcCCcc-CcccccCCCCCCEEeccCCcCCCCCC---hhhhhcc
Q 025516 207 DLSDCKRLKS-LPSSLCKLKSLELLSLRGCSNLQRLP---DRLASYR 249 (251)
Q Consensus 207 ~l~~n~~~~~-~p~~~~~l~~L~~L~l~~n~~~~~~p---~~l~~l~ 249 (251)
++++|.+.+. .+..++.+++|++|++++|.+.+..+ ..++.++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~ 140 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLP 140 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCT
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCC
Confidence 9999997763 34789999999999999987765444 2455443
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.54 E-value=8.6e-14 Score=106.27 Aligned_cols=120 Identities=20% Similarity=0.160 Sum_probs=82.7
Q ss_pred eccCCCCCCCCCCCcCCceEeecCCCcccc------ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCC
Q 025516 98 WHGYPLKSLPSNHSAEKLMFLEVPNSDIEQ------LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKR 171 (251)
Q Consensus 98 l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~------l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 171 (251)
++++.++.+|..+ ..++++|++++|++.. +..+++|++|++++|.+.+..|..++++++|++|++++|.+.+.
T Consensus 15 ~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 93 (192)
T 1w8a_A 15 CTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI 93 (192)
T ss_dssp CTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEE
T ss_pred cCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCcc
Confidence 3344444455433 1266666666666643 34566788888888877666677788888888888888877666
Q ss_pred CCccc--cCCccEEEccccCCccC-CcccccCccCCEEeccCCcCCccCc
Q 025516 172 LPEIS--SGNIGQLFLSGTAIEEL-PSSFELLLRLWLLDLSDCKRLKSLP 218 (251)
Q Consensus 172 ~~~~~--~~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~~~~~~p 218 (251)
.+..+ +++|++|++++|+++.+ |..+..+++|+.|++++|++....+
T Consensus 94 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 94 SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 55533 67888888888888854 5567788888888888888765443
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.53 E-value=5e-14 Score=105.10 Aligned_cols=118 Identities=22% Similarity=0.108 Sum_probs=96.9
Q ss_pred cCCccEEEcCCCcCC-ccccCccccCCCccEEecCCCCCCCCCCccc-cCCccEEEccccCCcc-CCcccccCccCCEEe
Q 025516 131 SVKLVILNLSGSKSL-KSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-SGNIGQLFLSGTAIEE-LPSSFELLLRLWLLD 207 (251)
Q Consensus 131 ~~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~~n~i~~-lp~~~~~l~~L~~L~ 207 (251)
.++|++|++++|.+. +.+|..+..+++|++|++++|.+... +... +++|++|++++|.++. +|..+..+++|+.|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 468999999999866 58888888999999999999987665 4333 8899999999999997 777777899999999
Q ss_pred ccCCcCCccC-cccccCCCCCCEEeccCCcCCCCCC---hhhhhcc
Q 025516 208 LSDCKRLKSL-PSSLCKLKSLELLSLRGCSNLQRLP---DRLASYR 249 (251)
Q Consensus 208 l~~n~~~~~~-p~~~~~l~~L~~L~l~~n~~~~~~p---~~l~~l~ 249 (251)
+++|.+.+.. +..++.+++|++|++++|.+.+..+ ..++.++
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~ 147 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLP 147 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCc
Confidence 9999976542 2789999999999999988775443 2555443
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.50 E-value=2.9e-13 Score=103.41 Aligned_cols=116 Identities=22% Similarity=0.161 Sum_probs=84.6
Q ss_pred eccCCCCCCCCCCCcCCceEeecCCCcccc----ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCC
Q 025516 98 WHGYPLKSLPSNHSAEKLMFLEVPNSDIEQ----LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLP 173 (251)
Q Consensus 98 l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~----l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 173 (251)
.+++.++.+|..+ ..+|++|++++|++.. +..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+
T Consensus 17 ~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~ 95 (193)
T 2wfh_A 17 CSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP 95 (193)
T ss_dssp CTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred cCCCCCCcCCCCC-CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCH
Confidence 3444444555432 2466777777776654 3456788888888888666666778888888888888888766655
Q ss_pred ccc--cCCccEEEccccCCccCCc-ccccCccCCEEeccCCcCC
Q 025516 174 EIS--SGNIGQLFLSGTAIEELPS-SFELLLRLWLLDLSDCKRL 214 (251)
Q Consensus 174 ~~~--~~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~ 214 (251)
..+ +++|+.|++++|.++.+|. .+..+++|+.|++++|++.
T Consensus 96 ~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 96 RTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred HHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 443 7888899999998888876 4678889999999988764
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.48 E-value=6.5e-13 Score=99.91 Aligned_cols=119 Identities=19% Similarity=0.138 Sum_probs=88.2
Q ss_pred ccCCCCCCCCCCCcCCceEeecCCCcccc-----ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCC
Q 025516 99 HGYPLKSLPSNHSAEKLMFLEVPNSDIEQ-----LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLP 173 (251)
Q Consensus 99 ~~~~~~~~~~~~~l~~L~~L~l~~n~i~~-----l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 173 (251)
.++.+..+|... ..+|++|++++|++.. +..+++|++|++++|.+.+..+..++++++|++|++++|.+.+..+
T Consensus 15 ~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 93 (177)
T 2o6r_A 15 NSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPN 93 (177)
T ss_dssp CSSCCSSCCTTC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cCCCCccCCCCC-CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCH
Confidence 333444454322 3567777777777754 3456789999999988665555557789999999999998776555
Q ss_pred ccc--cCCccEEEccccCCccCCcc-cccCccCCEEeccCCcCCccCc
Q 025516 174 EIS--SGNIGQLFLSGTAIEELPSS-FELLLRLWLLDLSDCKRLKSLP 218 (251)
Q Consensus 174 ~~~--~~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~~~p 218 (251)
..+ +++|++|++++|.++.+|.. +..+++|+.|++++|++....|
T Consensus 94 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 94 GVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred HHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 433 78999999999999988875 4789999999999999876554
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=1.8e-13 Score=102.89 Aligned_cols=99 Identities=16% Similarity=0.151 Sum_probs=76.4
Q ss_pred CceEeecCCCccc---cccCcCCccEEEcCCCcCCccccCc-cccCCCccEEecCCCCCCCCCCc---cc-cCCccEEEc
Q 025516 114 KLMFLEVPNSDIE---QLWNSVKLVILNLSGSKSLKSLPAG-IFNLEFLTELDLSGCSKLKRLPE---IS-SGNIGQLFL 185 (251)
Q Consensus 114 ~L~~L~l~~n~i~---~l~~~~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~---~~-~~~L~~L~l 185 (251)
+|++|++++|++. .+..+++|++|++++|.+. .+|.. ++.+++|++|++++|.+ +.+|. .. +++|+.|++
T Consensus 43 ~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp CCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCCCCcccccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEEEe
Confidence 6666666666664 3556778999999998755 44544 47899999999999976 44443 22 789999999
Q ss_pred cccCCccCCcc----cccCccCCEEeccCCcCC
Q 025516 186 SGTAIEELPSS----FELLLRLWLLDLSDCKRL 214 (251)
Q Consensus 186 ~~n~i~~lp~~----~~~l~~L~~L~l~~n~~~ 214 (251)
++|.++.+|.. +..+++|+.|++++|...
T Consensus 121 ~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred cCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999988875 889999999999998754
No 128
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=1.6e-12 Score=97.67 Aligned_cols=98 Identities=16% Similarity=0.113 Sum_probs=48.8
Q ss_pred eEeecCCCccccccC--cCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCc
Q 025516 116 MFLEVPNSDIEQLWN--SVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIE 191 (251)
Q Consensus 116 ~~L~l~~n~i~~l~~--~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~ 191 (251)
+.++++++++..++. ..+|++|++++|.+.+..|..++++++|++|++++|.+.+..+..+ +++|+.|++++|+++
T Consensus 15 ~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~ 94 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94 (174)
T ss_dssp SEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc
Confidence 455566665555443 2456666666665444445555555555555555554433222221 444555555555554
Q ss_pred cCCcc-cccCccCCEEeccCCcC
Q 025516 192 ELPSS-FELLLRLWLLDLSDCKR 213 (251)
Q Consensus 192 ~lp~~-~~~l~~L~~L~l~~n~~ 213 (251)
.+|.. +..+++|+.|++++|++
T Consensus 95 ~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 95 SIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCB
T ss_pred eeCHHHhccccCCCEEEeCCCCc
Confidence 44432 44444555555554443
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.43 E-value=7.2e-13 Score=117.19 Aligned_cols=172 Identities=14% Similarity=0.115 Sum_probs=130.7
Q ss_pred chhhhcCCCccEEEeeccc-------------CCCCCccccccCCcceecc-eeEE--------eeccCCCCCCCCCCCc
Q 025516 55 PNTFAKMRKLRFLKFYSSS-------------FNGENRCKVSHLQDLRFAE-VKYL--------HWHGYPLKSLPSNHSA 112 (251)
Q Consensus 55 ~~~~~~l~~L~~L~l~~n~-------------~~~~~~~~l~~l~~l~~l~-L~~~--------~l~~~~~~~~~~~~~l 112 (251)
|..++.+++|+.|++++|. ..+..+..+..+..|+.++ ++.+ .+.++.+..++ .
T Consensus 365 p~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~----~ 440 (567)
T 1dce_A 365 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKME----Y 440 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccC----c
Confidence 7788999999999987664 3344444555555665554 3333 23333333332 2
Q ss_pred CCceEeecCCCccccc---cCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc-cCCccEEEcccc
Q 025516 113 EKLMFLEVPNSDIEQL---WNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-SGNIGQLFLSGT 188 (251)
Q Consensus 113 ~~L~~L~l~~n~i~~l---~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~~n 188 (251)
..|+.|++++|+++.+ ..+++|+.|++++|.+. .+|..++++++|++|++++|.+.+ +|... +++|+.|++++|
T Consensus 441 ~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VDGVANLPRLQELLLCNN 518 (567)
T ss_dssp TTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCSS
T ss_pred cCceEEEecCCCCCCCcCccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-CcccCCCCCCcEEECCCC
Confidence 3588999999998755 45678999999999855 889999999999999999998776 66443 899999999999
Q ss_pred CCccC--CcccccCccCCEEeccCCcCCccCcc---cccCCCCCCEEec
Q 025516 189 AIEEL--PSSFELLLRLWLLDLSDCKRLKSLPS---SLCKLKSLELLSL 232 (251)
Q Consensus 189 ~i~~l--p~~~~~l~~L~~L~l~~n~~~~~~p~---~~~~l~~L~~L~l 232 (251)
.++.+ |..++.+++|+.|++++|++.+..|. .+..+++|+.|++
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99987 88999999999999999998766542 2355899999864
No 130
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=1.7e-12 Score=97.05 Aligned_cols=100 Identities=18% Similarity=0.131 Sum_probs=55.8
Q ss_pred ceEeecCCCccccccC--cCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCC
Q 025516 115 LMFLEVPNSDIEQLWN--SVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAI 190 (251)
Q Consensus 115 L~~L~l~~n~i~~l~~--~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i 190 (251)
.+.+++++|++..++. ..+|++|++++|.+.+..|..++++++|++|++++|.+.+..+..+ +++|++|++++|++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l 90 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90 (170)
T ss_dssp TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence 3556666666665543 3456666666666555555556666666666666665544333322 45555555555555
Q ss_pred ccCCc-ccccCccCCEEeccCCcCC
Q 025516 191 EELPS-SFELLLRLWLLDLSDCKRL 214 (251)
Q Consensus 191 ~~lp~-~~~~l~~L~~L~l~~n~~~ 214 (251)
+.+|. .+..+++|+.|++++|++.
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 91 KSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 55544 2455555555555555543
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=1.1e-15 Score=117.29 Aligned_cols=118 Identities=21% Similarity=0.160 Sum_probs=75.1
Q ss_pred cCCceEeecCCCccccc---cCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc-cCCccEEEccc
Q 025516 112 AEKLMFLEVPNSDIEQL---WNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-SGNIGQLFLSG 187 (251)
Q Consensus 112 l~~L~~L~l~~n~i~~l---~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~~ 187 (251)
+++|++|++++|++..+ ..+++|++|++++|.+ ..+|..++.+++|++|++++|.+.+ +|... +++|+.|++++
T Consensus 47 l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l-~~l~~~~~~~~~L~~L~L~~N~l~~-l~~~~~l~~L~~L~l~~ 124 (198)
T 1ds9_A 47 LKACKHLALSTNNIEKISSLSGMENLRILSLGRNLI-KKIENLDAVADTLEELWISYNQIAS-LSGIEKLVNLRVLYMSN 124 (198)
T ss_dssp TTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEE-CSCSSHHHHHHHCSEEEEEEEECCC-HHHHHHHHHSSEEEESE
T ss_pred CCCCCEEECCCCCCccccccccCCCCCEEECCCCCc-ccccchhhcCCcCCEEECcCCcCCc-CCccccCCCCCEEECCC
Confidence 34444444444444332 3345666666666653 3455555556667777777775544 33222 56777777777
Q ss_pred cCCccCCc--ccccCccCCEEeccCCcCCccCcc----------cccCCCCCCEEe
Q 025516 188 TAIEELPS--SFELLLRLWLLDLSDCKRLKSLPS----------SLCKLKSLELLS 231 (251)
Q Consensus 188 n~i~~lp~--~~~~l~~L~~L~l~~n~~~~~~p~----------~~~~l~~L~~L~ 231 (251)
|.++.++. .+..+++|+.|++++|++.+..|. .+..+++|++|+
T Consensus 125 N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 125 NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 88776654 577888888998888887666554 377888888887
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.40 E-value=2.1e-15 Score=115.77 Aligned_cols=113 Identities=23% Similarity=0.225 Sum_probs=94.9
Q ss_pred cccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCcccccCccCC
Q 025516 127 QLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPSSFELLLRLW 204 (251)
Q Consensus 127 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~~~~~l~~L~ 204 (251)
.+..+++|++|++++|.+.+ +| .++++++|++|++++|.+. .+|... +++|++|++++|+++.+| .+..+++|+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-GIEKLVNLR 118 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCC
Confidence 46778899999999998554 77 7889999999999999866 566544 689999999999999987 688999999
Q ss_pred EEeccCCcCCccCc-ccccCCCCCCEEeccCCcCCCCCCh
Q 025516 205 LLDLSDCKRLKSLP-SSLCKLKSLELLSLRGCSNLQRLPD 243 (251)
Q Consensus 205 ~L~l~~n~~~~~~p-~~~~~l~~L~~L~l~~n~~~~~~p~ 243 (251)
.|++++|.+....+ ..+..+++|++|++++|++.+..|.
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred EEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 99999999765332 5789999999999999987665543
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=3.7e-12 Score=95.22 Aligned_cols=104 Identities=25% Similarity=0.212 Sum_probs=67.7
Q ss_pred ccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCcc-cccCccCCEEeccC
Q 025516 134 LVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPSS-FELLLRLWLLDLSD 210 (251)
Q Consensus 134 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~ 210 (251)
.+.+++++|. ...+|..+ .++|++|++++|.+.+..+..+ +++|++|++++|+++.+|.. +.++++|+.|++++
T Consensus 11 ~~~l~~s~n~-l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKS-LASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCC-cCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4567777665 44456554 3567777777776666555433 66777777777777766654 46677777777777
Q ss_pred CcCCccCcccccCCCCCCEEeccCCcCCCC
Q 025516 211 CKRLKSLPSSLCKLKSLELLSLRGCSNLQR 240 (251)
Q Consensus 211 n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~ 240 (251)
|++.+..+..+..+++|++|++++|++...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 776555555567777777777777666543
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.37 E-value=5.1e-12 Score=94.84 Aligned_cols=101 Identities=27% Similarity=0.288 Sum_probs=63.7
Q ss_pred cEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCcc-cccCccCCEEeccCC
Q 025516 135 VILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPSS-FELLLRLWLLDLSDC 211 (251)
Q Consensus 135 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n 211 (251)
+.+++++|. .+.+|..+. ++|++|++++|.+.+..|..+ +++|++|++++|+++.+|.. +.++++|+.|++++|
T Consensus 15 ~~l~~~~n~-l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIR-LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCC-CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 566666655 455565543 567777777776655555433 66677777777777766654 356677777777777
Q ss_pred cCCccCcccccCCCCCCEEeccCCcCC
Q 025516 212 KRLKSLPSSLCKLKSLELLSLRGCSNL 238 (251)
Q Consensus 212 ~~~~~~p~~~~~l~~L~~L~l~~n~~~ 238 (251)
++.+..+..+..+++|++|++++|++.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 655444444666777777777776554
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.32 E-value=1.3e-11 Score=101.84 Aligned_cols=92 Identities=13% Similarity=0.017 Sum_probs=58.7
Q ss_pred CCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCc-ccccCccCC-EEeccCCcCCccCcccccCCCCCCEE
Q 025516 155 LEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPS-SFELLLRLW-LLDLSDCKRLKSLPSSLCKLKSLELL 230 (251)
Q Consensus 155 l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~-~~~~l~~L~-~L~l~~n~~~~~~p~~~~~l~~L~~L 230 (251)
+++|+++++++|.+...-+..+ +.+|+++++..| ++.+++ .|.++++|+ .+++.+ .+...-+.+|.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 5677778887765433222223 667888888776 666665 467777787 787776 5444445677788888888
Q ss_pred eccCCcCCCCCChhhhhc
Q 025516 231 SLRGCSNLQRLPDRLASY 248 (251)
Q Consensus 231 ~l~~n~~~~~~p~~l~~l 248 (251)
++++|++...-+..+..+
T Consensus 303 ~l~~n~i~~I~~~aF~~~ 320 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNG 320 (329)
T ss_dssp EECSSCCCEECTTTTCTT
T ss_pred EeCCCccCccchhhhcCC
Confidence 877755544333344443
No 136
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.25 E-value=5.1e-13 Score=118.58 Aligned_cols=57 Identities=25% Similarity=0.199 Sum_probs=28.3
Q ss_pred cCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCc-ccccCCCCCCEEecc
Q 025516 177 SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLP-SSLCKLKSLELLSLR 233 (251)
Q Consensus 177 ~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~L~l~ 233 (251)
+++|+.|.++++....+|..+..+++|+.|++++|.+..... ..+..+++|++|+++
T Consensus 269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred cccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 345555555554444455555556666666666665332222 223445555555444
No 137
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.21 E-value=2e-12 Score=114.72 Aligned_cols=55 Identities=20% Similarity=0.091 Sum_probs=30.2
Q ss_pred cCCccEEEccccCCcc--CCcccccCccCCEEeccCCcCCc-cCcccccCCCCCCEEec
Q 025516 177 SGNIGQLFLSGTAIEE--LPSSFELLLRLWLLDLSDCKRLK-SLPSSLCKLKSLELLSL 232 (251)
Q Consensus 177 ~~~L~~L~l~~n~i~~--lp~~~~~l~~L~~L~l~~n~~~~-~~p~~~~~l~~L~~L~l 232 (251)
+++|++|++++|.++. ++..+..+++|+.|++++| +.. .++.....+++|++|++
T Consensus 288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L 345 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRV 345 (594)
T ss_dssp HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEE
T ss_pred hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEE
Confidence 4667777777776552 2333456666777777665 221 12222234666666666
No 138
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.20 E-value=8.9e-13 Score=117.04 Aligned_cols=33 Identities=18% Similarity=0.112 Sum_probs=16.1
Q ss_pred cCCccEEEccccCCc--cCCcccccCccCCEEecc
Q 025516 177 SGNIGQLFLSGTAIE--ELPSSFELLLRLWLLDLS 209 (251)
Q Consensus 177 ~~~L~~L~l~~n~i~--~lp~~~~~l~~L~~L~l~ 209 (251)
+++|++|++++|.++ .++..+..+++|+.|+++
T Consensus 292 ~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 292 AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp GGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred cCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 455666666666544 122223444555555554
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.18 E-value=1.2e-13 Score=116.03 Aligned_cols=159 Identities=16% Similarity=0.088 Sum_probs=90.5
Q ss_pred CCCccEEEeecccCCCCCccccccC-----CcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCcccc-----c--
Q 025516 61 MRKLRFLKFYSSSFNGENRCKVSHL-----QDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQ-----L-- 128 (251)
Q Consensus 61 l~~L~~L~l~~n~~~~~~~~~l~~l-----~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~-----l-- 128 (251)
++.|+.|++++|.++......+... ..++.++|+.|.+++..+..+. -.+.+|+.|++++|.+.. +
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~--~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLL--PVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTH--HHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHH--HHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 5788899999988775333333221 3344444444333221111110 025677888888887742 2
Q ss_pred ---cCcCCccEEEcCCCcCCcc----ccCccccCCCccEEecCCCCCCCC----CCcc--ccCCccEEEccccCCcc---
Q 025516 129 ---WNSVKLVILNLSGSKSLKS----LPAGIFNLEFLTELDLSGCSKLKR----LPEI--SSGNIGQLFLSGTAIEE--- 192 (251)
Q Consensus 129 ---~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~--~~~~L~~L~l~~n~i~~--- 192 (251)
....+|++|++++|.+... ++..+...++|++|++++|.+... ++.. ..++|++|++++|.++.
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence 2345688888888765432 333445667788888888764421 1111 14577788888877762
Q ss_pred --CCcccccCccCCEEeccCCcCCccCcccc
Q 025516 193 --LPSSFELLLRLWLLDLSDCKRLKSLPSSL 221 (251)
Q Consensus 193 --lp~~~~~l~~L~~L~l~~n~~~~~~p~~~ 221 (251)
++..+...++|+.|++++|.+...-...+
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 33445566777788887777664444433
No 140
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.12 E-value=3.5e-10 Score=93.86 Aligned_cols=97 Identities=20% Similarity=0.082 Sum_probs=54.2
Q ss_pred eecCCC-cccc---ccCcCCccEEEcCC-CcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCC
Q 025516 118 LEVPNS-DIEQ---LWNSVKLVILNLSG-SKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAI 190 (251)
Q Consensus 118 L~l~~n-~i~~---l~~~~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i 190 (251)
++.+++ ++.. ++.+.+|++|+|++ |.+.+..+..++++++|+.|++++|.+.+..|..+ +++|+.|+|++|++
T Consensus 13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 355554 4443 33444566777764 55444444556666666666666666555444432 56666666666666
Q ss_pred ccCCcccccCccCCEEeccCCcCC
Q 025516 191 EELPSSFELLLRLWLLDLSDCKRL 214 (251)
Q Consensus 191 ~~lp~~~~~l~~L~~L~l~~n~~~ 214 (251)
+.+|..+.....|+.|++.+|++.
T Consensus 93 ~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 93 ESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ceeCHHHcccCCceEEEeeCCCcc
Confidence 666554332223666666666654
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.07 E-value=2.8e-10 Score=93.89 Aligned_cols=57 Identities=19% Similarity=0.138 Sum_probs=30.4
Q ss_pred cCCccEEEccccCCccCCc-ccccCccCCEEeccCCcCCccCcccccCCCCCC-EEeccC
Q 025516 177 SGNIGQLFLSGTAIEELPS-SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLE-LLSLRG 234 (251)
Q Consensus 177 ~~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~-~L~l~~ 234 (251)
+++|+.+++++|+++.+|+ .|.++++|+.+++.+| +....+.+|.+|++|+ .+.+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc
Confidence 3455566666555555554 3455555666665554 3333334555555565 555555
No 142
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.04 E-value=8.6e-12 Score=110.70 Aligned_cols=175 Identities=18% Similarity=0.173 Sum_probs=101.6
Q ss_pred hhcCCCccEEEeecccCCCCCccccc-cCCcceecceeEE-eeccCCCCCCCCCC-CcCCceEeecCCCcccc-----cc
Q 025516 58 FAKMRKLRFLKFYSSSFNGENRCKVS-HLQDLRFAEVKYL-HWHGYPLKSLPSNH-SAEKLMFLEVPNSDIEQ-----LW 129 (251)
Q Consensus 58 ~~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~l~~l~L~~~-~l~~~~~~~~~~~~-~l~~L~~L~l~~n~i~~-----l~ 129 (251)
+..+++|+.|++++|.+++.....+. .+++|+.++++.+ .+... .++... .+++|++|++++|.+.+ +.
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~---~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~ 177 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTD---GLAAIAATCRNLKELDLRESDVDDVSGHWLS 177 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHH---HHHHHHHHCTTCCEEECTTCEEECCCGGGGG
T ss_pred HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHH---HHHHHHHhCCCCCEEeCcCCccCCcchHHHH
Confidence 34677888888888776654444443 4556666666555 23221 122222 46778888888777542 22
Q ss_pred ----CcCCccEEEcCCCc--CCc-cccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccC-----------
Q 025516 130 ----NSVKLVILNLSGSK--SLK-SLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTA----------- 189 (251)
Q Consensus 130 ----~~~~L~~L~l~~n~--~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~----------- 189 (251)
.+++|++|++++|. ... .++..+.++++|++|++++|...+.++... +++|++|+++++.
T Consensus 178 ~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l 257 (594)
T 2p1m_B 178 HFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL 257 (594)
T ss_dssp GSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHH
T ss_pred HHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHH
Confidence 45578888887764 111 111222346778888887774333333322 5666666654331
Q ss_pred --------------------CccCCcccccCccCCEEeccCCcCCccC-cccccCCCCCCEEeccCC
Q 025516 190 --------------------IEELPSSFELLLRLWLLDLSDCKRLKSL-PSSLCKLKSLELLSLRGC 235 (251)
Q Consensus 190 --------------------i~~lp~~~~~l~~L~~L~l~~n~~~~~~-p~~~~~l~~L~~L~l~~n 235 (251)
...+|..+..+++|+.|++++|.+.... +..+..+++|++|++++|
T Consensus 258 ~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 258 SVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred HHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 1124444446788888888888855332 233568888999988876
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.01 E-value=1.6e-09 Score=89.89 Aligned_cols=90 Identities=23% Similarity=0.149 Sum_probs=71.6
Q ss_pred CCCCCCCCC-CcCCceEeecCC-Ccccc-----ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCc
Q 025516 102 PLKSLPSNH-SAEKLMFLEVPN-SDIEQ-----LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPE 174 (251)
Q Consensus 102 ~~~~~~~~~-~l~~L~~L~l~~-n~i~~-----l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 174 (251)
.+..+|. + .+.+|+.|++++ |.+.. +..+.+|++|+|++|.+.+..|..|+++++|++|++++|.+.+..+.
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 98 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK 98 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHH
Confidence 5566777 5 578899999996 98864 45678999999999987777777888999999999999987655444
Q ss_pred cc-cCCccEEEccccCCcc
Q 025516 175 IS-SGNIGQLFLSGTAIEE 192 (251)
Q Consensus 175 ~~-~~~L~~L~l~~n~i~~ 192 (251)
.+ ...|+.|++.+|.+..
T Consensus 99 ~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 99 TVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp TTCSCCCCEEECCSSCCCC
T ss_pred HcccCCceEEEeeCCCccC
Confidence 43 3349999999998873
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.90 E-value=7.4e-11 Score=99.05 Aligned_cols=135 Identities=18% Similarity=0.068 Sum_probs=100.3
Q ss_pred cCCceEeecCCCcccc-----c-cCcCCccEEEcCCCcCCccccCcc-----ccCCCccEEecCCCCCCCC----CCcc-
Q 025516 112 AEKLMFLEVPNSDIEQ-----L-WNSVKLVILNLSGSKSLKSLPAGI-----FNLEFLTELDLSGCSKLKR----LPEI- 175 (251)
Q Consensus 112 l~~L~~L~l~~n~i~~-----l-~~~~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~l~~n~~~~~----~~~~- 175 (251)
..+|++|++++|.+.. + ..+.+|++|++++|.+.......+ ...++|++|++++|.+... ++..
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 3689999999999853 2 235689999999998655433333 2357899999999976431 2221
Q ss_pred -ccCCccEEEccccCCcc-----CCcccccCccCCEEeccCCcCCcc----CcccccCCCCCCEEeccCCcCCCCCChhh
Q 025516 176 -SSGNIGQLFLSGTAIEE-----LPSSFELLLRLWLLDLSDCKRLKS----LPSSLCKLKSLELLSLRGCSNLQRLPDRL 245 (251)
Q Consensus 176 -~~~~L~~L~l~~n~i~~-----lp~~~~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~~~~~~p~~l 245 (251)
..++|++|++++|.++. ++..+...++|+.|++++|.+... ++..+..+++|++|++++|.+...-...+
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 26789999999999873 456677888999999999998753 44556678999999999998765444444
Q ss_pred h
Q 025516 246 A 246 (251)
Q Consensus 246 ~ 246 (251)
+
T Consensus 260 ~ 260 (372)
T 3un9_A 260 R 260 (372)
T ss_dssp H
T ss_pred H
Confidence 3
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.89 E-value=1.6e-08 Score=85.65 Aligned_cols=173 Identities=10% Similarity=0.094 Sum_probs=109.0
Q ss_pred chhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCC--CcCCceEeecCCCcccccc---
Q 025516 55 PNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH--SAEKLMFLEVPNSDIEQLW--- 129 (251)
Q Consensus 55 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~--~l~~L~~L~l~~n~i~~l~--- 129 (251)
..+|.++.+|+.+++..|.+......+|. ..+++ ...+.+ .+..++... ++.+|+.++++.+ +..++
T Consensus 173 ~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~-----~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~a 244 (401)
T 4fdw_A 173 EDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIE-----EVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEA 244 (401)
T ss_dssp SSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCS-----EEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTT
T ss_pred HHHhhCcccCCeeecCCCcceEechhhEe-ecccC-----EEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCccccc
Confidence 56777777777777777766655444554 23333 333332 233444322 5778888888764 33222
Q ss_pred -CcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCC----CCCCc-cc--cCCccEEEccccCCccCCc-ccccC
Q 025516 130 -NSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKL----KRLPE-IS--SGNIGQLFLSGTAIEELPS-SFELL 200 (251)
Q Consensus 130 -~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~----~~~~~-~~--~~~L~~L~l~~n~i~~lp~-~~~~l 200 (251)
...+|+.+.+.. .........|.++++|+.+++.++... ..++. .+ +++|+.+.+. +.++.++. .|.++
T Consensus 245 F~~~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c 322 (401)
T 4fdw_A 245 FRESGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGN 322 (401)
T ss_dssp TTTCCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTC
T ss_pred cccCCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCC
Confidence 125688888854 333334566778889999988877543 12332 22 7788888888 45777765 56788
Q ss_pred ccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCC
Q 025516 201 LRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQ 239 (251)
Q Consensus 201 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~ 239 (251)
++|+.+.+..+ +...-+.+|.++ +|+.+.+.+|....
T Consensus 323 ~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 323 RKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp CSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred CCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence 89999998654 444445678888 89999998875543
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.73 E-value=7.1e-09 Score=86.54 Aligned_cols=15 Identities=13% Similarity=-0.049 Sum_probs=9.8
Q ss_pred hhcCCCccEEEeecc
Q 025516 58 FAKMRKLRFLKFYSS 72 (251)
Q Consensus 58 ~~~l~~L~~L~l~~n 72 (251)
...+++|+.|.+.+.
T Consensus 135 ~~~l~~L~~L~l~~~ 149 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDI 149 (362)
T ss_dssp HHHHTTCSEEEECCC
T ss_pred hhhcchhhheeecCc
Confidence 445677777777554
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.64 E-value=9.3e-09 Score=85.83 Aligned_cols=129 Identities=16% Similarity=0.094 Sum_probs=87.6
Q ss_pred CcCCceEeecCCCcccccc--CcCCccEEEcCCCcCCccccCccc--cCCCccEEecCC--CCCCCC-----CC----cc
Q 025516 111 SAEKLMFLEVPNSDIEQLW--NSVKLVILNLSGSKSLKSLPAGIF--NLEFLTELDLSG--CSKLKR-----LP----EI 175 (251)
Q Consensus 111 ~l~~L~~L~l~~n~i~~l~--~~~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~l~~--n~~~~~-----~~----~~ 175 (251)
.+++|+.|.+.++.-..++ ..++|+.|++..|.+.......+. .+++|++|+++. +...+. +. ..
T Consensus 170 ~~P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~ 249 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKD 249 (362)
T ss_dssp TCTTCCEEEEECCBTCBCCSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTT
T ss_pred cCCCCcEEEEeCCCCceeccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcC
Confidence 4688999999877311222 367899999988875544333343 689999999853 111111 11 12
Q ss_pred ccCCccEEEccccCCcc-CCccc---ccCccCCEEeccCCcCCcc----CcccccCCCCCCEEeccCCcCCC
Q 025516 176 SSGNIGQLFLSGTAIEE-LPSSF---ELLLRLWLLDLSDCKRLKS----LPSSLCKLKSLELLSLRGCSNLQ 239 (251)
Q Consensus 176 ~~~~L~~L~l~~n~i~~-lp~~~---~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~~~~ 239 (251)
.+++|+.|++.+|.+.. .+..+ ..+++|+.|+|+.|.+... ++..+..+++|+.|++++|.+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 27899999999998872 22222 3688999999999987654 34445678999999999986543
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.61 E-value=6.7e-07 Score=75.66 Aligned_cols=169 Identities=8% Similarity=0.081 Sum_probs=85.6
Q ss_pred chhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCC-C-CcCCceEeecCCCccccccC--
Q 025516 55 PNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSN-H-SAEKLMFLEVPNSDIEQLWN-- 130 (251)
Q Consensus 55 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~-~-~l~~L~~L~l~~n~i~~l~~-- 130 (251)
..+|.++ +|+.+.+..+ +......+|... .| ....+.+ .+..++.. + ++.+|+.+++++|++..++.
T Consensus 129 ~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L-----~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~a 199 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TV-----QEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPAST 199 (401)
T ss_dssp TTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CC-----CEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTT
T ss_pred HhhcccC-CccEEEeCCC-ccEECHHhcCCC-Cc-----eEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhh
Confidence 4566664 6777777654 443334444432 22 2222222 23333332 2 46667777776666654332
Q ss_pred --cCCccEEEcCCCcCCccccCccccCCCccEEecCCCC--------------------CCCCCCc-cc--cCCccEEEc
Q 025516 131 --SVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCS--------------------KLKRLPE-IS--SGNIGQLFL 185 (251)
Q Consensus 131 --~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~--------------------~~~~~~~-~~--~~~L~~L~l 185 (251)
..+|+.+.+..+ ........|.++++|+.+++..+- ....++. .+ +++|+.+.+
T Consensus 200 F~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l 278 (401)
T 4fdw_A 200 FVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTT 278 (401)
T ss_dssp TTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEE
T ss_pred EeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEe
Confidence 345666666532 222223344455555655554431 0122221 11 556777777
Q ss_pred cccCCc-----cCCc-ccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccC
Q 025516 186 SGTAIE-----ELPS-SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRG 234 (251)
Q Consensus 186 ~~n~i~-----~lp~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 234 (251)
.++.+. .++. .|.++++|+.+.+.+ .+...-..+|.+|++|+.+.+..
T Consensus 279 ~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 279 YGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp ESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT
T ss_pred CCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc
Confidence 666554 3443 456677777777763 33333345667777777777754
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.54 E-value=2.3e-08 Score=75.46 Aligned_cols=110 Identities=14% Similarity=0.099 Sum_probs=68.4
Q ss_pred ccCcCCccEEEcCCC-cCCcc----ccCccccCCCccEEecCCCCCCCC----CCccc--cCCccEEEccccCCcc----
Q 025516 128 LWNSVKLVILNLSGS-KSLKS----LPAGIFNLEFLTELDLSGCSKLKR----LPEIS--SGNIGQLFLSGTAIEE---- 192 (251)
Q Consensus 128 l~~~~~L~~L~l~~n-~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~--~~~L~~L~l~~n~i~~---- 192 (251)
+...++|++|+|++| .+... +...+...++|++|++++|.+... +.... .++|++|++++|.|+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 344556667777666 43322 223344456677777777754321 11111 4567788888887772
Q ss_pred -CCcccccCccCCEEec--cCCcCCcc----CcccccCCCCCCEEeccCCcC
Q 025516 193 -LPSSFELLLRLWLLDL--SDCKRLKS----LPSSLCKLKSLELLSLRGCSN 237 (251)
Q Consensus 193 -lp~~~~~l~~L~~L~l--~~n~~~~~----~p~~~~~l~~L~~L~l~~n~~ 237 (251)
+...+...+.|+.|++ ++|.+... +...+...++|++|++++|.+
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 4556777788888888 77887643 334556678888898888754
No 150
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.43 E-value=5.6e-08 Score=77.44 Aligned_cols=77 Identities=21% Similarity=0.203 Sum_probs=42.8
Q ss_pred cCCCccEEecCCCCCCC--CCCccc--cCCccEEEccccCCccCCcccccCc--cCCEEeccCCcCCccCc-------cc
Q 025516 154 NLEFLTELDLSGCSKLK--RLPEIS--SGNIGQLFLSGTAIEELPSSFELLL--RLWLLDLSDCKRLKSLP-------SS 220 (251)
Q Consensus 154 ~l~~L~~L~l~~n~~~~--~~~~~~--~~~L~~L~l~~n~i~~lp~~~~~l~--~L~~L~l~~n~~~~~~p-------~~ 220 (251)
++++|++|++++|.+.+ .++... +++|+.|+|++|.++.+. .+..++ +|+.|++++|++.+.+| ..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 34555555555555444 222221 556666666666666542 233333 67777777777665554 23
Q ss_pred ccCCCCCCEEe
Q 025516 221 LCKLKSLELLS 231 (251)
Q Consensus 221 ~~~l~~L~~L~ 231 (251)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 56677777765
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.36 E-value=2.1e-07 Score=69.21 Aligned_cols=81 Identities=12% Similarity=0.094 Sum_probs=44.2
Q ss_pred CCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc-------cCCccEEEccccC-Ccc-CCcccccCcc
Q 025516 132 VKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-------SGNIGQLFLSGTA-IEE-LPSSFELLLR 202 (251)
Q Consensus 132 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-------~~~L~~L~l~~n~-i~~-lp~~~~~l~~ 202 (251)
..|+.||+++|.+....-..+.++++|++|++++|...++..-.. .++|++|++++|. |++ --..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 357788888777554444456677777777777776544322110 1245555555553 441 0112344556
Q ss_pred CCEEeccCCc
Q 025516 203 LWLLDLSDCK 212 (251)
Q Consensus 203 L~~L~l~~n~ 212 (251)
|+.|++++|+
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 6666666655
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.30 E-value=2.1e-07 Score=70.14 Aligned_cols=104 Identities=13% Similarity=0.095 Sum_probs=75.7
Q ss_pred CcCCceEeecCCC-ccc---------cccCcCCccEEEcCCCcCCcc----ccCccccCCCccEEecCCCCCCCC----C
Q 025516 111 SAEKLMFLEVPNS-DIE---------QLWNSVKLVILNLSGSKSLKS----LPAGIFNLEFLTELDLSGCSKLKR----L 172 (251)
Q Consensus 111 ~l~~L~~L~l~~n-~i~---------~l~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~ 172 (251)
..++|++|++++| .+. .+...++|++|+|++|.+... +...+...++|++|++++|.+... +
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 3577888888888 774 245567899999999885543 234444567899999999976532 1
Q ss_pred Cccc--cCCccEEEc--cccCCcc-----CCcccccCccCCEEeccCCcCC
Q 025516 173 PEIS--SGNIGQLFL--SGTAIEE-----LPSSFELLLRLWLLDLSDCKRL 214 (251)
Q Consensus 173 ~~~~--~~~L~~L~l--~~n~i~~-----lp~~~~~l~~L~~L~l~~n~~~ 214 (251)
.... .+.|++|++ ++|.++. +...+...+.|+.|++++|.+.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2211 568999999 8899872 5556677789999999999864
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.19 E-value=1.7e-06 Score=68.84 Aligned_cols=95 Identities=21% Similarity=0.214 Sum_probs=69.5
Q ss_pred CCceE--eecCCCccccc--------cCcCCccEEEcCCCcCCc--cccCccccCCCccEEecCCCCCCCCCCccccC--
Q 025516 113 EKLMF--LEVPNSDIEQL--------WNSVKLVILNLSGSKSLK--SLPAGIFNLEFLTELDLSGCSKLKRLPEISSG-- 178 (251)
Q Consensus 113 ~~L~~--L~l~~n~i~~l--------~~~~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-- 178 (251)
+.|.. ++++.|..+.+ ..+++|+.|+|++|.+.+ .+|..++.+++|+.|++++|.+.+.-.-..+.
T Consensus 141 p~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l 220 (267)
T 3rw6_A 141 PDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL 220 (267)
T ss_dssp HHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS
T ss_pred cchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC
Confidence 34444 56777755422 246789999999998776 45666778999999999999877641111133
Q ss_pred CccEEEccccCCc-cCCc-------ccccCccCCEEe
Q 025516 179 NIGQLFLSGTAIE-ELPS-------SFELLLRLWLLD 207 (251)
Q Consensus 179 ~L~~L~l~~n~i~-~lp~-------~~~~l~~L~~L~ 207 (251)
+|++|++++|.+. .+|. .+..+|+|+.||
T Consensus 221 ~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 221 KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 8999999999987 4552 367899999997
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.81 E-value=3.9e-06 Score=62.29 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=18.8
Q ss_pred CccEEEcCCCc-CCccccCccccCCCccEEecCCCCCCC
Q 025516 133 KLVILNLSGSK-SLKSLPAGIFNLEFLTELDLSGCSKLK 170 (251)
Q Consensus 133 ~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n~~~~ 170 (251)
+|++|++++|. ++...-..+..+++|++|++++|...+
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 46666666654 222222334455556666666654333
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.34 E-value=0.0023 Score=53.63 Aligned_cols=80 Identities=19% Similarity=0.109 Sum_probs=50.9
Q ss_pred cccCCCccEEecCCCCCCCCCCcc-c--cCCccEEEccccCCccCCc-ccccCccCCEEeccCCcCCccCcccccCCCCC
Q 025516 152 IFNLEFLTELDLSGCSKLKRLPEI-S--SGNIGQLFLSGTAIEELPS-SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSL 227 (251)
Q Consensus 152 ~~~l~~L~~L~l~~n~~~~~~~~~-~--~~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 227 (251)
+.++.+|+.+.+..+ .+.++.. + +.+|+.+++.. .++.+.. +|.++.+|+.+.+..+ +...-..+|.+|++|
T Consensus 293 F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred ccccccccccccccc--cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 334566666666543 2333332 2 56788888754 3666654 5677888888888654 344445678888888
Q ss_pred CEEeccCC
Q 025516 228 ELLSLRGC 235 (251)
Q Consensus 228 ~~L~l~~n 235 (251)
+.+.+..+
T Consensus 369 ~~i~lp~~ 376 (394)
T 4fs7_A 369 KKVELPKR 376 (394)
T ss_dssp CEEEEEGG
T ss_pred CEEEECCC
Confidence 88887653
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.32 E-value=0.00064 Score=47.79 Aligned_cols=55 Identities=20% Similarity=0.228 Sum_probs=40.5
Q ss_pred EEecCCCCCC-CCCCccccCCccEEEccccCCccCCcc-cccCccCCEEeccCCcCC
Q 025516 160 ELDLSGCSKL-KRLPEISSGNIGQLFLSGTAIEELPSS-FELLLRLWLLDLSDCKRL 214 (251)
Q Consensus 160 ~L~l~~n~~~-~~~~~~~~~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~ 214 (251)
.++.+++.+. ..+|.....+|++|+|++|+|+.+|.. +..+++|+.|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666543 267766667888888888888888764 567888888888888753
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.32 E-value=0.007 Score=50.64 Aligned_cols=21 Identities=14% Similarity=0.300 Sum_probs=16.2
Q ss_pred CCchhhhcCCCccEEEeeccc
Q 025516 53 LNPNTFAKMRKLRFLKFYSSS 73 (251)
Q Consensus 53 ~~~~~~~~l~~L~~L~l~~n~ 73 (251)
+...+|.++.+|+.+.+..+.
T Consensus 78 Ig~~AF~~C~~L~~i~~~~n~ 98 (394)
T 4gt6_A 78 IGSNAFYNCTSLKRVTIQDNK 98 (394)
T ss_dssp ECTTTTTTCTTCCEEEEGGGC
T ss_pred EhHHHhhCCccCceEeecCCC
Confidence 336788899999999887653
No 158
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.27 E-value=0.0006 Score=47.95 Aligned_cols=56 Identities=18% Similarity=0.100 Sum_probs=47.2
Q ss_pred cEEEccccCCc--cCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCC
Q 025516 181 GQLFLSGTAIE--ELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNL 238 (251)
Q Consensus 181 ~~L~l~~n~i~--~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~ 238 (251)
..++.+++.++ .+|..+. ++|+.|+|++|++...-+..+..+++|++|++++|+..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47888999998 8997653 57999999999987766678899999999999998764
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.09 E-value=0.00029 Score=53.19 Aligned_cols=105 Identities=13% Similarity=0.093 Sum_probs=56.6
Q ss_pred cCCccEEEcCCC-cCCc----cccCccccCCCccEEecCCCCCCCCCC----ccc--cCCccEEEccccCCc-----cCC
Q 025516 131 SVKLVILNLSGS-KSLK----SLPAGIFNLEFLTELDLSGCSKLKRLP----EIS--SGNIGQLFLSGTAIE-----ELP 194 (251)
Q Consensus 131 ~~~L~~L~l~~n-~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~----~~~--~~~L~~L~l~~n~i~-----~lp 194 (251)
-..|+.|+|++| .+.. .+...+..-+.|+.|++++|.+...-. ... -+.|++|+|++|.|+ .+.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 345666666653 3221 122333334456666666665432111 111 356777777777776 244
Q ss_pred cccccCccCCEEeccCCc---CCc----cCcccccCCCCCCEEeccCC
Q 025516 195 SSFELLLRLWLLDLSDCK---RLK----SLPSSLCKLKSLELLSLRGC 235 (251)
Q Consensus 195 ~~~~~l~~L~~L~l~~n~---~~~----~~p~~~~~l~~L~~L~l~~n 235 (251)
+.+..-+.|+.|+|++|. +.. .+...+..-+.|+.|+++.|
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 455555668888887543 221 23345566677888888764
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.99 E-value=0.0039 Score=52.19 Aligned_cols=158 Identities=9% Similarity=0.074 Sum_probs=97.3
Q ss_pred cCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCC-CC-CcCCceEeecCCCccc--cccCcCCcc
Q 025516 60 KMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPS-NH-SAEKLMFLEVPNSDIE--QLWNSVKLV 135 (251)
Q Consensus 60 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~-~~-~l~~L~~L~l~~n~i~--~l~~~~~L~ 135 (251)
...+|+.+.+... .......++..+..++...+. .+ ...++. .+ ....++.+....+.+. .+....+|+
T Consensus 228 ~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~-----~~-~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~ 300 (394)
T 4fs7_A 228 SKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQ-----NN-KLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLT 300 (394)
T ss_dssp TTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEEC-----CT-TCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCC
T ss_pred ccCCCceEEECCC-ceecccccccccccceeEEcC-----CC-cceeeccccccccccceeccCceeecccccccccccc
Confidence 4567787777543 222223344444444433332 21 111211 11 4566666666665554 355677888
Q ss_pred EEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCcc-c--cCCccEEEccccCCccCCc-ccccCccCCEEeccCC
Q 025516 136 ILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEI-S--SGNIGQLFLSGTAIEELPS-SFELLLRLWLLDLSDC 211 (251)
Q Consensus 136 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~--~~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n 211 (251)
.+.+..+ ........+.++.+|+.+++..+ .+.++.. + +.+|+.+.+..+ ++.++. +|.++++|+.+++..+
T Consensus 301 ~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 301 EVKLLDS-VKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp EEEECTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred ccccccc-cceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 8888754 23333455778899999999754 3444432 2 688999999766 776765 6789999999999754
Q ss_pred cCCccCcccccCCCCCCEE
Q 025516 212 KRLKSLPSSLCKLKSLELL 230 (251)
Q Consensus 212 ~~~~~~p~~~~~l~~L~~L 230 (251)
...+..++.++++|+.+
T Consensus 377 --~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 377 --LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp --GGGGGGGBCTTCEEEEE
T ss_pred --CEEhhheecCCCCCcEE
Confidence 23445678889888875
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.92 E-value=0.0096 Score=49.81 Aligned_cols=116 Identities=12% Similarity=0.176 Sum_probs=51.9
Q ss_pred cCCceEeecCCCccc----cccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCcc-c--cCCccEEE
Q 025516 112 AEKLMFLEVPNSDIE----QLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEI-S--SGNIGQLF 184 (251)
Q Consensus 112 l~~L~~L~l~~n~i~----~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~--~~~L~~L~ 184 (251)
+..|+.+.++.+... .+.++..|+.+.+.. .........|.++.+|+.+++..+ .+.++.. + +.+|+++.
T Consensus 264 c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ 340 (394)
T 4gt6_A 264 CAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIA 340 (394)
T ss_dssp CSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEE
T ss_pred cccccEEecccccceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEE
Confidence 455555555443221 233445566666543 212222233445666666666543 2223221 1 45666666
Q ss_pred ccccCCccCCc-ccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccC
Q 025516 185 LSGTAIEELPS-SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRG 234 (251)
Q Consensus 185 l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 234 (251)
+.. .++.+.. +|.++++|+.+++.++.... ..+..+.+|+.+.+..
T Consensus 341 ip~-sv~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 341 IPS-SVTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAP 387 (394)
T ss_dssp ECT-TCCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-------
T ss_pred ECc-ccCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCC
Confidence 643 2445543 45566666666665543211 2345555666655544
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.66 E-value=0.078 Score=43.84 Aligned_cols=57 Identities=19% Similarity=0.208 Sum_probs=36.6
Q ss_pred cCCccEEEccccCCccCCc-ccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccC
Q 025516 177 SGNIGQLFLSGTAIEELPS-SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRG 234 (251)
Q Consensus 177 ~~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 234 (251)
+.+|+.+.+..+.++.+++ .|.++.+|+.+.+..+ +...-..+|.+|++|+.+.+..
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred ccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 5667777777777766654 4567777777777543 2333345677777777776643
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.65 E-value=0.0011 Score=50.01 Aligned_cols=82 Identities=20% Similarity=0.150 Sum_probs=60.6
Q ss_pred cCCCccEEecCCCCCCCCCC-----cc--ccCCccEEEccccCCc-----cCCcccccCccCCEEeccCCcCCcc----C
Q 025516 154 NLEFLTELDLSGCSKLKRLP-----EI--SSGNIGQLFLSGTAIE-----ELPSSFELLLRLWLLDLSDCKRLKS----L 217 (251)
Q Consensus 154 ~l~~L~~L~l~~n~~~~~~~-----~~--~~~~L~~L~l~~n~i~-----~lp~~~~~l~~L~~L~l~~n~~~~~----~ 217 (251)
+-+.|++|++++|..+++.. +. .-+.|+.|+|++|+|. .+.+.+..-+.|+.|+|++|.+... +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 45689999999863333211 11 1468999999999998 3556677778999999999998743 3
Q ss_pred cccccCCCCCCEEeccCC
Q 025516 218 PSSLCKLKSLELLSLRGC 235 (251)
Q Consensus 218 p~~~~~l~~L~~L~l~~n 235 (251)
..++..-+.|+.|++++|
T Consensus 119 a~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTTTCCCSEEECCCC
T ss_pred HHHHhhCCceeEEECCCC
Confidence 345666778999999875
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.28 E-value=0.033 Score=46.12 Aligned_cols=56 Identities=11% Similarity=0.054 Sum_probs=26.4
Q ss_pred cCCccEEEccccCCccCCc-ccccCccCCEEeccCCcCCccCcccccCCCCCCEEecc
Q 025516 177 SGNIGQLFLSGTAIEELPS-SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLR 233 (251)
Q Consensus 177 ~~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~ 233 (251)
+..|+.+.+.. .+..++. .+.++++|+.+.+.++.+...-..+|.+|.+|+.+.+.
T Consensus 262 ~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 262 CTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp CTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred eehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 34455555432 2333332 34455555555555444333333455555555555554
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=52.28 E-value=20 Score=23.23 Aligned_cols=37 Identities=16% Similarity=0.054 Sum_probs=17.5
Q ss_pred cccCccCCEEeccCCcCCccCcccccCCCCCCEEeccC
Q 025516 197 FELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRG 234 (251)
Q Consensus 197 ~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 234 (251)
|.++.+|+.+.|-. .+...-..+|.+|.+|+.+.+..
T Consensus 16 F~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcC
Confidence 44555555555543 22222234455555555555543
No 166
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=26.49 E-value=18 Score=31.41 Aligned_cols=17 Identities=12% Similarity=0.395 Sum_probs=15.0
Q ss_pred CchhHhHHHHHHHHhhh
Q 025516 2 EALEYHDALELFSRHAF 18 (251)
Q Consensus 2 ~~~~~hd~~~~~~~~~~ 18 (251)
..|+|||+++++++.++
T Consensus 452 ~~~~mHdlv~~~a~~~~ 468 (549)
T 2a5y_B 452 LTFKIDHIIHMFLKHVV 468 (549)
T ss_dssp CEEECCHHHHHHHHTTS
T ss_pred eEEEeChHHHHHHHHHH
Confidence 35899999999999876
Done!