Query 025517
Match_columns 251
No_of_seqs 395 out of 2615
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 11:56:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025517.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025517hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_S U1-70K; protein-RNA com 99.9 1.6E-23 5.5E-28 188.7 21.3 85 13-97 100-184 (437)
2 4fxv_A ELAV-like protein 1; RN 99.9 1.4E-23 4.7E-28 151.6 11.0 82 13-94 17-98 (99)
3 3s8s_A Histone-lysine N-methyl 99.9 3.3E-22 1.1E-26 147.1 11.2 85 14-98 5-89 (110)
4 1x5u_A Splicing factor 3B subu 99.9 4.8E-22 1.7E-26 144.7 11.9 91 7-97 7-97 (105)
5 3ex7_B RNA-binding protein 8A; 99.9 3.3E-22 1.1E-26 150.4 10.1 91 7-97 14-104 (126)
6 3bs9_A Nucleolysin TIA-1 isofo 99.9 4.8E-22 1.7E-26 139.6 10.3 83 13-95 4-86 (87)
7 1whw_A Hypothetical protein ri 99.9 9.5E-22 3.2E-26 141.6 12.1 87 11-97 4-90 (99)
8 2dgo_A Cytotoxic granule-assoc 99.9 1.9E-21 6.5E-26 143.9 14.0 90 9-98 9-98 (115)
9 2dnm_A SRP46 splicing factor; 99.9 5.4E-22 1.8E-26 144.0 10.7 89 8-96 6-94 (103)
10 3md1_A Nuclear and cytoplasmic 99.9 8.6E-22 3E-26 137.1 11.2 82 15-96 1-82 (83)
11 2cqc_A Arginine/serine-rich sp 99.9 1E-21 3.4E-26 140.3 11.6 87 8-94 8-94 (95)
12 2lkz_A RNA-binding protein 5; 99.9 2.5E-22 8.4E-27 143.8 8.2 85 10-94 4-94 (95)
13 2e5h_A Zinc finger CCHC-type a 99.9 1.1E-21 3.7E-26 139.9 11.5 84 10-93 11-94 (94)
14 2dgs_A DAZ-associated protein 99.9 1.9E-21 6.4E-26 140.1 12.7 87 10-97 5-91 (99)
15 1x4h_A RNA-binding protein 28; 99.9 1.7E-21 5.9E-26 143.1 12.7 91 7-97 7-103 (111)
16 1x4c_A Splicing factor, argini 99.9 2.9E-21 9.9E-26 141.5 13.7 82 6-94 6-92 (108)
17 2cq0_A Eukaryotic translation 99.9 1.3E-21 4.5E-26 141.9 11.6 87 11-97 11-97 (103)
18 2cqd_A RNA-binding region cont 99.9 3.5E-21 1.2E-25 142.7 13.8 90 8-98 10-99 (116)
19 2lxi_A RNA-binding protein 10; 99.9 1.8E-22 6.1E-27 143.5 6.5 84 15-98 1-86 (91)
20 1x5s_A Cold-inducible RNA-bind 99.9 9.2E-22 3.1E-26 142.5 10.4 88 10-97 7-94 (102)
21 1p27_B RNA-binding protein 8A; 99.9 1.1E-21 3.8E-26 143.0 10.9 88 9-96 17-104 (106)
22 2dnz_A Probable RNA-binding pr 99.9 1.7E-21 5.9E-26 139.1 11.7 84 14-97 4-87 (95)
23 2fy1_A RNA-binding motif prote 99.9 2.1E-21 7.2E-26 144.1 12.5 84 12-96 4-87 (116)
24 2cph_A RNA binding motif prote 99.9 2.6E-21 8.9E-26 141.2 12.4 90 8-97 8-99 (107)
25 2cqb_A Peptidyl-prolyl CIS-tra 99.9 1E-21 3.6E-26 142.2 9.9 87 11-97 8-94 (102)
26 3beg_B Splicing factor, argini 99.9 2E-22 6.8E-27 149.5 6.1 78 5-89 6-83 (115)
27 2cpe_A RNA-binding protein EWS 99.9 1.7E-21 5.7E-26 143.8 11.0 87 11-97 11-105 (113)
28 2do4_A Squamous cell carcinoma 99.9 4.4E-21 1.5E-25 138.4 12.9 85 11-96 13-97 (100)
29 2la6_A RNA-binding protein FUS 99.9 2.3E-21 8E-26 139.7 11.1 85 9-93 7-99 (99)
30 3mdf_A Peptidyl-prolyl CIS-tra 99.9 1.5E-21 5.2E-26 136.5 9.8 81 13-93 5-85 (85)
31 3ulh_A THO complex subunit 4; 99.9 2.1E-21 7E-26 141.8 10.9 85 8-93 22-106 (107)
32 1oo0_B CG8781-PA, drosophila Y 99.9 1.8E-21 6.2E-26 142.9 10.4 90 7-96 18-107 (110)
33 2cpz_A CUG triplet repeat RNA- 99.9 1.9E-21 6.6E-26 143.9 10.5 85 12-96 22-106 (115)
34 2x1f_A MRNA 3'-END-processing 99.9 3.9E-21 1.3E-25 137.7 11.5 84 15-98 2-85 (96)
35 3p5t_L Cleavage and polyadenyl 99.9 5.6E-22 1.9E-26 140.5 6.5 82 16-97 2-85 (90)
36 2dng_A Eukaryotic translation 99.9 7.2E-21 2.5E-25 138.1 12.6 86 9-96 9-94 (103)
37 1x5t_A Splicing factor 3B subu 99.9 2.1E-21 7.3E-26 138.9 9.4 83 14-96 4-87 (96)
38 1wi8_A EIF-4B, eukaryotic tran 99.9 5E-21 1.7E-25 139.2 11.5 87 9-97 9-96 (104)
39 2dnh_A Bruno-like 5, RNA bindi 99.9 9.5E-21 3.2E-25 137.8 12.9 85 12-97 12-99 (105)
40 2dgp_A Bruno-like 4, RNA bindi 99.9 3.7E-21 1.2E-25 140.3 10.7 88 9-96 7-97 (106)
41 2d9p_A Polyadenylate-binding p 99.9 6.9E-21 2.3E-25 138.1 12.0 85 11-97 11-95 (103)
42 2jrs_A RNA-binding protein 39; 99.9 3.9E-21 1.3E-25 140.9 10.7 87 9-95 20-106 (108)
43 2kxn_B Transformer-2 protein h 99.9 3.1E-21 1E-25 145.9 10.3 87 10-96 41-127 (129)
44 2dgv_A HnRNP M, heterogeneous 99.9 4.5E-21 1.5E-25 136.2 10.4 86 9-96 2-87 (92)
45 1rk8_A CG8781-PA, CG8781-PA pr 99.9 3.9E-21 1.3E-25 151.4 11.2 90 8-97 65-154 (165)
46 2ywk_A Putative RNA-binding pr 99.8 3.7E-21 1.3E-25 137.4 9.9 85 9-94 10-94 (95)
47 1x4a_A Splicing factor, argini 99.8 8.6E-21 2.9E-25 139.1 12.1 85 9-96 16-100 (109)
48 2div_A TRNA selenocysteine ass 99.8 4.4E-21 1.5E-25 138.1 10.2 85 12-96 6-95 (99)
49 2do0_A HnRNP M, heterogeneous 99.8 2.1E-20 7.1E-25 138.0 14.1 85 10-95 10-94 (114)
50 2khc_A Testis-specific RNP-typ 99.8 5.9E-21 2E-25 141.9 11.0 83 11-93 36-118 (118)
51 2cq3_A RNA-binding protein 9; 99.8 1.6E-20 5.6E-25 136.1 12.9 87 9-97 9-95 (103)
52 2dhg_A TRNA selenocysteine ass 99.8 6.8E-21 2.3E-25 138.3 10.4 87 10-97 4-92 (104)
53 2cpf_A RNA binding motif prote 99.8 4E-21 1.4E-25 138.1 9.0 84 14-97 4-90 (98)
54 2dis_A Unnamed protein product 99.8 1.4E-20 4.8E-25 137.8 12.0 87 12-98 5-95 (109)
55 3s7r_A Heterogeneous nuclear r 99.8 1E-20 3.6E-25 132.9 10.8 83 9-92 5-87 (87)
56 1h2v_Z 20 kDa nuclear CAP bind 99.8 9.5E-21 3.2E-25 147.7 11.7 86 12-97 36-121 (156)
57 3ns6_A Eukaryotic translation 99.8 1.8E-21 6E-26 140.7 6.7 82 14-95 5-93 (100)
58 2dgu_A Heterogeneous nuclear r 99.8 1.6E-20 5.5E-25 136.2 11.6 84 7-98 3-86 (103)
59 2cqi_A Nucleolysin TIAR; RNA r 99.8 2.1E-20 7.3E-25 135.5 12.1 86 9-96 9-94 (103)
60 2dgx_A KIAA0430 protein; RRM d 99.8 1.2E-20 4E-25 135.3 10.5 84 11-97 5-92 (96)
61 4f25_A Polyadenylate-binding p 99.8 8.7E-21 3E-25 140.5 10.1 81 15-97 5-85 (115)
62 1p1t_A Cleavage stimulation fa 99.8 2.2E-21 7.5E-26 140.9 6.7 88 13-100 6-93 (104)
63 1u6f_A Tcubp1, RNA-binding pro 99.8 1.3E-20 4.3E-25 144.1 11.2 87 11-97 38-124 (139)
64 2dh8_A DAZ-associated protein 99.8 6.3E-21 2.2E-25 138.8 9.0 88 9-97 10-97 (105)
65 2cqp_A RNA-binding protein 12; 99.8 7.2E-21 2.5E-25 136.7 9.2 84 12-95 12-95 (98)
66 4a8x_A RNA-binding protein wit 99.8 7.5E-21 2.6E-25 133.7 8.8 82 14-95 3-85 (88)
67 2kt5_A RNA and export factor-b 99.8 3.3E-20 1.1E-24 139.1 12.3 86 10-96 30-115 (124)
68 3ucg_A Polyadenylate-binding p 99.8 2.2E-20 7.6E-25 131.6 10.6 80 15-95 6-85 (89)
69 2dgw_A Probable RNA-binding pr 99.8 3.2E-20 1.1E-24 131.5 11.3 84 10-96 5-88 (91)
70 2ek1_A RNA-binding protein 12; 99.8 5E-21 1.7E-25 136.7 7.1 82 13-94 13-94 (95)
71 3n9u_C Cleavage and polyadenyl 99.8 1.8E-20 6.2E-25 146.2 10.5 82 14-95 54-137 (156)
72 2cqg_A TDP-43, TAR DNA-binding 99.8 5.9E-20 2E-24 133.2 12.4 87 9-97 9-95 (103)
73 3r27_A HnRNP L, heterogeneous 99.8 2.4E-20 8.3E-25 134.0 10.0 78 12-95 18-97 (100)
74 1s79_A Lupus LA protein; RRM, 99.8 2.1E-20 7.1E-25 135.8 9.7 81 12-94 8-88 (103)
75 2cpi_A CCR4-NOT transcription 99.8 2.4E-20 8.2E-25 137.3 10.0 87 11-97 11-103 (111)
76 2lea_A Serine/arginine-rich sp 99.8 8.1E-21 2.8E-25 144.7 7.6 89 9-97 41-129 (135)
77 1wg5_A Heterogeneous nuclear r 99.8 5.8E-20 2E-24 133.6 11.7 86 9-96 9-95 (104)
78 1sjq_A Polypyrimidine tract-bi 99.8 1.3E-20 4.4E-25 136.7 8.0 80 13-98 14-95 (105)
79 2dnq_A RNA-binding protein 4B; 99.8 4.9E-20 1.7E-24 130.3 10.8 79 11-97 4-82 (90)
80 2mss_A Protein (musashi1); RNA 99.8 1.5E-20 5E-25 128.4 7.6 75 17-92 1-75 (75)
81 1x4e_A RNA binding motif, sing 99.8 5.3E-21 1.8E-25 133.8 5.5 81 13-93 3-83 (85)
82 1why_A Hypothetical protein ri 99.8 8.1E-20 2.8E-24 131.0 11.9 80 11-96 13-94 (97)
83 2j76_E EIF-4B, EIF4B, eukaryot 99.8 9.8E-21 3.3E-25 136.7 7.0 84 10-95 14-98 (100)
84 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 4.9E-20 1.7E-24 140.7 11.1 82 11-92 59-140 (140)
85 2cq4_A RNA binding motif prote 99.8 1.8E-20 6.1E-25 138.5 8.2 81 15-96 25-105 (114)
86 2a3j_A U1 small nuclear ribonu 99.8 4.6E-20 1.6E-24 138.9 10.4 89 9-100 23-115 (127)
87 1x4b_A Heterogeneous nuclear r 99.8 3.8E-20 1.3E-24 137.1 9.8 82 15-97 27-108 (116)
88 2jvr_A Nucleolar protein 3; RN 99.8 2.3E-20 8E-25 137.2 8.5 81 12-96 25-106 (111)
89 1wex_A Hypothetical protein (r 99.8 6.8E-20 2.3E-24 133.3 10.8 82 10-97 10-93 (104)
90 2cq1_A PTB-like protein L; RRM 99.8 9.9E-20 3.4E-24 131.7 11.6 81 11-97 11-93 (101)
91 2rs2_A Musashi-1, RNA-binding 99.8 4.4E-20 1.5E-24 135.5 9.7 84 12-96 22-105 (109)
92 1x4d_A Matrin 3; structural ge 99.8 3E-20 1E-24 134.5 8.7 79 12-96 12-93 (102)
93 2cpj_A Non-POU domain-containi 99.8 6.6E-20 2.3E-24 132.0 10.5 83 8-96 8-90 (99)
94 2m2b_A RNA-binding protein 10; 99.8 1.6E-20 5.5E-25 142.2 7.6 85 11-96 19-109 (131)
95 2cpy_A RNA-binding protein 12; 99.8 4E-20 1.4E-24 136.7 9.5 85 12-98 12-97 (114)
96 2db1_A Heterogeneous nuclear r 99.8 4.1E-20 1.4E-24 137.5 9.6 85 10-96 12-99 (118)
97 1wez_A HnRNP H', FTP-3, hetero 99.8 4.9E-20 1.7E-24 133.6 9.7 84 10-96 10-93 (102)
98 1wel_A RNA-binding protein 12; 99.8 1.6E-20 5.4E-25 140.9 7.3 85 11-96 21-105 (124)
99 2nlw_A Eukaryotic translation 99.8 5.3E-20 1.8E-24 134.0 9.9 83 11-95 11-100 (105)
100 2kn4_A Immunoglobulin G-bindin 99.8 9.5E-20 3.2E-24 142.1 11.9 84 12-95 67-150 (158)
101 2jwn_A Embryonic polyadenylate 99.8 6.2E-20 2.1E-24 137.5 10.1 80 15-95 36-115 (124)
102 2ytc_A PRE-mRNA-splicing facto 99.8 6.9E-20 2.4E-24 128.0 9.6 79 9-93 6-85 (85)
103 1x5o_A RNA binding motif, sing 99.8 1.5E-19 5.2E-24 133.4 11.9 82 12-94 22-111 (114)
104 2fc9_A NCL protein; structure 99.8 1.2E-19 4.1E-24 131.1 11.0 82 11-96 11-92 (101)
105 2dgt_A RNA-binding protein 30; 99.8 1.3E-19 4.6E-24 128.6 11.0 80 10-97 5-84 (92)
106 2ad9_A Polypyrimidine tract-bi 99.8 6.5E-20 2.2E-24 136.1 9.6 81 11-97 27-109 (119)
107 2err_A Ataxin-2-binding protei 99.8 6.5E-20 2.2E-24 134.5 9.4 83 11-95 25-107 (109)
108 2wbr_A GW182, gawky, LD47780P; 99.8 4.9E-20 1.7E-24 128.2 8.2 73 15-93 7-79 (89)
109 3q2s_C Cleavage and polyadenyl 99.8 5.1E-20 1.8E-24 152.4 9.6 82 14-95 67-150 (229)
110 1uaw_A Mouse-musashi-1; RNP-ty 99.8 2.4E-20 8.4E-25 127.8 6.4 76 16-92 1-76 (77)
111 2ki2_A SS-DNA binding protein 99.8 1.5E-20 5.1E-25 132.9 5.4 81 16-97 2-82 (90)
112 2e5j_A Methenyltetrahydrofolat 99.8 1.1E-19 3.9E-24 130.3 9.8 81 11-96 15-95 (97)
113 2hgl_A HNRPF protein, heteroge 99.8 7.9E-20 2.7E-24 139.2 9.2 84 10-95 39-125 (136)
114 2fc8_A NCL protein; structure 99.8 1.7E-19 5.9E-24 130.4 10.5 85 10-97 10-94 (102)
115 2f3j_A RNA and export factor b 99.8 1E-19 3.6E-24 144.8 10.1 85 11-96 84-168 (177)
116 2dnp_A RNA-binding protein 14; 99.8 1.4E-19 4.7E-24 128.0 9.6 77 12-96 6-82 (90)
117 2lmi_A GRSF-1, G-rich sequence 99.8 4.6E-20 1.6E-24 134.9 7.4 86 9-96 5-93 (107)
118 2dnn_A RNA-binding protein 12; 99.8 1.1E-19 3.8E-24 133.2 9.2 83 10-95 11-93 (109)
119 1nu4_A U1A RNA binding domain; 99.8 5.9E-20 2E-24 131.6 7.3 86 10-98 3-92 (97)
120 2cpx_A Hypothetical protein FL 99.8 2.5E-20 8.5E-25 137.8 5.1 81 12-96 22-106 (115)
121 1x4g_A Nucleolysin TIAR; struc 99.8 2.2E-19 7.4E-24 131.6 9.8 79 13-97 23-101 (109)
122 2cpd_A Apobec-1 stimulating pr 99.8 7.6E-19 2.6E-23 126.4 12.1 79 10-96 10-90 (99)
123 2jvo_A Nucleolar protein 3; nu 99.8 2E-19 6.8E-24 131.7 9.1 79 11-97 27-105 (108)
124 2krb_A Eukaryotic translation 99.8 1.2E-19 4E-24 125.9 7.3 73 15-89 1-80 (81)
125 2xnq_A Nuclear polyadenylated 99.8 5.3E-19 1.8E-23 126.9 10.7 78 10-95 17-95 (97)
126 1fj7_A Nucleolin RBD1, protein 99.8 3.2E-20 1.1E-24 134.1 4.0 82 13-96 15-96 (101)
127 1whx_A Hypothetical protein ri 99.8 1.5E-19 5.2E-24 133.0 7.7 77 13-95 8-84 (111)
128 1fjc_A Nucleolin RBD2, protein 99.8 1.6E-19 5.6E-24 129.1 7.5 82 10-96 11-92 (96)
129 2kvi_A Nuclear polyadenylated 99.8 2.7E-19 9.2E-24 128.1 8.6 80 11-98 6-86 (96)
130 2hvz_A Splicing factor, argini 99.8 1.6E-19 5.4E-24 130.4 7.4 76 16-96 1-76 (101)
131 3lqv_A PRE-mRNA branch site pr 99.8 5E-19 1.7E-23 130.8 10.2 79 13-94 6-84 (115)
132 2lcw_A RNA-binding protein FUS 99.7 7.1E-21 2.4E-25 141.1 0.0 87 12-98 4-98 (116)
133 1iqt_A AUF1, heterogeneous nuc 99.8 8.3E-20 2.8E-24 124.6 5.1 75 17-92 1-75 (75)
134 2cqh_A IGF-II mRNA-binding pro 99.8 2.5E-19 8.7E-24 127.4 7.8 78 12-96 5-84 (93)
135 1x4f_A Matrin 3; structural ge 99.8 2.7E-19 9.3E-24 131.3 8.1 79 12-96 22-103 (112)
136 2e44_A Insulin-like growth fac 99.8 6.2E-19 2.1E-23 126.0 9.8 82 11-96 11-93 (96)
137 2la4_A Nuclear and cytoplasmic 99.8 3.2E-19 1.1E-23 128.8 8.2 75 14-94 26-100 (101)
138 2hgn_A Heterogeneous nuclear r 99.8 1.4E-19 4.8E-24 138.2 5.6 84 11-97 42-125 (139)
139 2e5g_A U6 snRNA-specific termi 99.8 1E-18 3.5E-23 124.5 9.7 78 12-95 5-82 (94)
140 1wf1_A RNA-binding protein RAL 99.8 6E-19 2.1E-23 129.4 8.7 75 13-95 25-100 (110)
141 3egn_A RNA-binding protein 40; 99.8 1.3E-19 4.4E-24 139.2 5.0 87 12-98 42-133 (143)
142 4f02_A Polyadenylate-binding p 99.8 1.5E-18 5E-23 142.0 11.2 86 12-97 12-97 (213)
143 2xs2_A Deleted in azoospermia- 99.8 3.5E-19 1.2E-23 128.8 6.3 84 11-97 5-88 (102)
144 2diu_A KIAA0430 protein; struc 99.8 1.6E-18 5.6E-23 121.7 9.3 76 12-97 5-86 (96)
145 1x5p_A Negative elongation fac 99.8 4.6E-18 1.6E-22 121.9 12.0 79 11-97 11-89 (97)
146 2i2y_A Fusion protein consists 99.8 1.9E-18 6.5E-23 133.7 10.6 81 10-95 68-148 (150)
147 2e5i_A Heterogeneous nuclear r 99.8 3.4E-18 1.2E-22 127.8 11.3 76 15-96 25-103 (124)
148 3md3_A Nuclear and cytoplasmic 99.8 3.5E-18 1.2E-22 133.2 12.0 83 11-93 83-165 (166)
149 2hgm_A HNRPF protein, heteroge 99.8 9.9E-19 3.4E-23 131.2 8.4 80 11-93 38-119 (126)
150 2cq2_A Hypothetical protein LO 99.8 9.2E-19 3.1E-23 128.7 7.7 79 13-97 23-108 (114)
151 1sjr_A Polypyrimidine tract-bi 99.8 2.7E-18 9.4E-23 133.7 10.2 80 12-95 43-124 (164)
152 2dha_A FLJ20171 protein; RRM d 99.8 8E-19 2.7E-23 131.3 6.8 81 13-95 21-105 (123)
153 1fxl_A Paraneoplastic encephal 99.8 5.2E-18 1.8E-22 132.3 11.5 82 15-96 2-83 (167)
154 1wg1_A KIAA1579 protein, homol 99.8 1.8E-18 6.2E-23 121.8 7.9 76 14-96 4-79 (88)
155 2dnl_A Cytoplasmic polyadenyla 99.8 2.1E-18 7.2E-23 127.4 8.4 80 11-93 4-86 (114)
156 2qfj_A FBP-interacting repress 99.8 5.7E-18 1.9E-22 137.9 11.7 85 13-97 123-207 (216)
157 1b7f_A Protein (SXL-lethal pro 99.8 3.6E-18 1.2E-22 133.6 9.9 83 14-96 2-84 (168)
158 2j8a_A Histone-lysine N-methyl 99.7 3.3E-18 1.1E-22 126.9 8.3 80 16-95 3-96 (136)
159 3zzy_A Polypyrimidine tract-bi 99.7 8.7E-18 3E-22 126.2 10.2 78 13-95 26-106 (130)
160 1l3k_A Heterogeneous nuclear r 99.7 8.6E-18 2.9E-22 134.8 10.5 87 9-96 7-93 (196)
161 2yh0_A Splicing factor U2AF 65 99.7 1E-17 3.5E-22 134.6 11.0 84 13-96 112-195 (198)
162 2g4b_A Splicing factor U2AF 65 99.7 1.1E-17 3.7E-22 131.5 10.5 80 13-92 92-171 (172)
163 1l3k_A Heterogeneous nuclear r 99.7 1.2E-17 4.1E-22 134.0 10.9 85 13-98 102-186 (196)
164 2cjk_A Nuclear polyadenylated 99.7 6.8E-18 2.3E-22 132.0 9.0 80 15-95 87-166 (167)
165 3d2w_A TAR DNA-binding protein 99.7 9.3E-18 3.2E-22 118.5 8.8 77 11-96 7-85 (89)
166 2bz2_A Negative elongation fac 99.7 1.3E-17 4.6E-22 124.4 9.3 79 12-98 36-114 (121)
167 4f02_A Polyadenylate-binding p 99.7 9.4E-18 3.2E-22 137.1 8.7 82 14-97 102-183 (213)
168 1b7f_A Protein (SXL-lethal pro 99.7 3.9E-17 1.3E-21 127.7 11.9 81 12-92 86-168 (168)
169 2hzc_A Splicing factor U2AF 65 99.7 1.6E-17 5.4E-22 116.4 8.4 72 13-91 4-86 (87)
170 2qfj_A FBP-interacting repress 99.7 2.8E-17 9.7E-22 133.8 10.3 82 15-96 28-109 (216)
171 2pe8_A Splicing factor 45; RRM 99.7 4.9E-17 1.7E-21 118.3 10.3 82 13-94 6-93 (105)
172 3u1l_A PRE-mRNA-splicing facto 99.7 1.5E-17 5.2E-22 137.6 8.3 83 11-99 130-233 (240)
173 3tyt_A Heterogeneous nuclear r 99.7 3.2E-17 1.1E-21 133.4 10.1 77 14-95 3-80 (205)
174 3md3_A Nuclear and cytoplasmic 99.7 3.6E-17 1.2E-21 127.4 9.8 80 16-96 1-80 (166)
175 1fxl_A Paraneoplastic encephal 99.7 6.2E-17 2.1E-21 126.2 10.7 80 13-92 86-167 (167)
176 1wf0_A TDP-43, TAR DNA-binding 99.7 1.9E-17 6.4E-22 116.4 6.8 77 14-97 4-80 (88)
177 2adc_A Polypyrimidine tract-bi 99.7 3.7E-17 1.3E-21 135.1 9.5 79 12-95 31-110 (229)
178 3nmr_A Cugbp ELAV-like family 99.7 8.9E-17 3.1E-21 126.3 10.4 80 13-93 93-175 (175)
179 3pgw_A U1-A; protein-RNA compl 99.7 1.4E-16 4.7E-21 135.3 11.9 85 10-97 4-92 (282)
180 3nmr_A Cugbp ELAV-like family 99.7 1E-16 3.5E-21 126.0 9.7 82 14-95 2-88 (175)
181 1fje_B Nucleolin RBD12, protei 99.7 7.8E-17 2.7E-21 127.1 9.0 79 12-95 96-174 (175)
182 2voo_A Lupus LA protein; RNA-b 99.7 1.7E-16 5.8E-21 127.9 10.6 78 15-94 109-186 (193)
183 2ghp_A U4/U6 snRNA-associated 99.7 2E-16 6.9E-21 134.9 10.7 84 12-96 207-292 (292)
184 2cjk_A Nuclear polyadenylated 99.7 8.8E-17 3E-21 125.6 7.6 79 14-94 2-80 (167)
185 3sde_A Paraspeckle component 1 99.7 3E-16 1E-20 132.1 10.2 86 3-94 10-95 (261)
186 2dit_A HIV TAT specific factor 99.7 8.5E-16 2.9E-20 112.9 11.1 82 11-96 11-103 (112)
187 3smz_A Protein raver-1, ribonu 99.7 5.2E-16 1.8E-20 131.8 11.0 87 12-99 181-268 (284)
188 3pgw_A U1-A; protein-RNA compl 99.6 7E-16 2.4E-20 130.9 10.7 76 13-93 205-281 (282)
189 3smz_A Protein raver-1, ribonu 99.6 1.2E-15 4.2E-20 129.5 11.2 82 14-95 94-175 (284)
190 1qm9_A Polypyrimidine tract-bi 99.6 4.8E-16 1.6E-20 125.1 7.6 77 15-96 3-80 (198)
191 3tyt_A Heterogeneous nuclear r 99.6 6.7E-16 2.3E-20 125.6 8.2 77 14-92 122-204 (205)
192 3v4m_A Splicing factor U2AF 65 99.6 1.3E-15 4.4E-20 110.7 8.5 81 14-94 4-96 (105)
193 1fje_B Nucleolin RBD12, protei 99.6 1.1E-16 3.9E-21 126.1 3.0 85 10-96 8-92 (175)
194 2adc_A Polypyrimidine tract-bi 99.6 2.9E-15 9.8E-20 123.7 10.4 78 13-95 149-228 (229)
195 1jmt_A Splicing factor U2AF 35 99.6 4.1E-16 1.4E-20 113.2 4.2 73 20-93 20-104 (104)
196 3ue2_A Poly(U)-binding-splicin 99.6 2.2E-15 7.6E-20 111.7 8.3 81 14-94 19-108 (118)
197 1qm9_A Polypyrimidine tract-bi 99.6 1.9E-15 6.6E-20 121.5 8.6 78 13-95 118-197 (198)
198 2ghp_A U4/U6 snRNA-associated 99.6 3.4E-15 1.2E-19 127.2 8.9 83 14-97 116-199 (292)
199 2g4b_A Splicing factor U2AF 65 99.6 5.3E-15 1.8E-19 116.0 9.1 76 13-95 2-88 (172)
200 3sde_A Paraspeckle component 1 99.6 4.3E-15 1.5E-19 125.0 9.1 81 14-95 95-179 (261)
201 2d9o_A DNAJ (HSP40) homolog, s 99.6 2.8E-14 9.5E-19 102.6 11.4 76 15-97 10-92 (100)
202 2yh0_A Splicing factor U2AF 65 99.6 9.9E-15 3.4E-19 117.0 8.8 75 14-95 3-88 (198)
203 3tht_A Alkylated DNA repair pr 99.5 1.9E-14 6.7E-19 125.0 9.3 76 12-93 15-97 (345)
204 1owx_A Lupus LA protein, SS-B, 99.5 1.1E-13 3.7E-18 102.3 10.8 83 8-96 11-97 (121)
205 3s6e_A RNA-binding protein 39; 99.5 8.2E-14 2.8E-18 102.5 9.4 78 13-94 5-92 (114)
206 2dnr_A Synaptojanin-1; RRM dom 99.4 2.1E-12 7.1E-17 89.8 8.8 71 15-94 7-85 (91)
207 1ufw_A Synaptojanin 2; RNP dom 99.2 1.6E-11 5.3E-16 85.8 4.7 70 15-93 15-93 (95)
208 3dxb_A Thioredoxin N-terminall 99.2 2.3E-10 7.8E-15 93.6 11.0 80 15-94 124-212 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.9 8.7E-09 3E-13 73.4 7.8 73 14-92 20-97 (117)
210 1wey_A Calcipressin 1; structu 98.5 3E-07 1E-11 65.2 6.4 75 15-95 5-84 (104)
211 1uw4_A UPF3X; nonsense mediate 98.4 2E-06 6.7E-11 60.0 8.4 80 16-95 2-88 (91)
212 2dhx_A Poly (ADP-ribose) polym 98.2 1.7E-05 5.8E-10 56.0 10.7 72 14-94 7-83 (104)
213 1wwh_A Nucleoporin 35, nucleop 98.2 6.7E-06 2.3E-10 59.8 8.3 74 12-93 21-95 (119)
214 1whv_A Poly(A)-specific ribonu 98.1 6.2E-06 2.1E-10 57.5 6.8 58 12-78 13-70 (100)
215 2l08_A Regulator of nonsense t 98.0 1.1E-05 3.6E-10 56.6 6.1 81 14-94 8-95 (97)
216 3ctr_A Poly(A)-specific ribonu 98.0 8.1E-06 2.8E-10 57.1 5.3 55 15-78 6-60 (101)
217 3p3d_A Nucleoporin 53; structu 97.5 0.00014 4.9E-09 53.6 5.8 78 14-93 6-97 (132)
218 3pq1_A Poly(A) RNA polymerase; 97.0 0.00036 1.2E-08 62.6 3.1 55 16-76 54-108 (464)
219 2i2y_A Fusion protein consists 96.6 0.00096 3.3E-08 50.4 2.5 41 53-94 9-50 (150)
220 2kn4_A Immunoglobulin G-bindin 96.5 0.002 6.8E-08 49.0 3.6 34 45-80 3-36 (158)
221 4eyt_A Telomerase associated p 95.8 0.064 2.2E-06 36.5 7.9 58 12-77 9-66 (129)
222 3pgw_S U1-70K; protein-RNA com 95.1 0.14 4.9E-06 45.5 10.4 11 66-76 115-125 (437)
223 3d45_A Poly(A)-specific ribonu 94.8 0.072 2.4E-06 48.4 7.6 57 14-79 439-495 (507)
224 2g0c_A ATP-dependent RNA helic 93.6 0.14 4.7E-06 33.7 5.2 68 17-93 2-75 (76)
225 4e8u_A Putative uncharacterize 85.1 3.5 0.00012 31.6 7.3 57 16-75 13-81 (172)
226 3fry_A Probable copper-exporti 83.8 2.8 9.5E-05 26.5 5.6 55 15-76 6-60 (73)
227 2cu1_A Mitogen-activated prote 77.4 3.5 0.00012 28.4 4.4 53 20-80 21-74 (103)
228 3lpe_A Putative transcription 75.6 7.9 0.00027 26.2 5.9 35 41-80 39-73 (92)
229 3dxs_X Copper-transporting ATP 74.1 9.4 0.00032 23.7 5.8 55 16-76 4-62 (74)
230 2lfv_A Protein DAMX; cell divi 75.2 0.73 2.5E-05 32.5 0.0 68 14-86 24-93 (106)
231 2npt_B Mitogen-activated prote 72.6 7.7 0.00026 26.5 5.0 53 20-80 33-86 (100)
232 2lsl_A Telomerase associated p 74.7 0.77 2.6E-05 31.5 0.0 68 10-77 13-97 (137)
233 1vd2_A Protein kinase C, IOTA 71.1 7.3 0.00025 26.4 4.7 53 18-77 17-74 (89)
234 4a4j_A Pacszia, cation-transpo 68.4 7.5 0.00026 23.7 4.2 55 16-76 4-61 (69)
235 4bby_A Alkyldihydroxyacetoneph 68.4 3 0.0001 39.0 3.1 55 22-77 350-408 (658)
236 2xmw_A PACS-N, cation-transpor 68.3 16 0.00056 21.8 6.3 55 16-76 5-62 (71)
237 1yg0_A COP associated protein; 67.3 14 0.00047 21.7 5.3 55 17-77 4-61 (66)
238 2c60_A Human mitogen-activated 66.8 8.1 0.00028 26.7 4.2 53 20-80 44-97 (111)
239 2jrh_A Mitogen-activated prote 66.6 14 0.00047 24.9 5.2 65 20-93 17-82 (94)
240 1kvi_A Copper-transporting ATP 66.1 20 0.0007 22.1 6.2 57 15-77 9-69 (79)
241 2l3m_A Copper-ION-binding prot 65.3 19 0.00066 21.5 6.5 55 16-76 7-65 (71)
242 1q8l_A Copper-transporting ATP 63.6 25 0.00087 22.2 7.2 57 15-77 10-70 (84)
243 1cpz_A Protein (COPZ); copper 63.5 20 0.00069 21.1 7.4 55 16-76 2-60 (68)
244 2kt2_A Mercuric reductase; nme 63.0 21 0.00073 21.2 6.4 54 17-76 3-59 (69)
245 3j21_T 50S ribosomal protein L 61.5 14 0.00049 24.7 4.6 56 18-76 25-82 (86)
246 3cjk_B Copper-transporting ATP 61.4 25 0.00085 21.4 6.1 55 17-77 5-63 (75)
247 1osd_A MERP, hypothetical prot 61.3 24 0.00081 21.1 6.7 56 16-77 5-64 (72)
248 2ofg_X Zinc-transporting ATPas 60.5 37 0.0013 23.1 7.2 56 16-77 10-69 (111)
249 1x60_A Sporulation-specific N- 60.4 9.5 0.00033 24.6 3.6 65 13-82 7-71 (79)
250 3ts2_A Protein LIN-28 homolog 59.6 1.7 5.9E-05 32.5 -0.2 28 30-65 2-29 (148)
251 2exu_A Transcription initiatio 58.7 14 0.00048 28.9 4.9 26 56-81 148-173 (200)
252 3lo3_A Uncharacterized conserv 58.6 16 0.00054 24.8 4.6 43 32-75 26-71 (94)
253 3h7h_B Transcription elongatio 58.5 27 0.00093 24.3 5.9 35 41-80 40-74 (106)
254 2g9o_A Copper-transporting ATP 58.2 21 0.0007 23.3 5.2 56 16-77 5-64 (90)
255 1yjr_A Copper-transporting ATP 58.1 28 0.00096 21.0 7.7 56 15-76 5-64 (75)
256 1aw0_A Menkes copper-transport 57.5 18 0.00063 21.6 4.6 56 16-77 5-64 (72)
257 1mwy_A ZNTA; open-faced beta-s 56.2 31 0.0011 20.8 7.5 56 16-77 5-62 (73)
258 3swz_A Steroid 17-alpha-hydrox 56.0 17 0.00057 31.8 5.6 58 17-84 16-77 (494)
259 1fvq_A Copper-transporting ATP 55.8 27 0.00094 20.8 5.2 55 17-77 5-62 (72)
260 1wj6_A KIAA0049 protein, RSGI 54.9 20 0.00067 24.8 4.5 78 5-93 4-94 (101)
261 1xn9_A 30S ribosomal protein S 54.5 21 0.00072 24.7 4.7 48 25-73 28-80 (101)
262 2qif_A Copper chaperone COPZ; 53.8 30 0.001 20.0 6.3 55 16-76 4-62 (69)
263 3u5c_Y RP50, 40S ribosomal pro 53.5 62 0.0021 23.5 7.3 48 25-73 33-85 (135)
264 2v94_A RPS24, 30S ribosomal pr 53.2 27 0.00091 24.4 5.1 48 25-73 37-89 (107)
265 1opz_A Potential copper-transp 52.9 35 0.0012 20.4 7.1 57 15-77 7-67 (76)
266 3uzu_A Ribosomal RNA small sub 52.9 6.4 0.00022 32.5 2.2 32 16-47 115-146 (279)
267 3fut_A Dimethyladenosine trans 52.4 15 0.0005 30.2 4.3 29 15-44 110-138 (271)
268 2okq_A Hypothetical protein YB 52.1 34 0.0012 25.0 5.6 46 31-76 49-109 (141)
269 1y3j_A Copper-transporting ATP 52.1 23 0.00078 21.8 4.4 56 16-77 5-64 (77)
270 2w7a_A LINE-1 ORF1P; RNA-bindi 51.8 38 0.0013 23.3 5.6 75 16-90 4-98 (100)
271 1ywx_A 30S ribosomal protein S 51.4 24 0.00083 24.4 4.6 47 25-72 28-79 (102)
272 2xzm_P RPS24E; ribosome, trans 50.7 37 0.0013 25.2 5.7 48 25-73 31-83 (149)
273 3iwl_A Copper transport protei 50.7 35 0.0012 20.7 5.1 53 16-76 4-57 (68)
274 3ced_A Methionine import ATP-b 50.6 21 0.00071 24.3 4.2 63 17-79 22-87 (98)
275 2ko1_A CTR148A, GTP pyrophosph 50.6 46 0.0016 21.2 7.1 59 18-80 8-69 (88)
276 2ns6_A Mobilization protein A; 49.8 33 0.0011 26.4 5.7 50 15-67 70-127 (185)
277 3fjv_A Uncharacterized novel p 48.5 22 0.00077 27.6 4.4 56 28-90 66-128 (194)
278 2yko_A LINE-1 ORF1P; RNA-bindi 48.3 45 0.0015 26.7 6.3 78 15-92 52-149 (233)
279 1p6t_A Potential copper-transp 48.3 46 0.0016 23.5 6.2 25 18-42 78-102 (151)
280 3u5e_X 60S ribosomal protein L 47.8 21 0.00072 26.3 4.0 55 18-75 81-137 (142)
281 1vq8_S 50S ribosomal protein L 47.4 23 0.00079 23.6 3.8 55 18-75 24-80 (85)
282 2qrr_A Methionine import ATP-b 46.4 60 0.0021 21.9 6.1 62 17-78 25-88 (101)
283 3rz2_A Protein tyrosine phosph 46.1 29 0.001 26.3 4.9 78 14-92 35-125 (189)
284 2ldi_A Zinc-transporting ATPas 46.0 43 0.0015 19.5 6.0 55 16-76 5-63 (71)
285 4a17_R RPL23A, 60S ribosomal p 45.2 24 0.00081 26.3 3.9 55 18-75 89-145 (150)
286 2k2p_A Uncharacterized protein 44.8 12 0.00042 24.4 2.2 56 15-76 23-79 (85)
287 2ew9_A Copper-transporting ATP 44.8 38 0.0013 23.8 5.2 29 18-46 84-112 (149)
288 3pm9_A Putative oxidoreductase 44.6 21 0.00072 31.8 4.3 53 24-77 195-251 (476)
289 3iz5_X 60S ribosomal protein L 43.7 21 0.00073 26.6 3.5 55 18-75 91-147 (152)
290 3tbg_A Cytochrome P450 2D6; mo 43.6 14 0.0005 31.9 3.1 48 19-75 20-70 (479)
291 1qyr_A KSGA, high level kasuga 43.5 18 0.00063 29.1 3.5 24 16-39 91-114 (252)
292 2kkh_A Putative heavy metal tr 43.5 64 0.0022 20.8 7.5 56 16-77 18-77 (95)
293 2g1d_A 30S ribosomal protein S 43.5 23 0.0008 24.3 3.5 46 26-72 30-80 (98)
294 1jww_A Potential copper-transp 42.7 51 0.0017 20.0 5.0 55 16-76 5-63 (80)
295 3dhx_A Methionine import ATP-b 41.7 23 0.00077 24.5 3.3 55 26-80 32-88 (106)
296 2e7g_A Putative ribosome-bindi 41.7 49 0.0017 23.7 5.2 36 39-78 43-79 (129)
297 2qsw_A Methionine import ATP-b 41.7 38 0.0013 22.9 4.4 62 17-78 25-88 (100)
298 2cfx_A HTH-type transcriptiona 41.4 94 0.0032 22.1 8.2 53 22-79 72-124 (144)
299 2i9x_A Putative septation prot 41.1 28 0.00096 23.3 3.5 26 41-66 5-30 (87)
300 2crl_A Copper chaperone for su 40.9 47 0.0016 22.1 4.8 53 17-76 22-75 (98)
301 2fiu_A Conserved hypothetical 40.9 81 0.0028 21.3 6.1 18 58-75 55-72 (99)
302 1uta_A FTSN, MSGA, cell divisi 40.8 3.2 0.00011 27.3 -1.3 65 13-83 7-72 (81)
303 2kyz_A Heavy metal binding pro 40.7 19 0.00066 21.5 2.6 53 17-76 4-56 (67)
304 3ftd_A Dimethyladenosine trans 40.6 17 0.00059 29.2 2.9 25 16-40 96-120 (249)
305 2uuu_A Alkyldihydroxyacetoneph 40.5 15 0.00051 33.8 2.7 50 28-78 286-339 (584)
306 3pm0_A Cypib1, cytochrome P450 40.4 36 0.0012 29.6 5.2 49 18-75 18-68 (507)
307 3tqs_A Ribosomal RNA small sub 40.3 9.4 0.00032 31.0 1.2 29 17-45 98-126 (255)
308 3bgu_A Ferredoxin-like protein 40.2 56 0.0019 22.8 5.3 54 18-72 25-88 (116)
309 1x8d_A Hypothetical protein YI 40.0 55 0.0019 22.5 5.0 35 29-66 26-60 (104)
310 1i4w_A Mitochondrial replicati 39.4 23 0.00077 30.3 3.5 22 17-38 144-165 (353)
311 1wvf_A 4-cresol dehydrogenase 38.7 16 0.00056 32.8 2.7 43 31-74 217-261 (520)
312 1pqs_A Cell division control p 38.6 16 0.00053 24.0 1.9 52 19-77 4-64 (77)
313 3bsu_A Ribonuclease H1, RNAse 38.2 59 0.002 19.4 4.3 44 16-76 6-50 (53)
314 3p8b_B Transcription antitermi 38.2 55 0.0019 24.0 5.2 34 42-80 33-66 (152)
315 4hhu_A OR280; engineered prote 37.4 76 0.0026 22.5 5.4 73 16-93 43-130 (170)
316 3e6i_A CYPIIE1, P450-J, cytoch 36.1 28 0.00096 30.0 3.7 50 18-76 19-71 (476)
317 2cg4_A Regulatory protein ASNC 36.0 1.2E+02 0.0041 21.7 7.7 53 22-78 75-128 (152)
318 2j5a_A 30S ribosomal protein S 35.9 86 0.0029 21.7 5.6 55 17-73 12-81 (110)
319 2ia9_A Putative septation prot 35.3 38 0.0013 23.3 3.5 26 41-66 5-30 (100)
320 2rop_A Copper-transporting ATP 34.7 1.1E+02 0.0038 23.0 6.7 56 16-77 124-183 (202)
321 2e5p_A Protein PHF1, PHD finge 34.5 14 0.00047 23.4 1.0 21 39-67 27-47 (68)
322 2lea_A Serine/arginine-rich sp 34.3 8.4 0.00029 27.8 0.0 27 58-84 5-31 (135)
323 2i9z_A Putative septation prot 33.7 42 0.0014 23.3 3.5 26 41-66 5-30 (105)
324 2e1c_A Putative HTH-type trans 33.2 1.5E+02 0.0051 22.0 7.8 52 22-78 94-145 (171)
325 2f40_A Hypothetical protein PF 33.1 7.5 0.00026 26.0 -0.4 69 15-90 10-79 (96)
326 3rgo_A Protein-tyrosine phosph 33.1 65 0.0022 23.0 4.9 74 17-93 8-98 (157)
327 1j3m_A The conserved hypotheti 32.6 87 0.003 22.0 5.4 55 22-76 9-68 (129)
328 2nn4_A Hypothetical protein YQ 32.3 17 0.00057 23.5 1.1 18 28-45 4-21 (72)
329 2kgl_A Mesoderm development ca 32.3 1.4E+02 0.0047 23.1 6.5 54 16-77 76-136 (195)
330 1q4r_A Protein AT3G17210; cent 32.0 1.2E+02 0.0042 20.7 6.8 55 18-72 14-79 (112)
331 3pyf_A 4-diphosphocytidyl-2-C- 31.6 94 0.0032 25.6 6.1 36 58-93 259-294 (306)
332 2exr_A Cytokinin dehydrogenase 31.5 88 0.003 28.0 6.3 48 29-77 211-262 (524)
333 1q1o_A Cell division control p 31.4 38 0.0013 23.2 2.9 52 19-77 25-85 (98)
334 2qyc_A Ferredoxin-like protein 31.3 1.2E+02 0.004 20.3 6.3 54 18-72 8-71 (103)
335 1rlh_A Conserved hypothetical 30.9 1.3E+02 0.0043 22.6 5.8 30 11-40 22-51 (173)
336 2d8m_A DNA-repair protein XRCC 30.9 37 0.0013 24.1 3.1 29 13-42 23-51 (129)
337 2kkc_A Sequestosome-1; P62, PB 30.8 1.3E+02 0.0044 20.6 6.4 19 60-78 73-91 (102)
338 2ekm_A Hypothetical protein ST 30.6 1.7E+02 0.0057 21.8 7.2 31 11-41 11-41 (162)
339 2cyy_A Putative HTH-type trans 30.3 1.5E+02 0.0051 21.2 7.8 53 22-79 74-126 (151)
340 1wvq_A Hypothetical protein PA 30.3 1.7E+02 0.0058 21.8 7.2 30 11-40 14-43 (167)
341 2m0o_A PHD finger protein 1; t 30.2 18 0.0006 23.6 1.0 20 40-67 45-64 (79)
342 1i1g_A Transcriptional regulat 30.1 1.4E+02 0.0048 20.9 6.2 48 28-79 76-124 (141)
343 2kpo_A Rossmann 2X2 fold prote 28.3 36 0.0012 22.3 2.3 51 26-89 32-83 (110)
344 2ko4_A Mediator of RNA polymer 28.2 37 0.0013 22.3 2.3 19 20-38 29-48 (81)
345 1o57_A PUR operon repressor; p 28.0 1E+02 0.0035 25.3 5.7 41 32-77 47-87 (291)
346 4a8j_B Elongator complex prote 27.9 1.8E+02 0.0061 23.7 6.8 48 15-62 166-221 (270)
347 2xmm_A SSR2857 protein, ATX1; 27.8 68 0.0023 18.2 3.6 54 17-76 4-58 (64)
348 3emu_A Leucine rich repeat and 27.7 71 0.0024 23.4 4.3 16 18-33 17-32 (161)
349 3fle_A SE_1780 protein; struct 26.8 2.3E+02 0.008 22.3 7.6 34 15-48 7-44 (249)
350 2cs4_A Protein C12ORF2; GTP bi 26.7 30 0.001 23.6 1.7 22 20-41 21-43 (95)
351 3hhl_A RPA0582; alpha-beta-bar 26.6 88 0.003 22.8 4.5 19 57-75 88-106 (143)
352 3bb5_A Stress responsive alpha 26.3 1.7E+02 0.0057 20.4 7.7 56 18-73 24-90 (121)
353 2eqj_A Metal-response element- 26.0 27 0.00091 22.1 1.3 10 58-67 42-51 (66)
354 1vgg_A Conserved hypothetical 25.9 1.7E+02 0.0059 21.6 5.8 28 11-38 9-36 (161)
355 1e8g_A Vanillyl-alcohol oxidas 25.5 23 0.00079 32.2 1.3 43 32-75 250-294 (560)
356 2jsh_A Appetite-regulating hor 25.4 27 0.00093 17.7 1.0 22 22-43 2-23 (26)
357 2fdv_A Cytochrome P450 2A6; CY 25.3 51 0.0018 28.5 3.5 48 19-75 20-70 (476)
358 4ar0_A Type IV pilus biogenesi 25.2 37 0.0013 24.4 2.1 59 31-92 42-104 (128)
359 2bkf_A Zinc-finger protein NBR 25.1 1.2E+02 0.0041 20.2 4.4 59 24-91 25-84 (87)
360 3kiz_A Phosphoribosylformylgly 24.6 15 0.0005 32.1 -0.2 45 30-78 316-360 (394)
361 2od0_A Hypothetical protein VP 24.4 76 0.0026 21.6 3.6 22 27-48 4-25 (105)
362 3rfw_A Cell-binding factor 2; 24.3 1.1E+02 0.0039 24.0 5.2 42 25-78 89-134 (252)
363 2yh5_A DAPX protein, BAMC; lip 24.1 1.5E+02 0.005 21.1 5.2 48 14-69 12-60 (127)
364 1cc8_A Protein (metallochapero 23.0 1.3E+02 0.0044 18.0 5.9 54 16-76 7-62 (73)
365 3n9y_A Cholesterol SIDE-chain 22.9 1E+02 0.0036 26.4 5.1 39 29-76 35-73 (487)
366 2gk4_A Conserved hypothetical 22.7 1.7E+02 0.0057 23.3 5.8 60 17-76 20-80 (232)
367 1wha_A KIAA0147 protein, scrib 22.7 1.7E+02 0.0059 19.3 5.4 34 17-50 63-97 (105)
368 2e5q_A PHD finger protein 19; 22.6 13 0.00043 23.2 -0.7 10 58-67 36-45 (63)
369 2rf4_B DNA-directed RNA polyme 22.5 54 0.0018 21.8 2.3 29 11-39 15-43 (87)
370 3ld6_A Lanosterol 14-alpha dem 22.4 1.1E+02 0.0037 26.3 5.0 48 19-75 22-71 (461)
371 1tr0_A Stable protein 1; plant 22.3 1.8E+02 0.0063 19.5 6.7 55 18-72 12-79 (108)
372 4id3_A DNA repair protein REV1 22.1 85 0.0029 20.2 3.4 30 12-42 7-36 (92)
373 1cqm_A Ribosomal protein S6; a 22.1 87 0.003 21.2 3.5 52 24-75 11-76 (101)
374 1zpv_A ACT domain protein; str 21.9 1.1E+02 0.0038 19.5 4.0 35 16-50 6-41 (91)
375 3l3e_A DNA topoisomerase 2-bin 21.6 52 0.0018 22.3 2.3 31 11-42 14-44 (107)
376 1rxd_A Protein tyrosine phosph 21.5 1.4E+02 0.0047 21.2 4.8 78 15-93 15-105 (159)
377 3bde_A MLL5499 protein; stress 21.5 2.1E+02 0.0072 19.9 6.4 55 18-72 24-86 (120)
378 2e7k_A Maguk P55 subfamily mem 21.4 89 0.003 20.3 3.4 10 66-75 65-74 (91)
379 3ghf_A Septum site-determining 21.4 1.1E+02 0.0036 21.6 3.9 25 17-41 51-75 (120)
380 3mfb_A Uncharacterized protein 21.3 1.4E+02 0.0048 22.3 4.7 37 26-62 2-41 (157)
381 2fp3_A Caspase NC; apoptosis, 21.2 1.7E+02 0.006 24.3 5.9 28 14-41 61-98 (316)
382 2qlw_A RHAU; mutarotase, isome 21.1 30 0.001 25.6 0.9 48 16-66 43-100 (144)
383 3lp5_A Putative cell surface h 21.1 1.9E+02 0.0065 22.9 5.9 34 15-48 5-43 (250)
384 2cpq_A FragIle X mental retard 20.8 2E+02 0.0067 19.2 6.1 23 58-80 56-78 (91)
385 1ytr_A Bacteriocin plantaricin 20.6 56 0.0019 15.9 1.5 12 29-40 14-25 (26)
386 2dkr_A LIN-7 homolog B; LIN-7B 20.5 1.4E+02 0.0049 19.0 4.4 12 29-40 68-79 (93)
387 1po5_A Cytochrome P450 2B4; ox 20.4 73 0.0025 27.5 3.5 48 19-75 20-70 (476)
388 2ktr_A Sequestosome-1; autopha 20.2 2.3E+02 0.008 19.9 6.4 19 60-78 88-106 (117)
389 2zqe_A MUTS2 protein; alpha/be 20.1 1.7E+02 0.006 18.9 4.6 31 17-47 36-66 (83)
No 1
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.92 E-value=1.6e-23 Score=188.68 Aligned_cols=85 Identities=27% Similarity=0.523 Sum_probs=80.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025517 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
.+.++|||+|||+.||+++|+++|.+||.|+.|.|+.++.++.++|||||+|.+.++|++||++|||.+|+|..|.|+|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34579999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCCc
Q 025517 93 KYGPN 97 (251)
Q Consensus 93 ~~~~~ 97 (251)
.+...
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 86543
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.90 E-value=1.4e-23 Score=151.64 Aligned_cols=82 Identities=30% Similarity=0.503 Sum_probs=78.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025517 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
.++++|||+|||+.+|+++|+++|.+||+|..|.|+.++.+|.++|||||+|.+.++|++||+.|||..|+|+.|.|+||
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 025517 93 KY 94 (251)
Q Consensus 93 ~~ 94 (251)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 3
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.88 E-value=3.3e-22 Score=147.10 Aligned_cols=85 Identities=24% Similarity=0.214 Sum_probs=80.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEecc
Q 025517 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 93 (251)
+..+|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|+++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCch
Q 025517 94 YGPNA 98 (251)
Q Consensus 94 ~~~~~ 98 (251)
.....
T Consensus 85 ~~~~~ 89 (110)
T 3s8s_A 85 KGQQR 89 (110)
T ss_dssp TTHHH
T ss_pred CCcHH
Confidence 65443
No 4
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=4.8e-22 Score=144.71 Aligned_cols=91 Identities=24% Similarity=0.380 Sum_probs=83.9
Q ss_pred CCCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCce
Q 025517 7 SGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (251)
Q Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~ 86 (251)
..+......++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (105)
T 1x5u_A 7 GPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKP 86 (105)
T ss_dssp CCCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCB
T ss_pred CCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 34455667899999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred EEEEeccCCCc
Q 025517 87 ITVQFAKYGPN 97 (251)
Q Consensus 87 l~v~~a~~~~~ 97 (251)
|.|.|+.....
T Consensus 87 l~v~~a~~~~~ 97 (105)
T 1x5u_A 87 IRVNKASAHNK 97 (105)
T ss_dssp CEEEETTTTSC
T ss_pred EEEEECCCCCc
Confidence 99999986543
No 5
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.87 E-value=3.3e-22 Score=150.41 Aligned_cols=91 Identities=29% Similarity=0.531 Sum_probs=83.5
Q ss_pred CCCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCce
Q 025517 7 SGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (251)
Q Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~ 86 (251)
+.+....+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.
T Consensus 14 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 93 (126)
T 3ex7_B 14 PGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 93 (126)
T ss_dssp CCBCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 34455567889999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred EEEEeccCCCc
Q 025517 87 ITVQFAKYGPN 97 (251)
Q Consensus 87 l~v~~a~~~~~ 97 (251)
|.|+|+.....
T Consensus 94 l~v~~a~~~~~ 104 (126)
T 3ex7_B 94 ISVDWCFVRGP 104 (126)
T ss_dssp CEEEESEESSS
T ss_pred EEEEEecCCCC
Confidence 99999976543
No 6
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.87 E-value=4.8e-22 Score=139.65 Aligned_cols=83 Identities=23% Similarity=0.485 Sum_probs=77.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025517 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
.+.++|||+|||..+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|+|+.|.|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCC
Q 025517 93 KYG 95 (251)
Q Consensus 93 ~~~ 95 (251)
+.+
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 7
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=9.5e-22 Score=141.63 Aligned_cols=87 Identities=30% Similarity=0.536 Sum_probs=81.5
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEE
Q 025517 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 90 (251)
...+.++|||+|||+.+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|+.||+.||+..|.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34568899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eccCCCc
Q 025517 91 FAKYGPN 97 (251)
Q Consensus 91 ~a~~~~~ 97 (251)
|++....
T Consensus 84 ~a~~~~~ 90 (99)
T 1whw_A 84 PSTIKKE 90 (99)
T ss_dssp ECCCCST
T ss_pred EcCCCcc
Confidence 9987654
No 8
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.87 E-value=1.9e-21 Score=143.91 Aligned_cols=90 Identities=26% Similarity=0.527 Sum_probs=83.4
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEE
Q 025517 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (251)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~ 88 (251)
..+..+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34556789999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEeccCCCch
Q 025517 89 VQFAKYGPNA 98 (251)
Q Consensus 89 v~~a~~~~~~ 98 (251)
|.|++.....
T Consensus 89 V~~a~~~~~~ 98 (115)
T 2dgo_A 89 TNWATRKPPA 98 (115)
T ss_dssp EEESSCCCCC
T ss_pred EEEccCCCCC
Confidence 9999876543
No 9
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=5.4e-22 Score=144.02 Aligned_cols=89 Identities=48% Similarity=0.809 Sum_probs=83.0
Q ss_pred CCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceE
Q 025517 8 GPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (251)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l 87 (251)
.++...+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2dnm_A 6 SGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL 85 (103)
T ss_dssp CSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 34566778999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred EEEeccCCC
Q 025517 88 TVQFAKYGP 96 (251)
Q Consensus 88 ~v~~a~~~~ 96 (251)
.|+|++...
T Consensus 86 ~V~~a~~~~ 94 (103)
T 2dnm_A 86 RVQVARYGR 94 (103)
T ss_dssp EEEECSSCC
T ss_pred EEEECCcCC
Confidence 999998653
No 10
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.87 E-value=8.6e-22 Score=137.12 Aligned_cols=82 Identities=27% Similarity=0.516 Sum_probs=78.2
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccC
Q 025517 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 94 (251)
+++|||+|||+.+++++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|+|+.|.|.|+++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 47899999999999999999999999999999999988999999999999999999999999999999999999999986
Q ss_pred CC
Q 025517 95 GP 96 (251)
Q Consensus 95 ~~ 96 (251)
.+
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 11
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1e-21 Score=140.31 Aligned_cols=87 Identities=36% Similarity=0.541 Sum_probs=81.1
Q ss_pred CCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceE
Q 025517 8 GPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (251)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l 87 (251)
......+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 8 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34455667899999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred EEEeccC
Q 025517 88 TVQFAKY 94 (251)
Q Consensus 88 ~v~~a~~ 94 (251)
.|+|++.
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9999874
No 12
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.87 E-value=2.5e-22 Score=143.82 Aligned_cols=85 Identities=28% Similarity=0.466 Sum_probs=77.6
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCC--eeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCC----ccC
Q 025517 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGK--VVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR----VVD 83 (251)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~--i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~----~i~ 83 (251)
.....-.||||+|||+.+|+++|.++|.+||. |..|.|+.++.+|.++|||||+|.+.++|++||+.|||. .|+
T Consensus 4 ~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~ 83 (95)
T 2lkz_A 4 HHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID 83 (95)
T ss_dssp CSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET
T ss_pred ccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceEC
Confidence 34455778999999999999999999999995 678999999999999999999999999999999999997 489
Q ss_pred CceEEEEeccC
Q 025517 84 GREITVQFAKY 94 (251)
Q Consensus 84 g~~l~v~~a~~ 94 (251)
|++|.|+||+.
T Consensus 84 Gr~i~V~~Aks 94 (95)
T 2lkz_A 84 GKTIGVDFAKS 94 (95)
T ss_dssp TEEEEEEECCC
T ss_pred CEEEEEEEccC
Confidence 99999999974
No 13
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=139.90 Aligned_cols=84 Identities=33% Similarity=0.514 Sum_probs=79.1
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEE
Q 025517 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (251)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v 89 (251)
....+.++|||+|||+.+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|+.||+.||+..|.|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34456789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred Eecc
Q 025517 90 QFAK 93 (251)
Q Consensus 90 ~~a~ 93 (251)
+||+
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 14
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=1.9e-21 Score=140.11 Aligned_cols=87 Identities=21% Similarity=0.362 Sum_probs=80.8
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEE
Q 025517 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (251)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v 89 (251)
++..+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+ ||+..|+|+.|.|
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 345668899999999999999999999999999999999998889999999999999999999999 9999999999999
Q ss_pred EeccCCCc
Q 025517 90 QFAKYGPN 97 (251)
Q Consensus 90 ~~a~~~~~ 97 (251)
.|+++...
T Consensus 84 ~~a~~~~~ 91 (99)
T 2dgs_A 84 KRAEPRDS 91 (99)
T ss_dssp EECCCCCC
T ss_pred EECCCCcc
Confidence 99986543
No 15
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=1.7e-21 Score=143.10 Aligned_cols=91 Identities=23% Similarity=0.425 Sum_probs=83.8
Q ss_pred CCCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhC------CC
Q 025517 7 SGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD------GR 80 (251)
Q Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~------g~ 80 (251)
..+....+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.|| +.
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~ 86 (111)
T 1x4h_A 7 GLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGL 86 (111)
T ss_dssp CCCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCE
T ss_pred CCCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCc
Confidence 345556778899999999999999999999999999999999998899999999999999999999999999 99
Q ss_pred ccCCceEEEEeccCCCc
Q 025517 81 VVDGREITVQFAKYGPN 97 (251)
Q Consensus 81 ~i~g~~l~v~~a~~~~~ 97 (251)
.|+|+.|.|.|+.+...
T Consensus 87 ~~~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 87 KLDGRQLKVDLAVTRDE 103 (111)
T ss_dssp ESSSCEEEEECCCCCCC
T ss_pred EEcCEEEEEEECCCCcc
Confidence 99999999999986543
No 16
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=2.9e-21 Score=141.51 Aligned_cols=82 Identities=23% Similarity=0.292 Sum_probs=75.9
Q ss_pred CCCCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCC-
Q 025517 6 KSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG- 84 (251)
Q Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g- 84 (251)
..++++....++|||+|||+.+++++|+++|.+||+|+.|.|+.+ |||||+|.+.++|++||+.||+..|.|
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 78 (108)
T 1x4c_A 6 SGGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSH 78 (108)
T ss_dssp CSSCCCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECT
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCC
Confidence 345666778899999999999999999999999999999999875 899999999999999999999999999
Q ss_pred ----ceEEEEeccC
Q 025517 85 ----REITVQFAKY 94 (251)
Q Consensus 85 ----~~l~v~~a~~ 94 (251)
+.|.|++|++
T Consensus 79 ~~~~~~i~V~~a~~ 92 (108)
T 1x4c_A 79 EGETAYIRVKVDGP 92 (108)
T ss_dssp TSCEEEEEEEESSC
T ss_pred cCcceEEEEEeCCC
Confidence 9999999975
No 17
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.3e-21 Score=141.94 Aligned_cols=87 Identities=29% Similarity=0.538 Sum_probs=81.6
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEE
Q 025517 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 90 (251)
...+.++|||+|||+.+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45668999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eccCCCc
Q 025517 91 FAKYGPN 97 (251)
Q Consensus 91 ~a~~~~~ 97 (251)
|+++...
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9986543
No 18
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.5e-21 Score=142.71 Aligned_cols=90 Identities=28% Similarity=0.497 Sum_probs=82.2
Q ss_pred CCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceE
Q 025517 8 GPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (251)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l 87 (251)
.+....+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.|++ .|.|+.|
T Consensus 10 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l 88 (116)
T 2cqd_A 10 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKA 88 (116)
T ss_dssp CCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEEC
T ss_pred CCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEE
Confidence 345556789999999999999999999999999999999999988999999999999999999999999998 8999999
Q ss_pred EEEeccCCCch
Q 025517 88 TVQFAKYGPNA 98 (251)
Q Consensus 88 ~v~~a~~~~~~ 98 (251)
.|+|+......
T Consensus 89 ~V~~a~~~~~~ 99 (116)
T 2cqd_A 89 NVNLAYLGAKP 99 (116)
T ss_dssp EEEESTTTCCC
T ss_pred EEEEcccCCCc
Confidence 99999765433
No 19
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.86 E-value=1.8e-22 Score=143.52 Aligned_cols=84 Identities=20% Similarity=0.408 Sum_probs=77.1
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhC-CCccCCceEEEEec
Q 025517 15 TYSLLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD-GRVVDGREITVQFA 92 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~-g~~i~g~~l~v~~a 92 (251)
+.+|||+|||+.+|+++|.++|.+|| +|..|.|+.++.+|.++|||||+|.+.++|++||+.|+ +..|+|++|.|+||
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 89999999999999999999999999999999999874 56799999999999
Q ss_pred cCCCch
Q 025517 93 KYGPNA 98 (251)
Q Consensus 93 ~~~~~~ 98 (251)
.+.+..
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 876543
No 20
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=9.2e-22 Score=142.47 Aligned_cols=88 Identities=35% Similarity=0.594 Sum_probs=81.8
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEE
Q 025517 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (251)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v 89 (251)
....+.++|||+|||+.+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|+.||+.||+..|+|+.|.|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34556889999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EeccCCCc
Q 025517 90 QFAKYGPN 97 (251)
Q Consensus 90 ~~a~~~~~ 97 (251)
+|++....
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x5s_A 87 DQAGKSSD 94 (102)
T ss_dssp EEEECCCC
T ss_pred EECCCCCC
Confidence 99986543
No 21
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.1e-21 Score=143.05 Aligned_cols=88 Identities=28% Similarity=0.526 Sum_probs=81.5
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEE
Q 025517 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (251)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~ 88 (251)
+....+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|+.||+.|||..|+|+.|.
T Consensus 17 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 96 (106)
T 1p27_B 17 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 96 (106)
T ss_dssp BCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 33445678999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEeccCCC
Q 025517 89 VQFAKYGP 96 (251)
Q Consensus 89 v~~a~~~~ 96 (251)
|.|+.+.+
T Consensus 97 V~~a~~~~ 104 (106)
T 1p27_B 97 VDWCFVRG 104 (106)
T ss_dssp EEESEESS
T ss_pred EEeecCCC
Confidence 99997654
No 22
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=1.7e-21 Score=139.12 Aligned_cols=84 Identities=27% Similarity=0.525 Sum_probs=79.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEecc
Q 025517 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 93 (251)
+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.||+..|.|+.|.|+|++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 57899999999999999999999999999999999998889999999999999999999999999999999999999997
Q ss_pred CCCc
Q 025517 94 YGPN 97 (251)
Q Consensus 94 ~~~~ 97 (251)
....
T Consensus 84 ~~~~ 87 (95)
T 2dnz_A 84 ERLD 87 (95)
T ss_dssp CCCC
T ss_pred cccC
Confidence 6543
No 23
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.86 E-value=2.1e-21 Score=144.14 Aligned_cols=84 Identities=29% Similarity=0.497 Sum_probs=79.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEe
Q 025517 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 91 (251)
..+..+|||+|||+.+++++|+++|.+||.|..|.|+.+. ++..+|||||+|.+.++|++||+.|||..|+|+.|.|+|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999999987 899999999999999999999999999999999999999
Q ss_pred ccCCC
Q 025517 92 AKYGP 96 (251)
Q Consensus 92 a~~~~ 96 (251)
++...
T Consensus 83 a~~~~ 87 (116)
T 2fy1_A 83 AKKPS 87 (116)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 98654
No 24
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=2.6e-21 Score=141.24 Aligned_cols=90 Identities=29% Similarity=0.535 Sum_probs=82.7
Q ss_pred CCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccC-CCCCCcceEEEEEEecHHHHHHHHhhh-CCCccCCc
Q 025517 8 GPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRD-RRTGDSRGFAFVRYKYADEAQKAVDRL-DGRVVDGR 85 (251)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~Ai~~l-~g~~i~g~ 85 (251)
.++...+.++|||+|||+.+++++|+++|.+||.|..|.|+.+ ..++.++|||||+|.+.++|++||+.| |+..|.|+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 8 QVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp SSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred ccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 3445567889999999999999999999999999999999988 778999999999999999999999999 99999999
Q ss_pred eEEEEeccCCCc
Q 025517 86 EITVQFAKYGPN 97 (251)
Q Consensus 86 ~l~v~~a~~~~~ 97 (251)
.|.|+|++....
T Consensus 88 ~l~v~~a~~~~~ 99 (107)
T 2cph_A 88 RLVLEWADSEVT 99 (107)
T ss_dssp BCEEEECCCCCC
T ss_pred EEEEEeCCCCCC
Confidence 999999987544
No 25
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1e-21 Score=142.18 Aligned_cols=87 Identities=30% Similarity=0.421 Sum_probs=81.1
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEE
Q 025517 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 90 (251)
...+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++..+|||||+|.+.++|+.||+.||+..|+|+.|.|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eccCCCc
Q 025517 91 FAKYGPN 97 (251)
Q Consensus 91 ~a~~~~~ 97 (251)
|+++...
T Consensus 88 ~a~~~~~ 94 (102)
T 2cqb_A 88 LAKPMRI 94 (102)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9986543
No 26
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.86 E-value=2e-22 Score=149.47 Aligned_cols=78 Identities=24% Similarity=0.330 Sum_probs=63.3
Q ss_pred CCCCCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCC
Q 025517 5 GKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG 84 (251)
Q Consensus 5 ~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g 84 (251)
+..+|++....++|||+|||+.+++++|+++|.+||+|+.|.|+.+ |||||+|.+.++|++||+.||+.+|+|
T Consensus 6 ~r~gpp~~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g 78 (115)
T 3beg_B 6 GRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRS 78 (115)
T ss_dssp -----------CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCC
T ss_pred CCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3456666678899999999999999999999999999999999765 899999999999999999999999999
Q ss_pred ceEEE
Q 025517 85 REITV 89 (251)
Q Consensus 85 ~~l~v 89 (251)
+.|.|
T Consensus 79 r~~~~ 83 (115)
T 3beg_B 79 HEGET 83 (115)
T ss_dssp TTSCC
T ss_pred cEeee
Confidence 98443
No 27
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.7e-21 Score=143.77 Aligned_cols=87 Identities=30% Similarity=0.445 Sum_probs=81.2
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCee--------EEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCcc
Q 025517 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVV--------DVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV 82 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i 82 (251)
...+.++|||+|||+.+++++|+++|.+||.|. .|.|+.++.++.++|||||+|.+.++|++||+.||+..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 456688999999999999999999999999998 699999988999999999999999999999999999999
Q ss_pred CCceEEEEeccCCCc
Q 025517 83 DGREITVQFAKYGPN 97 (251)
Q Consensus 83 ~g~~l~v~~a~~~~~ 97 (251)
.|+.|.|.|++....
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999986554
No 28
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=4.4e-21 Score=138.43 Aligned_cols=85 Identities=26% Similarity=0.494 Sum_probs=79.6
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEE
Q 025517 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 90 (251)
...+.++|||+|||+.+++++|.++|.+||.|..|.|+.+. ++.++|||||+|.+.++|++||+.||+..|+|+.|.|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred eccCCC
Q 025517 91 FAKYGP 96 (251)
Q Consensus 91 ~a~~~~ 96 (251)
|+++.+
T Consensus 92 ~a~~~~ 97 (100)
T 2do4_A 92 ISNSGP 97 (100)
T ss_dssp ECCCCS
T ss_pred ECCCCC
Confidence 998654
No 29
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.86 E-value=2.3e-21 Score=139.66 Aligned_cols=85 Identities=26% Similarity=0.407 Sum_probs=79.8
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeE--------EEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCC
Q 025517 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVD--------VFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR 80 (251)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (251)
+++....++|||+|||+.+++++|+++|.+||.|.. |.|+.++.+|..+|||||+|.+.++|+.||+.|||.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 445566899999999999999999999999999999 999999889999999999999999999999999999
Q ss_pred ccCCceEEEEecc
Q 025517 81 VVDGREITVQFAK 93 (251)
Q Consensus 81 ~i~g~~l~v~~a~ 93 (251)
.|.|+.|.|++|+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999984
No 30
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.86 E-value=1.5e-21 Score=136.47 Aligned_cols=81 Identities=32% Similarity=0.509 Sum_probs=77.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025517 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
.+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++..+|||||+|.+.++|+.||+.|||..|+|+.|.|+||
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred c
Q 025517 93 K 93 (251)
Q Consensus 93 ~ 93 (251)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 31
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.86 E-value=2.1e-21 Score=141.83 Aligned_cols=85 Identities=29% Similarity=0.499 Sum_probs=79.3
Q ss_pred CCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceE
Q 025517 8 GPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (251)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l 87 (251)
++++..+.++|||+|||+.+++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|++||+.||+..|.|+.|
T Consensus 22 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 100 (107)
T 3ulh_A 22 GGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPM 100 (107)
T ss_dssp --CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 45566778999999999999999999999999999999999987 89999999999999999999999999999999999
Q ss_pred EEEecc
Q 025517 88 TVQFAK 93 (251)
Q Consensus 88 ~v~~a~ 93 (251)
.|+|+.
T Consensus 101 ~V~~a~ 106 (107)
T 3ulh_A 101 NIQLVT 106 (107)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999985
No 32
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.86 E-value=1.8e-21 Score=142.89 Aligned_cols=90 Identities=29% Similarity=0.498 Sum_probs=82.7
Q ss_pred CCCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCce
Q 025517 7 SGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (251)
Q Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~ 86 (251)
..+....+.++|||+|||+.+++++|+++|.+||.|..|.|+.+..+|.++|||||+|.+.++|+.||..|||..|+|+.
T Consensus 18 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 97 (110)
T 1oo0_B 18 PGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT 97 (110)
T ss_dssp CCBCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 34444566789999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred EEEEeccCCC
Q 025517 87 ITVQFAKYGP 96 (251)
Q Consensus 87 l~v~~a~~~~ 96 (251)
|.|.|+.+.+
T Consensus 98 l~V~~a~~~~ 107 (110)
T 1oo0_B 98 IQVDWCFVKG 107 (110)
T ss_dssp CEEEESEESS
T ss_pred EEEEEcccCC
Confidence 9999997654
No 33
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.86 E-value=1.9e-21 Score=143.92 Aligned_cols=85 Identities=24% Similarity=0.383 Sum_probs=80.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEe
Q 025517 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 91 (251)
..+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|+|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 025517 92 AKYGP 96 (251)
Q Consensus 92 a~~~~ 96 (251)
+++..
T Consensus 102 a~~~~ 106 (115)
T 2cpz_A 102 KRSKN 106 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 98654
No 34
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.86 E-value=3.9e-21 Score=137.73 Aligned_cols=84 Identities=20% Similarity=0.420 Sum_probs=79.7
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccC
Q 025517 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 94 (251)
+.+|||+|||..+++++|.++|.+||.|..|.|+.++.+|.++|||||+|.+.++|+.||+.|||..|+|+.|.|.|+.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57899999999999999999999999999999999988899999999999999999999999999999999999999987
Q ss_pred CCch
Q 025517 95 GPNA 98 (251)
Q Consensus 95 ~~~~ 98 (251)
....
T Consensus 82 ~~~~ 85 (96)
T 2x1f_A 82 SDIS 85 (96)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 6544
No 35
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.85 E-value=5.6e-22 Score=140.54 Aligned_cols=82 Identities=26% Similarity=0.377 Sum_probs=72.7
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCC--CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEecc
Q 025517 16 YSLLVLNITFRTTADDLFPLFEKYG--KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 93 (251)
++|||+|||+.+++++|+++|.+|| .|..|.|+.++.+|.++|||||+|.+.++|++||+.|||..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999998899999999999999999999999999999999999999998
Q ss_pred CCCc
Q 025517 94 YGPN 97 (251)
Q Consensus 94 ~~~~ 97 (251)
+.+.
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6543
No 36
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=7.2e-21 Score=138.06 Aligned_cols=86 Identities=24% Similarity=0.442 Sum_probs=79.6
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEE
Q 025517 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (251)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~ 88 (251)
+.+..+.++|||+|||+.+++++|+++|.+|| |..|.|+.++.++.++|||||+|.+.++|++|| .||+..|.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 86 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLR 86 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEE
Confidence 44556688999999999999999999999997 999999999889999999999999999999999 7999999999999
Q ss_pred EEeccCCC
Q 025517 89 VQFAKYGP 96 (251)
Q Consensus 89 v~~a~~~~ 96 (251)
|.|+.+..
T Consensus 87 V~~a~~~~ 94 (103)
T 2dng_A 87 VDIAEGRK 94 (103)
T ss_dssp EEECCCCC
T ss_pred EEEecCCC
Confidence 99998654
No 37
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.1e-21 Score=138.91 Aligned_cols=83 Identities=25% Similarity=0.481 Sum_probs=78.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCeeEE-EEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025517 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDV-FIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v-~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
+.++|||+|||+.+++++|.++|.+||.|..| .|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|.|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 47899999999999999999999999999999 99998889999999999999999999999999999999999999999
Q ss_pred cCCC
Q 025517 93 KYGP 96 (251)
Q Consensus 93 ~~~~ 96 (251)
.+..
T Consensus 84 ~~~~ 87 (96)
T 1x5t_A 84 FKKD 87 (96)
T ss_dssp CCCC
T ss_pred cccC
Confidence 7654
No 38
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=5e-21 Score=139.17 Aligned_cols=87 Identities=17% Similarity=0.364 Sum_probs=79.8
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCC-CCcceEEEEEEecHHHHHHHHhhhCCCccCCceE
Q 025517 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRT-GDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (251)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~-g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l 87 (251)
+.+..+.++|||+|||+.+++++|+++|.+|| |..|.|+.++.+ +.++|||||+|.+.++|++|| .||+..|+|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 86 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRI 86 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEE
Confidence 34456679999999999999999999999999 999999998877 899999999999999999999 899999999999
Q ss_pred EEEeccCCCc
Q 025517 88 TVQFAKYGPN 97 (251)
Q Consensus 88 ~v~~a~~~~~ 97 (251)
.|+|+.+...
T Consensus 87 ~V~~a~~~~~ 96 (104)
T 1wi8_A 87 RVDVADQAQD 96 (104)
T ss_dssp EEEECCCCCC
T ss_pred EEEEccCCCC
Confidence 9999986543
No 39
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.85 E-value=9.5e-21 Score=137.81 Aligned_cols=85 Identities=26% Similarity=0.418 Sum_probs=78.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCC---ceEE
Q 025517 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG---REIT 88 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g---~~l~ 88 (251)
..+.++|||+|||+.+++++|.++|.+||.|..|.|+.++ ++.++|||||+|.+.++|++||+.||+..|.| +.|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3457899999999999999999999999999999999887 78999999999999999999999999999988 9999
Q ss_pred EEeccCCCc
Q 025517 89 VQFAKYGPN 97 (251)
Q Consensus 89 v~~a~~~~~ 97 (251)
|.|++....
T Consensus 91 V~~a~~~~~ 99 (105)
T 2dnh_A 91 VKFADTDKE 99 (105)
T ss_dssp EEESCSSCC
T ss_pred EEECccCcc
Confidence 999986543
No 40
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.85 E-value=3.7e-21 Score=140.26 Aligned_cols=88 Identities=31% Similarity=0.406 Sum_probs=81.3
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCcc---CCc
Q 025517 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV---DGR 85 (251)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i---~g~ 85 (251)
+....+.++|||+|||+.+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+.||+..| .|+
T Consensus 7 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 7 GMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp SCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 34456688999999999999999999999999999999999988899999999999999999999999999987 899
Q ss_pred eEEEEeccCCC
Q 025517 86 EITVQFAKYGP 96 (251)
Q Consensus 86 ~l~v~~a~~~~ 96 (251)
.|.|.|+....
T Consensus 87 ~l~v~~a~~~~ 97 (106)
T 2dgp_A 87 PIQVKPADSES 97 (106)
T ss_dssp CCEEEECCCCS
T ss_pred eEEEEECCccc
Confidence 99999998654
No 41
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=6.9e-21 Score=138.13 Aligned_cols=85 Identities=26% Similarity=0.429 Sum_probs=79.0
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEE
Q 025517 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 90 (251)
...+.++|||+|||+.+++++|+++|.+||.|..|.|+.+ ++..+|||||+|.+.++|++||+.||+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3456889999999999999999999999999999999887 78899999999999999999999999999999999999
Q ss_pred eccCCCc
Q 025517 91 FAKYGPN 97 (251)
Q Consensus 91 ~a~~~~~ 97 (251)
|++....
T Consensus 89 ~a~~~~~ 95 (103)
T 2d9p_A 89 LAQRKEE 95 (103)
T ss_dssp ECSSCCC
T ss_pred Eeccccc
Confidence 9986543
No 42
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.85 E-value=3.9e-21 Score=140.91 Aligned_cols=87 Identities=26% Similarity=0.469 Sum_probs=81.2
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEE
Q 025517 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (251)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~ 88 (251)
+....+.++|||+|||..+++++|.++|.+||.|..|.|+.++.+|.++|||||+|.+.++|+.||+.|||..|+|+.|.
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34456678999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEeccCC
Q 025517 89 VQFAKYG 95 (251)
Q Consensus 89 v~~a~~~ 95 (251)
|.++++.
T Consensus 100 V~~a~~k 106 (108)
T 2jrs_A 100 VGHVTER 106 (108)
T ss_dssp EECSCSS
T ss_pred EEEcccC
Confidence 9999764
No 43
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.85 E-value=3.1e-21 Score=145.92 Aligned_cols=87 Identities=37% Similarity=0.579 Sum_probs=81.1
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEE
Q 025517 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (251)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v 89 (251)
....+.++|||+|||+.+++++|+++|.+||+|..|.|+.++.++..+|||||+|.+.++|++||+.|||..|+|+.|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EeccCCC
Q 025517 90 QFAKYGP 96 (251)
Q Consensus 90 ~~a~~~~ 96 (251)
+|+.+..
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9997643
No 44
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.85 E-value=4.5e-21 Score=136.15 Aligned_cols=86 Identities=24% Similarity=0.404 Sum_probs=79.0
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEE
Q 025517 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (251)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~ 88 (251)
+.+..+.++|||+|||+.+++++|+++|.+||.|..|.|+.+ ++..+|||||+|.+.++|+.||+.||+..|+|+.|.
T Consensus 2 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 79 (92)
T 2dgv_A 2 SSGSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREID 79 (92)
T ss_dssp CCSSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCC
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 445567889999999999999999999999999999999874 788999999999999999999999999999999999
Q ss_pred EEeccCCC
Q 025517 89 VQFAKYGP 96 (251)
Q Consensus 89 v~~a~~~~ 96 (251)
|.|+++..
T Consensus 80 v~~a~~~~ 87 (92)
T 2dgv_A 80 VRIDRNAS 87 (92)
T ss_dssp CEECSCCS
T ss_pred EEEcCCCC
Confidence 99998654
No 45
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.85 E-value=3.9e-21 Score=151.36 Aligned_cols=90 Identities=29% Similarity=0.493 Sum_probs=81.6
Q ss_pred CCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceE
Q 025517 8 GPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (251)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l 87 (251)
++....+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|+.||+.|||..|.|+.|
T Consensus 65 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 144 (165)
T 1rk8_A 65 GPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 144 (165)
T ss_dssp -CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34445667899999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EEEeccCCCc
Q 025517 88 TVQFAKYGPN 97 (251)
Q Consensus 88 ~v~~a~~~~~ 97 (251)
.|.|+.....
T Consensus 145 ~V~~a~~~~~ 154 (165)
T 1rk8_A 145 QVDWCFVKGP 154 (165)
T ss_dssp EEEESEECC-
T ss_pred EEEEecCCCC
Confidence 9999986544
No 46
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.85 E-value=3.7e-21 Score=137.39 Aligned_cols=85 Identities=28% Similarity=0.439 Sum_probs=77.9
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEE
Q 025517 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (251)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~ 88 (251)
+....+.++|||+|||+.+++++|+++|.+||+|..|.|+.++. +.++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 10 ~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (95)
T 2ywk_A 10 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPIN 88 (95)
T ss_dssp --CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEE
Confidence 34456678999999999999999999999999999999998874 88999999999999999999999999999999999
Q ss_pred EEeccC
Q 025517 89 VQFAKY 94 (251)
Q Consensus 89 v~~a~~ 94 (251)
|.|++.
T Consensus 89 V~~a~~ 94 (95)
T 2ywk_A 89 VSGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EEEcCC
Confidence 999864
No 47
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.6e-21 Score=139.08 Aligned_cols=85 Identities=27% Similarity=0.414 Sum_probs=76.6
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEE
Q 025517 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (251)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~ 88 (251)
++...+.++|||+|||+.+++++|+++|.+||.|..|.|+. ++.++|||||+|.+.++|++||+.||+..|+|+.|.
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLR 92 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 44456678999999999999999999999999999999965 345789999999999999999999999999999999
Q ss_pred EEeccCCC
Q 025517 89 VQFAKYGP 96 (251)
Q Consensus 89 v~~a~~~~ 96 (251)
|+|++...
T Consensus 93 V~~a~~~~ 100 (109)
T 1x4a_A 93 VEFPRSGR 100 (109)
T ss_dssp EECCCCCC
T ss_pred EEEcccCC
Confidence 99998654
No 48
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=4.4e-21 Score=138.09 Aligned_cols=85 Identities=24% Similarity=0.384 Sum_probs=79.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCee-EEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCce----
Q 025517 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVV-DVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE---- 86 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~---- 86 (251)
..+..+|||+|||+.+++++|+++|.+||.|. .|.|+.++.++.++|||||+|.+.++|++||+.||+..|.|..
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 44678999999999999999999999999999 9999999889999999999999999999999999999999999
Q ss_pred EEEEeccCCC
Q 025517 87 ITVQFAKYGP 96 (251)
Q Consensus 87 l~v~~a~~~~ 96 (251)
|.|+||++..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999997643
No 49
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=2.1e-20 Score=138.00 Aligned_cols=85 Identities=25% Similarity=0.363 Sum_probs=79.0
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEE
Q 025517 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (251)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v 89 (251)
......++|||+|||+.+++++|+++|.+||.|..|.|+.++ ++.++|||||+|.+.++|+.||+.||+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 445667899999999999999999999999999999999886 6889999999999999999999999999999999999
Q ss_pred EeccCC
Q 025517 90 QFAKYG 95 (251)
Q Consensus 90 ~~a~~~ 95 (251)
+|++..
T Consensus 89 ~~a~~~ 94 (114)
T 2do0_A 89 KMDERA 94 (114)
T ss_dssp EECSCC
T ss_pred EEcccC
Confidence 999754
No 50
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.85 E-value=5.9e-21 Score=141.87 Aligned_cols=83 Identities=27% Similarity=0.424 Sum_probs=77.9
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEE
Q 025517 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 90 (251)
+..+.++|||+|||+.+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|+|+.|.|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34557899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred ecc
Q 025517 91 FAK 93 (251)
Q Consensus 91 ~a~ 93 (251)
|++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 984
No 51
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.6e-20 Score=136.13 Aligned_cols=87 Identities=36% Similarity=0.550 Sum_probs=78.7
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEE
Q 025517 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (251)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~ 88 (251)
+....+.++|||+|||+.+++++|+++|.+||.|..|.|+.+.. .++|||||+|.+.++|+.||+.||+..|+|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34456789999999999999999999999999999999998753 3789999999999999999999999999999999
Q ss_pred EEeccCCCc
Q 025517 89 VQFAKYGPN 97 (251)
Q Consensus 89 v~~a~~~~~ 97 (251)
|.|+.+...
T Consensus 87 v~~a~~~~~ 95 (103)
T 2cq3_A 87 VNNATARVM 95 (103)
T ss_dssp EEECCSSCC
T ss_pred EEEcccCCC
Confidence 999986544
No 52
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=6.8e-21 Score=138.34 Aligned_cols=87 Identities=24% Similarity=0.366 Sum_probs=80.5
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhc-CCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCc-cCCceE
Q 025517 10 PDIRDTYSLLVLNITFRTTADDLFPLFEK-YGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRV-VDGREI 87 (251)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~-i~g~~l 87 (251)
++..+.++|||+|||+.+++++|.++|.+ ||.|..|.|+.+. ++.++|||||+|.+.++|+.||+.||+.. |+|+.|
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 4 GSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp CCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 34456789999999999999999999999 9999999999998 89999999999999999999999999999 999999
Q ss_pred EEEeccCCCc
Q 025517 88 TVQFAKYGPN 97 (251)
Q Consensus 88 ~v~~a~~~~~ 97 (251)
.|.|+.....
T Consensus 83 ~v~~a~~~~~ 92 (104)
T 2dhg_A 83 RLSVAIPKAS 92 (104)
T ss_dssp CCCBCCCCCS
T ss_pred EEEEccCCCc
Confidence 9999976543
No 53
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=4e-21 Score=138.06 Aligned_cols=84 Identities=32% Similarity=0.555 Sum_probs=77.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCC---CCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEE
Q 025517 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRR---TGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 90 (251)
+.++|||+|||+.+++++|+++|.+||+|..|.|+.++. ++.++|||||+|.+.++|++||+.||+..|+|+.|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 567899999999999999999999999999999998765 55889999999999999999999999999999999999
Q ss_pred eccCCCc
Q 025517 91 FAKYGPN 97 (251)
Q Consensus 91 ~a~~~~~ 97 (251)
|++....
T Consensus 84 ~a~~~~~ 90 (98)
T 2cpf_A 84 ISERATK 90 (98)
T ss_dssp CSSCSSC
T ss_pred EccCCCC
Confidence 9976543
No 54
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-20 Score=137.81 Aligned_cols=87 Identities=23% Similarity=0.298 Sum_probs=79.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCC-eeEEEEc-cCCCCCCcceEEEEEEecHHHHHHHHhhhC--CCccCCceE
Q 025517 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGK-VVDVFIP-RDRRTGDSRGFAFVRYKYADEAQKAVDRLD--GRVVDGREI 87 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~-i~~v~i~-~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~--g~~i~g~~l 87 (251)
..+.++|||+|||+.+++++|.++|.+||. |..|.|+ .+..++..+|||||+|.+.++|+.||+.|| +..|+|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 345789999999999999999999999998 9999998 777788999999999999999999999996 589999999
Q ss_pred EEEeccCCCch
Q 025517 88 TVQFAKYGPNA 98 (251)
Q Consensus 88 ~v~~a~~~~~~ 98 (251)
.|.||++....
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999876553
No 55
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.84 E-value=1e-20 Score=132.89 Aligned_cols=83 Identities=35% Similarity=0.532 Sum_probs=76.0
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEE
Q 025517 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (251)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~ 88 (251)
+....+.++|||+|||+.+++++|.++|.+||.|..|.|+.++.+|.++|||||+|.+.++|++||+ +++..|+|+.|.
T Consensus 5 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~ 83 (87)
T 3s7r_A 5 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVID 83 (87)
T ss_dssp --CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEE
Confidence 3445678899999999999999999999999999999999998899999999999999999999997 588899999999
Q ss_pred EEec
Q 025517 89 VQFA 92 (251)
Q Consensus 89 v~~a 92 (251)
|++|
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9986
No 56
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.84 E-value=9.5e-21 Score=147.69 Aligned_cols=86 Identities=26% Similarity=0.476 Sum_probs=80.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEe
Q 025517 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 91 (251)
..+.++|||+|||+.+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|+|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCc
Q 025517 92 AKYGPN 97 (251)
Q Consensus 92 a~~~~~ 97 (251)
+++...
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 986543
No 57
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.84 E-value=1.8e-21 Score=140.73 Aligned_cols=82 Identities=27% Similarity=0.391 Sum_probs=78.0
Q ss_pred CCcEEEEecCCC------CCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCC-ce
Q 025517 14 DTYSLLVLNITF------RTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG-RE 86 (251)
Q Consensus 14 ~~~~l~V~nLp~------~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g-~~ 86 (251)
..++|||+|||+ .+++++|.++|.+||.|..|.|+.++.+|.++|||||+|.+.++|++||+.|||..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 467999999999 99999999999999999999999999889999999999999999999999999999999 99
Q ss_pred EEEEeccCC
Q 025517 87 ITVQFAKYG 95 (251)
Q Consensus 87 l~v~~a~~~ 95 (251)
|.|.++.+.
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999999753
No 58
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.84 E-value=1.6e-20 Score=136.24 Aligned_cols=84 Identities=27% Similarity=0.453 Sum_probs=75.7
Q ss_pred CCCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCce
Q 025517 7 SGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (251)
Q Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~ 86 (251)
.++....+.++|||+|||+.+++++|+++|.+||.|..|.|+. +||||+|.+.++|++||+.||+..|.|+.
T Consensus 3 ~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 74 (103)
T 2dgu_A 3 SGSSGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGEN 74 (103)
T ss_dssp CCCCCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCE
Confidence 3455566788999999999999999999999999999999873 68999999999999999999999999999
Q ss_pred EEEEeccCCCch
Q 025517 87 ITVQFAKYGPNA 98 (251)
Q Consensus 87 l~v~~a~~~~~~ 98 (251)
|.|.|+++....
T Consensus 75 l~v~~a~~~~~~ 86 (103)
T 2dgu_A 75 IEIVFAKPPDQK 86 (103)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEEcCCCccc
Confidence 999999876543
No 59
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.1e-20 Score=135.52 Aligned_cols=86 Identities=21% Similarity=0.322 Sum_probs=77.9
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEE
Q 025517 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (251)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~ 88 (251)
+....+.++|||+|||+.+++++|+++|.+||.|..|.|+.+..+ .+|||||+|.+.++|+.||+.||+..|.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cqi_A 9 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK 86 (103)
T ss_dssp CCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEE
Confidence 344566889999999999999999999999999999999987533 679999999999999999999999999999999
Q ss_pred EEeccCCC
Q 025517 89 VQFAKYGP 96 (251)
Q Consensus 89 v~~a~~~~ 96 (251)
|.|++...
T Consensus 87 V~~a~~~~ 94 (103)
T 2cqi_A 87 VNWATTPS 94 (103)
T ss_dssp EEECCCTT
T ss_pred EEECCCCc
Confidence 99998654
No 60
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-20 Score=135.33 Aligned_cols=84 Identities=23% Similarity=0.255 Sum_probs=76.7
Q ss_pred CCCCCcEEEEecCCCCCCHHHHH----HHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCce
Q 025517 11 DIRDTYSLLVLNITFRTTADDLF----PLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~----~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~ 86 (251)
+..+.++|||+|||+.+++++|+ ++|.+||+|..|.|+.+..+ +|||||+|.+.++|++||+.|||..|+|+.
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34567899999999999999999 99999999999999987654 789999999999999999999999999999
Q ss_pred EEEEeccCCCc
Q 025517 87 ITVQFAKYGPN 97 (251)
Q Consensus 87 l~v~~a~~~~~ 97 (251)
|.|++|++...
T Consensus 82 l~V~~a~~~~~ 92 (96)
T 2dgx_A 82 ILVSLATGASG 92 (96)
T ss_dssp EEEEECCCSSC
T ss_pred EEEEEcCCCCC
Confidence 99999976543
No 61
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=8.7e-21 Score=140.54 Aligned_cols=81 Identities=19% Similarity=0.464 Sum_probs=74.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccC
Q 025517 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 94 (251)
..+|||+|||+.+++++|+++|.+||.|..|.|+.+. +.++|||||+|.+.++|+.||+.||+..|+|+.|.|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 5689999999999999999999999999999999874 44789999999999999999999999999999999999986
Q ss_pred CCc
Q 025517 95 GPN 97 (251)
Q Consensus 95 ~~~ 97 (251)
...
T Consensus 83 ~~~ 85 (115)
T 4f25_A 83 RKE 85 (115)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 62
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.2e-21 Score=140.90 Aligned_cols=88 Identities=33% Similarity=0.534 Sum_probs=81.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025517 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
...++|||+|||+.+++++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|+.||+.|||..|+|+.|.|.|+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 45679999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred cCCCchhh
Q 025517 93 KYGPNAEK 100 (251)
Q Consensus 93 ~~~~~~~~ 100 (251)
........
T Consensus 86 ~~~~~~~~ 93 (104)
T 1p1t_A 86 ASEKNKEE 93 (104)
T ss_dssp TCTTHHHH
T ss_pred CCccchhh
Confidence 87765543
No 63
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.84 E-value=1.3e-20 Score=144.07 Aligned_cols=87 Identities=31% Similarity=0.458 Sum_probs=81.0
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEE
Q 025517 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 90 (251)
.....++|||+|||..+++++|+++|..||+|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34556899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eccCCCc
Q 025517 91 FAKYGPN 97 (251)
Q Consensus 91 ~a~~~~~ 97 (251)
|++....
T Consensus 118 ~a~~~~~ 124 (139)
T 1u6f_A 118 LAASGHQ 124 (139)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9986543
No 64
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=6.3e-21 Score=138.80 Aligned_cols=88 Identities=28% Similarity=0.448 Sum_probs=81.2
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEE
Q 025517 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (251)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~ 88 (251)
.....+.++|||+|||+.+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+. ++..|+|+.|.
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 34456788999999999999999999999999999999999988999999999999999999999998 99999999999
Q ss_pred EEeccCCCc
Q 025517 89 VQFAKYGPN 97 (251)
Q Consensus 89 v~~a~~~~~ 97 (251)
|.++.+...
T Consensus 89 V~~a~~~~~ 97 (105)
T 2dh8_A 89 PKPCTPRGM 97 (105)
T ss_dssp CCCSCCSSC
T ss_pred EEEccCCCC
Confidence 999986543
No 65
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=7.2e-21 Score=136.71 Aligned_cols=84 Identities=21% Similarity=0.310 Sum_probs=77.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEe
Q 025517 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 91 (251)
....++|||+|||+.+++++|+++|.+||.|..+.++.+..++.++|||||+|.+.++|++||+.||+..|.|+.|.|++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34568999999999999999999999999998887888778899999999999999999999999999999999999999
Q ss_pred ccCC
Q 025517 92 AKYG 95 (251)
Q Consensus 92 a~~~ 95 (251)
+...
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8743
No 66
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.84 E-value=7.5e-21 Score=133.72 Aligned_cols=82 Identities=30% Similarity=0.536 Sum_probs=76.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCC-cceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025517 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGD-SRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~-~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
..++|||+|||+.+++++|.++|.+||.|..|.|+.+..++. .+|||||+|.+.++|++||+.|||..|+|+.|.|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 467999999999999999999999999999999998876655 8899999999999999999999999999999999999
Q ss_pred cCC
Q 025517 93 KYG 95 (251)
Q Consensus 93 ~~~ 95 (251)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 67
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.83 E-value=3.3e-20 Score=139.08 Aligned_cols=86 Identities=28% Similarity=0.447 Sum_probs=80.3
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEE
Q 025517 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (251)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v 89 (251)
+...+.++|||+|||+.+++++|+++|.+||+|..|.|+.+. +|..+|||||+|.+.++|+.||+.|||..|+|+.|.|
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 345667899999999999999999999999999999999987 8999999999999999999999999999999999999
Q ss_pred EeccCCC
Q 025517 90 QFAKYGP 96 (251)
Q Consensus 90 ~~a~~~~ 96 (251)
+||....
T Consensus 109 ~~a~~~~ 115 (124)
T 2kt5_A 109 QLVASQI 115 (124)
T ss_dssp EEECCTT
T ss_pred EEeCCCC
Confidence 9997643
No 68
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.83 E-value=2.2e-20 Score=131.63 Aligned_cols=80 Identities=28% Similarity=0.466 Sum_probs=76.4
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccC
Q 025517 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 94 (251)
.++|||+|||+.+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++|| .||+..|.|+.|.|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 578999999999999999999999999999999999889999999999999999999999 8999999999999999975
Q ss_pred C
Q 025517 95 G 95 (251)
Q Consensus 95 ~ 95 (251)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 69
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.2e-20 Score=131.54 Aligned_cols=84 Identities=23% Similarity=0.395 Sum_probs=78.0
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEE
Q 025517 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (251)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v 89 (251)
++....++|||+|||+.+++++|+++|.+| .|..|.|+.+ .+|.++|||||+|.+.++|++||+ ||+..|+|+.|.|
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v 81 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEV 81 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEE
Confidence 344568899999999999999999999999 9999999988 689999999999999999999999 9999999999999
Q ss_pred EeccCCC
Q 025517 90 QFAKYGP 96 (251)
Q Consensus 90 ~~a~~~~ 96 (251)
.++...+
T Consensus 82 ~~a~~~~ 88 (91)
T 2dgw_A 82 FREKSGP 88 (91)
T ss_dssp EEESSCC
T ss_pred EECCcCC
Confidence 9998664
No 70
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.83 E-value=5e-21 Score=136.69 Aligned_cols=82 Identities=22% Similarity=0.321 Sum_probs=75.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025517 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
...++|||+|||+.+++++|+++|.+||.|..|.++.+..++.++|||||+|.+.++|++||+.||+..|+|+.|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34689999999999999999999999999988888888888999999999999999999999999999999999999998
Q ss_pred cC
Q 025517 93 KY 94 (251)
Q Consensus 93 ~~ 94 (251)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 63
No 71
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.83 E-value=1.8e-20 Score=146.19 Aligned_cols=82 Identities=24% Similarity=0.419 Sum_probs=77.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCC--CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEe
Q 025517 14 DTYSLLVLNITFRTTADDLFPLFEKYG--KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 91 (251)
...+|||+|||+++++++|.++|.+|| .|..|.|+.++.+|.++|||||+|.+.++|++||+.|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 357999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 025517 92 AKYG 95 (251)
Q Consensus 92 a~~~ 95 (251)
|...
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9753
No 72
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.9e-20 Score=133.17 Aligned_cols=87 Identities=29% Similarity=0.541 Sum_probs=79.0
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEE
Q 025517 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (251)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~ 88 (251)
+....+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||. ++..|+|+.|.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~ 86 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCD 86 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEE
Confidence 3445667899999999999999999999999999999999998889999999999999999999999 46789999999
Q ss_pred EEeccCCCc
Q 025517 89 VQFAKYGPN 97 (251)
Q Consensus 89 v~~a~~~~~ 97 (251)
|.|+.....
T Consensus 87 v~~a~~~~~ 95 (103)
T 2cqg_A 87 CKLPNSKQS 95 (103)
T ss_dssp EECCCTTCC
T ss_pred EEecCCCCc
Confidence 999986543
No 73
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.83 E-value=2.4e-20 Score=133.96 Aligned_cols=78 Identities=14% Similarity=0.189 Sum_probs=71.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCc--cCCceEEE
Q 025517 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRV--VDGREITV 89 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~--i~g~~l~v 89 (251)
..+..+|||+|||+.+|+++|.++|.+||.|..|.|+.. +|||||+|++.++|++||+.|++.. |.|++|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 446789999999999999999999999999999998754 3899999999999999999999875 78999999
Q ss_pred EeccCC
Q 025517 90 QFAKYG 95 (251)
Q Consensus 90 ~~a~~~ 95 (251)
+|++.+
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 999754
No 74
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.1e-20 Score=135.80 Aligned_cols=81 Identities=20% Similarity=0.294 Sum_probs=75.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEe
Q 025517 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 91 (251)
.....+|||+|||+.+|+++|.++|.+||+|..|.|+.++. |.++|||||+|.+.++|+.||. +++..|+|+.|.|.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999876 9999999999999999999999 899999999999999
Q ss_pred ccC
Q 025517 92 AKY 94 (251)
Q Consensus 92 a~~ 94 (251)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 864
No 75
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=2.4e-20 Score=137.28 Aligned_cols=87 Identities=21% Similarity=0.383 Sum_probs=78.5
Q ss_pred CCCCCcEEEEecCCCCCCHHHHH---HHhhcCCCeeEEEEccCCCCC---CcceEEEEEEecHHHHHHHHhhhCCCccCC
Q 025517 11 DIRDTYSLLVLNITFRTTADDLF---PLFEKYGKVVDVFIPRDRRTG---DSRGFAFVRYKYADEAQKAVDRLDGRVVDG 84 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~---~~f~~~G~i~~v~i~~~~~~g---~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g 84 (251)
......+|||+|||+.+++++|. ++|.+||+|..|.|+.+..++ .++|||||+|.+.++|++||+.||+..|+|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34567899999999999999999 999999999999998877644 456999999999999999999999999999
Q ss_pred ceEEEEeccCCCc
Q 025517 85 REITVQFAKYGPN 97 (251)
Q Consensus 85 ~~l~v~~a~~~~~ 97 (251)
+.|.|+||.+.+.
T Consensus 91 r~l~V~~a~~k~~ 103 (111)
T 2cpi_A 91 RTLKASLGTTKYC 103 (111)
T ss_dssp EEEEEESCCCCSC
T ss_pred EEEEEEecccccc
Confidence 9999999987653
No 76
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.83 E-value=8.1e-21 Score=144.73 Aligned_cols=89 Identities=55% Similarity=0.929 Sum_probs=82.1
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEE
Q 025517 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (251)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~ 88 (251)
+++..+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|.|+.|.
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34456678999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred EEeccCCCc
Q 025517 89 VQFAKYGPN 97 (251)
Q Consensus 89 v~~a~~~~~ 97 (251)
|.|+++...
T Consensus 121 V~~a~~~~~ 129 (135)
T 2lea_A 121 VQMARYGRP 129 (135)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCCC
Confidence 999986543
No 77
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.8e-20 Score=133.61 Aligned_cols=86 Identities=21% Similarity=0.339 Sum_probs=77.6
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeE-EEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceE
Q 025517 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVD-VFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (251)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~-v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l 87 (251)
.++....++|||+|||+.+++++|+++|.+||.|.. |.|+.+ .+|.++|||||+|.+.++|++||+. |+..|+|+.|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i 86 (104)
T 1wg5_A 9 SPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYI 86 (104)
T ss_dssp CSSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEE
Confidence 344566899999999999999999999999999987 888887 6899999999999999999999997 9999999999
Q ss_pred EEEeccCCC
Q 025517 88 TVQFAKYGP 96 (251)
Q Consensus 88 ~v~~a~~~~ 96 (251)
.|.++....
T Consensus 87 ~v~~~~~~~ 95 (104)
T 1wg5_A 87 EIFKSSRAE 95 (104)
T ss_dssp EEEEECTTT
T ss_pred EEEECCHHH
Confidence 999986543
No 78
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.3e-20 Score=136.70 Aligned_cols=80 Identities=18% Similarity=0.319 Sum_probs=72.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCC--CccCCceEEEE
Q 025517 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG--RVVDGREITVQ 90 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g--~~i~g~~l~v~ 90 (251)
.+..+|||+|||+.+++++|+++|.+||+|..|.|+.+ +|||||+|++.++|+.||+.|++ ..|.|++|.|+
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 35789999999999999999999999999999999875 49999999999999999998864 68999999999
Q ss_pred eccCCCch
Q 025517 91 FAKYGPNA 98 (251)
Q Consensus 91 ~a~~~~~~ 98 (251)
|++.....
T Consensus 88 ~A~~~~~~ 95 (105)
T 1sjq_A 88 FSNHKELK 95 (105)
T ss_dssp CCSSSSCC
T ss_pred EcCCCCCC
Confidence 99865443
No 79
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=4.9e-20 Score=130.34 Aligned_cols=79 Identities=25% Similarity=0.402 Sum_probs=72.9
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEE
Q 025517 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 90 (251)
+..+.++|||+|||+.+++++|+++|.+||+|..|.|+ +|||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 44568899999999999999999999999999999987 3899999999999999999999999999999999
Q ss_pred eccCCCc
Q 025517 91 FAKYGPN 97 (251)
Q Consensus 91 ~a~~~~~ 97 (251)
|++....
T Consensus 76 ~a~~~~~ 82 (90)
T 2dnq_A 76 ASKNKSK 82 (90)
T ss_dssp CSSCCCC
T ss_pred ECCCCCC
Confidence 9986544
No 80
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.82 E-value=1.5e-20 Score=128.41 Aligned_cols=75 Identities=27% Similarity=0.488 Sum_probs=72.2
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025517 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
+|||+|||+.+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|++||+ ||+..|+|+.|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 49999999999999999999999999999999998889999999999999999999998 9999999999999986
No 81
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.3e-21 Score=133.83 Aligned_cols=81 Identities=27% Similarity=0.370 Sum_probs=76.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025517 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
.++++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+.|||..|.|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999988775
Q ss_pred c
Q 025517 93 K 93 (251)
Q Consensus 93 ~ 93 (251)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 82
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=8.1e-20 Score=131.02 Aligned_cols=80 Identities=28% Similarity=0.442 Sum_probs=73.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccC--CceEE
Q 025517 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD--GREIT 88 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~--g~~l~ 88 (251)
...+.++|||+|||+.+++++|+++|.+||.|..|.|+.+ +|||||+|.+.++|++||+.||+..|. |+.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3455789999999999999999999999999999999764 489999999999999999999999999 99999
Q ss_pred EEeccCCC
Q 025517 89 VQFAKYGP 96 (251)
Q Consensus 89 v~~a~~~~ 96 (251)
|+|+++.+
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998654
No 83
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.82 E-value=9.8e-21 Score=136.75 Aligned_cols=84 Identities=19% Similarity=0.381 Sum_probs=74.6
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCC-CCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEE
Q 025517 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDR-RTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (251)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~-~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~ 88 (251)
......++|||+|||+.+++++|+++|.+|| |..|.|+.+. .+|.++|||||+|.+.++|+.|| .|||..|+|+.|.
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3446678999999999999999999999999 9999999887 58999999999999999999999 7999999999999
Q ss_pred EEeccCC
Q 025517 89 VQFAKYG 95 (251)
Q Consensus 89 v~~a~~~ 95 (251)
|+++++.
T Consensus 92 V~~a~~~ 98 (100)
T 2j76_E 92 VDVADQA 98 (100)
T ss_dssp CEECCCS
T ss_pred EEeccCC
Confidence 9999764
No 84
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.82 E-value=4.9e-20 Score=140.73 Aligned_cols=82 Identities=30% Similarity=0.489 Sum_probs=77.2
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEE
Q 025517 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 90 (251)
...+..+|||+|||+.+++++|+++|.+||+|..|.|+.++.++..+|||||+|.+.++|++||+.||+..|.|+.|.|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ec
Q 025517 91 FA 92 (251)
Q Consensus 91 ~a 92 (251)
||
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 86
No 85
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.8e-20 Score=138.48 Aligned_cols=81 Identities=28% Similarity=0.395 Sum_probs=76.8
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccC
Q 025517 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 94 (251)
.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++..+|||||+|.+.++|++|| .||+..|+|+.|.|.|++.
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 479999999999999999999999999999999999888999999999999999999999 8999999999999999975
Q ss_pred CC
Q 025517 95 GP 96 (251)
Q Consensus 95 ~~ 96 (251)
..
T Consensus 104 ~~ 105 (114)
T 2cq4_A 104 EK 105 (114)
T ss_dssp HH
T ss_pred Cc
Confidence 43
No 86
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=4.6e-20 Score=138.91 Aligned_cols=89 Identities=20% Similarity=0.400 Sum_probs=77.9
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHH----HHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCC
Q 025517 9 PPDIRDTYSLLVLNITFRTTADDLF----PLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG 84 (251)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~L~----~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g 84 (251)
+++..+..+|||+|||+.+++++|+ ++|.+||.|..|.|.. ++.++|||||+|.+.++|+.||..|||..|.|
T Consensus 23 ~~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g 99 (127)
T 2a3j_A 23 PPHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQG 99 (127)
T ss_dssp CCCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 3445668899999999999999876 6999999999998753 57789999999999999999999999999999
Q ss_pred ceEEEEeccCCCchhh
Q 025517 85 REITVQFAKYGPNAEK 100 (251)
Q Consensus 85 ~~l~v~~a~~~~~~~~ 100 (251)
++|.|.||+.......
T Consensus 100 r~l~V~~a~~~~~~~~ 115 (127)
T 2a3j_A 100 NPLVITFSETPQSQVA 115 (127)
T ss_dssp SCCEEEECCCCCHHHH
T ss_pred CEEEEEEccCcchhcc
Confidence 9999999987655443
No 87
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.8e-20 Score=137.10 Aligned_cols=82 Identities=28% Similarity=0.462 Sum_probs=77.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccC
Q 025517 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 94 (251)
.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.||+. ++..|+|+.|.|.|+.+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 48999999999999999999999999999999999988899999999999999999999997 99999999999999986
Q ss_pred CCc
Q 025517 95 GPN 97 (251)
Q Consensus 95 ~~~ 97 (251)
...
T Consensus 106 ~~~ 108 (116)
T 1x4b_A 106 REE 108 (116)
T ss_dssp CCC
T ss_pred Ccc
Confidence 543
No 88
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.82 E-value=2.3e-20 Score=137.19 Aligned_cols=81 Identities=19% Similarity=0.192 Sum_probs=72.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEE
Q 025517 12 IRDTYSLLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 90 (251)
....++|||+|||+.+++++|+++|.+|| +|..|.|+.. ..+|||||+|.+.++|++||+.|||..|+|+.|.|+
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34578999999999999999999999999 8999988632 367999999999999999999999999999999999
Q ss_pred eccCCC
Q 025517 91 FAKYGP 96 (251)
Q Consensus 91 ~a~~~~ 96 (251)
++...+
T Consensus 101 ~a~~~p 106 (111)
T 2jvr_A 101 RDDNPP 106 (111)
T ss_dssp ESCC--
T ss_pred ECCCCC
Confidence 997544
No 89
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=6.8e-20 Score=133.26 Aligned_cols=82 Identities=16% Similarity=0.211 Sum_probs=72.4
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCC--ccCCceE
Q 025517 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR--VVDGREI 87 (251)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~--~i~g~~l 87 (251)
....+..+|||+|||+.+++++|+++|.+||.|..|.|+.+ +|||||+|++.++|++||+.|++. .|.|++|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l 83 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQA 83 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 34456789999999999999999999999999999998764 489999999999999999988754 5899999
Q ss_pred EEEeccCCCc
Q 025517 88 TVQFAKYGPN 97 (251)
Q Consensus 88 ~v~~a~~~~~ 97 (251)
.|+|++....
T Consensus 84 ~V~~a~~~~~ 93 (104)
T 1wex_A 84 FFNYSTSKRI 93 (104)
T ss_dssp EEEECSSSSC
T ss_pred EEEEccCccc
Confidence 9999986543
No 90
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.9e-20 Score=131.65 Aligned_cols=81 Identities=16% Similarity=0.216 Sum_probs=72.1
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhh--CCCccCCceEE
Q 025517 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL--DGRVVDGREIT 88 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l--~g~~i~g~~l~ 88 (251)
...+..+|||+|||+.+++++|+++|.+||.|..|.|+.+ +|||||+|++.++|+.||+.| ++..|.|++|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3456789999999999999999999999999999988765 499999999999999999977 46789999999
Q ss_pred EEeccCCCc
Q 025517 89 VQFAKYGPN 97 (251)
Q Consensus 89 v~~a~~~~~ 97 (251)
|+|++....
T Consensus 85 V~~a~~~~~ 93 (101)
T 2cq1_A 85 IQYSNHKEL 93 (101)
T ss_dssp EEECSCSSC
T ss_pred EEEcCcccC
Confidence 999986543
No 91
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.82 E-value=4.4e-20 Score=135.46 Aligned_cols=84 Identities=23% Similarity=0.365 Sum_probs=75.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEe
Q 025517 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 91 (251)
..+.++|||+|||+.+++++|.++|.+||.|..|.|+.+..+|.++|||||+|.+.++|++||+.+ +..|+|+.|.|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 345789999999999999999999999999999999999888999999999999999999999976 4999999999999
Q ss_pred ccCCC
Q 025517 92 AKYGP 96 (251)
Q Consensus 92 a~~~~ 96 (251)
+.+..
T Consensus 101 a~~~~ 105 (109)
T 2rs2_A 101 AFPRR 105 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 98654
No 92
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=3e-20 Score=134.48 Aligned_cols=79 Identities=19% Similarity=0.309 Sum_probs=71.3
Q ss_pred CCCCcEEEEecCCC-CCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCC--ccCCceEE
Q 025517 12 IRDTYSLLVLNITF-RTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR--VVDGREIT 88 (251)
Q Consensus 12 ~~~~~~l~V~nLp~-~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~--~i~g~~l~ 88 (251)
..+..+|||+|||+ .+++++|.++|.+||.|..|.|+.++ |||||+|++.++|++||+.||+. .|.|++|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 34678999999999 99999999999999999999998754 89999999999999999998864 59999999
Q ss_pred EEeccCCC
Q 025517 89 VQFAKYGP 96 (251)
Q Consensus 89 v~~a~~~~ 96 (251)
|+||+...
T Consensus 86 V~~a~~~~ 93 (102)
T 1x4d_A 86 VHLSQKYK 93 (102)
T ss_dssp EEEECCCT
T ss_pred EEECCCCC
Confidence 99998543
No 93
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=6.6e-20 Score=131.98 Aligned_cols=83 Identities=34% Similarity=0.534 Sum_probs=75.3
Q ss_pred CCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceE
Q 025517 8 GPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (251)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l 87 (251)
......+.++|||+|||+.+++++|+++|.+||+|..|.|+.+ +|||||+|.+.++|++||+.||+..|.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l 81 (99)
T 2cpj_A 8 GEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQL 81 (99)
T ss_dssp CSCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCC
T ss_pred CCCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceE
Confidence 3445567789999999999999999999999999999999865 3899999999999999999999999999999
Q ss_pred EEEeccCCC
Q 025517 88 TVQFAKYGP 96 (251)
Q Consensus 88 ~v~~a~~~~ 96 (251)
.|.|++...
T Consensus 82 ~v~~a~~~~ 90 (99)
T 2cpj_A 82 RVRFACHSA 90 (99)
T ss_dssp EEEESSCCS
T ss_pred EEEEcCCCC
Confidence 999998654
No 94
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.82 E-value=1.6e-20 Score=142.24 Aligned_cols=85 Identities=26% Similarity=0.436 Sum_probs=78.9
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeE--EEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCC----ccCC
Q 025517 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVD--VFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR----VVDG 84 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~--v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~----~i~g 84 (251)
......+|||+|||+.+|+++|+++|.+||.|.. |.|+.++.+|.++|||||+|.+. +|++||..|||. .|+|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3455789999999999999999999999999966 99999998999999999999999 999999999999 9999
Q ss_pred ceEEEEeccCCC
Q 025517 85 REITVQFAKYGP 96 (251)
Q Consensus 85 ~~l~v~~a~~~~ 96 (251)
+.|.|.|+++..
T Consensus 98 r~l~V~~a~~~~ 109 (131)
T 2m2b_A 98 KTINVEFAKGSK 109 (131)
T ss_dssp CCCCCEECCCSC
T ss_pred EEEEEEECCCCC
Confidence 999999998643
No 95
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4e-20 Score=136.74 Aligned_cols=85 Identities=24% Similarity=0.294 Sum_probs=78.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCe-eEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEE
Q 025517 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKV-VDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 90 (251)
..+.++|||+|||+.+++++|+++|..||.| ..|.|+.++ +|.++|||||+|.+.++|++||+. |+..|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 4567899999999999999999999999999 889999987 899999999999999999999996 9999999999999
Q ss_pred eccCCCch
Q 025517 91 FAKYGPNA 98 (251)
Q Consensus 91 ~a~~~~~~ 98 (251)
++......
T Consensus 90 ~a~~~~~~ 97 (114)
T 2cpy_A 90 VVTLEDMR 97 (114)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99765433
No 96
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.82 E-value=4.1e-20 Score=137.55 Aligned_cols=85 Identities=20% Similarity=0.279 Sum_probs=77.8
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCC---eeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCce
Q 025517 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGK---VVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (251)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~---i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~ 86 (251)
++..+.++|||+|||+.+|+++|+++|..||. |..|.|+.+.. |.++|||||+|.+.++|++||+ ||+..|+|+.
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~ 89 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRY 89 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeE
Confidence 44566889999999999999999999999999 89999998875 9999999999999999999999 9999999999
Q ss_pred EEEEeccCCC
Q 025517 87 ITVQFAKYGP 96 (251)
Q Consensus 87 l~v~~a~~~~ 96 (251)
|.|.++....
T Consensus 90 i~V~~a~~~~ 99 (118)
T 2db1_A 90 IEVFKSHRTE 99 (118)
T ss_dssp EEEEEECHHH
T ss_pred EEEEECCHHH
Confidence 9999996543
No 97
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.9e-20 Score=133.61 Aligned_cols=84 Identities=17% Similarity=0.234 Sum_probs=75.9
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEE
Q 025517 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (251)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v 89 (251)
......++|||+|||+.+|+++|+++|.+||.| .|.|+.++ ++.++|||||+|.+.++|++||+ +|+..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVEL 86 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 345667899999999999999999999999954 99999887 89999999999999999999996 7999999999999
Q ss_pred EeccCCC
Q 025517 90 QFAKYGP 96 (251)
Q Consensus 90 ~~a~~~~ 96 (251)
.++....
T Consensus 87 ~~~~~~~ 93 (102)
T 1wez_A 87 FLNSTAG 93 (102)
T ss_dssp EEECCCC
T ss_pred EECCCCC
Confidence 9987543
No 98
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.6e-20 Score=140.94 Aligned_cols=85 Identities=15% Similarity=0.224 Sum_probs=76.6
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEE
Q 025517 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 90 (251)
+..+.++|||+|||+.+|+++|.++|..||.|..+.++.+..+|.++|||||+|.+.++|++||+ ||+..|+|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 44567899999999999999999999999999886556666689999999999999999999999 99999999999999
Q ss_pred eccCCC
Q 025517 91 FAKYGP 96 (251)
Q Consensus 91 ~a~~~~ 96 (251)
++....
T Consensus 100 ~a~~~~ 105 (124)
T 1wel_A 100 PITKKG 105 (124)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997543
No 99
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.82 E-value=5.3e-20 Score=134.05 Aligned_cols=83 Identities=23% Similarity=0.378 Sum_probs=75.6
Q ss_pred CCCCCcEEEEecCCCCC------CHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCC
Q 025517 11 DIRDTYSLLVLNITFRT------TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG 84 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~------t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g 84 (251)
.....++|||+|||+.+ ++++|.++|.+||.|..|.|+ ..+|.++|||||+|.+.++|+.||..|||..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 34457899999999999 789999999999999999987 3578999999999999999999999999999999
Q ss_pred c-eEEEEeccCC
Q 025517 85 R-EITVQFAKYG 95 (251)
Q Consensus 85 ~-~l~v~~a~~~ 95 (251)
+ .|.|.++...
T Consensus 89 ~~~l~V~~a~~~ 100 (105)
T 2nlw_A 89 QHTFRVNLFTDF 100 (105)
T ss_dssp TCEEEEECSCCC
T ss_pred CceEEEEEcchH
Confidence 8 9999999743
No 100
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.82 E-value=9.5e-20 Score=142.13 Aligned_cols=84 Identities=55% Similarity=0.913 Sum_probs=79.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEe
Q 025517 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 91 (251)
....++|||+|||+.+++++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|+.||+.|||..|+|+.|.|.|
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCC
Q 025517 92 AKYG 95 (251)
Q Consensus 92 a~~~ 95 (251)
+++.
T Consensus 147 a~~~ 150 (158)
T 2kn4_A 147 ARYG 150 (158)
T ss_dssp ECCS
T ss_pred CCCC
Confidence 9864
No 101
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.82 E-value=6.2e-20 Score=137.49 Aligned_cols=80 Identities=28% Similarity=0.456 Sum_probs=76.3
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccC
Q 025517 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 94 (251)
.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|+.|| .|||..|+|+.|.|.|++.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 479999999999999999999999999999999998889999999999999999999999 7999999999999999975
Q ss_pred C
Q 025517 95 G 95 (251)
Q Consensus 95 ~ 95 (251)
.
T Consensus 115 ~ 115 (124)
T 2jwn_A 115 N 115 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 102
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=6.9e-20 Score=128.02 Aligned_cols=79 Identities=19% Similarity=0.368 Sum_probs=72.7
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhh-CCCccCCceE
Q 025517 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL-DGRVVDGREI 87 (251)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l-~g~~i~g~~l 87 (251)
++......+|||+|||..+++++|+++|.+||.|..|.|+.+ +|||||+|.+.++|+.||+.| ++..|+|+.|
T Consensus 6 ~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l 79 (85)
T 2ytc_A 6 SGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRL 79 (85)
T ss_dssp CCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEEC
T ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEE
Confidence 445567789999999999999999999999999999999864 489999999999999999998 9999999999
Q ss_pred EEEecc
Q 025517 88 TVQFAK 93 (251)
Q Consensus 88 ~v~~a~ 93 (251)
.|+||+
T Consensus 80 ~v~~ak 85 (85)
T 2ytc_A 80 NVKWGR 85 (85)
T ss_dssp CEEECC
T ss_pred EEEecC
Confidence 999985
No 103
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.5e-19 Score=133.41 Aligned_cols=82 Identities=21% Similarity=0.475 Sum_probs=76.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCcc--------C
Q 025517 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV--------D 83 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i--------~ 83 (251)
..+.++|||+|||+.+++++|.++|.+||.|..|.|+.+. ++.++|||||+|.+.++|+.||+.|||..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 4567899999999999999999999999999999999987 899999999999999999999999999998 5
Q ss_pred CceEEEEeccC
Q 025517 84 GREITVQFAKY 94 (251)
Q Consensus 84 g~~l~v~~a~~ 94 (251)
+++|.|.|+.+
T Consensus 101 ~~~l~v~~a~p 111 (114)
T 1x5o_A 101 TEPLLCKFSGP 111 (114)
T ss_dssp SSCBEEEECCC
T ss_pred CCceeEEccCC
Confidence 78899999974
No 104
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=131.06 Aligned_cols=82 Identities=23% Similarity=0.495 Sum_probs=73.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEE
Q 025517 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 90 (251)
...+.++|||+|||+.+++++|+++|.+||.| .|+.+ .++..+|||||+|.+.++|++||+.||+..|.|+.|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 44568999999999999999999999999987 45555 578899999999999999999999999999999999999
Q ss_pred eccCCC
Q 025517 91 FAKYGP 96 (251)
Q Consensus 91 ~a~~~~ 96 (251)
|+++..
T Consensus 87 ~a~~~~ 92 (101)
T 2fc9_A 87 LQGPRG 92 (101)
T ss_dssp ECSSCC
T ss_pred EcCCCC
Confidence 998654
No 105
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=128.59 Aligned_cols=80 Identities=29% Similarity=0.420 Sum_probs=73.3
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEE
Q 025517 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (251)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v 89 (251)
+...+.++|||+|||+.+++++|+++|.+||.|..|.|+. +||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 4456688999999999999999999999999999999974 59999999999999999999999999999999
Q ss_pred EeccCCCc
Q 025517 90 QFAKYGPN 97 (251)
Q Consensus 90 ~~a~~~~~ 97 (251)
+|+++...
T Consensus 77 ~~a~~~~~ 84 (92)
T 2dgt_A 77 QLSTSRLR 84 (92)
T ss_dssp EESSCCCS
T ss_pred EEccCCCC
Confidence 99986543
No 106
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.5e-20 Score=136.12 Aligned_cols=81 Identities=17% Similarity=0.297 Sum_probs=72.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCC--CccCCceEE
Q 025517 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG--RVVDGREIT 88 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g--~~i~g~~l~ 88 (251)
...+..+|||+|||+.+++++|+++|.+||.|+.|.|+.+ +|||||+|++.++|++||+.|++ ..|.|++|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3455789999999999999999999999999999999875 49999999999999999999874 689999999
Q ss_pred EEeccCCCc
Q 025517 89 VQFAKYGPN 97 (251)
Q Consensus 89 v~~a~~~~~ 97 (251)
|+|++....
T Consensus 101 V~~a~~k~~ 109 (119)
T 2ad9_A 101 IQFSNHKEL 109 (119)
T ss_dssp EEECSSSSC
T ss_pred EEEccCCCC
Confidence 999986544
No 107
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.5e-20 Score=134.53 Aligned_cols=83 Identities=36% Similarity=0.580 Sum_probs=76.2
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEE
Q 025517 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 90 (251)
...+.++|||+|||..+++++|+++|.+||.|..|.|+.+. +..+|||||+|.+.++|++||+.|||..|+|+.|.|+
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999998874 3478999999999999999999999999999999999
Q ss_pred eccCC
Q 025517 91 FAKYG 95 (251)
Q Consensus 91 ~a~~~ 95 (251)
|+++.
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99764
No 108
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.81 E-value=4.9e-20 Score=128.23 Aligned_cols=73 Identities=25% Similarity=0.274 Sum_probs=69.2
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEecc
Q 025517 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 93 (251)
...|||+||++.+|+++|.++|.+||+|..|.|+. ++|||||+|.+.++|++||+.||+..|.|++|.|++|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 66899999999999999999999999999999876 35999999999999999999999999999999999994
No 109
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.81 E-value=5.1e-20 Score=152.41 Aligned_cols=82 Identities=26% Similarity=0.385 Sum_probs=77.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCC--CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEe
Q 025517 14 DTYSLLVLNITFRTTADDLFPLFEKYG--KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 91 (251)
..++|||+||++.+|+++|+++|.+|| .|+.|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|.|.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 467899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 025517 92 AKYG 95 (251)
Q Consensus 92 a~~~ 95 (251)
|+..
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 9754
No 110
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.4e-20 Score=127.83 Aligned_cols=76 Identities=25% Similarity=0.466 Sum_probs=73.0
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025517 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
++|||+|||+.+++++|+++|.+||+|..|.|+.++.+|.++|||||+|.+.++|++||+.|+ ..|+|+.|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998889999999999999999999999999 9999999999987
No 111
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.81 E-value=1.5e-20 Score=132.92 Aligned_cols=81 Identities=30% Similarity=0.475 Sum_probs=73.9
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccCC
Q 025517 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG 95 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 95 (251)
++|||+|||..+++++|+++|.+||+|..|.|+.++.+|.++|||||+|.+.+ |+.|+..|||..|+|+.|.|++|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 47999999999999999999999999999999999888999999999999999 99999999999999999999999865
Q ss_pred Cc
Q 025517 96 PN 97 (251)
Q Consensus 96 ~~ 97 (251)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 112
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=130.30 Aligned_cols=81 Identities=22% Similarity=0.241 Sum_probs=71.9
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEE
Q 025517 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 90 (251)
+....++|||+|||+.+++++|+++|.+||.|. +.|+. +..+|||||+|.+.++|+.||+.|||..|+|+.|.|+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345578999999999999999999999999996 55553 3566999999999999999999999999999999999
Q ss_pred eccCCC
Q 025517 91 FAKYGP 96 (251)
Q Consensus 91 ~a~~~~ 96 (251)
|+++..
T Consensus 90 ~a~~~~ 95 (97)
T 2e5j_A 90 LARQQR 95 (97)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 998654
No 113
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.81 E-value=7.9e-20 Score=139.17 Aligned_cols=84 Identities=18% Similarity=0.258 Sum_probs=77.8
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCC---eeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCce
Q 025517 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGK---VVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (251)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~---i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~ 86 (251)
++..+.++|||+|||+.+|+++|+++|.+||. |..|.|+.++. |.++|||||+|.+.++|++||+ ||+..|+|+.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 44567889999999999999999999999999 88999998876 9999999999999999999999 9999999999
Q ss_pred EEEEeccCC
Q 025517 87 ITVQFAKYG 95 (251)
Q Consensus 87 l~v~~a~~~ 95 (251)
|.|.++...
T Consensus 117 i~V~~a~~~ 125 (136)
T 2hgl_A 117 IEVFKSHRT 125 (136)
T ss_dssp EEEEECCHH
T ss_pred EEEEECChH
Confidence 999998644
No 114
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=130.38 Aligned_cols=85 Identities=27% Similarity=0.436 Sum_probs=75.5
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEE
Q 025517 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (251)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v 89 (251)
+...+.++|||+|||+.+++++|+++|..|+ .|.|+.+..++.++|||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3456678999999999999999999999874 5666677778999999999999999999999999999999999999
Q ss_pred EeccCCCc
Q 025517 90 QFAKYGPN 97 (251)
Q Consensus 90 ~~a~~~~~ 97 (251)
+|+++...
T Consensus 87 ~~a~~~~~ 94 (102)
T 2fc8_A 87 DWAKPKGE 94 (102)
T ss_dssp EECCCCCS
T ss_pred EEecCCCC
Confidence 99986543
No 115
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.81 E-value=1e-19 Score=144.79 Aligned_cols=85 Identities=28% Similarity=0.454 Sum_probs=79.2
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEE
Q 025517 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 90 (251)
...+.++|||+|||+.+++++|+++|.+||+|+.|.|+.+. ++.++|||||+|.+.++|++||+.||+..|+|+.|.|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34557899999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred eccCCC
Q 025517 91 FAKYGP 96 (251)
Q Consensus 91 ~a~~~~ 96 (251)
||....
T Consensus 163 ~a~~~~ 168 (177)
T 2f3j_A 163 LVASQI 168 (177)
T ss_dssp EESSGG
T ss_pred EecCCC
Confidence 997543
No 116
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=128.05 Aligned_cols=77 Identities=29% Similarity=0.569 Sum_probs=71.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEe
Q 025517 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 91 (251)
..+.++|||+|||+.+++++|+++|.+||.|..|.|+. +||||+|.+.++|+.||+.||+..|+|+.|.|.|
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999974 5899999999999999999999999999999999
Q ss_pred ccCCC
Q 025517 92 AKYGP 96 (251)
Q Consensus 92 a~~~~ 96 (251)
+++..
T Consensus 78 a~~~~ 82 (90)
T 2dnp_A 78 STKGQ 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 97653
No 117
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.81 E-value=4.6e-20 Score=134.85 Aligned_cols=86 Identities=16% Similarity=0.273 Sum_probs=78.7
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCC---eeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCc
Q 025517 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGK---VVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGR 85 (251)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~---i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~ 85 (251)
..+..+.++|||+|||+.+|+++|+++|..||. |..|.|+.++. |.++|||||+|.+.++|++||+ ||+..|+|+
T Consensus 5 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr 82 (107)
T 2lmi_A 5 EEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQR 82 (107)
T ss_dssp CCCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSS
T ss_pred cCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCe
Confidence 345567899999999999999999999999998 89999998876 9999999999999999999999 999999999
Q ss_pred eEEEEeccCCC
Q 025517 86 EITVQFAKYGP 96 (251)
Q Consensus 86 ~l~v~~a~~~~ 96 (251)
.|.|.++....
T Consensus 83 ~i~V~~a~~~~ 93 (107)
T 2lmi_A 83 YVEVYEINNED 93 (107)
T ss_dssp CCCCEECCHHH
T ss_pred EEEEEECCHHH
Confidence 99999997543
No 118
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.1e-19 Score=133.19 Aligned_cols=83 Identities=19% Similarity=0.282 Sum_probs=75.0
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEE
Q 025517 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (251)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v 89 (251)
+...+.++|||+|||+.+++++|+++|.+| .|..|.|+.++. |.++|||||+|.+.++|++|| .||+..|+|+.|.|
T Consensus 11 ~~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V 87 (109)
T 2dnn_A 11 PINPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEV 87 (109)
T ss_dssp CCCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEE
Confidence 334456899999999999999999999999 899999998864 899999999999999999999 59999999999999
Q ss_pred EeccCC
Q 025517 90 QFAKYG 95 (251)
Q Consensus 90 ~~a~~~ 95 (251)
..+...
T Consensus 88 ~~a~~~ 93 (109)
T 2dnn_A 88 SPATER 93 (109)
T ss_dssp EECCHH
T ss_pred EECCcc
Confidence 988643
No 119
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.80 E-value=5.9e-20 Score=131.58 Aligned_cols=86 Identities=24% Similarity=0.508 Sum_probs=76.1
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHH----HHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCc
Q 025517 10 PDIRDTYSLLVLNITFRTTADDLF----PLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGR 85 (251)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~L~----~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~ 85 (251)
++..+.++|||+|||+.+++++|+ ++|.+||.|..|.|+. +|..+|||||+|.+.++|+.||+.|||..|+|+
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 79 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCc
Confidence 445678899999999999999999 9999999999998873 466779999999999999999999999999999
Q ss_pred eEEEEeccCCCch
Q 025517 86 EITVQFAKYGPNA 98 (251)
Q Consensus 86 ~l~v~~a~~~~~~ 98 (251)
.|.|.|+++....
T Consensus 80 ~l~v~~a~~~~~~ 92 (97)
T 1nu4_A 80 PMRIQYAKTDSDI 92 (97)
T ss_dssp ECEEEECSSCCTH
T ss_pred EEEEEEccCCCcc
Confidence 9999999876543
No 120
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.5e-20 Score=137.79 Aligned_cols=81 Identities=25% Similarity=0.403 Sum_probs=72.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCe----eEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceE
Q 025517 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKV----VDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i----~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l 87 (251)
..+.++|||+|||+.+++++|.++|.+||.| ..+.+. ++.++|||||+|.+.++|+.||+.||+..|+|+.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 3457899999999999999999999999998 444443 77888999999999999999999999999999999
Q ss_pred EEEeccCCC
Q 025517 88 TVQFAKYGP 96 (251)
Q Consensus 88 ~v~~a~~~~ 96 (251)
.|.|++...
T Consensus 98 ~v~~a~~~~ 106 (115)
T 2cpx_A 98 VIEFGKNKK 106 (115)
T ss_dssp EEEECCCCS
T ss_pred EEEEccCCC
Confidence 999998654
No 121
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.2e-19 Score=131.59 Aligned_cols=79 Identities=18% Similarity=0.435 Sum_probs=73.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025517 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
...++|||+|||..+++++|+++|.+||.|..|.|+.+ +|||||+|.+.++|+.||..|||..|+|+.|.|.|+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 45789999999999999999999999999999999876 489999999999999999999999999999999999
Q ss_pred cCCCc
Q 025517 93 KYGPN 97 (251)
Q Consensus 93 ~~~~~ 97 (251)
+..+.
T Consensus 97 ~~~~~ 101 (109)
T 1x4g_A 97 KESPD 101 (109)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 87654
No 122
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.6e-19 Score=126.40 Aligned_cols=79 Identities=29% Similarity=0.415 Sum_probs=71.9
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcC--CCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceE
Q 025517 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKY--GKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (251)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l 87 (251)
....+.++|||+|||+.+++++|+++|.+| |.|..|.++. |||||+|.+.++|++||..||+..|+|+.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~--------g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR--------DYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECS--------SEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeC--------CeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 344567899999999999999999999999 9999998753 799999999999999999999999999999
Q ss_pred EEEeccCCC
Q 025517 88 TVQFAKYGP 96 (251)
Q Consensus 88 ~v~~a~~~~ 96 (251)
.|.|+++..
T Consensus 82 ~v~~a~~~~ 90 (99)
T 2cpd_A 82 EVTLAKPVD 90 (99)
T ss_dssp EEECCCCCC
T ss_pred EEEECCCCC
Confidence 999998654
No 123
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.80 E-value=2e-19 Score=131.75 Aligned_cols=79 Identities=24% Similarity=0.448 Sum_probs=72.1
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEE
Q 025517 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 90 (251)
.....++|||+|||+.+++++|+++|.+||.|..|.|+ +|||||+|.+.++|+.||+.|||..|+|+.|.|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999987 3899999999999999999999999999999999
Q ss_pred eccCCCc
Q 025517 91 FAKYGPN 97 (251)
Q Consensus 91 ~a~~~~~ 97 (251)
|++..+.
T Consensus 99 ~a~~~~~ 105 (108)
T 2jvo_A 99 YSKLPAK 105 (108)
T ss_dssp SCSCCC-
T ss_pred EecCCCC
Confidence 9986543
No 124
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.79 E-value=1.2e-19 Score=125.91 Aligned_cols=73 Identities=26% Similarity=0.504 Sum_probs=67.6
Q ss_pred CcEEEEecCCCCC------CHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCc-eE
Q 025517 15 TYSLLVLNITFRT------TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGR-EI 87 (251)
Q Consensus 15 ~~~l~V~nLp~~~------t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~-~l 87 (251)
+++|||+|||+.+ ++++|+++|.+||+|..|.|+ ..+|.++|||||+|.+.++|+.||+.|||..|+|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 789999999999999999987 35788999999999999999999999999999999 88
Q ss_pred EE
Q 025517 88 TV 89 (251)
Q Consensus 88 ~v 89 (251)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 125
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.79 E-value=5.3e-19 Score=126.92 Aligned_cols=78 Identities=17% Similarity=0.438 Sum_probs=71.0
Q ss_pred CCCCCCcEEEEecCCC-CCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEE
Q 025517 10 PDIRDTYSLLVLNITF-RTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (251)
Q Consensus 10 ~~~~~~~~l~V~nLp~-~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~ 88 (251)
....+.++|||+|||+ .+++++|.++|.+||.|..|.|. +|||||+|.+.++|+.||+.|||..|+|+.|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3445688999999998 99999999999999999999984 38999999999999999999999999999999
Q ss_pred EEeccCC
Q 025517 89 VQFAKYG 95 (251)
Q Consensus 89 v~~a~~~ 95 (251)
|+|++..
T Consensus 89 V~~a~~~ 95 (97)
T 2xnq_A 89 LEVSSSN 95 (97)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 9999754
No 126
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.79 E-value=3.2e-20 Score=134.07 Aligned_cols=82 Identities=26% Similarity=0.362 Sum_probs=74.3
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025517 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
...++|||+|||+.+++++|+++|.+||.|.. .++.+..++.++|||||+|.+.++|++||+ ||+..|.|+.|.|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 45789999999999999999999999999877 555666678889999999999999999999 9999999999999999
Q ss_pred cCCC
Q 025517 93 KYGP 96 (251)
Q Consensus 93 ~~~~ 96 (251)
++..
T Consensus 93 ~~~~ 96 (101)
T 1fj7_A 93 KGRD 96 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7654
No 127
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.5e-19 Score=133.02 Aligned_cols=77 Identities=23% Similarity=0.308 Sum_probs=71.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025517 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
...++|||+|||+.+++++|+++|.+||.|..|.|+.. +|||||+|.+.++|+.||+.|||..|.|+.|.|+|+
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG------GITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS------SSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34679999999999999999999999999999988753 489999999999999999999999999999999999
Q ss_pred cCC
Q 025517 93 KYG 95 (251)
Q Consensus 93 ~~~ 95 (251)
+..
T Consensus 82 ~~~ 84 (111)
T 1whx_A 82 PIG 84 (111)
T ss_dssp ETT
T ss_pred CCC
Confidence 753
No 128
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.79 E-value=1.6e-19 Score=129.06 Aligned_cols=82 Identities=27% Similarity=0.510 Sum_probs=73.4
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEE
Q 025517 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (251)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v 89 (251)
....+..+|||+|||+.+++++|+++|.+||.|..| ..++.++|||||+|.+.++|+.||+.|||..|+|+.|.|
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 85 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 85 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 344567899999999999999999999999988766 246788999999999999999999999999999999999
Q ss_pred EeccCCC
Q 025517 90 QFAKYGP 96 (251)
Q Consensus 90 ~~a~~~~ 96 (251)
.|+.+..
T Consensus 86 ~~a~~~~ 92 (96)
T 1fjc_A 86 YYTGEKG 92 (96)
T ss_dssp EECSSSC
T ss_pred EEcCCCC
Confidence 9997643
No 129
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.7e-19 Score=128.13 Aligned_cols=80 Identities=18% Similarity=0.463 Sum_probs=71.1
Q ss_pred CCCCCcEEEEecCCC-CCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEE
Q 025517 11 DIRDTYSLLVLNITF-RTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~-~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v 89 (251)
...+.++|||+|||+ .+++++|.++|.+||.|..|.|. +|||||+|.+.++|+.||+.||+..|.|+.|.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345688999999998 99999999999999999999985 389999999999999999999999999999999
Q ss_pred EeccCCCch
Q 025517 90 QFAKYGPNA 98 (251)
Q Consensus 90 ~~a~~~~~~ 98 (251)
+|++.....
T Consensus 78 ~~a~~~~~~ 86 (96)
T 2kvi_A 78 EVSSSNARP 86 (96)
T ss_dssp EEEECCCC-
T ss_pred EEcCcCCCC
Confidence 999865543
No 130
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=1.6e-19 Score=130.40 Aligned_cols=76 Identities=32% Similarity=0.531 Sum_probs=71.5
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccCC
Q 025517 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG 95 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 95 (251)
++|||+|||+.+++++|+++|.+||+|..|.|+.+ .+|||||+|.+.++|++||+.||+..|+|+.|.|.|++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999876 5599999999999999999999999999999999999875
Q ss_pred C
Q 025517 96 P 96 (251)
Q Consensus 96 ~ 96 (251)
+
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 131
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.79 E-value=5e-19 Score=130.80 Aligned_cols=79 Identities=28% Similarity=0.501 Sum_probs=73.3
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025517 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
..+.+|||+|||+.+++++|.++|.+||.|..|.|+.+ +..+|||||+|.+.++|+.||+.|||..|+|+.|.|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 45789999999999999999999999999999999864 445799999999999999999999999999999999999
Q ss_pred cC
Q 025517 93 KY 94 (251)
Q Consensus 93 ~~ 94 (251)
.+
T Consensus 83 ~~ 84 (115)
T 3lqv_A 83 NA 84 (115)
T ss_dssp CH
T ss_pred cC
Confidence 75
No 132
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=7.1e-21 Score=141.11 Aligned_cols=87 Identities=25% Similarity=0.392 Sum_probs=80.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeE--------EEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccC
Q 025517 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVD--------VFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD 83 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~ 83 (251)
..+..+|||+|||+.+++++|+++|.+||.|.. |.|+.++.++..+|||||+|.+.++|++||+.||+..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345789999999999999999999999999998 889888888999999999999999999999999999999
Q ss_pred CceEEEEeccCCCch
Q 025517 84 GREITVQFAKYGPNA 98 (251)
Q Consensus 84 g~~l~v~~a~~~~~~ 98 (251)
|+.|.|.|++..+..
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999866543
No 133
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.79 E-value=8.3e-20 Score=124.58 Aligned_cols=75 Identities=21% Similarity=0.409 Sum_probs=71.5
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025517 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
+|||+|||+.+++++|+++|.+||+|..|.|+.++.++.++|||||+|.+.++|+.||+ +++..|.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999998889999999999999999999999 5889999999999886
No 134
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.5e-19 Score=127.36 Aligned_cols=78 Identities=26% Similarity=0.366 Sum_probs=69.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCC-eeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCC-CccCCceEEE
Q 025517 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGK-VVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG-RVVDGREITV 89 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~-i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g-~~i~g~~l~v 89 (251)
....++|||+|||+.+++++|+++|.+||. |..+.+. .+|||||+|.+.++|++||+.||+ ..|+|+.|.|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 345789999999999999999999999999 6656553 248999999999999999999999 9999999999
Q ss_pred EeccCCC
Q 025517 90 QFAKYGP 96 (251)
Q Consensus 90 ~~a~~~~ 96 (251)
+|+++..
T Consensus 78 ~~a~~~~ 84 (93)
T 2cqh_A 78 DYSVSKK 84 (93)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 9998653
No 135
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.7e-19 Score=131.35 Aligned_cols=79 Identities=19% Similarity=0.251 Sum_probs=70.4
Q ss_pred CCCCcEEEEecCCCC-CCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhC--CCccCCceEE
Q 025517 12 IRDTYSLLVLNITFR-TTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD--GRVVDGREIT 88 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~-~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~--g~~i~g~~l~ 88 (251)
..+.++|||+|||++ +++++|.++|.+||+|..|.|+.. +|||||+|++.++|+.||+.|+ +..|.|++|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 445789999999998 999999999999999999999754 4999999999999999999886 4569999999
Q ss_pred EEeccCCC
Q 025517 89 VQFAKYGP 96 (251)
Q Consensus 89 v~~a~~~~ 96 (251)
|+|++...
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99997543
No 136
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=6.2e-19 Score=126.02 Aligned_cols=82 Identities=23% Similarity=0.287 Sum_probs=73.4
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEE-EEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEE
Q 025517 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDV-FIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v-~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v 89 (251)
.....++|||+|||+.+++++|+++|.+||.|..| .|+.++.+ +.|||+|.+.++|+.||..|||..|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 86 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKV 86 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34457899999999999999999999999999999 57776544 45999999999999999999999999999999
Q ss_pred EeccCCC
Q 025517 90 QFAKYGP 96 (251)
Q Consensus 90 ~~a~~~~ 96 (251)
.|+.+..
T Consensus 87 ~~a~~~~ 93 (96)
T 2e44_A 87 AYIPDEM 93 (96)
T ss_dssp EECCCCC
T ss_pred EEcCccc
Confidence 9998763
No 137
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=3.2e-19 Score=128.81 Aligned_cols=75 Identities=24% Similarity=0.422 Sum_probs=70.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEecc
Q 025517 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 93 (251)
..++|||+|||..+++++|+++|.+||.|..|.|+. .+|||||+|.+.++|+.||..|||..|+|+.|.|.|++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 468999999999999999999999999999999874 34999999999999999999999999999999999987
Q ss_pred C
Q 025517 94 Y 94 (251)
Q Consensus 94 ~ 94 (251)
+
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 138
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.78 E-value=1.4e-19 Score=138.22 Aligned_cols=84 Identities=19% Similarity=0.243 Sum_probs=74.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEE
Q 025517 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 90 (251)
.....++|||+|||+.+|+++|+++|.+|| |+.|.|+.++. +.++|||||+|.+.++|++|| .||+..|+|+.|.|.
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELF 118 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEE
Confidence 345678999999999999999999999999 77999999875 999999999999999999999 689999999999999
Q ss_pred eccCCCc
Q 025517 91 FAKYGPN 97 (251)
Q Consensus 91 ~a~~~~~ 97 (251)
++.....
T Consensus 119 ~a~~~~~ 125 (139)
T 2hgn_A 119 LNSTTGA 125 (139)
T ss_dssp ECCCSCC
T ss_pred ECCCCCC
Confidence 9876544
No 139
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=124.54 Aligned_cols=78 Identities=18% Similarity=0.231 Sum_probs=69.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEe
Q 025517 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 91 (251)
.....+|||+|||+.+++++|+++|.+||.|..| +.+..++. ||||+|.+.++|++||+ ||+..|+|+.|.|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 4457799999999999999999999999999988 34444554 99999999999999999 999999999999998
Q ss_pred ccCC
Q 025517 92 AKYG 95 (251)
Q Consensus 92 a~~~ 95 (251)
+...
T Consensus 79 a~~~ 82 (94)
T 2e5g_A 79 REQK 82 (94)
T ss_dssp SCCS
T ss_pred CCcC
Confidence 8644
No 140
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.78 E-value=6e-19 Score=129.40 Aligned_cols=75 Identities=27% Similarity=0.474 Sum_probs=69.5
Q ss_pred CCCcEEEEecCCCC-CCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEe
Q 025517 13 RDTYSLLVLNITFR-TTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (251)
Q Consensus 13 ~~~~~l~V~nLp~~-~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 91 (251)
...++|||+|||+. +++++|+++|.+||.|..|.| .+|||||+|.+.++|+.||+.||+..|+|+.|.|+|
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34589999999999 999999999999999999988 248999999999999999999999999999999999
Q ss_pred ccCC
Q 025517 92 AKYG 95 (251)
Q Consensus 92 a~~~ 95 (251)
++..
T Consensus 97 a~~~ 100 (110)
T 1wf1_A 97 AGEP 100 (110)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9743
No 141
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.77 E-value=1.3e-19 Score=139.18 Aligned_cols=87 Identities=25% Similarity=0.335 Sum_probs=73.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEE--EccC---CCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCce
Q 025517 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVF--IPRD---RRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~--i~~~---~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~ 86 (251)
..+.++|||+|||+.+|+++|.++|.+||.|..|. ++.+ ..+|..+|||||+|.+.++|++||..|||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 45678999999999999999999999999987641 1111 136888999999999999999999999999999999
Q ss_pred EEEEeccCCCch
Q 025517 87 ITVQFAKYGPNA 98 (251)
Q Consensus 87 l~v~~a~~~~~~ 98 (251)
|.|.||+.....
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999865443
No 142
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.77 E-value=1.5e-18 Score=141.97 Aligned_cols=86 Identities=23% Similarity=0.412 Sum_probs=79.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEe
Q 025517 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 91 (251)
..+.++|||+|||+.+|+++|.++|.+||+|..|.|+.++.++.++|||||+|.+.++|+.||+.||+..+.|+.|.|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCc
Q 025517 92 AKYGPN 97 (251)
Q Consensus 92 a~~~~~ 97 (251)
+.....
T Consensus 92 ~~~~~~ 97 (213)
T 4f02_A 92 SQRDPS 97 (213)
T ss_dssp CCCCTH
T ss_pred cccccc
Confidence 876543
No 143
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.77 E-value=3.5e-19 Score=128.85 Aligned_cols=84 Identities=27% Similarity=0.402 Sum_probs=76.7
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEE
Q 025517 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 90 (251)
.....++|||+|||+.+++++|.++|.+||.|..|.|+.+. +|..+|||||+|.+.++|+.||+ ++..|+|..|.|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~ 81 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLG 81 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEE
Confidence 34456899999999999999999999999999999999997 89999999999999999999999 9999999999999
Q ss_pred eccCCCc
Q 025517 91 FAKYGPN 97 (251)
Q Consensus 91 ~a~~~~~ 97 (251)
++.....
T Consensus 82 ~a~~~~~ 88 (102)
T 2xs2_A 82 PAIRKQN 88 (102)
T ss_dssp EEEECC-
T ss_pred ECCcCcc
Confidence 9875543
No 144
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=121.70 Aligned_cols=76 Identities=28% Similarity=0.390 Sum_probs=66.9
Q ss_pred CCCCcE-EEEecCCCCCCHHH----HHHHhhcC-CCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCc
Q 025517 12 IRDTYS-LLVLNITFRTTADD----LFPLFEKY-GKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGR 85 (251)
Q Consensus 12 ~~~~~~-l~V~nLp~~~t~~~----L~~~f~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~ 85 (251)
..+..| |||+|||+.+++++ |.++|.+| |+|..| ++ |||||+|.+.++|+.||+.|||..|.|+
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr 74 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGN 74 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSS
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 344666 99999999999988 55899999 599988 23 8999999999999999999999999999
Q ss_pred eEEEEeccCCCc
Q 025517 86 EITVQFAKYGPN 97 (251)
Q Consensus 86 ~l~v~~a~~~~~ 97 (251)
+|.|.||+....
T Consensus 75 ~i~v~~A~~~sd 86 (96)
T 2diu_A 75 RIIVSFTPKNRE 86 (96)
T ss_dssp CCEEESSCCSCC
T ss_pred eEEEEecCCCcc
Confidence 999999987654
No 145
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.6e-18 Score=121.85 Aligned_cols=79 Identities=28% Similarity=0.431 Sum_probs=70.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEE
Q 025517 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 90 (251)
...+.++|||+|| .+++++|+++|.+||+|..|.|.. .+|||||+|.+.++|++||+.||+..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP------PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3456789999996 899999999999999999999853 44899999999999999999999999999999999
Q ss_pred eccCCCc
Q 025517 91 FAKYGPN 97 (251)
Q Consensus 91 ~a~~~~~ 97 (251)
|+...+.
T Consensus 83 ~a~~~~~ 89 (97)
T 1x5p_A 83 IARKQPM 89 (97)
T ss_dssp CCSSCCC
T ss_pred ECCCCCC
Confidence 9986543
No 146
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.77 E-value=1.9e-18 Score=133.71 Aligned_cols=81 Identities=27% Similarity=0.428 Sum_probs=74.4
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEE
Q 025517 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (251)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v 89 (251)
......++|||+|||+.+++++|.++|.+||.|..|.|+.+ ++|||||+|.+.++|+.||..|||..|+|+.|.|
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 142 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRV 142 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 33456789999999999999999999999999999999876 4599999999999999999999999999999999
Q ss_pred EeccCC
Q 025517 90 QFAKYG 95 (251)
Q Consensus 90 ~~a~~~ 95 (251)
.|+++.
T Consensus 143 ~~a~~~ 148 (150)
T 2i2y_A 143 ELSNGE 148 (150)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 999764
No 147
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=3.4e-18 Score=127.82 Aligned_cols=76 Identities=25% Similarity=0.343 Sum_probs=67.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceE-EEEEEecHHHHHHHHhhhCCCccCC--ceEEEEe
Q 025517 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGF-AFVRYKYADEAQKAVDRLDGRVVDG--REITVQF 91 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~Ai~~l~g~~i~g--~~l~v~~ 91 (251)
...|||+||++.+++++|.++|.+||+|..|.|+.. . || |||+|.+.++|+.||++|||..|.| ..|.|+|
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~----Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--N----GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--S----SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--C----CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 345689999999999999999999999999998652 1 76 9999999999999999999999987 6899999
Q ss_pred ccCCC
Q 025517 92 AKYGP 96 (251)
Q Consensus 92 a~~~~ 96 (251)
|++..
T Consensus 99 Ak~~~ 103 (124)
T 2e5i_A 99 ARPTR 103 (124)
T ss_dssp CSCSC
T ss_pred ecCCc
Confidence 98653
No 148
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.77 E-value=3.5e-18 Score=133.21 Aligned_cols=83 Identities=28% Similarity=0.550 Sum_probs=79.0
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEE
Q 025517 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 90 (251)
...+.++|||+|||..+++++|.++|.+||.|..|.|+.+..+|.++|||||+|.+.++|++||..|||..|+|+.|.|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 44567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecc
Q 025517 91 FAK 93 (251)
Q Consensus 91 ~a~ 93 (251)
||+
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 986
No 149
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.77 E-value=9.9e-19 Score=131.21 Aligned_cols=80 Identities=23% Similarity=0.349 Sum_probs=72.5
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCee--EEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEE
Q 025517 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVV--DVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~--~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~ 88 (251)
+....++|||+|||+.+|+++|+++|.+| .|+ .|.|+.++. |.++|||||+|.+.++|++||+ +++..|+|+.|.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 44567899999999999999999999999 566 899998876 9999999999999999999999 477999999999
Q ss_pred EEecc
Q 025517 89 VQFAK 93 (251)
Q Consensus 89 v~~a~ 93 (251)
|.++.
T Consensus 115 V~~a~ 119 (126)
T 2hgm_A 115 VFKSS 119 (126)
T ss_dssp CEEEC
T ss_pred EEECC
Confidence 98885
No 150
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=9.2e-19 Score=128.69 Aligned_cols=79 Identities=25% Similarity=0.449 Sum_probs=70.6
Q ss_pred CCCcEEEE--ecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCcc-----CCc
Q 025517 13 RDTYSLLV--LNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV-----DGR 85 (251)
Q Consensus 13 ~~~~~l~V--~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i-----~g~ 85 (251)
.++.+||| +||++.+++++|+++|.+||+|..|.|+.+ +|||||+|.+.++|++||+.|||.+| .|.
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 45788999 779999999999999999999999988643 48999999999999999999999988 688
Q ss_pred eEEEEeccCCCc
Q 025517 86 EITVQFAKYGPN 97 (251)
Q Consensus 86 ~l~v~~a~~~~~ 97 (251)
+|.|.|++..+.
T Consensus 97 ~l~v~~a~~~p~ 108 (114)
T 2cq2_A 97 TLYLNFVEKVQW 108 (114)
T ss_dssp ECEEEEESCCCC
T ss_pred EEEEEecccCcc
Confidence 999999976544
No 151
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.76 E-value=2.7e-18 Score=133.73 Aligned_cols=80 Identities=24% Similarity=0.360 Sum_probs=71.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCC--ceEEE
Q 025517 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG--REITV 89 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g--~~l~v 89 (251)
.....+|||+||++.+|+++|.++|.+||+|..|.|+... .+|||||+|.+.++|+.||+.|||..|.| ..|.|
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 3445679999999999999999999999999999986432 45899999999999999999999999965 99999
Q ss_pred EeccCC
Q 025517 90 QFAKYG 95 (251)
Q Consensus 90 ~~a~~~ 95 (251)
+|+++.
T Consensus 119 ~~Ak~~ 124 (164)
T 1sjr_A 119 DFSKLT 124 (164)
T ss_dssp EECSSS
T ss_pred EEecCC
Confidence 999865
No 152
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=8e-19 Score=131.31 Aligned_cols=81 Identities=17% Similarity=0.279 Sum_probs=73.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCe----eEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEE
Q 025517 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKV----VDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i----~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~ 88 (251)
.+.++|||+|||+.+|+++|+++|.+||.| ..|.|+.+ .+|.++|||||+|.+.++|++||+. |+..|+|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 457899999999999999999999999975 68888887 4899999999999999999999995 99999999999
Q ss_pred EEeccCC
Q 025517 89 VQFAKYG 95 (251)
Q Consensus 89 v~~a~~~ 95 (251)
|..+...
T Consensus 99 V~~a~~~ 105 (123)
T 2dha_A 99 LFRSTAA 105 (123)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9988643
No 153
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.76 E-value=5.2e-18 Score=132.33 Aligned_cols=82 Identities=28% Similarity=0.492 Sum_probs=78.2
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccC
Q 025517 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 94 (251)
.++|||+|||+.+++++|.++|..||+|..|.|+.++.+|.++|||||+|.+.++|+.||+.|||..|.|..|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57899999999999999999999999999999999988999999999999999999999999999999999999999986
Q ss_pred CC
Q 025517 95 GP 96 (251)
Q Consensus 95 ~~ 96 (251)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 154
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.75 E-value=1.8e-18 Score=121.76 Aligned_cols=76 Identities=18% Similarity=0.365 Sum_probs=69.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEecc
Q 025517 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 93 (251)
..++|||+|||+.+++++|+++|.+| .|..|.|. ..+|||||+|.+.++|+.||+.|||..|+|+.|.|+|++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46789999999999999999999999 99999884 456999999999999999999999999999999999997
Q ss_pred CCC
Q 025517 94 YGP 96 (251)
Q Consensus 94 ~~~ 96 (251)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 543
No 155
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=2.1e-18 Score=127.39 Aligned_cols=80 Identities=18% Similarity=0.277 Sum_probs=68.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCC---CCcceEEEEEEecHHHHHHHHhhhCCCccCCceE
Q 025517 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRT---GDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l 87 (251)
.....++|||+|||+.+++++|+++|.+||+|. +.++.+..+ |.++|||||+|.+.++|++||+.|+ .|+|..|
T Consensus 4 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~ 80 (114)
T 2dnl_A 4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLY 80 (114)
T ss_dssp SSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEE
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEE
Confidence 345678999999999999999999999999999 888877766 7899999999999999999999884 3677777
Q ss_pred EEEecc
Q 025517 88 TVQFAK 93 (251)
Q Consensus 88 ~v~~a~ 93 (251)
.|..+.
T Consensus 81 ~~~~~~ 86 (114)
T 2dnl_A 81 LCVSSP 86 (114)
T ss_dssp EEECCS
T ss_pred EeccCC
Confidence 666554
No 156
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.75 E-value=5.7e-18 Score=137.92 Aligned_cols=85 Identities=27% Similarity=0.454 Sum_probs=80.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025517 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
....+|||+|||..+++++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|++||+.|||..|+|+.|.|.|+
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 34579999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCCc
Q 025517 93 KYGPN 97 (251)
Q Consensus 93 ~~~~~ 97 (251)
...+.
T Consensus 203 ~~~~~ 207 (216)
T 2qfj_A 203 VTPPM 207 (216)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 87654
No 157
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.75 E-value=3.6e-18 Score=133.60 Aligned_cols=83 Identities=30% Similarity=0.503 Sum_probs=78.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEecc
Q 025517 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 93 (251)
+.++|||+|||+.+++++|.++|.+||+|..|.|+.++.+|.++|||||+|.+.++|+.||+.|++..|.|..|.|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 36799999999999999999999999999999999988889999999999999999999999999999999999999997
Q ss_pred CCC
Q 025517 94 YGP 96 (251)
Q Consensus 94 ~~~ 96 (251)
+..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 644
No 158
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.75 E-value=3.3e-18 Score=126.88 Aligned_cols=80 Identities=19% Similarity=0.233 Sum_probs=72.8
Q ss_pred cEEEEecC----CCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEec----HHH----HHHHHh--hhCCCc
Q 025517 16 YSLLVLNI----TFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADE----AQKAVD--RLDGRV 81 (251)
Q Consensus 16 ~~l~V~nL----p~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~----A~~Ai~--~l~g~~ 81 (251)
..|||+|| |+.+++++|+++|..||+|..|.++.|+.||.++|||||+|.+ .++ |..||. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999999999999999999996 333 788888 789999
Q ss_pred cCCceEEEEeccCC
Q 025517 82 VDGREITVQFAKYG 95 (251)
Q Consensus 82 i~g~~l~v~~a~~~ 95 (251)
|+|..|.|++...+
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999998754
No 159
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.74 E-value=8.7e-18 Score=126.24 Aligned_cols=78 Identities=26% Similarity=0.427 Sum_probs=70.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceE-EEEEEecHHHHHHHHhhhCCCccCC--ceEEE
Q 025517 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGF-AFVRYKYADEAQKAVDRLDGRVVDG--REITV 89 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~Ai~~l~g~~i~g--~~l~v 89 (251)
..-..|||+||++.+|+++|.++|.+||+|..|.|+... +|| |||+|.+.++|+.||+.|||..|.| ..|.|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 345678899999999999999999999999999887532 477 9999999999999999999999988 89999
Q ss_pred EeccCC
Q 025517 90 QFAKYG 95 (251)
Q Consensus 90 ~~a~~~ 95 (251)
+|++..
T Consensus 101 ~~ak~~ 106 (130)
T 3zzy_A 101 DFSKLT 106 (130)
T ss_dssp EECSCS
T ss_pred EecCCC
Confidence 999865
No 160
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.74 E-value=8.6e-18 Score=134.80 Aligned_cols=87 Identities=31% Similarity=0.499 Sum_probs=78.8
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEE
Q 025517 9 PPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (251)
Q Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~ 88 (251)
+....+.++|||+|||+.+|+++|.++|..||.|..|.|+.++.+|.++|||||+|.+.++|++||+. ++..|.|..|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~ 85 (196)
T 1l3k_A 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVE 85 (196)
T ss_dssp -CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEee
Confidence 44556788999999999999999999999999999999999988999999999999999999999985 89999999999
Q ss_pred EEeccCCC
Q 025517 89 VQFAKYGP 96 (251)
Q Consensus 89 v~~a~~~~ 96 (251)
|.++....
T Consensus 86 v~~~~~~~ 93 (196)
T 1l3k_A 86 PKRAVSRE 93 (196)
T ss_dssp EEECCC--
T ss_pred eecccCcc
Confidence 99987543
No 161
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.74 E-value=1e-17 Score=134.56 Aligned_cols=84 Identities=23% Similarity=0.380 Sum_probs=79.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025517 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
...++|||+|||+.+++++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|+.||+.|||..|+|+.|.|.|+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 55789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCC
Q 025517 93 KYGP 96 (251)
Q Consensus 93 ~~~~ 96 (251)
.+..
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 162
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.74 E-value=1.1e-17 Score=131.47 Aligned_cols=80 Identities=23% Similarity=0.370 Sum_probs=76.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025517 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
....+|||+|||+.+++++|.++|.+||.|..|.|+.++.+|.++|||||+|.+.++|++||+.|||..|+|+.|.|.||
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999999997
No 163
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.73 E-value=1.2e-17 Score=133.99 Aligned_cols=85 Identities=31% Similarity=0.392 Sum_probs=75.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025517 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
....+|||+|||+.+++++|.++|..||.|..|.|+.+..+|.++|||||+|.+.++|++||.. ++..|+|+.|.|.|+
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 3468999999999999999999999999999999999988999999999999999999999996 799999999999999
Q ss_pred cCCCch
Q 025517 93 KYGPNA 98 (251)
Q Consensus 93 ~~~~~~ 98 (251)
.+....
T Consensus 181 ~~k~~~ 186 (196)
T 1l3k_A 181 LSKQEM 186 (196)
T ss_dssp C-----
T ss_pred CChhHh
Confidence 876544
No 164
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.73 E-value=6.8e-18 Score=132.02 Aligned_cols=80 Identities=26% Similarity=0.399 Sum_probs=76.3
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccC
Q 025517 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 94 (251)
..+|||+|||+.+++++|.++|.+||.|..|.|+.++.+|.++|||||+|.+.++|++||+ |++..|+|+.|.|.||.+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 5689999999999999999999999999999999998889999999999999999999998 899999999999999976
Q ss_pred C
Q 025517 95 G 95 (251)
Q Consensus 95 ~ 95 (251)
.
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 165
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.73 E-value=9.3e-18 Score=118.48 Aligned_cols=77 Identities=34% Similarity=0.493 Sum_probs=62.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCC--ccCCceEE
Q 025517 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR--VVDGREIT 88 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~--~i~g~~l~ 88 (251)
.....++|||+|||+.+|+++|+++|.+||.|..|.|+.+ ++|||||+|.+.++|++ |++. .+.|..|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3456789999999999999999999999999999999864 56999999999999984 4444 45699999
Q ss_pred EEeccCCC
Q 025517 89 VQFAKYGP 96 (251)
Q Consensus 89 v~~a~~~~ 96 (251)
|.+|.+..
T Consensus 78 v~~a~~k~ 85 (89)
T 3d2w_A 78 ISNAEPKH 85 (89)
T ss_dssp EEECC---
T ss_pred EEEcCCCC
Confidence 99997653
No 166
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.73 E-value=1.3e-17 Score=124.41 Aligned_cols=79 Identities=28% Similarity=0.428 Sum_probs=70.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEe
Q 025517 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 91 (251)
....++|||+|| .+++++|+++|.+||+|..|.|.. .+|||||+|.+.++|++||+.|||..|+|+.|.|.|
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~------~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP------PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET------TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345789999996 699999999999999999998863 459999999999999999999999999999999999
Q ss_pred ccCCCch
Q 025517 92 AKYGPNA 98 (251)
Q Consensus 92 a~~~~~~ 98 (251)
++..+..
T Consensus 108 a~~~~~~ 114 (121)
T 2bz2_A 108 ARKQPML 114 (121)
T ss_dssp CCSSCC-
T ss_pred eCCCCCC
Confidence 9876543
No 167
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.72 E-value=9.4e-18 Score=137.14 Aligned_cols=82 Identities=18% Similarity=0.453 Sum_probs=75.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEecc
Q 025517 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 93 (251)
...+|||+|||+.+++++|.++|.+||.|..|.|+.+. +..+|||||+|.+.++|++||+.|||..|+|+.|.|.||+
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 35689999999999999999999999999999998874 4478999999999999999999999999999999999998
Q ss_pred CCCc
Q 025517 94 YGPN 97 (251)
Q Consensus 94 ~~~~ 97 (251)
+...
T Consensus 180 ~~~~ 183 (213)
T 4f02_A 180 SRKE 183 (213)
T ss_dssp CHHH
T ss_pred CCcc
Confidence 6543
No 168
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.72 E-value=3.9e-17 Score=127.66 Aligned_cols=81 Identities=38% Similarity=0.594 Sum_probs=76.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCC--ceEEE
Q 025517 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG--REITV 89 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g--~~l~v 89 (251)
.....+|||+|||..+++++|.++|.+||.|..|.|+.+..++.++|||||+|.+.++|+.||+.|||..|.| .+|.|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 3457899999999999999999999999999999999988889999999999999999999999999999987 99999
Q ss_pred Eec
Q 025517 90 QFA 92 (251)
Q Consensus 90 ~~a 92 (251)
.||
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 169
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.72 E-value=1.6e-17 Score=116.36 Aligned_cols=72 Identities=29% Similarity=0.560 Sum_probs=66.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcC----C-------CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCc
Q 025517 13 RDTYSLLVLNITFRTTADDLFPLFEKY----G-------KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRV 81 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~----G-------~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 81 (251)
.+.++|||+|||+.+++++|+++|.+| | .|..|.+..+ +|||||+|.+.++|++|| .||+..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 457899999999999999999999999 8 8999998765 499999999999999999 899999
Q ss_pred cCCceEEEEe
Q 025517 82 VDGREITVQF 91 (251)
Q Consensus 82 i~g~~l~v~~ 91 (251)
|+|+.|.|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999974
No 170
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.71 E-value=2.8e-17 Score=133.75 Aligned_cols=82 Identities=24% Similarity=0.389 Sum_probs=74.9
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccC
Q 025517 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 94 (251)
.++|||+|||+.+++++|+++|.+||.|..|.|+.+..++..+|||||+|.+.++|+.||+.||+..|.|+.|.|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 47899999999999999999999999999999999888899999999999999999999999999999999999999875
Q ss_pred CC
Q 025517 95 GP 96 (251)
Q Consensus 95 ~~ 96 (251)
..
T Consensus 108 ~~ 109 (216)
T 2qfj_A 108 IG 109 (216)
T ss_dssp CG
T ss_pred cc
Confidence 54
No 171
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.71 E-value=4.9e-17 Score=118.29 Aligned_cols=82 Identities=27% Similarity=0.272 Sum_probs=72.4
Q ss_pred CCCcEEEEecCCC-----CCCHHHHHHHhhcCCCeeEEEEccCCCC-CCcceEEEEEEecHHHHHHHHhhhCCCccCCce
Q 025517 13 RDTYSLLVLNITF-----RTTADDLFPLFEKYGKVVDVFIPRDRRT-GDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (251)
Q Consensus 13 ~~~~~l~V~nLp~-----~~t~~~L~~~f~~~G~i~~v~i~~~~~~-g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~ 86 (251)
.++.+|+|.||.. +.++++|+++|.+||.|..|.|+.++.+ +.++|||||+|.+.++|++|++.|||.+|+|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3578999999963 2378999999999999999999887543 678999999999999999999999999999999
Q ss_pred EEEEeccC
Q 025517 87 ITVQFAKY 94 (251)
Q Consensus 87 l~v~~a~~ 94 (251)
|.|.|+..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999964
No 172
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.71 E-value=1.5e-17 Score=137.59 Aligned_cols=83 Identities=18% Similarity=0.326 Sum_probs=71.2
Q ss_pred CCCCCcEEEEecCCCCC---------CHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCc
Q 025517 11 DIRDTYSLLVLNITFRT---------TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRV 81 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~---------t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 81 (251)
......+|||+||+..+ ++++|.++|.+||+|..|.|+.+ +|||||+|.+.++|+.||++|+|..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 35668899999999998 79999999999999999999864 4999999999999999999999999
Q ss_pred c------------CCceEEEEeccCCCchh
Q 025517 82 V------------DGREITVQFAKYGPNAE 99 (251)
Q Consensus 82 i------------~g~~l~v~~a~~~~~~~ 99 (251)
| .|..|.|.||+..++..
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~pnp~ 233 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDPDPA 233 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC------
T ss_pred EeccccccccccCCCCEEEEEEccCCCCHH
Confidence 9 89999999998776544
No 173
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.71 E-value=3.2e-17 Score=133.38 Aligned_cols=77 Identities=23% Similarity=0.380 Sum_probs=71.5
Q ss_pred CCcEEEEecCC-CCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025517 14 DTYSLLVLNIT-FRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 14 ~~~~l~V~nLp-~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
++++|||+||| +.+++++|.++|.+||.|..|.|+.+. +|||||+|.+.++|+.||+.|||..|.|+.|.|.|+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46899999999 899999999999999999999998653 489999999999999999999999999999999999
Q ss_pred cCC
Q 025517 93 KYG 95 (251)
Q Consensus 93 ~~~ 95 (251)
+..
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 754
No 174
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.71 E-value=3.6e-17 Score=127.42 Aligned_cols=80 Identities=24% Similarity=0.371 Sum_probs=73.9
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccCC
Q 025517 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG 95 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 95 (251)
.+|||+|||..+++++|.++|.+||+|..|.|+.++ ++..+|||||+|.+.++|+.||+.|||..|.|..|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 479999999999999999999999999999999886 5778999999999999999999999999999999999999754
Q ss_pred C
Q 025517 96 P 96 (251)
Q Consensus 96 ~ 96 (251)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 3
No 175
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.70 E-value=6.2e-17 Score=126.18 Aligned_cols=80 Identities=35% Similarity=0.533 Sum_probs=74.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCce--EEEE
Q 025517 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE--ITVQ 90 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~--l~v~ 90 (251)
....+|||+|||..+++++|.++|.+||.|..|.|+.+..+|.++|||||+|.+.++|++||+.|||..|.|.. |.|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 45678999999999999999999999999999999998888999999999999999999999999999999964 8888
Q ss_pred ec
Q 025517 91 FA 92 (251)
Q Consensus 91 ~a 92 (251)
||
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 176
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.9e-17 Score=116.44 Aligned_cols=77 Identities=31% Similarity=0.470 Sum_probs=65.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEecc
Q 025517 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 93 (251)
+.++|||+|||+.+++++|+++|.+||+|..|.|+.+ ++|||||+|.+.++|++|+.. ...+.|..|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecC
Confidence 4689999999999999999999999999999999764 569999999999999865442 345699999999997
Q ss_pred CCCc
Q 025517 94 YGPN 97 (251)
Q Consensus 94 ~~~~ 97 (251)
+...
T Consensus 77 ~~~~ 80 (88)
T 1wf0_A 77 PKHN 80 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 177
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.70 E-value=3.7e-17 Score=135.07 Aligned_cols=79 Identities=32% Similarity=0.427 Sum_probs=73.4
Q ss_pred CCCCcEEEEecCCC-CCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEE
Q 025517 12 IRDTYSLLVLNITF-RTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (251)
Q Consensus 12 ~~~~~~l~V~nLp~-~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 90 (251)
..+.++|||+|||+ .+++++|+++|.+||.|..|.|+.+. +|||||+|.+.++|++||+.|||..|.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 35678999999999 99999999999999999999998764 5899999999999999999999999999999999
Q ss_pred eccCC
Q 025517 91 FAKYG 95 (251)
Q Consensus 91 ~a~~~ 95 (251)
|+...
T Consensus 106 ~a~~~ 110 (229)
T 2adc_A 106 LSKHQ 110 (229)
T ss_dssp CCSCC
T ss_pred EecCc
Confidence 99754
No 178
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.69 E-value=8.9e-17 Score=126.33 Aligned_cols=80 Identities=26% Similarity=0.400 Sum_probs=73.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccC---CceEEE
Q 025517 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD---GREITV 89 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~---g~~l~v 89 (251)
....+|||+|||+.+++++|+++|.+||.|..|.|+.+. +|.++|||||+|.+.++|+.||+.|||..+. |++|.|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 356899999999999999999999999999999998885 6889999999999999999999999998775 499999
Q ss_pred Eecc
Q 025517 90 QFAK 93 (251)
Q Consensus 90 ~~a~ 93 (251)
.||.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9983
No 179
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.69 E-value=1.4e-16 Score=135.27 Aligned_cols=85 Identities=25% Similarity=0.513 Sum_probs=76.8
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHH----HHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCc
Q 025517 10 PDIRDTYSLLVLNITFRTTADDLF----PLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGR 85 (251)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~L~----~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~ 85 (251)
++..+.++|||+|||+.+++++|+ ++|.+||.|..|.|+. ++..+|||||+|.+.++|+.||+.|||..|.|+
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 345668899999999999999966 8999999999998875 677889999999999999999999999999999
Q ss_pred eEEEEeccCCCc
Q 025517 86 EITVQFAKYGPN 97 (251)
Q Consensus 86 ~l~v~~a~~~~~ 97 (251)
.|.|.|++....
T Consensus 81 ~l~v~~a~~~~~ 92 (282)
T 3pgw_A 81 PMRIQYAKTDSD 92 (282)
T ss_pred EEEEEEeccCcc
Confidence 999999976543
No 180
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.68 E-value=1e-16 Score=126.02 Aligned_cols=82 Identities=28% Similarity=0.381 Sum_probs=74.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCC--CcceEEEEEEecHHHHHHHHhhhCCCccC---CceEE
Q 025517 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTG--DSRGFAFVRYKYADEAQKAVDRLDGRVVD---GREIT 88 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g--~~~g~afV~f~~~~~A~~Ai~~l~g~~i~---g~~l~ 88 (251)
+.++|||+|||+.+++++|.++|.+||+|..|.|+.+..++ .++|||||+|.+.++|+.||+.|++..+. +..|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46799999999999999999999999999999999988776 88999999999999999999999998775 67888
Q ss_pred EEeccCC
Q 025517 89 VQFAKYG 95 (251)
Q Consensus 89 v~~a~~~ 95 (251)
|.++...
T Consensus 82 ~~~~~~~ 88 (175)
T 3nmr_A 82 MKPADSE 88 (175)
T ss_dssp EEECGGG
T ss_pred Ecccccc
Confidence 8887643
No 181
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.68 E-value=7.8e-17 Score=127.08 Aligned_cols=79 Identities=28% Similarity=0.537 Sum_probs=72.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEe
Q 025517 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 91 (251)
.....+|||+|||..+++++|+++|.+||.|..| ..++.++|||||+|.+.++|++||..|||..|+|+.|.|.|
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 170 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 170 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEe
Confidence 3457899999999999999999999999988776 35788899999999999999999999999999999999999
Q ss_pred ccCC
Q 025517 92 AKYG 95 (251)
Q Consensus 92 a~~~ 95 (251)
|.+.
T Consensus 171 a~~k 174 (175)
T 1fje_B 171 TGEK 174 (175)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 9764
No 182
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.68 E-value=1.7e-16 Score=127.89 Aligned_cols=78 Identities=19% Similarity=0.294 Sum_probs=71.9
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEeccC
Q 025517 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 94 (251)
.++|||+|||+.+++++|.++|.+||.|..|.|+.+. ++.++|||||+|.+.++|+.||+.++ ..|+|+.|.|.|++.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 4799999999999999999999999999999998875 58899999999999999999998655 589999999999864
No 183
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.67 E-value=2e-16 Score=134.91 Aligned_cols=84 Identities=21% Similarity=0.409 Sum_probs=76.2
Q ss_pred CCCCcEEEEecCCCC-CCHHHHHHHhhcCCCeeEEEEccCCC-CCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEE
Q 025517 12 IRDTYSLLVLNITFR-TTADDLFPLFEKYGKVVDVFIPRDRR-TGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~-~t~~~L~~~f~~~G~i~~v~i~~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v 89 (251)
.....+|||+|||+. +++++|.++|.+||.|..|.|+.+.. +|.++|||||+|.+.++|+.|| .|||..|+|+.|.|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 345789999999999 99999999999999999999998765 4889999999999999999999 99999999999999
Q ss_pred EeccCCC
Q 025517 90 QFAKYGP 96 (251)
Q Consensus 90 ~~a~~~~ 96 (251)
.|+++++
T Consensus 286 ~~a~~k~ 292 (292)
T 2ghp_A 286 SLADKKP 292 (292)
T ss_dssp EECCCCC
T ss_pred EEecCCC
Confidence 9998653
No 184
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.67 E-value=8.8e-17 Score=125.62 Aligned_cols=79 Identities=30% Similarity=0.542 Sum_probs=73.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEecc
Q 025517 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 93 (251)
+.++|||+|||+.+|+++|.++|.+||.|..|.|+.++.+|.++|||||+|.+.++|+.||+. +..|.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 468999999999999999999999999999999999988999999999999999999999994 568899999998876
Q ss_pred C
Q 025517 94 Y 94 (251)
Q Consensus 94 ~ 94 (251)
+
T Consensus 80 ~ 80 (167)
T 2cjk_A 80 P 80 (167)
T ss_dssp C
T ss_pred c
Confidence 4
No 185
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.66 E-value=3e-16 Score=132.09 Aligned_cols=86 Identities=36% Similarity=0.599 Sum_probs=76.4
Q ss_pred CCCCCCCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCcc
Q 025517 3 HFGKSGPPDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV 82 (251)
Q Consensus 3 ~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i 82 (251)
++..++.......++|||+|||+.+|+++|.++|..||.|..|.|..+ +|||||+|.+.++|+.||..|||..|
T Consensus 10 ~~~~p~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i 83 (261)
T 3sde_A 10 SFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTIL 83 (261)
T ss_dssp CCCCTTCCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred ccCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEE
Confidence 444455555566789999999999999999999999999999998654 39999999999999999999999999
Q ss_pred CCceEEEEeccC
Q 025517 83 DGREITVQFAKY 94 (251)
Q Consensus 83 ~g~~l~v~~a~~ 94 (251)
.|+.|.|.|+.+
T Consensus 84 ~g~~l~v~~a~~ 95 (261)
T 3sde_A 84 KSRPLRIRFATH 95 (261)
T ss_dssp TTEECEEEECCC
T ss_pred CCceeEeeeccc
Confidence 999999999864
No 186
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=8.5e-16 Score=112.95 Aligned_cols=82 Identities=27% Similarity=0.417 Sum_probs=69.7
Q ss_pred CCCCCcEEEEecCCCCCC-----------HHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCC
Q 025517 11 DIRDTYSLLVLNITFRTT-----------ADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG 79 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t-----------~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 79 (251)
...++.+|+|.||..... +++|+++|.+||.|..|.| .+. .++|||||+|.+.++|++||+.|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 445688999999954332 5899999999999999966 332 3679999999999999999999999
Q ss_pred CccCCceEEEEeccCCC
Q 025517 80 RVVDGREITVQFAKYGP 96 (251)
Q Consensus 80 ~~i~g~~l~v~~a~~~~ 96 (251)
..|+|++|.|.|+.+..
T Consensus 87 ~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTT 103 (112)
T ss_dssp CEETTEECEEEECCSCC
T ss_pred CEECCcEEEEEEeCCCC
Confidence 99999999999997654
No 187
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.65 E-value=5.2e-16 Score=131.80 Aligned_cols=87 Identities=22% Similarity=0.318 Sum_probs=80.0
Q ss_pred CCCCcEEEEecCCCCC-CHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEE
Q 025517 12 IRDTYSLLVLNITFRT-TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~-t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 90 (251)
.....+|||+|||+.+ ++++|.++|..||.|..|.|+.+. +|.++|||||+|.+.++|+.||..|||..|+|+.|.|.
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 3567899999999995 999999999999999999998876 78899999999999999999999999999999999999
Q ss_pred eccCCCchh
Q 025517 91 FAKYGPNAE 99 (251)
Q Consensus 91 ~a~~~~~~~ 99 (251)
|+.+.....
T Consensus 260 ~a~~~~~~~ 268 (284)
T 3smz_A 260 FCAPGPPGR 268 (284)
T ss_dssp ECCSSSCHH
T ss_pred EecCCCccc
Confidence 998876543
No 188
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.64 E-value=7e-16 Score=130.89 Aligned_cols=76 Identities=25% Similarity=0.325 Sum_probs=70.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccC-CceEEEEe
Q 025517 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD-GREITVQF 91 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~-g~~l~v~~ 91 (251)
...++|||+|||..+++++|+++|.+||.|..|.|+.+. +|||||+|.+.++|++||+.|||..|. |+.|.|.|
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 356899999999999999999999999999999998653 489999999999999999999999999 99999999
Q ss_pred cc
Q 025517 92 AK 93 (251)
Q Consensus 92 a~ 93 (251)
++
T Consensus 280 ak 281 (282)
T 3pgw_A 280 AK 281 (282)
T ss_pred ec
Confidence 86
No 189
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.63 E-value=1.2e-15 Score=129.52 Aligned_cols=82 Identities=27% Similarity=0.435 Sum_probs=78.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEecc
Q 025517 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 93 (251)
...+|||+|||+.+++++|.++|..||.|..|.|+.+..+|.++|||||+|.+.++|+.||..|+|..|+|+.|.|.|+.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 46799999999999999999999999999999999988899999999999999999999999999999999999999997
Q ss_pred CC
Q 025517 94 YG 95 (251)
Q Consensus 94 ~~ 95 (251)
..
T Consensus 174 ~~ 175 (284)
T 3smz_A 174 AG 175 (284)
T ss_dssp GG
T ss_pred CC
Confidence 54
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.63 E-value=4.8e-16 Score=125.09 Aligned_cols=77 Identities=32% Similarity=0.455 Sum_probs=71.8
Q ss_pred CcEEEEecCCC-CCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEecc
Q 025517 15 TYSLLVLNITF-RTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (251)
Q Consensus 15 ~~~l~V~nLp~-~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 93 (251)
.++|||+|||+ .+++++|.++|.+||.|..|.|+.+. +|||||+|.+.++|+.||+.|||..|.|+.|.|.|+.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57999999999 99999999999999999999998764 4899999999999999999999999999999999997
Q ss_pred CCC
Q 025517 94 YGP 96 (251)
Q Consensus 94 ~~~ 96 (251)
...
T Consensus 78 ~~~ 80 (198)
T 1qm9_A 78 HQN 80 (198)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 191
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.62 E-value=6.7e-16 Score=125.56 Aligned_cols=77 Identities=12% Similarity=0.251 Sum_probs=68.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCe--eEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCc----eE
Q 025517 14 DTYSLLVLNITFRTTADDLFPLFEKYGKV--VDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGR----EI 87 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i--~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~----~l 87 (251)
+..+|||+|||+.+++++|+++|.+||.| ..|.|+.+. +..+|||||+|.+.++|+.||..|||..|.|. +|
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 46789999999999999999999999999 889888764 45569999999999999999999999999876 67
Q ss_pred EEEec
Q 025517 88 TVQFA 92 (251)
Q Consensus 88 ~v~~a 92 (251)
.|.||
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 77765
No 192
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.62 E-value=1.3e-15 Score=110.73 Aligned_cols=81 Identities=26% Similarity=0.331 Sum_probs=70.0
Q ss_pred CCcEEEEecC--CCCCC--------HHHHHHHhhcCCCeeEEEEccCCCC--CCcceEEEEEEecHHHHHHHHhhhCCCc
Q 025517 14 DTYSLLVLNI--TFRTT--------ADDLFPLFEKYGKVVDVFIPRDRRT--GDSRGFAFVRYKYADEAQKAVDRLDGRV 81 (251)
Q Consensus 14 ~~~~l~V~nL--p~~~t--------~~~L~~~f~~~G~i~~v~i~~~~~~--g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 81 (251)
++.+|+|.|+ |.++. +++|+++|.+||+|..|.|+.+..+ +..+|||||+|.+.++|++||+.|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4778999998 33333 3789999999999999999887644 3578999999999999999999999999
Q ss_pred cCCceEEEEeccC
Q 025517 82 VDGREITVQFAKY 94 (251)
Q Consensus 82 i~g~~l~v~~a~~ 94 (251)
|+|+.|.|.|+..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999853
No 193
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.62 E-value=1.1e-16 Score=126.14 Aligned_cols=85 Identities=25% Similarity=0.353 Sum_probs=73.3
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEE
Q 025517 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (251)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v 89 (251)
+...+.++|||+|||+.+++++|+++|.+||.|..+ ++.+..++..+|||||+|.+.++|++||+ ||+..|.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v 85 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 85 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEE
Confidence 345678999999999999999999999999987653 33444577888999999999999999995 9999999999999
Q ss_pred EeccCCC
Q 025517 90 QFAKYGP 96 (251)
Q Consensus 90 ~~a~~~~ 96 (251)
.++....
T Consensus 86 ~~~~~~~ 92 (175)
T 1fje_B 86 EKPKGRD 92 (175)
T ss_dssp ECCCCSS
T ss_pred ecCCCcc
Confidence 9997643
No 194
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.60 E-value=2.9e-15 Score=123.66 Aligned_cols=78 Identities=23% Similarity=0.284 Sum_probs=71.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccC-CceEEEE
Q 025517 13 RDTYSLLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD-GREITVQ 90 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~-g~~l~v~ 90 (251)
.+..+|||+|||..+++++|+++|.+|| .|..|.|+.. .+|||||+|.+.++|++||+.|||..|. |+.|.|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 3468999999999999999999999999 9999998653 2489999999999999999999999999 9999999
Q ss_pred eccCC
Q 025517 91 FAKYG 95 (251)
Q Consensus 91 ~a~~~ 95 (251)
|+++.
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 99753
No 195
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.60 E-value=4.1e-16 Score=113.21 Aligned_cols=73 Identities=21% Similarity=0.373 Sum_probs=63.7
Q ss_pred EecCCCCCCHHHHHHHh------------hcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceE
Q 025517 20 VLNITFRTTADDLFPLF------------EKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (251)
Q Consensus 20 V~nLp~~~t~~~L~~~f------------~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l 87 (251)
+.||++.+++++|+++| .+||+|..|.|+.+. ++.++|||||+|.+.++|++|+..|||..|+|++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56677777777776666 999999999998875 47889999999999999999999999999999999
Q ss_pred EEEecc
Q 025517 88 TVQFAK 93 (251)
Q Consensus 88 ~v~~a~ 93 (251)
.|+|+.
T Consensus 99 ~v~~sp 104 (104)
T 1jmt_A 99 HAELSP 104 (104)
T ss_dssp CEEECC
T ss_pred EEEEcC
Confidence 999873
No 196
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.60 E-value=2.2e-15 Score=111.68 Aligned_cols=81 Identities=21% Similarity=0.352 Sum_probs=70.6
Q ss_pred CCcEEEEecCCC--C---CCHHHHHHHhhcCCCeeEEEEccCCC----CCCcceEEEEEEecHHHHHHHHhhhCCCccCC
Q 025517 14 DTYSLLVLNITF--R---TTADDLFPLFEKYGKVVDVFIPRDRR----TGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG 84 (251)
Q Consensus 14 ~~~~l~V~nLp~--~---~t~~~L~~~f~~~G~i~~v~i~~~~~----~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g 84 (251)
++.+|+|.||-. + -.+++|+++|.+||+|..|.|+.+.. ++..+|||||+|.+.++|++||+.|||.+|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 578999999842 2 24689999999999999999988754 35678999999999999999999999999999
Q ss_pred ceEEEEeccC
Q 025517 85 REITVQFAKY 94 (251)
Q Consensus 85 ~~l~v~~a~~ 94 (251)
+.|.|.|+..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999864
No 197
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.60 E-value=1.9e-15 Score=121.51 Aligned_cols=78 Identities=23% Similarity=0.280 Sum_probs=71.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccC-CceEEEE
Q 025517 13 RDTYSLLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD-GREITVQ 90 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~-g~~l~v~ 90 (251)
.+..+|||+|||..+++++|.++|.+|| .|..|.|+.+. +|||||+|.+.++|+.||..|||..|+ |+.|.|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 3478999999999999999999999999 99999996642 489999999999999999999999999 9999999
Q ss_pred eccCC
Q 025517 91 FAKYG 95 (251)
Q Consensus 91 ~a~~~ 95 (251)
|+++.
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 99753
No 198
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.58 E-value=3.4e-15 Score=127.23 Aligned_cols=83 Identities=18% Similarity=0.315 Sum_probs=71.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEec
Q 025517 14 DTYSLLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 92 (251)
...+|||+|||+.+++++|.++|.+|| .|..|.|+.+.. |..+|||||+|.+.++|+.||..|||..|.|+.|.|.|+
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 478999999999999999999999999 999999988764 778999999999999999999999999999999999999
Q ss_pred cCCCc
Q 025517 93 KYGPN 97 (251)
Q Consensus 93 ~~~~~ 97 (251)
.+...
T Consensus 195 ~~~~~ 199 (292)
T 2ghp_A 195 NPLEK 199 (292)
T ss_dssp CCC--
T ss_pred CCCcc
Confidence 76543
No 199
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.58 E-value=5.3e-15 Score=115.96 Aligned_cols=76 Identities=28% Similarity=0.505 Sum_probs=67.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcC----C-------CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCc
Q 025517 13 RDTYSLLVLNITFRTTADDLFPLFEKY----G-------KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRV 81 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~----G-------~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 81 (251)
.+.++|||+|||+.+|+++|.++|.+| | .|..+.+..+ +|||||+|.+.++|++|| .||+..
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~------~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT------TTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC------CCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 457899999999999999999999999 6 6777776544 499999999999999999 799999
Q ss_pred cCCceEEEEeccCC
Q 025517 82 VDGREITVQFAKYG 95 (251)
Q Consensus 82 i~g~~l~v~~a~~~ 95 (251)
|.|+.|.|.++...
T Consensus 75 ~~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 75 FQGQSLKIRRPHDY 88 (172)
T ss_dssp ETTEECEEECCSSC
T ss_pred ecCceeeecCCccc
Confidence 99999999998654
No 200
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.58 E-value=4.3e-15 Score=124.98 Aligned_cols=81 Identities=22% Similarity=0.272 Sum_probs=73.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCC-ccC---CceEEE
Q 025517 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR-VVD---GREITV 89 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~i~---g~~l~v 89 (251)
+..+|||+|||+.+|+++|.++|..||.|..|.|+.+ .+|.++|||||+|.+.++|..||..||+. .+. +++|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4679999999999999999999999999999999988 58999999999999999999999999554 444 999999
Q ss_pred EeccCC
Q 025517 90 QFAKYG 95 (251)
Q Consensus 90 ~~a~~~ 95 (251)
.++...
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 999753
No 201
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2.8e-14 Score=102.59 Aligned_cols=76 Identities=22% Similarity=0.308 Sum_probs=64.1
Q ss_pred CcEEEEecCC-------CCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceE
Q 025517 15 TYSLLVLNIT-------FRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (251)
Q Consensus 15 ~~~l~V~nLp-------~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l 87 (251)
...|.|.-.. ..+++++|+++|.+||+|..|.|+ +..+|||||+|.+.++|+.||+.+++ +.|++|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 5567776544 458999999999999999999987 35679999999999999999998554 679999
Q ss_pred EEEeccCCCc
Q 025517 88 TVQFAKYGPN 97 (251)
Q Consensus 88 ~v~~a~~~~~ 97 (251)
.|.|++..+.
T Consensus 83 ~V~~a~~~~~ 92 (100)
T 2d9o_A 83 KISWLEGQPQ 92 (100)
T ss_dssp EEECSSCCCC
T ss_pred EEEEccCCCC
Confidence 9999987654
No 202
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.55 E-value=9.9e-15 Score=117.01 Aligned_cols=75 Identities=27% Similarity=0.482 Sum_probs=65.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcC----C-------CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCcc
Q 025517 14 DTYSLLVLNITFRTTADDLFPLFEKY----G-------KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV 82 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~----G-------~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i 82 (251)
..++|||+|||+.+++++|.++|.+| | .|..+.+.. .+|||||+|.+.++|++|| .|||..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~------~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET------TTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC------CCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 5 566665543 4599999999999999999 7999999
Q ss_pred CCceEEEEeccCC
Q 025517 83 DGREITVQFAKYG 95 (251)
Q Consensus 83 ~g~~l~v~~a~~~ 95 (251)
.|+.|.|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 76 QGQSLKIRRPHDY 88 (198)
T ss_dssp TTEEEEEECCCCC
T ss_pred cCceEEEeCCCCC
Confidence 9999999998754
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.53 E-value=1.9e-14 Score=124.99 Aligned_cols=76 Identities=29% Similarity=0.556 Sum_probs=65.8
Q ss_pred CCCCcEEEEec--CCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccC---Cc-
Q 025517 12 IRDTYSLLVLN--ITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD---GR- 85 (251)
Q Consensus 12 ~~~~~~l~V~n--Lp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~---g~- 85 (251)
..++.+|||+| |++.+|+++|+++|.+||+|..|.|.. .+|||||+|.+.++|++||+.|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 45678999999 578999999999999999999987754 3499999999999999999999999773 44
Q ss_pred -eEEEEecc
Q 025517 86 -EITVQFAK 93 (251)
Q Consensus 86 -~l~v~~a~ 93 (251)
+|.|.|+.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 67788875
No 204
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.1e-13 Score=102.29 Aligned_cols=83 Identities=18% Similarity=0.120 Sum_probs=73.6
Q ss_pred CCCCCCCCcEEEEecCCCC-CCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEec-HHHHHHHHhhhC--CCccC
Q 025517 8 GPPDIRDTYSLLVLNITFR-TTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY-ADEAQKAVDRLD--GRVVD 83 (251)
Q Consensus 8 ~~~~~~~~~~l~V~nLp~~-~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~A~~Ai~~l~--g~~i~ 83 (251)
|......+++|||+||+.. ++.++|+++|.+||+|.+|.|+.+. .+|||.|.+ .++|+.||.+|| +..|+
T Consensus 11 ~~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~------~tgfVrf~~~~~~A~~av~~ln~~~~~i~ 84 (121)
T 1owx_A 11 GSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAKEALGKAKDANNGNLQLR 84 (121)
T ss_dssp CCCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC------SEEEEEESSCHHHHHHHHHHTTTSCBCTT
T ss_pred CcccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC------CEEEEEECCChHHHHHHHHHhhcCCcEEe
Confidence 4566788999999999999 9999999999999999999998876 359999999 899999999995 67899
Q ss_pred CceEEEEeccCCC
Q 025517 84 GREITVQFAKYGP 96 (251)
Q Consensus 84 g~~l~v~~a~~~~ 96 (251)
|..+.+++.....
T Consensus 85 g~~~~~evL~Gee 97 (121)
T 1owx_A 85 NKEVTWEVLEGEV 97 (121)
T ss_dssp SSSEEEEECCHHH
T ss_pred CcEEEEEECCCHH
Confidence 9999998876543
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.50 E-value=8.2e-14 Score=102.54 Aligned_cols=78 Identities=23% Similarity=0.374 Sum_probs=66.2
Q ss_pred CCCcEEEEecCCCCC----------CHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCcc
Q 025517 13 RDTYSLLVLNITFRT----------TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV 82 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~----------t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i 82 (251)
.++.+|.|.|+=... .+++|+++|.+||.|..|.|..+. .+|||||+|.+.++|++||+.|||.+|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 457789999874321 235789999999999999987653 479999999999999999999999999
Q ss_pred CCceEEEEeccC
Q 025517 83 DGREITVQFAKY 94 (251)
Q Consensus 83 ~g~~l~v~~a~~ 94 (251)
+|+.|.|.|+..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999999864
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=2.1e-12 Score=89.82 Aligned_cols=71 Identities=21% Similarity=0.328 Sum_probs=60.8
Q ss_pred CcEEEEecCC----CCCCH----HHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCce
Q 025517 15 TYSLLVLNIT----FRTTA----DDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (251)
Q Consensus 15 ~~~l~V~nLp----~~~t~----~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~ 86 (251)
..||+|.-++ .++.. .+|.+.|.+||+|..+.|+.+. +||+|.+.+.|.+||+ |||..|+|+.
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 4567777766 23333 6799999999999999998864 8999999999999999 9999999999
Q ss_pred EEEEeccC
Q 025517 87 ITVQFAKY 94 (251)
Q Consensus 87 l~v~~a~~ 94 (251)
|+|+++.+
T Consensus 78 LkV~lkt~ 85 (91)
T 2dnr_A 78 ITIALKSP 85 (91)
T ss_dssp EEEEECCC
T ss_pred EEEEeCCC
Confidence 99999875
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=1.6e-11 Score=85.82 Aligned_cols=70 Identities=21% Similarity=0.323 Sum_probs=60.2
Q ss_pred CcEEEEecCCCC-----CCH----HHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCc
Q 025517 15 TYSLLVLNITFR-----TTA----DDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGR 85 (251)
Q Consensus 15 ~~~l~V~nLp~~-----~t~----~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~ 85 (251)
..||+|.-++.. +.. .+|.+.|.+||+|..+.|+.+. +||+|.+.++|.+||+ |||..|+|+
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 457889888632 222 5699999999999999998864 9999999999999999 999999999
Q ss_pred eEEEEecc
Q 025517 86 EITVQFAK 93 (251)
Q Consensus 86 ~l~v~~a~ 93 (251)
.|+|++..
T Consensus 86 ~L~V~~k~ 93 (95)
T 1ufw_A 86 AVKISGPS 93 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEeccC
Confidence 99999864
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.15 E-value=2.3e-10 Score=93.63 Aligned_cols=80 Identities=21% Similarity=0.341 Sum_probs=66.3
Q ss_pred CcEEEEecCC-----CCCCHHHHHHHhhcCCCeeEEEEccCC----CCCCcceEEEEEEecHHHHHHHHhhhCCCccCCc
Q 025517 15 TYSLLVLNIT-----FRTTADDLFPLFEKYGKVVDVFIPRDR----RTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGR 85 (251)
Q Consensus 15 ~~~l~V~nLp-----~~~t~~~L~~~f~~~G~i~~v~i~~~~----~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~ 85 (251)
...|.+.|+- ....+++|.+.|.+||.|..|.|+.+. .++..+|++||+|.+.++|++||+.|||.+|+|+
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 4456665543 223568899999999999999998543 3458899999999999999999999999999999
Q ss_pred eEEEEeccC
Q 025517 86 EITVQFAKY 94 (251)
Q Consensus 86 ~l~v~~a~~ 94 (251)
.|.|.|+..
T Consensus 204 ~i~~~~~~~ 212 (222)
T 3dxb_A 204 KVVAEVYDQ 212 (222)
T ss_dssp BCEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999863
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.86 E-value=8.7e-09 Score=73.41 Aligned_cols=73 Identities=11% Similarity=0.151 Sum_probs=66.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcC-----CCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEE
Q 025517 14 DTYSLLVLNITFRTTADDLFPLFEKY-----GKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~-----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~ 88 (251)
...+|-|-|||..++...|..|++.+ |.|..|.+..+. +-|+|+|.+...|-+|.-+|+|.+|.|++|.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 46789999999999999999999999 999999998886 4599999999999999988999999999999
Q ss_pred EEec
Q 025517 89 VQFA 92 (251)
Q Consensus 89 v~~a 92 (251)
|.-.
T Consensus 94 ~gTv 97 (117)
T 2l9w_A 94 SGTI 97 (117)
T ss_dssp EECH
T ss_pred ecCH
Confidence 8643
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.47 E-value=3e-07 Score=65.18 Aligned_cols=75 Identities=17% Similarity=0.118 Sum_probs=63.1
Q ss_pred CcEEEEecCCCCCCH-----HHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEE
Q 025517 15 TYSLLVLNITFRTTA-----DDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~-----~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v 89 (251)
..+|+|+||+.++.. +.|+++|..|+++....+...- .=..|.|.+.++|.+|-..|++..|+|..|.|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 467999999986632 5789999999988777666542 34799999999999999999999999999999
Q ss_pred EeccCC
Q 025517 90 QFAKYG 95 (251)
Q Consensus 90 ~~a~~~ 95 (251)
.|+.+.
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 999844
No 211
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.37 E-value=2e-06 Score=59.95 Aligned_cols=80 Identities=15% Similarity=0.136 Sum_probs=63.7
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCC--cceEEEEEEecHHHHHHHHhhhCCCccCC-----ceEE
Q 025517 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGD--SRGFAFVRYKYADEAQKAVDRLDGRVVDG-----REIT 88 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~--~~g~afV~f~~~~~A~~Ai~~l~g~~i~g-----~~l~ 88 (251)
++|.|.+||+.+|++++.+.+..+..+....++..+.... ...-|||.|.+.+++....+.++|..|.+ .+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 4799999999999999999999999887777766543322 34679999999999999999999997732 2345
Q ss_pred EEeccCC
Q 025517 89 VQFAKYG 95 (251)
Q Consensus 89 v~~a~~~ 95 (251)
|++|..+
T Consensus 82 VE~AP~q 88 (91)
T 1uw4_A 82 VEFAPFQ 88 (91)
T ss_dssp EEECSSC
T ss_pred EEEcCCC
Confidence 7777543
No 212
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=1.7e-05 Score=55.96 Aligned_cols=72 Identities=13% Similarity=0.131 Sum_probs=59.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhc-----CCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEE
Q 025517 14 DTYSLLVLNITFRTTADDLFPLFEK-----YGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~-----~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~ 88 (251)
...+|.|.|||..+.++.|.-+|+. -|+|..|.... +-|+|+|.+.+.|+..|+. ....|.+..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 4678999999999999999999987 25888887754 3499999999999999883 46788899999
Q ss_pred EEeccC
Q 025517 89 VQFAKY 94 (251)
Q Consensus 89 v~~a~~ 94 (251)
|....+
T Consensus 78 V~P~~~ 83 (104)
T 2dhx_A 78 LRPAPP 83 (104)
T ss_dssp EEECCC
T ss_pred EEcCCC
Confidence 976543
No 213
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=98.20 E-value=6.7e-06 Score=59.84 Aligned_cols=74 Identities=22% Similarity=0.331 Sum_probs=59.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCC-ceEEEE
Q 025517 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG-REITVQ 90 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g-~~l~v~ 90 (251)
....+.|.|-++|+.. ...|..+|.+||+|+......+ ..+..|.|.+..+|++||. .||..|+| -.|-|.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVK 92 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEE
Confidence 3446789999999985 6778889999999998876322 2689999999999999999 69999975 556676
Q ss_pred ecc
Q 025517 91 FAK 93 (251)
Q Consensus 91 ~a~ 93 (251)
.+.
T Consensus 93 p~~ 95 (119)
T 1wwh_A 93 PCI 95 (119)
T ss_dssp ECC
T ss_pred ECC
Confidence 654
No 214
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.14 E-value=6.2e-06 Score=57.51 Aligned_cols=58 Identities=24% Similarity=0.337 Sum_probs=47.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhC
Q 025517 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 78 (251)
....++|+| ++|.++...||.++|..||.| .|..+.+ ..|||.|.+.+.|..||..+.
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 344677888 999999999999999999955 3444444 459999999999999999763
No 215
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=98.03 E-value=1.1e-05 Score=56.60 Aligned_cols=81 Identities=14% Similarity=0.107 Sum_probs=59.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCC--cceEEEEEEecHHHHHHHHhhhCCCccCC-----ce
Q 025517 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGD--SRGFAFVRYKYADEAQKAVDRLDGRVVDG-----RE 86 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~--~~g~afV~f~~~~~A~~Ai~~l~g~~i~g-----~~ 86 (251)
...+|.|..||+.+|++++.+.+..+-++....++..+.+.+ ...-|||.|.+.+++....+.++|..|.+ .+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 356799999999999999988887765554444433332222 23458999999999999999999997732 24
Q ss_pred EEEEeccC
Q 025517 87 ITVQFAKY 94 (251)
Q Consensus 87 l~v~~a~~ 94 (251)
..|++|..
T Consensus 88 a~VE~APy 95 (97)
T 2l08_A 88 AVVEFAPF 95 (97)
T ss_dssp EEEEECCC
T ss_pred eEEEecCC
Confidence 56788753
No 216
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=98.01 E-value=8.1e-06 Score=57.11 Aligned_cols=55 Identities=24% Similarity=0.349 Sum_probs=46.0
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhC
Q 025517 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 78 (251)
.++|+| ++|.++...||.++|..||.| .|..+.+ .-|||.|.+.+.|..||..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 467777 999999999999999999944 4555544 459999999999999999764
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.54 E-value=0.00014 Score=53.55 Aligned_cols=78 Identities=15% Similarity=0.264 Sum_probs=56.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCeeE-EEEccC------------CCCC-CcceEEEEEEecHHHHHHHHhhhCC
Q 025517 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVD-VFIPRD------------RRTG-DSRGFAFVRYKYADEAQKAVDRLDG 79 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~-v~i~~~------------~~~g-~~~g~afV~f~~~~~A~~Ai~~l~g 79 (251)
....|.|-++|+... ..|.++|++||.|++ +.+... +... ....+..|+|++..+|++||. .||
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 355688889987755 556778999999876 222110 0000 124688999999999999999 699
Q ss_pred CccCCceEEEEecc
Q 025517 80 RVVDGREITVQFAK 93 (251)
Q Consensus 80 ~~i~g~~l~v~~a~ 93 (251)
..|+|..|-|.++.
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999988888775
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.97 E-value=0.00036 Score=62.58 Aligned_cols=55 Identities=11% Similarity=0.265 Sum_probs=42.3
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhh
Q 025517 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 76 (251)
.+|+|. +|..+++.+|.++|.+||.|..+.+..+. | .||+|||.+.+.+..++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhc
Confidence 689997 79999999999999999999999887653 2 7999999999999988664
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.58 E-value=0.00096 Score=50.41 Aligned_cols=41 Identities=24% Similarity=0.154 Sum_probs=37.0
Q ss_pred CCCcceEEEEEEecHHHHHHHHhhh-CCCccCCceEEEEeccC
Q 025517 53 TGDSRGFAFVRYKYADEAQKAVDRL-DGRVVDGREITVQFAKY 94 (251)
Q Consensus 53 ~g~~~g~afV~f~~~~~A~~Ai~~l-~g~~i~g~~l~v~~a~~ 94 (251)
....+|+++|+|.+.++|++||+.| ||..|+| .|.|.++..
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 4467799999999999999999999 9999999 999998864
No 220
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.46 E-value=0.002 Score=48.98 Aligned_cols=34 Identities=12% Similarity=0.006 Sum_probs=27.1
Q ss_pred EEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCC
Q 025517 45 VFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR 80 (251)
Q Consensus 45 v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (251)
+.|+.+. ...+|||||+|.+.++|++||+.+++.
T Consensus 3 ~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 3 YKLILNG--KTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEecC--ccccchhHHHHHHHHhHHHHHHhhccc
Confidence 4555543 357899999999999999999887754
No 221
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=95.76 E-value=0.064 Score=36.55 Aligned_cols=58 Identities=21% Similarity=0.310 Sum_probs=49.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhh
Q 025517 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 77 (251)
....+-|.|-|||..+-..++.-.....|--.+|..+. |.|+|.|.+.++..-||+.|
T Consensus 9 ikqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH
T ss_pred hhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH
Confidence 45688999999999999999888888889777887765 55999999999998888876
No 222
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=95.10 E-value=0.14 Score=45.53 Aligned_cols=11 Identities=0% Similarity=0.111 Sum_probs=4.9
Q ss_pred cHHHHHHHHhh
Q 025517 66 YADEAQKAVDR 76 (251)
Q Consensus 66 ~~~~A~~Ai~~ 76 (251)
+.++...++..
T Consensus 115 te~~L~~~F~~ 125 (437)
T 3pgw_S 115 TESKLRREFEV 125 (437)
T ss_pred CHHHHHHHHHH
Confidence 34444444443
No 223
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.78 E-value=0.072 Score=48.44 Aligned_cols=57 Identities=25% Similarity=0.309 Sum_probs=45.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCC
Q 025517 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG 79 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 79 (251)
..++|+|+ +|..+...+|.++|..||.| .|.++.+ ..|||.|.+.+.|..++.++..
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 35677776 99999999999999999965 4444433 4599999999999999998853
No 224
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=93.58 E-value=0.14 Score=33.70 Aligned_cols=68 Identities=15% Similarity=0.179 Sum_probs=43.8
Q ss_pred EEEEec-CCCCCCHHHHHHHhhcCC-----CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEE
Q 025517 17 SLLVLN-ITFRTTADDLFPLFEKYG-----KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (251)
Q Consensus 17 ~l~V~n-Lp~~~t~~~L~~~f~~~G-----~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 90 (251)
+|||.. --..+...+|..+|..-+ .|-.|.|.. .|.||+.... .|+.+++.|++..+.|+.|.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILNG-KGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECTT-CHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECHH-HHHHHHHHhccccCcCceEEEE
Confidence 466632 224567778888886544 456677754 4689988764 5788889999999999999998
Q ss_pred ecc
Q 025517 91 FAK 93 (251)
Q Consensus 91 ~a~ 93 (251)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 225
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=85.08 E-value=3.5 Score=31.58 Aligned_cols=57 Identities=12% Similarity=0.103 Sum_probs=37.8
Q ss_pred cEEEEecCCC-C--------CCHHHHHHHh--hcCCCeeEEEEccCCCCCCcceEEEEEEe-cHHHHHHHHh
Q 025517 16 YSLLVLNITF-R--------TTADDLFPLF--EKYGKVVDVFIPRDRRTGDSRGFAFVRYK-YADEAQKAVD 75 (251)
Q Consensus 16 ~~l~V~nLp~-~--------~t~~~L~~~f--~~~G~i~~v~i~~~~~~g~~~g~afV~f~-~~~~A~~Ai~ 75 (251)
.+++|.|+|. . ....+|.+.| ..|.++.-..+... ..+.|+|+|+|. +..-...|+.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~---~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNY---LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECS---SBEEEEEEEECCSSHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccC---CCCceeEEEEecCChHHHHHHHH
Confidence 4578889987 2 3457899977 89988765444432 235689999998 4444444444
No 226
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=83.80 E-value=2.8 Score=26.47 Aligned_cols=55 Identities=11% Similarity=0.022 Sum_probs=42.3
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhh
Q 025517 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 76 (251)
..+|.|.|+.-..-...|...|.. ..|..+.+.... +.+.|+|.+.++...||+.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~------~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNE------AVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSE------EEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccC------CEEEEEECCHHHHHHHHHH
Confidence 457899999988788899999998 778877775432 5678888866666777764
No 227
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=77.42 E-value=3.5 Score=28.45 Aligned_cols=53 Identities=21% Similarity=0.319 Sum_probs=40.5
Q ss_pred EecCCCCCCHHHHHHHh-hcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCC
Q 025517 20 VLNITFRTTADDLFPLF-EKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR 80 (251)
Q Consensus 20 V~nLp~~~t~~~L~~~f-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (251)
|-.++.-+..+||...+ ..||.-..+.++.+. +.|-..+.++..+||+.|+-.
T Consensus 21 Ii~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~E--------llIpl~sQeDLDkaIellDrs 74 (103)
T 2cu1_A 21 ILQFPRPVKLEDLRSKAKIAFGQSMDLHYTNNE--------LVIPLTTQDDLDKAVELLDRS 74 (103)
T ss_dssp EEEEESSCCHHHHHHHHHHHHSSCEEEEECSSS--------SCEECCSHHHHHHHHHHHHHC
T ss_pred EEeccCCccHHHHHHHHHHHhCCeeeEEEecce--------EEEeccCHHHHHHHHHHHccC
Confidence 33567778888887766 478887777766332 789999999999999987744
No 228
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=75.64 E-value=7.9 Score=26.22 Aligned_cols=35 Identities=9% Similarity=0.288 Sum_probs=26.5
Q ss_pred CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCC
Q 025517 41 KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR 80 (251)
Q Consensus 41 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (251)
+|..|.++.. ..||.||++...++...+|..+.|.
T Consensus 39 ~i~~v~vP~~-----fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 39 DVYSILASES-----LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp CEEEEEECTT-----STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cEEEEEEecc-----cCCEEEEEEecchhHHHHHHCCCCc
Confidence 3566655432 5699999999999998898877665
No 229
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=74.14 E-value=9.4 Score=23.68 Aligned_cols=55 Identities=9% Similarity=0.097 Sum_probs=40.9
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEe----cHHHHHHHHhh
Q 025517 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK----YADEAQKAVDR 76 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~----~~~~A~~Ai~~ 76 (251)
.+|.|.|+.-..-...|...|.....|..+.+.... +.+.|+|. +.++...||+.
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~ 62 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQ------NRADVVFDPNLVKEEDIKEEIED 62 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGG------TEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHH
Confidence 468888988777778899999998778777665432 45889885 45666777765
No 230
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=75.21 E-value=0.73 Score=32.52 Aligned_cols=68 Identities=22% Similarity=0.239 Sum_probs=42.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEE--EEEEecHHHHHHHHhhhCCCccCCce
Q 025517 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFA--FVRYKYADEAQKAVDRLDGRVVDGRE 86 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~a--fV~f~~~~~A~~Ai~~l~g~~i~g~~ 86 (251)
..+||.|..+.. +++|..|+.+++ +..+.+.....+|+. .|. |-.|.+.++|.+|+..|-...-...+
T Consensus 24 ~~YTLQL~a~~~---~~~l~~f~~~~~-l~~~~v~~t~rnGk~-WyvVlyG~Y~s~~~A~~A~~~LP~~l~~~~P 93 (106)
T 2lfv_A 24 SHYTLQLSSSSN---YDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKKAVSTLPADVQAKNP 93 (106)
Confidence 467888776653 566777777776 344555443323322 333 44789999999999988755444433
No 231
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=72.59 E-value=7.7 Score=26.47 Aligned_cols=53 Identities=21% Similarity=0.343 Sum_probs=41.2
Q ss_pred EecCCCCCCHHHHHHHhh-cCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCC
Q 025517 20 VLNITFRTTADDLFPLFE-KYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR 80 (251)
Q Consensus 20 V~nLp~~~t~~~L~~~f~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (251)
|-.++.-+..++|..... .||....+.++.+. ..|-..+.++..+||+.|+-.
T Consensus 33 Ii~f~RPv~f~el~~kv~~afGq~ldl~y~nnE--------L~iPL~~Q~DLDkAvelLDrs 86 (100)
T 2npt_B 33 ILQFPRPVKLEDLRSKAKIAFGQSMDLHYTNNE--------LVIPLTTQDDLDKAVELLDRS 86 (100)
T ss_dssp EEEECSSCCHHHHHHHHHHHHTSCEEEEEEETT--------EEEECCCHHHHHHHHHHHHHC
T ss_pred EEecCCCccHHHHHHHHHHHhCCeeeeEEecce--------eEEecccHHHHHHHHHHhccC
Confidence 345677788888887774 78988888776543 788899999999999977643
No 232
>2lsl_A Telomerase associated protein P65; LA protein, LARP7, RRM, RNA BI protein; NMR {Tetrahymena thermophila}
Probab=74.73 E-value=0.77 Score=31.52 Aligned_cols=68 Identities=18% Similarity=0.244 Sum_probs=41.5
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCC-----------------CCCcceEEEEEEecHHHHHH
Q 025517 10 PDIRDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRR-----------------TGDSRGFAFVRYKYADEAQK 72 (251)
Q Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~-----------------~g~~~g~afV~f~~~~~A~~ 72 (251)
......+-|.|-|||..+-..++.-.....|--.+|..+.... .-...|.|+|.|.+.++..-
T Consensus 13 veikqnclikiinipqgtlkaevvlavrhlgyefycdyidensnqinsnliqqdqhpqlndllkegqamirfqnsdeqrl 92 (137)
T 2lsl_A 13 VEIKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDENSNQINSNLIQQDQHPQLNDLLKEGQAMIRFQNSDEQRL 92 (137)
Confidence 3456678888999998876666554444444322222221100 00124789999999988888
Q ss_pred HHhhh
Q 025517 73 AVDRL 77 (251)
Q Consensus 73 Ai~~l 77 (251)
||+.|
T Consensus 93 aiqkl 97 (137)
T 2lsl_A 93 AIQKL 97 (137)
Confidence 88765
No 233
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=71.07 E-value=7.3 Score=26.36 Aligned_cols=53 Identities=8% Similarity=0.049 Sum_probs=36.4
Q ss_pred EEEecCCCCCCHHHHHHHhhc-CC----CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhh
Q 025517 18 LLVLNITFRTTADDLFPLFEK-YG----KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77 (251)
Q Consensus 18 l~V~nLp~~~t~~~L~~~f~~-~G----~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 77 (251)
|.+.-+|..++.++|.+.+.. |+ +...+.++-+ .| -+|++.+.++.+.||..+
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE--eG-----D~itisSd~EL~eAl~l~ 74 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE--EG-----DPCTVSSQLELEEAFRLY 74 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS--SS-----CCEECCSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC--CC-----CcccccCHHHHHHHHHHH
Confidence 566778889999988876642 32 3334444332 23 588999999999998854
No 234
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=68.37 E-value=7.5 Score=23.73 Aligned_cols=55 Identities=18% Similarity=0.131 Sum_probs=39.6
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEe---cHHHHHHHHhh
Q 025517 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK---YADEAQKAVDR 76 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~---~~~~A~~Ai~~ 76 (251)
.+|.|.|+.-..-...|...+.....|..+.+.... +-+.|+|. +.+....+|+.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFAL------EQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCHHHHHHHHHH
Confidence 468888988777788899999998778877775543 45788884 34455556553
No 235
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=68.37 E-value=3 Score=39.00 Aligned_cols=55 Identities=11% Similarity=0.170 Sum_probs=39.7
Q ss_pred cCCCCCCHHHHHHHhh----cCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhh
Q 025517 22 NITFRTTADDLFPLFE----KYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77 (251)
Q Consensus 22 nLp~~~t~~~L~~~f~----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 77 (251)
.++...+--||..+|. .+|.|+.+.|...+ ......+++|.|.+.++|.+|+..+
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P-~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRP-TPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEE-CCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeecc-CCccccccccccCCchhhhhhHHHH
Confidence 3445555557888883 67889988877654 2334567899999999999888765
No 236
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=68.33 E-value=16 Score=21.76 Aligned_cols=55 Identities=18% Similarity=0.109 Sum_probs=37.5
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEec---HHHHHHHHhh
Q 025517 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY---ADEAQKAVDR 76 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~---~~~A~~Ai~~ 76 (251)
.+|.|.|+.-..-...|...+.....|..+.+.... +.+.|.|.. .+....+|+.
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~~ 62 (71)
T 2xmw_A 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVNFAL------EQAVVSYHGETTPQILTDAVER 62 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEEC---CHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccC------CEEEEEECCCCCHHHHHHHHHH
Confidence 467888887666667889999888778877775432 567888863 3344455554
No 237
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=67.26 E-value=14 Score=21.72 Aligned_cols=55 Identities=15% Similarity=0.136 Sum_probs=36.5
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEe---cHHHHHHHHhhh
Q 025517 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK---YADEAQKAVDRL 77 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~---~~~~A~~Ai~~l 77 (251)
+|.|.|+.-..-...|+..+.....|..+.+.... +.+.|+|. +.+....+|+.+
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~~~ 61 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEK------KSVVVEFDAPATQDLIKEALLDA 61 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTT------TEEEEEECTTCCHHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCC------CEEEEEECCCCCHHHHHHHHHHc
Confidence 46666776655667888999888778777765432 55788886 344555566543
No 238
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=66.84 E-value=8.1 Score=26.71 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=40.2
Q ss_pred EecCCCCCCHHHHHHHhh-cCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCC
Q 025517 20 VLNITFRTTADDLFPLFE-KYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR 80 (251)
Q Consensus 20 V~nLp~~~t~~~L~~~f~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (251)
|-.++.-+..++|..... .||....+.++.+. -.|-..+.++..+||+.|+-.
T Consensus 44 Iiqf~RPvkf~dl~qkv~~afGq~ldl~y~nnE--------L~IPL~~Q~DLDkAvelLDrs 97 (111)
T 2c60_A 44 IIAFSRPVKYEDVEHKVTTVFGQPLDLHYMNNE--------LSILLKNQDDLDKAIDILDRS 97 (111)
T ss_dssp EEEECSSCCHHHHHHHHHHHHSSCCEEEEECSS--------CEEECCSHHHHHHHHHHHHHC
T ss_pred EEecCCCccHHHHHHHHHHHhCCeeeeEEecce--------EEEecccHHHHHHHHHHhccC
Confidence 335677788888887764 78988888776443 678889999999999977643
No 239
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=66.64 E-value=14 Score=24.88 Aligned_cols=65 Identities=15% Similarity=0.257 Sum_probs=45.3
Q ss_pred EecCCCCCCHHHHHHHh-hcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEecc
Q 025517 20 VLNITFRTTADDLFPLF-EKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (251)
Q Consensus 20 V~nLp~~~t~~~L~~~f-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 93 (251)
|-.++.-+..++|.... ..||....+.++.+. ..|-..+.++..+||+.|+-.. .-+.|.|-+..
T Consensus 17 Ii~f~RPvkf~dl~qkv~~afGq~ldl~y~nnE--------L~iPL~~Q~DLDkAvelLDrs~-~mkSLRIlL~~ 82 (94)
T 2jrh_A 17 IIAFSRPVKYEDVEHKVTTVFGQPLDLHYMNNE--------LSILLKNQDDLDKAIDILDRSS-SMKSLRILLLS 82 (94)
T ss_dssp EEEECSSCCHHHHHHHHHHHHCSSEEEEEECSS--------CEEECCSHHHHHHHHHHHHHST-TTTEEEEEEEE
T ss_pred EEecCCCccHHHHHHHHHHHhCCeeeeEEecce--------eEEeccCHHHHHHHHHHhccCc-cccceEEEEEc
Confidence 44567778888888776 478988888776443 6888999999999999776432 33344444443
No 240
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=66.08 E-value=20 Score=22.10 Aligned_cols=57 Identities=16% Similarity=0.158 Sum_probs=39.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEec----HHHHHHHHhhh
Q 025517 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDRL 77 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~A~~Ai~~l 77 (251)
..+|.|.++.-..-...|...+.....|..+.+.... +.+.|.|.. .+....+|+.+
T Consensus 9 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 69 (79)
T 1kvi_A 9 SVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEE------KNATIIYDPKLQTPKTLQEAIDDM 69 (79)
T ss_dssp EEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGG------TEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEccC------CEEEEEECCCCCCHHHHHHHHHHC
Confidence 4568888998777788899999888767666554432 558888863 35556666654
No 241
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=65.33 E-value=19 Score=21.50 Aligned_cols=55 Identities=11% Similarity=0.106 Sum_probs=38.0
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEec----HHHHHHHHhh
Q 025517 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDR 76 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~A~~Ai~~ 76 (251)
.+|.|.|+.-..-...|...+.....|..+.+.... +.+.|.|.. .+....+|..
T Consensus 7 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~ 65 (71)
T 2l3m_A 7 LTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAE------GTVEVTIDSSVVTLKDIVAVIED 65 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEEETTTSCHHHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHH
Confidence 468888887665667788899888778777765432 567888873 3445556654
No 242
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=63.59 E-value=25 Score=22.23 Aligned_cols=57 Identities=16% Similarity=0.206 Sum_probs=40.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEe----cHHHHHHHHhhh
Q 025517 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK----YADEAQKAVDRL 77 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~----~~~~A~~Ai~~l 77 (251)
..+|.|.++.-..-...|...+.....|..+.+.... +.+.|+|. +.+....+|+.+
T Consensus 10 ~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 70 (84)
T 1q8l_A 10 VLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDN------QEATIVYQPHLISVEEMKKQIEAM 70 (84)
T ss_dssp EEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTT------TEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHc
Confidence 3467888988766677899999988888888775432 56888885 345556666643
No 243
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=63.48 E-value=20 Score=21.08 Aligned_cols=55 Identities=15% Similarity=0.160 Sum_probs=38.8
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEec----HHHHHHHHhh
Q 025517 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDR 76 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~A~~Ai~~ 76 (251)
.+|.|.|+.-..-...|...+.....|..+.+.... +.+.|+|.. .+....+|+.
T Consensus 2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~ 60 (68)
T 1cpz_A 2 QEFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKK------EKAVVKFDEANVQATEICQAINE 60 (68)
T ss_dssp CEEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEECTTTCCHHHHHHHHHT
T ss_pred EEEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHH
Confidence 368888888777778899999988778777765432 567888863 3445555554
No 244
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=62.98 E-value=21 Score=21.19 Aligned_cols=54 Identities=20% Similarity=0.182 Sum_probs=37.9
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEec---HHHHHHHHhh
Q 025517 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY---ADEAQKAVDR 76 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~---~~~A~~Ai~~ 76 (251)
+|.|.|+.-..-...|...+.....|..+.+.... +.+.|.|.. .+....+|+.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~~ 59 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPK------GTAQLAIVPGTSPDALTAAVAG 59 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTT------TEEEEEECTTSCHHHHHHHHHT
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccC------CEEEEEECCCCCHHHHHHHHHH
Confidence 47888888766678899999888778777775442 557788863 3445555554
No 245
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=61.50 E-value=14 Score=24.74 Aligned_cols=56 Identities=25% Similarity=0.258 Sum_probs=37.3
Q ss_pred EEEecCCCCCCHHHHHHHhhc-CC-CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhh
Q 025517 18 LLVLNITFRTTADDLFPLFEK-YG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76 (251)
Q Consensus 18 l~V~nLp~~~t~~~L~~~f~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 76 (251)
.|+-.+...++..+|++.+++ || .|..|..+.-+ .| .--|||.+....+|......
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~-~~--~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP-RG--EKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECT-TS--CEEEEEEECTTSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC-CC--ceEEEEEcCCCCcHHHHHHh
Confidence 455567888999999999976 55 56666544332 12 13499999877777665443
No 246
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=61.36 E-value=25 Score=21.37 Aligned_cols=55 Identities=16% Similarity=0.161 Sum_probs=37.9
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEec----HHHHHHHHhhh
Q 025517 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDRL 77 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~A~~Ai~~l 77 (251)
+|.|.++.-..-...|...+.....|..+.+.... +.+.|.|.. .+....+|+.+
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 63 (75)
T 3cjk_B 5 TISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEE------KNATIIYDPKLQTPKTLQEAIDDM 63 (75)
T ss_dssp EEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHc
Confidence 57788877655667788999888778777765432 568888863 45556666643
No 247
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=61.26 E-value=24 Score=21.11 Aligned_cols=56 Identities=18% Similarity=0.100 Sum_probs=39.0
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEec----HHHHHHHHhhh
Q 025517 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDRL 77 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~A~~Ai~~l 77 (251)
.+|.|.|+.-......|...+.....|..+.+.... +.+.|.|.. .+....+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1osd_A 5 VTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFET------RQAVVTFDDAKTSVQKLTKATADA 64 (72)
T ss_dssp EEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEEETTTCCHHHHHHHHHHT
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHhc
Confidence 357777887766777899999988778777765432 568888863 34555666643
No 248
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=60.47 E-value=37 Score=23.11 Aligned_cols=56 Identities=14% Similarity=0.100 Sum_probs=40.6
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEec----HHHHHHHHhhh
Q 025517 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDRL 77 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~A~~Ai~~l 77 (251)
.+|.|.++.-......|...|...-.|..+.+.... +.+.|+|.. .+....+|..+
T Consensus 10 ~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~~------~~~~V~~~~~~~~~~~i~~~i~~~ 69 (111)
T 2ofg_X 10 QQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVAT------GRLTVTYDPKQVSEITIQERIAAL 69 (111)
T ss_dssp EEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETTT------TEEEEEECTTTCSHHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECCC------CEEEEEECCCCCCHHHHHHHHHHc
Confidence 467888888777788899999988778877775432 568888873 35556666643
No 249
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=60.44 E-value=9.5 Score=24.60 Aligned_cols=65 Identities=15% Similarity=0.094 Sum_probs=43.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCcc
Q 025517 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV 82 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i 82 (251)
...+.|.|+-+......+.|...+...|.-..|. . .+..-..-+--|.+.++|+.++..|...-+
T Consensus 7 ~~~~~vQvGaf~~~~~A~~~~~~L~~~g~~~~i~--~---~~~~yRV~vGpf~~~~~A~~~~~~L~~~g~ 71 (79)
T 1x60_A 7 SGLYKVQIGAFKVKANADSLASNAEAKGFDSIVL--L---KDGLYKVQIGAFSSKDNADTLAARAKNAGF 71 (79)
T ss_dssp CCEEEEEEEEESCHHHHHHHHHHHHHHTCCEEEE--E---ETTEEEEEEEEESSHHHHHHHHHHHHHHTS
T ss_pred CCCEEEEEEEcCCHHHHHHHHHHHHhCCCCeEEe--c---CCcEEEEEECCcCCHHHHHHHHHHHHHcCC
Confidence 4568999999998777788888887667433332 1 111112234468899999999988865434
No 250
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=59.56 E-value=1.7 Score=32.48 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=17.7
Q ss_pred HHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEe
Q 025517 30 DDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK 65 (251)
Q Consensus 30 ~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~ 65 (251)
+||.++|...|.|+.+... +||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~--------kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVR--------MGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEETT--------TTEEEEEEE
T ss_pred CcccccccceeEEEEEECC--------CCeeEEeeC
Confidence 4666778888877765442 289999976
No 251
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=58.71 E-value=14 Score=28.94 Aligned_cols=26 Identities=8% Similarity=0.045 Sum_probs=22.7
Q ss_pred cceEEEEEEecHHHHHHHHhhhCCCc
Q 025517 56 SRGFAFVRYKYADEAQKAVDRLDGRV 81 (251)
Q Consensus 56 ~~g~afV~f~~~~~A~~Ai~~l~g~~ 81 (251)
.+||.|||=....++..||+.|.+..
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi~~vy 173 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGVPDIY 173 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTCTTEE
T ss_pred CcEEEEEEECCHHHHHHHHhhhhhhh
Confidence 56999999999999999998887753
No 252
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=58.56 E-value=16 Score=24.75 Aligned_cols=43 Identities=12% Similarity=0.206 Sum_probs=25.6
Q ss_pred HHHHhhcCC-CeeEEEEccCCCCC--CcceEEEEEEecHHHHHHHHh
Q 025517 32 LFPLFEKYG-KVVDVFIPRDRRTG--DSRGFAFVRYKYADEAQKAVD 75 (251)
Q Consensus 32 L~~~f~~~G-~i~~v~i~~~~~~g--~~~g~afV~f~~~~~A~~Ai~ 75 (251)
+..+|.+|| .+.... ......| ......+|+|.+.+.|++++.
T Consensus 26 ~~~~l~~~GG~~l~rg-~~~~lEG~~~~~~~viieFps~~aa~a~y~ 71 (94)
T 3lo3_A 26 VASTLAKYSGEVLVKG-SVEQLHGKFEHKAQVILEFPSREDAYNWYH 71 (94)
T ss_dssp HHHHHHTTTCEEEEEE-ECEEEESCCCCSEEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHcCCEEEEEc-ccccccCCCCCCeEEEEECCCHHHHHHHHC
Confidence 456677786 332211 1111112 244678999999999998865
No 253
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=58.50 E-value=27 Score=24.29 Aligned_cols=35 Identities=14% Similarity=0.384 Sum_probs=26.1
Q ss_pred CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCC
Q 025517 41 KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR 80 (251)
Q Consensus 41 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (251)
.|..|.... ..+||.|||=....++..||+.+.+.
T Consensus 40 ~I~Si~~~~-----~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAPE-----HVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEECT-----TCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEecC-----CCceEEEEEeCCHHHHHHHHhcccce
Confidence 366665543 24699999999999999998876544
No 254
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=58.20 E-value=21 Score=23.29 Aligned_cols=56 Identities=11% Similarity=0.252 Sum_probs=39.6
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEec----HHHHHHHHhhh
Q 025517 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDRL 77 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~A~~Ai~~l 77 (251)
.+|.|.++.-......|...+.....|..+.+.... +.+.|.|.. .+....+|+.+
T Consensus 5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~------~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLEN------RSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTT------TEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccC------CEEEEEECCCCCCHHHHHHHHHhc
Confidence 467888887666667799999988878887775543 568888853 45556666654
No 255
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=58.10 E-value=28 Score=20.95 Aligned_cols=56 Identities=11% Similarity=0.171 Sum_probs=39.5
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEec----HHHHHHHHhh
Q 025517 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDR 76 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~A~~Ai~~ 76 (251)
..+|.|.|+.-..-...|...+.....|..+.+.... +.+.|.|.. .+....+|+.
T Consensus 5 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~ 64 (75)
T 1yjr_A 5 VLELVVRGMTCASCVHKIESSLTKHRGILYCSVALAT------NKAHIKYDPEIIGPRDIIHTIES 64 (75)
T ss_dssp CEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTT------TEEEEEECTTTTHHHHHHHHHHH
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHH
Confidence 4578899998877778899999988778877765432 568888863 2334445543
No 256
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=57.46 E-value=18 Score=21.64 Aligned_cols=56 Identities=11% Similarity=0.138 Sum_probs=37.4
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEec----HHHHHHHHhhh
Q 025517 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDRL 77 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~A~~Ai~~l 77 (251)
.+|.|.|+.-..-...|...+.....|..+.+.... +.+.|.|.. .+....+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1aw0_A 5 TVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLAN------SNGTVEYDPLLTSPETLRGAIEDM 64 (72)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTT------TEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccC------CEEEEEECCCcCCHHHHHHHHHHC
Confidence 367788887655567788888887767666665432 568888863 44556666644
No 257
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=56.21 E-value=31 Score=20.85 Aligned_cols=56 Identities=14% Similarity=0.086 Sum_probs=39.2
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEec--HHHHHHHHhhh
Q 025517 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY--ADEAQKAVDRL 77 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~--~~~A~~Ai~~l 77 (251)
.+|.|.|+.-..-...|...+.....|..+.+.... +.+.|.|.. .+....+|..+
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~------~~~~v~~~~~~~~~i~~~i~~~ 62 (73)
T 1mwy_A 5 YSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFAT------EKLVVDADNDIRAQVESALQKA 62 (73)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETTT------TEEEEEESSCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEecC------CEEEEEECCCCHHHHHHHHHHc
Confidence 468889998777778899999988778877775432 557888874 33445555543
No 258
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=56.04 E-value=17 Score=31.84 Aligned_cols=58 Identities=22% Similarity=0.288 Sum_probs=39.9
Q ss_pred EEEEecCCCCC----CHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCC
Q 025517 17 SLLVLNITFRT----TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG 84 (251)
Q Consensus 17 ~l~V~nLp~~~----t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g 84 (251)
.-+||||..-. ....+.++..+||.|..+.+. +.-+|...+.+.|+.++.. ++..+.+
T Consensus 16 lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g---------~~~~vvv~~p~~~k~il~~-~~~~f~~ 77 (494)
T 3swz_A 16 LPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG---------TKTTVIVGHHQLAKEVLIK-KGKDFSG 77 (494)
T ss_dssp CCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHTT-TTTTTBB
T ss_pred CCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC---------CCCEEEECCHHHHHHHHHh-CcHhhCC
Confidence 34688887432 246677888899999888774 2357777899999998863 3344433
No 259
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=55.83 E-value=27 Score=20.79 Aligned_cols=55 Identities=16% Similarity=0.140 Sum_probs=36.6
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEe---cHHHHHHHHhhh
Q 025517 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK---YADEAQKAVDRL 77 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~---~~~~A~~Ai~~l 77 (251)
+|.|.|+.-......|...+.....|..+.+.... +.+.|+|. +.+....+|+.+
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~~~ 62 (72)
T 1fvq_A 5 ILAVHGMTCSACTNTINTQLRALKGVTKCDISLVT------NECQVTYDNEVTADSIKEIIEDC 62 (72)
T ss_dssp EEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTTT------TEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCHHHHHHHHHHC
Confidence 57787877655667788888888778777664432 56788886 334455566543
No 260
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=54.94 E-value=20 Score=24.78 Aligned_cols=78 Identities=19% Similarity=0.252 Sum_probs=45.4
Q ss_pred CCCCCCCCCCCcEEEEe----------cCCCCCCHHHHHHHhh-cCCCee--EEEEccCCCCCCcceEEEEEEecHHHHH
Q 025517 5 GKSGPPDIRDTYSLLVL----------NITFRTTADDLFPLFE-KYGKVV--DVFIPRDRRTGDSRGFAFVRYKYADEAQ 71 (251)
Q Consensus 5 ~~~~~~~~~~~~~l~V~----------nLp~~~t~~~L~~~f~-~~G~i~--~v~i~~~~~~g~~~g~afV~f~~~~~A~ 71 (251)
|..|+..+....+|.|. ..+..++|++|..++. .|| +. .|+.... .+ --|...+..+.+
T Consensus 4 ~~~~~~~m~~~v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~-L~~~~IkY~DE--en-----D~V~i~Sq~E~e 75 (101)
T 1wj6_A 4 GSSGPHSMEPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFD-LNTIQIKYLDE--EN-----EEVSINSQGEYE 75 (101)
T ss_dssp SSCCCCSSCSCEEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHC-CSSBCCEEECT--TS-----CEECCCSHHHHH
T ss_pred CCCCccccCccEEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcC-CCceEEEEecC--CC-----CEEEEecHHHHH
Confidence 55666666666666443 2344899999999995 444 22 2222222 11 356666777778
Q ss_pred HHHhhhCCCccCCceEEEEecc
Q 025517 72 KAVDRLDGRVVDGREITVQFAK 93 (251)
Q Consensus 72 ~Ai~~l~g~~i~g~~l~v~~a~ 93 (251)
.|+... .-.|..|.++..+
T Consensus 76 EAlkva---~k~~n~L~m~V~~ 94 (101)
T 1wj6_A 76 EALKMA---VKQGNQLQMQVHE 94 (101)
T ss_dssp HHHHHH---HHHTSEEEEECCB
T ss_pred HHHHHh---ccCCCEEEEEEee
Confidence 887731 1235667777654
No 261
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=54.54 E-value=21 Score=24.69 Aligned_cols=48 Identities=17% Similarity=0.294 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHhhc-CC---CeeEE-EEccCCCCCCcceEEEEEEecHHHHHHH
Q 025517 25 FRTTADDLFPLFEK-YG---KVVDV-FIPRDRRTGDSRGFAFVRYKYADEAQKA 73 (251)
Q Consensus 25 ~~~t~~~L~~~f~~-~G---~i~~v-~i~~~~~~g~~~g~afV~f~~~~~A~~A 73 (251)
..++..+|++.+.+ |+ .++.| .|......|...|||+| |++.+.|+..
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 45677777777753 43 33333 44444445566677754 6676666554
No 262
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=53.77 E-value=30 Score=20.02 Aligned_cols=55 Identities=13% Similarity=0.160 Sum_probs=36.7
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEec----HHHHHHHHhh
Q 025517 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDR 76 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~A~~Ai~~ 76 (251)
.+|.|.++.-..-...|...+.....|..+.+.... +.+.|.|.. .+....+|..
T Consensus 4 ~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~ 62 (69)
T 2qif_A 4 KTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEA------GKVDVSFDADKVSVKDIADAIED 62 (69)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeeEEEEEecC------CEEEEEECCCCCCHHHHHHHHHH
Confidence 357888887655566788888888778777665432 557888863 3445555654
No 263
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=53.51 E-value=62 Score=23.55 Aligned_cols=48 Identities=29% Similarity=0.360 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHhh-cCC---CeeEE-EEccCCCCCCcceEEEEEEecHHHHHHH
Q 025517 25 FRTTADDLFPLFE-KYG---KVVDV-FIPRDRRTGDSRGFAFVRYKYADEAQKA 73 (251)
Q Consensus 25 ~~~t~~~L~~~f~-~~G---~i~~v-~i~~~~~~g~~~g~afV~f~~~~~A~~A 73 (251)
..++..+|.+.+. .|+ +++.| .|......|...|||+| |++.+.|+..
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk~ 85 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKKF 85 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHhc
Confidence 3567889988885 455 23333 34344344556667665 6777666543
No 264
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=53.18 E-value=27 Score=24.42 Aligned_cols=48 Identities=15% Similarity=0.101 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHhhc-CC---CeeEE-EEccCCCCCCcceEEEEEEecHHHHHHH
Q 025517 25 FRTTADDLFPLFEK-YG---KVVDV-FIPRDRRTGDSRGFAFVRYKYADEAQKA 73 (251)
Q Consensus 25 ~~~t~~~L~~~f~~-~G---~i~~v-~i~~~~~~g~~~g~afV~f~~~~~A~~A 73 (251)
..++..+|.+.+.+ |+ .++.| .|......|...|||.| |++.+.|+..
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 35567777766643 33 33333 34444445566777755 7777776654
No 265
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=52.86 E-value=35 Score=20.44 Aligned_cols=57 Identities=16% Similarity=0.153 Sum_probs=38.8
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEec----HHHHHHHHhhh
Q 025517 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDRL 77 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~A~~Ai~~l 77 (251)
..+|.|.|+.-......|...+.....|..+.+.... +.+.|.|.. .+....+|..+
T Consensus 7 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 67 (76)
T 1opz_A 7 EIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLAT------ETVNVIYDPAETGTAAIQEKIEKL 67 (76)
T ss_dssp EEEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGGG------TEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHC
Confidence 3468889998776777899999888777776664432 557888853 44555556543
No 266
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=52.85 E-value=6.4 Score=32.49 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=24.6
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeeEEEE
Q 025517 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFI 47 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i 47 (251)
..+.|+|||+.++...|..+|.....+..+.+
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~ 146 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHF 146 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEE
Confidence 46789999999999999999976544544433
No 267
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=52.41 E-value=15 Score=30.18 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=23.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeE
Q 025517 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVD 44 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~ 44 (251)
...+.|+|||+.++...|..++.. +.+..
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~ 138 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFAR 138 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCE
Confidence 457899999999999999999977 54433
No 268
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=52.15 E-value=34 Score=25.05 Aligned_cols=46 Identities=20% Similarity=0.320 Sum_probs=30.2
Q ss_pred HHHHHhhcCCCeeEEEEccCC-CCCC--------------cceEEEEEEecHHHHHHHHhh
Q 025517 31 DLFPLFEKYGKVVDVFIPRDR-RTGD--------------SRGFAFVRYKYADEAQKAVDR 76 (251)
Q Consensus 31 ~L~~~f~~~G~i~~v~i~~~~-~~g~--------------~~g~afV~f~~~~~A~~Ai~~ 76 (251)
...++|..||-+..+..+.+. ..|+ ..-|.+|+|.+.+...+|+++
T Consensus 49 ~a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~k 109 (141)
T 2okq_A 49 KAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQK 109 (141)
T ss_dssp HHHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHH
Confidence 345788999976555443221 2222 345999999999888887643
No 269
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=52.05 E-value=23 Score=21.77 Aligned_cols=56 Identities=14% Similarity=0.161 Sum_probs=38.2
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEec----HHHHHHHHhhh
Q 025517 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDRL 77 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~A~~Ai~~l 77 (251)
.+|.|.++.-..-...|...+.....|..+.+.... +.+.|.|.. .+....+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 64 (77)
T 1y3j_A 5 CYIQVTGMTCASCVANIERNLRREEGIYSILVALMA------GKAEVRYNPAVIQPPMIAEFIREL 64 (77)
T ss_dssp EEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTTT------TBEEEEECTTTSCHHHHHHHHHHH
T ss_pred EEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHc
Confidence 367888887766778899999888777776654332 457888863 34555666643
No 270
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=51.82 E-value=38 Score=23.31 Aligned_cols=75 Identities=11% Similarity=0.214 Sum_probs=40.6
Q ss_pred cEEEEecCCCCCCHHH--HHHHhhc-----C---C-----CeeEEEEccCCCCC--CcceEEEEEEecHHH---HHHHHh
Q 025517 16 YSLLVLNITFRTTADD--LFPLFEK-----Y---G-----KVVDVFIPRDRRTG--DSRGFAFVRYKYADE---AQKAVD 75 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~--L~~~f~~-----~---G-----~i~~v~i~~~~~~g--~~~g~afV~f~~~~~---A~~Ai~ 75 (251)
+.|.|-|||....+.. +..+|.. | + .|..+.-..++.+. .......|.|....+ ...|..
T Consensus 4 ~NirIiGvPE~e~~k~~~~e~lf~eIi~enfPnL~ke~~i~v~ea~Rsp~~~~~kr~tPRhIIvK~~~~~~KErILkaar 83 (100)
T 2w7a_A 4 GNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAR 83 (100)
T ss_dssp TEEEEECCCCCTTCCHHHHHHHHHHHHHHHCHHHHHHTCCCEEEEEEESSSCCSSCCSCCEEEEEESCHHHHHHHHHHHH
T ss_pred cceeEEeCCCCccccchhHHHHHHHHHHHHCcCcccchhhhhhhhhcCCCccCCCCCCCCeEEEEecccccHHHHHHHHH
Confidence 5689999998633222 3333321 2 2 24455443333221 123456677765554 444444
Q ss_pred hhCCCccCCceEEEE
Q 025517 76 RLDGRVVDGREITVQ 90 (251)
Q Consensus 76 ~l~g~~i~g~~l~v~ 90 (251)
......+.|.+|.+.
T Consensus 84 ~k~~vtykg~pirls 98 (100)
T 2w7a_A 84 EKGRVTLKGKPIRLT 98 (100)
T ss_dssp HHCCEEETTEEEEEE
T ss_pred HhCceeeCCcceeec
Confidence 455678899998875
No 271
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=51.42 E-value=24 Score=24.41 Aligned_cols=47 Identities=13% Similarity=0.126 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHhhc-CC---CeeEE-EEccCCCCCCcceEEEEEEecHHHHHH
Q 025517 25 FRTTADDLFPLFEK-YG---KVVDV-FIPRDRRTGDSRGFAFVRYKYADEAQK 72 (251)
Q Consensus 25 ~~~t~~~L~~~f~~-~G---~i~~v-~i~~~~~~g~~~g~afV~f~~~~~A~~ 72 (251)
..++..+|++.+.+ |+ ++..| .|......|...|||.| |++.+.|++
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 45677777776653 33 33333 44444445566777755 667666654
No 272
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=50.73 E-value=37 Score=25.19 Aligned_cols=48 Identities=23% Similarity=0.226 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHhhc-CC---CeeEE-EEccCCCCCCcceEEEEEEecHHHHHHH
Q 025517 25 FRTTADDLFPLFEK-YG---KVVDV-FIPRDRRTGDSRGFAFVRYKYADEAQKA 73 (251)
Q Consensus 25 ~~~t~~~L~~~f~~-~G---~i~~v-~i~~~~~~g~~~g~afV~f~~~~~A~~A 73 (251)
..++..||.+.+.. |+ +++.| .|......|...|||+| |++.+.|...
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 35677788777754 44 23333 34344344556667765 6677666543
No 273
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=50.67 E-value=35 Score=20.66 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=36.4
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEe-cHHHHHHHHhh
Q 025517 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK-YADEAQKAVDR 76 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~-~~~~A~~Ai~~ 76 (251)
.+|.| |+.-..-...|+..+.....| .+.+.... +-+.|+|. +.+....+|+.
T Consensus 4 ~~~~v-gm~C~~C~~~i~~~l~~~~gV-~v~v~~~~------~~~~v~~~~~~~~i~~~i~~ 57 (68)
T 3iwl_A 4 HEFSV-DMTCGGCAEAVSRVLNKLGGV-KYDIDLPN------KKVCIESEHSMDTLLATLKK 57 (68)
T ss_dssp EEEEE-CCCSHHHHHHHHHHHHHHCSE-EEEEETTT------TEEEEEESSCHHHHHHHHHT
T ss_pred EEEEE-CcCcHHHHHHHHHHHHcCCCe-EEEEEcCC------CEEEEEecCCHHHHHHHHHH
Confidence 46778 887666677888888887667 77765542 34677774 55666667664
No 274
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=50.57 E-value=21 Score=24.30 Aligned_cols=63 Identities=13% Similarity=0.085 Sum_probs=36.5
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeeEEEEcc-CCCCCCcceEEEEEEe--cHHHHHHHHhhhCC
Q 025517 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPR-DRRTGDSRGFAFVRYK--YADEAQKAVDRLDG 79 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~-~~~~g~~~g~afV~f~--~~~~A~~Ai~~l~g 79 (251)
.|.|.=....+.+..|-++...||.-.+|..-. +...+...|+-+|++. +.++.++|++.|..
T Consensus 22 lvrL~f~g~~~~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~ 87 (98)
T 3ced_A 22 IVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIE 87 (98)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEEECCCccCchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHH
Confidence 444443334556667777777887433321111 1224455688888887 36677888877643
No 275
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=50.55 E-value=46 Score=21.20 Aligned_cols=59 Identities=10% Similarity=0.159 Sum_probs=33.8
Q ss_pred EEEecCCCCCCHHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEE--EEEecHHHHHHHHhhhCCC
Q 025517 18 LLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAF--VRYKYADEAQKAVDRLDGR 80 (251)
Q Consensus 18 l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~af--V~f~~~~~A~~Ai~~l~g~ 80 (251)
|.|......-.-.+|..+|...| .|..+.+.... + ..... |+..+.+..+.+++.|...
T Consensus 8 l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~--~--~~~~~i~v~~~~~~~l~~l~~~L~~~ 69 (88)
T 2ko1_A 8 IRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKD--G--IFTCNLMIFVKNTDKLTTLMDKLRKV 69 (88)
T ss_dssp EEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECS--S--EEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred EEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcC--C--EEEEEEEEEECCHHHHHHHHHHHhcC
Confidence 33433333334678889998887 67777665431 1 12222 3344667777777776543
No 276
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=49.82 E-value=33 Score=26.37 Aligned_cols=50 Identities=8% Similarity=-0.038 Sum_probs=34.0
Q ss_pred CcEEEEecCCCCCCHHH--------HHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecH
Q 025517 15 TYSLLVLNITFRTTADD--------LFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYA 67 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~--------L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 67 (251)
...=||-.||.+++.++ ++++|..+|-|..+.|..+. . ..-.|.|.|.+.
T Consensus 70 lare~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~~~-~--~NpHaHim~t~R 127 (185)
T 2ns6_A 70 LFKEVEFALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHAGG-G--ENPHCHLMISER 127 (185)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCEEEEEEEET-T--TEEEEEEEECCB
T ss_pred EEEEEEEECCccCCHHHHHHHHHHHHHHHHHhcCCEEEEEEEcCC-C--CCceEEEEEeec
Confidence 44557779999998765 44556667888888887632 1 224688877654
No 277
>3fjv_A Uncharacterized novel protein; YP_111841.1, novel protein of unknown function; HET: MSE; 1.90A {Burkholderia pseudomallei K96243}
Probab=48.53 E-value=22 Score=27.63 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=38.2
Q ss_pred CHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCc------cCCc-eEEEE
Q 025517 28 TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRV------VDGR-EITVQ 90 (251)
Q Consensus 28 t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~------i~g~-~l~v~ 90 (251)
.+++|...+..|.++. +..+..+..-||+|.+.++...++..|.|.. |+|. .|...
T Consensus 66 ~~~~I~~Ei~aYnpLi-------P~~~~l~ATl~IE~~d~~er~~~L~~L~Gie~~v~l~v~~~~~V~ai 128 (194)
T 3fjv_A 66 DEDGIQAELDAYLPLV-------PDGSNLKATLQIEYENETQRRAALARLVGIEDRVFLRVDDEAPVYAI 128 (194)
T ss_dssp SHHHHHHHHHHHGGGC-------CCSSEEEEEEEECCSSHHHHHHHHHHTTTGGGSEEEEETTSCCEECE
T ss_pred CHHHHHHHHHHhcccC-------CCCCcEEEEEEEEcCCHHHHHHHHHHhcCccceEEEEECCcceeeee
Confidence 4455555555555431 2345556778999999999999999999863 4665 55543
No 278
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=48.31 E-value=45 Score=26.67 Aligned_cols=78 Identities=12% Similarity=0.208 Sum_probs=41.0
Q ss_pred CcEEEEecCCCCCC--HHHHHHHhhc-----CCC--------eeEEEEccCCCCC--CcceEEEEEEecHHHHHH---HH
Q 025517 15 TYSLLVLNITFRTT--ADDLFPLFEK-----YGK--------VVDVFIPRDRRTG--DSRGFAFVRYKYADEAQK---AV 74 (251)
Q Consensus 15 ~~~l~V~nLp~~~t--~~~L~~~f~~-----~G~--------i~~v~i~~~~~~g--~~~g~afV~f~~~~~A~~---Ai 74 (251)
-+.|.|-|||.... +..+..+|.. |.. |..+.-..++.+. .......|.|....+-+. |.
T Consensus 52 r~NIRIiGVPEgee~~~kgaenlf~eII~EnfPnL~ke~diqV~ea~Rsp~~~~~kr~tPR~IIvK~~~~~~KErILkaa 131 (233)
T 2yko_A 52 RPNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAA 131 (233)
T ss_dssp TTEEEEESCCCCTTCCHHHHHHHHHHHHHHHCTTCC---CCCEEEEEEC-------CCSCCCEEEEESSHHHHHHHHHHH
T ss_pred ccceeEeecCCCcccccccHHHHHHHHHHHhCCCCccccceeeechhcCCCCCCCCCCCCCeEEEEecccccHHHHHHHH
Confidence 36799999998765 4444444432 322 3333322221111 112346667766555444 44
Q ss_pred hhhCCCccCCceEEEEec
Q 025517 75 DRLDGRVVDGREITVQFA 92 (251)
Q Consensus 75 ~~l~g~~i~g~~l~v~~a 92 (251)
.......+.|.+|.+.-.
T Consensus 132 R~k~~vtykG~pIrlsaD 149 (233)
T 2yko_A 132 REKGRVTLKGKPIRLTVD 149 (233)
T ss_dssp HTTSCEEETTEEEEEEEC
T ss_pred HHhcccccCCCceEEeCC
Confidence 444567889999887543
No 279
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=48.30 E-value=46 Score=23.54 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=9.6
Q ss_pred EEEecCCCCCCHHHHHHHhhcCCCe
Q 025517 18 LLVLNITFRTTADDLFPLFEKYGKV 42 (251)
Q Consensus 18 l~V~nLp~~~t~~~L~~~f~~~G~i 42 (251)
|.|.++.-..-...|...+.....|
T Consensus 78 ~~v~gm~C~~C~~~ie~~l~~~~gv 102 (151)
T 1p6t_A 78 FDIEGMTCAACANRIEKRLNKIEGV 102 (151)
T ss_dssp EEESSCCSSSHHHHHHHHHTTSSSE
T ss_pred EEecCCCCHHHHHHHHHHHhcCCCc
Confidence 3333433333333344444433333
No 280
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=47.80 E-value=21 Score=26.30 Aligned_cols=55 Identities=18% Similarity=0.284 Sum_probs=33.9
Q ss_pred EEEecCCCCCCHHHHHHHhhc-CC-CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHh
Q 025517 18 LLVLNITFRTTADDLFPLFEK-YG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (251)
Q Consensus 18 l~V~nLp~~~t~~~L~~~f~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~ 75 (251)
.||--+...++..+|++.++. || .|..|..+.-+ .| .--|||.+....+|.+...
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~-~g--~KKAyV~L~~~~daldvAn 137 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRP-NG--TKKAYVRLTADYDALDIAN 137 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECT-TS--CEEEEEEECTTCCHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcC-CC--ceEEEEEeCCCCcHHHHHH
Confidence 445556778888888888875 45 45666444332 12 1338999887666665443
No 281
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=47.45 E-value=23 Score=23.63 Aligned_cols=55 Identities=24% Similarity=0.276 Sum_probs=35.6
Q ss_pred EEEecCCCCCCHHHHHHHhhc-CC-CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHh
Q 025517 18 LLVLNITFRTTADDLFPLFEK-YG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (251)
Q Consensus 18 l~V~nLp~~~t~~~L~~~f~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~ 75 (251)
.|+-.++..++..+|++.++. || .|..|..+.-+. + .--|||.+....+|.....
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~-~--~KKA~VtL~~g~~aid~~~ 80 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMD-G--EKKAVVRLSEDDDAQEVAS 80 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-S--SEEEEEEECTTSCHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCC-C--ceEEEEEECCCCcHHHHHH
Confidence 455567888999999999975 55 566665443321 1 1348999987666555433
No 282
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=46.42 E-value=60 Score=21.88 Aligned_cols=62 Identities=15% Similarity=0.104 Sum_probs=38.1
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeeEEEEcc-CCCCCCcceEEEEEEe-cHHHHHHHHhhhC
Q 025517 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPR-DRRTGDSRGFAFVRYK-YADEAQKAVDRLD 78 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~-~~~~g~~~g~afV~f~-~~~~A~~Ai~~l~ 78 (251)
.|.|.-....+.+..|.++...||.-.+|..-. +...+...|+-+|++. +.++.++|+..|.
T Consensus 25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~ 88 (101)
T 2qrr_A 25 LVRMEFTGATVDAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLR 88 (101)
T ss_dssp EEEEEECTTSCSSCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHH
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHH
Confidence 455554455667778888888998533332111 2224456688888887 3555677777664
No 283
>3rz2_A Protein tyrosine phosphatase type IVA 1; tyrosine phosphatase, dual specific phosphatase, COMP with peptide, hydrolase; 2.80A {Rattus norvegicus} PDB: 1x24_A 1zcl_A
Probab=46.08 E-value=29 Score=26.29 Aligned_cols=78 Identities=13% Similarity=0.179 Sum_probs=42.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCC-CC---cceEEEEEEe-------cHHHHHHHHhhhCCC--
Q 025517 14 DTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRT-GD---SRGFAFVRYK-------YADEAQKAVDRLDGR-- 80 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~-g~---~~g~afV~f~-------~~~~A~~Ai~~l~g~-- 80 (251)
.+..+++...|...+.++..+++.++| |..|..+..... .. ..++.|+.+. +.+....+++.++..
T Consensus 35 ~~~r~I~tq~P~~~t~~~~~~~L~~~g-i~~Iv~l~~~~~~~~~~~~~~i~~~~~pi~d~~~~~~~~~~~~~~~i~~~~~ 113 (189)
T 3rz2_A 35 KNMRFLITHNPTNATLNKFIEELKKYG-VTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVDDWLSLVKIKFR 113 (189)
T ss_dssp TTEEEEEECCCCTTTHHHHHHHHHTTT-EEEEEECSCCCSCCHHHHHSSCEEEECCCCSSSCCCSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEeCCCCcccHHHHHHHHHHcC-CcEEEEeCCCcCCHHHHHHcCcEEEEecCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 456788888998888888888888887 333333222211 11 1255666654 223344444444322
Q ss_pred ccCCceEEEEec
Q 025517 81 VVDGREITVQFA 92 (251)
Q Consensus 81 ~i~g~~l~v~~a 92 (251)
.-.+.+|.|...
T Consensus 114 ~~~~~~VlVHC~ 125 (189)
T 3rz2_A 114 EEPGCCIAVHCV 125 (189)
T ss_dssp HSTTCEEEEECS
T ss_pred hCCCCcEEEECC
Confidence 124556666544
No 284
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}
Probab=45.98 E-value=43 Score=19.53 Aligned_cols=55 Identities=15% Similarity=0.122 Sum_probs=37.2
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEec----HHHHHHHHhh
Q 025517 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDR 76 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~A~~Ai~~ 76 (251)
.+|.|.|+.-..-...|...+.....|..+.+.... +.+.|.|.. .+....+|+.
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~ 63 (71)
T 2ldi_A 5 QQMQVGGMRCAACASSIERALERLKGVAEASVTVAT------GRLTVTYDPKQVSEITIQERIAA 63 (71)
T ss_dssp EEEEEETCTTSGGGHHHHTGGGGCSSEEEEEEETTT------TEEEEEECTTTCCTHHHHHHHHT
T ss_pred EEEEECCccCHHHHHHHHHHHhcCCCeeEEEEEecC------CEEEEEECCCCCCHHHHHHHHHH
Confidence 358888888766667788888888777777665432 557788863 3444555553
No 285
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=45.25 E-value=24 Score=26.27 Aligned_cols=55 Identities=25% Similarity=0.341 Sum_probs=34.3
Q ss_pred EEEecCCCCCCHHHHHHHhhc-CC-CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHh
Q 025517 18 LLVLNITFRTTADDLFPLFEK-YG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (251)
Q Consensus 18 l~V~nLp~~~t~~~L~~~f~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~ 75 (251)
.||--+...++..+|++.++. || .|..|..+.-+ .| .--|||.+....+|.+...
T Consensus 89 ~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p-~g--~KKAyV~La~~~dAldvAn 145 (150)
T 4a17_R 89 TMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTI-TG--NKKAYIRLAADSDSLTLAN 145 (150)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT-TS--CEEEEEEECSSSCHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcC-CC--cEEEEEEcCCCCcHHHHHH
Confidence 344556778889999888875 45 45666444332 12 1348999987666665543
No 286
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}
Probab=44.84 E-value=12 Score=24.38 Aligned_cols=56 Identities=16% Similarity=-0.016 Sum_probs=34.9
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEe-cHHHHHHHHhh
Q 025517 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK-YADEAQKAVDR 76 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~-~~~~A~~Ai~~ 76 (251)
..+|.|.++.-..-...|...+.....|..+.+.... +.+.|+|. +.+....+|+.
T Consensus 23 ~~~l~V~Gm~C~~C~~~Ie~aL~~~~GV~~v~v~l~~------~~~~V~~~~~~~~i~~~i~~ 79 (85)
T 2k2p_A 23 GLSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPAS------RTVVVGGVSDAAHIAEIITA 79 (85)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHHSTTCEEEEETTT------TEEEEESCCCHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHhcCCCeeEEEEECCC------CEEEEEecCCHHHHHHHHHH
Confidence 3456676766555556788888877667666665432 45667664 44555666664
No 287
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=44.84 E-value=38 Score=23.84 Aligned_cols=29 Identities=7% Similarity=0.106 Sum_probs=11.8
Q ss_pred EEEecCCCCCCHHHHHHHhhcCCCeeEEE
Q 025517 18 LLVLNITFRTTADDLFPLFEKYGKVVDVF 46 (251)
Q Consensus 18 l~V~nLp~~~t~~~L~~~f~~~G~i~~v~ 46 (251)
|.|.|+.-..-...|+..|.....|..+.
T Consensus 84 ~~v~gm~C~~C~~~ie~~l~~~~gv~~~~ 112 (149)
T 2ew9_A 84 LTITGMTCASCVHNIESKLTRTNGITYAS 112 (149)
T ss_dssp EEEESCCSHHHHHHHHHHHHHSSSCCEEE
T ss_pred EEEEeccCHHHHHHHHHHHhcCCCeEEEE
Confidence 44444443333334444444443343333
No 288
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=44.62 E-value=21 Score=31.80 Aligned_cols=53 Identities=23% Similarity=0.174 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHhh----cCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhh
Q 025517 24 TFRTTADDLFPLFE----KYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77 (251)
Q Consensus 24 p~~~t~~~L~~~f~----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 77 (251)
..+.+.-+|..+|. .||.|+.+.|...+. ......+++.|.+.++|.+|+..+
T Consensus 195 ~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~-p~~~~~~~~~~~~~~~a~~~~~~~ 251 (476)
T 3pm9_A 195 KKDNTGYDLRDLFIGAEGTLGIITAATLKLFPK-PRAVETAFVGLQSPDDALKLLGIA 251 (476)
T ss_dssp SCCCSSCCCHHHHTTSTTSSCEEEEEEEECEEC-CSEEEEEEEEESCHHHHHHHHHHH
T ss_pred cCCCCCcCHHHHhccCCCCcEEEEEEEEEEeec-CceeEEEEEEcCCHHHHHHHHHHH
Confidence 33333345666653 467888887765542 334467889999999998877655
No 289
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=43.73 E-value=21 Score=26.59 Aligned_cols=55 Identities=16% Similarity=0.234 Sum_probs=32.1
Q ss_pred EEEecCCCCCCHHHHHHHhhc-CC-CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHh
Q 025517 18 LLVLNITFRTTADDLFPLFEK-YG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (251)
Q Consensus 18 l~V~nLp~~~t~~~L~~~f~~-~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~ 75 (251)
.||-.+...++..+|++.++. || .|..|..+.-+ .| .--|||.+....+|.+...
T Consensus 91 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~-~g--~KKAyV~L~~~~daldvAn 147 (152)
T 3iz5_X 91 TLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRP-DG--KKKAYVKLTPDYDALDVAN 147 (152)
T ss_dssp EEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECT-TS--SEEEEEEECTTSCHHHHHG
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcC-CC--ceEEEEEcCCCCcHHHHHH
Confidence 344445667777888877765 44 45555443322 11 1348888887666665544
No 290
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=43.55 E-value=14 Score=31.91 Aligned_cols=48 Identities=15% Similarity=0.100 Sum_probs=33.2
Q ss_pred EEecCCC---CCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHh
Q 025517 19 LVLNITF---RTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (251)
Q Consensus 19 ~V~nLp~---~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~ 75 (251)
+||||.. .-....+.++..+||+|..+.+.. .-+|...+.+.++.++.
T Consensus 20 ~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g~---------~~~vvv~~p~~i~~vl~ 70 (479)
T 3tbg_A 20 GLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLAW---------TPVVVLNGLAAVREALV 70 (479)
T ss_dssp TTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEETT---------EEEEEEEHHHHHHHHHT
T ss_pred cccchHhhcCCCHHHHHHHHHHHhCCEEEEEECC---------eeEEEECCHHHHHHHHH
Confidence 4677653 223456778889999998887742 24566778888888765
No 291
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=43.55 E-value=18 Score=29.13 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=20.2
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcC
Q 025517 16 YSLLVLNITFRTTADDLFPLFEKY 39 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~ 39 (251)
..+.|+|||+.++...|..++...
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~ 114 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYT 114 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTG
T ss_pred ceEEEECCCCCccHHHHHHHHhcC
Confidence 358899999999999988888754
No 292
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}
Probab=43.48 E-value=64 Score=20.83 Aligned_cols=56 Identities=13% Similarity=0.024 Sum_probs=39.1
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEec----HHHHHHHHhhh
Q 025517 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDRL 77 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~A~~Ai~~l 77 (251)
.+|.|.++.-......|...+.....|..+.+.... +.+.|.|.. .+....+|..+
T Consensus 18 ~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 77 (95)
T 2kkh_A 18 SYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVPS------RTVIVVHDSLLISPFQIAKALNEA 77 (95)
T ss_dssp EEEEETTCCTTTTHHHHHHHHHHSSSEEEEEEETTT------TEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEccC------CEEEEEECCCCCCHHHHHHHHHHc
Confidence 467888888777778899999888778777665432 567888863 44455566543
No 293
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=43.47 E-value=23 Score=24.29 Aligned_cols=46 Identities=17% Similarity=0.206 Sum_probs=21.3
Q ss_pred CCCHHHHHHHhhc-CC---CeeEE-EEccCCCCCCcceEEEEEEecHHHHHH
Q 025517 26 RTTADDLFPLFEK-YG---KVVDV-FIPRDRRTGDSRGFAFVRYKYADEAQK 72 (251)
Q Consensus 26 ~~t~~~L~~~f~~-~G---~i~~v-~i~~~~~~g~~~g~afV~f~~~~~A~~ 72 (251)
.++..+|++.+.+ |+ .++.| .|......|...|||+| |++.+.|+.
T Consensus 30 tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 30 TPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp CCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 5567777766643 33 23333 22222223444555544 555554444
No 294
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Probab=42.68 E-value=51 Score=20.02 Aligned_cols=55 Identities=16% Similarity=0.153 Sum_probs=36.0
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEec----HHHHHHHHhh
Q 025517 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY----ADEAQKAVDR 76 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~A~~Ai~~ 76 (251)
.+|.|.|+.-......|...+.....|..+.+.... +.+.|.|.. .+....+|..
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~ 63 (80)
T 1jww_A 5 AEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFAL------ETVTVEYNPKEASVSDLKEAVDK 63 (80)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHTSTTEEECCCCSSS------SEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHH
Confidence 357888887665667788888887767666543322 567888863 3445555654
No 295
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=41.73 E-value=23 Score=24.47 Aligned_cols=55 Identities=15% Similarity=0.150 Sum_probs=33.5
Q ss_pred CCCHHHHHHHhhcCCCeeEEEEc-cCCCCCCcceEEEEEEe-cHHHHHHHHhhhCCC
Q 025517 26 RTTADDLFPLFEKYGKVVDVFIP-RDRRTGDSRGFAFVRYK-YADEAQKAVDRLDGR 80 (251)
Q Consensus 26 ~~t~~~L~~~f~~~G~i~~v~i~-~~~~~g~~~g~afV~f~-~~~~A~~Ai~~l~g~ 80 (251)
.+.+..|-++...||.-.+|..- .+...+...|+.+|++. +.++.++|++.|...
T Consensus 32 ~~~~PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~ 88 (106)
T 3dhx_A 32 SVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEH 88 (106)
T ss_dssp CTTCCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHT
T ss_pred ccChhHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 44556777888888843333111 12224556688888887 456677777766543
No 296
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=41.71 E-value=49 Score=23.71 Aligned_cols=36 Identities=14% Similarity=0.044 Sum_probs=20.4
Q ss_pred CCCeeEEEEccCCCCCCcceEEEEE-EecHHHHHHHHhhhC
Q 025517 39 YGKVVDVFIPRDRRTGDSRGFAFVR-YKYADEAQKAVDRLD 78 (251)
Q Consensus 39 ~G~i~~v~i~~~~~~g~~~g~afV~-f~~~~~A~~Ai~~l~ 78 (251)
+=.|+.|.|..|-. ...+||. |-+.++.+.+++.|+
T Consensus 43 ~vtVt~V~vS~Dl~----~AkVyvs~~~~~~~~~~~~~~L~ 79 (129)
T 2e7g_A 43 NVELSKVSLTPDFS----ACRAYWKTTLSAEQNAHMEAVLQ 79 (129)
T ss_dssp TCCEEEEEECTTSC----CEEEEECCCSCHHHHHHHHHHHH
T ss_pred eeEEEEEEECCCCc----EEEEEEEecCChhhHHHHHHHHH
Confidence 34688888876642 2456666 545544444444444
No 297
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=41.70 E-value=38 Score=22.90 Aligned_cols=62 Identities=10% Similarity=0.105 Sum_probs=36.3
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeeEEEEcc-CCCCCCcceEEEEEEec-HHHHHHHHhhhC
Q 025517 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPR-DRRTGDSRGFAFVRYKY-ADEAQKAVDRLD 78 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~-~~~~g~~~g~afV~f~~-~~~A~~Ai~~l~ 78 (251)
.|.|.-....+.+..|-.+...||.-.+|..-. +...+...|+-+|++.- .++.++|+..|.
T Consensus 25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~ 88 (100)
T 2qsw_A 25 IVRLLFHGEQAKLPIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLR 88 (100)
T ss_dssp EEEEEEESCSCSSCHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHH
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeceEcCCeeEEEEEEEEECCHHHHHHHHHHHH
Confidence 444444445566677778888887433332111 22244556888888873 556677777664
No 298
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=41.43 E-value=94 Score=22.14 Aligned_cols=53 Identities=0% Similarity=-0.017 Sum_probs=40.3
Q ss_pred cCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCC
Q 025517 22 NITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG 79 (251)
Q Consensus 22 nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 79 (251)
.++... .+++.+.+..+-+|..|..... ..--++.|.+.+.++.+..+..+.+
T Consensus 72 ~~~~~~-~~~~~~~l~~~p~V~~~~~~tG----~~d~~~~v~~~~~~~l~~~~~~l~~ 124 (144)
T 2cfx_A 72 TVKNAD-YERFKSYIQTLPNIEFCYRIAG----AACYMLKINAESLEAVEDFINKTSP 124 (144)
T ss_dssp EEGGGC-HHHHHHHHHTCTTEEEEEEEES----SSSEEEEEEESSHHHHHHHHHHHTT
T ss_pred EECccc-HHHHHHHHhcChhhheeeeeeC----CCCEEEEEEECCHHHHHHHHHHhcC
Confidence 455443 6778888899999999987643 3336788889999999999988765
No 299
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=41.11 E-value=28 Score=23.34 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=21.2
Q ss_pred CeeEEEEccCCCCCCcceEEEEEEec
Q 025517 41 KVVDVFIPRDRRTGDSRGFAFVRYKY 66 (251)
Q Consensus 41 ~i~~v~i~~~~~~g~~~g~afV~f~~ 66 (251)
+|+.|.|..-...|+.++||=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57788777766678899999999975
No 300
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.94 E-value=47 Score=22.08 Aligned_cols=53 Identities=17% Similarity=0.198 Sum_probs=34.6
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEe-cHHHHHHHHhh
Q 025517 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK-YADEAQKAVDR 76 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~-~~~~A~~Ai~~ 76 (251)
+|.|. +.-..-...|+..|.....|..+.+.... +.+.|+|. +.+....+|+.
T Consensus 22 ~l~V~-m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~------~~~~V~~~~~~~~i~~~i~~ 75 (98)
T 2crl_A 22 EFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLED------QMVLVHTTLPSQEVQALLEG 75 (98)
T ss_dssp EEEEC-CCSHHHHHHHHHTTTTCTTCCEEEEETTT------TEEEEEESSCHHHHHHHHHT
T ss_pred EEEEe-eECHHHHHHHHHHHHcCCCceEEEEECCC------CEEEEEEeCCHHHHHHHHHH
Confidence 45555 55444557788999888778777775542 45777775 45556666664
No 301
>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.58.4.16
Probab=40.91 E-value=81 Score=21.27 Aligned_cols=18 Identities=6% Similarity=0.117 Sum_probs=15.2
Q ss_pred eEEEEEEecHHHHHHHHh
Q 025517 58 GFAFVRYKYADEAQKAVD 75 (251)
Q Consensus 58 g~afV~f~~~~~A~~Ai~ 75 (251)
...+|+|.+.+.|++++.
T Consensus 55 ~~viieFpS~~aa~~~~~ 72 (99)
T 2fiu_A 55 RNVVIEFPSVQHAIDCYN 72 (99)
T ss_dssp EEEEEEESSHHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHc
Confidence 578899999999988755
No 302
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=40.76 E-value=3.2 Score=27.27 Aligned_cols=65 Identities=9% Similarity=0.000 Sum_probs=41.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEE-EEecHHHHHHHHhhhCCCccC
Q 025517 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFV-RYKYADEAQKAVDRLDGRVVD 83 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV-~f~~~~~A~~Ai~~l~g~~i~ 83 (251)
...+.|.|+-+......+.|..-+...|....|. . .+.. --.+| -|.+.++|+.++..|...-|.
T Consensus 7 ~~~~~vQvGaF~~~~~A~~l~~~L~~~G~~a~i~--~---~~~~-yRV~vGpf~s~~~A~~~~~~L~~~g~~ 72 (81)
T 1uta_A 7 ERRWMVQCGSFRGAEQAETVRAQLAFEGFDSKIT--T---NNGW-NRVVIGPVKGKENADSTLNRLKMAGHT 72 (81)
T ss_dssp CCBCCCBCCEESCHHHHHHHHHHHHHHTCCEEEE--E---CSSS-EEEEESSCBTTTHHHHHHHHHHHHCCS
T ss_pred CccEEEEEEEcCCHHHHHHHHHHHHhCCCCeEEE--e---CCcE-EEEEECCcCCHHHHHHHHHHHHHcCCC
Confidence 3467888998888777788888887777444433 1 1111 11333 677889999888877653333
No 303
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=40.65 E-value=19 Score=21.49 Aligned_cols=53 Identities=15% Similarity=0.138 Sum_probs=33.1
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhh
Q 025517 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 76 (251)
+|.|.|+.-..-...|...+... .|..+.+.... +.+.|.|...+....+|+.
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~~------~~~~v~~~~~~~i~~~i~~ 56 (67)
T 2kyz_A 4 VLYVPDISCNHCKMRISKALEEL-GVKNYEVSVEE------KKVVVETENLDSVLKKLEE 56 (67)
T ss_dssp EEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETTT------TEEEEECSCHHHHHHHHHT
T ss_pred EEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECCC------CEEEEEECCHHHHHHHHHH
Confidence 46666666555556788888877 67666664432 5578888754344455553
No 304
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=40.58 E-value=17 Score=29.19 Aligned_cols=25 Identities=8% Similarity=-0.093 Sum_probs=21.0
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCC
Q 025517 16 YSLLVLNITFRTTADDLFPLFEKYG 40 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G 40 (251)
..+.|+|||+.++...|..++....
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~ 120 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKD 120 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGG
T ss_pred CcEEEEECchhccHHHHHHHHhcCC
Confidence 3588999999999999999987643
No 305
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=40.51 E-value=15 Score=33.77 Aligned_cols=50 Identities=6% Similarity=0.056 Sum_probs=33.4
Q ss_pred CHHHHHHHhh----cCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhC
Q 025517 28 TADDLFPLFE----KYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (251)
Q Consensus 28 t~~~L~~~f~----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 78 (251)
+.-+|..+|. .||.|+.+.|...+. .....++++.|.+.++|.+|+..+-
T Consensus 286 ~g~dl~~~~~GseGtlGIIT~~tlrl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 339 (584)
T 2uuu_A 286 AGINYKHIILGSEGTLGIITEAVMKVHAV-PQAVEYYGFLFPTFAHAVSALQQIR 339 (584)
T ss_dssp -CCCTHHHHTTCTTSSCEEEEEEEECEEC-CSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred CCcchhhhhccCCCCcEEEEEEEEEEEec-ccceEEEEEEcCCHHHHHHHHHHHH
Confidence 3345666653 567888888766542 2334678899999999988877553
No 306
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=40.38 E-value=36 Score=29.63 Aligned_cols=49 Identities=16% Similarity=0.156 Sum_probs=30.1
Q ss_pred EEEecCCCC--CCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHh
Q 025517 18 LLVLNITFR--TTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (251)
Q Consensus 18 l~V~nLp~~--~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~ 75 (251)
-+||||..- .....|.++..+||.|..+.+. +.-+|...+.+.++.++.
T Consensus 18 P~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvv~dp~~i~~il~ 68 (507)
T 3pm0_A 18 PLIGNAAAVGQAAHLSFARLARRYGDVFQIRLG---------SCPIVVLNGERAIHQALV 68 (507)
T ss_dssp ----------CCHHHHHHHHHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHT
T ss_pred CeeCchhhcCccHHHHHHHHHHHhCCEEEEEEC---------CccEEEECCHHHHHHHHH
Confidence 457777532 2345677888999999888763 335777889998888875
No 307
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=40.29 E-value=9.4 Score=31.00 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=23.0
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeeEE
Q 025517 17 SLLVLNITFRTTADDLFPLFEKYGKVVDV 45 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v 45 (251)
...|+|||+.++...|..++...+.+..+
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~ 126 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDM 126 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheE
Confidence 34899999999999999999866555443
No 308
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=40.22 E-value=56 Score=22.78 Aligned_cols=54 Identities=11% Similarity=0.065 Sum_probs=30.7
Q ss_pred EEEecCCCCCCHHHHHHHhhc-------CCCeeEEEEccCCCCCCcc--eEE-EEEEecHHHHHH
Q 025517 18 LLVLNITFRTTADDLFPLFEK-------YGKVVDVFIPRDRRTGDSR--GFA-FVRYKYADEAQK 72 (251)
Q Consensus 18 l~V~nLp~~~t~~~L~~~f~~-------~G~i~~v~i~~~~~~g~~~--g~a-fV~f~~~~~A~~ 72 (251)
|.+-.|...++++++.++... ...|..+.+-.+.. +... .++ +++|++.++.+.
T Consensus 25 IVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s-~~~~g~d~~l~~~F~s~edl~~ 88 (116)
T 3bgu_A 25 IALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLG-LAAGNYDFAVVADLDGEDGFRA 88 (116)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCS-CSTTCCSEEEEEEEEHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCC-CCCCCeeEEEEEEECCHHHHHH
Confidence 444578888888776655543 23456666555432 2222 334 557877776654
No 309
>1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21
Probab=40.02 E-value=55 Score=22.54 Aligned_cols=35 Identities=20% Similarity=0.175 Sum_probs=23.5
Q ss_pred HHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEec
Q 025517 29 ADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY 66 (251)
Q Consensus 29 ~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 66 (251)
+.+|.+.+...| |.+..|..+..+ +.-|+++++.+
T Consensus 26 WPEv~~~L~~aG-i~~ysIfl~~~~--~~LF~~~E~~d 60 (104)
T 1x8d_A 26 WPELEAVLKSHG-AHNYAIYLDKAR--NLLFAMVEIES 60 (104)
T ss_dssp CHHHHHHHHHTT-EEEEEEEEETTT--TEEEEEEEESC
T ss_pred CHHHHHHHHHcC-CeEEEEEEECCC--CeEEEEEEEcC
Confidence 356888888888 555556554322 33688899887
No 310
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=39.41 E-value=23 Score=30.34 Aligned_cols=22 Identities=18% Similarity=0.095 Sum_probs=19.2
Q ss_pred EEEEecCCCCCCHHHHHHHhhc
Q 025517 17 SLLVLNITFRTTADDLFPLFEK 38 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~ 38 (251)
.++|+|||++++..-|..+|..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 5789999999999988888864
No 311
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=38.69 E-value=16 Score=32.81 Aligned_cols=43 Identities=14% Similarity=0.011 Sum_probs=28.4
Q ss_pred HHHHHh--hcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHH
Q 025517 31 DLFPLF--EKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAV 74 (251)
Q Consensus 31 ~L~~~f--~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai 74 (251)
+|..+| ..+|.|+.+.|...+. ......+++.|.+.++|.+|+
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~-p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPK-PPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEEC-CSEEEEEEEEECCGGGHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEec-CCeEEEEEEEeCCHHHHHHHH
Confidence 355666 3689999988776542 333456788898877765543
No 312
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=38.61 E-value=16 Score=23.97 Aligned_cols=52 Identities=19% Similarity=0.210 Sum_probs=33.5
Q ss_pred EEecCCCCCCHHHHHHHh-hcCC--------CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhh
Q 025517 19 LVLNITFRTTADDLFPLF-EKYG--------KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77 (251)
Q Consensus 19 ~V~nLp~~~t~~~L~~~f-~~~G--------~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 77 (251)
++--+|..++..+|.+.. .+|+ ....+.+.-. .| .||++.+.++.+-|++.+
T Consensus 4 ~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDE--dG-----D~Vti~sddDl~~A~~~~ 64 (77)
T 1pqs_A 4 FTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDE--DG-----DFVVLGSDEDWNVAKEML 64 (77)
T ss_dssp EEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEET--TT-----EEEECCSTTHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEcC--CC-----CEEEEcCHHHHHHHHHHH
Confidence 344567788877766554 3444 2233444322 33 899999999999999865
No 313
>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}
Probab=38.19 E-value=59 Score=19.38 Aligned_cols=44 Identities=18% Similarity=0.189 Sum_probs=29.7
Q ss_pred cEEEEecCC-CCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhh
Q 025517 16 YSLLVLNIT-FRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76 (251)
Q Consensus 16 ~~l~V~nLp-~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 76 (251)
+.|+.+..| --.+|++.+.....|- |-.|-.|.+.++|+++|..
T Consensus 6 YaV~~G~~~GIy~sW~ec~~qV~g~~-----------------ga~yK~F~t~~eA~~~l~~ 50 (53)
T 3bsu_A 6 YAVRRGRKTGVFLTWNECRAQVDRFP-----------------AARFKKFATEDEAWAFVRK 50 (53)
T ss_dssp EEEEESSSCEEESSHHHHHHHHTTCT-----------------TCEEEEESSHHHHHHHHHC
T ss_pred EEEEeCCCCceECCHHHHHHHhcCCC-----------------CCccCCCCCHHHHHHHHHh
Confidence 345555544 2347777777765441 3478889999999999874
No 314
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=38.17 E-value=55 Score=23.97 Aligned_cols=34 Identities=15% Similarity=0.364 Sum_probs=26.0
Q ss_pred eeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCC
Q 025517 42 VVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR 80 (251)
Q Consensus 42 i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (251)
|..|.++.. ..||.||++...++...+|..+.|.
T Consensus 33 i~~v~vp~~-----fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 33 IYAILAPSR-----VKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEeecC-----CCcEEEEEEEchHHHHHHHhCCCCE
Confidence 556665432 4599999999998888998877765
No 315
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=37.39 E-value=76 Score=22.46 Aligned_cols=73 Identities=11% Similarity=0.221 Sum_probs=42.1
Q ss_pred cEEEEecCCCCCCHHHH---HHHhhcCCCeeEEEEccCCCCCCcceEEEEEEe--cHHHHHHHHhhh-------CCC---
Q 025517 16 YSLLVLNITFRTTADDL---FPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK--YADEAQKAVDRL-------DGR--- 80 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L---~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~--~~~~A~~Ai~~l-------~g~--- 80 (251)
..|.|.++|..+..+-. ..+-..|..-....|+- ...|...|.|. +.+..++|++.| .|.
T Consensus 43 l~i~itgvpeqvrkelakeaerl~~efni~v~y~img-----sgsgvm~i~f~gddlea~ekalkemirqarkfagtvty 117 (170)
T 4hhu_A 43 LVIVITGVPEQVRKELAKEAERLKAEFNINVQYQIMG-----SGSGVMVIVFEGDDLEALEKALKEMIRQARKFAGTVTY 117 (170)
T ss_dssp EEEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEEC-----TTCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEEe-----CCceEEEEEEecCcHHHHHHHHHHHHHHHHhhcceEEE
Confidence 35778899977654321 12223344223333432 22367778886 778888887754 343
Q ss_pred ccCCceEEEEecc
Q 025517 81 VVDGREITVQFAK 93 (251)
Q Consensus 81 ~i~g~~l~v~~a~ 93 (251)
.+.|..|.|.+.-
T Consensus 118 tl~gn~l~i~itg 130 (170)
T 4hhu_A 118 TLSGNRLVIVITG 130 (170)
T ss_dssp EECSSEEEEEEES
T ss_pred EEeCCEEEEEEeC
Confidence 4678877776543
No 316
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=36.06 E-value=28 Score=30.03 Aligned_cols=50 Identities=12% Similarity=0.173 Sum_probs=36.6
Q ss_pred EEEecCCCC---CCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhh
Q 025517 18 LLVLNITFR---TTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76 (251)
Q Consensus 18 l~V~nLp~~---~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 76 (251)
-+||||..- -....+.++..+||.|..+.+. +.-+|.+.+.+.++.++..
T Consensus 19 PliG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g---------~~~~vvv~~~~~v~~il~~ 71 (476)
T 3e6i_A 19 PIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVG---------SQRMVVMHGYKAVKEALLD 71 (476)
T ss_dssp TTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHHT
T ss_pred ccccChhhhccccHhHHHHHHHHHhCCEEEEEEC---------CccEEEECCHHHHHHHHhc
Confidence 456777532 2356788888999999887763 3467888999999998863
No 317
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=35.96 E-value=1.2e+02 Score=21.74 Aligned_cols=53 Identities=13% Similarity=0.207 Sum_probs=39.3
Q ss_pred cCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHH-hhhC
Q 025517 22 NITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAV-DRLD 78 (251)
Q Consensus 22 nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai-~~l~ 78 (251)
.++.....+++.+.+..+-+|..|..+. |..--++.|.+.+.++....+ +.+.
T Consensus 75 ~~~~~~~~~~~~~~l~~~peV~~~~~vt----G~~d~~~~v~~~d~~~l~~~l~~~l~ 128 (152)
T 2cg4_A 75 ILKSAKDYPSALAKLESLDEVTEAYYTT----GHYSIFIKVMCRSIDALQHVLINKIQ 128 (152)
T ss_dssp EESSGGGHHHHHHHHHTCTTEEEEEEES----SSCSEEEEEEESCHHHHHHHHHHTTT
T ss_pred EECCCCCHHHHHHHHhCCcCeEEEEEEe----cccCEEEEEEECCHHHHHHHHHHHhh
Confidence 4554445678899999999999998864 333357788899999998887 3444
No 318
>2j5a_A 30S ribosomal protein S6; ribonucleoprotein, RIBO protein S6, RNA-binding, rRNA-binding, protein folding; 2.3A {Aquifex aeolicus} SCOP: d.58.14.1
Probab=35.92 E-value=86 Score=21.68 Aligned_cols=55 Identities=9% Similarity=0.106 Sum_probs=27.9
Q ss_pred EEEEecCCCCCCHHHHHHHhhcC--------CCeeEEEEcc-----CCCCCCcce-EEEEEEec-HHHHHHH
Q 025517 17 SLLVLNITFRTTADDLFPLFEKY--------GKVVDVFIPR-----DRRTGDSRG-FAFVRYKY-ADEAQKA 73 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~~--------G~i~~v~i~~-----~~~~g~~~g-~afV~f~~-~~~A~~A 73 (251)
++||- .+.++++++..++..| |.|..+..+- -+......| |.++.|.. ...+.+-
T Consensus 12 ~~~Il--~p~l~~e~~~~~v~~~~~~i~~~Gg~i~~~e~wG~R~LAY~I~K~~~G~Y~l~~f~a~~~~~i~e 81 (110)
T 2j5a_A 12 TVFAV--KPTLSEEEMKKKFEQVKEFIKQKGGEILYEEDWGMRQLAYPIQKFNNARYFLVQFKTENPQLPNE 81 (110)
T ss_dssp EEEEE--CTTSCHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEECSSCSSSCSEEEEEEEEEEESCTTHHHH
T ss_pred EEEEE--CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeCCHHHHHH
Confidence 44543 5566777766555443 4566654331 112223334 67778877 4444333
No 319
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=35.33 E-value=38 Score=23.34 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=20.9
Q ss_pred CeeEEEEccCCCCCCcceEEEEEEec
Q 025517 41 KVVDVFIPRDRRTGDSRGFAFVRYKY 66 (251)
Q Consensus 41 ~i~~v~i~~~~~~g~~~g~afV~f~~ 66 (251)
+|+.|.|..-...|..++||-|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57788777666678899999999975
No 320
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=34.67 E-value=1.1e+02 Score=22.98 Aligned_cols=56 Identities=14% Similarity=0.243 Sum_probs=40.3
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEe----cHHHHHHHHhhh
Q 025517 16 YSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK----YADEAQKAVDRL 77 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~----~~~~A~~Ai~~l 77 (251)
.+|.|.|+.-..-...|...+.....|..+.+.... +.+.|+|. +.+....+|..+
T Consensus 124 ~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 183 (202)
T 2rop_A 124 TLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAE------GTATVLYNPAVISPEELRAAIEDM 183 (202)
T ss_dssp EEEEESCCCSTHHHHHHHHHGGGSSSEEEEEEETTT------TEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEccC------CEEEEEECCCCCCHHHHHHHHHHc
Confidence 467888887766677899999988888887775532 56888885 345556666654
No 321
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.46 E-value=14 Score=23.42 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=13.8
Q ss_pred CCCeeEEEEccCCCCCCcceEEEEEEecH
Q 025517 39 YGKVVDVFIPRDRRTGDSRGFAFVRYKYA 67 (251)
Q Consensus 39 ~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 67 (251)
.|+|..|.... ..|||.|++.
T Consensus 27 lGtV~kV~~~~--------~~ClV~FeD~ 47 (68)
T 2e5p_A 27 LGTIKKVDSAR--------EVCLVQFEDD 47 (68)
T ss_dssp EEEEEEEETTT--------TEEEEEETTT
T ss_pred EeEEEEEecCC--------cEEEEEEccC
Confidence 36666665322 5799999864
No 322
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=34.30 E-value=8.4 Score=27.78 Aligned_cols=27 Identities=7% Similarity=-0.076 Sum_probs=0.0
Q ss_pred eEEEEEEecHHHHHHHHhhhCCCccCC
Q 025517 58 GFAFVRYKYADEAQKAVDRLDGRVVDG 84 (251)
Q Consensus 58 g~afV~f~~~~~A~~Ai~~l~g~~i~g 84 (251)
.++|++|.+...|..||+.|+|....|
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g 31 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMG 31 (135)
T ss_dssp ---------------------------
T ss_pred ccccccccCCCchhhhhhhccCCCCCC
Confidence 467888999999999999998765443
No 323
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=33.69 E-value=42 Score=23.31 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=20.1
Q ss_pred CeeEEEEccCCCCCCcceEEEEEEec
Q 025517 41 KVVDVFIPRDRRTGDSRGFAFVRYKY 66 (251)
Q Consensus 41 ~i~~v~i~~~~~~g~~~g~afV~f~~ 66 (251)
+|+.|.|..-...|+.++||=|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 56777776665678889999999975
No 324
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=33.17 E-value=1.5e+02 Score=22.00 Aligned_cols=52 Identities=19% Similarity=0.315 Sum_probs=38.7
Q ss_pred cCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhC
Q 025517 22 NITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (251)
Q Consensus 22 nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 78 (251)
.++. ...+++.+.+..+-+|..|..+. |..--++.|.+.+.++.+..++.|.
T Consensus 94 ~~~~-~~~~~v~~~l~~~peV~~~~~vt----G~~d~l~~v~~~d~~~l~~~l~~l~ 145 (171)
T 2e1c_A 94 KVKA-GKYSEVASNLAKYPEIVEVYETT----GDYDMVVKIRTKNSEELNNFLDLIG 145 (171)
T ss_dssp EECT-TCHHHHHHHHHTSTTEEEEEECS----SSSSEEEEEEESSHHHHHHHHHHHH
T ss_pred EECc-chHHHHHHHHhcCcCeEEEEEee----CCCCEEEEEEECCHHHHHHHHHHHh
Confidence 5553 35678889999999999998864 3333677888999999888775543
No 325
>2f40_A Hypothetical protein PF1455; protein structure prediction, residual dipolar couplings, PY furious, simulated annealing, structural genomics; NMR {Pyrococcus furiosus} SCOP: i.11.1.1
Probab=33.13 E-value=7.5 Score=26.04 Aligned_cols=69 Identities=20% Similarity=0.213 Sum_probs=38.1
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEec-HHHHHHHHhhhCCCccCCceEEEE
Q 025517 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY-ADEAQKAVDRLDGRVVDGREITVQ 90 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~A~~Ai~~l~g~~i~g~~l~v~ 90 (251)
...++++||.++... .++-.+..--.|-.|.| +|.. -.|||.|+. .-.-++.++.|+...+.-..|.|+
T Consensus 10 ~~~~kfg~It~EeA~-~~QYeL~k~~avyRvFi-----NgYA-k~g~ViFDe~kl~~e~lLeelkPEVi~ek~lTv~ 79 (96)
T 2f40_A 10 KWIKFTTNLTPEEAK-IVQYELSTRDEFYRVFI-----NPYA-KVAEVVIDDSKVNIEELKEKLKGEVIEEKEITLQ 79 (96)
T ss_dssp CEEECCCSCTTTTTH-HHHHTTTTTTTBCCCCC-----CTTT-TCCEEECCBCSCSHHHHHHHTTTCSSCCCCCCCS
T ss_pred hheeecCCCCHHHHH-HHHHHhhcchhhhhhee-----cccc-ccceEEECcccCCHHHHHHHcChhhcccccccHH
Confidence 456778888875322 22222333333333322 2222 238999973 334456666788887777777664
No 326
>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus musculus} PDB: 3rgq_A*
Probab=33.13 E-value=65 Score=23.04 Aligned_cols=74 Identities=12% Similarity=0.015 Sum_probs=36.9
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCC---------cceEEEEEEe--cH------HHHHHHHhhhCC
Q 025517 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGD---------SRGFAFVRYK--YA------DEAQKAVDRLDG 79 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~---------~~g~afV~f~--~~------~~A~~Ai~~l~g 79 (251)
.|||+++|... ++..++..+|.-.-|.+........ ..|+.|+.+. +. +....+++.++.
T Consensus 8 ~l~~g~~~~~~---~~~~ll~~~gi~~Vi~l~~~~e~~~~~~~~~~~~~~gi~~~~~p~~d~~~~~~~~~~~~~~~~i~~ 84 (157)
T 3rgo_A 8 TVLLGALPLKN---MTRRLVLDENVRGVITMNEEYETRFLCNTSKEWKKAGVEQLRLSTVDMTGVPTLANLHKGVQFALK 84 (157)
T ss_dssp SEEEESCCCGG---GHHHHHHHSCEEEEEEESCCTTTTTSSCCHHHHHHTTCEEEEECCCTTTSSCCHHHHHHHHHHHHH
T ss_pred CeEEecCcCcc---chHHHHHHcCCCEEEECccccccccccCCHHHHHHCCCeEEEecCCCCCCCChHHHHHHHHHHHHH
Confidence 59999998753 4555566777333334433321110 0244444442 22 344555554443
Q ss_pred CccCCceEEEEecc
Q 025517 80 RVVDGREITVQFAK 93 (251)
Q Consensus 80 ~~i~g~~l~v~~a~ 93 (251)
..-.|.+|.|....
T Consensus 85 ~~~~~~~vlVHC~~ 98 (157)
T 3rgo_A 85 YQALGQCVYVHCKA 98 (157)
T ss_dssp HHHTTCEEEEESSS
T ss_pred HHHCCCEEEEECCC
Confidence 33345677665443
No 327
>1j3m_A The conserved hypothetical protein TT1751; X-RAY crystallography, structural genomics, riken structural genomics/proteomics initiative; 2.00A {Thermus thermophilus} SCOP: d.129.7.1
Probab=32.59 E-value=87 Score=22.04 Aligned_cols=55 Identities=7% Similarity=0.120 Sum_probs=36.8
Q ss_pred cCCCCCCHHHHHHHhhcCCC--eeEEEEccC--CC-CCCcceEEEEEEecHHHHHHHHhh
Q 025517 22 NITFRTTADDLFPLFEKYGK--VVDVFIPRD--RR-TGDSRGFAFVRYKYADEAQKAVDR 76 (251)
Q Consensus 22 nLp~~~t~~~L~~~f~~~G~--i~~v~i~~~--~~-~g~~~g~afV~f~~~~~A~~Ai~~ 76 (251)
+.+++.+.+.|+..+..-|- +..+.+... .. .-....|-.+.|.|+.-|..+|+.
T Consensus 9 ~~s~~e~~~~l~~al~~~Gf~v~~~id~~~~l~~k~g~~~~~~~il~~cnP~~a~~~l~~ 68 (129)
T 1j3m_A 9 KATLAEARAQVEAALKEEGFGILTEIDVAATLKAKLGLEKPPYLILGACNPNLAARALEA 68 (129)
T ss_dssp SSCHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEeCHHHHHHHhcCCCCCCeEEEEECCHHHHHHHHHh
Confidence 56666777889999876664 344443321 00 112346888999999999999984
No 328
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=32.29 E-value=17 Score=23.51 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=14.7
Q ss_pred CHHHHHHHhhcCCCeeEE
Q 025517 28 TADDLFPLFEKYGKVVDV 45 (251)
Q Consensus 28 t~~~L~~~f~~~G~i~~v 45 (251)
|.-||++++.+||.|..+
T Consensus 4 tlYDVqQLLK~fG~~IY~ 21 (72)
T 2nn4_A 4 TFYDVQQLLKTFGHIVYF 21 (72)
T ss_dssp SHHHHHHHHHTTTCCCCC
T ss_pred cHHHHHHHHHHCCEEEEe
Confidence 567899999999977654
No 329
>2kgl_A Mesoderm development candidate 2; MESD, LRP5/6, chaperone, YWTD, WNT; NMR {Mus musculus} PDB: 2kmi_A 2rqk_A 2rqm_A
Probab=32.25 E-value=1.4e+02 Score=23.13 Aligned_cols=54 Identities=17% Similarity=0.097 Sum_probs=33.4
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcC-------CCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhh
Q 025517 16 YSLLVLNITFRTTADDLFPLFEKY-------GKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~-------G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 77 (251)
.-+||. |....+++++..++..+ +....+.++.+ +-+++.|.+-..|..|...|
T Consensus 76 lMmFV~-v~g~~Se~Ete~it~lWQtsL~NnhI~~qry~Id~-------dr~iFm~~DGs~a~E~KdFL 136 (195)
T 2kgl_A 76 LMMFVT-VSGNPTEKETEEITSLWQGSLFNANYDVQRFIVGS-------DRAIFMLRDGSYAWEIKDFL 136 (195)
T ss_dssp CEEEEE-SSSCSCHHHHHHHHHHHHHHGGGSCCEEEEEEETT-------EEEEEEESCSHHHHHHHHHH
T ss_pred eEEEEE-eCCCCCHHHHHHHHHHHHHHHHhCCeeEEEEEecC-------CeEEEEeCchHHHHHHHHHH
Confidence 345665 44557777665555322 22344444443 56899999998888887754
No 330
>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A
Probab=32.03 E-value=1.2e+02 Score=20.66 Aligned_cols=55 Identities=7% Similarity=0.091 Sum_probs=31.5
Q ss_pred EEEecCCCCCCHHHHHHHhhc-------CCCeeEEEEccCCCC-CCcce--E-EEEEEecHHHHHH
Q 025517 18 LLVLNITFRTTADDLFPLFEK-------YGKVVDVFIPRDRRT-GDSRG--F-AFVRYKYADEAQK 72 (251)
Q Consensus 18 l~V~nLp~~~t~~~L~~~f~~-------~G~i~~v~i~~~~~~-g~~~g--~-afV~f~~~~~A~~ 72 (251)
|.+-.|...++.+++.+++.. .-.|..+.+-.+... +...| + .+++|++.++.+.
T Consensus 14 iVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~d~~l~~~F~s~e~l~~ 79 (112)
T 1q4r_A 14 VLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAE 79 (112)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHTHHHHCTTCCEEEEEECCCSSSCSTTCCEEEEEEESCHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHhhhCCceEEEEEccCCCccccCCCccEEEEEEECCHHHHHH
Confidence 444578888888776655533 334666655554322 21122 3 4668888877654
No 331
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=31.56 E-value=94 Score=25.59 Aligned_cols=36 Identities=14% Similarity=-0.113 Sum_probs=24.5
Q ss_pred eEEEEEEecHHHHHHHHhhhCCCccCCceEEEEecc
Q 025517 58 GFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (251)
Q Consensus 58 g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 93 (251)
..+|..|.+.+.|+++.+.|...-+.+..+.+....
T Consensus 259 ptvfal~~~~~~a~~~~~~l~~~g~~~~v~~~~~~~ 294 (306)
T 3pyf_A 259 PTCAFLCTSASSAIDVGAQLSGAGVCRTVRVATGPV 294 (306)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHTTSSSEEEEEEECC
T ss_pred hhheEEeCCHHHHHHHHHHHHhcCCcceEEEeecCC
Confidence 457888888888888888776544555555555443
No 332
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A*
Probab=31.53 E-value=88 Score=28.05 Aligned_cols=48 Identities=19% Similarity=0.204 Sum_probs=32.4
Q ss_pred HHHHHHHhh----cCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhh
Q 025517 29 ADDLFPLFE----KYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77 (251)
Q Consensus 29 ~~~L~~~f~----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 77 (251)
..||..+|. .+|.|+.+.|...+. .....++.+.|.+.++|..|+..|
T Consensus 211 ~~dL~~~~~Gs~GtlGiIt~~tl~l~p~-p~~~~~~~~~f~~~~~~~~~~~~l 262 (524)
T 2exr_A 211 NSELFFSVLGGLGQFGIITRARVLLQPA-PDMVRWIRVVYTEFDEFTQDAEWL 262 (524)
T ss_dssp SHHHHHHHTTCTTSSEEEEEEEEEEEEC-CSEEEEEEEEESCHHHHHHHHHHH
T ss_pred ChhHHhHhhcCCCccEEEEEEEEEEEEc-CCeeEEEEEEeCCHHHHHHHHHHH
Confidence 357777773 467788877665442 233456778999998888877654
No 333
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=31.40 E-value=38 Score=23.25 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=34.3
Q ss_pred EEecCCCCCCHHHHHHHhh-cCC--------CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhh
Q 025517 19 LVLNITFRTTADDLFPLFE-KYG--------KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77 (251)
Q Consensus 19 ~V~nLp~~~t~~~L~~~f~-~~G--------~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 77 (251)
++--+|..++.++|.+... +|+ .+..+.+.-+ .| -||.+.+.++.+-|++.+
T Consensus 25 ~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDE--dG-----D~Vtl~sddDl~~A~e~~ 85 (98)
T 1q1o_A 25 FTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDE--DG-----DFVVLGSDEDWNVAKEML 85 (98)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECS--SS-----CEEEECSHHHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcC--CC-----CEEEEcCHHHHHHHHHHH
Confidence 3334678888888775542 333 2244554332 33 799999999999999976
No 334
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=31.35 E-value=1.2e+02 Score=20.30 Aligned_cols=54 Identities=9% Similarity=-0.004 Sum_probs=31.2
Q ss_pred EEEecCCCCCCHHHHHHHhhc-------CCCeeEEEEccCCCCCCcc--eEE-EEEEecHHHHHH
Q 025517 18 LLVLNITFRTTADDLFPLFEK-------YGKVVDVFIPRDRRTGDSR--GFA-FVRYKYADEAQK 72 (251)
Q Consensus 18 l~V~nLp~~~t~~~L~~~f~~-------~G~i~~v~i~~~~~~g~~~--g~a-fV~f~~~~~A~~ 72 (251)
|.+-.|...++++++.++... ...|..+.+-.+.. +... .++ +++|++.++.+.
T Consensus 8 iVlfk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~-~~~~~~~~~~~~~F~s~e~l~~ 71 (103)
T 2qyc_A 8 VVMMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVA-ARSQGYTHATSSAFVDAAAHDA 71 (103)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCC-TTCTTCCEEEEEEESSHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCC-CCCCCccEEEEEEECCHHHHHH
Confidence 334477888887765555432 45577776665532 2222 334 567888776654
No 335
>1rlh_A Conserved hypothetical protein; structural genomics, T. acidophilum, PSI, protein structure initiative; 1.80A {Thermoplasma acidophilum} SCOP: d.256.1.1
Probab=30.89 E-value=1.3e+02 Score=22.59 Aligned_cols=30 Identities=20% Similarity=0.152 Sum_probs=24.4
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCC
Q 025517 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYG 40 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G 40 (251)
+..++..|.||.-.+--|-+||.+.+-.-.
T Consensus 22 e~Pe~~NvIlGqsHFIKTVEDl~Ealv~sv 51 (173)
T 1rlh_A 22 VIPAEANIIVGYSHFIKTVEDLNEIIRTHV 51 (173)
T ss_dssp CCCTTCEEEEEEESSCCCTHHHHHHTGGGS
T ss_pred cCCCCceEEEeeccccccHHHHHHHHhhcC
Confidence 455678899999999889999999886543
No 336
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.87 E-value=37 Score=24.13 Aligned_cols=29 Identities=7% Similarity=-0.002 Sum_probs=23.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCe
Q 025517 13 RDTYSLLVLNITFRTTADDLFPLFEKYGKV 42 (251)
Q Consensus 13 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i 42 (251)
-.+.+|+|.++. ..+.++|..++..+|-.
T Consensus 23 f~g~~i~itG~~-~~~r~~l~~~i~~~Gg~ 51 (129)
T 2d8m_A 23 LQGVVVVLSGFQ-NPFRSELRDKALELGAK 51 (129)
T ss_dssp STTEEEEEESCC-TTHHHHHHHHHHHTTEE
T ss_pred CCCeEEEEeCCC-cHHHHHHHHHHHHcCCE
Confidence 457889999987 56788999999999854
No 337
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=30.83 E-value=1.3e+02 Score=20.63 Aligned_cols=19 Identities=16% Similarity=0.286 Sum_probs=17.0
Q ss_pred EEEEEecHHHHHHHHhhhC
Q 025517 60 AFVRYKYADEAQKAVDRLD 78 (251)
Q Consensus 60 afV~f~~~~~A~~Ai~~l~ 78 (251)
-.|.|.+.++...|+..+.
T Consensus 73 DlItiSsDeEL~~Al~~~~ 91 (102)
T 2kkc_A 73 DLVAFSSDEELTMAMSYVK 91 (102)
T ss_dssp CEEEECSHHHHHHHHHHCC
T ss_pred CEEEecCHHHHHHHHHhcC
Confidence 5899999999999999765
No 338
>2ekm_A Hypothetical protein ST1511; NPPSFA, national project on protein ST and functional analyses, riken structural genomics/proteomi initiative; 2.06A {Sulfolobus tokodaii}
Probab=30.64 E-value=1.7e+02 Score=21.78 Aligned_cols=31 Identities=16% Similarity=0.327 Sum_probs=24.9
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCC
Q 025517 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGK 41 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~ 41 (251)
+..++..|.||.-++--|-+||.+.+-.-.+
T Consensus 11 e~Pe~~NvI~GqsHFIKTvEDl~Ealv~svP 41 (162)
T 2ekm_A 11 EIPEGTNVIIGQSHFIKTVEDLYETLASSSP 41 (162)
T ss_dssp CCCTTEEEEEEECCSTTHHHHHHHHHHTTCS
T ss_pred cCCCCceEEEeeccccccHHHHHHHHhhcCC
Confidence 3456788999999998899999999865543
No 339
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=30.27 E-value=1.5e+02 Score=21.17 Aligned_cols=53 Identities=19% Similarity=0.312 Sum_probs=39.4
Q ss_pred cCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCC
Q 025517 22 NITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG 79 (251)
Q Consensus 22 nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 79 (251)
.++. ...+++.+.+..+-+|..|..+. |..--++.|.+.+.++....++.+..
T Consensus 74 ~~~~-~~~~~~~~~l~~~p~V~~~~~~t----G~~d~~~~v~~~d~~~l~~~~~~l~~ 126 (151)
T 2cyy_A 74 KVKA-GKYSEVASNLAKYPEIVEVYETT----GDYDMVVKIRTKNSEELNNFLDLIGS 126 (151)
T ss_dssp EECT-TCHHHHHHHHHTCTTEEEEEECS----SSSSEEEEEEESSHHHHHHHHHHHHT
T ss_pred EECc-ccHHHHHHHHhcCCCeeEeeEec----CCCCEEEEEEECCHHHHHHHHHHHhC
Confidence 5553 35678899999999999998864 33336678889999998888765543
No 340
>1wvq_A Hypothetical protein PAE2307; phosphorylated histidine, structural genomics, unknown funct; HET: NEP; 1.45A {Pyrobaculum aerophilum} PDB: 2gl0_A* 2jb7_A*
Probab=30.25 E-value=1.7e+02 Score=21.82 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=24.6
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCC
Q 025517 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYG 40 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G 40 (251)
+..++..|.||.-++--|-+||.+.+-.-.
T Consensus 14 e~Pe~~NvI~GqsHFIKTVEDl~Ealv~sv 43 (167)
T 1wvq_A 14 PIPQGTNVIIGQAHFIKTVEDLYEALVTSV 43 (167)
T ss_dssp CCCTTCEEEEEECCSTTHHHHHHHHHHTTC
T ss_pred cCCCCceEEEeeccccccHHHHHHHHhhcC
Confidence 445678899999999889999999886544
No 341
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=30.23 E-value=18 Score=23.60 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=13.3
Q ss_pred CCeeEEEEccCCCCCCcceEEEEEEecH
Q 025517 40 GKVVDVFIPRDRRTGDSRGFAFVRYKYA 67 (251)
Q Consensus 40 G~i~~v~i~~~~~~g~~~g~afV~f~~~ 67 (251)
|.|+.|.... +.|||.|++.
T Consensus 45 GTI~kV~~~~--------e~ClV~F~D~ 64 (79)
T 2m0o_A 45 GTIKKVDSAR--------EVCLVQFEDD 64 (79)
T ss_dssp EEEEEEETTT--------TEEEEEETTS
T ss_pred EEEEEeccCC--------CEEEEEEcCC
Confidence 5666664432 5699999864
No 342
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=30.11 E-value=1.4e+02 Score=20.88 Aligned_cols=48 Identities=13% Similarity=0.296 Sum_probs=36.1
Q ss_pred CHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHH-hhhCC
Q 025517 28 TADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAV-DRLDG 79 (251)
Q Consensus 28 t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai-~~l~g 79 (251)
..+++.+.+..+.+|..|... +|..--++.|.+.+.++.+..+ +.+..
T Consensus 76 ~~~~~~~~l~~~~~v~~~~~~----~G~~d~~~~v~~~d~~~l~~~~~~~l~~ 124 (141)
T 1i1g_A 76 KLFEVAEKLKEYDFVKELYLS----SGDHMIMAVIWAKDGEDLAEIISNKIGK 124 (141)
T ss_dssp GHHHHHHHHHHSTTEEEECCC----SSSSSEEEEEEESSHHHHHHHHHHTTTT
T ss_pred hHHHHHHHHhcCCCeEEEEEe----cCCCCEEEEEEECCHHHHHHHHHHHhhc
Confidence 557788888999999998765 3444467788899999999888 55543
No 343
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=28.30 E-value=36 Score=22.33 Aligned_cols=51 Identities=22% Similarity=0.242 Sum_probs=31.0
Q ss_pred CCCHHHHHHHhhcCCCe-eEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEE
Q 025517 26 RTTADDLFPLFEKYGKV-VDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (251)
Q Consensus 26 ~~t~~~L~~~f~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v 89 (251)
.-|+++|+.+++.|-.- .+| -.+|...+.++..+|.+..+..+|+-+.-+|
T Consensus 32 vktedelkkyleefrkesqni-------------kvlilvsndeeldkakelaqkmeidvrtrkv 83 (110)
T 2kpo_A 32 VKTEDELKKYLEEFRKESQNI-------------KVLILVSNDEELDKAKELAQKMEIDVRTRKV 83 (110)
T ss_dssp CCSHHHHHHHHHHHTSSTTSE-------------EEEEEESSHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eccHHHHHHHHHHHHhhccCe-------------EEEEEEcChHHHHHHHHHHHhhceeeeeeec
Confidence 34788999988877521 111 1455666777777777755555555444333
No 344
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=28.19 E-value=37 Score=22.29 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=15.2
Q ss_pred EecCCCCC-CHHHHHHHhhc
Q 025517 20 VLNITFRT-TADDLFPLFEK 38 (251)
Q Consensus 20 V~nLp~~~-t~~~L~~~f~~ 38 (251)
|=|||+++ ||.+|.++|.+
T Consensus 29 IPnLPpgVnTW~qI~el~qk 48 (81)
T 2ko4_A 29 IPNIPPNINTWQQVTALAQQ 48 (81)
T ss_dssp SSSCCTTTCBHHHHHHHHTT
T ss_pred CCCCCCCcchHHHHHHHHHc
Confidence 45888765 89999999875
No 345
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A*
Probab=28.04 E-value=1e+02 Score=25.32 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=29.0
Q ss_pred HHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhh
Q 025517 32 LFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77 (251)
Q Consensus 32 L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 77 (251)
|++.|+.+|.-.-..+ .|..-|+-||-|-..+.|+.+|+.|
T Consensus 47 ~~~~~~~~~~~~~~~~-----~ga~gg~~~~~~~~~~~a~~~~~~l 87 (291)
T 1o57_A 47 IKQTFEQQGIGTLLTV-----PGAAGGVKYIPKMKQAEAEEFVQTL 87 (291)
T ss_dssp HHHHHHHTTSEEEEEE-----CSTTCEEEEEECCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCceEEEe-----cCCCCceEEcccCCHHHHHHHHHHH
Confidence 5678888875433333 4555588899999999998887754
No 346
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=27.94 E-value=1.8e+02 Score=23.70 Aligned_cols=48 Identities=13% Similarity=0.307 Sum_probs=37.9
Q ss_pred CcEEEEecCCC-CCCHHHHHHHhhcC-------CCeeEEEEccCCCCCCcceEEEE
Q 025517 15 TYSLLVLNITF-RTTADDLFPLFEKY-------GKVVDVFIPRDRRTGDSRGFAFV 62 (251)
Q Consensus 15 ~~~l~V~nLp~-~~t~~~L~~~f~~~-------G~i~~v~i~~~~~~g~~~g~afV 62 (251)
+.+|-|..+.. .+++++|...+.+| .++-.+.+....+.|...-|.|+
T Consensus 166 TTIl~v~~~~~~~~deE~l~~~l~k~~~P~glN~~~f~l~ltnrRKSGRsl~y~f~ 221 (270)
T 4a8j_B 166 TTIVDIDVVLTGTLDTEEVSELLNEFRIPRGLNNDIFQLRLVNKRKSGRSLEYDFI 221 (270)
T ss_dssp SEEEEEEECCCSSCCHHHHHHHHHTTCCCSSCSCSEEEEEEEEECTTSCEEEEEEE
T ss_pred hheEEEecCCCCCccHHHHHHHhhheecccccCCCeEEEEEEeccccCcceEEEEE
Confidence 36777888876 67899999999887 35677777777788888888887
No 347
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Probab=27.82 E-value=68 Score=18.19 Aligned_cols=54 Identities=11% Similarity=0.066 Sum_probs=32.5
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEe-cHHHHHHHHhh
Q 025517 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK-YADEAQKAVDR 76 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~-~~~~A~~Ai~~ 76 (251)
+|.|.|+.-..-...|...+.....|..+.+.... +.+.|++. +.+....+|..
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~i~~~i~~ 58 (64)
T 2xmm_A 4 QLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTS------KKVTITSALGEEQLRTAIAS 58 (64)
T ss_dssp EEECTTCCSHHHHHHHHHHHHHHCTTCEEEECTTT------CEEEEECSSCHHHHHHHHHH
T ss_pred EEEECCcCcHHHHHHHHHHHhcCCCcEEEEEEecC------CEEEEEecCCHHHHHHHHHH
Confidence 46666766555556788888777667677664432 44566543 34555566654
No 348
>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica}
Probab=27.74 E-value=71 Score=23.39 Aligned_cols=16 Identities=6% Similarity=0.005 Sum_probs=12.2
Q ss_pred EEEecCCCCCCHHHHH
Q 025517 18 LLVLNITFRTTADDLF 33 (251)
Q Consensus 18 l~V~nLp~~~t~~~L~ 33 (251)
||||+++...+.+.|+
T Consensus 17 LylG~~~~a~~~~~L~ 32 (161)
T 3emu_A 17 IHLGSFLNAHNVDYIH 32 (161)
T ss_dssp EEEEETTGGGCHHHHH
T ss_pred EEECChHHhhCHHHHH
Confidence 9999999766655554
No 349
>3fle_A SE_1780 protein; structural genomics, APC61035.1, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.01A {Staphylococcus epidermidis}
Probab=26.84 E-value=2.3e+02 Score=22.28 Aligned_cols=34 Identities=9% Similarity=0.007 Sum_probs=23.9
Q ss_pred CcEEEEecCCCC-CCHHHHHHHhhcCC---CeeEEEEc
Q 025517 15 TYSLLVLNITFR-TTADDLFPLFEKYG---KVVDVFIP 48 (251)
Q Consensus 15 ~~~l~V~nLp~~-~t~~~L~~~f~~~G---~i~~v~i~ 48 (251)
..+|||-++... ..+..|.+.|.+.| .|..+.+.
T Consensus 7 ~pvvliHG~~~~~~~~~~l~~~L~~~g~~~~vi~~dv~ 44 (249)
T 3fle_A 7 TATLFLHGYGGSERSETFMVKQALNKNVTNEVITARVS 44 (249)
T ss_dssp EEEEEECCTTCCGGGTHHHHHHHHTTTSCSCEEEEEEC
T ss_pred CcEEEECCCCCChhHHHHHHHHHHHcCCCceEEEEEEC
Confidence 457999998753 46678888898877 35555554
No 350
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=26.74 E-value=30 Score=23.62 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=15.2
Q ss_pred EecCCCCCCHHHHHHHhh-cCCC
Q 025517 20 VLNITFRTTADDLFPLFE-KYGK 41 (251)
Q Consensus 20 V~nLp~~~t~~~L~~~f~-~~G~ 41 (251)
|.+|...+|-+||-.+|. ..|+
T Consensus 21 VsGvT~~TTC~DVV~aL~~~~G~ 43 (95)
T 2cs4_A 21 VCGVTEVTTCQEVVIALAQAIGR 43 (95)
T ss_dssp CSSBCSSSCHHHHHHHHHHHHSC
T ss_pred EECCCCCCcHHHHHHHHHhccCC
Confidence 346888899888887654 4453
No 351
>3hhl_A RPA0582; alpha-beta-barrel, structural genomics, PSI-2, protein struc initiative, reductive methylation; HET: MLY MLZ PGE 2PE PE8 1PE PG4; 2.65A {Rhodopseudomonas palustris} PDB: 3hhl_B* 3hhl_C* 3dca_A
Probab=26.63 E-value=88 Score=22.83 Aligned_cols=19 Identities=5% Similarity=0.041 Sum_probs=15.9
Q ss_pred ceEEEEEEecHHHHHHHHh
Q 025517 57 RGFAFVRYKYADEAQKAVD 75 (251)
Q Consensus 57 ~g~afV~f~~~~~A~~Ai~ 75 (251)
...++|+|.+.+.|.+++.
T Consensus 88 ~~~viieFPS~~aa~a~y~ 106 (143)
T 3hhl_A 88 DHVFIAEYPSVAAFVEMIR 106 (143)
T ss_dssp SEEEEEEESCHHHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHc
Confidence 4689999999999988754
No 352
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=26.30 E-value=1.7e+02 Score=20.41 Aligned_cols=56 Identities=9% Similarity=0.100 Sum_probs=32.0
Q ss_pred EEEecCCCCCCHHHHHHHhh-------cCCCeeEEEEccCCCC-CCc--ceEE-EEEEecHHHHHHH
Q 025517 18 LLVLNITFRTTADDLFPLFE-------KYGKVVDVFIPRDRRT-GDS--RGFA-FVRYKYADEAQKA 73 (251)
Q Consensus 18 l~V~nLp~~~t~~~L~~~f~-------~~G~i~~v~i~~~~~~-g~~--~g~a-fV~f~~~~~A~~A 73 (251)
|.+-.|...++++++.+++. +...|..+.+-.+... +.. -.++ +++|++.++.+..
T Consensus 24 IVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~Y 90 (121)
T 3bb5_A 24 LVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDAY 90 (121)
T ss_dssp EEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHHH
Confidence 44457888888776555543 3445667666554321 222 2344 5578887766543
No 353
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=25.98 E-value=27 Score=22.12 Aligned_cols=10 Identities=10% Similarity=0.301 Sum_probs=8.2
Q ss_pred eEEEEEEecH
Q 025517 58 GFAFVRYKYA 67 (251)
Q Consensus 58 g~afV~f~~~ 67 (251)
|.|+|.|++.
T Consensus 42 gtC~V~F~D~ 51 (66)
T 2eqj_A 42 QSCFIIFEDS 51 (66)
T ss_dssp TEEEEEETTT
T ss_pred cEEEEEEccC
Confidence 7899999863
No 354
>1vgg_A Conserved hypothetical protein TT1634; thermus thermophilus HB8, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.75A {Thermus thermophilus} SCOP: d.256.1.1
Probab=25.92 E-value=1.7e+02 Score=21.64 Aligned_cols=28 Identities=14% Similarity=0.269 Sum_probs=23.2
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhc
Q 025517 11 DIRDTYSLLVLNITFRTTADDLFPLFEK 38 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~ 38 (251)
+..++..|.||.-++--|-+||.+.+-.
T Consensus 9 e~Pe~~NvI~GqsHFIKTVEDl~Ealv~ 36 (161)
T 1vgg_A 9 EKPENLNVILGQAHFIKTVEDLHEALVT 36 (161)
T ss_dssp CCCTTCEEEEEECCSTTHHHHHHHHHHH
T ss_pred cCCCCceEEEeeccccccHHHHHHHHhh
Confidence 3456788999999998899999988854
No 355
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=25.50 E-value=23 Score=32.20 Aligned_cols=43 Identities=19% Similarity=0.127 Sum_probs=28.2
Q ss_pred HHHHhh--cCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHh
Q 025517 32 LFPLFE--KYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (251)
Q Consensus 32 L~~~f~--~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~ 75 (251)
|..+|. .+|.|+.+.|...+. ......+++.|.+.++|..|+.
T Consensus 250 l~~L~~~GtlGiIt~~tl~l~p~-p~~~~~~~~~f~~~~~a~~~~~ 294 (560)
T 1e8g_A 250 IDGLFSQSNMGIVTKIGIWLMPN-PGGYQSYLITLPKDGDLKQAVD 294 (560)
T ss_dssp CGGGGSSSSSEEEEEEEEECEEC-CSCEEEEEEEECSTTHHHHHHH
T ss_pred hhcccccCcEEEEEEEEEEEEeC-CCceEEEEEEcCCHHHHHHHHH
Confidence 334443 478888888766542 2334678889998888766543
No 356
>2jsh_A Appetite-regulating hormone, obestatin; micellar solution, DPC, SDS, alternative splicing, amidation, lipoprotein, secreted; NMR {Synthetic} PDB: 2jsj_A
Probab=25.41 E-value=27 Score=17.71 Aligned_cols=22 Identities=14% Similarity=0.200 Sum_probs=14.8
Q ss_pred cCCCCCCHHHHHHHhhcCCCee
Q 025517 22 NITFRTTADDLFPLFEKYGKVV 43 (251)
Q Consensus 22 nLp~~~t~~~L~~~f~~~G~i~ 43 (251)
|.|+++.-.--.+.|.+||.+.
T Consensus 2 naPFeiGi~ls~~~y~~yG~~L 23 (26)
T 2jsh_A 2 NAPFDVGIKLSGAQYQQHGRAL 23 (26)
T ss_dssp CSCSSTTGGGHHHHCSCSSSCC
T ss_pred CCceeEeeEecHHHHHHHhHHh
Confidence 4566665555566788998764
No 357
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase, oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB: 1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A* 2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Probab=25.30 E-value=51 Score=28.52 Aligned_cols=48 Identities=19% Similarity=0.194 Sum_probs=32.8
Q ss_pred EEecCCCC---CCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHh
Q 025517 19 LVLNITFR---TTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (251)
Q Consensus 19 ~V~nLp~~---~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~ 75 (251)
+||||..- .....+.++..+||.|..+.+. +.-+|.+.+.+.++.++.
T Consensus 20 ~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~~---------~~~~v~v~~~~~i~~il~ 70 (476)
T 2fdv_A 20 FIGNYLQLNTEQMYNSLMKISERYGPVFTIHLG---------PRRVVVLCGHDAVREALV 70 (476)
T ss_dssp TTBTGGGCCTTBHHHHHHHHHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHT
T ss_pred ccccHhhcCCcchHHHHHHHHHHhCCEEEEEEC---------CccEEEECCHHHHHHHHh
Confidence 46776532 1245677777899999887663 224667788888888874
No 358
>4ar0_A Type IV pilus biogenesis and competence protein P; transport, secretin type II secretion system; NMR {Neisseria meningitidis}
Probab=25.24 E-value=37 Score=24.37 Aligned_cols=59 Identities=14% Similarity=0.084 Sum_probs=31.9
Q ss_pred HHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEe--cHHHHHHHHhhhCCCc--cCCceEEEEec
Q 025517 31 DLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYK--YADEAQKAVDRLDGRV--VDGREITVQFA 92 (251)
Q Consensus 31 ~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~--~~~~A~~Ai~~l~g~~--i~g~~l~v~~a 92 (251)
+|.++|..++.+..+.|+.++.- .|-.-|.+. ..++|..+|-.++|.. ..|..|.|..+
T Consensus 42 ~i~~vl~~la~~tg~NiV~d~~V---~G~VTl~l~~v~~~~al~~iL~~~gl~~~~~gnvi~I~p~ 104 (128)
T 4ar0_A 42 EIRTILQILAKESGMNIVASDSV---NGKMTLSLKDVPWDQALDLVMQARNLDMRQQGNIVNIAPR 104 (128)
T ss_dssp EHHHHHHHHHHTTCCEEEECTTC---CCEEEEEEEEEEHHHHHHHHHHHHTEEEEEETTEEEEEEH
T ss_pred CHHHHHHHHHHHHCCcEEEcCCC---CceeeEeecCCCHHHHHHHHHHHcCceEEEECCEEEEECh
Confidence 34444444443333334443322 133334443 5677777777778874 47888888654
No 359
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=25.08 E-value=1.2e+02 Score=20.21 Aligned_cols=59 Identities=17% Similarity=0.177 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHHhh-cCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhCCCccCCceEEEEe
Q 025517 24 TFRTTADDLFPLFE-KYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (251)
Q Consensus 24 p~~~t~~~L~~~f~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 91 (251)
+..++|++|..++. .|| +..+.|..-...+ --|...+..+.+.|+... .-.|..|.+..
T Consensus 25 ~~~~tweel~~mvk~~f~-L~~~~ikY~DEen-----D~v~i~Sq~E~eEAlkva---~k~~n~L~m~v 84 (87)
T 2bkf_A 25 PENTTWADIEAMVKVSFD-LNTIQIKYLDEEN-----EEVSINSQGEYEEALKMA---VKQGNQLQMQV 84 (87)
T ss_dssp GGGCCHHHHHHHHHHHHT-CSSEEEEEECTTS-----CEEEECSHHHHHHHHHHH---HHTTTEEEEEE
T ss_pred CCCCCHHHHHHHHHHHcC-CCceEEEEEcCCC-----CEEEEecHHHHHHHHHHh---ccCCCEEEEEE
Confidence 34789999999985 455 2222222211122 356667777788887731 12355566554
No 360
>3kiz_A Phosphoribosylformylglycinamidine cyclo-ligase; STR genomics, joint center for structural genomics, JCSG; 1.50A {Cytophaga hutchinsonii atcc 33406}
Probab=24.56 E-value=15 Score=32.08 Aligned_cols=45 Identities=16% Similarity=0.077 Sum_probs=33.0
Q ss_pred HHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhC
Q 025517 30 DDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (251)
Q Consensus 30 ~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 78 (251)
..|.+++++.|.|....|.... +.|.+||.+-.+++|+++++.|+
T Consensus 316 ppiF~~l~~~G~v~~~EM~rtF----NmGiGmVlvV~~e~a~~vl~~L~ 360 (394)
T 3kiz_A 316 PPLFQLIQGQSNTPWEEMYKVF----NMGHRLEIYTDAAHAEGMIAIAK 360 (394)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHS----CTTEEEEEEECHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCHHHHHHhc----CCcccEEEEECHHHHHHHHHHHH
Confidence 5677788888877654443221 23789999999999999988875
No 361
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=24.41 E-value=76 Score=21.58 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=16.6
Q ss_pred CCHHHHHHHhhcCCCeeEEEEc
Q 025517 27 TTADDLFPLFEKYGKVVDVFIP 48 (251)
Q Consensus 27 ~t~~~L~~~f~~~G~i~~v~i~ 48 (251)
.+++.|.++|..+|+|+.-.+.
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~MF 25 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSMF 25 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEET
T ss_pred hHHHHHHHHHhccCCceEeecc
Confidence 4567788999999998765543
No 362
>3rfw_A Cell-binding factor 2; SURA-like, chaperone; 2.20A {Campylobacter jejuni}
Probab=24.32 E-value=1.1e+02 Score=24.03 Aligned_cols=42 Identities=12% Similarity=0.214 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHhhcCCC----eeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhhhC
Q 025517 25 FRTTADDLFPLFEKYGK----VVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (251)
Q Consensus 25 ~~~t~~~L~~~f~~~G~----i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 78 (251)
..+|+++|+.+|...-. ...+ .+..|.|.+.+.|+.++..|.
T Consensus 89 ~~vtd~ei~~~Y~~~~~~f~~~~~~------------~~~~I~~~~~~~A~~~~~~l~ 134 (252)
T 3rfw_A 89 IKIDAAKVKAFYDQNKDKYVKPARV------------QAKHILVATEKEAKDIINELK 134 (252)
T ss_dssp CCCCHHHHHHHHHHHGGGSEECCEE------------EEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhHHhccccceE------------EEEEEEeCCHHHHHHHHHHHH
Confidence 46899999999976421 1222 347888889999999888887
No 363
>2yh5_A DAPX protein, BAMC; lipid binding protein, lipoprotein, BAM complex; 1.25A {Escherichia coli} PDB: 3sns_A
Probab=24.09 E-value=1.5e+02 Score=21.13 Aligned_cols=48 Identities=31% Similarity=0.335 Sum_probs=36.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEecHHH
Q 025517 14 DTYSLLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADE 69 (251)
Q Consensus 14 ~~~~l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~ 69 (251)
.+..++|-..|++..|.-|-.++...| +|+...- ..|.-||.|...+.
T Consensus 12 ~g~p~l~l~~~fdraW~rvg~ALdr~Gf~V~Drdr--------s~G~y~V~Y~~~~~ 60 (127)
T 2yh5_A 12 TGLPMLVVRGPFNVVWQRLPAALEKVGMKVTDSTR--------SQGNMAVTYKPLSD 60 (127)
T ss_dssp TSCEEEEEESCHHHHHHHHHHHHHHTTEEEEEEEG--------GGTEEEEEECCCCH
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEeeec--------cCeEEEEEeCCCCc
Confidence 345677788999999999999999999 4444432 34889999986653
No 364
>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A
Probab=23.02 E-value=1.3e+02 Score=18.00 Aligned_cols=54 Identities=15% Similarity=0.162 Sum_probs=36.1
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEe-cHHHHHHHHhh
Q 025517 16 YSLLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYK-YADEAQKAVDR 76 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~-~~~~A~~Ai~~ 76 (251)
.+|.|. +.-..-...|...+.... .|..+.+.... +.+.|.|. +.+....+|+.
T Consensus 7 ~~~~v~-m~C~~C~~~ie~~l~~~~~GV~~~~v~~~~------~~~~v~~~~~~~~i~~~i~~ 62 (73)
T 1cc8_A 7 YQFNVV-MTCSGCSGAVNKVLTKLEPDVSKIDISLEK------QLVDVYTTLPYDFILEKIKK 62 (73)
T ss_dssp EEEEEC-CCSHHHHHHHHHHHHTTTTSEEEEEEETTT------TEEEEEESSCHHHHHHHHHT
T ss_pred EEEEEe-eECHHHHHHHHHHHHhCCCCceEEEEECCC------CEEEEEEeCCHHHHHHHHHH
Confidence 356666 665555678999999887 78887775542 45677764 45566667664
No 365
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=22.87 E-value=1e+02 Score=26.40 Aligned_cols=39 Identities=13% Similarity=0.088 Sum_probs=30.0
Q ss_pred HHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhh
Q 025517 29 ADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76 (251)
Q Consensus 29 ~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 76 (251)
...|.++..+||.|..+.+. +.-+|.+.+.+.++.++..
T Consensus 35 ~~~~~~l~~kYG~i~~~~~g---------~~~~vvv~dp~~~~~il~~ 73 (487)
T 3n9y_A 35 HLHHVQNFQKYGPIYREKLG---------NVESVYVIDPEDVALLFKS 73 (487)
T ss_dssp HHHHHHHHHHHCSEEEEEET---------TEEEEEECCHHHHHHHHHT
T ss_pred hHHHHHHHHHcCceeeccCC---------CCCEEEEcCHHHHHHHHHh
Confidence 35677788999999988763 2357888999999988763
No 366
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=22.74 E-value=1.7e+02 Score=23.28 Aligned_cols=60 Identities=7% Similarity=0.002 Sum_probs=36.8
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCC-CeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHhh
Q 025517 17 SLLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 76 (251)
+=||+|.....--..|-..|...| .|..|.-..........+.-+|.+.+.+++..++..
T Consensus 20 VR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~~~~~~~~~~~~~v~s~~em~~~v~~ 80 (232)
T 2gk4_A 20 VRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKPEPHPNLSIREITNTKDLLIEMQE 80 (232)
T ss_dssp SEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSCCCCCCTTEEEEECCSHHHHHHHHHH
T ss_pred eeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCccccccCCCCeEEEEHhHHHHHHHHHHH
Confidence 458889888866666777777777 344333221111101236778899988887777654
No 367
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=22.70 E-value=1.7e+02 Score=19.29 Aligned_cols=34 Identities=12% Similarity=0.280 Sum_probs=16.7
Q ss_pred EEEEecCCC-CCCHHHHHHHhhcCCCeeEEEEccC
Q 025517 17 SLLVLNITF-RTTADDLFPLFEKYGKVVDVFIPRD 50 (251)
Q Consensus 17 ~l~V~nLp~-~~t~~~L~~~f~~~G~i~~v~i~~~ 50 (251)
.|.|.+.+. .++.+++..++...|....+.|..+
T Consensus 63 I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~ 97 (105)
T 1wha_A 63 VLSINGVDVTEARHDHAVSLLTAASPTIALLLERE 97 (105)
T ss_dssp EEEESSCBCTTCCHHHHHHHHTSCCSCEEEEEEEC
T ss_pred EEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence 344444443 2345556666655555444544443
No 368
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.59 E-value=13 Score=23.22 Aligned_cols=10 Identities=10% Similarity=0.172 Sum_probs=8.0
Q ss_pred eEEEEEEecH
Q 025517 58 GFAFVRYKYA 67 (251)
Q Consensus 58 g~afV~f~~~ 67 (251)
..|||.|++.
T Consensus 36 ~~ClV~FeD~ 45 (63)
T 2e5q_A 36 QSCLVTFEDN 45 (63)
T ss_dssp SEEEEEETTS
T ss_pred CEEEEEEccC
Confidence 6799999864
No 369
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=22.50 E-value=54 Score=21.82 Aligned_cols=29 Identities=7% Similarity=0.327 Sum_probs=24.1
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcC
Q 025517 11 DIRDTYSLLVLNITFRTTADDLFPLFEKY 39 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~ 39 (251)
......+|.|.+.+..++.++..+|+..|
T Consensus 15 ~lNtPvvi~v~~~~q~v~~~eae~~L~~F 43 (87)
T 2rf4_B 15 TLNTPVVIHATQLPQHVSTDEVLQFLESF 43 (87)
T ss_dssp -CCCCCEEEESSCCEECCHHHHHHHHHHH
T ss_pred ccCCCeEEEeecCCccCCHHHHHHHHHHH
Confidence 44566789999999999999999998887
No 370
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=22.38 E-value=1.1e+02 Score=26.25 Aligned_cols=48 Identities=21% Similarity=0.203 Sum_probs=32.6
Q ss_pred EEecCCCC--CCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHh
Q 025517 19 LVLNITFR--TTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (251)
Q Consensus 19 ~V~nLp~~--~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~ 75 (251)
+||||..- -....|.++..+||+|..+.+. |.-+|...+.+.++.++.
T Consensus 22 ~iG~~~~~~~~~~~~~~~~~~kYG~i~~~~~~---------~~~~vvv~~~~~i~~il~ 71 (461)
T 3ld6_A 22 FLGHAIAFGKSPIEFLENAYEKYGPVFSFTMV---------GKTFTYLLGSDAAALLFN 71 (461)
T ss_dssp TTBTHHHHHHCHHHHHHHHHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHH
T ss_pred eeeeHHHhhhCHHHHHHHHHHHhCCEEEEEEC---------CccEEEEeCHHHHHHHHh
Confidence 45665421 1245577888999999888774 335677788888888765
No 371
>1tr0_A Stable protein 1; plant protein; 1.80A {Populus tremula} SCOP: d.58.4.4 PDB: 1si9_A
Probab=22.29 E-value=1.8e+02 Score=19.48 Aligned_cols=55 Identities=13% Similarity=0.055 Sum_probs=31.3
Q ss_pred EEEecCCCCCCHHHHHHHhhc-------CCCeeEEEEccCCCC---CCcce--EE-EEEEecHHHHHH
Q 025517 18 LLVLNITFRTTADDLFPLFEK-------YGKVVDVFIPRDRRT---GDSRG--FA-FVRYKYADEAQK 72 (251)
Q Consensus 18 l~V~nLp~~~t~~~L~~~f~~-------~G~i~~v~i~~~~~~---g~~~g--~a-fV~f~~~~~A~~ 72 (251)
|.+-.|...++++++..+... ...|..+.+-.+... +...| ++ +++|++.++.+.
T Consensus 12 iVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~d~~l~~~F~s~e~l~~ 79 (108)
T 1tr0_A 12 TLLTRFKDEITREQIDNYINDYTNLLDLIPSMKSFNWGTDLGMESAELNRGYTHAFESTFESKSGLQE 79 (108)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHCTTCCEEEEEECCSCSCTTTTTTCCEEEEEEESSHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCCccccccCCCccEEEEEEECCHHHHHH
Confidence 444578888888776555433 445666665554321 22222 34 567888776654
No 372
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=22.10 E-value=85 Score=20.20 Aligned_cols=30 Identities=13% Similarity=0.027 Sum_probs=23.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCe
Q 025517 12 IRDTYSLLVLNITFRTTADDLFPLFEKYGKV 42 (251)
Q Consensus 12 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i 42 (251)
.=.+.+|+|.++.. ...++|+.++..+|-.
T Consensus 7 ~f~g~~~~i~g~~~-~~~~~l~~~i~~~GG~ 36 (92)
T 4id3_A 7 IFKNCVIYINGYTK-PGRLQLHEMIVLHGGK 36 (92)
T ss_dssp TTTTCEEEECSCCS-SCHHHHHHHHHHTTCE
T ss_pred ccCCEEEEEeCCCC-cCHHHHHHHHHHCCCE
Confidence 44578999998653 3678899999999854
No 373
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=22.05 E-value=87 Score=21.24 Aligned_cols=52 Identities=15% Similarity=0.090 Sum_probs=26.7
Q ss_pred CCCCCHHHHHHHhhcC--------CCeeEEEEccCC-----CCCCcc-eEEEEEEecHHHHHHHHh
Q 025517 24 TFRTTADDLFPLFEKY--------GKVVDVFIPRDR-----RTGDSR-GFAFVRYKYADEAQKAVD 75 (251)
Q Consensus 24 p~~~t~~~L~~~f~~~--------G~i~~v~i~~~~-----~~g~~~-g~afV~f~~~~~A~~Ai~ 75 (251)
.+.++++++..++..| |.|..+..+-.. ...... .|.++.|.....+.+-|+
T Consensus 11 ~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I~k~~~G~Y~l~~f~a~~~~i~ele 76 (101)
T 1cqm_A 11 NPNLDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLA 76 (101)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEECHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeChHHHHHHH
Confidence 5566777766555444 456655433110 112223 467888876555544443
No 374
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=21.91 E-value=1.1e+02 Score=19.53 Aligned_cols=35 Identities=9% Similarity=-0.016 Sum_probs=22.8
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCC-CeeEEEEccC
Q 025517 16 YSLLVLNITFRTTADDLFPLFEKYG-KVVDVFIPRD 50 (251)
Q Consensus 16 ~~l~V~nLp~~~t~~~L~~~f~~~G-~i~~v~i~~~ 50 (251)
.+|.|......---.+|..+|..+| .|..+.....
T Consensus 6 ~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~ 41 (91)
T 1zpv_A 6 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVL 41 (91)
T ss_dssp EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEE
Confidence 4566666655445577888887776 7877766543
No 375
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=21.58 E-value=52 Score=22.34 Aligned_cols=31 Identities=10% Similarity=-0.033 Sum_probs=24.6
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCe
Q 025517 11 DIRDTYSLLVLNITFRTTADDLFPLFEKYGKV 42 (251)
Q Consensus 11 ~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~i 42 (251)
..-.+.+|+|.++.. ....+|++++..+|-.
T Consensus 14 ~~l~g~~i~isg~~~-~~r~~l~~li~~~Gg~ 44 (107)
T 3l3e_A 14 KPLHKVVVCVSKKLS-KKQSELNGIAASLGAD 44 (107)
T ss_dssp CTTTTCEEEECGGGG-GGHHHHHHHHHHTTCE
T ss_pred CCCCCeEEEEeCCCh-HhHHHHHHHHHHcCCE
Confidence 345578999988765 6789999999999854
No 376
>1rxd_A Protein tyrosine phosphatase type IVA, member 1; protein tyrosine phosphatase IVA1...; structural genomics, NYSGXRC, unknown function, PSI; 1.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1xm2_A 1zck_A 1r6h_A 1v3a_A
Probab=21.47 E-value=1.4e+02 Score=21.18 Aligned_cols=78 Identities=13% Similarity=0.189 Sum_probs=42.3
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCeeEEEEccCCCCCC----cceEEEEEEe-------cHHHHHHHHhhhCCCc--
Q 025517 15 TYSLLVLNITFRTTADDLFPLFEKYGKVVDVFIPRDRRTGD----SRGFAFVRYK-------YADEAQKAVDRLDGRV-- 81 (251)
Q Consensus 15 ~~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i~~~~~~g~----~~g~afV~f~-------~~~~A~~Ai~~l~g~~-- 81 (251)
...++++.-|...|.++..+++.++| |..|.......... ..++.|+.+. +.+....+++.++...
T Consensus 15 ~~~~i~s~~p~~~t~~df~~~l~~~g-i~~Iv~l~~~~~~~~~~~~~~~~~~~~p~~d~~~~~~~~~~~~~~~i~~~~~~ 93 (159)
T 1rxd_A 15 NMRFLITHNPTNATLNKFIEELKKYG-VTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVDDWLSLVKIKFRE 93 (159)
T ss_dssp TEEEEECCCCCGGGHHHHHHHHHHTT-EEEEEECSCCCSCCHHHHHTTCEEEECCC--CCCCCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEeCCCccccHHHHHHHHHHcC-CCEEEEcCCCccCHHHHHHcCCEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHh
Confidence 45688888898889998777888887 44443333221111 2356666664 2333444444433221
Q ss_pred cCCceEEEEecc
Q 025517 82 VDGREITVQFAK 93 (251)
Q Consensus 82 i~g~~l~v~~a~ 93 (251)
-.+.+|.|.-..
T Consensus 94 ~~~~~vlVHC~a 105 (159)
T 1rxd_A 94 EPGCCIAVHCVA 105 (159)
T ss_dssp STTCEEEEECSS
T ss_pred CCCCeEEEECCC
Confidence 124566665443
No 377
>3bde_A MLL5499 protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; 1.79A {Mesorhizobium loti}
Probab=21.47 E-value=2.1e+02 Score=19.88 Aligned_cols=55 Identities=7% Similarity=0.024 Sum_probs=30.2
Q ss_pred EEEecCCCCCCHHHHHHHh-------hcCCCeeEEEEccCCCCCCcceEE-EEEEecHHHHHH
Q 025517 18 LLVLNITFRTTADDLFPLF-------EKYGKVVDVFIPRDRRTGDSRGFA-FVRYKYADEAQK 72 (251)
Q Consensus 18 l~V~nLp~~~t~~~L~~~f-------~~~G~i~~v~i~~~~~~g~~~g~a-fV~f~~~~~A~~ 72 (251)
|.+-.|...++++++.+++ .+...|..+.+-.+......-.+| +++|++.++.+.
T Consensus 24 IVlfklK~~~~~e~~~~~~~~l~~L~~~Ip~I~~~~vG~~~~~~~~~d~~l~~~F~s~edl~~ 86 (120)
T 3bde_A 24 TVVFTLKHASHSLEEKRFLVDAKKILSAIRGVTHFEQLRQISPKIDYHFGFSMEFADQAAYTR 86 (120)
T ss_dssp EEEEEESSCTTCHHHHHHHHHHHHHHHTSTTCEEEEEEECCCSSSCCCEEEEEEESSHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhhccCCceEEEEEccCCCCCCCccEEEEEEECCHHHHHH
Confidence 3344677777766655444 334557777666553221113445 557777766544
No 378
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.39 E-value=89 Score=20.29 Aligned_cols=10 Identities=10% Similarity=0.009 Sum_probs=4.4
Q ss_pred cHHHHHHHHh
Q 025517 66 YADEAQKAVD 75 (251)
Q Consensus 66 ~~~~A~~Ai~ 75 (251)
+.+++..+|.
T Consensus 65 ~~~~~~~~l~ 74 (91)
T 2e7k_A 65 DPRALQELLR 74 (91)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 3344444444
No 379
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=21.37 E-value=1.1e+02 Score=21.58 Aligned_cols=25 Identities=12% Similarity=0.098 Sum_probs=14.9
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCC
Q 025517 17 SLLVLNITFRTTADDLFPLFEKYGK 41 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~~G~ 41 (251)
+|.|.+|+..+.+..|.++|..+|-
T Consensus 51 VlDl~~l~~~~dl~~L~~~l~~~gl 75 (120)
T 3ghf_A 51 VINVSGLESPVNWPELHKIVTSTGL 75 (120)
T ss_dssp EEEEEECCSSCCHHHHHHHHHTTTC
T ss_pred EEEccccCChHHHHHHHHHHHHcCC
Confidence 4555566545566666666666663
No 380
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=21.28 E-value=1.4e+02 Score=22.26 Aligned_cols=37 Identities=24% Similarity=0.287 Sum_probs=26.6
Q ss_pred CCCHHHHHHHhhcCCCe---eEEEEccCCCCCCcceEEEE
Q 025517 26 RTTADDLFPLFEKYGKV---VDVFIPRDRRTGDSRGFAFV 62 (251)
Q Consensus 26 ~~t~~~L~~~f~~~G~i---~~v~i~~~~~~g~~~g~afV 62 (251)
.+++++|.++-.+.|.+ ..+.+..+..+|..+.|||-
T Consensus 2 ~~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~ 41 (157)
T 3mfb_A 2 LLTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYH 41 (157)
T ss_dssp CCCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEE
T ss_pred ccCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEE
Confidence 36899999999999976 34555555347877777764
No 381
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=21.16 E-value=1.7e+02 Score=24.26 Aligned_cols=28 Identities=18% Similarity=0.282 Sum_probs=21.1
Q ss_pred CCcEEEEecCCCC----------CCHHHHHHHhhcCCC
Q 025517 14 DTYSLLVLNITFR----------TTADDLFPLFEKYGK 41 (251)
Q Consensus 14 ~~~~l~V~nLp~~----------~t~~~L~~~f~~~G~ 41 (251)
.+..|.|+|..+. .+.+.|..+|..+|-
T Consensus 61 rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF 98 (316)
T 2fp3_A 61 RGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNF 98 (316)
T ss_dssp SEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTE
T ss_pred CcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCC
Confidence 4567888888655 445779999999984
No 382
>2qlw_A RHAU; mutarotase, isomerase; HET: MSE; 1.60A {Rhizobium leguminosarum BV} PDB: 2qlx_A*
Probab=21.13 E-value=30 Score=25.57 Aligned_cols=48 Identities=21% Similarity=0.227 Sum_probs=29.8
Q ss_pred cEEEEecCCCCCCH----------HHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEec
Q 025517 16 YSLLVLNITFRTTA----------DDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKY 66 (251)
Q Consensus 16 ~~l~V~nLp~~~t~----------~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 66 (251)
...|+-.|.++.-+ .+|.+.+...| |.+..|..++.+ ..-|+++++.+
T Consensus 43 R~af~m~Lkp~~~eEYk~~Ha~VWPEv~~~Lk~aG-I~nYSIfl~~~~--~~LF~~~E~~d 100 (144)
T 2qlw_A 43 KHAFKMQLNPGMEAEYRKRHDEIWPELVDLLHQSG-ASDYSIHLDRET--NTLFGVLTRPK 100 (144)
T ss_dssp EEEEEEEBCTTCHHHHHHHHHTCCHHHHHHHHHHT-CEEEEEEEETTT--TEEEEEEEEET
T ss_pred EEEEEEEcCchHHHHHHHHHHhCCHHHHHHHHHcC-CeEEEEEEECCC--CeEEEEEEEcC
Confidence 34566666665433 46778888888 455555554322 33688898887
No 383
>3lp5_A Putative cell surface hydrolase; structural genom PSI2, MCSG, protein structure initiative, midwest center FO structural genomics; 2.00A {Lactobacillus plantarum}
Probab=21.07 E-value=1.9e+02 Score=22.87 Aligned_cols=34 Identities=15% Similarity=0.151 Sum_probs=22.1
Q ss_pred CcEEEEecCCCC-CCHHHHHHHhhcCC----CeeEEEEc
Q 025517 15 TYSLLVLNITFR-TTADDLFPLFEKYG----KVVDVFIP 48 (251)
Q Consensus 15 ~~~l~V~nLp~~-~t~~~L~~~f~~~G----~i~~v~i~ 48 (251)
..+|||.++... ..++.|...|.+.| .|..+.+.
T Consensus 5 ~pvv~iHG~~~~~~~~~~~~~~L~~~~~~~~~vi~~~v~ 43 (250)
T 3lp5_A 5 APVIMVPGSSASQNRFDSLITELGKETPKKHSVLKLTVQ 43 (250)
T ss_dssp CCEEEECCCGGGHHHHHHHHHHHHHHSSSCCCEEEEEEC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEEEEe
Confidence 357999998854 35677777886644 35555544
No 384
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=20.80 E-value=2e+02 Score=19.24 Aligned_cols=23 Identities=26% Similarity=0.063 Sum_probs=18.1
Q ss_pred eEEEEEEecHHHHHHHHhhhCCC
Q 025517 58 GFAFVRYKYADEAQKAVDRLDGR 80 (251)
Q Consensus 58 g~afV~f~~~~~A~~Ai~~l~g~ 80 (251)
|..+|.=.+.+.+++|++.++..
T Consensus 56 G~V~I~g~~~ea~~~A~~~I~~i 78 (91)
T 2cpq_A 56 GTFRIYGESADAVKKARGFLEFV 78 (91)
T ss_dssp TEEEEEESSHHHHHHHHHHHSCC
T ss_pred CEEEEEECCHHHHHHHHHHHHhh
Confidence 56677556999999999988765
No 385
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=20.63 E-value=56 Score=15.86 Aligned_cols=12 Identities=33% Similarity=0.683 Sum_probs=9.8
Q ss_pred HHHHHHHhhcCC
Q 025517 29 ADDLFPLFEKYG 40 (251)
Q Consensus 29 ~~~L~~~f~~~G 40 (251)
..+++.+|.++|
T Consensus 14 ikqvkklfkkwg 25 (26)
T 1ytr_A 14 IKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHHcC
Confidence 467889999887
No 386
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.51 E-value=1.4e+02 Score=19.01 Aligned_cols=12 Identities=8% Similarity=0.124 Sum_probs=4.7
Q ss_pred HHHHHHHhhcCC
Q 025517 29 ADDLFPLFEKYG 40 (251)
Q Consensus 29 ~~~L~~~f~~~G 40 (251)
.+++..++...+
T Consensus 68 ~~~~~~~~~~~~ 79 (93)
T 2dkr_A 68 HEKAVELLKAAQ 79 (93)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHhCC
Confidence 344444443333
No 387
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP LM2, cytochro monooxygenase; HET: HEM; 1.60A {Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A* 2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A* 3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Probab=20.37 E-value=73 Score=27.50 Aligned_cols=48 Identities=23% Similarity=0.254 Sum_probs=33.6
Q ss_pred EEecCCCC---CCHHHHHHHhhcCCCeeEEEEccCCCCCCcceEEEEEEecHHHHHHHHh
Q 025517 19 LVLNITFR---TTADDLFPLFEKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVD 75 (251)
Q Consensus 19 ~V~nLp~~---~t~~~L~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~ 75 (251)
+||||..- .....+.++..+||.|..+.+. +.-+|.+.+.+.++.++.
T Consensus 20 ~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g---------~~~~v~v~~~~~i~~il~ 70 (476)
T 1po5_A 20 VLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLG---------SRPVVVLCGTDAIREALV 70 (476)
T ss_dssp TTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHT
T ss_pred ccccHHhccCCcHHHHHHHHHHHhCCEEEEEEC---------CccEEEECCHHHHHHHHH
Confidence 46776532 2246677888899999887653 224677889999998874
No 388
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=20.17 E-value=2.3e+02 Score=19.89 Aligned_cols=19 Identities=16% Similarity=0.286 Sum_probs=17.0
Q ss_pred EEEEEecHHHHHHHHhhhC
Q 025517 60 AFVRYKYADEAQKAVDRLD 78 (251)
Q Consensus 60 afV~f~~~~~A~~Ai~~l~ 78 (251)
-.|.|.+.++...|+..++
T Consensus 88 DlItISsDeEL~~Al~~~~ 106 (117)
T 2ktr_A 88 DLVAFSSDEELTMAMSYVK 106 (117)
T ss_dssp CEEEECSHHHHHHHHHHCC
T ss_pred CEEEecCHHHHHHHHHhcC
Confidence 5899999999999999765
No 389
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=20.13 E-value=1.7e+02 Score=18.89 Aligned_cols=31 Identities=6% Similarity=-0.097 Sum_probs=14.1
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCeeEEEE
Q 025517 17 SLLVLNITFRTTADDLFPLFEKYGKVVDVFI 47 (251)
Q Consensus 17 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~i 47 (251)
.++|.+.-..+-...|.++|.+...|..+..
T Consensus 36 v~IIHGkG~GvLr~~V~~~L~~~~~V~~f~~ 66 (83)
T 2zqe_A 36 LRLLHGKGTGALRQAIREALRRDKRVESFAD 66 (83)
T ss_dssp EEEECCSTTSHHHHHHHHHHHHCTTEEEEEE
T ss_pred EEEEECCCchHHHHHHHHHHhcCCceeEEEE
Confidence 3444444444444445555555544444433
Done!