RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 025519
(251 letters)
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId:
63363]}
Length = 372
Score = 92.6 bits (229), Expect = 2e-22
Identities = 46/202 (22%), Positives = 84/202 (41%), Gaps = 6/202 (2%)
Query: 34 KLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVV 93
K+ LI + DY HP + + +F + +D+ +++ A+KE+LL+
Sbjct: 2 KVKLIGTLDYGKYRYPKN--HPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLF 59
Query: 94 HSESYLKSLQSSPNVSIIIEVPPVALFP---NCLVQRKVLYPFRKQVGGTILAAKLAKER 150
H+E Y+ +L + + + V + G T+ A + +
Sbjct: 60 HTEDYINTLMEAERCQCVPKGAREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKG 119
Query: 151 GWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHEKDF 210
A N GG HH GFC + ++ I Y + R++ IDLDAH +G ++ F
Sbjct: 120 NVAFNPAGGMHHAFKSRANGFCYINNPAVGIEYLR-KKGFKRILYIDLDAHHCDGVQEAF 178
Query: 211 SSDSRVYILDMFNPGIYPRDYE 232
+V++L + Y +E
Sbjct: 179 YDTDQVFVLSLHQSPEYAFPFE 200
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 364
Score = 79.8 bits (196), Expect = 6e-18
Identities = 52/198 (26%), Positives = 84/198 (42%), Gaps = 14/198 (7%)
Query: 30 IPIFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKED 89
+P++ IYSP+Y + + + + + + + IV+P AS E+
Sbjct: 2 VPVY----IYSPEY----VSMCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEE 53
Query: 90 LLVVHSESYLKSLQ--SSPNVSIIIEVPPVALFPNCLVQRKVLYPFRKQVGGTILAAK-- 145
+ H+++YL+ LQ S + L +C + G TI AA+
Sbjct: 54 MATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYDCPATEGIFDYAAAIGGATITAAQCL 113
Query: 146 LAKERGWAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRVMIIDLDAHQGNG 205
+ AIN GG+HH DE GFC D L I + R++ +DLD H G+G
Sbjct: 114 IDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRL--RRKFERILYVDLDLHHGDG 171
Query: 206 HEKDFSSDSRVYILDMFN 223
E FS S+V + +
Sbjct: 172 VEDAFSFTSKVMTVSLHK 189
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 386
Score = 75.0 bits (183), Expect = 3e-16
Identities = 38/219 (17%), Positives = 70/219 (31%), Gaps = 23/219 (10%)
Query: 37 LIYSPDYD--ISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVH 94
LIY G HP + + I L G + + +AS E+L VH
Sbjct: 8 LIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVH 67
Query: 95 SESYLKSLQSSP-----------------NVSIIIEVPPVALFPNCLVQRKVLYPFRKQV 137
SE ++ ++P + +++ V + + + +
Sbjct: 68 SERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWA 127
Query: 138 GGTILAAKLAKERG----WAINVGGGFHHCSADEGGGFCAYADISLCIHYAFVQLNISRV 193
G++ V HH GFC + +++ Q S++
Sbjct: 128 AGSVTDLAFKVASRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQQSKASKI 187
Query: 194 MIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDYE 232
+I+D D H GNG ++ F D V + +
Sbjct: 188 LIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPG 226
>d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter
amalonaticus [TaxId: 35703]}
Length = 251
Score = 28.4 bits (63), Expect = 0.80
Identities = 6/47 (12%), Positives = 12/47 (25%), Gaps = 7/47 (14%)
Query: 136 QVGG---TILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISL 179
+GG + A + G G + ++L
Sbjct: 174 DLGGIHNIVDAVLYCNKHGMEAYQG----GTCNETEISARTCVHVAL 216
>d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium
tetanomorphum [TaxId: 1553]}
Length = 253
Score = 26.9 bits (59), Expect = 2.2
Identities = 6/43 (13%), Positives = 9/43 (20%), Gaps = 4/43 (9%)
Query: 137 VGGTILAAKLAKERGWAINVGGGFHHCSADEGGGFCAYADISL 179
V A K G G + +I +
Sbjct: 178 VNNIADAIMYCKANGMGAYCG----GTCNETNRSAEVTTNIGM 216
>d1m0sa1 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate
isomerase (RpiA), catalytic domain {Haemophilus
influenzae [TaxId: 727]}
Length = 147
Score = 26.3 bits (57), Expect = 2.5
Identities = 11/79 (13%), Positives = 27/79 (34%), Gaps = 9/79 (11%)
Query: 41 PDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCIVEPLEASKEDLLVVHSESYLK 100
DI G ++++P + + + +K +K+ + +V S +
Sbjct: 74 SSLDIYVDGADEINPQK-----MMIKGGGAALTREKIVA----ALAKKFICIVDSSKQVD 124
Query: 101 SLQSSPNVSIIIEVPPVAL 119
L + ++I P
Sbjct: 125 VLFALRGADVVIVGTPEGA 143
>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 237
Score = 25.0 bits (53), Expect = 8.3
Identities = 8/40 (20%), Positives = 13/40 (32%)
Query: 192 RVMIIDLDAHQGNGHEKDFSSDSRVYILDMFNPGIYPRDY 231
+V+ +D D N D V + D+ D
Sbjct: 33 KVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDA 72
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 25.1 bits (54), Expect = 9.0
Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 16/83 (19%)
Query: 32 IFKLPLIYSPDYDISFLGIEKLHPFDSSKWGRICQFLSSEGFLDKNCI---VEPLEASKE 88
+ KL I+ +DI F +E LSS + +K + L S
Sbjct: 51 VCKLLFIFLLGHDIDFGHME------------AVNLLSSNRYTEKQIGYLFISVLVNSNS 98
Query: 89 DLLVVHSESYLKSLQSSPNVSII 111
+L+ + + + L S N + +
Sbjct: 99 ELIRLINNAIKNDLA-SRNPTFM 120
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.416
Gapped
Lambda K H
0.267 0.0446 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 968,383
Number of extensions: 45436
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 8
Length of query: 251
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 168
Effective length of database: 1,268,006
Effective search space: 213025008
Effective search space used: 213025008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.5 bits)