RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 025519
(251 letters)
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme,
arginase fold, HDAC8, histon deacetylase, hydroxamate
inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens}
PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A*
2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A*
1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Length = 388
Score = 124 bits (314), Expect = 7e-34
Identities = 55/198 (27%), Positives = 84/198 (42%), Gaps = 12/198 (6%)
Query: 37 LIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE 96
IYSP+Y + + + + + + + IV+P AS E++ H++
Sbjct: 18 YIYSPEY----VSMCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTD 73
Query: 97 SYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAK--LAKERGW 152
+YL+ LQ S + L C + G TI AA+ +
Sbjct: 74 AYLQHLQKVSQEGDDDHPDSIEYGLGYLCPATEGIFDYAAAIGGATITAAQCLIDGMCKV 133
Query: 153 AINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSS 212
AIN GG+HH DE GFC D L I + R++ +DLD H G+G E FS
Sbjct: 134 AINWSGGWHHAKKDEASGFCYLNDAVLGILRL--RRKFERILYVDLDLHHGDGVEDAFSF 191
Query: 213 DSRVYILD--MFNPGIYP 228
S+V + F+PG +P
Sbjct: 192 TSKVMTVSLHKFSPGFFP 209
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta
fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2
PDB: 1c3r_A* 1c3s_A*
Length = 375
Score = 117 bits (295), Expect = 4e-31
Identities = 45/206 (21%), Positives = 82/206 (39%), Gaps = 26/206 (12%)
Query: 37 LIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE 96
LI + DY HP + + +F + +D+ +++ A+KE+LL+ H+E
Sbjct: 6 LIGTLDYGKYRYPKN--HPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFHTE 63
Query: 97 SYLKSLQSSPNVSIIIEVP-----------PVALFPNCLVQRKVLYPF-RKQVGGTILAA 144
Y+ +L + + + PV ++ G T+ A
Sbjct: 64 DYINTLMEAERCQCVPKGAREKYNIGGYENPV--SYA-------MFTGSSLATGSTVQAI 114
Query: 145 KLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGN 204
+ + A N GG HH GFC + ++ I Y + R++ IDLDAH +
Sbjct: 115 EEFLKGNVAFNPAGGMHHAFKSRANGFCYINNPAVGIEYL-RKKGFKRILYIDLDAHHCD 173
Query: 205 GHEKDFSSDSRVYILD--MFNPGIYP 228
G ++ F +V++L +P
Sbjct: 174 GVQEAFYDTDQVFVLSLHQSPEYAFP 199
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase;
HET: LLX NHE; 2.05A {Homo sapiens}
Length = 367
Score = 114 bits (287), Expect = 4e-30
Identities = 50/185 (27%), Positives = 78/185 (42%), Gaps = 9/185 (4%)
Query: 37 LIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE 96
Y D + G + HP + L + G K I P +A+ E++ HS+
Sbjct: 7 YYYDGDIGNYYYG--QGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKYHSD 64
Query: 97 SYLKSLQS-SPN--VSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAK--LAKERG 151
Y+K L+S P+ ++ + +C V + + GG++ A ++
Sbjct: 65 EYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTD 124
Query: 152 WAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFS 211
A+N GG HH E GFC DI L I RV+ ID+D H G+G E+ F
Sbjct: 125 MAVNWAGGLHHAKKSEASGFCYVNDIVLAILEL--LKYHQRVLYIDIDIHHGDGVEEAFY 182
Query: 212 SDSRV 216
+ RV
Sbjct: 183 TTDRV 187
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A
{Homo sapiens}
Length = 376
Score = 111 bits (280), Expect = 4e-29
Identities = 50/199 (25%), Positives = 75/199 (37%), Gaps = 11/199 (5%)
Query: 37 LIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSE 96
Y PD G HP + + G K + +P +AS+ D+ HSE
Sbjct: 7 YFYDPDVGNFHYG--AGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSE 64
Query: 97 SYLKSLQSSPNVSIIIEVPPVALF---PNCLVQRKVLYPFRKQVGGTILAAK--LAKERG 151
Y+ LQ ++ + F +C V + + G ++ A K
Sbjct: 65 DYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICD 124
Query: 152 WAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFS 211
AIN GG HH E GFC DI + I RV+ ID+D H G+G ++ F
Sbjct: 125 IAINWAGGLHHAKKFEASGFCYVNDIVIGILEL--LKYHPRVLYIDIDIHHGDGVQEAFY 182
Query: 212 SDSRVYILDM--FNPGIYP 228
RV + + +P
Sbjct: 183 LTDRVMTVSFHKYGNYFFP 201
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural
genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens}
PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A*
2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Length = 421
Score = 86.4 bits (214), Expect = 1e-19
Identities = 51/249 (20%), Positives = 85/249 (34%), Gaps = 40/249 (16%)
Query: 2 SSSSSPSVTTDAETLKRNRILSSKLYFDIPIFKLPLIYSPDYD--ISFLGIEKLHPFDSS 59
S ++ S++ + + SS+ F LIY G HP +
Sbjct: 5 SPAAPASLSAPEPASQARVLSSSETPARTLPFTTGLIYDSVMLKHQCSCGDNSRHPEHAG 64
Query: 60 KWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVAL 119
+ I L G + + +AS E+L VHSE ++ ++P + ++ +A
Sbjct: 65 RIQSIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPLSRLKLDNGKLAG 124
Query: 120 FPNCLVQRKVLYPFRKQVGGTIL-------AAKLAKERGWAINVGG-------------- 158
+ + TI AA+ A G
Sbjct: 125 LLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWA--------AGSVTDLAFKVASRELK 176
Query: 159 -GF-------HHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDF 210
GF HH GFC + +++ Q S+++I+D D H GNG ++ F
Sbjct: 177 NGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTF 236
Query: 211 SSDSRV-YI 218
D V YI
Sbjct: 237 YQDPSVLYI 245
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold,
deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N;
2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Length = 341
Score = 79.8 bits (197), Expect = 1e-17
Identities = 39/185 (21%), Positives = 63/185 (34%), Gaps = 36/185 (19%)
Query: 63 RICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPN 122
I + GF D +V P E +L VH YL L+++ + A+ +
Sbjct: 35 WILAAVKEAGFDD---VVAPARHGLETVLKVHDAGYLNFLETAWDRWKAAGYKGEAIATS 91
Query: 123 CLVQRKVLYPFRKQVG---------------GTILAAKLAKERGWAIN----VGGGF--- 160
V+R G GT AA + AI+ + G
Sbjct: 92 FPVRRTSPRIPTDIEGQIGYYCNAAETAISPGTWEAALSSM--ASAIDGADLIAAGHKAA 149
Query: 161 --------HHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSS 212
HH D GG+C + ++ + ++ I+D+D H GNG + F
Sbjct: 150 FSLCRPPGHHAGIDMFGGYCFINNAAVAAQRL-LDKGAKKIAILDVDFHHGNGTQDIFYE 208
Query: 213 DSRVY 217
V+
Sbjct: 209 RGDVF 213
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A
{Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A*
2vcg_A*
Length = 369
Score = 79.3 bits (196), Expect = 2e-17
Identities = 35/173 (20%), Positives = 69/173 (39%), Gaps = 15/173 (8%)
Query: 63 RICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFPN 122
R + + + G ++ + + A+ D+L HS ++L++++ N +
Sbjct: 45 RFHELVCASGQIEHLTPIAAVAATDADILRAHSAAHLENMKRVSN----LPTGGDTGDGI 100
Query: 123 CLVQRKVLYPFRKQVGGTILAAKLAKERGWAINVGGGF-------HHCSADEGGGFCAYA 175
++ L R GG + + + G+ HH + GFC +
Sbjct: 101 TMMGNGGLEIARLSAGGAVELTRRVATG----ELSAGYALVNPPGHHAPHNAAMGFCIFN 156
Query: 176 DISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYP 228
+ S+ YA L + RV I+D D H GNG + + +D V + + +P
Sbjct: 157 NTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHLCFP 209
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A
{Burkholderia pseudomallei 1710B}
Length = 362
Score = 74.8 bits (184), Expect = 7e-16
Identities = 39/217 (17%), Positives = 67/217 (30%), Gaps = 44/217 (20%)
Query: 38 IYSPDY------DISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLL 91
+ PD G ++ + R+ + GF + EP + +
Sbjct: 25 YFHPDQSLHHPRTYFSRGRMRMPQEVPERAARLVAAAFAMGFP----VREPDDFGIAPIA 80
Query: 92 VVHSESYLKSLQS-SPNVSIIIEVPPVALFPNCLVQR-KVLYPFRKQVG----------- 138
VH YL+ L++ + E N V+ L Q
Sbjct: 81 AVHDTHYLRFLETVHREWKAMPEDWGDEAMSNIFVREPNALRGVLAQAARHLADGSCPVG 140
Query: 139 -GTILAAKLAKERGWAI--------NVGGGF-------HHCSADEGGGFCAYADISLCIH 182
T AA + A+ + HH D GGFC + ++
Sbjct: 141 EHTWRAAYWSA--QSALAAAAAVRDGAPAAYALCRPPGHHARVDAAGGFCYLNNAAIAAQ 198
Query: 183 YAFVQLNISRVMIIDLDAHQGNGHEKDFSSDSRV-YI 218
+ +RV ++D D H G G ++ F + V Y+
Sbjct: 199 AL--RARHARVAVLDTDMHHGQGIQEIFYARRDVLYV 233
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.001
Identities = 45/289 (15%), Positives = 92/289 (31%), Gaps = 103/289 (35%)
Query: 27 YFDIPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEAS 86
YF+ +L +Y Y H + + I L+A
Sbjct: 169 YFE----ELRDLYQ-TY----------HVL-------VGDLIKFSAETLSELIRTTLDAE 206
Query: 87 KEDLLVVHSESYLKSLQSSPNVSIIIEVPPVALFP-NCLVQ-------RKVL--YP--FR 134
K ++ +L++ ++P+ ++ +P ++ P ++Q K+L P R
Sbjct: 207 KVFTQGLNILEWLENPSNTPDKDYLLSIP-IS-CPLIGVIQLAHYVVTAKLLGFTPGELR 264
Query: 135 KQVGGT-------ILAAKLAKERGWAINVGGGFHHCSADEG-------GGFC--AYADIS 178
+ G + A +A+ W F S + G C AY + S
Sbjct: 265 SYLKGATGHSQGLVTAVAIAETDSWE-----SF-FVSVRKAITVLFFIGVRCYEAYPNTS 318
Query: 179 LCIHYAFVQ-------------LNISRVMIIDLDAH--QGNGHEKDFSSDSRVYI----- 218
L + ++ L+IS + + + + N H + +V I
Sbjct: 319 LPP--SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH---LPAGKQVEISLVNG 373
Query: 219 ------------LDMFNPGIYPRDYEARRFIDQ-KVE-----VVVNNQY 249
L N + R +A +DQ ++ + +N++
Sbjct: 374 AKNLVVSGPPQSLYGLNLTL--RKAKAPSGLDQSRIPFSERKLKFSNRF 420
Score = 33.9 bits (77), Expect = 0.049
Identities = 43/246 (17%), Positives = 69/246 (28%), Gaps = 88/246 (35%)
Query: 43 YDISFLGIEKLHP------FDSSKWGRICQ---FLSSEGFLDKNCIVEPL-EASKEDLLV 92
Y S L I +P F K RI + + E +D E + + E
Sbjct: 1657 YGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS 1716
Query: 93 V---HSESYLKSLQSS-P---NVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGG------ 139
+ L + Q + P + A F ++ K L P G
Sbjct: 1717 YTFRSEKGLLSATQFTQPALTLME-------KAAF--EDLKSKGLIPADATFAGHSLGEY 1767
Query: 140 TILAA-----------KLAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQL 188
LA+ ++ RG + DE G +Y + +
Sbjct: 1768 AALASLADVMSIESLVEVVFYRGMTMQ-----VAVPRDELGR----------SNYGMIAI 1812
Query: 189 NISRVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYEARRFIDQKVEVVVN-N 247
N RV FS ++ Y+++ + VE +VN N
Sbjct: 1813 NPGRV-------------AASFSQEALQYVVE-----------RVGKRTGWLVE-IVNYN 1847
Query: 248 ----QY 249
QY
Sbjct: 1848 VENQQY 1853
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.012
Identities = 32/291 (10%), Positives = 81/291 (27%), Gaps = 98/291 (33%)
Query: 8 SVTTDAET----LKRNRILSSKLYFDIPIFKLPLIY--------SPDYDISFLGIEKLHP 55
S+ + E + ++ + + F + K + +Y FL + +
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK--FL-MSPIKT 100
Query: 56 FDSSKWGRICQFLSSEGFL-DKNCIVEPLEASKEDLLVVHSESYLKSLQSSPNVSIIIEV 114
++ L + N + S+ + ++ L L+ + NV
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA-LLELRPAKNV------ 153
Query: 115 PPVALFPNCLVQRKVLYPFRKQVGG---TILAAKLAKERG----------WAINVGGGFH 161
++ V G T +A + W +N+
Sbjct: 154 --------------LID----GVLGSGKTWVALDVCLSYKVQCKMDFKIFW-LNLK---- 190
Query: 162 HCSADEG-------------GGFCAYADISLCIHYAF--VQLNISRVM--------IIDL 198
+C++ E + + +D S I +Q + R++ ++ L
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 199 DAHQGNGHEKDFSSDSRVYILDMFNPG----IYPRDYEARRFIDQKVEVVV 245
+ +++ + FN + R + F+ +
Sbjct: 251 L---------NV-QNAK--AWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289
Score = 34.4 bits (78), Expect = 0.031
Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 25/84 (29%)
Query: 83 LEASKEDLLVVHSESYLKSLQSSPNVSIIIEVPPVA-----LF------PNCLVQR---K 128
+A ++ + KS+ S + II LF +VQ+ +
Sbjct: 26 EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE 85
Query: 129 VL---YPFRKQVGGTILAAKLAKE 149
VL Y F L + + E
Sbjct: 86 VLRINYKF--------LMSPIKTE 101
Score = 33.7 bits (76), Expect = 0.062
Identities = 50/320 (15%), Positives = 98/320 (30%), Gaps = 108/320 (33%)
Query: 2 SSSSSPSVTTDAETLKRNRILSSKLY------------------FDI--PIFKLPLIYSP 41
SS+ + + + R+L SK Y F++ I L+ +
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI----LLTTR 273
Query: 42 DYDIS-FL-GIEKLHPF-DSSKWGRICQFLSSE--GFLDK--NCIVE--PLEASKEDLLV 92
++ FL H D E L K +C + P E +
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMT----LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 93 V------------HSESYLKSLQSSPNVSIIIEV------PP--------VALFP-NCLV 125
+ +++ + ++ IIE P +++FP + +
Sbjct: 330 LSIIAESIRDGLATWDNWKHV--NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 126 QRKVL----YPFRKQVGGTI--------LAAKLAKERGWAINVGGGFHHCSADEGGGFCA 173
+L + K + L K KE +I +
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI------PSIYLE----LKV 437
Query: 174 YADISLCIHYAFV-QLNISR------VMIIDLD----AHQGNGHEKDFSSDSRVYILDMF 222
+ +H + V NI + ++ LD +H G+ H K+ R+ +F
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH-HLKNIEHPERM---TLF 493
Query: 223 NPGIYPRDYEARRFIDQKVE 242
++ D+ RF++QK+
Sbjct: 494 -RMVF-LDF---RFLEQKIR 508
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.13
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 13/31 (41%)
Query: 12 DAETLKRNRILSSKLYFDIPIFKLPLIYSPD 42
+ + LK+ L + L KL Y+ D
Sbjct: 18 EKQALKK---LQASL-------KL---YADD 35
Score = 28.8 bits (63), Expect = 1.2
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 12/33 (36%)
Query: 99 LKSLQSS-----PNVSIIIEVPPVALFPNCLVQ 126
LK LQ+S + P +A+ ++
Sbjct: 22 LKKLQASLKLYADD-----SAPALAI--KATME 47
Score = 28.0 bits (61), Expect = 2.0
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 17/43 (39%)
Query: 75 DKNCIVEPLEASKEDLLVVHSESYLK--SLQSSPNVSI--IIE 113
+K + + L+AS LK + S+P ++I +E
Sbjct: 18 EKQAL-KKLQAS------------LKLYADDSAPALAIKATME 47
>2xoa_A Ryanodine receptor 1; metal transport, calcium channel, ION
channel, membrane PROT malignant hyperthermia, cardiac
arrhythmia; 2.50A {Oryctolagus cuniculus}
Length = 559
Score = 27.2 bits (59), Expect = 6.1
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 67 FLSSEGFLDKNCIVEP 82
L++EGF ++ C +EP
Sbjct: 36 CLAAEGFGNRLCFLEP 51
>1nsl_A Probable acetyltransferase; structural genomics, hexamer,
alpha-beta, PSI, protein struc initiative, midwest
center for structural genomics; 2.70A {Bacillus
subtilis} SCOP: d.108.1.1
Length = 184
Score = 26.5 bits (59), Expect = 7.1
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 168 GGGFCAYADISLCIHYAFVQLNISRVMI 195
G G A I YAF +L ++RV I
Sbjct: 107 GKGIITAA-CRKLITYAFEELELNRVAI 133
>1xzz_A Inositol 1,4,5-trisphosphate receptor type 1; IP3 receptor, IP3
receptor suppressor domain, calcium channe trefoil
fold, membrane protein; 1.80A {Mus musculus} PDB:
3jrr_A
Length = 246
Score = 26.3 bits (57), Expect = 8.5
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 62 GRICQFLSSEGFLDKNCIVEPLEASKED 89
G F+S+ G +D C+V+P +
Sbjct: 36 GSTNGFISTLGLVDDRCVVQPEAGDLNN 63
>2e5f_A Hypothetical protein PH0510; structural genomics, sugar binding
protein, NPPSFA, national on protein structural and
functional analyses; 1.35A {Pyrococcus horikoshii} PDB:
2dec_A* 2df8_A 2cb0_A*
Length = 325
Score = 26.7 bits (60), Expect = 8.9
Identities = 3/19 (15%), Positives = 6/19 (31%)
Query: 140 TILAAKLAKERGWAINVGG 158
+LA + + I
Sbjct: 95 ILLALEKINVKKLGITTRE 113
>3uj4_A Inositol 1,4,5-trisphosphate receptor type 1; APO-state,
suppressor domain, binding core domain, signaling
protein; 3.00A {Rattus norvegicus} PDB: 3uj0_A 3t8s_A*
Length = 604
Score = 26.5 bits (57), Expect = 9.8
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 62 GRICQFLSSEGFLDKNCIVEPLEASKED 89
G F+S+ G +D +V+P +
Sbjct: 21 GSTNGFISTLGLVDDRAVVQPEAGDLNN 48
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.416
Gapped
Lambda K H
0.267 0.0705 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,916,286
Number of extensions: 235462
Number of successful extensions: 556
Number of sequences better than 10.0: 1
Number of HSP's gapped: 542
Number of HSP's successfully gapped: 30
Length of query: 251
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 160
Effective length of database: 4,160,982
Effective search space: 665757120
Effective search space used: 665757120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.4 bits)