BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025518
(251 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I1D|A Chain A, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
pdb|1I1D|B Chain B, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
pdb|1I1D|C Chain C, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
pdb|1I1D|D Chain D, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
Length = 161
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 110 DDESSKRLMV--PLLGNLAQRVVPVTPSNGQLVGFGRAVSDVGLTASIHDIMVIPSLRQM 167
+D K++M P++ + + + G ++ + + ++GL I DI V +
Sbjct: 54 NDNEDKKIMQYNPMV--IVDKRTETVAATGNIIIERKIIHELGLCGHIEDIAVNSKYQGQ 111
Query: 168 GIGRMIVQRILRMLTSREIYDIAALCSEEERLFFEACGFGN 208
G+G++++ +++ + Y I C E+ F+E CGF N
Sbjct: 112 GLGKLLIDQLVTIGFDYGCYKIILDCDEKNVKFYEKCGFSN 152
>pdb|1I12|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
pdb|1I12|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
pdb|1I12|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
pdb|1I12|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
Length = 160
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 110 DDESSKRLMV--PLLGNLAQRVVPVTPSNGQLVGFGRAVSDVGLTASIHDIMVIPSLRQM 167
+D K++M P++ + + + G ++ + + ++GL I DI V +
Sbjct: 53 NDNEDKKIMQYNPMV--IVDKRTETVAATGNIIIERKIIHELGLCGHIEDIAVNSKYQGQ 110
Query: 168 GIGRMIVQRILRMLTSREIYDIAALCSEEERLFFEACGFGN 208
G+G++++ +++ + Y I C E+ F+E CGF N
Sbjct: 111 GLGKLLIDQLVTIGFDYGCYKIILDCDEKNVKFYEKCGFSN 151
>pdb|1I21|A Chain A, Crystal Structure Of Yeast Gna1
pdb|1I21|B Chain B, Crystal Structure Of Yeast Gna1
pdb|1I21|M Chain M, Crystal Structure Of Yeast Gna1
pdb|1I21|N Chain N, Crystal Structure Of Yeast Gna1
pdb|1I21|X Chain X, Crystal Structure Of Yeast Gna1
pdb|1I21|Y Chain Y, Crystal Structure Of Yeast Gna1
Length = 159
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 40/84 (47%)
Query: 125 LAQRVVPVTPSNGQLVGFGRAVSDVGLTASIHDIMVIPSLRQMGIGRMIVQRILRMLTSR 184
+ + + G ++ + + ++GL I DI V + G+G++++ +++ +
Sbjct: 67 IVDKRTETVAATGNIIIERKIIHELGLCGHIEDIAVNSKYQGQGLGKLLIDQLVTIGFDY 126
Query: 185 EIYDIAALCSEEERLFFEACGFGN 208
Y I C E+ F+E CGF N
Sbjct: 127 GCYKIILDCDEKNVKFYEKCGFSN 150
>pdb|3S6F|A Chain A, Crystal Structure Of A Hypotetical Acetyltransferase
(Dr_1678) From Deinococcus Radiodurans At 1.19 A
Resolution
Length = 145
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 121 LLGNLAQRVVPVTPSNGQLVGFGRAVSDVGLTASIHDIMVIPSLRQMGIGRMIVQRILRM 180
+L A V+ TP +GQ++GF A+SD L ASI + V R +G+G + +R+L
Sbjct: 43 ILDRAAVFVLARTP-DGQVIGFVNALSDGILAASIPLLEVQAGWRSLGLGSELXRRVLTE 101
Query: 181 LTSREIYDIAALCSEEERLFFEACGF 206
L ++Y + C ++ F+E G
Sbjct: 102 LG--DLYXVDLSCDDDVVPFYERLGL 125
>pdb|3T90|A Chain A, Crystal Structure Of Glucosamine-6-Phosphate
N-Acetyltransferase From Arabidopsis Thaliana
Length = 149
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 148 DVGLTASIHDIMVIPSLRQMGIGRMIVQRILRMLTSREIYDIAALCSEEERLFFEACGFG 207
+ G I D++V R +G+ +V+ ++ S Y + CS E ++F+E CG
Sbjct: 79 NCGKAGHIEDVVVDSRFRGKQLGKKVVEFLMDHCKSMGCYKVILDCSVENKVFYEKCGMS 138
Query: 208 N 208
N
Sbjct: 139 N 139
>pdb|1WK4|A Chain A, Crystal Structure Of Ttk003001606
pdb|1WK4|B Chain B, Crystal Structure Of Ttk003001606
pdb|1WK4|C Chain C, Crystal Structure Of Ttk003001606
pdb|2CY2|A Chain A, Crystal Structure Of Ttha1209 In Complex With Acetyl
Coenzyme A
Length = 174
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 111 DESSKRLMVPLLGNLAQRVVPVTPSNGQLVGFG-----RAVSDVGLTASIHDIMVIPSLR 165
+ ++RL P R+ +G++VGF RA G TA + I V+P+ +
Sbjct: 45 ERWAQRLKTP---TWPGRLFVAESESGEVVGFAAFGPDRASGFPGYTAELWAIYVLPTWQ 101
Query: 166 QMGIGRMIVQRILRMLTS 183
+ G+GR + R+L +
Sbjct: 102 RKGLGRALFHEGARLLQA 119
>pdb|3FB3|A Chain A, Crystal Structure Of Trypanosoma Brucei Acetyltransferase,
Tb11.01.2886
pdb|3FB3|B Chain B, Crystal Structure Of Trypanosoma Brucei Acetyltransferase,
Tb11.01.2886
pdb|3I3G|A Chain A, Crystal Structure Of Trypanosoma Brucei
N-Acetyltransferase (Tb11.01.2886) At 1.86a
pdb|3I3G|B Chain B, Crystal Structure Of Trypanosoma Brucei
N-Acetyltransferase (Tb11.01.2886) At 1.86a
Length = 161
Score = 34.3 bits (77), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 143 GRAVSDVGLTASIHDIMVIPSLRQMGIGRMIVQRILRMLTSREIYDIAALCSEEERLFFE 202
GRAV I D++V PS R G+G+ ++ + + S+ Y + SE+ F+E
Sbjct: 93 GRAV------GHIEDVVVDPSYRGAGLGKALIMDLCEISRSKGCYKVILDSSEKSLPFYE 146
Query: 203 ACGF 206
GF
Sbjct: 147 KLGF 150
>pdb|2ATR|A Chain A, Acetyltransferase, Gnat Family Protein Sp0256 From
Streptococcus Pneumoniae Tigr4
Length = 138
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 129 VVPVTPSNGQLVGFGRAVSDVGLTASIHDIMVIPSLRQMGIGRMIVQRILRMLTSREIYD 188
V+ + +VG R V D + + D++V+PS ++ GIG + + L +E Y
Sbjct: 43 VIYLALDGDAVVGLIRLVGDGFSSVFVQDLIVLPSYQRQGIGSSLXKEALGNF--KEAYQ 100
Query: 189 IAALCSEEERL--FFEACGF 206
+ E E+ F+ + GF
Sbjct: 101 VQLATEETEKNVGFYRSXGF 120
>pdb|3GY9|A Chain A, Crystal Structure Of Putative Acetyltransferase
(Yp_001815201.1) From Exiguobacterium Sp. 255-15 At 1.52
A Resolution
pdb|3GYA|A Chain A, Crystal Structure Of Putative Acetyltransferase
(Yp_001815201.1) From Exiguobacterium Sp. 255-15 At 1.62
A Resolution
Length = 150
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 152 TASIHDIMVIPSLRQMGIGRMIVQRILR--MLTSREIYDIAALCSEEERLFFEACGF 206
T I + V+P R GIG ++++I LT YD L SE+ F++ GF
Sbjct: 76 TGRIRHVYVLPEARSHGIGTALLEKIXSEAFLT----YDRLVLYSEQADPFYQGLGF 128
>pdb|1Y7R|A Chain A, 1.7 A Crystal Structure Of Protein Of Unknown Function
Sa2161 From Meticillin-Resistant Staphylococcus Aureus,
Probable Acetyltransferase
pdb|1Y7R|B Chain B, 1.7 A Crystal Structure Of Protein Of Unknown Function
Sa2161 From Meticillin-Resistant Staphylococcus Aureus,
Probable Acetyltransferase
Length = 133
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 138 QLVGFGRAVSDVGLTASIHDIMVIPSLRQMGIGRMIVQRILRMLTSREI 186
+L+G GR + D G I DI V+ S + G +I + I + + + +
Sbjct: 49 RLIGXGRVIGDGGTVFQIVDIAVLKSYQGQAYGSLIXEHIXKYIKNVSV 97
>pdb|2VXK|A Chain A, Structural Comparison Between Aspergillus Fumigatus And
Human Gna1
pdb|2VEZ|A Chain A, Afgna1 Crystal Structure Complexed With Acetyl-Coa And
Glucose-6p Gives New Insights Into Catalysis
Length = 190
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 132 VTPSNGQLVGFG------RAVSDVGLTASIHDIMVIPSLRQMGIGRMIVQRILRMLTSRE 185
V G++VG G + + +G+ I DI V + +G I+Q + +
Sbjct: 99 VCDGEGRIVGTGSLVVERKFIHSLGMVGHIEDIAVEKGQQGKKLGLRIIQALDYVAEKVG 158
Query: 186 IYDIAALCSEEERLFFEACGF 206
Y CSE F+ CGF
Sbjct: 159 CYKTILDCSEANEGFYIKCGF 179
>pdb|1K1D|A Chain A, Crystal Structure Of D-Hydantoinase
pdb|1K1D|B Chain B, Crystal Structure Of D-Hydantoinase
pdb|1K1D|C Chain C, Crystal Structure Of D-Hydantoinase
pdb|1K1D|D Chain D, Crystal Structure Of D-Hydantoinase
pdb|1K1D|E Chain E, Crystal Structure Of D-Hydantoinase
pdb|1K1D|F Chain F, Crystal Structure Of D-Hydantoinase
pdb|1K1D|G Chain G, Crystal Structure Of D-Hydantoinase
pdb|1K1D|H Chain H, Crystal Structure Of D-Hydantoinase
Length = 460
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 8/124 (6%)
Query: 129 VVPVTPSNGQLVGF--GRAVSDVGLTASIHDIMVIPSLRQMGIGRMIVQRILRMLTSREI 186
+V V NG ++ + +A++D H + P L GR L L ++
Sbjct: 179 LVMVHAENGDVIDYLTKKALADGNTDPIYHALTRPPELEGEATGRACQ---LTELAGSQL 235
Query: 187 YDIAALCSEEERLFFEACGFGNDILGSTTMMYAKTASTGFGGSQMVKRAGRKLLLVPPLR 246
Y + C++ EA G D+ G T Y + + G K + PPLR
Sbjct: 236 YVVHVTCAQAVEKIAEARNKGLDVWGETCPQYLVLDQSYL---EKPNFEGAKYVWSPPLR 292
Query: 247 GPLH 250
H
Sbjct: 293 EKWH 296
>pdb|2OZH|A Chain A, Crystal Structure Of A Putative Acetyltransferase
Belonging To The Gnat Family (Xcc2953) From Xanthomonas
Campestris Pv. Campestris At 1.40 A Resolution
Length = 142
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 136 NGQLVGFGRAVSDVGLTASIHDIMVIPSLRQMGIGRMIVQRI 177
+G+ V F R +SD A + D+ V+P R G + + +
Sbjct: 53 DGRQVAFARVISDYATFAYLGDVFVLPEHRGRGYSKALXDAV 94
>pdb|3C72|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor
Length = 334
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 15 SAYMELRWVRGRGKGKCELNFKPSMI 40
SA+ RW+ G G G+CEL+ + S +
Sbjct: 231 SAWFYHRWLLGAGSGRCELSVEKSTV 256
>pdb|3PZ1|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3
pdb|3PZ2|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3 And Lipid Substrate Ggpp
pdb|3PZ3|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms-Analogue 14
Length = 332
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 15 SAYMELRWVRGRGKGKCELNFKPSMI 40
SA+ RW+ G G G+CEL+ + S +
Sbjct: 229 SAWFYHRWLLGAGSGRCELSVEKSTV 254
>pdb|3DSS|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)
pdb|3DST|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Geranylgeranyl Pyrophosphate
pdb|3DSU|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Farnesyl Pyrophosphate
pdb|3DSV|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys-Ser-Cys(Gg)
Derivated From Rab7
pdb|3DSW|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys(Gg)-Ser-Cys
Derivated From Rab7
pdb|3DSX|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Di-Prenylated Peptide
Ser-Cys(Gg)-Ser-Cys(Gg) Derivated From Rab7
pdb|3HXB|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 6)
pdb|3HXC|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 8)
pdb|3HXD|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 9)
pdb|3HXE|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 37)
pdb|3HXF|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 32)
Length = 331
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 15 SAYMELRWVRGRGKGKCELNFKPSMI 40
SA+ RW+ G G G+CEL+ + S +
Sbjct: 228 SAWFYHRWLLGAGSGRCELSVEKSTV 253
>pdb|4EHM|A Chain A, Rabggtase In Complex With Covalently Bound Psoromic Acid
pdb|4GTS|A Chain A, Engineered Rabggtase In Complex With Bms Analogue 16
pdb|4GTT|A Chain A, Engineered Rabggtase In Complex With Bms Analogue 12
pdb|4GTV|A Chain A, Engineered Rabggtase In Complex With Bms Analogue 13
Length = 330
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 15 SAYMELRWVRGRGKGKCELNFKPSMI 40
SA+ RW+ G G G+CEL+ + S +
Sbjct: 227 SAWFYHRWLLGAGSGRCELSVEKSTV 252
>pdb|1N71|A Chain A, Crystal Structure Of Aminoglycoside 6'-Acetyltransferase
Type Ii In Complex With Coenzyme A
pdb|1N71|B Chain B, Crystal Structure Of Aminoglycoside 6'-Acetyltransferase
Type Ii In Complex With Coenzyme A
pdb|1N71|C Chain C, Crystal Structure Of Aminoglycoside 6'-Acetyltransferase
Type Ii In Complex With Coenzyme A
pdb|1N71|D Chain D, Crystal Structure Of Aminoglycoside 6'-Acetyltransferase
Type Ii In Complex With Coenzyme A
Length = 180
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 127 QRVVPVTPSNGQLVGFGRAVSDVGLTA-SIHDIMVIPSLRQMGIGRMIVQRILRMLTSR 184
+R+ +LVGF A+ G+T +H ++V S R+ IG +V + + + SR
Sbjct: 44 ERIAVAAVDQDELVGFIGAIPQYGITGWELHPLVVESSRRKNQIGTRLVNYLEKEVASR 102
>pdb|1B87|A Chain A, Crystal Structure Of An Aminoglycoside
6'-N-Acetyltransferase
Length = 181
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 127 QRVVPVTPSNGQLVGFGRAVSDVGLTA-SIHDIMVIPSLRQMGIGRMIVQRILRMLTSR 184
+R+ +LVGF A+ G+T +H ++V S R+ IG +V + + + SR
Sbjct: 44 ERIAVAAVDQDELVGFIGAIPQYGITGWELHPLVVESSRRKNQIGTRLVNYLEKEVASR 102
>pdb|2A4N|A Chain A, Crystal Structure Of Aminoglycoside 6'-N-Acetyltransferase
Complexed With Coenzyme A
pdb|2A4N|B Chain B, Crystal Structure Of Aminoglycoside 6'-N-Acetyltransferase
Complexed With Coenzyme A
Length = 182
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 127 QRVVPVTPSNGQLVGFGRAVSDVGLTA-SIHDIMVIPSLRQMGIGRMIVQRILRMLTSR 184
+R+ +LVGF A+ G+T +H ++V S R+ IG +V + + + SR
Sbjct: 44 ERIAVAAVDQDELVGFIGAIPQYGITGWELHPLVVESSRRKNQIGTRLVNYLEKEVASR 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,325,601
Number of Sequences: 62578
Number of extensions: 223228
Number of successful extensions: 418
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 404
Number of HSP's gapped (non-prelim): 20
length of query: 251
length of database: 14,973,337
effective HSP length: 96
effective length of query: 155
effective length of database: 8,965,849
effective search space: 1389706595
effective search space used: 1389706595
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)