Query 025519
Match_columns 251
No_of_seqs 144 out of 1364
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 06:40:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025519.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025519hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00063 histone deacetylase; 100.0 8.3E-61 1.8E-65 449.2 20.6 216 32-251 3-233 (436)
2 COG0123 AcuC Deacetylases, inc 100.0 1.1E-60 2.4E-65 438.7 19.2 211 33-251 2-222 (340)
3 PTZ00346 histone deacetylase; 100.0 6E-60 1.3E-64 441.3 20.8 215 32-250 19-250 (429)
4 PF00850 Hist_deacetyl: Histon 100.0 2.9E-58 6.3E-63 419.6 11.2 201 40-250 1-222 (311)
5 KOG1342 Histone deacetylase co 100.0 1.1E-52 2.4E-57 380.4 16.2 219 29-251 3-235 (425)
6 KOG1344 Predicted histone deac 100.0 6.5E-42 1.4E-46 293.8 6.4 229 21-250 2-230 (324)
7 KOG1343 Histone deacetylase co 100.0 5.5E-32 1.2E-36 268.9 9.4 188 52-249 463-668 (797)
8 KOG1343 Histone deacetylase co 99.9 5.9E-26 1.3E-30 225.9 4.6 214 32-246 28-262 (797)
9 KOG0121 Nuclear cap-binding pr 80.3 1.3 2.8E-05 35.8 2.2 46 163-208 72-122 (153)
10 PRK13236 nitrogenase reductase 71.9 4.1 9E-05 36.8 3.4 32 178-211 23-54 (296)
11 PF12023 DUF3511: Domain of un 71.8 1.1 2.3E-05 29.6 -0.3 26 9-34 2-27 (47)
12 TIGR01969 minD_arch cell divis 71.0 5.2 0.00011 34.4 3.7 20 184-204 24-43 (251)
13 TIGR01287 nifH nitrogenase iro 60.1 12 0.00026 33.0 3.9 17 185-202 24-40 (275)
14 PRK10818 cell division inhibit 59.6 12 0.00025 32.9 3.8 20 186-206 28-47 (270)
15 PHA02518 ParA-like protein; Pr 59.0 15 0.00032 30.6 4.1 22 185-208 25-46 (211)
16 CHL00175 minD septum-site dete 57.6 14 0.00029 32.8 3.9 21 186-207 41-61 (281)
17 PRK13232 nifH nitrogenase redu 55.5 12 0.00027 33.0 3.3 19 185-204 25-43 (273)
18 cd02036 MinD Bacterial cell di 55.2 17 0.00036 29.3 3.8 20 187-207 26-45 (179)
19 cd02040 NifH NifH gene encodes 52.3 22 0.00048 30.9 4.3 19 187-207 27-45 (270)
20 TIGR03371 cellulose_yhjQ cellu 47.7 30 0.00065 29.6 4.4 16 185-201 26-41 (246)
21 cd03110 Fer4_NifH_child This p 46.9 13 0.00028 30.4 1.8 15 191-205 25-39 (179)
22 TIGR01968 minD_bact septum sit 46.8 25 0.00054 30.2 3.7 14 191-204 31-44 (261)
23 cd02117 NifH_like This family 46.4 25 0.00055 29.7 3.6 20 187-208 26-45 (212)
24 cd03111 CpaE_like This protein 45.4 49 0.0011 24.9 4.7 22 191-222 30-51 (106)
25 PRK13185 chlL protochlorophyll 44.9 27 0.00059 30.6 3.7 20 187-208 28-47 (270)
26 TIGR02016 BchX chlorophyllide 44.7 26 0.00056 31.8 3.6 18 185-203 24-41 (296)
27 TIGR01281 DPOR_bchL light-inde 44.3 26 0.00055 30.7 3.4 19 187-207 26-44 (268)
28 PRK10037 cell division protein 44.1 24 0.00052 30.7 3.2 21 184-206 25-45 (250)
29 PRK13234 nifH nitrogenase redu 43.7 28 0.0006 31.4 3.6 18 186-204 29-46 (295)
30 PF02701 zf-Dof: Dof domain, z 42.9 8.1 0.00018 27.1 0.0 10 169-178 16-25 (63)
31 PRK13230 nitrogenase reductase 42.8 26 0.00056 31.0 3.3 24 183-208 23-46 (279)
32 PRK13235 nifH nitrogenase redu 42.1 25 0.00054 31.1 3.0 21 183-204 23-43 (274)
33 PF00977 His_biosynth: Histidi 39.4 33 0.00071 29.8 3.3 49 150-205 10-59 (229)
34 PRK13233 nifH nitrogenase redu 39.2 36 0.00079 29.9 3.6 14 191-204 32-45 (275)
35 cd02037 MRP-like MRP (Multiple 38.6 35 0.00075 27.7 3.2 15 187-202 26-40 (169)
36 TIGR01007 eps_fam capsular exo 37.4 42 0.00091 28.0 3.6 16 187-203 44-59 (204)
37 PF02310 B12-binding: B12 bind 34.7 1.2E+02 0.0026 22.7 5.5 45 177-223 17-61 (121)
38 TIGR03029 EpsG chain length de 34.6 49 0.0011 29.1 3.7 17 187-204 130-146 (274)
39 TIGR00734 hisAF_rel hisA/hisF 34.4 88 0.0019 27.1 5.2 36 171-207 32-67 (221)
40 TIGR03018 pepcterm_TyrKin exop 34.0 51 0.0011 27.8 3.6 14 191-204 66-79 (207)
41 TIGR03453 partition_RepA plasm 33.7 51 0.0011 30.9 3.8 19 187-207 131-149 (387)
42 CHL00072 chlL photochlorophyll 33.4 44 0.00096 30.1 3.3 17 184-201 23-39 (290)
43 cd02032 Bchl_like This family 32.8 46 0.001 29.1 3.2 17 186-204 25-41 (267)
44 cd04723 HisA_HisF Phosphoribos 32.7 80 0.0017 27.5 4.7 55 150-205 10-64 (233)
45 PF13050 DUF3911: Protein of u 32.5 18 0.00039 25.7 0.4 11 168-178 25-35 (77)
46 TIGR03815 CpaE_hom_Actino heli 31.5 55 0.0012 29.7 3.5 14 191-204 123-136 (322)
47 cd02033 BchX Chlorophyllide re 31.1 49 0.0011 30.7 3.2 20 191-211 60-79 (329)
48 PF06564 YhjQ: YhjQ protein; 30.3 54 0.0012 29.2 3.2 23 177-200 18-40 (243)
49 PRK13231 nitrogenase reductase 28.7 41 0.00088 29.4 2.1 15 185-201 26-40 (264)
50 PRK13587 1-(5-phosphoribosyl)- 28.5 1E+02 0.0022 26.9 4.6 46 150-202 12-58 (234)
51 PRK11670 antiporter inner memb 27.8 69 0.0015 30.1 3.6 24 185-210 132-155 (369)
52 PRK13869 plasmid-partitioning 27.4 75 0.0016 30.2 3.8 22 185-208 146-167 (405)
53 PF01656 CbiA: CobQ/CobB/MinD/ 27.4 67 0.0015 26.0 3.1 13 190-202 27-39 (195)
54 PRK10175 lipoprotein; Provisio 27.1 64 0.0014 23.5 2.5 10 189-198 45-54 (75)
55 PF00220 Hormone_4: Neurohypop 27.0 20 0.00044 15.6 -0.1 6 172-177 1-6 (9)
56 PRK13849 putative crown gall t 27.0 67 0.0015 28.0 3.2 19 187-207 28-46 (231)
57 cd00525 AE_Prim_S_like AE_Prim 25.3 52 0.0011 25.5 2.0 13 191-203 54-66 (136)
58 cd00550 ArsA_ATPase Oxyanion-t 24.1 91 0.002 27.4 3.5 24 187-213 26-49 (254)
59 COG0489 Mrp ATPases involved i 23.3 98 0.0021 27.6 3.6 14 191-204 87-100 (265)
60 COG1192 Soj ATPases involved i 22.6 1.1E+02 0.0025 26.4 3.8 21 191-212 33-53 (259)
61 PRK14114 1-(5-phosphoribosyl)- 22.2 1.5E+02 0.0032 26.1 4.5 41 166-207 21-62 (241)
62 PRK02888 nitrous-oxide reducta 21.1 94 0.002 31.6 3.2 64 160-244 127-201 (635)
63 PRK09822 lipopolysaccharide co 21.1 1.3E+02 0.0029 26.8 3.8 47 165-214 160-206 (269)
64 COG0683 LivK ABC-type branched 21.0 1.3E+02 0.0028 27.7 4.0 36 177-212 135-170 (366)
65 PRK11519 tyrosine kinase; Prov 20.9 1.4E+02 0.003 30.6 4.6 14 191-204 556-569 (719)
66 cd02514 GT13_GLCNAC-TI GT13_GL 20.7 2.1E+02 0.0045 26.7 5.3 44 180-223 88-138 (334)
67 KOG0693 Myo-inositol-1-phospha 20.5 93 0.002 29.6 2.9 54 8-61 145-203 (512)
68 TIGR01005 eps_transp_fam exopo 20.3 1.2E+02 0.0026 31.0 4.0 17 191-207 576-592 (754)
69 KOG3457 Sec61 protein transloc 20.1 1.7E+02 0.0037 21.9 3.6 21 1-22 2-22 (88)
No 1
>PTZ00063 histone deacetylase; Provisional
Probab=100.00 E-value=8.3e-61 Score=449.23 Aligned_cols=216 Identities=23% Similarity=0.365 Sum_probs=191.0
Q ss_pred CCceeEEECcccCcccCCCCCCCCCCchHHHHHHHHHHHCCCCCCceeecCCCCCHHHHhccCCHHHHHHHhcCCCcccc
Q 025519 32 IFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSII 111 (251)
Q Consensus 32 ~~~~~~vy~~~~~~h~~~~~~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~p~~as~~~L~~vHs~~Yv~~l~~~~~~~~~ 111 (251)
+.++.++|+|+|..|.++ .+|||+|.|+++++++|.+.|+...+++++|++|+.++|.+||+++||++|++..+....
T Consensus 3 ~~~v~~~yd~~~~~h~~g--~~HP~~P~Rl~~~~~ll~~~gl~~~~~~~~p~~At~eeL~~vHs~~YI~~L~~~~~~~~~ 80 (436)
T PTZ00063 3 RKRVSYFYDPDIGSYYYG--PGHPMKPQRIRMAHALILSYDLYKHMEIYRPHKSVEPELVLFHDEEYVDFLSSISPENYR 80 (436)
T ss_pred CceEEEEECccccCcCCc--CcCCcChHHHHHHHHHHHhCCCcccCeEecCCCCCHHHHHHhCCHHHHHHHHHhChhhcc
Confidence 467899999999999764 689999999999999999999999899999999999999999999999999987653211
Q ss_pred ---cccCCcccC--CCcccccccHHHHHHHhcHHHHHHHHHHHc--CceeecCCCCCCCCCCCCCCccccccHHHHHHHH
Q 025519 112 ---IEVPPVALF--PNCLVQRKVLYPFRKQVGGTILAAKLAKER--GWAINVGGGFHHCSADEGGGFCAYADISLCIHYA 184 (251)
Q Consensus 112 ---~e~~~~~~~--~d~~~~~~~~~~a~~a~G~~l~aa~~~~~~--~~a~~~~~G~HHA~~~~~~GFC~fNnvAiAa~~l 184 (251)
..+....++ .||++++++++++++++||+|.||+.++++ ++|++|+||+|||++++++|||+||||||||++|
T Consensus 81 ~~~~~~~~f~lg~~~D~pv~~gl~~~a~~aaGgsl~Aa~~l~~g~~~iAin~~GG~HHA~~~~A~GFC~~NdiaiAi~~L 160 (436)
T PTZ00063 81 DFTYQLKRFNVGEATDCPVFDGLFEFQQSCAGASIDGAYKLNNHQADICVNWSGGLHHAKRSEASGFCYINDIVLGILEL 160 (436)
T ss_pred cchhhhhhcccCCCCCCCcccHHHHHHHHHHhHHHHHHHHHHcCCCCEEeeCCCCCCCCccCCCCceeeecHHHHHHHHH
Confidence 011111233 599999999999999999999999998753 5899999999999999999999999999999999
Q ss_pred HHhCCCCeEEEEccCCcCChhhhHhhhCCCCEEEEeecCCC-CCCCCccc-------CCceeeeccCCCCCCCCC
Q 025519 185 FVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG-IYPRDYEA-------RRFIDQKVEVVVNNQYTS 251 (251)
Q Consensus 185 ~~~~~~~rV~IiD~DvHhGnGtq~if~~d~~Vl~iSiH~~~-~yP~tg~~-------~~~~~~~vpl~~g~~d~~ 251 (251)
++.+ +||+|||||||||||||++||+||+|||+|+|+.+ |||+||.. ++++++||||++|++|++
T Consensus 161 ~~~~--~RVliID~DvHHGdGtqe~F~~~~~VltvS~H~~~~ffPgtG~~~e~G~g~G~g~~vNvPL~~G~~D~~ 233 (436)
T PTZ00063 161 LKYH--ARVMYIDIDVHHGDGVEEAFYVTHRVMTVSFHKFGDFFPGTGDVTDIGVAQGKYYSVNVPLNDGIDDDS 233 (436)
T ss_pred HHhC--CeEEEEeCCCCCCcchHHHhccCCCeEEEEeccCCCcCCCCCCccccCCCCCCceEEEeeCCCCCCHHH
Confidence 9864 79999999999999999999999999999999975 99999864 357899999999999963
No 2
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.1e-60 Score=438.68 Aligned_cols=211 Identities=27% Similarity=0.369 Sum_probs=188.9
Q ss_pred CceeEEECcccCcccCCCCCCCCCCchHHHHHHHHHHHCCCCCCceeecCCCCCHHHHhccCCHHHHHHHhcCCCccccc
Q 025519 33 FKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIII 112 (251)
Q Consensus 33 ~~~~~vy~~~~~~h~~~~~~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~p~~as~~~L~~vHs~~Yv~~l~~~~~~~~~~ 112 (251)
|++.++|++.+..|.+ +.+|||+|.|++++.++|++.++...+++++|+++++++|++||+++||++|++.++..+
T Consensus 2 ~~~~~~~~~~~~~~~~--~~~Hpe~p~R~~~~~~~l~~~~~~~~~~~~~p~~~~~~~l~~vH~~~yv~~l~~~~~~~~-- 77 (340)
T COG0123 2 MKTALIYHPEFLEHEP--PPGHPENPDRLRLILELLESSGLPDSLELVEPRPATLEELLLVHSPDYVEFLESLSEEEG-- 77 (340)
T ss_pred CcceEeeCHHHhcCCC--CCCCCCChHHHHHHHHHHHhcCccccccccCCCcCCHHHHHhhCCHHHHHHHHHhccccc--
Confidence 6789999999988865 479999999999999999999988888999999999999999999999999999887521
Q ss_pred ccCCcccCCCcccccccHHHHHHHhcHHHHHHHHHHHc--CceeecCCCCCCCCCCCCCCccccccHHHHHHHHHHhCCC
Q 025519 113 EVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER--GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNI 190 (251)
Q Consensus 113 e~~~~~~~~d~~~~~~~~~~a~~a~G~~l~aa~~~~~~--~~a~~~~~G~HHA~~~~~~GFC~fNnvAiAa~~l~~~~~~ 190 (251)
...++.||++++++++++++++|++++|++.+++. ..++++.||||||++++++|||+|||+||||++|+++ +.
T Consensus 78 ---~~~~d~d~~~s~~~~~~a~~a~G~al~A~~~v~~g~~~~~~~~rppgHHA~~~~a~GFC~fNn~Aiaa~~l~~~-~~ 153 (340)
T COG0123 78 ---YGNLDGDTPVSPGTYEAARLAAGGALTAVDAVLEGEDNAFALVRPPGHHAGRDRASGFCLFNNVAIAAKYLLKK-GV 153 (340)
T ss_pred ---cccccCCCccChHHHHHHHHHhhHHHHHHHHHHcCccceEEECCCCcccccCCCCceeeeecHHHHHHHHHHHc-CC
Confidence 23567899999999999999999999999999874 3344444445999999999999999999999999988 89
Q ss_pred CeEEEEccCCcCChhhhHhhhCCCCEEEEeecCC--CCCCCCcccC------CceeeeccCCCCCCCCC
Q 025519 191 SRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNP--GIYPRDYEAR------RFIDQKVEVVVNNQYTS 251 (251)
Q Consensus 191 ~rV~IiD~DvHhGnGtq~if~~d~~Vl~iSiH~~--~~yP~tg~~~------~~~~~~vpl~~g~~d~~ 251 (251)
+||+|||||+|||||||+|||+|++|+++|+|+. .+|||||... +++++|||||+|++|++
T Consensus 154 ~RVaIiD~DvHHGnGTqeify~~~~V~~~S~H~~~~~~yPgtg~~~e~g~g~~g~~vNiPLp~g~~d~~ 222 (340)
T COG0123 154 KRVAIIDFDVHHGNGTQEIFYDDDDVLTVSLHQDGRPFYPGTGGADEIGEGKEGNNVNIPLPPGTGDDS 222 (340)
T ss_pred CcEEEEEecCCCChhhHHHHccCCCeEEEeccCCCCCCCCcCCCccccccCcccceEeeecCCCCCcHH
Confidence 9999999999999999999999999999999995 7999999742 36999999999999974
No 3
>PTZ00346 histone deacetylase; Provisional
Probab=100.00 E-value=6e-60 Score=441.26 Aligned_cols=215 Identities=25% Similarity=0.357 Sum_probs=184.9
Q ss_pred CCceeEE----ECcccCcccCCCCCCCCCCchHHHHHHHHHHHCCCCCCceeecCCCCCHHHHhccCCHHHHHHHhcCCC
Q 025519 32 IFKLPLI----YSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPN 107 (251)
Q Consensus 32 ~~~~~~v----y~~~~~~h~~~~~~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~p~~as~~~L~~vHs~~Yv~~l~~~~~ 107 (251)
..++.+| |.+++..+. ++.+|||+|+|+++++++|++.|+...+.+++|++|+.++|++||+++||++|++...
T Consensus 19 ~~~~~~~~~~~y~~~~~~~~--~~~~HPe~P~Rl~~~~~ll~~~gl~~~~~~~~p~~At~eeL~~vHs~~YI~~l~~~~~ 96 (429)
T PTZ00346 19 RGRVALIDTSGYASDMNISA--FVPQHAMKPYRVLAAMEIVRSLKIDAHCRTVVPPLVKVEELMAYHTDTYLANLGLHSC 96 (429)
T ss_pred cceeEEEecCcccccccccc--CCCcCCCCHHHHHHHHHHHHhcCCcccCeeecCCCCCHHHHHHhCCHHHHHHHHHhcc
Confidence 3456799 455555543 4578999999999999999999998888999999999999999999999999987432
Q ss_pred ccc--ccccCCcccCCCcccccccHHHHHHHhcHHHHHHHHHHHc--CceeecCCCCCCCCCCCCCCccccccHHHHHHH
Q 025519 108 VSI--IIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER--GWAINVGGGFHHCSADEGGGFCAYADISLCIHY 183 (251)
Q Consensus 108 ~~~--~~e~~~~~~~~d~~~~~~~~~~a~~a~G~~l~aa~~~~~~--~~a~~~~~G~HHA~~~~~~GFC~fNnvAiAa~~ 183 (251)
... ..+.....+++||++++++++++++++||++.|++.++++ ++|++|+||+|||++++++|||+|||+||||++
T Consensus 97 ~~~~~~~~~~~~~~d~Dtpv~~~~~~~a~laaGgsl~Aa~~v~~g~~~~Ai~~pGG~HHA~~~~a~GFC~fNdvAIAa~~ 176 (429)
T PTZ00346 97 RSWLWNAETSKVFFSGDCPPVEGLMEHSIATASGTLMGAVLLNSGQVDVAVHWGGGMHHSKCGECSGFCYVNDIVLGILE 176 (429)
T ss_pred cccccccccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEeCCCCcCcCCCCCCCcchHHhHHHHHHHH
Confidence 110 0111123456899999999999999999999999998854 489999999999999999999999999999999
Q ss_pred HHHhCCCCeEEEEccCCcCChhhhHhhhCCCCEEEEeecCCC--CCCCCccc-------CCceeeeccCCCCCCCC
Q 025519 184 AFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG--IYPRDYEA-------RRFIDQKVEVVVNNQYT 250 (251)
Q Consensus 184 l~~~~~~~rV~IiD~DvHhGnGtq~if~~d~~Vl~iSiH~~~--~yP~tg~~-------~~~~~~~vpl~~g~~d~ 250 (251)
|+++ .+||+|||||||||||||+|||+||+|||+|+|+.+ |||+||.. +.++++|||||+|++|+
T Consensus 177 ll~~--~~RVliID~DVHHGnGTqeiF~~dp~Vl~vSiHq~~~~fyPgtG~~~e~G~g~G~g~~vNVPL~~G~~D~ 250 (429)
T PTZ00346 177 LLKC--HDRVLYVDIDMHHGDGVDEAFCTSDRVFTLSLHKFGESFFPGTGHPRDVGYGRGRYYSMNLAVWDGITDF 250 (429)
T ss_pred HHHc--CCeEEEEeCCCCCCchHHHHHcCCCCeEEEEecCCCCCCCCCCCCccccCCCCCceeEEeeeCCCCcCHH
Confidence 9986 479999999999999999999999999999999865 99999864 24799999999999986
No 4
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=100.00 E-value=2.9e-58 Score=419.63 Aligned_cols=201 Identities=25% Similarity=0.395 Sum_probs=155.5
Q ss_pred CcccCcccCCCCCCCCCCchHHHHHHHHHHHC-CCCCCceeecCCCCCHHHHhccCCHHHHHHHhcCCCcccccc-cCCc
Q 025519 40 SPDYDISFLGIEKLHPFDSSKWGRICQFLSSE-GFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIE-VPPV 117 (251)
Q Consensus 40 ~~~~~~h~~~~~~~Hpe~p~R~~~i~~~L~~~-gl~~~~~~~~p~~as~~~L~~vHs~~Yv~~l~~~~~~~~~~e-~~~~ 117 (251)
||.|. + .++++|||+|+|++.+.+.|++. ++++. ++++.++|++|||++||+.|++.+......+ ....
T Consensus 1 ~~~~~-~--~~~~~Hpe~p~R~~~i~~~L~~~~~l~~~------~~a~~~~L~~vH~~~Yv~~l~~~~~~~~~~~~~~~~ 71 (311)
T PF00850_consen 1 HPQYQ-H--QLGDGHPESPERLESIVEALKESYGLLPR------RPATDEELLRVHDPEYVDFLESASKEAKEEEEAGSP 71 (311)
T ss_dssp ----T-T---CCTTSSSCTHHHHHHHHHHHHTTTGGGG----------HHHHTTTS-HHHHHHHHHHHHHTSGCTHHHHH
T ss_pred CCccc-C--CCCCCcCCCHHHHHHHHHHHHHhcCCCCC------CCCCHHHHHHcCCHHHHHHHHHhccccccccccccc
Confidence 56776 3 34689999999999999999885 76543 8999999999999999999998764332211 0000
Q ss_pred ---c-c-CCCcccccccHHHHHHHhcHHHHHHHHHHH----cCceeecCCCCCCCCCCCCCCccccccHHHHHHHHHHhC
Q 025519 118 ---A-L-FPNCLVQRKVLYPFRKQVGGTILAAKLAKE----RGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQL 188 (251)
Q Consensus 118 ---~-~-~~d~~~~~~~~~~a~~a~G~~l~aa~~~~~----~~~a~~~~~G~HHA~~~~~~GFC~fNnvAiAa~~l~~~~ 188 (251)
. + +.||++++++++++++++|+++.|++.+++ ++||+++||| |||.+++++|||+||||||||+||++++
T Consensus 72 ~~~~~~~~~dt~~~~~~~~~a~~a~g~~l~a~~~v~~g~~~~~~a~~rppg-HHA~~~~a~GFC~~Nnvaiaa~~l~~~~ 150 (311)
T PF00850_consen 72 EFPNILDDGDTPISPGSWEAARLAAGGTLEAADAVLSGEIKNAFALVRPPG-HHAERDRAMGFCYFNNVAIAAKYLRKKY 150 (311)
T ss_dssp HHCCBTSSSSSEBCTTHHHHHHHHHHHHHHHHHHHHTTSSSEEEEEESS---TT-BTTBBBTTBSS-HHHHHHHHHHHTT
T ss_pred ccccccCCCCcceehHHHHHHHHHHHHHHHHHHhhhcccccceeeecCccc-cccCcCcCcceeeeccHHHHHHHHhhcc
Confidence 0 1 579999999999999999999999999984 4699997766 9999999999999999999999999988
Q ss_pred CCCeEEEEccCCcCChhhhHhhhCCCCEEEEeecC--CCCCC-CCcccC-------CceeeeccCCCCCCCC
Q 025519 189 NISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFN--PGIYP-RDYEAR-------RFIDQKVEVVVNNQYT 250 (251)
Q Consensus 189 ~~~rV~IiD~DvHhGnGtq~if~~d~~Vl~iSiH~--~~~yP-~tg~~~-------~~~~~~vpl~~g~~d~ 250 (251)
|++||+|||||+|||||||+|||+||+|+|+|||+ ..+|| +||... .++++|||||+|++|+
T Consensus 151 ~~~rV~iiD~DvHhGnGtq~if~~d~~V~~~SiH~~~~~~yP~~tG~~~e~G~~~g~g~~~NipL~~g~~d~ 222 (311)
T PF00850_consen 151 GLKRVAIIDFDVHHGNGTQEIFYDDPRVLYISIHQYPGNFYPFGTGFPDEIGEGKGKGYNLNIPLPPGTGDD 222 (311)
T ss_dssp TTSSEEEEE-SSS--HHHHHHTTT-SSEEEEEEEE-CTTSTTTSS--TT--ESGGGTTSEEEEEE-TTEBHH
T ss_pred ccceEEEEEeCCCCcccchhheeCCCCEEecCccccccccCCCcCCCccccCCCcccceeEecccccccchH
Confidence 99999999999999999999999999999999999 67999 888653 4799999999999985
No 5
>KOG1342 consensus Histone deacetylase complex, catalytic component RPD3 [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-52 Score=380.40 Aligned_cols=219 Identities=25% Similarity=0.380 Sum_probs=195.1
Q ss_pred CCCCCceeEEECcccCcccCCCCCCCCCCchHHHHHHHHHHHCCCCCCceeecCCCCCHHHHhccCCHHHHHHHhcCCCc
Q 025519 29 DIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNV 108 (251)
Q Consensus 29 ~~p~~~~~~vy~~~~~~h~~~~~~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~p~~as~~~L~~vHs~~Yv~~l~~~~~~ 108 (251)
.....++.++|+++-.. +.++.+||+.|.|++.+++++...||...+++.+|..|+.+|+.++||.+||++|++..+.
T Consensus 3 ~~~k~~V~y~yd~~vg~--~~Yg~~hpmkP~R~~mth~Lv~~YgL~k~M~i~~p~~a~~~dm~~FHt~eYi~fL~~V~p~ 80 (425)
T KOG1342|consen 3 SLIKRRVSYFYDPDVGN--FHYGQGHPMKPHRIRMTHSLVLNYGLYKKMEIYRPDKASAQDMTRFHTDEYINFLQSVTPE 80 (425)
T ss_pred CcCCceEEEEecCcccc--ccccCCCCCCcceehhhhHHHHhcchhhceeeccCCCCCHHHHHhhchHHHHHHHhhCCcc
Confidence 45667899999998643 3467899999999999999999999999999999999999999999999999999998875
Q ss_pred cccc---ccCCcccCCCcccccccHHHHHHHhcHHHHHHHHHHH--cCceeecCCCCCCCCCCCCCCccccccHHHHHHH
Q 025519 109 SIII---EVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKE--RGWAINVGGGFHHCSADEGGGFCAYADISLCIHY 183 (251)
Q Consensus 109 ~~~~---e~~~~~~~~d~~~~~~~~~~a~~a~G~~l~aa~~~~~--~~~a~~~~~G~HHA~~~~~~GFC~fNnvAiAa~~ 183 (251)
.... +.....+..||+++.++++.+++.+||+|.||+.+-. ..+|+||.||.|||+++.|+|||++|||+++|..
T Consensus 81 n~~~~~~~~~~fNvg~DCPvF~gL~~fC~~~~GgSl~aa~kLn~~~~dIaINW~GGlHHAKK~eASGFCYvNDIVL~ILe 160 (425)
T KOG1342|consen 81 NMETFNKELKQFNVGEDCPVFDGLYDYCQLYTGGSLNAAQKLNRGECDIAINWAGGLHHAKKSEASGFCYVNDIVLGILE 160 (425)
T ss_pred cccccchHHHhcCCCCCCccccCHHHHHHHhcccchHHHHHhCCCCceEEEecCcccccccccccCcceeehHHHHHHHH
Confidence 4321 2223456889999999999999999999999988643 3589999999999999999999999999999999
Q ss_pred HHHhCCCCeEEEEccCCcCChhhhHhhhCCCCEEEEeecCC--CCCCCCccc-------CCceeeeccCCCCCCCCC
Q 025519 184 AFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNP--GIYPRDYEA-------RRFIDQKVEVVVNNQYTS 251 (251)
Q Consensus 184 l~~~~~~~rV~IiD~DvHhGnGtq~if~~d~~Vl~iSiH~~--~~yP~tg~~-------~~~~~~~vpl~~g~~d~~ 251 (251)
|++. .+||++||+|+|||||+|++||..+||+|+|+|.. .||||||.. ++.|.|||||.+|.+|+|
T Consensus 161 LlK~--h~RVLYIDIDvHHGDGVEeAFy~TDRVmTvSfHKyg~~fFPGTG~l~d~G~~kGkyyavNVPL~dGidD~s 235 (425)
T KOG1342|consen 161 LLKY--HKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKYGPGFFPGTGDLSDIGAGKGKYYAVNVPLKDGIDDES 235 (425)
T ss_pred HHHh--CCceEEEEecccCCccHHHHHhccceeEEEEEEeccCCCCCCCCcceeccCCCCceEEEccchhccCCcHH
Confidence 9987 46999999999999999999999999999999985 499999964 468999999999999986
No 6
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=100.00 E-value=6.5e-42 Score=293.82 Aligned_cols=229 Identities=58% Similarity=0.995 Sum_probs=216.9
Q ss_pred hhccccccCCCCCceeEEECcccCcccCCCCCCCCCCchHHHHHHHHHHHCCCCCCceeecCCCCCHHHHhccCCHHHHH
Q 025519 21 ILSSKLYFDIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLK 100 (251)
Q Consensus 21 ~~~~~~~~~~p~~~~~~vy~~~~~~h~~~~~~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~p~~as~~~L~~vHs~~Yv~ 100 (251)
+..+++|+++|..+++++|++.|...++++.+-||++..++..|.+.|.+.+++..-.+++|.++|.++|++|||.+|++
T Consensus 2 v~~~kly~~vp~~k~pIvyS~~Y~i~FmGlEkLHPFDa~Kwg~v~kfL~~~~~l~d~~lvEp~e~t~e~L~rvHtr~YLk 81 (324)
T KOG1344|consen 2 VVWVKLYDAVPAGKLPIVYSRNYAIRFMGLEKLHPFDAAKWGHVHKFLCAMNLLTDETLVEPNEATKEDLLRVHTRKYLK 81 (324)
T ss_pred ceeeeecccCccccccEEecCccceeecchhhcCcCcccchhHHHHHHHHhccccccccccCcccCHHHHHhHhhHHHHH
Confidence 34578899999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred HHhcCCCcccccccCCcccCCCcccccccHHHHHHHhcHHHHHHHHHHHcCceeecCCCCCCCCCCCCCCccccccHHHH
Q 025519 101 SLQSSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLC 180 (251)
Q Consensus 101 ~l~~~~~~~~~~e~~~~~~~~d~~~~~~~~~~a~~a~G~~l~aa~~~~~~~~a~~~~~G~HHA~~~~~~GFC~fNnvAiA 180 (251)
.|+.....+++.|+|...+.|++++.+.++...++.+||+|.|++.+++.|+|+|.+||+||+..++++|||.|.|+-+|
T Consensus 82 slr~s~~vA~I~EiP~v~flPn~~iqrk~LrPlR~QagGtilA~kLAle~GWAINvGGGFHHcss~rGGGFC~yADItl~ 161 (324)
T KOG1344|consen 82 SLRWSIKVAQITEIPFVGFLPNCIIQRKLLRPLRLQAGGTILAAKLALERGWAINVGGGFHHCSSSRGGGFCAYADITLA 161 (324)
T ss_pred HhhccceeeEEEeccccccCchhhhhhhhccceeeccCceeehhhhhhhcCeEEeecCccceeccCCCCceeehhhHHHH
Confidence 99998888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCeEEEEccCCcCChhhhHhhhCCCCEEEEeecCCCCCCCCcccCCceeeeccCCCCCCCC
Q 025519 181 IHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVVNNQYT 250 (251)
Q Consensus 181 a~~l~~~~~~~rV~IiD~DvHhGnGtq~if~~d~~Vl~iSiH~~~~yP~tg~~~~~~~~~vpl~~g~~d~ 250 (251)
+..|-++..+.|++|||+|+|+|||-+.-|.+| .|.++.+...-+||....+.+.+.-.|.|.-||+|+
T Consensus 162 I~~lFer~~isr~mivDLDAHQGNghErdf~~~-~vyi~d~ynr~iyp~D~~Ak~~Ir~kVEl~~gTedd 230 (324)
T KOG1344|consen 162 IFFLFERKAISRAMIVDLDAHQGNGHERDFEDD-AVYIFDMYNRFIYPRDHVAKESIRCKVELRNGTEDD 230 (324)
T ss_pred HHHHHhhhhhhheEEEecccccCCccccccccc-eeehhhhhhhhccchhHHHHHHhhheeeeecCCCch
Confidence 999998888999999999999999999999998 788889988889999888777778899999999986
No 7
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics]
Probab=99.97 E-value=5.5e-32 Score=268.86 Aligned_cols=188 Identities=22% Similarity=0.282 Sum_probs=140.6
Q ss_pred CCCCCCchHHHHHHHHHHHCCCCCCceeecCCCCCHHHHhccCCHHHHHHHhcCCCccc---c----cccCCcccCCCcc
Q 025519 52 KLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSI---I----IEVPPVALFPNCL 124 (251)
Q Consensus 52 ~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~p~~as~~~L~~vHs~~Yv~~l~~~~~~~~---~----~e~~~~~~~~d~~ 124 (251)
.+||+.|.| ....+. .|++.+|+.+ ||.++|+.||+..|+..+........ . .+......++|+.
T Consensus 463 ~~~~~~p~r---~~t~~~-~gl~~~c~r~----at~~el~~vHs~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~dt~ 534 (797)
T KOG1343|consen 463 SRSPESPAR---FTTGLH-TGLLGKCERI----ATLEELQLVHSEAHVLLYGSRKLLGDLSLKFESRLPCGGIGVDSDTW 534 (797)
T ss_pred cCCcccchh---hhcccc-cccccccccc----cchhhhhhcccchhhcccchhhhcccccchhhhhccccceeecccHH
Confidence 378999999 222222 7888888766 99999999999999998652211110 0 1112223344444
Q ss_pred ccccc-HHHHHHHhcHHHHHHHHHHHcCceeecCCCCCCCCCCCCCCccccccHHHHHHHHHHhCCCCeEEEEccCCcCC
Q 025519 125 VQRKV-LYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQG 203 (251)
Q Consensus 125 ~~~~~-~~~a~~a~G~~l~aa~~~~~~~~a~~~~~G~HHA~~~~~~GFC~fNnvAiAa~~l~~~~~~~rV~IiD~DvHhG 203 (251)
++.-. ..++++++++.+..+..+. .|||++|+|| |||....++|||+|||+|||+++|+..+...||+|+|||||||
T Consensus 535 ~~~~~ssga~~~av~~v~~~~~~~~-~g~avvRppG-Hha~~~~a~gfc~fn~vaiaak~l~~~~~~~rilivdwDvhhg 612 (797)
T KOG1343|consen 535 WNELHSSGAARLAVGCVIELAFKVA-SGFAVVRPPG-HHAEASTAMGFCFFNSVAIAAKLLQQRSKASRILIVDWDVHHG 612 (797)
T ss_pred HHHHHHHHHHHHhcchhhhhhhhhh-cceeEecCCc-cccccCCcceeeeecchhhhhHHhhhhhhhcceEEEeecccCC
Confidence 43321 2233444444444443333 4899999999 9999999999999999999999999988789999999999999
Q ss_pred hhhhHhhhCCCCEEEEeecC---CCCCCCCccc-------CCceeeeccCCCCCCC
Q 025519 204 NGHEKDFSSDSRVYILDMFN---PGIYPRDYEA-------RRFIDQKVEVVVNNQY 249 (251)
Q Consensus 204 nGtq~if~~d~~Vl~iSiH~---~~~yP~tg~~-------~~~~~~~vpl~~g~~d 249 (251)
||||.+||.|++|||+|+|. .+|||++|.. +.++++|||.+.|..+
T Consensus 613 ngtq~~f~~~~~vlyislhr~~~G~~fp~~g~~~e~g~~~g~g~~vNv~~~~~~~~ 668 (797)
T KOG1343|consen 613 NGTQQAFYSDPSVLYISLHRHDDGNFFPGSGAPDEVGKGEGVGFNVNVAWTGGLDP 668 (797)
T ss_pred cceeeeeccCccccccccchhccCCcCCCCCCchhcccccccceeecccccCCCCC
Confidence 99999999999999999997 3699999643 4699999999998876
No 8
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics]
Probab=99.92 E-value=5.9e-26 Score=225.92 Aligned_cols=214 Identities=16% Similarity=0.147 Sum_probs=174.9
Q ss_pred CCceeEEECcccCcccCCCCCCCC-CCchHHHHHHHHHHHCCCCCCceeecC-CCCCHHHHhccCCHHHHHHHhcCCCcc
Q 025519 32 IFKLPLIYSPDYDISFLGIEKLHP-FDSSKWGRICQFLSSEGFLDKNCIVEP-LEASKEDLLVVHSESYLKSLQSSPNVS 109 (251)
Q Consensus 32 ~~~~~~vy~~~~~~h~~~~~~~Hp-e~p~R~~~i~~~L~~~gl~~~~~~~~p-~~as~~~L~~vHs~~Yv~~l~~~~~~~ 109 (251)
..++.++|++.+..|.......|+ +.++|+..+.+.+++.++.+.+.+..+ +.+++++++.+|+++|++.+.......
T Consensus 28 ~~~~~l~~~~~~~~h~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~ke~~~~~~~t~~~~ 107 (797)
T KOG1343|consen 28 QIQKQLLFAEFQKQHENQQELLEKEEKLERLRQIEEELERHRLEQPLLILRNKREAKESAVASVHVKEKLQEFLLSKKMT 107 (797)
T ss_pred hhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHHhhccCCccccccccchhhcccchhcccccHHHHHHHHhhhhhc
Confidence 467899999999998533333444 899999999999999888888777766 899999999999999999998765322
Q ss_pred ccccc-CCcccCCCcccccccHHHHHHHhcHHHHHHHHHH----HcCceeecCCCCCCCCCCCCCCccccccHHHHHHHH
Q 025519 110 IIIEV-PPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAK----ERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYA 184 (251)
Q Consensus 110 ~~~e~-~~~~~~~d~~~~~~~~~~a~~a~G~~l~aa~~~~----~~~~a~~~~~G~HHA~~~~~~GFC~fNnvAiAa~~l 184 (251)
..... ......+..+.++.+...+.+++|+.+...+.++ .++++.++++| |||.++...|||+|||||++++..
T Consensus 108 ~e~~l~~~~~~~~~~~~~~~s~~~a~~a~~~~~~~~~~~~~~~~~n~~a~v~p~~-hhsep~~~~~~cl~n~Va~~~~~~ 186 (797)
T KOG1343|consen 108 AEEGLNHSSSRYPSLYYTSASHSSADQASGSLSGSYKAVLAGKASNGKADFRPPG-HHSEPNLKVGFCLFNNVAERRSSP 186 (797)
T ss_pred chhhhhcccCCCCcceecCCchhhhcccCcccccccccccCCcccCccCcCCCCC-CccccchhcchhHHHHHHHHhhcc
Confidence 11101 1112246677888888999999999998666653 46789999999 999999999999999999999988
Q ss_pred HHhCCCCeEEEEccCCcCChhhhHhhhC--CCCEEEEeecC---CCCCCCCccc---------CCceeeeccCCCC
Q 025519 185 FVQLNISRVMIIDLDAHQGNGHEKDFSS--DSRVYILDMFN---PGIYPRDYEA---------RRFIDQKVEVVVN 246 (251)
Q Consensus 185 ~~~~~~~rV~IiD~DvHhGnGtq~if~~--d~~Vl~iSiH~---~~~yP~tg~~---------~~~~~~~vpl~~g 246 (251)
......+||+|+|||+|||+|||..|++ |++|+++|+|+ ..|||..... +-++++|+|...+
T Consensus 187 ~~~~~~rri~i~d~dvh~g~Gtq~~~~~~~d~~vl~~s~~r~e~~~f~P~~~~g~~~~~~~g~~~g~~~nl~~~~~ 262 (797)
T KOG1343|consen 187 LLRRKKRRILIVDWDVHHGPGTQPSSPNNGDQRVLYFSLHRLETGPFLPNITLGLATLRGGGPGLGQTGNLPWNQV 262 (797)
T ss_pred ccccccceeEeecccccCCCCCCCccCCCcccccccccchhcccCCcCCCCccchHHHhCcCCCcceeeccchhhc
Confidence 8777689999999999999999999999 99999999998 3699996532 3588999988764
No 9
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=80.31 E-value=1.3 Score=35.82 Aligned_cols=46 Identities=24% Similarity=0.203 Sum_probs=34.0
Q ss_pred CCCCCCCCcccc-----ccHHHHHHHHHHhCCCCeEEEEccCCcCChhhhH
Q 025519 163 CSADEGGGFCAY-----ADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEK 208 (251)
Q Consensus 163 A~~~~~~GFC~f-----NnvAiAa~~l~~~~~~~rV~IiD~DvHhGnGtq~ 208 (251)
-..-.++|||++ .++-.|.+|+-...=-+|++-||||.=.=+|-|.
T Consensus 72 r~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~GF~eGRQy 122 (153)
T KOG0121|consen 72 RFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAGFVEGRQY 122 (153)
T ss_pred cCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccccchhhhhh
Confidence 345678999987 3566677877544334899999999987777774
No 10
>PRK13236 nitrogenase reductase; Reviewed
Probab=71.90 E-value=4.1 Score=36.84 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=22.1
Q ss_pred HHHHHHHHHhCCCCeEEEEccCCcCChhhhHhhh
Q 025519 178 SLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFS 211 (251)
Q Consensus 178 AiAa~~l~~~~~~~rV~IiD~DvHhGnGtq~if~ 211 (251)
++-..+++.+.| +||++||+|.+.+| |.-+|.
T Consensus 23 a~NLA~~La~~G-~rVLliD~D~q~~~-~~~l~~ 54 (296)
T PRK13236 23 SQNTLAAMAEMG-QRILIVGCDPKADS-TRLMLH 54 (296)
T ss_pred HHHHHHHHHHCC-CcEEEEEccCCCCc-cchhcc
Confidence 444444555655 79999999999877 555554
No 11
>PF12023 DUF3511: Domain of unknown function (DUF3511); InterPro: IPR021899 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 50 amino acids in length. This domain has two completely conserved residues (Y and K) that may be functionally important.
Probab=71.84 E-value=1.1 Score=29.63 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=20.2
Q ss_pred CCCcHHHHHhhhhhccccccCCCCCc
Q 025519 9 VTTDAETLKRNRILSSKLYFDIPIFK 34 (251)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~p~~~ 34 (251)
..++||.+||+|+-+-+.|..+..++
T Consensus 2 ~~~dpE~kRkkRVA~Yk~y~vEGKvK 27 (47)
T PF12023_consen 2 GFNDPEMKRKKRVASYKVYAVEGKVK 27 (47)
T ss_pred CCCCHHHHHHHHHHhhheeeeehHHH
Confidence 35799999999998877776655544
No 12
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=71.02 E-value=5.2 Score=34.39 Aligned_cols=20 Identities=30% Similarity=0.531 Sum_probs=15.4
Q ss_pred HHHhCCCCeEEEEccCCcCCh
Q 025519 184 AFVQLNISRVMIIDLDAHQGN 204 (251)
Q Consensus 184 l~~~~~~~rV~IiD~DvHhGn 204 (251)
++.+.| +||++||+|..+||
T Consensus 24 ~la~~g-~~VlliD~D~~~~~ 43 (251)
T TIGR01969 24 ALAKLG-KKVLALDADITMAN 43 (251)
T ss_pred HHHHCC-CeEEEEeCCCCCcc
Confidence 333455 79999999998876
No 13
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=60.10 E-value=12 Score=33.05 Aligned_cols=17 Identities=24% Similarity=0.561 Sum_probs=13.0
Q ss_pred HHhCCCCeEEEEccCCcC
Q 025519 185 FVQLNISRVMIIDLDAHQ 202 (251)
Q Consensus 185 ~~~~~~~rV~IiD~DvHh 202 (251)
+.+.| +||++||+|..-
T Consensus 24 La~~G-~~VlliD~D~q~ 40 (275)
T TIGR01287 24 LAEMG-KKVMIVGCDPKA 40 (275)
T ss_pred HHHCC-CeEEEEeCCCCC
Confidence 34455 799999999874
No 14
>PRK10818 cell division inhibitor MinD; Provisional
Probab=59.58 E-value=12 Score=32.92 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=15.5
Q ss_pred HhCCCCeEEEEccCCcCChhh
Q 025519 186 VQLNISRVMIIDLDAHQGNGH 206 (251)
Q Consensus 186 ~~~~~~rV~IiD~DvHhGnGt 206 (251)
.+.| +||++||+|.+.||-+
T Consensus 28 a~~g-~~vllvD~D~~~~~~~ 47 (270)
T PRK10818 28 AQKG-KKTVVIDFDIGLRNLD 47 (270)
T ss_pred HHCC-CeEEEEECCCCCCChh
Confidence 3445 7999999999877743
No 15
>PHA02518 ParA-like protein; Provisional
Probab=59.03 E-value=15 Score=30.63 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=15.5
Q ss_pred HHhCCCCeEEEEccCCcCChhhhH
Q 025519 185 FVQLNISRVMIIDLDAHQGNGHEK 208 (251)
Q Consensus 185 ~~~~~~~rV~IiD~DvHhGnGtq~ 208 (251)
+.+.| +||++||+|- +|+-+..
T Consensus 25 la~~g-~~vlliD~D~-q~~~~~~ 46 (211)
T PHA02518 25 LHADG-HKVLLVDLDP-QGSSTDW 46 (211)
T ss_pred HHhCC-CeEEEEeCCC-CCChHHH
Confidence 33445 7999999996 5666554
No 16
>CHL00175 minD septum-site determining protein; Validated
Probab=57.60 E-value=14 Score=32.80 Aligned_cols=21 Identities=33% Similarity=0.298 Sum_probs=16.5
Q ss_pred HhCCCCeEEEEccCCcCChhhh
Q 025519 186 VQLNISRVMIIDLDAHQGNGHE 207 (251)
Q Consensus 186 ~~~~~~rV~IiD~DvHhGnGtq 207 (251)
.+.| +||++||+|...||-+.
T Consensus 41 a~~g-~~vlliD~D~~~~~l~~ 61 (281)
T CHL00175 41 ARLG-YRVALIDADIGLRNLDL 61 (281)
T ss_pred HhCC-CeEEEEeCCCCCCChhh
Confidence 3445 79999999999887554
No 17
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=55.49 E-value=12 Score=32.98 Aligned_cols=19 Identities=5% Similarity=0.433 Sum_probs=14.5
Q ss_pred HHhCCCCeEEEEccCCcCCh
Q 025519 185 FVQLNISRVMIIDLDAHQGN 204 (251)
Q Consensus 185 ~~~~~~~rV~IiD~DvHhGn 204 (251)
+.+.| +||++||+|.+..+
T Consensus 25 La~~G-~rVllvD~Dpq~~~ 43 (273)
T PRK13232 25 LSTMG-NKILLVGCDPKADS 43 (273)
T ss_pred HHhhC-CCeEEEeccccccc
Confidence 33445 79999999998654
No 18
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=55.22 E-value=17 Score=29.29 Aligned_cols=20 Identities=35% Similarity=0.330 Sum_probs=15.6
Q ss_pred hCCCCeEEEEccCCcCChhhh
Q 025519 187 QLNISRVMIIDLDAHQGNGHE 207 (251)
Q Consensus 187 ~~~~~rV~IiD~DvHhGnGtq 207 (251)
+.| .||++||.|...||-+.
T Consensus 26 ~~g-~~vllvD~D~~~~~~~~ 45 (179)
T cd02036 26 QLG-YKVVLIDADLGLRNLDL 45 (179)
T ss_pred hCC-CeEEEEeCCCCCCCchh
Confidence 444 79999999998876554
No 19
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=52.28 E-value=22 Score=30.94 Aligned_cols=19 Identities=21% Similarity=0.525 Sum_probs=13.9
Q ss_pred hCCCCeEEEEccCCcCChhhh
Q 025519 187 QLNISRVMIIDLDAHQGNGHE 207 (251)
Q Consensus 187 ~~~~~rV~IiD~DvHhGnGtq 207 (251)
+.| +||++||+|-. ||-+.
T Consensus 27 ~~G-~kVlliD~Dpq-~n~~~ 45 (270)
T cd02040 27 EMG-KKVMIVGCDPK-ADSTR 45 (270)
T ss_pred hCC-CeEEEEEcCCC-CCchh
Confidence 445 79999999984 55444
No 20
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=47.69 E-value=30 Score=29.58 Aligned_cols=16 Identities=38% Similarity=0.557 Sum_probs=12.0
Q ss_pred HHhCCCCeEEEEccCCc
Q 025519 185 FVQLNISRVMIIDLDAH 201 (251)
Q Consensus 185 ~~~~~~~rV~IiD~DvH 201 (251)
+.+.| +||++||+|..
T Consensus 26 la~~g-~~VlliD~D~q 41 (246)
T TIGR03371 26 LKLLG-EPVLAIDLDPQ 41 (246)
T ss_pred HHhCC-CcEEEEeCCCc
Confidence 33444 79999999984
No 21
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=46.86 E-value=13 Score=30.42 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=12.9
Q ss_pred CeEEEEccCCcCChh
Q 025519 191 SRVMIIDLDAHQGNG 205 (251)
Q Consensus 191 ~rV~IiD~DvHhGnG 205 (251)
+||++||.|...+|-
T Consensus 25 ~~vlliD~D~~~~~~ 39 (179)
T cd03110 25 KNVVLADCDVDAPNL 39 (179)
T ss_pred hCcEEEECCCCCCch
Confidence 699999999998663
No 22
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=46.76 E-value=25 Score=30.23 Aligned_cols=14 Identities=36% Similarity=0.520 Sum_probs=12.1
Q ss_pred CeEEEEccCCcCCh
Q 025519 191 SRVMIIDLDAHQGN 204 (251)
Q Consensus 191 ~rV~IiD~DvHhGn 204 (251)
+||++||.|...||
T Consensus 31 ~~vlliD~D~~~~~ 44 (261)
T TIGR01968 31 KKVVLIDADIGLRN 44 (261)
T ss_pred CeEEEEECCCCCCC
Confidence 79999999997665
No 23
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=46.45 E-value=25 Score=29.74 Aligned_cols=20 Identities=10% Similarity=0.341 Sum_probs=13.9
Q ss_pred hCCCCeEEEEccCCcCChhhhH
Q 025519 187 QLNISRVMIIDLDAHQGNGHEK 208 (251)
Q Consensus 187 ~~~~~rV~IiD~DvHhGnGtq~ 208 (251)
+.| +||++||.|.. ||-+..
T Consensus 26 ~~G-~rvLliD~D~q-~~~~~~ 45 (212)
T cd02117 26 EMG-KKVLQVGCDPK-ADSTRL 45 (212)
T ss_pred HCC-CcEEEEeCCCC-CCcccc
Confidence 444 79999999965 454443
No 24
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=45.39 E-value=49 Score=24.88 Aligned_cols=22 Identities=32% Similarity=0.620 Sum_probs=17.6
Q ss_pred CeEEEEccCCcCChhhhHhhhCCCCEEEEeec
Q 025519 191 SRVMIIDLDAHQGNGHEKDFSSDSRVYILDMF 222 (251)
Q Consensus 191 ~rV~IiD~DvHhGnGtq~if~~d~~Vl~iSiH 222 (251)
++|+++|.|.+.++ ++.++..-
T Consensus 30 ~~~~l~d~d~~~~~----------D~IIiDtp 51 (106)
T cd03111 30 RRVLLVDLDLQFGD----------DYVVVDLG 51 (106)
T ss_pred CcEEEEECCCCCCC----------CEEEEeCC
Confidence 79999999999987 46666553
No 25
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=44.92 E-value=27 Score=30.58 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=14.2
Q ss_pred hCCCCeEEEEccCCcCChhhhH
Q 025519 187 QLNISRVMIIDLDAHQGNGHEK 208 (251)
Q Consensus 187 ~~~~~rV~IiD~DvHhGnGtq~ 208 (251)
+.| +||++||.|- +||=|..
T Consensus 28 ~~G-~kVLliD~Dp-q~~~t~~ 47 (270)
T PRK13185 28 KLG-KKVLQIGCDP-KHDSTFT 47 (270)
T ss_pred HCC-CeEEEEeccC-Ccchhhh
Confidence 445 7999999997 4555543
No 26
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=44.68 E-value=26 Score=31.76 Aligned_cols=18 Identities=17% Similarity=0.446 Sum_probs=13.5
Q ss_pred HHhCCCCeEEEEccCCcCC
Q 025519 185 FVQLNISRVMIIDLDAHQG 203 (251)
Q Consensus 185 ~~~~~~~rV~IiD~DvHhG 203 (251)
+.+.| +||++||+|...+
T Consensus 24 La~~g-~rVLlID~Dpq~~ 41 (296)
T TIGR02016 24 MAEMG-KRVLQLGCDPKHD 41 (296)
T ss_pred HHHCC-CeEEEEEecCCCC
Confidence 33444 7999999999764
No 27
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=44.28 E-value=26 Score=30.74 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=13.8
Q ss_pred hCCCCeEEEEccCCcCChhhh
Q 025519 187 QLNISRVMIIDLDAHQGNGHE 207 (251)
Q Consensus 187 ~~~~~rV~IiD~DvHhGnGtq 207 (251)
+.| +||++||+|-. ||-|+
T Consensus 26 ~~g-~rVLliD~D~q-~~~~~ 44 (268)
T TIGR01281 26 KLG-KRVLQIGCDPK-HDSTF 44 (268)
T ss_pred hCC-CeEEEEecCcc-ccccc
Confidence 444 79999999974 56443
No 28
>PRK10037 cell division protein; Provisional
Probab=44.07 E-value=24 Score=30.74 Aligned_cols=21 Identities=19% Similarity=0.214 Sum_probs=14.6
Q ss_pred HHHhCCCCeEEEEccCCcCChhh
Q 025519 184 AFVQLNISRVMIIDLDAHQGNGH 206 (251)
Q Consensus 184 l~~~~~~~rV~IiD~DvHhGnGt 206 (251)
++.+.| +||++||+|-. ||-+
T Consensus 25 ~La~~G-~rVLlID~D~q-~~~s 45 (250)
T PRK10037 25 SLQMLG-ENVLVIDACPD-NLLR 45 (250)
T ss_pred HHHhcC-CcEEEEeCChh-hhHH
Confidence 334445 79999999994 5543
No 29
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=43.71 E-value=28 Score=31.44 Aligned_cols=18 Identities=17% Similarity=0.541 Sum_probs=13.9
Q ss_pred HhCCCCeEEEEccCCcCCh
Q 025519 186 VQLNISRVMIIDLDAHQGN 204 (251)
Q Consensus 186 ~~~~~~rV~IiD~DvHhGn 204 (251)
.+.| +||++||+|....+
T Consensus 29 a~~g-~kVLliD~D~q~~~ 46 (295)
T PRK13234 29 VEMG-QKILIVGCDPKADS 46 (295)
T ss_pred HHCC-CeEEEEeccccccc
Confidence 3445 79999999998655
No 30
>PF02701 zf-Dof: Dof domain, zinc finger; InterPro: IPR003851 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry consists of proteins containing a Dof domain, which is a zinc finger DNA-binding domain that shows resemblance to the Cys2 zinc finger, although it has a longer putative loop where an extra Cys residue is conserved []. AOBP, a DNA-binding protein in pumpkin (Cucurbita maxima), contains a 52 amino acid Dof domain, which is highly conserved in several DNA-binding proteins of higher plants. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent
Probab=42.87 E-value=8.1 Score=27.09 Aligned_cols=10 Identities=30% Similarity=0.800 Sum_probs=7.7
Q ss_pred CCccccccHH
Q 025519 169 GGFCAYADIS 178 (251)
Q Consensus 169 ~GFC~fNnvA 178 (251)
.-||||||--
T Consensus 16 TKFcYyNNy~ 25 (63)
T PF02701_consen 16 TKFCYYNNYN 25 (63)
T ss_pred CEEEeecCCC
Confidence 4599999853
No 31
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=42.83 E-value=26 Score=31.04 Aligned_cols=24 Identities=13% Similarity=0.325 Sum_probs=16.3
Q ss_pred HHHHhCCCCeEEEEccCCcCChhhhH
Q 025519 183 YAFVQLNISRVMIIDLDAHQGNGHEK 208 (251)
Q Consensus 183 ~l~~~~~~~rV~IiD~DvHhGnGtq~ 208 (251)
+++.+.| +||++||+|.. ||=|+.
T Consensus 23 ~~La~~G-~rVLliD~Dpq-~n~t~~ 46 (279)
T PRK13230 23 AALAESG-KKVLVVGCDPK-ADCTRN 46 (279)
T ss_pred HHHHhCC-CEEEEEeeCCc-cccccc
Confidence 3344555 69999999995 554544
No 32
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=42.09 E-value=25 Score=31.08 Aligned_cols=21 Identities=14% Similarity=0.430 Sum_probs=14.6
Q ss_pred HHHHhCCCCeEEEEccCCcCCh
Q 025519 183 YAFVQLNISRVMIIDLDAHQGN 204 (251)
Q Consensus 183 ~l~~~~~~~rV~IiD~DvHhGn 204 (251)
+++.+.| +||++||+|....+
T Consensus 23 ~~La~~G-~rVLlID~Dpq~~~ 43 (274)
T PRK13235 23 AGLAEMG-KKVMVVGCDPKADS 43 (274)
T ss_pred HHHHHCC-CcEEEEecCCcccc
Confidence 3344455 79999999986543
No 33
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=39.36 E-value=33 Score=29.82 Aligned_cols=49 Identities=22% Similarity=0.249 Sum_probs=36.1
Q ss_pred cCceeecCCCCCCCCCCCCCCccccccHHHHHHHHHHhCCCCeEEEEccCCc-CChh
Q 025519 150 RGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAH-QGNG 205 (251)
Q Consensus 150 ~~~a~~~~~G~HHA~~~~~~GFC~fNnvAiAa~~l~~~~~~~rV~IiD~DvH-hGnG 205 (251)
+|.|+..-.| ++....|+..|.+=.|+.+ ...|++++.|+|+|.= .|.+
T Consensus 10 ~G~~Vr~~~G------~~~~~~~~~~dP~~~a~~~-~~~g~~~l~ivDLdaa~~g~~ 59 (229)
T PF00977_consen 10 NGRVVRLVKG------DRFSETVYSGDPVEVAKAF-NEQGADELHIVDLDAAKEGRG 59 (229)
T ss_dssp TTEEEEESTT------CCSCEECECCCHHHHHHHH-HHTT-SEEEEEEHHHHCCTHH
T ss_pred CCEEEECCCe------ecceeeEECcCHHHHHHHH-HHcCCCEEEEEEccCcccCch
Confidence 5666655556 4467789999988888877 5678999999999965 3655
No 34
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=39.25 E-value=36 Score=29.92 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=11.9
Q ss_pred CeEEEEccCCcCCh
Q 025519 191 SRVMIIDLDAHQGN 204 (251)
Q Consensus 191 ~rV~IiD~DvHhGn 204 (251)
+||++||+|.+..+
T Consensus 32 ~rvLliD~Dpq~~~ 45 (275)
T PRK13233 32 KKVFIHGCDPKADS 45 (275)
T ss_pred CeEEEeccCcCcCh
Confidence 79999999998644
No 35
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=38.63 E-value=35 Score=27.67 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=11.8
Q ss_pred hCCCCeEEEEccCCcC
Q 025519 187 QLNISRVMIIDLDAHQ 202 (251)
Q Consensus 187 ~~~~~rV~IiD~DvHh 202 (251)
+.| +||++||.|.-.
T Consensus 26 ~~g-~~vllvD~D~q~ 40 (169)
T cd02037 26 KLG-YKVGLLDADIYG 40 (169)
T ss_pred HcC-CcEEEEeCCCCC
Confidence 444 799999999844
No 36
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=37.37 E-value=42 Score=28.03 Aligned_cols=16 Identities=25% Similarity=0.383 Sum_probs=12.2
Q ss_pred hCCCCeEEEEccCCcCC
Q 025519 187 QLNISRVMIIDLDAHQG 203 (251)
Q Consensus 187 ~~~~~rV~IiD~DvHhG 203 (251)
+.| +||++||+|....
T Consensus 44 ~~G-~rVllID~D~~~~ 59 (204)
T TIGR01007 44 QAG-YKTLLIDGDMRNS 59 (204)
T ss_pred hCC-CeEEEEeCCCCCh
Confidence 344 7999999998653
No 37
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=34.72 E-value=1.2e+02 Score=22.73 Aligned_cols=45 Identities=13% Similarity=-0.020 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhCCCCeEEEEccCCcCChhhhHhhhCCCCEEEEeecC
Q 025519 177 ISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFN 223 (251)
Q Consensus 177 vAiAa~~l~~~~~~~rV~IiD~DvHhGnGtq~if~~d~~Vl~iSiH~ 223 (251)
+.+.+.++++ .|. .|-++|.+++..+-.+.+-..+|+++.+|.+.
T Consensus 17 l~~la~~l~~-~G~-~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~ 61 (121)
T PF02310_consen 17 LLYLAAYLRK-AGH-EVDILDANVPPEELVEALRAERPDVVGISVSM 61 (121)
T ss_dssp HHHHHHHHHH-TTB-EEEEEESSB-HHHHHHHHHHTTCSEEEEEESS
T ss_pred HHHHHHHHHH-CCC-eEEEECCCCCHHHHHHHHhcCCCcEEEEEccC
Confidence 3444555554 464 89999999999888888888999999999854
No 38
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=34.55 E-value=49 Score=29.08 Aligned_cols=17 Identities=24% Similarity=0.429 Sum_probs=13.2
Q ss_pred hCCCCeEEEEccCCcCCh
Q 025519 187 QLNISRVMIIDLDAHQGN 204 (251)
Q Consensus 187 ~~~~~rV~IiD~DvHhGn 204 (251)
+.| +||++||+|....+
T Consensus 130 ~~g-~~VllID~D~~~~~ 146 (274)
T TIGR03029 130 QLG-EKTLLIDANLRDPV 146 (274)
T ss_pred hcC-CeEEEEeCCCCCcc
Confidence 344 79999999987654
No 39
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=34.42 E-value=88 Score=27.07 Aligned_cols=36 Identities=17% Similarity=0.088 Sum_probs=28.6
Q ss_pred ccccccHHHHHHHHHHhCCCCeEEEEccCCcCChhhh
Q 025519 171 FCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHE 207 (251)
Q Consensus 171 FC~fNnvAiAa~~l~~~~~~~rV~IiD~DvHhGnGtq 207 (251)
.|+..|..-.|+++. +.|++++-|+|+|..-|.+.+
T Consensus 32 ~~~~~dP~~~a~~~~-~~g~~~l~ivDLd~~~~~~~n 67 (221)
T TIGR00734 32 SRLSSSPDDAAKVIE-EIGARFIYIADLDRIVGLGDN 67 (221)
T ss_pred eecCCCHHHHHHHHH-HcCCCEEEEEEcccccCCcch
Confidence 588888777777765 568999999999998766543
No 40
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=34.05 E-value=51 Score=27.81 Aligned_cols=14 Identities=29% Similarity=0.508 Sum_probs=12.2
Q ss_pred CeEEEEccCCcCCh
Q 025519 191 SRVMIIDLDAHQGN 204 (251)
Q Consensus 191 ~rV~IiD~DvHhGn 204 (251)
+||++||.|.+.++
T Consensus 66 ~~VLlvD~D~~~~~ 79 (207)
T TIGR03018 66 KTVLLIDADLRRPS 79 (207)
T ss_pred CeEEEEECCCCChh
Confidence 79999999998754
No 41
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=33.73 E-value=51 Score=30.88 Aligned_cols=19 Identities=37% Similarity=0.387 Sum_probs=14.3
Q ss_pred hCCCCeEEEEccCCcCChhhh
Q 025519 187 QLNISRVMIIDLDAHQGNGHE 207 (251)
Q Consensus 187 ~~~~~rV~IiD~DvHhGnGtq 207 (251)
+.| +||++||+|. +||=++
T Consensus 131 ~~G-~rVLlID~Dp-Q~~ls~ 149 (387)
T TIGR03453 131 LRG-YRVLAIDLDP-QASLSA 149 (387)
T ss_pred hcC-CCEEEEecCC-CCCHHH
Confidence 345 7999999997 677554
No 42
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=33.43 E-value=44 Score=30.11 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=12.8
Q ss_pred HHHhCCCCeEEEEccCCc
Q 025519 184 AFVQLNISRVMIIDLDAH 201 (251)
Q Consensus 184 l~~~~~~~rV~IiD~DvH 201 (251)
++.+.| +||++||+|-.
T Consensus 23 ~La~~G-~rVLlID~DpQ 39 (290)
T CHL00072 23 ALARRG-KKVLQIGCDPK 39 (290)
T ss_pred HHHHCC-CeEEEEeccCC
Confidence 344555 69999999976
No 43
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=32.79 E-value=46 Score=29.12 Aligned_cols=17 Identities=18% Similarity=0.331 Sum_probs=12.4
Q ss_pred HhCCCCeEEEEccCCcCCh
Q 025519 186 VQLNISRVMIIDLDAHQGN 204 (251)
Q Consensus 186 ~~~~~~rV~IiD~DvHhGn 204 (251)
.+.| +||++||.|- +||
T Consensus 25 a~~G-~rvlliD~Dp-q~~ 41 (267)
T cd02032 25 AKRG-KKVLQIGCDP-KHD 41 (267)
T ss_pred HHCC-CcEEEEecCC-CCC
Confidence 3445 7999999996 344
No 44
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=32.68 E-value=80 Score=27.47 Aligned_cols=55 Identities=22% Similarity=0.200 Sum_probs=36.0
Q ss_pred cCceeecCCCCCCCCCCCCCCccccccHHHHHHHHHHhCCCCeEEEEccCCcCChh
Q 025519 150 RGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNG 205 (251)
Q Consensus 150 ~~~a~~~~~G~HHA~~~~~~GFC~fNnvAiAa~~l~~~~~~~rV~IiD~DvHhGnG 205 (251)
+|.++..-.|--.-...-.+.||+..|..-.|+.+.++ |.+++.|+|+|.--|.+
T Consensus 10 ~G~~V~~~~G~~~~~~p~~~~~~~~~dp~~~a~~~~~~-g~~~l~i~DLd~~~~~~ 64 (233)
T cd04723 10 DGVVVHGVGGDRDNYRPITSNLCSTSDPLDVARAYKEL-GFRGLYIADLDAIMGRG 64 (233)
T ss_pred CCEEEEeeccChhhccccccCcccCCCHHHHHHHHHHC-CCCEEEEEeCccccCCC
Confidence 55555554441111111136789888887777777655 89999999999865544
No 45
>PF13050 DUF3911: Protein of unknown function (DUF3911)
Probab=32.48 E-value=18 Score=25.66 Aligned_cols=11 Identities=27% Similarity=0.842 Sum_probs=8.5
Q ss_pred CCCccccccHH
Q 025519 168 GGGFCAYADIS 178 (251)
Q Consensus 168 ~~GFC~fNnvA 178 (251)
.-|||-|||-+
T Consensus 25 tkgfckf~nyv 35 (77)
T PF13050_consen 25 TKGFCKFNNYV 35 (77)
T ss_pred cccccccCCEE
Confidence 35899999853
No 46
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=31.47 E-value=55 Score=29.69 Aligned_cols=14 Identities=29% Similarity=0.596 Sum_probs=11.7
Q ss_pred CeEEEEccCCcCCh
Q 025519 191 SRVMIIDLDAHQGN 204 (251)
Q Consensus 191 ~rV~IiD~DvHhGn 204 (251)
+||++||.|...|+
T Consensus 123 ~~VlLvD~D~~~~~ 136 (322)
T TIGR03815 123 LRTLLVDADPWGGG 136 (322)
T ss_pred CCEEEEecCCCCCC
Confidence 79999999977653
No 47
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=31.09 E-value=49 Score=30.67 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=14.9
Q ss_pred CeEEEEccCCcCChhhhHhhh
Q 025519 191 SRVMIIDLDAHQGNGHEKDFS 211 (251)
Q Consensus 191 ~rV~IiD~DvHhGnGtq~if~ 211 (251)
+||++||.|.++++ +...|.
T Consensus 60 ~rVllid~D~~~~~-~~~~~g 79 (329)
T cd02033 60 KRVLLIGCDPKSDT-TSLLFG 79 (329)
T ss_pred CcEEEEEeeecccc-cchhcc
Confidence 79999999999754 444443
No 48
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=30.27 E-value=54 Score=29.15 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhCCCCeEEEEccCC
Q 025519 177 ISLCIHYAFVQLNISRVMIIDLDA 200 (251)
Q Consensus 177 vAiAa~~l~~~~~~~rV~IiD~Dv 200 (251)
++.+.-+++.+.| ++|++||+|.
T Consensus 18 ltAnLA~aL~~~G-~~VlaID~dp 40 (243)
T PF06564_consen 18 LTANLAWALARLG-ESVLAIDLDP 40 (243)
T ss_pred HHHHHHHHHHHCC-CcEEEEeCCc
Confidence 3444455666666 7999999993
No 49
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=28.68 E-value=41 Score=29.42 Aligned_cols=15 Identities=27% Similarity=0.538 Sum_probs=11.6
Q ss_pred HHhCCCCeEEEEccCCc
Q 025519 185 FVQLNISRVMIIDLDAH 201 (251)
Q Consensus 185 ~~~~~~~rV~IiD~DvH 201 (251)
+.+.| ||++||+|..
T Consensus 26 La~~G--rVLliD~Dpq 40 (264)
T PRK13231 26 YSNDH--RVLVIGCDPK 40 (264)
T ss_pred cCCCC--EEEEEeEccC
Confidence 33456 8999999976
No 50
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=28.46 E-value=1e+02 Score=26.93 Aligned_cols=46 Identities=15% Similarity=0.121 Sum_probs=30.0
Q ss_pred cCceeecCCCCCCCCCCCCCCccccc-cHHHHHHHHHHhCCCCeEEEEccCCcC
Q 025519 150 RGWAINVGGGFHHCSADEGGGFCAYA-DISLCIHYAFVQLNISRVMIIDLDAHQ 202 (251)
Q Consensus 150 ~~~a~~~~~G~HHA~~~~~~GFC~fN-nvAiAa~~l~~~~~~~rV~IiD~DvHh 202 (251)
+|.|+..-.| ....+-.++ |..=.|+++.+..|.+++.|+|+|.=-
T Consensus 12 ~G~~Vr~~~G-------~~~~~~~~~~dp~~~a~~~~~~~Ga~~l~ivDLd~a~ 58 (234)
T PRK13587 12 GSTSVRLTEG-------KYDSEEKMSRSAEESIAYYSQFECVNRIHIVDLIGAK 58 (234)
T ss_pred CCEEEEcCcc-------cCCCceEeCCCHHHHHHHHHhccCCCEEEEEECcccc
Confidence 5666655444 333345554 655566666655689999999999864
No 51
>PRK11670 antiporter inner membrane protein; Provisional
Probab=27.81 E-value=69 Score=30.07 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=15.9
Q ss_pred HHhCCCCeEEEEccCCcCChhhhHhh
Q 025519 185 FVQLNISRVMIIDLDAHQGNGHEKDF 210 (251)
Q Consensus 185 ~~~~~~~rV~IiD~DvHhGnGtq~if 210 (251)
+.+.| +||++||+|....+ +..+|
T Consensus 132 LA~~G-~rVlLID~D~qgps-~~~~l 155 (369)
T PRK11670 132 LAAEG-AKVGILDADIYGPS-IPTML 155 (369)
T ss_pred HHHCC-CcEEEEeCCCCCCC-cchhc
Confidence 33445 69999999996643 33444
No 52
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=27.44 E-value=75 Score=30.17 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=16.1
Q ss_pred HHhCCCCeEEEEccCCcCChhhhH
Q 025519 185 FVQLNISRVMIIDLDAHQGNGHEK 208 (251)
Q Consensus 185 ~~~~~~~rV~IiD~DvHhGnGtq~ 208 (251)
+.+.| .||++||+|-. ||-|..
T Consensus 146 LA~~G-~rVLlIDlDpQ-~~lt~~ 167 (405)
T PRK13869 146 LALQG-YRVLAVDLDPQ-ASLSAL 167 (405)
T ss_pred HHhcC-CceEEEcCCCC-CCHHHH
Confidence 33445 79999999995 776653
No 53
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=27.36 E-value=67 Score=25.99 Aligned_cols=13 Identities=38% Similarity=0.667 Sum_probs=9.9
Q ss_pred CCeEEEEccCCcC
Q 025519 190 ISRVMIIDLDAHQ 202 (251)
Q Consensus 190 ~~rV~IiD~DvHh 202 (251)
-+||++||+|.--
T Consensus 27 g~~VlliD~D~~~ 39 (195)
T PF01656_consen 27 GKKVLLIDLDPQA 39 (195)
T ss_dssp TS-EEEEEESTTS
T ss_pred cccccccccCccc
Confidence 3899999999854
No 54
>PRK10175 lipoprotein; Provisional
Probab=27.14 E-value=64 Score=23.51 Aligned_cols=10 Identities=30% Similarity=0.464 Sum_probs=6.1
Q ss_pred CCCeEEEEcc
Q 025519 189 NISRVMIIDL 198 (251)
Q Consensus 189 ~~~rV~IiD~ 198 (251)
+.+-++|||+
T Consensus 45 ~w~~l~ilDL 54 (75)
T PRK10175 45 AWRYITILDL 54 (75)
T ss_pred CCceEEEEec
Confidence 3445777774
No 55
>PF00220 Hormone_4: Neurohypophysial hormones, N-terminal Domain; InterPro: IPR022423 Oxytocin (or ocytocin) and vasopressin [] are small (nine amino acid residues), structurally and functionally related neurohypophysial peptide hormones. Oxytocin causes contraction of the smooth muscle of the uterus and of the mammary gland while vasopressin has a direct antidiuretic action on the kidney and also causes vasoconstriction of the peripheral vessels. Like the majority of active peptides, both hormones are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Peptides belonging to this family are also found in birds, fish, reptiles and amphibians (mesotocin, isotocin, valitocin, glumitocin, aspargtocin, vasotocin, seritocin, asvatocin, phasvatocin), in worms (annetocin), octopi (cephalotocin), locust (locupressin or neuropeptide F1/F2) and in molluscs (conopressins G and S) []. The pattern developed to detect this category of peptides spans their entire sequence and includes four invariant amino acid residues. .; GO: 0005185 neurohypophyseal hormone activity, 0005576 extracellular region
Probab=27.03 E-value=20 Score=15.63 Aligned_cols=6 Identities=17% Similarity=0.506 Sum_probs=4.4
Q ss_pred cccccH
Q 025519 172 CAYADI 177 (251)
Q Consensus 172 C~fNnv 177 (251)
|+++|+
T Consensus 1 C~i~nC 6 (9)
T PF00220_consen 1 CYIRNC 6 (9)
T ss_pred CccccC
Confidence 777775
No 56
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=27.01 E-value=67 Score=27.97 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=13.7
Q ss_pred hCCCCeEEEEccCCcCChhhh
Q 025519 187 QLNISRVMIIDLDAHQGNGHE 207 (251)
Q Consensus 187 ~~~~~rV~IiD~DvHhGnGtq 207 (251)
+.| +||++||.|- +|+-+.
T Consensus 28 ~~G-~~VlliD~Dp-Q~s~~~ 46 (231)
T PRK13849 28 SDG-KRVALFEADE-NRPLTR 46 (231)
T ss_pred hCC-CcEEEEeCCC-CCCHHH
Confidence 444 6999999996 565444
No 57
>cd00525 AE_Prim_S_like AE_Prim_S_like: primase domain similar to that found in the small subunit of archaeal and eukaryotic (A/E) DNA primases. The replication machineries of A/Es are distinct from that of bacteria. Primases are DNA-dependent RNA polymerases which synthesis the short RNA primers required for DNA replication. In eukaryotes, this small catalytically active primase subunit (p50) and a larger primase subunit (p60), referred to jointly as the core primase, associate with the B subunit and the DNA polymerase alpha subunit in a complex, called Pol alpha-pri. In addition to its catalytic role in replication, eukaryotic DNA primase may play a role in coupling replication to DNA damage repair and in checkpoint control during S phase. Pfu41 and Pfu46 comprise the primase complex of the archaea Pyrococcus furiosus; these proteins have sequence identity to the eukaryotic p50 and p60 primase proteins respectively. Pfu41 preferentially uses dNTPs as substrate. Pfu46 regulates the pri
Probab=25.28 E-value=52 Score=25.54 Aligned_cols=13 Identities=23% Similarity=0.509 Sum_probs=11.8
Q ss_pred CeEEEEccCCcCC
Q 025519 191 SRVMIIDLDAHQG 203 (251)
Q Consensus 191 ~rV~IiD~DvHhG 203 (251)
..++|||+|.+++
T Consensus 54 ~~~iv~DiD~~~~ 66 (136)
T cd00525 54 PDLLVFDLDPDDY 66 (136)
T ss_pred CCEEEEECCCCCC
Confidence 5899999999996
No 58
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=24.11 E-value=91 Score=27.38 Aligned_cols=24 Identities=13% Similarity=0.425 Sum_probs=18.3
Q ss_pred hCCCCeEEEEccCCcCChhhhHhhhCC
Q 025519 187 QLNISRVMIIDLDAHQGNGHEKDFSSD 213 (251)
Q Consensus 187 ~~~~~rV~IiD~DvHhGnGtq~if~~d 213 (251)
+.| +||++||+|-.| ...++|..+
T Consensus 26 ~~g-~~vLlvd~D~~~--sl~~~~~~~ 49 (254)
T cd00550 26 EQG-KKVLLVSTDPAH--SLSDSFNQE 49 (254)
T ss_pred HCC-CCceEEeCCCcc--cHHHHhCCc
Confidence 344 899999999976 677777654
No 59
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=23.30 E-value=98 Score=27.59 Aligned_cols=14 Identities=29% Similarity=0.536 Sum_probs=12.1
Q ss_pred CeEEEEccCCcCCh
Q 025519 191 SRVMIIDLDAHQGN 204 (251)
Q Consensus 191 ~rV~IiD~DvHhGn 204 (251)
+||++||.|.+...
T Consensus 87 ~rVlliDaD~~gps 100 (265)
T COG0489 87 KRVLLLDADLRGPS 100 (265)
T ss_pred CcEEEEeCcCCCCc
Confidence 89999999998653
No 60
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=22.56 E-value=1.1e+02 Score=26.38 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=16.4
Q ss_pred CeEEEEccCCcCChhhhHhhhC
Q 025519 191 SRVMIIDLDAHQGNGHEKDFSS 212 (251)
Q Consensus 191 ~rV~IiD~DvHhGnGtq~if~~ 212 (251)
+||+.||+|-- |+-|......
T Consensus 33 ~kVLliDlDpQ-~s~t~~~~~~ 53 (259)
T COG1192 33 KKVLLIDLDPQ-GSLTSWLGLR 53 (259)
T ss_pred CcEEEEeCCCc-chhhHhcCCC
Confidence 89999999998 7766665443
No 61
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=22.17 E-value=1.5e+02 Score=26.11 Aligned_cols=41 Identities=7% Similarity=0.058 Sum_probs=29.8
Q ss_pred CCCCCccccccHHHHHHHHHHhCCCCeEEEEccCC-cCChhhh
Q 025519 166 DEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDA-HQGNGHE 207 (251)
Q Consensus 166 ~~~~GFC~fNnvAiAa~~l~~~~~~~rV~IiD~Dv-HhGnGtq 207 (251)
++...-|+..|..-.|+.+.+ +|.+++.|+|+|. --|.+..
T Consensus 21 ~~~~~~~~~~dP~~~A~~~~~-~ga~~lhivDLd~a~~g~~~n 62 (241)
T PRK14114 21 KKENTIFYEKDPAELVEKLIE-EGFTLIHVVDLSKAIENSVEN 62 (241)
T ss_pred ccCcceEECCCHHHHHHHHHH-CCCCEEEEEECCCcccCCcch
Confidence 344455777787777777765 7899999999996 4576644
No 62
>PRK02888 nitrous-oxide reductase; Validated
Probab=21.12 E-value=94 Score=31.58 Aligned_cols=64 Identities=20% Similarity=0.177 Sum_probs=43.9
Q ss_pred CCCCCCCCCCC-----ccccccHHHHHHHHHHhCCCCeEEEEccCCcCChhhhHhhhCCCCEEEE----eecCCC-C-CC
Q 025519 160 FHHCSADEGGG-----FCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYIL----DMFNPG-I-YP 228 (251)
Q Consensus 160 ~HHA~~~~~~G-----FC~fNnvAiAa~~l~~~~~~~rV~IiD~DvHhGnGtq~if~~d~~Vl~i----SiH~~~-~-yP 228 (251)
.||-.-..-.| |.++||- --.||+.||+|+ |.-| +|+-+ ++|+.. . ||
T Consensus 127 ~HHp~~s~t~g~ydGr~~findk-----------~n~Rvari~l~~---------~~~~-~i~~iPn~~~~Hg~~~~~~p 185 (635)
T PRK02888 127 THHPHMSFTDGTYDGRYLFINDK-----------ANTRVARIRLDV---------MKCD-KITELPNVQGIHGLRPQKIP 185 (635)
T ss_pred cCCCcccccCCccceeEEEEecC-----------CCcceEEEECcc---------Eeec-eeEeCCCccCccccCccccC
Confidence 49988776666 9999963 147999999997 6665 35544 577643 2 78
Q ss_pred CCcccCCceeeeccCC
Q 025519 229 RDYEARRFIDQKVEVV 244 (251)
Q Consensus 229 ~tg~~~~~~~~~vpl~ 244 (251)
.|+..-..-...|||+
T Consensus 186 ~t~yv~~~~e~~~Plp 201 (635)
T PRK02888 186 RTGYVFCNGEFRIPLP 201 (635)
T ss_pred CccEEEeCcccccccC
Confidence 8886532234567777
No 63
>PRK09822 lipopolysaccharide core biosynthesis protein; Provisional
Probab=21.10 E-value=1.3e+02 Score=26.82 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=39.6
Q ss_pred CCCCCCccccccHHHHHHHHHHhCCCCeEEEEccCCcCChhhhHhhhCCC
Q 025519 165 ADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDS 214 (251)
Q Consensus 165 ~~~~~GFC~fNnvAiAa~~l~~~~~~~rV~IiD~DvHhGnGtq~if~~d~ 214 (251)
.|-..|||-.--||-.|..+.-..|.++|.+.-+|.-. .+--||+++
T Consensus 160 kDI~~G~fDagTVaY~ALQIaY~LGF~~I~iaGLDMnN---s~PRFYEt~ 206 (269)
T PRK09822 160 KDISIGYCSCHTIAYTAIQVAYSLKYGRIICSGLDLTG---SCPRFYDES 206 (269)
T ss_pred eccccCeeeccchHHHHHHHHHHcCCCEEEEEeeccCC---CCCccccCC
Confidence 35567999999999999888888899999999998865 488899875
No 64
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=20.95 E-value=1.3e+02 Score=27.69 Aligned_cols=36 Identities=25% Similarity=0.296 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhCCCCeEEEEccCCcCChhhhHhhhC
Q 025519 177 ISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSS 212 (251)
Q Consensus 177 vAiAa~~l~~~~~~~rV~IiD~DvHhGnGtq~if~~ 212 (251)
.+.++.|+.++.+.+||+||+-|.=.|.|..+.|..
T Consensus 135 ~~~~~~~l~~~~~~k~v~ii~~~~~yg~~~~~~~~~ 170 (366)
T COG0683 135 AAAAADYLVKKGGKKRVAIIGDDYAYGEGLADAFKA 170 (366)
T ss_pred HHHHHHHHHHhcCCcEEEEEeCCCCcchhHHHHHHH
Confidence 345668888887767999999999999999998874
No 65
>PRK11519 tyrosine kinase; Provisional
Probab=20.91 E-value=1.4e+02 Score=30.58 Aligned_cols=14 Identities=43% Similarity=0.769 Sum_probs=12.4
Q ss_pred CeEEEEccCCcCCh
Q 025519 191 SRVMIIDLDAHQGN 204 (251)
Q Consensus 191 ~rV~IiD~DvHhGn 204 (251)
+||++||+|.+.+.
T Consensus 556 ~rvLlID~Dlr~~~ 569 (719)
T PRK11519 556 KRVLLIDCDMRKGY 569 (719)
T ss_pred CcEEEEeCCCCCCc
Confidence 89999999998764
No 66
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=20.67 E-value=2.1e+02 Score=26.68 Aligned_cols=44 Identities=18% Similarity=0.333 Sum_probs=34.3
Q ss_pred HHHHHHHhCCCCeEEEEc--cCCcCC-----hhhhHhhhCCCCEEEEeecC
Q 025519 180 CIHYAFVQLNISRVMIID--LDAHQG-----NGHEKDFSSDSRVYILDMFN 223 (251)
Q Consensus 180 Aa~~l~~~~~~~rV~IiD--~DvHhG-----nGtq~if~~d~~Vl~iSiH~ 223 (251)
|+..+..+.+.++|.||| ++++.. +.+-+.+..|++|+.||-+.
T Consensus 88 aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~N 138 (334)
T cd02514 88 ALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAWN 138 (334)
T ss_pred HHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEeec
Confidence 666666665678999995 555666 77888889999999999874
No 67
>KOG0693 consensus Myo-inositol-1-phosphate synthase [Lipid transport and metabolism]
Probab=20.51 E-value=93 Score=29.61 Aligned_cols=54 Identities=26% Similarity=0.351 Sum_probs=38.2
Q ss_pred CCCCcHHHHHhhhhhccccccC----C-CCCceeEEECcccCcccCCCCCCCCCCchHH
Q 025519 8 SVTTDAETLKRNRILSSKLYFD----I-PIFKLPLIYSPDYDISFLGIEKLHPFDSSKW 61 (251)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~----~-p~~~~~~vy~~~~~~h~~~~~~~Hpe~p~R~ 61 (251)
+..-+.|+-+|++++-.++|++ | +-.+.+=+|+|+|--.+.+-...|-.+-.|.
T Consensus 145 s~~nL~eAM~RakVld~~LQ~ql~p~me~~~PlPsIy~PdFIAaNQ~~RAnnvI~g~~k 203 (512)
T KOG0693|consen 145 SDMNLAEAMARAKVLDIDLQKQLRPFMENLVPLPSIYDPDFIAANQGSRANNVIKGTKK 203 (512)
T ss_pred CCCcHHHHHhhhhccCHHHHHHHHHHHhhccCCCcccCcchhhcCccccccccccCchH
Confidence 4567899999999988777643 2 2345677999999766555445677666654
No 68
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=20.32 E-value=1.2e+02 Score=31.00 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=13.9
Q ss_pred CeEEEEccCCcCChhhh
Q 025519 191 SRVMIIDLDAHQGNGHE 207 (251)
Q Consensus 191 ~rV~IiD~DvHhGnGtq 207 (251)
+||++||+|.+.++-+.
T Consensus 576 ~rvLlID~D~~~~~l~~ 592 (754)
T TIGR01005 576 KRALLIDADGRKAALSQ 592 (754)
T ss_pred CeEEEEeCCCCchhHHH
Confidence 79999999999775443
No 69
>KOG3457 consensus Sec61 protein translocation complex, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=20.09 E-value=1.7e+02 Score=21.89 Aligned_cols=21 Identities=33% Similarity=0.366 Sum_probs=11.5
Q ss_pred CCCCCCCCCCCcHHHHHhhhhh
Q 025519 1 MSSSSSPSVTTDAETLKRNRIL 22 (251)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (251)
||++.+|.+.. .-++||.|.+
T Consensus 2 ~s~~~~Pg~a~-~~~~~Rqrk~ 22 (88)
T KOG3457|consen 2 MSGSRAPGGAA-ATAGRRQRKS 22 (88)
T ss_pred CCCCCCCCchh-hHHHHHhccc
Confidence 78899994332 3334444443
Done!