BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025517
(251 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P30352|SRSF2_CHICK Serine/arginine-rich splicing factor 2 OS=Gallus gallus GN=SRSF2
PE=2 SV=1
Length = 221
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 65/87 (74%)
Query: 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYAD 68
PPD+ SL V N+T+RT+ D L +FEKYG+V DV+IPRDR T +SRGFAFVR+
Sbjct: 7 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 66
Query: 69 EAQKAVDRLDGRVVDGREITVQFAKYG 95
+A+ A+D +DG V+DGRE+ VQ A+YG
Sbjct: 67 DAEDAMDAMDGAVLDGRELRVQMARYG 93
>sp|Q5R1W5|SRSF2_PANTR Serine/arginine-rich splicing factor 2 OS=Pan troglodytes
GN=SRSF2 PE=2 SV=3
Length = 221
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 65/87 (74%)
Query: 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYAD 68
PPD+ SL V N+T+RT+ D L +FEKYG+V DV+IPRDR T +SRGFAFVR+
Sbjct: 7 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 66
Query: 69 EAQKAVDRLDGRVVDGREITVQFAKYG 95
+A+ A+D +DG V+DGRE+ VQ A+YG
Sbjct: 67 DAEDAMDAMDGAVLDGRELRVQMARYG 93
>sp|Q06A98|SRSF2_PIG Serine/arginine-rich splicing factor 2 OS=Sus scrofa GN=SRSF2
PE=2 SV=1
Length = 221
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 65/87 (74%)
Query: 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYAD 68
PPD+ SL V N+T+RT+ D L +FEKYG+V DV+IPRDR T +SRGFAFVR+
Sbjct: 7 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 66
Query: 69 EAQKAVDRLDGRVVDGREITVQFAKYG 95
+A+ A+D +DG V+DGRE+ VQ A+YG
Sbjct: 67 DAEDAMDAMDGAVLDGRELRVQMARYG 93
>sp|Q6PDU1|SRSF2_RAT Serine/arginine-rich splicing factor 2 OS=Rattus norvegicus
GN=Srsf2 PE=1 SV=3
Length = 221
Score = 99.0 bits (245), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 65/87 (74%)
Query: 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYAD 68
PPD+ SL V N+T+RT+ D L +FEKYG+V DV+IPRDR T +SRGFAFVR+
Sbjct: 7 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 66
Query: 69 EAQKAVDRLDGRVVDGREITVQFAKYG 95
+A+ A+D +DG V+DGRE+ VQ A+YG
Sbjct: 67 DAEDAMDAMDGAVLDGRELRVQMARYG 93
>sp|Q62093|SRSF2_MOUSE Serine/arginine-rich splicing factor 2 OS=Mus musculus GN=Srsf2
PE=1 SV=4
Length = 221
Score = 99.0 bits (245), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 65/87 (74%)
Query: 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYAD 68
PPD+ SL V N+T+RT+ D L +FEKYG+V DV+IPRDR T +SRGFAFVR+
Sbjct: 7 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 66
Query: 69 EAQKAVDRLDGRVVDGREITVQFAKYG 95
+A+ A+D +DG V+DGRE+ VQ A+YG
Sbjct: 67 DAEDAMDAMDGAVLDGRELRVQMARYG 93
>sp|Q01130|SRSF2_HUMAN Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2
PE=1 SV=4
Length = 221
Score = 99.0 bits (245), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 65/87 (74%)
Query: 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYAD 68
PPD+ SL V N+T+RT+ D L +FEKYG+V DV+IPRDR T +SRGFAFVR+
Sbjct: 7 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 66
Query: 69 EAQKAVDRLDGRVVDGREITVQFAKYG 95
+A+ A+D +DG V+DGRE+ VQ A+YG
Sbjct: 67 DAEDAMDAMDGAVLDGRELRVQMARYG 93
>sp|Q3MHR5|SRSF2_BOVIN Serine/arginine-rich splicing factor 2 OS=Bos taurus GN=SRSF2
PE=2 SV=3
Length = 221
Score = 99.0 bits (245), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 65/87 (74%)
Query: 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYAD 68
PPD+ SL V N+T+RT+ D L +FEKYG+V DV+IPRDR T +SRGFAFVR+
Sbjct: 7 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR 66
Query: 69 EAQKAVDRLDGRVVDGREITVQFAKYG 95
+A+ A+D +DG V+DGRE+ VQ A+YG
Sbjct: 67 DAEDAMDAMDGAVLDGRELRVQMARYG 93
>sp|Q9BRL6|SRSF8_HUMAN Serine/arginine-rich splicing factor 8 OS=Homo sapiens GN=SRSF8
PE=1 SV=1
Length = 282
Score = 87.8 bits (216), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 59/87 (67%)
Query: 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYAD 68
PPD+ +L V N+T+RT+ D L +FEKYG+V DV+IPR+ T RGFAFVR+
Sbjct: 7 PPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRR 66
Query: 69 EAQKAVDRLDGRVVDGREITVQFAKYG 95
+AQ A +DG +DGRE+ VQ A+YG
Sbjct: 67 DAQDAEAAMDGAELDGRELRVQVARYG 93
>sp|Q09511|RSP4_CAEEL Probable splicing factor, arginine/serine-rich 4
OS=Caenorhabditis elegans GN=rsp-4 PE=3 SV=1
Length = 196
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 59/85 (69%)
Query: 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADE 69
PDI SL + N++++TT +DL FE+YG + DV IPRD+ + S+GF FVR+ +
Sbjct: 13 PDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRD 72
Query: 70 AQKAVDRLDGRVVDGREITVQFAKY 94
A+ A+DR DG++VDGRE+ V AKY
Sbjct: 73 AEHALDRTDGKLVDGRELRVTLAKY 97
>sp|Q9SEU4|SR33_ARATH Serine/arginine-rich splicing factor 33 OS=Arabidopsis thaliana
GN=SR33 PE=1 SV=1
Length = 287
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 49/77 (63%)
Query: 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76
SLLV N+ +DL FE++G V D+++PRD TGD RGF FV++ +A A
Sbjct: 37 SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHH 96
Query: 77 LDGRVVDGREITVQFAK 93
+DG ++ GRE+TV FA+
Sbjct: 97 MDGYLLLGRELTVVFAE 113
>sp|Q9R0U0|SRS10_MOUSE Serine/arginine-rich splicing factor 10 OS=Mus musculus GN=Srsf10
PE=1 SV=2
Length = 262
Score = 70.9 bits (172), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 61/102 (59%), Gaps = 7/102 (6%)
Query: 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYAD 68
PP+ SL V N+ T ++DL F +YG +VDV++P D T RGFA+V+++
Sbjct: 7 PPNT----SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVR 62
Query: 69 EAQKAVDRLDGRVVDGREITVQFAK---YGPNAEKIQQGRIV 107
+A+ A+ LD + + GR+I +QFA+ PN K ++GR V
Sbjct: 63 DAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV 104
>sp|O75494|SRS10_HUMAN Serine/arginine-rich splicing factor 10 OS=Homo sapiens GN=SRSF10
PE=1 SV=1
Length = 262
Score = 70.9 bits (172), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 61/102 (59%), Gaps = 7/102 (6%)
Query: 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYAD 68
PP+ SL V N+ T ++DL F +YG +VDV++P D T RGFA+V+++
Sbjct: 7 PPNT----SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVR 62
Query: 69 EAQKAVDRLDGRVVDGREITVQFAK---YGPNAEKIQQGRIV 107
+A+ A+ LD + + GR+I +QFA+ PN K ++GR V
Sbjct: 63 DAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNV 104
>sp|Q9SD61|C3H42_ARATH Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis
thaliana GN=At3g47120 PE=2 SV=1
Length = 352
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 44/72 (61%)
Query: 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
+ V I F T DL +F +YG++VDV + RD+ TG S+GFAF+ Y+ AVD L
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 78 DGRVVDGREITV 89
+G +V GR I V
Sbjct: 98 NGALVLGRTIKV 109
>sp|P62997|TRA2B_RAT Transformer-2 protein homolog beta OS=Rattus norvegicus GN=Tra2b
PE=1 SV=1
Length = 288
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 3 HFGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFV 62
H G PD L V ++ TT DL +F KYG + DV I D+++ SRGFAFV
Sbjct: 107 HVGNRANPD--PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFV 164
Query: 63 RYKYADEAQKAVDRLDGRVVDGREITVQFA 92
++ D+A++A +R +G +DGR I V F+
Sbjct: 165 YFENVDDAKEAKERANGMELDGRRIRVDFS 194
>sp|P62996|TRA2B_MOUSE Transformer-2 protein homolog beta OS=Mus musculus GN=Tra2b PE=1
SV=1
Length = 288
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 3 HFGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFV 62
H G PD L V ++ TT DL +F KYG + DV I D+++ SRGFAFV
Sbjct: 107 HVGNRANPD--PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFV 164
Query: 63 RYKYADEAQKAVDRLDGRVVDGREITVQFA 92
++ D+A++A +R +G +DGR I V F+
Sbjct: 165 YFENVDDAKEAKERANGMELDGRRIRVDFS 194
>sp|P62995|TRA2B_HUMAN Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1
SV=1
Length = 288
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 3 HFGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFV 62
H G PD L V ++ TT DL +F KYG + DV I D+++ SRGFAFV
Sbjct: 107 HVGNRANPD--PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFV 164
Query: 63 RYKYADEAQKAVDRLDGRVVDGREITVQFA 92
++ D+A++A +R +G +DGR I V F+
Sbjct: 165 YFENVDDAKEAKERANGMELDGRRIRVDFS 194
>sp|Q3ZBT6|TRA2B_BOVIN Transformer-2 protein homolog beta OS=Bos taurus GN=TRA2B PE=2 SV=1
Length = 288
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 3 HFGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFV 62
H G PD L V ++ TT DL +F KYG + DV I D+++ SRGFAFV
Sbjct: 107 HVGNRANPD--PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFV 164
Query: 63 RYKYADEAQKAVDRLDGRVVDGREITVQFA 92
++ D+A++A +R +G +DGR I V F+
Sbjct: 165 YFENVDDAKEAKERANGMELDGRRIRVDFS 194
>sp|Q10B98|C3H25_ORYSJ Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa
subsp. japonica GN=Os03g0826400 PE=2 SV=1
Length = 312
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 91/192 (47%), Gaps = 13/192 (6%)
Query: 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQ 71
+D+ + V I + T DL +F +YG+VVDV + RD+ TG S+GFAF+ Y+
Sbjct: 32 FKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTI 91
Query: 72 KAVDRLDGRVVDGREITVQFA--------KYGPNAEKIQQGRIVESSSKSKGRSRSRSPR 123
AVD L+G V GR + V + +K ++ R V + KG +R
Sbjct: 92 LAVDNLNGAKVLGRIVRVDHVSKYKKKEEEDEEELQKKREARGV-CYAFQKGEC-NRGAS 149
Query: 124 PRY-RDEHRDKDYRRRSRSRSRERYDRDRYRSKERDHRR--RSRSRSASPDRHKNHGRGK 180
RY DE R+ + S+ S+ R++ DR+ H++ S PDR K +
Sbjct: 150 CRYSHDEQRNANTGWGSKEESKARWEHDRHHEPPMSHKKFPSSAGEQRFPDRAKEENKST 209
Query: 181 YDEERRSRSRSY 192
E + SRS +Y
Sbjct: 210 GREGQSSRSEAY 221
>sp|Q6CQR6|MRD1_KLULA Multiple RNA-binding domain-containing protein 1 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=MRD1 PE=3 SV=1
Length = 878
Score = 64.7 bits (156), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 46/78 (58%)
Query: 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQ 71
IR+T L + NI + T DD LF YG++ +V I D RTG S+GFA+V +K AD A
Sbjct: 326 IRETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAA 385
Query: 72 KAVDRLDGRVVDGREITV 89
A LD ++ GR + +
Sbjct: 386 TAFVELDKQIFQGRLLHI 403
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Query: 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
++V N+ F T D+F LF +G++ V +P+ + +RGFAFV + EA+ A+D+L
Sbjct: 754 IIVKNLPFEATRKDVFELFSSFGQLKSVRVPK-KFDKSARGFAFVEFLLPKEAENAMDQL 812
Query: 78 DGRVVDGREITVQFAKYGPNAEKIQQ 103
G + GR + ++F + P E ++Q
Sbjct: 813 QGVHLLGRRLVMEFVEQDP--EDVEQ 836
Score = 38.5 bits (88), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 6 KSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFI-----PRDRRTGDSRGFA 60
++GP T S+ + N+ F TT+ L F+ + V + P+ S GF
Sbjct: 646 QAGP-----TVSIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFG 700
Query: 61 FVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92
F +K ++A + ++G ++DG ++ ++ +
Sbjct: 701 FAEFKTKEQANAVISAMEGTILDGHKLQLKLS 732
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 52 RTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93
R G+SR FAF+ ++ ++A V+ +G VD +I V AK
Sbjct: 48 RDGESRRFAFIGFRDEEDAFDCVNYFNGTFVDTSKIEVSMAK 89
>sp|Q8WXF0|SRS12_HUMAN Serine/arginine-rich splicing factor 12 OS=Homo sapiens GN=SRSF12
PE=2 SV=1
Length = 261
Score = 64.3 bits (155), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Query: 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYAD 68
PP+ SL + N+ T +DL F +YG +VDV+IP D T RGFA+V+++
Sbjct: 7 PPNT----SLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVR 62
Query: 69 EAQKAVDRLDGRVVDGREITVQFAK 93
+A+ A+ L+ + V GR+I +QFA+
Sbjct: 63 DAEDALYNLNRKWVCGRQIEIQFAQ 87
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 64.3 bits (155), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
L V ++F T L +F KYG++ +V + +DR T SRGF FV ++ D+A+ A+ +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 78 DGRVVDGREITV 89
+G+ VDGR+I V
Sbjct: 68 NGKSVDGRQIRV 79
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 64.3 bits (155), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
L V ++F T L +F KYG++ +V + +DR T SRGF FV ++ D+A+ A+ +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 78 DGRVVDGREITV 89
+G+ VDGR+I V
Sbjct: 68 NGKSVDGRQIRV 79
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 47/72 (65%)
Query: 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
L V + F TT + L +F KYG+V +V + +DR + SRGF FV ++ ++A+ A+ +
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67
Query: 78 DGRVVDGREITV 89
+G+ VDGR+I V
Sbjct: 68 NGKSVDGRQIRV 79
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp
PE=2 SV=1
Length = 172
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
L V ++F T L +F KYG++ +V + +DR T SRGF FV ++ D+A+ A+ +
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 78 DGRVVDGREITV 89
+G+ VDGR+I V
Sbjct: 68 NGKSVDGRQIRV 79
>sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1
SV=1
Length = 172
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
L V ++F T L +F KYG++ +V + +DR T SRGF FV ++ D+A+ A+ +
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 78 DGRVVDGREITV 89
+G+ VDGR+I V
Sbjct: 68 NGKSVDGRQIRV 79
>sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP
PE=2 SV=1
Length = 172
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
L V ++F T L +F KYG++ +V + +DR T SRGF FV ++ D+A+ A+ +
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 78 DGRVVDGREITV 89
+G+ VDGR+I V
Sbjct: 68 NGKSVDGRQIRV 79
>sp|O93235|CIRBA_XENLA Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-a
PE=1 SV=2
Length = 166
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
L + + F T D L F KYG++ +V + +DR T SRGF FV ++ D+A+ A+ +
Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66
Query: 78 DGRVVDGREITV 89
+G+ VDGR+I V
Sbjct: 67 NGKSVDGRQIRV 78
>sp|Q6PFR5|TRA2A_MOUSE Transformer-2 protein homolog alpha OS=Mus musculus GN=Tra2a PE=1
SV=1
Length = 281
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 3 HFGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFV 62
H G PD L V ++ TT DL +F +YG + V + D+RTG SRGFAFV
Sbjct: 106 HTGSRANPDPNT--CLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFV 163
Query: 63 RYKYADEAQKAVDRLDGRVVDGREITVQFA 92
++ D++++A++R +G +DGR I V ++
Sbjct: 164 YFERIDDSKEAMERANGMELDGRRIRVDYS 193
>sp|Q13595|TRA2A_HUMAN Transformer-2 protein homolog alpha OS=Homo sapiens GN=TRA2A PE=1
SV=1
Length = 282
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 3 HFGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFV 62
H G PD L V ++ TT DL +F +YG + V + D+RTG SRGFAFV
Sbjct: 108 HTGSRANPDPNT--CLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFV 165
Query: 63 RYKYADEAQKAVDRLDGRVVDGREITVQFA 92
++ D++++A++R +G +DGR I V ++
Sbjct: 166 YFERIDDSKEAMERANGMELDGRRIRVDYS 195
>sp|B0BN49|RBMX2_RAT RNA-binding motif protein, X-linked 2 OS=Rattus norvegicus GN=Rbmx2
PE=2 SV=1
Length = 328
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEA 70
+ +D+ + + + + T D+ +F +YG++V++ + RD++TG S+GF F+ Y+
Sbjct: 31 EYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRST 90
Query: 71 QKAVDRLDGRVVDGREITV-QFAKY 94
AVD +G + GR I V A Y
Sbjct: 91 VLAVDNFNGIKIKGRTIRVDHVANY 115
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 48/81 (59%)
Query: 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76
+L + N++F D +F LF K+G+VV V IP T +GF +V++ ++A+KA+D
Sbjct: 268 TLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDA 327
Query: 77 LDGRVVDGREITVQFAKYGPN 97
L G +D R + + F+ PN
Sbjct: 328 LQGEYIDNRPVRLDFSSPRPN 348
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%)
Query: 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76
++ V +++ + L FE G V+ + +R T SRG+ +V ++ A+KA+
Sbjct: 169 TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQE 228
Query: 77 LDGRVVDGREITVQFAKYGP 96
+ G+ +DGR I + P
Sbjct: 229 MQGKEIDGRPINCDMSTSKP 248
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 48/78 (61%)
Query: 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQ 71
+ D L + + F T + L +F KYG++ +V + +DR T SRGF FV ++ D+A+
Sbjct: 1 MSDEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAK 60
Query: 72 KAVDRLDGRVVDGREITV 89
A+ ++G+ VDGR+I V
Sbjct: 61 DAMMAMNGKAVDGRQIRV 78
>sp|Q6C747|EIF3G_YARLI Eukaryotic translation initiation factor 3 subunit G OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=TIF35 PE=3 SV=1
Length = 294
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 46/80 (57%)
Query: 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKA 73
D +L V N++ T DDL +F KYG + V++ +DR TG RGFAFV Y AQ A
Sbjct: 212 DELTLRVTNLSEEATDDDLRRMFGKYGMINRVYVAKDRDTGRPRGFAFVTYTLKSHAQAA 271
Query: 74 VDRLDGRVVDGREITVQFAK 93
++ +DG D + V ++K
Sbjct: 272 LEAMDGHGFDNLIMKVDYSK 291
>sp|Q8R0F5|RBMX2_MOUSE RNA-binding motif protein, X-linked 2 OS=Mus musculus GN=Rbmx2 PE=1
SV=1
Length = 326
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
+ V + + T D+ +F +YG++V++ + RD++TG S+GF F+ Y+ AVD
Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 78 DGRVVDGREITV 89
+G + GR I V
Sbjct: 98 NGIKIKGRTIRV 109
>sp|O01671|SXL_MEGSC Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE=2 SV=3
Length = 321
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 4 FGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVR 63
F + G +RDT +L V N++ T + L +F KYG++V I RD+ TG RG AF+R
Sbjct: 153 FARPGGEQLRDT-NLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIR 211
Query: 64 YKYADEAQKAVDRLDGRVVDG--REITVQFAK 93
+ +EAQ+A+ L+ + +G + +TV+ A+
Sbjct: 212 FNKREEAQEAISALNNVIPEGGTQPLTVRVAE 243
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 19 LVLNITFRTTAD-DLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
L++N + D +L+ LF G + I RD +TG S G+ FV + +A +A++ L
Sbjct: 80 LIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNL 139
Query: 78 DGRVVDGREITVQFAKYGPNAEKI 101
+G V + I V FA+ P E++
Sbjct: 140 NGITVRNKRIKVSFAR--PGGEQL 161
>sp|Q9Y388|RBMX2_HUMAN RNA-binding motif protein, X-linked 2 OS=Homo sapiens GN=RBMX2 PE=1
SV=2
Length = 322
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 45/77 (58%)
Query: 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQK 72
+D+ + + + + T D+ +F +YG++V++ + RD++TG S+GF F+ Y+
Sbjct: 33 KDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTIL 92
Query: 73 AVDRLDGRVVDGREITV 89
AVD +G + GR I V
Sbjct: 93 AVDNFNGIKIKGRTIRV 109
>sp|Q2H0U6|EIF3G_CHAGB Eukaryotic translation initiation factor 3 subunit G OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 /
NBRC 6347 / NRRL 1970) GN=TIF35 PE=3 SV=1
Length = 303
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 5 GKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRY 64
GK G D D +L V N++ +L +FE++G+V VF+ +DR TG ++GFAF+ Y
Sbjct: 214 GKYGERD--DLATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGMAKGFAFISY 271
Query: 65 KYADEAQKAVDRLDGRVVDGREITVQFAK 93
D+A KA +++DG + V+FAK
Sbjct: 272 ADRDDAVKACNKMDGFGFRHLILRVEFAK 300
>sp|O97018|SXL_CHRRU Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL PE=2 SV=2
Length = 307
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 4 FGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVR 63
+ + G I+DT +L V N+ T D+L +F KYG +V I RD+ TG RG AFVR
Sbjct: 160 YARPGGESIKDT-NLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVR 218
Query: 64 YKYADEAQKAVDRLDGRVVDG--REITVQFAK 93
+ +EAQ+A+ L+ + +G + +TV+ A+
Sbjct: 219 FNKREEAQEAISALNNVIPEGASQPLTVRLAE 250
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 6 KSGPPDIRDTYSL----LVLNITFRTTAD-DLFPLFEKYGKVVDVFIPRDRRTGDSRGFA 60
SG D D L++N + D +L+ LF G + I +D +TG S G+A
Sbjct: 70 NSGGGDCGDNQGCNGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYA 129
Query: 61 FVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYGPNAEKIQ 102
FV + +AQ A+ L+G V + + V +A+ P E I+
Sbjct: 130 FVDFASEIDAQNAIKSLNGVTVRNKRLKVSYAR--PGGESIK 169
>sp|O35698|RBY1A_MOUSE RNA-binding motif protein, Y chromosome, family 1 member A1
OS=Mus musculus GN=Rbmy1a1 PE=1 SV=2
Length = 380
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
+ + + +T L +F ++G V V + RDR T SRGFAF+ ++ +A+ AV +
Sbjct: 10 IFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEM 69
Query: 78 DGRVVDGREITVQFAK 93
+G ++DG+ I V+ A+
Sbjct: 70 NGVILDGKRIKVKQAR 85
>sp|P0C196|PPIL4_USTMA Peptidyl-prolyl cis-trans isomerase-like 4 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=CYP6 PE=3 SV=1
Length = 551
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 47/76 (61%)
Query: 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
L V + T +DDL +F ++GK++ + +D++TGDS +AF+ + D+A++A ++
Sbjct: 264 LFVCKLNPVTRSDDLELIFSRFGKILSCEVIKDKKTGDSLQYAFIEFDKKDDAERAYFKM 323
Query: 78 DGRVVDGREITVQFAK 93
+VD R I V F++
Sbjct: 324 QNVLVDDRRIWVDFSQ 339
>sp|Q10422|YDC1_SCHPO Uncharacterized RNA-binding protein C25G10.01
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC25G10.01 PE=1 SV=1
Length = 297
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%)
Query: 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
L V I R D+L +F K+G V V I R+ T SRGF F+ + +EA A+D L
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 78 DGRVVDGREITVQFAK 93
+ + GR + VQ AK
Sbjct: 163 NSQEFYGRVLNVQKAK 178
>sp|Q60990|RBY1B_MOUSE RNA-binding motif protein, Y chromosome, family 1 member B OS=Mus
musculus GN=Rbmy1b PE=2 SV=3
Length = 380
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77
+ + + +T L +F ++G V V + RDR T SRGFAF+ ++ +A+ AV +
Sbjct: 10 IFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRPADAKNAVKEM 69
Query: 78 DGRVVDGREITVQFAK 93
+G ++DG+ I V+ A+
Sbjct: 70 NGVILDGKRIKVKQAR 85
>sp|Q14151|SAFB2_HUMAN Scaffold attachment factor B2 OS=Homo sapiens GN=SAFB2 PE=1 SV=1
Length = 953
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%)
Query: 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76
+L V ++ T A DL LF KYGKVV + + R+ +R + FV +DEA K +
Sbjct: 408 NLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCISH 467
Query: 77 LDGRVVDGREITVQFAKYGPNAEKI 101
L + GR I+V+ AK P +K+
Sbjct: 468 LHRTELHGRMISVEKAKNEPAGKKL 492
>sp|Q6PG31|RNPS1_DANRE RNA-binding protein with serine-rich domain 1 OS=Danio rerio
GN=rnps1 PE=2 SV=1
Length = 283
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 18 LLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGD-SRGFAFVRYKYADEAQKAVDR 76
L + +T T D + +F YGK+ + +P DR + S+G+A+V Y+ ++AQKA+
Sbjct: 139 LYLGRLTRNVTKDHIQEIFATYGKIKMIDMPSDRLHPNVSKGYAYVEYESPEDAQKALKH 198
Query: 77 LDGRVVDGREITV 89
+DG +DG+EIT
Sbjct: 199 MDGGQIDGQEITA 211
>sp|P0C1I6|PPIL4_RHIO9 Peptidyl-prolyl cis-trans isomerase-like 4 OS=Rhizopus delemar
(strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL
43880) GN=cyp13 PE=3 SV=1
Length = 446
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 4/133 (3%)
Query: 4 FGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVR 63
F + PP+ L V + T +DL +F ++G + I RDR+TGDS +AFV
Sbjct: 234 FAEVKPPE----NVLFVCKLNPVTRDEDLEMIFSRFGLIHSCEIIRDRQTGDSLSYAFVE 289
Query: 64 YKYADEAQKAVDRLDGRVVDGREITVQFAKYGPNAEKIQQGRIVESSSKSKGRSRSRSPR 123
++ ++A++A ++ ++D R I V F++ K + + +S G + + R
Sbjct: 290 FENKEDAEEAYFKMQSVLIDDRRIHVDFSQSVSKLHKDWIAKRTGAGKESMGGFDNLTKR 349
Query: 124 PRYRDEHRDKDYR 136
RYR+E + D R
Sbjct: 350 TRYREEGENNDKR 362
>sp|Q5ARI5|PPIL4_EMENI Peptidyl-prolyl cis-trans isomerase-like 4 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=cyp6 PE=3 SV=1
Length = 461
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 10/170 (5%)
Query: 4 FGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVR 63
F + PP+ L V + T +DL +F ++GK++ + RD+RTGDS +AF+
Sbjct: 240 FAEVKPPE----NVLFVCKLNPVTQDEDLELIFSRFGKILSCEVIRDKRTGDSLQYAFIE 295
Query: 64 YKYADEAQKAVDRLDGRVVDGREITVQFAKYGPNAEKIQQGRIVESSSKSKGRSRSRSPR 123
++ + ++A ++ G ++D I V F++ + K+ + + K RS R
Sbjct: 296 FESQKDCEQAYFKMQGVLIDDHRIHVDFSQ---SVSKLSESW---RDATVKKRSAQRGGF 349
Query: 124 PRYRDEHRDKDYRRRSRSRSRERYDRDRYRSKERDHRRRSRSRSASPDRH 173
+ + YR +R R Y+ ++ R R RS S SP R+
Sbjct: 350 GGVAGLEKKRQYRASENARERANYNMVFDKNDNRRSAPRERSYSRSPQRN 399
>sp|Q5XG24|RNP1A_XENLA RNA-binding protein with serine-rich domain 1-A OS=Xenopus laevis
GN=rnps1-a PE=2 SV=1
Length = 283
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 23 ITFRTTADDLFPLFEKYGKVVDVFIPRDR-RTGDSRGFAFVRYKYADEAQKAVDRLDGRV 81
+T T D + +F YGK+ + +P DR S+G+A+V ++ +EA+KA+ +DG
Sbjct: 145 LTRNVTKDHILEIFSTYGKIKMIDMPVDRYHPHLSKGYAYVEFEAPEEAEKALKHMDGGQ 204
Query: 82 VDGREITV 89
+DG+EIT
Sbjct: 205 IDGQEITA 212
>sp|Q3KPW1|RNP1B_XENLA RNA-binding protein with serine-rich domain 1-B OS=Xenopus laevis
GN=rnps1-b PE=2 SV=1
Length = 283
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 23 ITFRTTADDLFPLFEKYGKVVDVFIPRDR-RTGDSRGFAFVRYKYADEAQKAVDRLDGRV 81
+T T D + +F YGK+ + +P DR S+G+A+V ++ +EA+KA+ +DG
Sbjct: 145 LTRNVTKDHILEIFSTYGKIKMIDMPVDRYHPHLSKGYAYVEFEAPEEAEKALKHMDGGQ 204
Query: 82 VDGREITV 89
+DG+EIT
Sbjct: 205 IDGQEITA 212
>sp|Q28E41|RNPS1_XENTR RNA-binding protein with serine-rich domain 1 OS=Xenopus tropicalis
GN=rnps1 PE=2 SV=1
Length = 309
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 23 ITFRTTADDLFPLFEKYGKVVDVFIPRDR-RTGDSRGFAFVRYKYADEAQKAVDRLDGRV 81
+T T D + +F YGK+ + +P DR S+G+A+V ++ +EA+KA+ +DG
Sbjct: 171 LTRNVTKDHILEIFSTYGKIKMIDMPVDRYHPHLSKGYAYVEFEAPEEAEKALKHMDGGQ 230
Query: 82 VDGREITV 89
+DG+EIT
Sbjct: 231 IDGQEITA 238
>sp|Q5NVM8|RNPS1_PONAB RNA-binding protein with serine-rich domain 1 OS=Pongo abelii
GN=RNPS1 PE=2 SV=1
Length = 305
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 23 ITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGD-SRGFAFVRYKYADEAQKAVDRLDGRV 81
+T T D + +F YGK+ + +P +R S+G+A+V ++ DEA+KA+ +DG
Sbjct: 168 LTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQ 227
Query: 82 VDGREITV 89
+DG+EIT
Sbjct: 228 IDGQEITA 235
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,832,317
Number of Sequences: 539616
Number of extensions: 4230370
Number of successful extensions: 46322
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1421
Number of HSP's successfully gapped in prelim test: 986
Number of HSP's that attempted gapping in prelim test: 20712
Number of HSP's gapped (non-prelim): 10427
length of query: 251
length of database: 191,569,459
effective HSP length: 115
effective length of query: 136
effective length of database: 129,513,619
effective search space: 17613852184
effective search space used: 17613852184
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)