Query 025519
Match_columns 251
No_of_seqs 144 out of 1364
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 11:58:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025519.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025519hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pqp_A HD7A, histone deacetyla 100.0 8.7E-66 3E-70 480.2 20.9 245 2-247 4-283 (421)
2 1zz1_A Histone deacetylase-lik 100.0 3.8E-65 1.3E-69 472.3 17.9 209 33-250 1-239 (369)
3 4a69_A Histone deacetylase 3,; 100.0 5.3E-64 1.8E-68 464.8 18.2 215 32-250 2-230 (376)
4 3max_A HD2, histone deacetylas 100.0 1.6E-63 5.6E-68 459.7 18.7 215 32-250 2-229 (367)
5 1c3p_A Protein (HDLP (histone 100.0 1.3E-63 4.6E-68 462.9 16.1 215 33-250 2-229 (375)
6 3ew8_A HD8, histone deacetylas 100.0 2.5E-62 8.7E-67 453.9 15.5 216 29-250 10-238 (388)
7 3q9b_A Acetylpolyamine amidohy 100.0 4.7E-62 1.6E-66 446.1 16.6 211 35-250 1-256 (341)
8 3men_A Acetylpolyamine aminohy 100.0 1.8E-61 6.1E-66 444.7 16.4 216 27-250 15-274 (362)
9 2vqm_A HD4, histone deacetylas 100.0 4.1E-61 1.4E-65 451.3 17.0 220 30-250 5-261 (413)
10 1cp2_A CP2, nitrogenase iron p 57.7 9.6 0.00033 31.7 4.1 22 187-210 27-48 (269)
11 3pg5_A Uncharacterized protein 54.5 11 0.00036 33.6 4.0 22 187-210 28-49 (361)
12 1g3q_A MIND ATPase, cell divis 54.1 11 0.00036 30.6 3.7 17 187-204 29-45 (237)
13 3ea0_A ATPase, para family; al 53.5 13 0.00045 30.2 4.2 18 191-208 35-52 (245)
14 1hyq_A MIND, cell division inh 53.4 11 0.00038 31.2 3.8 18 187-205 29-46 (263)
15 3q9l_A Septum site-determining 52.6 12 0.00039 30.8 3.8 20 187-207 29-48 (260)
16 2afh_E Nitrogenase iron protei 52.0 13 0.00044 31.4 4.1 22 187-210 28-49 (289)
17 1wcv_1 SOJ, segregation protei 51.3 14 0.00048 30.7 4.1 15 191-206 36-50 (257)
18 3kjh_A CO dehydrogenase/acetyl 50.1 12 0.00042 30.2 3.5 20 185-206 24-43 (254)
19 2xj4_A MIPZ; replication, cell 49.7 16 0.00054 31.1 4.3 21 187-208 31-51 (286)
20 3la6_A Tyrosine-protein kinase 43.5 18 0.0006 31.2 3.6 14 191-204 122-135 (286)
21 3end_A Light-independent proto 42.8 20 0.00068 30.5 3.8 20 187-208 67-86 (307)
22 2oze_A ORF delta'; para, walke 41.8 22 0.00075 30.0 3.9 20 187-208 63-82 (298)
23 3bfv_A CAPA1, CAPB2, membrane 40.1 23 0.00079 30.1 3.8 14 191-204 112-125 (271)
24 2ph1_A Nucleotide-binding prot 40.0 24 0.00081 29.4 3.8 18 187-205 45-62 (262)
25 4dzz_A Plasmid partitioning pr 39.8 47 0.0016 25.8 5.4 20 187-208 28-47 (206)
26 3fkq_A NTRC-like two-domain pr 39.4 24 0.00081 31.4 3.9 13 191-204 173-185 (373)
27 3ug7_A Arsenical pump-driving 38.7 50 0.0017 29.0 5.9 24 187-213 52-75 (349)
28 3cio_A ETK, tyrosine-protein k 37.7 30 0.001 29.8 4.2 15 191-205 134-148 (299)
29 3k9g_A PF-32 protein; ssgcid, 37.6 25 0.00087 29.1 3.6 18 191-209 56-73 (267)
30 3cwq_A Para family chromosome 35.2 31 0.0011 27.8 3.7 20 185-207 25-44 (209)
31 3zq6_A Putative arsenical pump 32.6 34 0.0012 29.7 3.7 20 191-212 43-62 (324)
32 3ez2_A Plasmid partition prote 30.1 41 0.0014 29.9 3.9 13 191-204 144-156 (398)
33 2h4a_A YRAM (HI1655); perplasm 27.3 18 0.00063 31.6 1.0 41 171-212 104-144 (325)
34 2woo_A ATPase GET3; tail-ancho 27.2 45 0.0015 29.0 3.5 22 187-211 45-66 (329)
35 3fwy_A Light-independent proto 26.4 39 0.0013 29.5 2.9 16 185-201 72-87 (314)
36 3ez9_A Para; DNA binding, wing 26.1 36 0.0012 30.3 2.8 13 191-204 147-159 (403)
37 2woj_A ATPase GET3; tail-ancho 24.7 48 0.0016 29.3 3.3 24 187-213 46-69 (354)
38 3iqw_A Tail-anchored protein t 22.8 1.2E+02 0.0041 26.5 5.5 23 187-212 42-64 (334)
No 1
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens} PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A* 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Probab=100.00 E-value=8.7e-66 Score=480.15 Aligned_cols=245 Identities=21% Similarity=0.269 Sum_probs=186.7
Q ss_pred CCCCCCCCCCcHHHHHhhhhhccccccCCCC-CceeEEECcccCcccCC--CCCCCCCCchHHHHHHHHHHHCCCCCCce
Q 025519 2 SSSSSPSVTTDAETLKRNRILSSKLYFDIPI-FKLPLIYSPDYDISFLG--IEKLHPFDSSKWGRICQFLSSEGFLDKNC 78 (251)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~vy~~~~~~h~~~--~~~~Hpe~p~R~~~i~~~L~~~gl~~~~~ 78 (251)
|||++|.|++.+|+.....++++.+.+..|. ++|+++||++|+.|.+. .+..|||+|+|+++|+++|++.|+++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~vyd~~~l~H~~~~~~~~~HPE~P~Rl~~i~~~L~~~Gl~~~~~ 83 (421)
T 2pqp_A 4 SSPAAPASLSAPEPASQARVLSSSETPARTLPFTTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCE 83 (421)
T ss_dssp -----------------------------CCTTCEEEECCGGGGGCCCTTCCTTSCSSCTHHHHHHHHHHHHTTCGGGSE
T ss_pred CCCCCccccCCCCCCccccccCCCCCCCCCCCCeEEEEECHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHhcCCcccCe
Confidence 7889999999999999999999998888884 89999999999999854 34689999999999999999999999999
Q ss_pred eecCCCCCHHHHhccCCHHHHHHHhcCCCcc-c-------------cc-cc--CCcccCCCccccc-ccHHHHHHHhcHH
Q 025519 79 IVEPLEASKEDLLVVHSESYLKSLQSSPNVS-I-------------II-EV--PPVALFPNCLVQR-KVLYPFRKQVGGT 140 (251)
Q Consensus 79 ~~~p~~as~~~L~~vHs~~Yv~~l~~~~~~~-~-------------~~-e~--~~~~~~~d~~~~~-~~~~~a~~a~G~~ 140 (251)
+++|++|+++||++||+++||+.+....... + .. .. ....++.|++++. .++++|++++|++
T Consensus 84 ~~~p~~At~eeL~~vHs~~YI~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~p~gg~~~D~Dt~~~~~~s~~aa~~aaG~~ 163 (421)
T 2pqp_A 84 CLRGRKASLEELQSVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSV 163 (421)
T ss_dssp EECCCCCCHHHHTTTSCHHHHHHHHCCTTCSCCCCHHHHHHHHSCCCCEECTTSCEESSSSCEECTTTHHHHHHHHHHHH
T ss_pred eeCCCCCCHHHHHhcCCHHHHHhhhcchhhhhhhhcccccccchhhhhhhccccCcCCCCCcccCCccHHHHHHHHHhHH
Confidence 9999999999999999999998654321100 0 00 01 1123567888874 8899999999999
Q ss_pred HHHHHHHHH----cCceeecCCCCCCCCCCCCCCccccccHHHHHHHHHHhCCCCeEEEEccCCcCChhhhHhhhCCCCE
Q 025519 141 ILAAKLAKE----RGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRV 216 (251)
Q Consensus 141 l~aa~~~~~----~~~a~~~~~G~HHA~~~~~~GFC~fNnvAiAa~~l~~~~~~~rV~IiD~DvHhGnGtq~if~~d~~V 216 (251)
+.|++.++. ++||++|||| |||++++++|||+|||+||||++|+++++++||+|||||||||||||+|||+||+|
T Consensus 164 ~~a~~~v~~g~~~~afa~~rPpG-HHA~~~~a~GFC~fNnvAiAa~~l~~~~~~~RV~ivD~DvHHGnGtq~iF~~dp~V 242 (421)
T 2pqp_A 164 TDLAFKVASRELKNGFAVVRPPG-HHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSV 242 (421)
T ss_dssp HHHHHHHHTTSSSEEEECCSSCC-TTCBTTBCBTTBSSCHHHHHHHHHHHHSTTCCEEEEECSSSCCHHHHHHHTTCTTE
T ss_pred HHHHHHHHcCccccceeeCCCCC-CCCCCCCCCcchhhCHHHHHHHHHHHhcCCCeEEEEecCCCCChhHHHHhcCCCCE
Confidence 999999974 5799999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCC---CCCCCCcccC-------CceeeeccCCCCC
Q 025519 217 YILDMFNP---GIYPRDYEAR-------RFIDQKVEVVVNN 247 (251)
Q Consensus 217 l~iSiH~~---~~yP~tg~~~-------~~~~~~vpl~~g~ 247 (251)
||+|+|+. +|||+||... +++|+||||+.|+
T Consensus 243 l~~S~H~~~~g~~yPgtG~~~e~G~g~g~g~~vNvPl~~gl 283 (421)
T 2pqp_A 243 LYISLHRHDDGNFFPGSGAVDEVGAGSGEGFNVNVAWAGGL 283 (421)
T ss_dssp EEEEEEECGGGTSTTCCCCTTCCCCGGGTTCEEEEEECSCS
T ss_pred EEEecccCCCCCCCCCCCChhhccCCCCccceeccccCCCC
Confidence 99999995 5999998653 4799999998663
No 2
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=100.00 E-value=3.8e-65 Score=472.34 Aligned_cols=209 Identities=20% Similarity=0.294 Sum_probs=191.8
Q ss_pred CceeEEECcccCcccCCCCCC----------------CCCCchHHHHHHHHHHHCCCCCCceeecCCCCCHHHHhccCCH
Q 025519 33 FKLPLIYSPDYDISFLGIEKL----------------HPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE 96 (251)
Q Consensus 33 ~~~~~vy~~~~~~h~~~~~~~----------------Hpe~p~R~~~i~~~L~~~gl~~~~~~~~p~~as~~~L~~vHs~ 96 (251)
|+|+++|||+|..|.++ .+ |||+|+|+++|.++|++.|+++.+++++|++|++++|++||++
T Consensus 1 m~t~~~y~~~~~~h~~~--~~~~~~~~~g~~~~~~~~Hpe~p~R~~~i~~~l~~~gl~~~~~~~~p~~a~~~~l~~vH~~ 78 (369)
T 1zz1_A 1 MAIGYVWNTLYGWVDTG--TGSLAAANLTARMQPISHHLAHPDTKRRFHELVCASGQIEHLTPIAAVAATDADILRAHSA 78 (369)
T ss_dssp -CEEEECCGGGGGCCCC--SSSSSCCBTTTTBCCCSSCTTCTHHHHHHHHHHHHTTGGGGSEECCCCCCCHHHHHTTSCH
T ss_pred CeEEEEEchHHcccCCC--CcccccccccccccccCCCCCCHHHHHHHHHHHHhcCCCccceEeCCCcCCHHHHHHhccH
Confidence 67999999999999765 44 9999999999999999999998899999999999999999999
Q ss_pred HHHHHHhcCCC-cccccccCCcccCC-CcccccccHHHHHHHhcHHHHHHHHHHH----cCceeecCCCCCCCCCCCCCC
Q 025519 97 SYLKSLQSSPN-VSIIIEVPPVALFP-NCLVQRKVLYPFRKQVGGTILAAKLAKE----RGWAINVGGGFHHCSADEGGG 170 (251)
Q Consensus 97 ~Yv~~l~~~~~-~~~~~e~~~~~~~~-d~~~~~~~~~~a~~a~G~~l~aa~~~~~----~~~a~~~~~G~HHA~~~~~~G 170 (251)
+||++|++.+. ... ..++. ||++++++++++++++|+++.|++.+++ ++||++|||| |||++++++|
T Consensus 79 ~Yv~~l~~~~~~~~~------~~l~~~dtp~~~~~~~~a~~aaG~~l~aa~~v~~g~~~~afa~~rppG-HHA~~~~a~G 151 (369)
T 1zz1_A 79 AHLENMKRVSNLPTG------GDTGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPG-HHAPHNAAMG 151 (369)
T ss_dssp HHHHHHHHHHHSTTC------EECSSSSCEECTTTHHHHHHHHHHHHHHHHHHHTTSCSEEEECCSSCC-TTCCTTCCBT
T ss_pred HHHHHHHHhCccccc------eecCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEecCCc-cCcCCCCCCC
Confidence 99999998654 211 23566 9999999999999999999999999986 4689999999 9999999999
Q ss_pred ccccccHHHHHHHHHHhCCCCeEEEEccCCcCChhhhHhhhCCCCEEEEeecCCCCCC-CCccc-------CCceeeecc
Q 025519 171 FCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYP-RDYEA-------RRFIDQKVE 242 (251)
Q Consensus 171 FC~fNnvAiAa~~l~~~~~~~rV~IiD~DvHhGnGtq~if~~d~~Vl~iSiH~~~~yP-~tg~~-------~~~~~~~vp 242 (251)
||+|||+||||++|++++|++||+|||||||||||||+|||+||+|||+|+|+.++|| +||.. ++++++|||
T Consensus 152 FC~fNnvAiAa~~l~~~~g~~RV~IvD~DvHHGnGTq~iF~~d~~Vl~~SiH~~~~yP~~tG~~~e~G~g~g~g~~vNvP 231 (369)
T 1zz1_A 152 FCIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHLCFPPDSGYSTERGAGNGHGYNINVP 231 (369)
T ss_dssp TBSSCHHHHHHHHHHHTSCCSCEEEEECSSSCCHHHHHHTTTCTTEEEEEEEETTSSSTTCCCTTCCCCGGGTTCEEEEE
T ss_pred chHhhHHHHHHHHHHHhcCCCeEEEEecCCCCchhhhHHhcCCCCEEEEeccCCCCCCCCCCcccccCCCCCCceEEeee
Confidence 9999999999999999999999999999999999999999999999999999999999 99865 247999999
Q ss_pred CCCCCCCC
Q 025519 243 VVVNNQYT 250 (251)
Q Consensus 243 l~~g~~d~ 250 (251)
||+|++|+
T Consensus 232 L~~g~~d~ 239 (369)
T 1zz1_A 232 LPPGSGNA 239 (369)
T ss_dssp ECTTCBHH
T ss_pred cCCCCCHH
Confidence 99999985
No 3
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.3e-64 Score=464.79 Aligned_cols=215 Identities=23% Similarity=0.365 Sum_probs=191.2
Q ss_pred CCceeEEECcccCcccCCCCCCCCCCchHHHHHHHHHHHCCCCCCceeecCCCCCHHHHhccCCHHHHHHHhcCCCcccc
Q 025519 32 IFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSII 111 (251)
Q Consensus 32 ~~~~~~vy~~~~~~h~~~~~~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~p~~as~~~L~~vHs~~Yv~~l~~~~~~~~~ 111 (251)
+.++.++|||+|..|.+ +.+|||+|+|+++|+++|++.|+++.+++++|++|++++|++||+++||++|++.+.....
T Consensus 2 ~~~~~~~y~~~~~~~~~--g~~HPe~p~Rl~~i~~~l~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~ 79 (376)
T 4a69_A 2 AKTVAYFYDPDVGNFHY--GAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQ 79 (376)
T ss_dssp CCCEEEECCTTTTCCCC--CTTCSCCTHHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHCCTTTGG
T ss_pred CCeEEEEEChHHhCcCC--CCCCCcCHHHHHHHHHHHHhcCCCCCceEeCCCCCCHHHHHHhCCHHHHHHHHHhCcccch
Confidence 35789999999999865 4789999999999999999999999999999999999999999999999999988763210
Q ss_pred ---cccCCcccCCCcccccccHHHHHHHhcHHHHHHHHHHHc--CceeecCCCCCCCCCCCCCCccccccHHHHHHHHHH
Q 025519 112 ---IEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER--GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFV 186 (251)
Q Consensus 112 ---~e~~~~~~~~d~~~~~~~~~~a~~a~G~~l~aa~~~~~~--~~a~~~~~G~HHA~~~~~~GFC~fNnvAiAa~~l~~ 186 (251)
.+.....+++||++++++++++++++||+|.|++.++++ ++|++++||+|||++++++|||+|||+||||++|++
T Consensus 80 ~~~~~~~~~~l~~Dtpv~~~~~e~a~~aaGgtl~Aa~~v~~g~~~~A~~~~gG~HHA~~~~a~GFC~~NdvAiAa~~l~~ 159 (376)
T 4a69_A 80 GFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLK 159 (376)
T ss_dssp GGHHHHHHHTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTT
T ss_pred hhhhhhceeccCCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCcceeeeCCCCCCcCCcCCCCcchhhhHHHHHHHHHHH
Confidence 011112357899999999999999999999999987653 489999999999999999999999999999999987
Q ss_pred hCCCCeEEEEccCCcCChhhhHhhhCCCCEEEEeecCCC--CCCCCccc-------CCceeeeccCCCCCCCC
Q 025519 187 QLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG--IYPRDYEA-------RRFIDQKVEVVVNNQYT 250 (251)
Q Consensus 187 ~~~~~rV~IiD~DvHhGnGtq~if~~d~~Vl~iSiH~~~--~yP~tg~~-------~~~~~~~vpl~~g~~d~ 250 (251)
+ .+||+|||||||||||||+|||+||+|||+|+|+.+ |||+||.. ++++++|||||+|++|+
T Consensus 160 ~--~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~fPgtG~~~e~G~g~g~g~~vNvPL~~G~~D~ 230 (376)
T 4a69_A 160 Y--HPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQ 230 (376)
T ss_dssp T--CSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECSTTCTTCCCCTTCCCCGGGTTSEEEEEECTTCBHH
T ss_pred h--CCcEEEEeccCCCCcchhhHhcCCCCEEEEecccCCCcCCCCCCCccccCCCCCCceeEeeecCCCCCHH
Confidence 6 499999999999999999999999999999999965 89999864 24799999999999985
No 4
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=100.00 E-value=1.6e-63 Score=459.65 Aligned_cols=215 Identities=24% Similarity=0.371 Sum_probs=191.9
Q ss_pred CCceeEEECcccCcccCCCCCCCCCCchHHHHHHHHHHHCCCCCCceeecCCCCCHHHHhccCCHHHHHHHhcCCCcccc
Q 025519 32 IFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSII 111 (251)
Q Consensus 32 ~~~~~~vy~~~~~~h~~~~~~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~p~~as~~~L~~vHs~~Yv~~l~~~~~~~~~ 111 (251)
+.++.++|||+|..|.+ +.+|||+|+|+++|.++|++.|+++.+++++|++|++++|++||+++||++|++.++....
T Consensus 2 ~~~v~~~y~~~~~~~~~--g~~HPe~P~Rl~~i~~~L~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~ 79 (367)
T 3max_A 2 KKKVCYYYDGDIGNYYY--GQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKYHSDEYIKFLRSIRPDNMS 79 (367)
T ss_dssp CCCEEEECCGGGGGCCC--CTTCSCCTHHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHCCGGGGG
T ss_pred CCeEEEEECccccCcCC--CCCCCCCHHHHHHHHHHHHhcCCcccCeeeCCCCCCHHHHHhhCCHHHHHHHHHhCccccc
Confidence 46789999999999975 4789999999999999999999999999999999999999999999999999988754311
Q ss_pred ---cccCCcccCCCcccccccHHHHHHHhcHHHHHHHHHHH--cCceeecCCCCCCCCCCCCCCccccccHHHHHHHHHH
Q 025519 112 ---IEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKE--RGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFV 186 (251)
Q Consensus 112 ---~e~~~~~~~~d~~~~~~~~~~a~~a~G~~l~aa~~~~~--~~~a~~~~~G~HHA~~~~~~GFC~fNnvAiAa~~l~~ 186 (251)
.+.....+++||++++++++++++++||+|.|++.+.+ .++|++|+||+|||++++++|||+|||+||||++|++
T Consensus 80 ~~~~~~~~~~l~~Dtp~~~~~~e~a~~aaGgsl~aa~~v~~~~~~~Ai~~pgG~HHA~~~~a~GFC~~NdvaiAa~~l~~ 159 (367)
T 3max_A 80 EYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLK 159 (367)
T ss_dssp GCHHHHHHTTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBCSCHHHHHHHHHTT
T ss_pred hhhhHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCcceEecCCCCCCcCCcCCCCCchhhhHHHHHHHHHHH
Confidence 00111245789999999999999999999999999864 4689999999999999999999999999999999987
Q ss_pred hCCCCeEEEEccCCcCChhhhHhhhCCCCEEEEeecCCC-CCCCCcccC-------CceeeeccCCCCCCCC
Q 025519 187 QLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG-IYPRDYEAR-------RFIDQKVEVVVNNQYT 250 (251)
Q Consensus 187 ~~~~~rV~IiD~DvHhGnGtq~if~~d~~Vl~iSiH~~~-~yP~tg~~~-------~~~~~~vpl~~g~~d~ 250 (251)
. .+||+|||||||||||||+|||+||+|||+|+|+.+ |||+||... +++++|||||+|++|+
T Consensus 160 ~--~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~fPgtg~~~e~G~g~g~g~~vNvPL~~g~~d~ 229 (367)
T 3max_A 160 Y--HQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDE 229 (367)
T ss_dssp T--CSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECSSCTTCCCCTTCCCCGGGTTCEEEEEECTTCCHH
T ss_pred c--CCcEEEEecCCCCCchhhHHhcCCCCEEEEecccCCCCCCCCCCccccCCCCCCceEEEEecCCCCCHH
Confidence 5 499999999999999999999999999999999975 999998642 4699999999999985
No 5
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*
Probab=100.00 E-value=1.3e-63 Score=462.87 Aligned_cols=215 Identities=21% Similarity=0.324 Sum_probs=189.0
Q ss_pred CceeEEECcccCcccCCCCCCCCCCchHHHHHHHHHHHCCCCCCceeecCCCCCHHHHhccCCHHHHHHHhcCCCccc--
Q 025519 33 FKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSI-- 110 (251)
Q Consensus 33 ~~~~~vy~~~~~~h~~~~~~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~p~~as~~~L~~vHs~~Yv~~l~~~~~~~~-- 110 (251)
++|+++|||+|..|.+ +.+|||+|+|+++|+++|++.|+++.+++++|++|++++|++||+++||++|++.+....
T Consensus 2 ~~t~~vy~~~~~~h~~--g~~Hpe~p~R~~~i~~~l~~~gl~~~~~~~~p~~at~~~l~~vH~~~Yv~~l~~~~~~~~~~ 79 (375)
T 1c3p_A 2 KKVKLIGTLDYGKYRY--PKNHPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFHTEDYINTLMEAERCQCVP 79 (375)
T ss_dssp CCEEEEECGGGGGSCC--CTTCGGGSCCHHHHHHHHHHTTCCCGGGEEECCCCCHHHHTTTSCHHHHHHHHHHHHHTSCC
T ss_pred ceEEEEECHHHcCCCC--CCCCCCCHHHHHHHHHHHHhcCCCCCCeEeCCCCCCHHHHHHhCCHHHHHHHHHhccccCCC
Confidence 3589999999999865 478999999999999999999999889999999999999999999999999987653210
Q ss_pred ccccCCccc-CCCcccccccHHHHHHHhcHHHHHHHHHHHcCceeecCCCCCCCCCCCCCCccccccHHHHHHHHHHhCC
Q 025519 111 IIEVPPVAL-FPNCLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLN 189 (251)
Q Consensus 111 ~~e~~~~~~-~~d~~~~~~~~~~a~~a~G~~l~aa~~~~~~~~a~~~~~G~HHA~~~~~~GFC~fNnvAiAa~~l~~~~~ 189 (251)
..+.....+ +.||++++++++++++++||++.|++.+++++.|+++|||+|||++++++|||+|||+||||++|+++ |
T Consensus 80 ~~~~~~~~l~~~dtp~~~~~~~~a~~aaGg~l~aa~~v~~g~~a~~ppGG~HHA~~~~a~GFC~fNnvAiAa~~l~~~-g 158 (375)
T 1c3p_A 80 KGAREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKGNVAFNPAGGMHHAFKSRANGFCYINNPAVGIEYLRKK-G 158 (375)
T ss_dssp TTHHHHHCCSSSSSCSSTTTTHHHHHHHHHHHHHHHHHHTTCEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHHHT-T
T ss_pred hHHhhccccCCCCcccChhHHHHHHHHhhHHHHHHHHHHcCCceeecCcccceeeeccCCCceeecHHHHHHHHHHHh-C
Confidence 000001123 67999999999999999999999999999877888888888999999999999999999999999876 6
Q ss_pred CCeEEEEccCCcCChhhhHhhhCCCCEEEEeecCCC--CCCCCcccC--------CceeeeccCCCCCCCC
Q 025519 190 ISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPG--IYPRDYEAR--------RFIDQKVEVVVNNQYT 250 (251)
Q Consensus 190 ~~rV~IiD~DvHhGnGtq~if~~d~~Vl~iSiH~~~--~yP~tg~~~--------~~~~~~vpl~~g~~d~ 250 (251)
.+||+|||||||||||||+|||+||+|||+|+|+.+ |||+||... .++++|||||+|++|+
T Consensus 159 ~~RV~IvD~DvHHGnGtq~iF~~dp~Vl~~SiH~~~~~ffPgtG~~~e~G~~g~g~g~~vNvPL~~g~~D~ 229 (375)
T 1c3p_A 159 FKRILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDN 229 (375)
T ss_dssp CCCEEEEECSSSCCHHHHHHHTTCSSEEEEEEEECTTTSTTSSSCCTTCCCCGGGTTSEEEEEECTTCCHH
T ss_pred CCeEEEEecCCCCCHHHHHHhccCCCEEEEecccCCCCCCCCCCCccccCCcCCCCceEEEEeCCCCCCHH
Confidence 799999999999999999999999999999999975 679998432 3699999999999985
No 6
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=100.00 E-value=2.5e-62 Score=453.90 Aligned_cols=216 Identities=25% Similarity=0.331 Sum_probs=188.0
Q ss_pred CCCCCceeEEECcccCcccCCCCCCCCCCchHHHHHHHHHHHCCCCCCceeecCCCCCHHHHhccCCHHHHHHHhcCCCc
Q 025519 29 DIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNV 108 (251)
Q Consensus 29 ~~p~~~~~~vy~~~~~~h~~~~~~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~p~~as~~~L~~vHs~~Yv~~l~~~~~~ 108 (251)
..++.++.++|+|+|..|. .+|||+|+|+++|.++|++.|+++.+++++|++|++++|++||+++||++|++.+..
T Consensus 10 ~~~~~~~~~~y~~~~~~~~----~~HPe~P~Rl~~i~~ll~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~ 85 (388)
T 3ew8_A 10 SGQSLVPVYIYSPEYVSMC----DSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQE 85 (388)
T ss_dssp ----CCCEEECCHHHHHHH----TTCTTSTTHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHHHHH
T ss_pred cCCCCcEEEEEChHHhccC----CCCCCCcHHHHHHHHHHHHcCCcccCeEeCCCCCCHHHHHhhCCHHHHHHHHHhccc
Confidence 4556789999999998873 479999999999999999999999999999999999999999999999999986542
Q ss_pred ccc--cccCCcccCCCcccccccHHHHHHHhcHHHHHHHHHHHc--CceeecCCCCCCCCCCCCCCccccccHHHHHHHH
Q 025519 109 SII--IEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKER--GWAINVGGGFHHCSADEGGGFCAYADISLCIHYA 184 (251)
Q Consensus 109 ~~~--~e~~~~~~~~d~~~~~~~~~~a~~a~G~~l~aa~~~~~~--~~a~~~~~G~HHA~~~~~~GFC~fNnvAiAa~~l 184 (251)
... .+.....+..||++++++++++++++||+|.|++.++++ ++|++||||+|||++++++|||+|||+||||++|
T Consensus 86 ~~~~~~~~~~~~lg~Dtp~~~~~~e~a~~aaGgsl~Aa~~v~~g~~~~Ai~~pGG~HHA~~~~a~GFC~~NdiaiAa~~l 165 (388)
T 3ew8_A 86 GDDDHPDSIEYGLGYLCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRL 165 (388)
T ss_dssp C--------CCSCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHH
T ss_pred ccccchhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHcCCCceeeecCCcccceeecCCCCchhhhHHHHHHHHH
Confidence 211 011123456799999999999999999999999999864 5899999999999999999999999999999999
Q ss_pred HHhCCCCeEEEEccCCcCChhhhHhhhCCCCEEEEeecCC--CCCCCCcccC-------CceeeeccCCCCCCCC
Q 025519 185 FVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNP--GIYPRDYEAR-------RFIDQKVEVVVNNQYT 250 (251)
Q Consensus 185 ~~~~~~~rV~IiD~DvHhGnGtq~if~~d~~Vl~iSiH~~--~~yP~tg~~~-------~~~~~~vpl~~g~~d~ 250 (251)
++. .+||+|||||||||||||+|||+||+|||+|+|+. +|||+||... +++++|||||+|++|+
T Consensus 166 ~~~--~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~fPgtG~~~e~G~g~g~g~~vNvPL~~G~~d~ 238 (388)
T 3ew8_A 166 RRK--FERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDE 238 (388)
T ss_dssp TTT--CSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECCTTCTTCCCCTTCCCCGGGTTSEEEEEECTTCCHH
T ss_pred Hhc--CCeEEEEecCCCCChhHHHHhccCCCEEEEecCCCCCCCCCCCCCcccccCCCCcceeeeccCCCCCCHH
Confidence 864 79999999999999999999999999999999985 5999999642 5799999999999985
No 7
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=100.00 E-value=4.7e-62 Score=446.07 Aligned_cols=211 Identities=19% Similarity=0.245 Sum_probs=183.5
Q ss_pred eeEEECcccCcccCCCC------CCCCCCchHHHHHHHHHHHCCCCCCceeecCCCCCHHHHhccCCHHHHHHHhcCCCc
Q 025519 35 LPLIYSPDYDISFLGIE------KLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNV 108 (251)
Q Consensus 35 ~~~vy~~~~~~h~~~~~------~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~p~~as~~~L~~vHs~~Yv~~l~~~~~~ 108 (251)
+.++|+|+|+.|..+.. ..|||+|+|+++|+++|++.|+. ++++|++|++++|++||+++||++|++.+..
T Consensus 1 m~~v~~~~~~~H~~~~~~~~G~~~~HPE~P~Rl~~i~~~L~~~gl~---~~~~p~~at~e~L~~vHs~~Yi~~l~~~~~~ 77 (341)
T 3q9b_A 1 MRVIFSEDHKLRNAKTELYGGELVPPFEAPFRAEWILAAVKEAGFD---DVVAPARHGLETVLKVHDAGYLNFLETAWDR 77 (341)
T ss_dssp CEEECCGGGGGCCCSCEEETTEEECCSSCTHHHHHHHHHHHHTTCC---CEECCCCCCSTTGGGTSCHHHHHHHHHHHHH
T ss_pred CEEEECcHHhccCCcccccCCCcCCCCCChHHHHHHHHHHHhCCCC---ceeCCCCCCHHHHHHhCCHHHHHHHHHhhhh
Confidence 46899999999987531 25999999999999999999985 5789999999999999999999999976421
Q ss_pred c-----c---cccc----------C--------CcccCCCcccccccHHHHHHHhcHHHHHHHHHHH---cCceeecCCC
Q 025519 109 S-----I---IIEV----------P--------PVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKE---RGWAINVGGG 159 (251)
Q Consensus 109 ~-----~---~~e~----------~--------~~~~~~d~~~~~~~~~~a~~a~G~~l~aa~~~~~---~~~a~~~~~G 159 (251)
. . ..+. + ...+++||++++++++++++++|+++.|++.+++ ++||++||||
T Consensus 78 ~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~g~~~~d~dt~~~~~~~~aa~~aaG~~l~a~~~v~~g~~~afal~rppG 157 (341)
T 3q9b_A 78 WKAAGYKGEAIATSFPVRRTSPRIPTDIEGQIGYYCNAAETAISPGTWEAALSSMASAIDGADLIAAGHKAAFSLCRPPG 157 (341)
T ss_dssp HHHTTCSSCBCCCBCCCTTCCCCCCSSHHHHHHHTBSBTTCCBCTTHHHHHHHHHHHHHHHHHHHHHTCSEEEECCSSCC
T ss_pred hhhcccccccccccccccccccccccchhcccceeccCCCCCcChhHHHHHHHHHHHHHHHHHHHHhCCCceEecCCCCC
Confidence 0 0 0000 0 0235789999999999999999999999999986 3699999999
Q ss_pred CCCCCCCCCCCccccccHHHHHHHHHHhCCCCeEEEEccCCcCChhhhHhhhCCCCEEEEeecCC--CCCCC-Cccc---
Q 025519 160 FHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNP--GIYPR-DYEA--- 233 (251)
Q Consensus 160 ~HHA~~~~~~GFC~fNnvAiAa~~l~~~~~~~rV~IiD~DvHhGnGtq~if~~d~~Vl~iSiH~~--~~yP~-tg~~--- 233 (251)
|||++++++|||+|||+||||++|+++ |++||+|||||||||||||+|||+||+|||+|+|+. .+||+ ||..
T Consensus 158 -HHA~~~~a~GFC~~NnvaiAa~~l~~~-g~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~yP~~tG~~~e~ 235 (341)
T 3q9b_A 158 -HHAGIDMFGGYCFINNAAVAAQRLLDK-GAKKIAILDVDFHHGNGTQDIFYERGDVFFASLHGDPAEAFPHFLGYAEET 235 (341)
T ss_dssp -TTCBTTBBBTTBSSCHHHHHHHHHHHT-TCSCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGGGSTTCSSCCTTCC
T ss_pred -CCCCCCCCCCccccCHHHHHHHHHHHc-CCCeEEEEecCCCCCcchhHHhcCCCCEEEEeccCCCccCCCCCCCccccc
Confidence 999999999999999999999999985 699999999999999999999999999999999997 49999 7753
Q ss_pred ----CCceeeeccCCCCCCCC
Q 025519 234 ----RRFIDQKVEVVVNNQYT 250 (251)
Q Consensus 234 ----~~~~~~~vpl~~g~~d~ 250 (251)
++++++|||||+|++|+
T Consensus 236 G~g~g~g~~vNvpL~~g~~d~ 256 (341)
T 3q9b_A 236 GKGAGAGTTANYPMGRGTPYS 256 (341)
T ss_dssp CCGGGTTCEEEEEECTTCBHH
T ss_pred CCCCCCceeEeeecCCCCChH
Confidence 25799999999999985
No 8
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=1.8e-61 Score=444.70 Aligned_cols=216 Identities=18% Similarity=0.229 Sum_probs=182.5
Q ss_pred ccCCCCCceeEEECcccCcccCCCC------CCCCCCchHHHHHHHHHHHCCCCCCceeecCCCCCHHHHhccCCHHHHH
Q 025519 27 YFDIPIFKLPLIYSPDYDISFLGIE------KLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLK 100 (251)
Q Consensus 27 ~~~~p~~~~~~vy~~~~~~h~~~~~------~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~p~~as~~~L~~vHs~~Yv~ 100 (251)
+.+-|. .+.++|+|+|+.|.++.. ..|||+|+|+++|+++|++.|+ ++++|++|++++|++||+++||+
T Consensus 15 ~~~~~~-~M~~~~~~~~~~H~~~~~~~~G~~~~HPE~P~Rl~~i~~~L~~~gl----~~~~p~~At~e~L~~vHs~~YI~ 89 (362)
T 3men_A 15 QTQGPG-SMLTYFHPDQSLHHPRTYFSRGRMRMPQEVPERAARLVAAAFAMGF----PVREPDDFGIAPIAAVHDTHYLR 89 (362)
T ss_dssp -------CCEEECCGGGGGCCCCCEEETTEEECCCSCTHHHHHHHHHHHHTTC----CEECCCCCCSHHHHTTSCHHHHH
T ss_pred hhcCCC-ceEEEEChHHHhhCCccccccCCcCCCCCChHHHHHHHHHHHhCCC----eEeCCCCCCHHHHHHhCCHHHHH
Confidence 344443 356999999999987531 2699999999999999999997 68899999999999999999999
Q ss_pred HHhcCCCccc------ccc-cC------------------CcccCCCcccccccHHHHHHHhcHHHHHHHHHHH---cCc
Q 025519 101 SLQSSPNVSI------IIE-VP------------------PVALFPNCLVQRKVLYPFRKQVGGTILAAKLAKE---RGW 152 (251)
Q Consensus 101 ~l~~~~~~~~------~~e-~~------------------~~~~~~d~~~~~~~~~~a~~a~G~~l~aa~~~~~---~~~ 152 (251)
+|++.+.... ..+ ++ ...+++||+++++++++|++++|++|.|++.+++ ++|
T Consensus 90 ~l~~~~~~~~~~~~~~~~e~~p~~~p~~~~~p~~~~~~~g~~~~d~Dtpv~~~~~~aa~~aaG~~l~aa~~v~~g~~~af 169 (362)
T 3men_A 90 FLETVHREWKAMPEDWGDEAMSNIFVREPNALRGVLAQAARHLADGSCPVGEHTWRAAYWSAQSALAAAAAVRDGAPAAY 169 (362)
T ss_dssp HHHHHHHHHHTSCGGGCSSBCCCBCCCSSCCCCSHHHHHHHHBCBTTCCBCTTHHHHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHhhhhhhhcccccccccccccccccccccccccccccccccCCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCceE
Confidence 9987642110 000 00 0235789999999999999999999999999985 469
Q ss_pred eeecCCCCCCCCCCCCCCccccccHHHHHHHHHHhCCCCeEEEEccCCcCChhhhHhhhCCCCEEEEeecCC--CCCCC-
Q 025519 153 AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNP--GIYPR- 229 (251)
Q Consensus 153 a~~~~~G~HHA~~~~~~GFC~fNnvAiAa~~l~~~~~~~rV~IiD~DvHhGnGtq~if~~d~~Vl~iSiH~~--~~yP~- 229 (251)
|++|||| |||++++++|||+|||+||||++|+++ .+||+|||||||||||||+|||+||+|||+|+|+. .|||+
T Consensus 170 al~rPpG-HHA~~~~a~GFC~fNnvAiAa~~l~~~--~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~yP~~ 246 (362)
T 3men_A 170 ALCRPPG-HHARVDAAGGFCYLNNAAIAAQALRAR--HARVAVLDTDMHHGQGIQEIFYARRDVLYVSIHGDPTNFYPAV 246 (362)
T ss_dssp ECCSSCC-TTCBTTBBBTTBSSCHHHHHHHHHTTT--CSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECCTTSTTCS
T ss_pred EeCCCCC-CCCCCCCCCCccccCHHHHHHHHHHHc--CCeEEEEeCcCCCchhHhHHhcCCCCEEEEEecCCCccCCCCC
Confidence 9999998 999999999999999999999999987 69999999999999999999999999999999996 49999
Q ss_pred Cccc-------CCceeeeccCCCCCCCC
Q 025519 230 DYEA-------RRFIDQKVEVVVNNQYT 250 (251)
Q Consensus 230 tg~~-------~~~~~~~vpl~~g~~d~ 250 (251)
||.. ++++++|||||+|++|+
T Consensus 247 tG~~~e~G~g~g~g~~vNvPL~~g~~d~ 274 (362)
T 3men_A 247 AGFDDERGAGEGLGYNVNLPMPHGSSEA 274 (362)
T ss_dssp SCCTTCCCSGGGTTSEEEEEECTTBCHH
T ss_pred CCccccccCCCCCceeEeeccCCCCChH
Confidence 7754 24799999999999985
No 9
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*
Probab=100.00 E-value=4.1e-61 Score=451.34 Aligned_cols=220 Identities=20% Similarity=0.265 Sum_probs=185.8
Q ss_pred CCCCceeEEECcccCcccCCCC--CCCCCCchHHHHHHHHHHHCCCCCCceeecCCCCCHHHHhccCCHHHHHHHhcCCC
Q 025519 30 IPIFKLPLIYSPDYDISFLGIE--KLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPN 107 (251)
Q Consensus 30 ~p~~~~~~vy~~~~~~h~~~~~--~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~p~~as~~~L~~vHs~~Yv~~l~~~~~ 107 (251)
.|+|+|+||||++|+.|.++++ ..|||+|+|++.|+++|++.|+.+.+++++|++|++++|++||+++||+.++....
T Consensus 5 ~p~~~Tg~vyd~~~l~H~~~~g~~~~HPE~P~Rl~~i~~~L~~~gl~~~~~~~~p~~At~eeL~~vHs~~Yv~~~~~~~~ 84 (413)
T 2vqm_A 5 KPRFTTGLVYDTLMLKHQCTCGSSSSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPL 84 (413)
T ss_dssp -CCSSEEEECCGGGCSCCCTTC-------CCCHHHHHHHHHHHHTHHHHSEEECCCCCCHHHHTTTSCHHHHHHHHSCGG
T ss_pred CCCCeEEEEEcHHHhccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCcCCeEeCCCCCCHHHHHHhCCHHHHHHHhcCch
Confidence 5889999999999999987654 56999999999999999999999999999999999999999999999998876543
Q ss_pred ccccc--------------c--cCCcccCCCccccc-ccHHHHHHHhcHHHHHHHHHHH----cCceeecCCCCCCCCCC
Q 025519 108 VSIII--------------E--VPPVALFPNCLVQR-KVLYPFRKQVGGTILAAKLAKE----RGWAINVGGGFHHCSAD 166 (251)
Q Consensus 108 ~~~~~--------------e--~~~~~~~~d~~~~~-~~~~~a~~a~G~~l~aa~~~~~----~~~a~~~~~G~HHA~~~ 166 (251)
..... . .....++.|+.++. .++.+|++++|+++.|++.++. ++||++|||| |||.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~dt~~~~~~s~~aA~laaG~~l~a~~~v~~g~~~~afa~vrppG-HHA~~~ 163 (413)
T 2vqm_A 85 NRQKLDSKKLLGSLASVFVRLPCGGVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGFAVVRPPG-HHAEES 163 (413)
T ss_dssp GGCC----HHHHHHHHHEEECTTSCEEECTTSTHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCCSCC-TTCBTT
T ss_pred hhhHhhhhhhccchhhhhhccccCCcCccCCccccchhHHHHHHHHHHHHHHHHHHHhcCCccceeeeccccc-ccCcCC
Confidence 21100 0 11233566776655 6789999999999999999875 4689999988 999999
Q ss_pred CCCCccccccHHHHHHHHHHhCCCCeEEEEccCCcCChhhhHhhhCCCCEEEEeecCC---CCCCCCccc-------CCc
Q 025519 167 EGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNP---GIYPRDYEA-------RRF 236 (251)
Q Consensus 167 ~~~GFC~fNnvAiAa~~l~~~~~~~rV~IiD~DvHhGnGtq~if~~d~~Vl~iSiH~~---~~yP~tg~~-------~~~ 236 (251)
+++|||+|||+||||++|+++++++||+|||||||||||||+|||+||+|+|+|+|+. +|||+||.. +.+
T Consensus 164 ~a~GFC~~Nnvaiaa~~~~~~~~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~f~pgtG~~~e~G~g~g~g 243 (413)
T 2vqm_A 164 TPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVG 243 (413)
T ss_dssp BCBTTBSSCHHHHHHHHHHHHSCCSCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGGGCSTTCCCCTTCCCSGGGTT
T ss_pred CCCCccccchHHHHHHHHHHhcCCCeEEEEecccCCCccHHHHHhcCcccccccchhccCCCCCCCCCCHHHcCCCcccc
Confidence 9999999999999999999999999999999999999999999999999999999985 599999964 358
Q ss_pred eeeeccCCCC----CCCC
Q 025519 237 IDQKVEVVVN----NQYT 250 (251)
Q Consensus 237 ~~~~vpl~~g----~~d~ 250 (251)
+|+||||+.| ++|+
T Consensus 244 ~~~n~pl~~g~~~~~~D~ 261 (413)
T 2vqm_A 244 FNVNMAFTGGLDPPMGDA 261 (413)
T ss_dssp CEEEEEECSCSSSCCCHH
T ss_pred cccccccccccCCCCCHH
Confidence 9999998865 5663
No 10
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=57.72 E-value=9.6 Score=31.70 Aligned_cols=22 Identities=9% Similarity=0.315 Sum_probs=15.6
Q ss_pred hCCCCeEEEEccCCcCChhhhHhh
Q 025519 187 QLNISRVMIIDLDAHQGNGHEKDF 210 (251)
Q Consensus 187 ~~~~~rV~IiD~DvHhGnGtq~if 210 (251)
+.| +||++||+|. +|+.+...+
T Consensus 27 ~~G-~~VlliD~D~-q~~~~~~~~ 48 (269)
T 1cp2_A 27 AMG-KTIMVVGCDP-KADSTRLLL 48 (269)
T ss_dssp TTT-CCEEEEEECT-TSCSSHHHH
T ss_pred HCC-CcEEEEcCCC-CCCHHHHhc
Confidence 444 7999999996 455665554
No 11
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=54.49 E-value=11 Score=33.62 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=17.0
Q ss_pred hCCCCeEEEEccCCcCChhhhHhh
Q 025519 187 QLNISRVMIIDLDAHQGNGHEKDF 210 (251)
Q Consensus 187 ~~~~~rV~IiD~DvHhGnGtq~if 210 (251)
+.| +||++||+|.. ||.+..++
T Consensus 28 ~~G-~rVLlID~D~q-~~~~~~l~ 49 (361)
T 3pg5_A 28 LQG-KRVLYVDCDPQ-CNATQLML 49 (361)
T ss_dssp HTT-CCEEEEECCTT-CTTHHHHS
T ss_pred hCC-CcEEEEEcCCC-CChhhhhc
Confidence 344 79999999977 77777654
No 12
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=54.06 E-value=11 Score=30.64 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=13.7
Q ss_pred hCCCCeEEEEccCCcCCh
Q 025519 187 QLNISRVMIIDLDAHQGN 204 (251)
Q Consensus 187 ~~~~~rV~IiD~DvHhGn 204 (251)
+.| +||++||+|..+|+
T Consensus 29 ~~g-~~VlliD~D~~~~~ 45 (237)
T 1g3q_A 29 DRG-RKVLAVDGDLTMAN 45 (237)
T ss_dssp HTT-CCEEEEECCTTSCC
T ss_pred hcC-CeEEEEeCCCCCCC
Confidence 344 79999999998775
No 13
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=53.48 E-value=13 Score=30.18 Aligned_cols=18 Identities=17% Similarity=0.208 Sum_probs=14.8
Q ss_pred CeEEEEccCCcCChhhhH
Q 025519 191 SRVMIIDLDAHQGNGHEK 208 (251)
Q Consensus 191 ~rV~IiD~DvHhGnGtq~ 208 (251)
+||++||+|...|+=+..
T Consensus 35 ~~VlliD~D~~~~~l~~~ 52 (245)
T 3ea0_A 35 IHVLAVDISLPFGDLDMY 52 (245)
T ss_dssp CCEEEEECCTTTCCGGGG
T ss_pred CCEEEEECCCCCCCHHHH
Confidence 799999999987775544
No 14
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=53.42 E-value=11 Score=31.19 Aligned_cols=18 Identities=39% Similarity=0.418 Sum_probs=14.2
Q ss_pred hCCCCeEEEEccCCcCChh
Q 025519 187 QLNISRVMIIDLDAHQGNG 205 (251)
Q Consensus 187 ~~~~~rV~IiD~DvHhGnG 205 (251)
+.| +||++||+|...||-
T Consensus 29 ~~g-~~VlliD~D~~~~~l 46 (263)
T 1hyq_A 29 QLG-HDVTIVDADITMANL 46 (263)
T ss_dssp HTT-CCEEEEECCCSSSSH
T ss_pred hCC-CcEEEEECCCCCCCc
Confidence 344 799999999987753
No 15
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=52.58 E-value=12 Score=30.84 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=15.0
Q ss_pred hCCCCeEEEEccCCcCChhhh
Q 025519 187 QLNISRVMIIDLDAHQGNGHE 207 (251)
Q Consensus 187 ~~~~~rV~IiD~DvHhGnGtq 207 (251)
+.| +||++||+|..+||-+.
T Consensus 29 ~~g-~~VlliD~D~~~~~~~~ 48 (260)
T 3q9l_A 29 QKG-KKTVVIDFAIGLRNLDL 48 (260)
T ss_dssp HTT-CCEEEEECCCSSCCHHH
T ss_pred hCC-CcEEEEECCCCCCChhH
Confidence 344 79999999998776443
No 16
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=52.03 E-value=13 Score=31.44 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=15.3
Q ss_pred hCCCCeEEEEccCCcCChhhhHhh
Q 025519 187 QLNISRVMIIDLDAHQGNGHEKDF 210 (251)
Q Consensus 187 ~~~~~rV~IiD~DvHhGnGtq~if 210 (251)
+.| +||++||+|.. |+.+...+
T Consensus 28 ~~G-~rVlliD~D~q-~~~~~~~~ 49 (289)
T 2afh_E 28 EMG-KKVMIVGCDPK-ADSTRLIL 49 (289)
T ss_dssp HTT-CCEEEEEECSS-SCSSHHHH
T ss_pred HCC-CeEEEEecCCC-CCHHHHhc
Confidence 344 79999999975 55555544
No 17
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=51.34 E-value=14 Score=30.68 Aligned_cols=15 Identities=53% Similarity=0.975 Sum_probs=12.5
Q ss_pred CeEEEEccCCcCChhh
Q 025519 191 SRVMIIDLDAHQGNGH 206 (251)
Q Consensus 191 ~rV~IiD~DvHhGnGt 206 (251)
+||++||+|. +|+-+
T Consensus 36 ~~VlliD~D~-~~~~~ 50 (257)
T 1wcv_1 36 KRVLLVDLDP-QGNAT 50 (257)
T ss_dssp CCEEEEECCT-TCHHH
T ss_pred CCEEEEECCC-CcCHH
Confidence 7999999998 47654
No 18
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=50.11 E-value=12 Score=30.25 Aligned_cols=20 Identities=10% Similarity=0.059 Sum_probs=14.5
Q ss_pred HHhCCCCeEEEEccCCcCChhh
Q 025519 185 FVQLNISRVMIIDLDAHQGNGH 206 (251)
Q Consensus 185 ~~~~~~~rV~IiD~DvHhGnGt 206 (251)
+.+.| +||++||+|.. |+=+
T Consensus 24 la~~g-~~VlliD~D~~-~~l~ 43 (254)
T 3kjh_A 24 MASDY-DKIYAVDGDPD-SCLG 43 (254)
T ss_dssp HTTTC-SCEEEEEECTT-SCHH
T ss_pred HHHCC-CeEEEEeCCCC-cChH
Confidence 33445 89999999995 5533
No 19
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=49.69 E-value=16 Score=31.05 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=16.0
Q ss_pred hCCCCeEEEEccCCcCChhhhH
Q 025519 187 QLNISRVMIIDLDAHQGNGHEK 208 (251)
Q Consensus 187 ~~~~~rV~IiD~DvHhGnGtq~ 208 (251)
+.| +||++||+|..+|+-+..
T Consensus 31 ~~G-~~VlliD~D~~q~~l~~~ 51 (286)
T 2xj4_A 31 YGG-AKVAVIDLDLRQRTSARF 51 (286)
T ss_dssp HTT-CCEEEEECCTTTCHHHHH
T ss_pred HCC-CcEEEEECCCCCCCHHHH
Confidence 444 799999999977776543
No 20
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=43.52 E-value=18 Score=31.20 Aligned_cols=14 Identities=43% Similarity=0.769 Sum_probs=12.4
Q ss_pred CeEEEEccCCcCCh
Q 025519 191 SRVMIIDLDAHQGN 204 (251)
Q Consensus 191 ~rV~IiD~DvHhGn 204 (251)
+||++||+|...|+
T Consensus 122 ~rVLLID~D~~~~~ 135 (286)
T 3la6_A 122 KRVLLIDCDMRKGY 135 (286)
T ss_dssp CCEEEEECCTTTCC
T ss_pred CCEEEEeccCCCCC
Confidence 79999999998764
No 21
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=42.83 E-value=20 Score=30.54 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=14.2
Q ss_pred hCCCCeEEEEccCCcCChhhhH
Q 025519 187 QLNISRVMIIDLDAHQGNGHEK 208 (251)
Q Consensus 187 ~~~~~rV~IiD~DvHhGnGtq~ 208 (251)
+.| +||++||+|. +||-+..
T Consensus 67 ~~G-~~VlliD~D~-~~~~~~~ 86 (307)
T 3end_A 67 ILG-KRVLQIGCDP-KHDSTFT 86 (307)
T ss_dssp HTT-CCEEEEEESS-SCCTTHH
T ss_pred HCC-CeEEEEeCCC-CCCHHHH
Confidence 444 7999999998 4655433
No 22
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=41.77 E-value=22 Score=30.02 Aligned_cols=20 Identities=30% Similarity=0.466 Sum_probs=14.4
Q ss_pred hCCCCeEEEEccCCcCChhhhH
Q 025519 187 QLNISRVMIIDLDAHQGNGHEK 208 (251)
Q Consensus 187 ~~~~~rV~IiD~DvHhGnGtq~ 208 (251)
+.| +||++||+|.. |+.+..
T Consensus 63 ~~G-~rVlliD~D~q-~~~~~~ 82 (298)
T 2oze_A 63 KLN-LKVLMIDKDLQ-ATLTKD 82 (298)
T ss_dssp HTT-CCEEEEEECTT-CHHHHH
T ss_pred hCC-CeEEEEeCCCC-CCHHHH
Confidence 444 79999999996 555443
No 23
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=40.08 E-value=23 Score=30.06 Aligned_cols=14 Identities=21% Similarity=0.382 Sum_probs=12.2
Q ss_pred CeEEEEccCCcCCh
Q 025519 191 SRVMIIDLDAHQGN 204 (251)
Q Consensus 191 ~rV~IiD~DvHhGn 204 (251)
+||++||+|...++
T Consensus 112 ~rVLLID~D~~~~~ 125 (271)
T 3bfv_A 112 YKTLIVDGDMRKPT 125 (271)
T ss_dssp CCEEEEECCSSSCC
T ss_pred CeEEEEeCCCCCcc
Confidence 79999999988764
No 24
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=40.04 E-value=24 Score=29.38 Aligned_cols=18 Identities=22% Similarity=0.143 Sum_probs=13.9
Q ss_pred hCCCCeEEEEccCCcCChh
Q 025519 187 QLNISRVMIIDLDAHQGNG 205 (251)
Q Consensus 187 ~~~~~rV~IiD~DvHhGnG 205 (251)
+.| +||++||+|...++-
T Consensus 45 ~~G-~~VlliD~D~~~~~l 62 (262)
T 2ph1_A 45 RQG-KKVGILDADFLGPSI 62 (262)
T ss_dssp HTT-CCEEEEECCSSCCHH
T ss_pred HCC-CeEEEEeCCCCCCCH
Confidence 344 799999999977653
No 25
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=39.85 E-value=47 Score=25.84 Aligned_cols=20 Identities=15% Similarity=0.136 Sum_probs=13.4
Q ss_pred hCCCCeEEEEccCCcCChhhhH
Q 025519 187 QLNISRVMIIDLDAHQGNGHEK 208 (251)
Q Consensus 187 ~~~~~rV~IiD~DvHhGnGtq~ 208 (251)
+.| +||++||+|- +|+-+..
T Consensus 28 ~~g-~~vlliD~D~-~~~~~~~ 47 (206)
T 4dzz_A 28 RSG-YNIAVVDTDP-QMSLTNW 47 (206)
T ss_dssp HTT-CCEEEEECCT-TCHHHHH
T ss_pred HCC-CeEEEEECCC-CCCHHHH
Confidence 344 7999999993 4444443
No 26
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=39.35 E-value=24 Score=31.36 Aligned_cols=13 Identities=15% Similarity=0.603 Sum_probs=10.9
Q ss_pred CeEEEEccCCcCCh
Q 025519 191 SRVMIIDLDAHQGN 204 (251)
Q Consensus 191 ~rV~IiD~DvHhGn 204 (251)
+||++||+| ..||
T Consensus 173 ~rVlliD~D-~~~~ 185 (373)
T 3fkq_A 173 KKVFYLNIE-QCGT 185 (373)
T ss_dssp CCEEEEECC-TTCC
T ss_pred CCEEEEECC-CCCC
Confidence 799999999 6653
No 27
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=38.70 E-value=50 Score=29.03 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=17.8
Q ss_pred hCCCCeEEEEccCCcCChhhhHhhhCC
Q 025519 187 QLNISRVMIIDLDAHQGNGHEKDFSSD 213 (251)
Q Consensus 187 ~~~~~rV~IiD~DvHhGnGtq~if~~d 213 (251)
+.| +||++||+|.- + +....|..+
T Consensus 52 ~~G-~rVLlvD~D~~-~-~l~~~l~~~ 75 (349)
T 3ug7_A 52 EKG-LKVVIVSTDPA-H-SLRDIFEQE 75 (349)
T ss_dssp HSS-CCEEEEECCTT-C-HHHHHHCSC
T ss_pred HCC-CeEEEEeCCCC-C-CHHHHhCCC
Confidence 344 79999999993 3 677777654
No 28
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=37.73 E-value=30 Score=29.79 Aligned_cols=15 Identities=33% Similarity=0.640 Sum_probs=12.9
Q ss_pred CeEEEEccCCcCChh
Q 025519 191 SRVMIIDLDAHQGNG 205 (251)
Q Consensus 191 ~rV~IiD~DvHhGnG 205 (251)
+||++||+|...++-
T Consensus 134 ~rVLLID~D~r~~~l 148 (299)
T 3cio_A 134 QKVLFIDADLRRGYS 148 (299)
T ss_dssp CCEEEEECCTTTCCH
T ss_pred CcEEEEECCCCCccH
Confidence 899999999987654
No 29
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=37.58 E-value=25 Score=29.07 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=13.4
Q ss_pred CeEEEEccCCcCChhhhHh
Q 025519 191 SRVMIIDLDAHQGNGHEKD 209 (251)
Q Consensus 191 ~rV~IiD~DvHhGnGtq~i 209 (251)
+||++||+|.. |+.+...
T Consensus 56 ~~VlliD~D~~-~~~~~~~ 73 (267)
T 3k9g_A 56 NKVLLIDMDTQ-ASITSYF 73 (267)
T ss_dssp SCEEEEEECTT-CHHHHHT
T ss_pred CCEEEEECCCC-CCHHHHh
Confidence 89999999985 4554443
No 30
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=35.23 E-value=31 Score=27.76 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=14.5
Q ss_pred HHhCCCCeEEEEccCCcCChhhh
Q 025519 185 FVQLNISRVMIIDLDAHQGNGHE 207 (251)
Q Consensus 185 ~~~~~~~rV~IiD~DvHhGnGtq 207 (251)
+.+.| ||++||+|.. |+.+.
T Consensus 25 la~~g--~VlliD~D~q-~~~~~ 44 (209)
T 3cwq_A 25 LALQG--ETLLIDGDPN-RSATG 44 (209)
T ss_dssp HHTTS--CEEEEEECTT-CHHHH
T ss_pred HHhcC--CEEEEECCCC-CCHHH
Confidence 34456 9999999985 56554
No 31
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=32.56 E-value=34 Score=29.72 Aligned_cols=20 Identities=10% Similarity=0.285 Sum_probs=15.0
Q ss_pred CeEEEEccCCcCChhhhHhhhC
Q 025519 191 SRVMIIDLDAHQGNGHEKDFSS 212 (251)
Q Consensus 191 ~rV~IiD~DvHhGnGtq~if~~ 212 (251)
+||++||.|. .+ .....|..
T Consensus 43 ~rVLlvD~D~-~~-~l~~~l~~ 62 (324)
T 3zq6_A 43 KKTLVISTDP-AH-SLSDSLER 62 (324)
T ss_dssp CCEEEEECCS-SC-CHHHHHTS
T ss_pred CcEEEEeCCC-Cc-CHHHHhCC
Confidence 7999999999 43 45566654
No 32
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=30.09 E-value=41 Score=29.89 Aligned_cols=13 Identities=46% Similarity=0.853 Sum_probs=11.5
Q ss_pred CeEEEEccCCcCCh
Q 025519 191 SRVMIIDLDAHQGN 204 (251)
Q Consensus 191 ~rV~IiD~DvHhGn 204 (251)
+||++||+|. +||
T Consensus 144 ~rVlliD~D~-q~~ 156 (398)
T 3ez2_A 144 LRILVIDLDP-QSS 156 (398)
T ss_dssp CCEEEEEECT-TCH
T ss_pred CeEEEEeCCC-CCC
Confidence 7999999999 566
No 33
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=27.29 E-value=18 Score=31.57 Aligned_cols=41 Identities=5% Similarity=0.097 Sum_probs=33.0
Q ss_pred ccccccHHHHHHHHHHhCCCCeEEEEccCCcCChhhhHhhhC
Q 025519 171 FCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSS 212 (251)
Q Consensus 171 FC~fNnvAiAa~~l~~~~~~~rV~IiD~DvHhGnGtq~if~~ 212 (251)
++.-+.+..+++|+.++ |.+||+||.-|-=.|.|..+.|..
T Consensus 104 ~~~~~~~~~~a~~a~~~-g~k~vail~~~~~yG~~~~~~F~~ 144 (325)
T 2h4a_A 104 LSPEDEAESAANKMWND-GVRNPLVAMPQNDLGQRVGNAFNV 144 (325)
T ss_dssp CCHHHHHHHHHHHHHHT-TCCSCEEEEESSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHc-CCCeEEEEEcCCcHHHHHHHHHHH
Confidence 44445677888998765 899999999898899999888874
No 34
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=27.19 E-value=45 Score=29.04 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=15.3
Q ss_pred hCCCCeEEEEccCCcCChhhhHhhh
Q 025519 187 QLNISRVMIIDLDAHQGNGHEKDFS 211 (251)
Q Consensus 187 ~~~~~rV~IiD~DvHhGnGtq~if~ 211 (251)
+.| +||++||.|..+ .....|.
T Consensus 45 ~~G-~rVllvD~D~~~--~l~~~l~ 66 (329)
T 2woo_A 45 KVR-SSVLLISTDPAH--NLSDAFG 66 (329)
T ss_dssp TSS-SCEEEEECCTTC--HHHHHHS
T ss_pred HCC-CeEEEEECCCCc--CHHHHhC
Confidence 444 799999999973 3444554
No 35
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=26.41 E-value=39 Score=29.49 Aligned_cols=16 Identities=38% Similarity=0.538 Sum_probs=12.2
Q ss_pred HHhCCCCeEEEEccCCc
Q 025519 185 FVQLNISRVMIIDLDAH 201 (251)
Q Consensus 185 ~~~~~~~rV~IiD~DvH 201 (251)
+.+.| +||++||+|-.
T Consensus 72 LA~~G-kkVllID~Dpq 87 (314)
T 3fwy_A 72 FSILG-KRVLQIGCDPK 87 (314)
T ss_dssp HHHTT-CCEEEEEESSS
T ss_pred HHHCC-CeEEEEecCCC
Confidence 34455 79999999974
No 36
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=26.13 E-value=36 Score=30.31 Aligned_cols=13 Identities=46% Similarity=0.856 Sum_probs=11.3
Q ss_pred CeEEEEccCCcCCh
Q 025519 191 SRVMIIDLDAHQGN 204 (251)
Q Consensus 191 ~rV~IiD~DvHhGn 204 (251)
+||++||+|. +||
T Consensus 147 ~rVlliD~D~-~~~ 159 (403)
T 3ez9_A 147 LRILVIDLDP-QAS 159 (403)
T ss_dssp CCEEEEEESS-SSG
T ss_pred CeEEEEeCCC-CCC
Confidence 7999999999 565
No 37
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=24.73 E-value=48 Score=29.32 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=16.5
Q ss_pred hCCCCeEEEEccCCcCChhhhHhhhCC
Q 025519 187 QLNISRVMIIDLDAHQGNGHEKDFSSD 213 (251)
Q Consensus 187 ~~~~~rV~IiD~DvHhGnGtq~if~~d 213 (251)
+.| +||++||.|.. +| ...+|.-+
T Consensus 46 ~~G-~rVLLvD~D~~-~~-l~~~lg~~ 69 (354)
T 2woj_A 46 QPN-KQFLLISTDPA-HN-LSDAFGEK 69 (354)
T ss_dssp CTT-SCEEEEECCSS-CC-HHHHHTSC
T ss_pred cCC-CeEEEEECCCC-CC-HHHHhCCC
Confidence 444 79999999994 43 55566543
No 38
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=22.80 E-value=1.2e+02 Score=26.54 Aligned_cols=23 Identities=17% Similarity=0.405 Sum_probs=16.2
Q ss_pred hCCCCeEEEEccCCcCChhhhHhhhC
Q 025519 187 QLNISRVMIIDLDAHQGNGHEKDFSS 212 (251)
Q Consensus 187 ~~~~~rV~IiD~DvHhGnGtq~if~~ 212 (251)
+.| +||++||+|-- .+....|..
T Consensus 42 ~~g-~~vllid~D~~--~~l~~~l~~ 64 (334)
T 3iqw_A 42 KVR-RSVLLLSTDPA--HNLSDAFSQ 64 (334)
T ss_dssp TSS-SCEEEEECCSS--CHHHHHHTS
T ss_pred hCC-CcEEEEECCCC--CChhHHhcc
Confidence 444 89999999953 356667754
Done!