Query 025520
Match_columns 251
No_of_seqs 137 out of 1234
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 06:40:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025520.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025520hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11914 diacylglycerol kinase 100.0 1.7E-39 3.6E-44 290.7 22.4 188 45-248 7-197 (306)
2 PRK00861 putative lipid kinase 100.0 3.1E-39 6.8E-44 288.2 21.7 182 46-249 2-185 (300)
3 PRK13059 putative lipid kinase 100.0 1.7E-38 3.6E-43 283.0 22.2 184 46-249 1-186 (295)
4 PRK13337 putative lipid kinase 100.0 2.2E-38 4.7E-43 283.4 22.5 185 46-249 1-187 (304)
5 PRK13055 putative lipid kinase 100.0 2.4E-38 5.2E-43 286.5 21.8 185 46-249 2-191 (334)
6 COG1597 LCB5 Sphingosine kinas 100.0 4.4E-38 9.6E-43 280.7 19.9 186 45-250 1-190 (301)
7 PLN02958 diacylglycerol kinase 100.0 2.7E-37 5.8E-42 291.0 22.3 190 43-243 108-303 (481)
8 PRK13057 putative lipid kinase 100.0 4.6E-37 9.9E-42 272.7 21.0 176 50-249 1-178 (287)
9 TIGR03702 lip_kinase_YegS lipi 100.0 8.9E-37 1.9E-41 271.6 21.7 182 48-248 1-184 (293)
10 PRK13054 lipid kinase; Reviewe 100.0 9.2E-37 2E-41 272.4 21.7 184 46-249 3-189 (300)
11 PLN02204 diacylglycerol kinase 100.0 3.5E-36 7.7E-41 284.4 23.2 205 42-249 155-431 (601)
12 TIGR00147 lipid kinase, YegS/R 100.0 5.1E-36 1.1E-40 266.5 22.6 185 46-249 1-188 (293)
13 PRK12361 hypothetical protein; 100.0 1.8E-35 3.9E-40 283.6 20.4 180 45-246 241-426 (547)
14 KOG1116 Sphingosine kinase, in 100.0 1.5E-33 3.2E-38 262.4 15.3 198 39-245 172-373 (579)
15 PF00781 DAGK_cat: Diacylglyce 99.9 1E-26 2.2E-31 183.3 14.8 127 48-188 1-129 (130)
16 KOG1115 Ceramide kinase [Lipid 99.9 8.5E-25 1.8E-29 195.3 9.1 198 43-243 155-361 (516)
17 smart00046 DAGKc Diacylglycero 99.9 8.9E-23 1.9E-27 159.8 10.1 106 50-170 1-106 (124)
18 KOG1169 Diacylglycerol kinase 99.9 1.3E-21 2.8E-26 185.0 13.9 177 40-230 265-477 (634)
19 KOG0782 Predicted diacylglycer 99.9 1.2E-21 2.5E-26 181.2 12.4 193 38-247 357-584 (1004)
20 KOG4435 Predicted lipid kinase 99.8 2.5E-19 5.5E-24 160.2 13.5 204 25-243 37-254 (535)
21 PRK03708 ppnK inorganic polyph 99.1 1.5E-09 3.2E-14 96.1 11.2 134 48-202 2-140 (277)
22 PRK02645 ppnK inorganic polyph 99.0 2.5E-09 5.4E-14 95.9 10.2 115 45-178 2-117 (305)
23 COG3199 Predicted inorganic po 98.9 7.6E-09 1.7E-13 92.3 9.2 74 89-176 84-157 (355)
24 KOG1170 Diacylglycerol kinase 98.9 8.5E-10 1.8E-14 106.5 2.8 126 44-186 192-323 (1099)
25 PRK01231 ppnK inorganic polyph 98.6 3.9E-07 8.4E-12 81.4 10.3 114 45-178 3-120 (295)
26 PRK03378 ppnK inorganic polyph 98.6 2.8E-07 6.1E-12 82.2 9.4 112 44-178 3-121 (292)
27 PF01513 NAD_kinase: ATP-NAD k 98.3 4.8E-07 1E-11 80.4 4.7 112 48-179 1-135 (285)
28 PRK02155 ppnK NAD(+)/NADH kina 98.2 9.6E-06 2.1E-10 72.4 10.4 114 45-178 4-121 (291)
29 PRK14077 pnk inorganic polypho 98.1 1.8E-05 3.8E-10 70.5 10.2 110 45-177 9-121 (287)
30 PRK03372 ppnK inorganic polyph 98.1 2.4E-05 5.2E-10 70.2 10.7 114 44-178 3-130 (306)
31 PRK02649 ppnK inorganic polyph 98.1 2.2E-05 4.7E-10 70.5 10.3 111 46-178 1-126 (305)
32 PRK03501 ppnK inorganic polyph 98.0 7.6E-05 1.7E-09 65.7 11.8 121 46-202 2-125 (264)
33 PRK04539 ppnK inorganic polyph 98.0 6.8E-05 1.5E-09 67.1 11.1 114 45-178 4-126 (296)
34 PRK01911 ppnK inorganic polyph 97.9 9.5E-05 2.1E-09 66.0 10.4 110 48-178 2-122 (292)
35 PLN02935 Bifunctional NADH kin 97.8 0.00017 3.6E-09 68.3 10.9 115 45-178 193-320 (508)
36 PRK14076 pnk inorganic polypho 97.8 0.00026 5.7E-09 68.8 11.6 115 43-178 287-406 (569)
37 PRK04885 ppnK inorganic polyph 97.8 0.0002 4.4E-09 63.0 9.8 119 48-203 2-126 (265)
38 PRK00561 ppnK inorganic polyph 97.7 0.00048 1E-08 60.4 11.6 84 104-203 32-116 (259)
39 PRK01185 ppnK inorganic polyph 97.5 0.00079 1.7E-08 59.5 10.2 105 48-178 2-107 (271)
40 smart00045 DAGKa Diacylglycero 97.5 2.4E-05 5.2E-10 63.6 0.3 54 196-249 2-69 (160)
41 PLN02727 NAD kinase 97.5 0.00055 1.2E-08 68.7 9.7 112 43-177 675-800 (986)
42 PRK04761 ppnK inorganic polyph 97.4 0.0016 3.4E-08 56.8 9.7 60 105-178 25-84 (246)
43 PRK14075 pnk inorganic polypho 97.4 0.0033 7.1E-08 55.1 11.8 118 48-202 2-121 (256)
44 COG0061 nadF NAD kinase [Coenz 97.1 0.0039 8.4E-08 55.4 9.7 61 104-179 54-114 (281)
45 PF00609 DAGK_acc: Diacylglyce 96.7 0.0012 2.6E-08 53.7 3.1 56 195-250 1-70 (161)
46 PLN02929 NADH kinase 96.7 0.0046 9.9E-08 55.4 6.8 61 104-178 63-139 (301)
47 PRK02231 ppnK inorganic polyph 96.6 0.006 1.3E-07 54.0 6.7 59 104-177 41-100 (272)
48 KOG2178 Predicted sugar kinase 94.6 0.24 5.2E-06 45.7 9.0 59 104-177 167-225 (409)
49 cd08173 Gro1PDH Sn-glycerol-1- 93.5 0.56 1.2E-05 42.6 9.4 87 47-152 26-112 (339)
50 cd08186 Fe-ADH8 Iron-containin 93.3 0.83 1.8E-05 42.3 10.3 107 46-158 26-145 (383)
51 cd07766 DHQ_Fe-ADH Dehydroquin 92.8 0.98 2.1E-05 40.7 9.8 89 46-151 23-113 (332)
52 cd08174 G1PDH-like Glycerol-1- 92.5 1.3 2.7E-05 40.2 10.1 86 46-154 25-111 (331)
53 PRK00843 egsA NAD(P)-dependent 92.2 1.3 2.7E-05 40.6 9.8 86 47-151 35-120 (350)
54 cd08187 BDH Butanol dehydrogen 92.2 1.2 2.7E-05 41.1 9.8 104 46-155 28-143 (382)
55 cd08194 Fe-ADH6 Iron-containin 92.2 1.5 3.2E-05 40.5 10.2 73 46-125 23-99 (375)
56 cd08185 Fe-ADH1 Iron-containin 92.0 1.6 3.4E-05 40.3 10.3 73 47-125 26-102 (380)
57 cd08551 Fe-ADH iron-containing 92.0 1.3 2.8E-05 40.6 9.6 74 46-126 23-100 (370)
58 cd08181 PPD-like 1,3-propanedi 91.9 1.6 3.5E-05 39.9 10.1 106 47-158 26-142 (357)
59 KOG4180 Predicted kinase [Gene 91.8 0.14 3.1E-06 45.9 3.0 63 105-179 105-169 (395)
60 cd08171 GlyDH-like2 Glycerol d 91.7 1.4 3.1E-05 40.1 9.5 84 47-150 23-110 (345)
61 cd08176 LPO Lactadehyde:propan 91.7 1.2 2.7E-05 41.0 9.1 104 47-157 29-144 (377)
62 cd08550 GlyDH-like Glycerol_de 91.6 1 2.2E-05 41.1 8.5 86 47-150 23-109 (349)
63 PTZ00286 6-phospho-1-fructokin 91.6 0.53 1.2E-05 44.7 6.7 69 92-168 163-234 (459)
64 cd08197 DOIS 2-deoxy-scyllo-in 91.3 2.4 5.1E-05 39.0 10.5 93 47-155 24-125 (355)
65 cd08170 GlyDH Glycerol dehydro 90.9 0.99 2.1E-05 41.1 7.7 90 47-154 23-115 (351)
66 cd08169 DHQ-like Dehydroquinat 90.7 2 4.3E-05 39.3 9.4 88 46-150 23-117 (344)
67 cd08195 DHQS Dehydroquinate sy 90.4 2.2 4.7E-05 38.9 9.4 90 45-150 23-119 (345)
68 PF13685 Fe-ADH_2: Iron-contai 90.4 1.1 2.4E-05 39.2 7.1 90 45-155 18-112 (250)
69 PRK09860 putative alcohol dehy 90.4 2.4 5.2E-05 39.3 9.7 107 46-159 31-149 (383)
70 cd08172 GlyDH-like1 Glycerol d 90.2 0.93 2E-05 41.3 6.8 84 47-150 24-108 (347)
71 PRK06830 diphosphate--fructose 90.2 0.59 1.3E-05 44.2 5.6 66 91-164 158-226 (443)
72 PLN02564 6-phosphofructokinase 89.7 0.68 1.5E-05 44.2 5.6 64 92-163 163-229 (484)
73 TIGR02482 PFKA_ATP 6-phosphofr 89.5 0.88 1.9E-05 40.9 5.9 54 92-158 78-131 (301)
74 cd00763 Bacterial_PFK Phosphof 89.4 1.3 2.9E-05 40.0 7.1 53 92-158 79-131 (317)
75 TIGR02483 PFK_mixed phosphofru 89.4 0.74 1.6E-05 41.8 5.4 58 92-163 81-141 (324)
76 cd00363 PFK Phosphofructokinas 89.0 1.5 3.2E-05 40.1 7.1 58 92-157 79-136 (338)
77 cd08191 HHD 6-hydroxyhexanoate 88.9 3.8 8.2E-05 37.9 9.9 73 47-126 23-99 (386)
78 cd08180 PDD 1,3-propanediol de 88.8 3 6.5E-05 37.7 9.0 96 47-155 23-124 (332)
79 cd08199 EEVS 2-epi-5-epi-valio 88.6 5.2 0.00011 36.7 10.5 88 45-150 25-122 (354)
80 cd08549 G1PDH_related Glycerol 88.6 4.3 9.3E-05 36.8 9.8 83 47-150 25-112 (332)
81 cd08182 HEPD Hydroxyethylphosp 88.2 5.4 0.00012 36.5 10.4 71 46-126 23-97 (367)
82 TIGR01357 aroB 3-dehydroquinat 88.2 5.1 0.00011 36.4 10.1 89 46-150 20-115 (344)
83 PRK00002 aroB 3-dehydroquinate 88.1 5.3 0.00011 36.6 10.2 87 46-150 31-126 (358)
84 PRK03202 6-phosphofructokinase 87.9 1.9 4E-05 39.1 6.9 52 92-157 80-131 (320)
85 PRK14071 6-phosphofructokinase 87.3 1.4 3E-05 40.7 5.8 58 93-163 95-155 (360)
86 cd08177 MAR Maleylacetate redu 86.9 1.4 3E-05 40.1 5.6 88 47-154 24-114 (337)
87 PRK10586 putative oxidoreducta 86.8 6.7 0.00015 36.1 10.1 88 47-155 35-123 (362)
88 cd00764 Eukaryotic_PFK Phospho 86.7 2.4 5.3E-05 42.8 7.5 64 93-157 85-158 (762)
89 PRK09423 gldA glycerol dehydro 86.6 3 6.5E-05 38.3 7.7 86 47-150 30-116 (366)
90 COG0205 PfkA 6-phosphofructoki 86.3 2.8 6E-05 38.4 7.1 50 95-157 84-133 (347)
91 PF00365 PFK: Phosphofructokin 85.7 1.1 2.3E-05 39.9 4.1 53 93-158 80-132 (282)
92 PF10254 Pacs-1: PACS-1 cytoso 85.6 5.8 0.00013 37.2 9.0 101 47-162 16-128 (414)
93 cd08175 G1PDH Glycerol-1-phosp 85.6 5.8 0.00013 36.1 9.0 85 46-151 23-113 (348)
94 PRK06555 pyrophosphate--fructo 85.3 2.5 5.4E-05 39.5 6.5 57 93-157 100-156 (403)
95 PRK14072 6-phosphofructokinase 85.3 2.9 6.4E-05 39.3 7.0 60 91-158 89-148 (416)
96 PLN02884 6-phosphofructokinase 84.6 2.6 5.7E-05 39.5 6.3 63 93-163 131-196 (411)
97 cd08193 HVD 5-hydroxyvalerate 83.8 9.8 0.00021 35.0 9.7 74 46-126 26-103 (376)
98 PLN02834 3-dehydroquinate synt 83.6 11 0.00024 35.6 10.1 49 92-151 147-198 (433)
99 cd00765 Pyrophosphate_PFK Phos 82.7 4.8 0.0001 39.2 7.4 60 92-159 153-212 (550)
100 PLN03028 pyrophosphate--fructo 82.6 2.7 5.8E-05 41.4 5.7 57 93-157 161-217 (610)
101 COG1454 EutG Alcohol dehydroge 82.5 12 0.00026 34.7 9.6 112 45-163 28-151 (377)
102 TIGR02478 6PF1K_euk 6-phosphof 81.9 4.6 9.9E-05 40.9 7.1 62 95-157 84-155 (745)
103 cd00764 Eukaryotic_PFK Phospho 81.9 4.9 0.00011 40.7 7.3 59 92-157 465-523 (762)
104 PF00731 AIRC: AIR carboxylase 81.9 9.6 0.00021 30.7 7.7 62 64-126 14-77 (150)
105 cd08192 Fe-ADH7 Iron-containin 81.4 10 0.00022 34.7 8.9 73 47-126 25-101 (370)
106 TIGR02477 PFKA_PPi diphosphate 81.2 5.5 0.00012 38.7 7.2 59 92-158 148-206 (539)
107 PRK06203 aroB 3-dehydroquinate 79.7 19 0.00042 33.5 10.1 92 46-150 42-145 (389)
108 cd06295 PBP1_CelR Ligand bindi 79.7 23 0.0005 30.1 10.1 79 45-126 2-84 (275)
109 TIGR02478 6PF1K_euk 6-phosphof 78.0 7.2 0.00016 39.5 7.1 59 92-157 465-523 (745)
110 cd08198 DHQS-like2 Dehydroquin 77.7 25 0.00054 32.6 10.1 93 46-151 30-134 (369)
111 cd06310 PBP1_ABC_sugar_binding 77.6 24 0.00052 29.9 9.6 74 48-126 1-79 (273)
112 cd06312 PBP1_ABC_sugar_binding 77.2 33 0.0007 29.2 10.3 63 64-126 13-79 (271)
113 PRK07085 diphosphate--fructose 77.0 4 8.7E-05 39.8 4.8 58 92-157 151-208 (555)
114 cd01536 PBP1_ABC_sugar_binding 76.8 31 0.00067 28.7 9.9 47 80-126 29-77 (267)
115 COG1646 Predicted phosphate-bi 75.9 9.1 0.0002 33.1 6.2 64 83-154 19-82 (240)
116 PLN02251 pyrophosphate-depende 75.6 10 0.00023 37.1 7.3 61 92-160 177-237 (568)
117 cd08183 Fe-ADH2 Iron-containin 75.5 6.9 0.00015 36.0 5.9 69 47-125 23-94 (374)
118 cd06341 PBP1_ABC_ligand_bindin 75.4 36 0.00079 30.1 10.4 80 45-128 131-211 (341)
119 cd06300 PBP1_ABC_sugar_binding 75.4 35 0.00075 28.9 10.0 35 92-126 47-82 (272)
120 cd06318 PBP1_ABC_sugar_binding 75.2 33 0.00071 29.2 9.8 74 49-126 2-77 (282)
121 cd08179 NADPH_BDH NADPH-depend 74.4 11 0.00024 34.7 6.9 73 47-125 24-100 (375)
122 TIGR01162 purE phosphoribosyla 73.6 26 0.00056 28.4 8.0 74 64-153 12-87 (156)
123 cd06282 PBP1_GntR_like_2 Ligan 73.6 46 0.00099 27.8 10.2 74 49-126 2-76 (266)
124 cd01537 PBP1_Repressors_Sugar_ 73.1 46 0.001 27.4 10.0 61 80-153 29-90 (264)
125 cd01538 PBP1_ABC_xylose_bindin 72.2 40 0.00088 29.0 9.7 63 64-126 12-77 (288)
126 PRK14021 bifunctional shikimat 72.0 23 0.0005 34.5 8.7 85 47-150 210-303 (542)
127 cd06305 PBP1_methylthioribose_ 71.9 46 0.001 28.0 9.9 59 66-127 18-78 (273)
128 PTZ00287 6-phosphofructokinase 70.7 8.1 0.00018 41.5 5.5 59 92-158 915-973 (1419)
129 cd06301 PBP1_rhizopine_binding 70.5 49 0.0011 27.9 9.8 74 48-126 1-78 (272)
130 PF00465 Fe-ADH: Iron-containi 69.8 7.1 0.00015 35.7 4.5 73 47-126 22-98 (366)
131 PRK10653 D-ribose transporter 69.8 63 0.0014 27.9 10.4 77 45-126 25-104 (295)
132 COG0371 GldA Glycerol dehydrog 69.7 29 0.00063 32.1 8.3 90 47-157 31-123 (360)
133 cd06321 PBP1_ABC_sugar_binding 69.7 57 0.0012 27.5 10.0 61 65-126 17-79 (271)
134 cd06278 PBP1_LacI_like_2 Ligan 69.2 66 0.0014 26.8 12.2 56 67-126 19-74 (266)
135 PRK10014 DNA-binding transcrip 69.0 77 0.0017 27.9 11.0 79 43-126 61-141 (342)
136 cd01540 PBP1_arabinose_binding 67.6 59 0.0013 27.7 9.7 58 66-126 18-76 (289)
137 cd06167 LabA_like LabA_like pr 66.8 24 0.00052 27.4 6.5 31 98-128 92-122 (149)
138 PTZ00468 phosphofructokinase f 66.8 18 0.00038 38.8 7.0 58 93-158 184-241 (1328)
139 PRK05637 anthranilate synthase 66.5 34 0.00074 28.8 7.7 60 46-121 1-60 (208)
140 KOG1170 Diacylglycerol kinase 66.3 1.9 4.1E-05 43.4 -0.1 55 195-249 614-682 (1099)
141 cd01539 PBP1_GGBP Periplasmic 66.1 57 0.0012 28.5 9.4 74 48-126 1-79 (303)
142 cd06289 PBP1_MalI_like Ligand- 66.0 78 0.0017 26.4 10.3 46 81-126 30-76 (268)
143 cd06319 PBP1_ABC_sugar_binding 65.3 69 0.0015 27.0 9.6 63 64-126 12-77 (277)
144 cd06315 PBP1_ABC_sugar_binding 65.1 87 0.0019 26.8 10.3 76 47-126 1-78 (280)
145 PRK10624 L-1,2-propanediol oxi 65.0 26 0.00057 32.3 7.3 106 46-158 30-149 (382)
146 cd08178 AAD_C C-terminal alcoh 64.9 19 0.00042 33.4 6.4 74 46-126 21-98 (398)
147 cd06335 PBP1_ABC_ligand_bindin 64.6 1E+02 0.0023 27.4 11.6 78 45-128 137-216 (347)
148 cd08190 HOT Hydroxyacid-oxoaci 64.3 29 0.00062 32.5 7.4 72 47-125 24-99 (414)
149 PRK11303 DNA-binding transcrip 63.6 99 0.0022 27.0 10.6 78 44-126 59-138 (328)
150 TIGR02638 lactal_redase lactal 62.9 30 0.00066 31.8 7.3 73 46-125 29-105 (379)
151 cd01391 Periplasmic_Binding_Pr 62.9 81 0.0018 25.5 9.9 47 80-126 32-79 (269)
152 cd06322 PBP1_ABC_sugar_binding 62.2 82 0.0018 26.4 9.5 63 64-126 12-77 (267)
153 COG1570 XseA Exonuclease VII, 62.0 69 0.0015 30.4 9.4 76 40-122 129-210 (440)
154 cd06299 PBP1_LacI_like_13 Liga 62.0 94 0.002 26.0 10.5 58 66-127 18-76 (265)
155 cd08189 Fe-ADH5 Iron-containin 62.0 30 0.00065 31.8 7.1 73 46-125 26-102 (374)
156 cd08196 DHQS-like1 Dehydroquin 60.9 68 0.0015 29.4 9.1 70 47-126 20-96 (346)
157 PF04392 ABC_sub_bind: ABC tra 60.6 51 0.0011 29.0 8.1 78 43-127 128-205 (294)
158 PLN02948 phosphoribosylaminoim 60.4 1.8E+02 0.0038 28.7 12.5 114 45-188 409-524 (577)
159 PTZ00468 phosphofructokinase f 60.3 24 0.00051 37.9 6.5 57 96-158 791-850 (1328)
160 cd06333 PBP1_ABC-type_HAAT_lik 60.3 1.1E+02 0.0025 26.4 11.7 79 44-128 131-211 (312)
161 PRK00536 speE spermidine synth 60.2 5.4 0.00012 35.1 1.7 18 107-124 75-93 (262)
162 cd00886 MogA_MoaB MogA_MoaB fa 60.1 46 0.001 26.4 7.0 47 69-116 25-72 (152)
163 smart00115 CASc Caspase, inter 60.1 82 0.0018 27.1 9.0 109 43-160 4-135 (241)
164 PF07015 VirC1: VirC1 protein; 60.0 95 0.0021 26.8 9.2 97 47-158 1-100 (231)
165 TIGR02417 fruct_sucro_rep D-fr 59.6 1.2E+02 0.0026 26.5 11.1 79 44-126 58-137 (327)
166 cd06324 PBP1_ABC_sugar_binding 59.5 1.1E+02 0.0024 26.6 10.0 63 64-126 13-79 (305)
167 PRK10355 xylF D-xylose transpo 59.3 1.3E+02 0.0028 26.8 11.3 78 45-127 24-104 (330)
168 PLN02335 anthranilate synthase 59.3 68 0.0015 27.3 8.3 66 41-121 13-78 (222)
169 COG1691 NCAIR mutase (PurE)-re 59.1 15 0.00032 31.8 4.0 53 102-175 169-222 (254)
170 cd08188 Fe-ADH4 Iron-containin 59.1 37 0.0008 31.3 7.1 73 46-125 28-104 (377)
171 cd06306 PBP1_TorT-like TorT-li 58.8 97 0.0021 26.3 9.4 74 48-126 1-78 (268)
172 cd06320 PBP1_allose_binding Pe 58.0 89 0.0019 26.4 9.0 74 48-126 1-79 (275)
173 PRK15454 ethanol dehydrogenase 57.9 37 0.0008 31.6 6.9 107 46-159 49-167 (395)
174 PRK15395 methyl-galactoside AB 57.6 1.4E+02 0.003 26.5 10.7 80 42-126 20-103 (330)
175 PF13458 Peripla_BP_6: Peripla 56.8 1.2E+02 0.0027 26.4 10.0 79 45-129 134-214 (343)
176 cd06349 PBP1_ABC_ligand_bindin 56.8 1.4E+02 0.003 26.3 11.4 79 45-129 134-214 (340)
177 cd06338 PBP1_ABC_ligand_bindin 56.7 1.4E+02 0.003 26.3 11.7 77 46-128 141-219 (345)
178 cd06268 PBP1_ABC_transporter_L 56.4 1.2E+02 0.0026 25.4 9.8 76 46-127 135-212 (298)
179 cd06304 PBP1_BmpA_like Peripla 56.3 1.2E+02 0.0027 25.5 9.9 65 48-115 1-66 (260)
180 COG2185 Sbm Methylmalonyl-CoA 56.3 1E+02 0.0022 24.6 10.0 87 83-175 41-135 (143)
181 PF06506 PrpR_N: Propionate ca 56.2 67 0.0014 26.1 7.5 66 45-124 76-141 (176)
182 cd06360 PBP1_alkylbenzenes_lik 55.9 1.2E+02 0.0026 26.5 9.7 78 45-128 133-212 (336)
183 TIGR00725 conserved hypothetic 55.8 17 0.00037 29.4 3.8 32 105-150 91-123 (159)
184 cd06348 PBP1_ABC_ligand_bindin 55.6 1.5E+02 0.0032 26.2 10.8 79 45-128 135-215 (344)
185 cd06316 PBP1_ABC_sugar_binding 55.4 1.2E+02 0.0026 26.0 9.5 33 95-127 46-79 (294)
186 cd06366 PBP1_GABAb_receptor Li 55.3 1.2E+02 0.0027 26.8 9.8 80 44-129 133-216 (350)
187 TIGR02667 moaB_proteo molybden 55.3 74 0.0016 25.7 7.5 41 86-126 43-89 (163)
188 cd06267 PBP1_LacI_sugar_bindin 55.2 1.1E+02 0.0024 25.2 8.9 46 80-126 29-75 (264)
189 TIGR00725 conserved hypothetic 54.1 30 0.00064 27.9 5.0 47 93-152 19-65 (159)
190 cd06323 PBP1_ribose_binding Pe 54.1 1.2E+02 0.0026 25.2 9.1 59 65-126 17-77 (268)
191 TIGR02955 TMAO_TorT TMAO reduc 54.1 1.4E+02 0.003 25.9 9.7 73 48-125 1-78 (295)
192 PF02601 Exonuc_VII_L: Exonucl 53.9 1.1E+02 0.0024 27.3 9.2 75 41-122 9-92 (319)
193 cd06296 PBP1_CatR_like Ligand- 53.8 1.3E+02 0.0029 25.1 10.9 73 49-126 2-75 (270)
194 cd02812 PcrB_like PcrB_like pr 53.3 50 0.0011 28.3 6.4 57 88-155 8-67 (219)
195 TIGR00730 conserved hypothetic 53.2 32 0.00068 28.4 5.1 46 92-151 19-66 (178)
196 PF01884 PcrB: PcrB family; I 52.7 67 0.0015 27.8 7.1 60 85-158 13-74 (230)
197 TIGR02634 xylF D-xylose ABC tr 52.3 1.5E+02 0.0033 25.8 9.7 65 63-127 10-77 (302)
198 cd01542 PBP1_TreR_like Ligand- 51.9 1.4E+02 0.003 24.8 10.5 57 66-126 18-75 (259)
199 cd00032 CASc Caspase, interleu 51.8 1.3E+02 0.0028 25.7 9.0 108 43-159 5-135 (243)
200 PF03575 Peptidase_S51: Peptid 51.8 47 0.001 26.3 5.8 45 67-117 3-47 (154)
201 cd06317 PBP1_ABC_sugar_binding 51.1 1.5E+02 0.0032 24.8 9.6 47 80-126 30-78 (275)
202 PRK15138 aldehyde reductase; P 51.1 40 0.00087 31.2 6.0 71 47-125 30-104 (387)
203 PTZ00287 6-phosphofructokinase 51.0 26 0.00055 37.9 5.0 58 92-157 258-315 (1419)
204 cd06334 PBP1_ABC_ligand_bindin 50.9 1.9E+02 0.0041 26.0 11.6 78 45-128 139-218 (351)
205 cd01545 PBP1_SalR Ligand-bindi 50.8 1.5E+02 0.0032 24.8 10.4 74 49-126 2-77 (270)
206 PF13407 Peripla_BP_4: Peripla 50.6 1.1E+02 0.0024 25.5 8.3 63 65-127 12-78 (257)
207 PF10657 RC-P840_PscD: Photosy 50.4 46 0.001 25.8 5.1 70 38-112 36-105 (144)
208 cd06281 PBP1_LacI_like_5 Ligan 49.8 1.6E+02 0.0034 24.8 10.7 59 65-126 17-76 (269)
209 cd06297 PBP1_LacI_like_12 Liga 49.5 1.6E+02 0.0035 24.8 10.5 59 64-126 16-75 (269)
210 cd06302 PBP1_LsrB_Quorum_Sensi 49.4 1.7E+02 0.0038 25.2 10.3 47 80-126 29-78 (298)
211 cd06298 PBP1_CcpA_like Ligand- 49.2 1.5E+02 0.0034 24.6 10.3 56 67-126 19-75 (268)
212 cd06345 PBP1_ABC_ligand_bindin 48.7 1.9E+02 0.0041 25.5 12.2 79 44-128 142-222 (344)
213 PF12219 End_tail_spike: Catal 48.2 11 0.00023 29.8 1.4 14 107-120 86-99 (160)
214 TIGR01768 GGGP-family geranylg 48.1 32 0.00069 29.6 4.4 56 93-158 15-70 (223)
215 cd07025 Peptidase_S66 LD-Carbo 48.0 56 0.0012 28.9 6.2 64 52-119 3-77 (282)
216 cd06313 PBP1_ABC_sugar_binding 47.9 1.1E+02 0.0023 26.1 7.9 64 64-127 12-78 (272)
217 PRK11780 isoprenoid biosynthes 47.8 1.4E+02 0.003 25.4 8.3 49 102-160 82-145 (217)
218 cd06273 PBP1_GntR_like_1 This 47.6 1.7E+02 0.0036 24.4 10.8 55 68-126 20-75 (268)
219 PF00532 Peripla_BP_1: Peripla 47.3 1.9E+02 0.0041 25.1 9.8 75 47-126 2-76 (279)
220 TIGR03590 PseG pseudaminic aci 46.6 1.2E+02 0.0025 26.6 8.0 18 105-123 241-258 (279)
221 cd06353 PBP1_BmpA_Med_like Per 46.4 1.2E+02 0.0026 26.2 7.9 45 81-127 32-77 (258)
222 PRK12419 riboflavin synthase s 46.1 1.6E+02 0.0035 23.9 8.7 102 43-152 7-118 (158)
223 cd06303 PBP1_LuxPQ_Quorum_Sens 46.0 1.8E+02 0.0038 24.8 9.0 33 95-127 50-82 (280)
224 cd04509 PBP1_ABC_transporter_G 45.8 1.8E+02 0.0038 24.3 9.7 78 46-129 136-215 (299)
225 PF05893 LuxC: Acyl-CoA reduct 45.8 32 0.0007 32.1 4.5 44 104-152 167-210 (399)
226 PRK09273 hypothetical protein; 45.6 67 0.0014 27.4 5.9 32 52-86 5-36 (211)
227 cd01574 PBP1_LacI Ligand-bindi 45.3 1.8E+02 0.0039 24.2 10.7 67 49-119 2-70 (264)
228 PRK10423 transcriptional repre 45.3 1.8E+02 0.0039 25.3 9.1 70 44-117 54-124 (327)
229 cd06336 PBP1_ABC_ligand_bindin 44.8 2.2E+02 0.0049 25.2 10.7 79 44-128 136-217 (347)
230 cd06386 PBP1_NPR_C_like Ligand 44.3 2E+02 0.0043 26.2 9.5 81 44-129 135-218 (387)
231 cd06270 PBP1_GalS_like Ligand 43.9 1.9E+02 0.0042 24.1 10.9 73 49-126 2-75 (268)
232 cd00758 MoCF_BD MoCF_BD: molyb 43.8 62 0.0013 24.9 5.2 39 87-126 41-84 (133)
233 cd01575 PBP1_GntR Ligand-bindi 43.4 1.9E+02 0.0041 24.0 10.5 56 67-126 19-75 (268)
234 PRK15404 leucine ABC transport 42.8 2.3E+02 0.005 25.6 9.6 78 45-128 160-239 (369)
235 PRK06756 flavodoxin; Provision 42.5 1.6E+02 0.0035 22.8 8.9 69 46-125 1-72 (148)
236 cd06283 PBP1_RegR_EndR_KdgR_li 42.4 2E+02 0.0043 23.9 10.5 58 65-126 17-75 (267)
237 PF01075 Glyco_transf_9: Glyco 42.4 1.5E+02 0.0032 24.9 7.8 77 46-126 103-182 (247)
238 cd06337 PBP1_ABC_ligand_bindin 42.2 1.9E+02 0.0041 25.9 8.9 37 91-127 189-225 (357)
239 cd03522 MoeA_like MoeA_like. T 41.8 1.3E+02 0.0029 27.1 7.6 68 45-116 158-230 (312)
240 TIGR03405 Phn_Fe-ADH phosphona 41.4 74 0.0016 29.0 6.1 103 47-158 24-144 (355)
241 cd06308 PBP1_sensor_kinase_lik 41.4 2.1E+02 0.0046 23.9 9.7 46 81-126 31-78 (270)
242 TIGR02069 cyanophycinase cyano 41.3 2.1E+02 0.0046 24.8 8.7 62 47-115 29-92 (250)
243 PF01936 NYN: NYN domain; Int 41.3 50 0.0011 25.2 4.4 25 104-128 94-118 (146)
244 cd02067 B12-binding B12 bindin 41.3 62 0.0013 24.1 4.8 37 91-127 36-72 (119)
245 cd06271 PBP1_AglR_RafR_like Li 40.9 2.1E+02 0.0045 23.7 10.0 58 64-125 20-78 (268)
246 PRK09417 mogA molybdenum cofac 40.9 1.4E+02 0.0029 25.0 7.1 42 86-127 46-93 (193)
247 TIGR00288 conserved hypothetic 40.8 1.1E+02 0.0023 25.0 6.2 48 103-161 103-150 (160)
248 PRK03604 moaC bifunctional mol 40.7 1.1E+02 0.0024 27.6 7.0 55 69-126 180-241 (312)
249 cd06329 PBP1_SBP_like_3 Peripl 40.2 2.6E+02 0.0057 24.7 10.4 80 45-128 142-224 (342)
250 COG0521 MoaB Molybdopterin bio 40.1 1.5E+02 0.0033 24.3 7.1 57 69-127 32-94 (169)
251 cd06268 PBP1_ABC_transporter_L 39.8 1.6E+02 0.0036 24.5 7.8 45 81-125 41-86 (298)
252 PRK03670 competence damage-ind 39.8 1.1E+02 0.0025 26.6 6.7 44 68-114 24-69 (252)
253 PRK13805 bifunctional acetalde 39.6 96 0.0021 32.0 7.1 76 45-125 479-558 (862)
254 cd06304 PBP1_BmpA_like Peripla 39.3 2.3E+02 0.005 23.8 9.2 79 45-127 119-200 (260)
255 PRK06774 para-aminobenzoate sy 39.2 90 0.002 25.6 5.8 47 67-121 13-59 (191)
256 cd08184 Fe-ADH3 Iron-containin 39.2 91 0.002 28.5 6.3 65 94-159 67-142 (347)
257 cd06325 PBP1_ABC_uncharacteriz 38.9 2.3E+02 0.0051 23.7 8.8 76 45-127 130-205 (281)
258 PRK04169 geranylgeranylglycery 38.7 94 0.002 26.8 5.9 46 99-153 26-71 (232)
259 cd01536 PBP1_ABC_sugar_binding 38.6 2.2E+02 0.0048 23.4 9.6 82 45-129 120-204 (267)
260 cd06326 PBP1_STKc_like Type I 38.0 2.7E+02 0.0059 24.2 12.1 78 45-128 135-214 (336)
261 COG1744 Med Uncharacterized AB 37.9 2E+02 0.0042 26.3 8.2 82 43-127 32-117 (345)
262 PF02310 B12-binding: B12 bind 37.9 44 0.00096 24.8 3.5 50 69-123 20-70 (121)
263 cd06311 PBP1_ABC_sugar_binding 37.7 2.2E+02 0.0049 23.9 8.3 46 81-126 35-82 (274)
264 PF03358 FMN_red: NADPH-depend 37.6 1.9E+02 0.0041 22.3 8.4 75 48-128 2-95 (152)
265 cd06368 PBP1_iGluR_non_NMDA_li 37.6 2.3E+02 0.005 24.6 8.6 78 44-128 125-203 (324)
266 TIGR01769 GGGP geranylgeranylg 37.5 60 0.0013 27.5 4.5 54 92-153 11-64 (205)
267 COG1611 Predicted Rossmann fol 37.0 71 0.0015 27.0 4.8 47 94-153 36-82 (205)
268 smart00852 MoCF_biosynth Proba 36.9 1.7E+02 0.0037 22.3 6.8 56 69-126 23-83 (135)
269 cd06309 PBP1_YtfQ_like Peripla 36.7 2.5E+02 0.0055 23.5 8.7 47 80-126 29-77 (273)
270 PF00885 DMRL_synthase: 6,7-di 36.6 1.8E+02 0.0039 23.0 6.9 66 47-113 4-70 (144)
271 PRK06455 riboflavin synthase; 36.3 2.3E+02 0.005 22.9 7.6 77 46-127 1-85 (155)
272 cd02803 OYE_like_FMN_family Ol 36.3 1.5E+02 0.0032 26.4 7.1 50 67-116 195-252 (327)
273 PRK15424 propionate catabolism 36.2 1E+02 0.0023 30.0 6.5 43 81-126 131-173 (538)
274 PRK05568 flavodoxin; Provision 36.0 1.9E+02 0.0042 22.0 7.3 69 46-126 1-77 (142)
275 TIGR02195 heptsyl_trn_II lipop 36.0 3E+02 0.0064 24.3 9.1 74 48-127 174-251 (334)
276 COG0707 MurG UDP-N-acetylgluco 35.8 2.8E+02 0.006 25.5 8.9 77 58-153 190-283 (357)
277 TIGR00640 acid_CoA_mut_C methy 35.7 2.1E+02 0.0045 22.2 9.2 71 49-127 4-75 (132)
278 cd00381 IMPDH IMPDH: The catal 35.7 2.8E+02 0.006 25.1 8.8 13 221-233 294-306 (325)
279 PRK13371 4-hydroxy-3-methylbut 35.6 1.7E+02 0.0036 27.4 7.4 71 46-120 224-303 (387)
280 COG2984 ABC-type uncharacteriz 35.5 3.3E+02 0.007 24.8 8.9 132 43-198 156-298 (322)
281 PRK10916 ADP-heptose:LPS hepto 35.3 2.5E+02 0.0054 25.1 8.5 72 49-126 181-260 (348)
282 KOG2440 Pyrophosphate-dependen 35.3 73 0.0016 31.9 5.2 34 94-127 220-260 (666)
283 KOG3167 Box H/ACA snoRNP compo 35.2 43 0.00094 26.6 2.9 86 32-126 10-95 (153)
284 COG0337 AroB 3-dehydroquinate 35.1 2.8E+02 0.006 25.7 8.6 74 45-126 32-114 (360)
285 PRK05670 anthranilate synthase 35.1 2E+02 0.0043 23.4 7.2 48 65-120 11-58 (189)
286 cd06346 PBP1_ABC_ligand_bindin 34.7 3.1E+02 0.0066 23.8 9.9 78 45-128 136-215 (312)
287 cd06354 PBP1_BmpA_PnrA_like Pe 34.5 2E+02 0.0044 24.4 7.5 35 80-114 32-66 (265)
288 TIGR02329 propionate_PrpR prop 34.1 1.1E+02 0.0024 29.7 6.3 42 81-125 121-162 (526)
289 TIGR00177 molyb_syn molybdenum 34.0 1E+02 0.0023 24.0 5.2 38 87-125 49-91 (144)
290 cd03145 GAT1_cyanophycinase Ty 34.0 1.6E+02 0.0036 24.7 6.7 65 45-116 28-94 (217)
291 PRK04155 chaperone protein Hch 33.7 3.4E+02 0.0074 24.1 11.1 17 103-119 145-161 (287)
292 cd00885 cinA Competence-damage 33.7 1.8E+02 0.0038 23.7 6.6 46 69-116 24-69 (170)
293 COG1609 PurR Transcriptional r 33.6 3.5E+02 0.0077 24.2 10.5 66 44-113 56-122 (333)
294 PF02608 Bmp: Basic membrane p 33.3 1.4E+02 0.0031 26.4 6.5 46 80-127 34-81 (306)
295 cd06352 PBP1_NPR_GC_like Ligan 33.0 3.3E+02 0.0071 24.4 9.0 79 45-129 136-218 (389)
296 cd06284 PBP1_LacI_like_6 Ligan 33.0 2.8E+02 0.0061 22.9 10.8 65 49-117 2-67 (267)
297 cd06347 PBP1_ABC_ligand_bindin 32.9 3.2E+02 0.007 23.6 9.7 78 45-127 134-213 (334)
298 cd06275 PBP1_PurR Ligand-bindi 32.9 2.9E+02 0.0062 23.0 8.4 38 80-117 29-67 (269)
299 COG1819 Glycosyl transferases, 32.9 61 0.0013 30.3 4.2 33 103-152 298-330 (406)
300 PRK10936 TMAO reductase system 32.9 3.1E+02 0.0066 24.5 8.7 68 45-117 45-116 (343)
301 PRK15473 cbiF cobalt-precorrin 32.9 2.4E+02 0.0052 24.3 7.7 63 93-164 68-131 (257)
302 PF04101 Glyco_tran_28_C: Glyc 32.7 44 0.00096 26.4 2.9 30 106-152 73-102 (167)
303 PRK09701 D-allose transporter 32.6 3.4E+02 0.0073 23.7 10.1 74 48-126 26-104 (311)
304 PRK13566 anthranilate synthase 32.5 2.2E+02 0.0048 28.9 8.3 62 42-119 522-583 (720)
305 PF01965 DJ-1_PfpI: DJ-1/PfpI 32.3 32 0.0007 26.9 1.9 48 102-159 34-87 (147)
306 PRK00286 xseA exodeoxyribonucl 31.9 3.2E+02 0.007 25.6 8.9 73 42-121 131-208 (438)
307 PF08357 SEFIR: SEFIR domain; 31.7 1.4E+02 0.0031 23.1 5.6 72 47-121 1-74 (150)
308 PF00994 MoCF_biosynth: Probab 31.5 1.8E+02 0.0039 22.5 6.1 46 69-116 22-67 (144)
309 TIGR00237 xseA exodeoxyribonuc 31.4 3.4E+02 0.0074 25.6 9.0 75 41-122 124-204 (432)
310 cd06382 PBP1_iGluR_Kainate N-t 30.9 3.6E+02 0.0078 23.5 9.3 77 44-128 127-204 (327)
311 cd06342 PBP1_ABC_LIVBP_like Ty 30.9 3.5E+02 0.0077 23.4 10.8 78 45-128 134-213 (334)
312 PRK00170 azoreductase; Reviewe 30.7 2.9E+02 0.0063 22.4 8.1 31 46-76 1-32 (201)
313 cd06344 PBP1_ABC_ligand_bindin 30.5 3.7E+02 0.008 23.5 8.8 77 45-125 133-211 (332)
314 cd01540 PBP1_arabinose_binding 30.5 3.3E+02 0.0072 22.9 10.3 80 47-129 130-217 (289)
315 cd01537 PBP1_Repressors_Sugar_ 30.2 3E+02 0.0065 22.3 8.8 81 46-128 118-200 (264)
316 cd06339 PBP1_YraM_LppC_lipopro 30.0 3.9E+02 0.0085 23.6 9.3 65 49-116 2-68 (336)
317 cd06292 PBP1_LacI_like_10 Liga 29.9 3.3E+02 0.0071 22.7 10.6 48 64-114 16-64 (273)
318 PRK01215 competence damage-ind 29.2 2.9E+02 0.0063 24.2 7.6 46 69-116 28-73 (264)
319 PF11711 Tim54: Inner membrane 29.2 2.3E+02 0.005 26.5 7.2 53 42-97 63-118 (382)
320 cd07062 Peptidase_S66_mccF_lik 28.6 1.9E+02 0.0042 25.8 6.5 68 50-120 3-82 (308)
321 COG3395 Uncharacterized protei 28.4 60 0.0013 30.5 3.2 29 96-125 337-365 (413)
322 cd06355 PBP1_FmdD_like Peripla 28.4 4.2E+02 0.0091 23.5 10.9 78 45-128 132-211 (348)
323 cd06279 PBP1_LacI_like_3 Ligan 28.3 3.7E+02 0.008 22.8 10.2 54 66-126 23-76 (283)
324 PRK11175 universal stress prot 28.3 3.9E+02 0.0085 23.1 8.5 46 95-152 97-148 (305)
325 PRK10401 DNA-binding transcrip 28.2 4.1E+02 0.009 23.3 9.1 68 44-115 57-125 (346)
326 PLN00180 NDF6 (NDH-dependent f 28.2 13 0.00027 30.1 -1.1 16 108-123 127-142 (180)
327 cd06327 PBP1_SBP_like_1 Peripl 28.1 3.5E+02 0.0076 23.6 8.2 77 46-128 135-213 (334)
328 cd06343 PBP1_ABC_ligand_bindin 28.0 4.2E+02 0.0092 23.4 11.6 79 45-129 143-223 (362)
329 cd06340 PBP1_ABC_ligand_bindin 28.0 4.2E+02 0.0092 23.4 10.1 78 45-128 143-222 (347)
330 COG2242 CobL Precorrin-6B meth 28.0 1.1E+02 0.0023 25.6 4.4 22 105-127 102-123 (187)
331 PF03641 Lysine_decarbox: Poss 27.8 45 0.00098 25.9 2.0 38 106-150 54-92 (133)
332 cd06331 PBP1_AmiC_like Type I 27.6 4.2E+02 0.009 23.2 9.1 78 46-129 132-211 (333)
333 cd06274 PBP1_FruR Ligand bindi 27.4 3.6E+02 0.0078 22.4 10.3 56 67-126 19-75 (264)
334 cd06293 PBP1_LacI_like_11 Liga 27.3 3.7E+02 0.0079 22.4 10.7 63 49-115 2-65 (269)
335 PF12138 Spherulin4: Spherulat 27.2 2.9E+02 0.0063 24.1 7.2 33 42-74 26-63 (253)
336 PRK06490 glutamine amidotransf 27.2 1.3E+02 0.0028 25.9 5.0 64 42-119 3-66 (239)
337 cd03129 GAT1_Peptidase_E_like 27.0 2.8E+02 0.0061 22.9 6.9 51 105-158 80-130 (210)
338 TIGR00640 acid_CoA_mut_C methy 26.7 1.1E+02 0.0023 23.9 4.0 30 86-115 62-92 (132)
339 PRK14987 gluconate operon tran 26.7 4.3E+02 0.0093 23.0 10.7 77 44-126 61-139 (331)
340 TIGR01481 ccpA catabolite cont 26.7 4.2E+02 0.0092 22.9 9.9 83 45-129 175-259 (329)
341 PRK11041 DNA-binding transcrip 26.6 4.1E+02 0.0088 22.7 9.3 68 44-115 33-101 (309)
342 PF04122 CW_binding_2: Putativ 26.4 1E+02 0.0023 21.9 3.7 22 101-122 68-89 (92)
343 PF02401 LYTB: LytB protein; 26.3 4.2E+02 0.0091 23.6 8.1 70 45-120 153-224 (281)
344 cd01541 PBP1_AraR Ligand-bindi 26.3 3.8E+02 0.0083 22.3 10.4 60 64-126 16-80 (273)
345 PF13528 Glyco_trans_1_3: Glyc 26.3 1E+02 0.0022 26.9 4.2 30 105-151 250-279 (318)
346 COG3340 PepE Peptidase E [Amin 26.1 2.8E+02 0.0061 23.8 6.6 70 46-126 32-103 (224)
347 cd01391 Periplasmic_Binding_Pr 26.1 3.4E+02 0.0075 21.7 8.0 78 46-129 124-205 (269)
348 cd02072 Glm_B12_BD B12 binding 26.0 1.6E+02 0.0035 22.9 4.8 59 63-126 12-75 (128)
349 PF01994 Trm56: tRNA ribose 2' 25.9 1.2E+02 0.0026 23.4 3.9 34 83-116 26-59 (120)
350 PF02863 Arg_repressor_C: Argi 25.6 63 0.0014 22.2 2.2 33 86-118 17-50 (70)
351 TIGR01815 TrpE-clade3 anthrani 25.5 4.6E+02 0.0099 26.7 9.1 63 42-120 512-574 (717)
352 cd06290 PBP1_LacI_like_9 Ligan 25.4 3.9E+02 0.0085 22.1 8.7 46 67-115 19-65 (265)
353 cd06363 PBP1_Taste_receptor Li 25.4 4.7E+02 0.01 23.9 8.7 77 45-127 175-256 (410)
354 cd06394 PBP1_iGluR_Kainate_KA1 25.3 5E+02 0.011 23.4 8.8 78 45-129 133-210 (333)
355 CHL00101 trpG anthranilate syn 25.3 2E+02 0.0043 23.6 5.6 45 68-120 14-58 (190)
356 PRK13951 bifunctional shikimat 25.2 1.2E+02 0.0027 29.1 4.9 36 91-127 220-258 (488)
357 cd02068 radical_SAM_B12_BD B12 25.1 2.1E+02 0.0045 21.5 5.4 22 94-115 55-76 (127)
358 cd06330 PBP1_Arsenic_SBP_like 24.9 4.2E+02 0.0092 23.2 8.1 80 45-128 137-218 (346)
359 cd06359 PBP1_Nba_like Type I p 24.8 4.4E+02 0.0095 23.0 8.2 77 45-128 133-209 (333)
360 PF10931 DUF2735: Protein of u 24.6 50 0.0011 21.5 1.4 8 4-11 4-11 (51)
361 COG1058 CinA Predicted nucleot 24.6 1.9E+02 0.0042 25.4 5.5 55 67-125 24-86 (255)
362 TIGR02405 trehalos_R_Ecol treh 24.6 4.6E+02 0.01 22.6 8.9 69 43-115 56-125 (311)
363 PF09954 DUF2188: Uncharacteri 24.6 50 0.0011 21.9 1.5 32 89-120 26-58 (62)
364 COG0300 DltE Short-chain dehyd 24.5 1.7E+02 0.0036 25.9 5.2 58 63-120 40-99 (265)
365 PRK09982 universal stress prot 24.4 1.5E+02 0.0033 22.7 4.5 50 93-151 91-140 (142)
366 PRK06895 putative anthranilate 24.4 3.9E+02 0.0084 21.7 7.8 87 47-162 2-91 (190)
367 PRK03892 ribonuclease P protei 24.4 1.2E+02 0.0026 25.9 4.0 35 85-122 64-98 (216)
368 TIGR00730 conserved hypothetic 24.2 1.4E+02 0.003 24.5 4.4 22 105-126 96-118 (178)
369 cd06373 PBP1_NPR_like Ligand b 23.9 5.4E+02 0.012 23.2 9.6 81 45-129 141-225 (396)
370 cd01844 SGNH_hydrolase_like_6 23.9 52 0.0011 26.3 1.8 15 142-157 57-71 (177)
371 TIGR01481 ccpA catabolite cont 23.8 4.8E+02 0.01 22.6 11.0 68 44-116 57-126 (329)
372 COG0683 LivK ABC-type branched 23.7 5.4E+02 0.012 23.2 10.1 79 47-129 149-227 (366)
373 COG1432 Uncharacterized conser 23.6 1.9E+02 0.0041 23.8 5.1 35 95-129 100-134 (181)
374 PRK10703 DNA-binding transcrip 23.5 5E+02 0.011 22.7 11.0 77 45-126 58-135 (341)
375 PF04348 LppC: LppC putative l 23.5 3.5E+02 0.0075 26.4 7.6 76 43-127 216-296 (536)
376 cd06332 PBP1_aromatic_compound 23.4 4.8E+02 0.01 22.4 9.0 77 45-128 133-209 (333)
377 PRK09739 hypothetical protein; 23.3 4.1E+02 0.009 21.7 8.4 30 46-76 3-33 (199)
378 cd01542 PBP1_TreR_like Ligand- 23.2 4.3E+02 0.0092 21.7 8.5 82 45-129 113-196 (259)
379 cd06379 PBP1_iGluR_NMDA_NR1 N- 23.1 5.5E+02 0.012 23.0 9.4 82 44-129 152-237 (377)
380 cd06307 PBP1_uncharacterized_s 22.9 4.5E+02 0.0098 21.9 10.3 34 93-127 47-81 (275)
381 COG0054 RibH Riboflavin syntha 22.8 3.8E+02 0.0082 21.6 6.4 98 45-150 11-118 (152)
382 PRK11104 hemG protoporphyrinog 22.8 3.9E+02 0.0084 21.6 6.8 85 48-152 2-88 (177)
383 PRK04280 arginine repressor; P 22.7 2.4E+02 0.0051 22.5 5.3 35 85-119 93-128 (148)
384 KOG3857 Alcohol dehydrogenase, 22.7 4.1E+02 0.0089 24.8 7.3 49 69-124 90-145 (465)
385 PF01094 ANF_receptor: Recepto 22.6 5E+02 0.011 22.3 9.0 82 44-128 119-202 (348)
386 cd06341 PBP1_ABC_ligand_bindin 22.6 5.2E+02 0.011 22.5 8.4 38 81-118 41-80 (341)
387 cd06274 PBP1_FruR Ligand bindi 22.6 4.5E+02 0.0097 21.8 9.6 104 44-160 114-222 (264)
388 PRK00441 argR arginine repress 22.5 3.9E+02 0.0085 21.2 6.6 33 86-118 94-127 (149)
389 PF02525 Flavodoxin_2: Flavodo 22.3 2.9E+02 0.0063 22.4 6.1 29 49-77 4-32 (199)
390 PF03808 Glyco_tran_WecB: Glyc 22.3 4E+02 0.0086 21.4 6.8 24 93-116 89-112 (172)
391 TIGR01465 cobM_cbiF precorrin- 22.1 3.5E+02 0.0075 22.6 6.6 62 93-163 59-121 (229)
392 TIGR02434 CobF precorrin-6A sy 21.9 3.1E+02 0.0068 23.8 6.4 58 97-164 94-156 (249)
393 cd02439 DMB-PRT_CobT Nicotinat 21.8 2.4E+02 0.0052 25.4 5.8 45 97-155 129-177 (315)
394 PRK11866 2-oxoacid ferredoxin 21.8 54 0.0012 29.1 1.6 21 107-127 78-99 (279)
395 PLN02821 1-hydroxy-2-methyl-2- 21.8 2.6E+02 0.0057 26.8 6.1 71 46-120 298-377 (460)
396 cd02071 MM_CoA_mut_B12_BD meth 21.7 1.6E+02 0.0034 22.2 4.1 48 67-114 40-88 (122)
397 PRK03341 arginine repressor; P 21.7 4.5E+02 0.0097 21.5 7.0 33 86-118 111-144 (168)
398 PRK06731 flhF flagellar biosyn 21.5 5.6E+02 0.012 22.5 8.4 90 49-152 156-248 (270)
399 PF03129 HGTP_anticodon: Antic 21.5 2.9E+02 0.0063 19.2 6.1 45 66-115 18-62 (94)
400 PRK08284 precorrin 6A synthase 21.2 3.8E+02 0.0083 23.3 6.8 60 98-163 96-156 (253)
401 PF04908 SH3BGR: SH3-binding, 21.2 3.1E+02 0.0068 20.3 5.4 52 48-102 2-53 (99)
402 TIGR01501 MthylAspMutase methy 21.1 2.3E+02 0.0049 22.3 4.8 51 71-126 23-77 (134)
403 cd00950 DHDPS Dihydrodipicolin 21.1 4.4E+02 0.0095 22.9 7.3 63 50-112 37-102 (284)
404 KOG2198 tRNA cytosine-5-methyl 21.0 1.6E+02 0.0035 27.3 4.5 110 12-126 142-260 (375)
405 cd06319 PBP1_ABC_sugar_binding 21.0 4.9E+02 0.011 21.6 8.6 80 45-129 124-208 (277)
406 cd06282 PBP1_GntR_like_2 Ligan 20.9 4.8E+02 0.01 21.4 8.3 83 45-129 115-199 (266)
407 PF01220 DHquinase_II: Dehydro 20.9 1.5E+02 0.0032 23.7 3.7 67 47-114 1-75 (140)
408 PRK05569 flavodoxin; Provision 20.9 3.8E+02 0.0082 20.3 7.1 68 46-125 1-76 (141)
409 PF10593 Z1: Z1 domain; Inter 20.9 1.3E+02 0.0028 26.0 3.7 12 105-116 110-121 (239)
410 COG1013 PorB Pyruvate:ferredox 20.9 88 0.0019 28.0 2.7 21 107-127 89-110 (294)
411 cd03376 TPP_PFOR_porB_like Thi 20.8 1E+02 0.0022 26.5 3.0 21 106-126 80-101 (235)
412 cd06298 PBP1_CcpA_like Ligand- 20.8 4.8E+02 0.01 21.5 9.5 83 45-129 115-200 (268)
413 cd04502 SGNH_hydrolase_like_7 20.8 82 0.0018 24.8 2.4 18 141-159 49-66 (171)
414 cd06300 PBP1_ABC_sugar_binding 20.8 5E+02 0.011 21.6 9.1 80 45-129 124-207 (272)
415 PRK09492 treR trehalose repres 20.8 5.4E+02 0.012 22.1 9.0 81 45-129 174-255 (315)
416 cd03128 GAT_1 Type 1 glutamine 20.7 1.3E+02 0.0028 19.3 3.1 19 103-121 44-62 (92)
417 COG1979 Uncharacterized oxidor 20.7 5.1E+02 0.011 23.9 7.5 75 44-125 27-109 (384)
418 TIGR01496 DHPS dihydropteroate 20.6 2.6E+02 0.0057 24.3 5.7 12 115-126 81-92 (257)
419 smart00537 DCX Domain in the D 20.6 2.4E+02 0.0052 20.3 4.6 61 47-115 19-81 (89)
420 cd06358 PBP1_NHase Type I peri 20.5 5.8E+02 0.013 22.3 11.4 78 45-128 131-210 (333)
421 cd06294 PBP1_ycjW_transcriptio 20.4 4.9E+02 0.011 21.4 10.4 57 66-126 23-80 (270)
422 cd02070 corrinoid_protein_B12- 20.2 1.9E+02 0.0041 23.9 4.6 88 71-172 104-198 (201)
No 1
>PRK11914 diacylglycerol kinase; Reviewed
Probab=100.00 E-value=1.7e-39 Score=290.69 Aligned_cols=188 Identities=26% Similarity=0.423 Sum_probs=168.0
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNG 124 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~ 124 (251)
.+++++||+||.||++++.+.|+++++.|+.. .+++.++.|+.++|+.++++++..+++|.||++|||||||+|+|+
T Consensus 7 ~~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~---g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GGDGTi~evv~~ 83 (306)
T PRK11914 7 EIGKVTVLTNPLSGHGAAPHAAERAIARLHHR---GVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGDGVISNALQV 83 (306)
T ss_pred CCceEEEEECCCCCCCcHHHHHHHHHHHHHHc---CCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECCchHHHHHhHH
Confidence 57899999999999999889999988888764 466777889999999999999988899999999999999999999
Q ss_pred HHhCCcccccccccccCCceEEEecCCChhHHhhhcCCCC-CHHHHHHHHHcCceeeeeEEEEEcCCCCceEEEEEeccc
Q 025520 125 FFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRN-DPYEAVERIAKGVRSWVDVGVINGETGEPHYFINVADLH 203 (251)
Q Consensus 125 l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~-~~~~al~~i~~g~~~~iDvg~v~~~~~~~~~f~n~~~iG 203 (251)
|.. .++|||+||+||+|||||+||+|. +++++++.+.++..+++|++++++.++..+||+|++++|
T Consensus 84 l~~-------------~~~~lgiiP~GT~NdfAr~lg~~~~~~~~a~~~i~~g~~~~iDlg~v~~~~~~~~~f~n~~~~G 150 (306)
T PRK11914 84 LAG-------------TDIPLGIIPAGTGNDHAREFGIPTGDPEAAADVIVDGWTETVDLGRIQDDDGIVKWFGTVAATG 150 (306)
T ss_pred hcc-------------CCCcEEEEeCCCcchhHHHcCCCCCCHHHHHHHHHcCCceEEEEEEEecCCCCcEEEEEEEeee
Confidence 962 468999999999999999999996 799999999999999999999987554458999999999
Q ss_pred chhhhcccccccc-ccCchhHHHHHHHHHHhCCCccEEEEECC-EEE
Q 025520 204 LSAKAGYYASRYK-RFGNLCYVIGALQAFMGHRNQDLRVKVSS-CLY 248 (251)
Q Consensus 204 ~~a~v~~~~~~~~-~~G~l~Y~~~~~~~~~~~~~~~~~i~~dg-~~~ 248 (251)
|++.+....++.| ++|+++|++++++.++++++++++|++|| +.+
T Consensus 151 ~~a~v~~~~~~~k~~~G~~aY~~~~l~~l~~~~~~~~~i~~dg~~~~ 197 (306)
T PRK11914 151 FDSLVTDRANRMRWPHGRMRYNLAMLAELSKLRPLPFRLVLDGTEEI 197 (306)
T ss_pred hHHHHHHHHHhccccCCchhhHHHHHHHHHhcCCCcEEEEEeCCeEE
Confidence 9999887666554 47999999999999999999999999999 554
No 2
>PRK00861 putative lipid kinase; Reviewed
Probab=100.00 E-value=3.1e-39 Score=288.21 Aligned_cols=182 Identities=28% Similarity=0.426 Sum_probs=165.1
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l 125 (251)
+++++||+||.||++++.+.|++++..|+.. .++.++.|+..+|+.++++++..+++|.||++|||||||+|+|+|
T Consensus 2 ~~~~~iI~NP~sG~~~~~~~~~~i~~~l~~~----~~~~~~~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTl~evv~~l 77 (300)
T PRK00861 2 TRSACLIFNPVAGQGNPEVDLALIRAILEPE----MDLDIYLTTPEIGADQLAQEAIERGAELIIASGGDGTLSAVAGAL 77 (300)
T ss_pred CceEEEEECCCCCCCchhhhHHHHHHHHHhc----CceEEEEccCCCCHHHHHHHHHhcCCCEEEEECChHHHHHHHHHH
Confidence 4789999999999998888888888777652 467778999999999999999888999999999999999999999
Q ss_pred HhCCcccccccccccCCceEEEecCCChhHHhhhcCCCCCHHHHHHHHHcCceeeeeEEEEEcCCCCceEEEEEecccch
Q 025520 126 FSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRSWVDVGVINGETGEPHYFINVADLHLS 205 (251)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~al~~i~~g~~~~iDvg~v~~~~~~~~~f~n~~~iG~~ 205 (251)
.. .+++||+||+||+|||||+||+|.++.++++.|.++..+++|++++++ +||+|++++||+
T Consensus 78 ~~-------------~~~~lgviP~GTgNdfAr~lgi~~~~~~a~~~i~~g~~~~iDlg~vn~-----~~fin~a~~G~~ 139 (300)
T PRK00861 78 IG-------------TDIPLGIIPRGTANAFAAALGIPDTIEEACRTILQGKTRRVDVAYCNG-----QPMILLAGIGFE 139 (300)
T ss_pred hc-------------CCCcEEEEcCCchhHHHHHcCCCCCHHHHHHHHHcCCcEEeeEEEECC-----EEEEEEEeccHH
Confidence 73 358999999999999999999999999999999999999999999998 899999999999
Q ss_pred hhhccccc--cccccCchhHHHHHHHHHHhCCCccEEEEECCEEEE
Q 025520 206 AKAGYYAS--RYKRFGNLCYVIGALQAFMGHRNQDLRVKVSSCLYI 249 (251)
Q Consensus 206 a~v~~~~~--~~~~~G~l~Y~~~~~~~~~~~~~~~~~i~~dg~~~~ 249 (251)
+++....+ .++++|+++|++.+++.++++++++++|++||+.+.
T Consensus 140 a~v~~~~~~~~k~~~G~~aY~~~~l~~l~~~~~~~~~i~~dg~~~~ 185 (300)
T PRK00861 140 AETVEEADREAKNRFGILAYILSGLQQLRELESFEVEIETEDQIIT 185 (300)
T ss_pred HHHHHHhhHHHHhcccHHHHHHHHHHHhccCCCeeEEEEECCeEEE
Confidence 99987653 456789999999999999999999999999998764
No 3
>PRK13059 putative lipid kinase; Reviewed
Probab=100.00 E-value=1.7e-38 Score=283.03 Aligned_cols=184 Identities=26% Similarity=0.386 Sum_probs=160.4
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l 125 (251)
+++++||+||.||++++.+.|+++++.|.+. +.++.++.++..++ .+.++++..+++|.|+++|||||+|+|+|+|
T Consensus 1 ~~~~~~I~NP~aG~g~~~~~~~~i~~~l~~~---g~~~~~~~~~~~~~-~~~~~~~~~~~~d~vi~~GGDGTv~evv~gl 76 (295)
T PRK13059 1 MKKVKFIYNPYSGENAIISELDKVIRIHQEK---GYLVVPYRISLEYD-LKNAFKDIDESYKYILIAGGDGTVDNVVNAM 76 (295)
T ss_pred CcEEEEEECCcccchhHHHHHHHHHHHHHHC---CcEEEEEEccCcch-HHHHHHHhhcCCCEEEEECCccHHHHHHHHH
Confidence 4689999999999998888888888888764 35665566665555 4566777778899999999999999999999
Q ss_pred HhCCcccccccccccCCceEEEecCCChhHHhhhcCCCCCHHHHHHHHHcCceeeeeEEEEEcCCCCceEEEEEecccch
Q 025520 126 FSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRSWVDVGVINGETGEPHYFINVADLHLS 205 (251)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~al~~i~~g~~~~iDvg~v~~~~~~~~~f~n~~~iG~~ 205 (251)
+.. ..++|||+||+||+|||||+||++.++.++++.|..++.+++|++++++ +||+|++++|++
T Consensus 77 ~~~-----------~~~~~lgviP~GTgNdfAr~lgi~~~~~~a~~~i~~g~~~~vDlg~v~~-----~~f~n~~~~G~~ 140 (295)
T PRK13059 77 KKL-----------NIDLPIGILPVGTANDFAKFLGMPTDIGEACEQILKSKPKKVDLGKIND-----KYFINVASTGLF 140 (295)
T ss_pred Hhc-----------CCCCcEEEECCCCHhHHHHHhCCCCCHHHHHHHHHhCCcEEeeEEEECC-----EEEEEEEeeeec
Confidence 843 2468999999999999999999999999999999999999999999998 899999999999
Q ss_pred hhhccccc--cccccCchhHHHHHHHHHHhCCCccEEEEECCEEEE
Q 025520 206 AKAGYYAS--RYKRFGNLCYVIGALQAFMGHRNQDLRVKVSSCLYI 249 (251)
Q Consensus 206 a~v~~~~~--~~~~~G~l~Y~~~~~~~~~~~~~~~~~i~~dg~~~~ 249 (251)
+++....+ .++++|+++|++.+++.++++++++++|++|++++.
T Consensus 141 a~v~~~~~~~~k~~~G~~aY~~~~~~~l~~~~~~~~~i~~d~~~~~ 186 (295)
T PRK13059 141 TDVSQKTDVNLKNTIGKLAYYLKGLEELPNFRKLKVKVTSEEVNFD 186 (295)
T ss_pred hhhhhhccHHHhhCcchHHHHHHHHHHHhcCCCeeEEEEECCEEEE
Confidence 99987753 456789999999999999999999999999998763
No 4
>PRK13337 putative lipid kinase; Reviewed
Probab=100.00 E-value=2.2e-38 Score=283.38 Aligned_cols=185 Identities=30% Similarity=0.443 Sum_probs=166.4
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l 125 (251)
+++++||+||.||+++..+.|.++.+.|++. ..++.++.|+..+|+.++++++..+++|.||++|||||||+|+|+|
T Consensus 1 ~~r~~~I~Np~aG~~~~~~~~~~~~~~l~~~---~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~~vv~gl 77 (304)
T PRK13337 1 MKRARIIYNPTSGRELFKKNLPDVLQKLEQA---GYETSAHATTGPGDATLAAERAVERKFDLVIAAGGDGTLNEVVNGI 77 (304)
T ss_pred CceEEEEECCcccchhHHHHHHHHHHHHHHc---CCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHH
Confidence 4789999999999988888898888888764 4677778999999999999998888899999999999999999999
Q ss_pred HhCCcccccccccccCCceEEEecCCChhHHhhhcCCCCCHHHHHHHHHcCceeeeeEEEEEcCCCCceEEEEEecccch
Q 025520 126 FSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRSWVDVGVINGETGEPHYFINVADLHLS 205 (251)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~al~~i~~g~~~~iDvg~v~~~~~~~~~f~n~~~iG~~ 205 (251)
+.. ...+|||+||.||+|||||++|++.++.++++.+.++..+++|++++++ +||+|++++|++
T Consensus 78 ~~~-----------~~~~~lgiiP~GT~NdfAr~lgi~~~~~~a~~~i~~g~~~~vDlg~vn~-----~~fln~~g~G~~ 141 (304)
T PRK13337 78 AEK-----------ENRPKLGIIPVGTTNDFARALHVPRDIEKAADVIIEGHTVPVDIGKANN-----RYFINIAGGGRL 141 (304)
T ss_pred hhC-----------CCCCcEEEECCcCHhHHHHHcCCCCCHHHHHHHHHcCCeEEEEEEEECC-----EEEEeeehhhHH
Confidence 743 2468999999999999999999999999999999999999999999998 999999999999
Q ss_pred hhhcccc--ccccccCchhHHHHHHHHHHhCCCccEEEEECCEEEE
Q 025520 206 AKAGYYA--SRYKRFGNLCYVIGALQAFMGHRNQDLRVKVSSCLYI 249 (251)
Q Consensus 206 a~v~~~~--~~~~~~G~l~Y~~~~~~~~~~~~~~~~~i~~dg~~~~ 249 (251)
+++.... +.++++|+++|++.+++.++++++++++|++|++.+.
T Consensus 142 a~v~~~~~~~~k~~~G~~aY~~~~~~~l~~~~~~~~~i~~d~~~~~ 187 (304)
T PRK13337 142 TELTYEVPSKLKTMLGQLAYYLKGIEMLPSLKATDVRIEYDGKLFQ 187 (304)
T ss_pred HHHHHhcCHHHhcCcccHHHHHHHHHHHhhCCCceEEEEECCeEEE
Confidence 9987653 3456789999999999999999999999999998764
No 5
>PRK13055 putative lipid kinase; Reviewed
Probab=100.00 E-value=2.4e-38 Score=286.53 Aligned_cols=185 Identities=26% Similarity=0.403 Sum_probs=163.3
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecC-CccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTS-GPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNG 124 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~ 124 (251)
+++++||+||.||++++.+.|.++.+.|+.. .+++.++.|+ .++++.++++++..+++|.||++|||||+|+|+|+
T Consensus 2 ~~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~---g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GGDGTl~evvng 78 (334)
T PRK13055 2 QKRARLIYNPTSGQEIMKKNVADILDILEQA---GYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGGDGTINEVVNG 78 (334)
T ss_pred CceEEEEECCCCCchhHHHHHHHHHHHHHHc---CCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECCCCHHHHHHHH
Confidence 5799999999999999888999988888764 3566666565 56799999999888889999999999999999999
Q ss_pred HHhCCcccccccccccCCceEEEecCCChhHHhhhcCCCC-CHHHHHHHHHcCceeeeeEEEEE-cCCCCceEEEEEecc
Q 025520 125 FFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRN-DPYEAVERIAKGVRSWVDVGVIN-GETGEPHYFINVADL 202 (251)
Q Consensus 125 l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~-~~~~al~~i~~g~~~~iDvg~v~-~~~~~~~~f~n~~~i 202 (251)
|... ...++||+||+||+|||||+|+++. ++.++++.+.++..+++|+++++ + +||+|++++
T Consensus 79 l~~~-----------~~~~~LgiiP~GTgNdfAr~Lgi~~~~~~~a~~~l~~g~~~~vD~g~v~~~-----~~F~n~ag~ 142 (334)
T PRK13055 79 IAPL-----------EKRPKMAIIPAGTTNDYARALKIPRDNPVEAAKVILKNQTIKMDIGRANED-----KYFINIAAG 142 (334)
T ss_pred Hhhc-----------CCCCcEEEECCCchhHHHHHcCCCCcCHHHHHHHHHcCCcEEeeEEEECCC-----cEEEEEehh
Confidence 9742 2468999999999999999999999 89999999999999999999995 5 899999999
Q ss_pred cchhhhcccc--ccccccCchhHHHHHHHHHHhCCCccEEEEECCEEEE
Q 025520 203 HLSAKAGYYA--SRYKRFGNLCYVIGALQAFMGHRNQDLRVKVSSCLYI 249 (251)
Q Consensus 203 G~~a~v~~~~--~~~~~~G~l~Y~~~~~~~~~~~~~~~~~i~~dg~~~~ 249 (251)
|+++++.... ..++++|+++|+..+++.++++++++++|++||+.+.
T Consensus 143 G~da~v~~~~~~~~k~~~G~laY~~~~~~~l~~~~~~~~~i~~d~~~~~ 191 (334)
T PRK13055 143 GSLTELTYSVPSQLKSMFGYLAYLAKGAELLPRVSPVPVRITYDEGVFE 191 (334)
T ss_pred ccchHHHHhcCHHHHhhccHHHHHHHHHHHHHhcCCeeEEEEECCEEEE
Confidence 9999997654 3456789999999999999999999999999998653
No 6
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=100.00 E-value=4.4e-38 Score=280.70 Aligned_cols=186 Identities=33% Similarity=0.517 Sum_probs=168.4
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNG 124 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~ 124 (251)
+++++.+|+||.||+++..+.|++++..|+++ ..++..+.|+..+|+.++++++..+++|.|+++|||||+|||+|+
T Consensus 1 ~~~~~~~i~Np~sG~~~~~~~~~~~~~~l~~~---g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGTv~eving 77 (301)
T COG1597 1 RMKKALLIYNPTSGKGKAKKLLREVEELLEEA---GHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGTVNEVANG 77 (301)
T ss_pred CCceEEEEEcccccccchhhHHHHHHHHHHhc---CCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHH
Confidence 47899999999999999999999999999875 456777788888999999999999999999999999999999999
Q ss_pred HHhCCcccccccccccCCceEEEecCCChhHHhhhcCCCCC-HHHHHHHHHcCceeeeeEEEEEcCCCCce-EEEEEecc
Q 025520 125 FFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRND-PYEAVERIAKGVRSWVDVGVINGETGEPH-YFINVADL 202 (251)
Q Consensus 125 l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~-~~~al~~i~~g~~~~iDvg~v~~~~~~~~-~f~n~~~i 202 (251)
|.... ..+||+||+||+|||||+||+|.+ +.++++.+.+|+++++|++++++ + ||+|++++
T Consensus 78 l~~~~------------~~~LgilP~GT~NdfAr~Lgip~~~~~~Al~~i~~g~~~~vDlg~~~~-----~~~fin~a~~ 140 (301)
T COG1597 78 LAGTD------------DPPLGILPGGTANDFARALGIPLDDIEAALELIKSGETRKVDLGQVNG-----RRYFINNAGI 140 (301)
T ss_pred HhcCC------------CCceEEecCCchHHHHHHcCCCchhHHHHHHHHHcCCeEEEeehhcCC-----cceEEEEeec
Confidence 98543 222999999999999999999995 99999999999999999998887 6 99999999
Q ss_pred cchhhhccccc--cccccCchhHHHHHHHHHHhCCCccEEEEECCEEEEE
Q 025520 203 HLSAKAGYYAS--RYKRFGNLCYVIGALQAFMGHRNQDLRVKVSSCLYIF 250 (251)
Q Consensus 203 G~~a~v~~~~~--~~~~~G~l~Y~~~~~~~~~~~~~~~~~i~~dg~~~~~ 250 (251)
|++++++...+ +++.+|.++|++.+++.+.+.++++++|++|++.+..
T Consensus 141 G~~a~~~~~~~~~~k~~~g~~~y~~~~~~~l~~~~~~~~~i~~d~~~~~~ 190 (301)
T COG1597 141 GFDAEVVAAVEEERKKGFGRLAYALAGLAVLARLKPFRIEIEYDGKTFEG 190 (301)
T ss_pred chhHHHHHhhcHHHHhccchHHHHHHHHHhccccCCCcEEEEEcCcEEEE
Confidence 99999998875 4456799999999999999999999999999998764
No 7
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=100.00 E-value=2.7e-37 Score=291.04 Aligned_cols=190 Identities=26% Similarity=0.371 Sum_probs=166.8
Q ss_pred CCCCCeEEEEEcCCCCCCChhhHHH-HHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 43 SSRRRDLVFVVNPRGASGRTGKEWK-KLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 43 ~~~~~~i~vivNP~sg~g~~~~~~~-~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
.+++|+++||+||.||++++.+.|. ++.+.|+.. .+++.++.|+.++|+.++++++...++|.||++|||||||||
T Consensus 108 ~~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~---gi~~~v~~T~~~ghA~~la~~~~~~~~D~VV~vGGDGTlnEV 184 (481)
T PLN02958 108 LGRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDA---DIQLTIQETKYQLHAKEVVRTMDLSKYDGIVCVSGDGILVEV 184 (481)
T ss_pred ccCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHc---CCeEEEEeccCccHHHHHHHHhhhcCCCEEEEEcCCCHHHHH
Confidence 3689999999999999999988875 577788764 467888899999999999999887889999999999999999
Q ss_pred HHHHHhCCcccccccccccCCceEEEecCCChhHHhhhc----CCCCCHHHHHHHHHcCceeeeeEEEEEcCCCCceE-E
Q 025520 122 VNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTF----GWRNDPYEAVERIAKGVRSWVDVGVINGETGEPHY-F 196 (251)
Q Consensus 122 ln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~l----g~~~~~~~al~~i~~g~~~~iDvg~v~~~~~~~~~-f 196 (251)
+|+|+.+. ++....++|||+||+||+||||+++ |+|.++.++++.|+.|..+++|+++++.. ..++ |
T Consensus 185 vNGL~~~~------~~~~~~~~pLGiIPaGTgNdfArsL~~~~gip~~~~~A~~~I~~g~~~~vDlg~v~~~--~~~~f~ 256 (481)
T PLN02958 185 VNGLLERE------DWKTAIKLPIGMVPAGTGNGMAKSLLDSVGEPCSATNAVLAIIRGHKCSLDVATILQG--ETKFFS 256 (481)
T ss_pred HHHHhhCc------cccccccCceEEecCcCcchhhhhhccccCCCcCHHHHHHHHHcCCceEEeEEEEEcC--CceEEE
Confidence 99998542 1222457999999999999999999 99999999999999999999999999742 1244 4
Q ss_pred EEEecccchhhhccccccccccCchhHHHHHHHHHHhCCCccEEEEE
Q 025520 197 INVADLHLSAKAGYYASRYKRFGNLCYVIGALQAFMGHRNQDLRVKV 243 (251)
Q Consensus 197 ~n~~~iG~~a~v~~~~~~~~~~G~l~Y~~~~~~~~~~~~~~~~~i~~ 243 (251)
+|++++||+|++...++++|++|.++|.+++++.++++++++++|++
T Consensus 257 vn~~g~GfdAdV~~~se~kr~lG~lrY~~~~l~~l~~~r~y~~~I~~ 303 (481)
T PLN02958 257 VLMLAWGLVADIDIESEKYRWMGSARLDFYGLQRILCLRQYNGRISF 303 (481)
T ss_pred EEeeeeehhhhhhcccccccccchHHHHHHHHHHHHhcCCcceEEEE
Confidence 79999999999988888888999999999999999999999999884
No 8
>PRK13057 putative lipid kinase; Reviewed
Probab=100.00 E-value=4.6e-37 Score=272.72 Aligned_cols=176 Identities=32% Similarity=0.477 Sum_probs=156.8
Q ss_pred EEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCC
Q 025520 50 VFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAG 129 (251)
Q Consensus 50 ~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~ 129 (251)
+||+||.||+++ +.|+++++.|++. ++++....|+.++++.+++++ ...++|.|+++|||||||+|+|+|..
T Consensus 1 ~~I~Np~sg~~~--~~~~~i~~~l~~~---g~~~~~~~t~~~~~a~~~~~~-~~~~~d~iiv~GGDGTv~~v~~~l~~-- 72 (287)
T PRK13057 1 LLLVNRHARSGR--AALAAARAALEAA---GLELVEPPAEDPDDLSEVIEA-YADGVDLVIVGGGDGTLNAAAPALVE-- 72 (287)
T ss_pred CEEECCCCCCcc--hhHHHHHHHHHHc---CCeEEEEecCCHHHHHHHHHH-HHcCCCEEEEECchHHHHHHHHHHhc--
Confidence 479999998775 5688888888764 466777889899999999988 45679999999999999999999963
Q ss_pred cccccccccccCCceEEEecCCChhHHhhhcCCCCCHHHHHHHHHcCceeeeeEEEEEcCCCCceEEEEEecccchhhhc
Q 025520 130 KLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRSWVDVGVINGETGEPHYFINVADLHLSAKAG 209 (251)
Q Consensus 130 ~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~al~~i~~g~~~~iDvg~v~~~~~~~~~f~n~~~iG~~a~v~ 209 (251)
.++||++||+||+|||||+||++.+++++++.|..+..+++|++++++ +||+|++++|+|+++.
T Consensus 73 -----------~~~~lgiiP~GT~Ndfar~Lg~~~~~~~a~~~i~~~~~~~vD~g~~~~-----~~f~n~~g~G~da~v~ 136 (287)
T PRK13057 73 -----------TGLPLGILPLGTANDLARTLGIPLDLEAAARVIATGQVRRIDLGWVNG-----HYFFNVASLGLSAELA 136 (287)
T ss_pred -----------CCCcEEEECCCCccHHHHHcCCCCCHHHHHHHHHcCCeEEeeEEEECC-----EEEEEEEecCccHHHH
Confidence 358999999999999999999999999999999999999999999987 9999999999999998
Q ss_pred ccc--ccccccCchhHHHHHHHHHHhCCCccEEEEECCEEEE
Q 025520 210 YYA--SRYKRFGNLCYVIGALQAFMGHRNQDLRVKVSSCLYI 249 (251)
Q Consensus 210 ~~~--~~~~~~G~l~Y~~~~~~~~~~~~~~~~~i~~dg~~~~ 249 (251)
... +.++++|+++|++.+++.++++++++++|++||+.+.
T Consensus 137 ~~~~~~~k~~~G~~aY~~~~~~~l~~~~~~~~~l~~d~~~~~ 178 (287)
T PRK13057 137 RRLTKELKRRWGTLGYAIAALRVLRRSRPFTAEIEHDGRTER 178 (287)
T ss_pred HHhhHHhhccCChhHHHHHHHHHHhhCCCeEEEEEECCEEEE
Confidence 653 3456789999999999999999999999999998874
No 9
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=100.00 E-value=8.9e-37 Score=271.64 Aligned_cols=182 Identities=27% Similarity=0.419 Sum_probs=156.7
Q ss_pred eEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHh
Q 025520 48 DLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFS 127 (251)
Q Consensus 48 ~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~ 127 (251)
++.+|+||.|+. .+.|.++++.|++. .+++.++.|+.++|+.++++++...++|.||++|||||||||+|+|+.
T Consensus 1 ~~~~I~N~~~~~---~~~~~~~~~~l~~~---g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTi~ev~ngl~~ 74 (293)
T TIGR03702 1 KALLILNGKQAD---NEDVREAVGDLRDE---GIQLHVRVTWEKGDAQRYVAEALALGVSTVIAGGGDGTLREVATALAQ 74 (293)
T ss_pred CEEEEEeCCccc---hhHHHHHHHHHHHC---CCeEEEEEecCCCCHHHHHHHHHHcCCCEEEEEcCChHHHHHHHHHHh
Confidence 578999999863 34566777777663 466777889999999999999988889999999999999999999975
Q ss_pred CCcccccccccccCCceEEEecCCChhHHhhhcCCCCCHHHHHHHHHcCceeeeeEEEEEcCCCCceEEEEEecccchhh
Q 025520 128 AGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRSWVDVGVINGETGEPHYFINVADLHLSAK 207 (251)
Q Consensus 128 ~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~al~~i~~g~~~~iDvg~v~~~~~~~~~f~n~~~iG~~a~ 207 (251)
.. ....+||++||+||+|||||+|++|.++.++++.+..+.++++|++++++. +||+|++++|||++
T Consensus 75 ~~---------~~~~~~lgiiP~GTgNdfAr~l~ip~~~~~a~~~i~~g~~~~iDlg~v~~~----~~f~n~~~~G~da~ 141 (293)
T TIGR03702 75 IR---------DDAAPALGLLPLGTANDFATAAGIPLEPAKALKLALNGAAQPIDLARVNGK----HYFLNMATGGFGTR 141 (293)
T ss_pred hC---------CCCCCcEEEEcCCchhHHHHhcCCCCCHHHHHHHHHhCCceeeeEEEECCc----cEEEEEeecccchH
Confidence 32 123579999999999999999999999999999999999999999999841 79999999999999
Q ss_pred hccccc--cccccCchhHHHHHHHHHHhCCCccEEEEECCEEE
Q 025520 208 AGYYAS--RYKRFGNLCYVIGALQAFMGHRNQDLRVKVSSCLY 248 (251)
Q Consensus 208 v~~~~~--~~~~~G~l~Y~~~~~~~~~~~~~~~~~i~~dg~~~ 248 (251)
+....+ .++++|+++|++++++.++++++++++|+.|++.+
T Consensus 142 v~~~~~~~~k~~~G~~aY~~~~l~~l~~~~~~~~~i~~~~~~~ 184 (293)
T TIGR03702 142 VTTETSEKLKKALGGAAYLITGLTRFSELTAASCEFRGPDFHW 184 (293)
T ss_pred hhhhhhHHHHhccchHHHHHHHHHHHhhCCCeEEEEEECCEEE
Confidence 876643 44567999999999999999999999999998765
No 10
>PRK13054 lipid kinase; Reviewed
Probab=100.00 E-value=9.2e-37 Score=272.41 Aligned_cols=184 Identities=24% Similarity=0.372 Sum_probs=159.9
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l 125 (251)
+++++||+||+++ ..+.|.+++..|... ..++.+..|+.++|+.++++++..+++|.||++|||||||+|+|+|
T Consensus 3 ~~~~~~i~N~~~~---~~~~~~~~~~~l~~~---g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~evv~~l 76 (300)
T PRK13054 3 FPKSLLILNGKSA---GNEELREAVGLLREE---GHTLHVRVTWEKGDAARYVEEALALGVATVIAGGGDGTINEVATAL 76 (300)
T ss_pred CceEEEEECCCcc---chHHHHHHHHHHHHc---CCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEECCccHHHHHHHHH
Confidence 6899999999874 346677777777653 4567778899999999999998888899999999999999999999
Q ss_pred HhCCcccccccccccCCceEEEecCCChhHHhhhcCCCCCHHHHHHHHHcCceeeeeEEEEEcCCCCce-EEEEEecccc
Q 025520 126 FSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRSWVDVGVINGETGEPH-YFINVADLHL 204 (251)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~al~~i~~g~~~~iDvg~v~~~~~~~~-~f~n~~~iG~ 204 (251)
+... ...+++||+||+||+|||||+||+|.++.++++.|.++..+++|++++++ + ||+|++++||
T Consensus 77 ~~~~---------~~~~~~lgiiP~GTgNdfar~lgi~~~~~~a~~~i~~g~~~~iDlg~v~~-----~~~f~n~~~~G~ 142 (300)
T PRK13054 77 AQLE---------GDARPALGILPLGTANDFATAAGIPLEPDKALKLAIEGRAQPIDLARVND-----RTYFINMATGGF 142 (300)
T ss_pred Hhhc---------cCCCCcEEEEeCCcHhHHHHhcCCCCCHHHHHHHHHhCCceEEEEEEEcC-----ceEEEEEeecch
Confidence 8531 12468999999999999999999999999999999999999999999987 6 9999999999
Q ss_pred hhhhcccc-c-cccccCchhHHHHHHHHHHhCCCccEEEEECCEEEE
Q 025520 205 SAKAGYYA-S-RYKRFGNLCYVIGALQAFMGHRNQDLRVKVSSCLYI 249 (251)
Q Consensus 205 ~a~v~~~~-~-~~~~~G~l~Y~~~~~~~~~~~~~~~~~i~~dg~~~~ 249 (251)
++++.... + .++++|+++|++.+++.++++++++++|+.|++.++
T Consensus 143 ~a~v~~~~~~~~k~~~G~~~Y~~~~l~~l~~~~~~~~~i~~d~~~~~ 189 (300)
T PRK13054 143 GTRVTTETPEKLKAALGGVAYLIHGLMRMDTLKPDRCEIRGPDFHWQ 189 (300)
T ss_pred hHHHHHhhHHHHHhccchHHHHHHHHHHHhhCCCeEEEEEeCCcEEE
Confidence 99987664 2 345689999999999999999999999999997654
No 11
>PLN02204 diacylglycerol kinase
Probab=100.00 E-value=3.5e-36 Score=284.38 Aligned_cols=205 Identities=21% Similarity=0.326 Sum_probs=175.6
Q ss_pred CCCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHH---HcCCCEEEEEeCCchH
Q 025520 42 SSSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAI---KEGADAVIAVGGDGTL 118 (251)
Q Consensus 42 ~~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~---~~~~d~ivv~GGDGTl 118 (251)
+..|+|+++||+||.||++++.+.|+++.+.|+.. .+++.++.|+.++||.++++++. ..++|.||++|||||+
T Consensus 155 ~~~r~k~llVivNP~sGkg~~~~~~~~V~p~f~~a---~i~~~v~~T~~aghA~d~~~~~~~~~l~~~D~VVaVGGDGt~ 231 (601)
T PLN02204 155 EVGRPKNLLVFVHPLSGKGSGSRTWETVSPIFIRA---KVKTKVIVTERAGHAFDVMASISNKELKSYDGVIAVGGDGFF 231 (601)
T ss_pred ccCCCceEEEEECCCCCCcchHHHHHHHHHHHHHc---CCeEEEEEecCcchHHHHHHHHhhhhccCCCEEEEEcCccHH
Confidence 57899999999999999999999999999999764 46788899999999999988764 4689999999999999
Q ss_pred HHHHHHHHhCCcc-------------------------------cccccc------------------------------
Q 025520 119 HEVVNGFFSAGKL-------------------------------VTNHNR------------------------------ 137 (251)
Q Consensus 119 ~~vln~l~~~~~~-------------------------------~~~~~~------------------------------ 137 (251)
|||+|+|+..... .+..++
T Consensus 232 nEVlNGL~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (601)
T PLN02204 232 NEILNGYLLSRLKVPYPPSPSDSVHSVQSRGSSSVHEPNETVHECDNEDHSPLLSDSVQEVMNFRTENGSCEGDQDSDFP 311 (601)
T ss_pred HHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999842100 000000
Q ss_pred cccCCceEEEecCCChhHHhhhcCCCCCHHHHHHHHHcCceeeeeEEEEEcCC--------CCceEEEEEecccchhhhc
Q 025520 138 ESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRSWVDVGVINGET--------GEPHYFINVADLHLSAKAG 209 (251)
Q Consensus 138 ~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~al~~i~~g~~~~iDvg~v~~~~--------~~~~~f~n~~~iG~~a~v~ 209 (251)
....+++||+||+||+|+|++.+..+.++.+++..|+.|..+++|+++|+..+ ...+||+|++|+||+++|.
T Consensus 312 ~~~~~~~lGIIPaGSgN~~a~~~~g~~dp~taa~~Ii~G~~~~lDig~V~~~~~~~~~~~~~~~ryf~s~ag~Gf~gdVi 391 (601)
T PLN02204 312 FPNERFRFGIIPAGSTDAIVMCTTGERDPVTSALHIILGRRVCLDIAQVVRWKTTSTSEIEPYVRYAASFAGYGFYGDVI 391 (601)
T ss_pred ccCCCceEEEECCccHHHHHHHccCCCCHHHHHHHHHhCCCeEeeEEEEecccccccccccccceEEEEEeecchHHHHH
Confidence 01356899999999999999998889999999999999999999999997522 1248999999999999999
Q ss_pred cccccccccCchhHHHHHHHHHHhCCCccEEEEECCEEEE
Q 025520 210 YYASRYKRFGNLCYVIGALQAFMGHRNQDLRVKVSSCLYI 249 (251)
Q Consensus 210 ~~~~~~~~~G~l~Y~~~~~~~~~~~~~~~~~i~~dg~~~~ 249 (251)
...+++|++|+++|.+++++.|++++.++++|++|++.+.
T Consensus 392 ~esek~R~mG~~rY~~~g~k~~~~~r~y~~~V~~d~~~~~ 431 (601)
T PLN02204 392 SESEKYRWMGPKRYDYAGTKVFLKHRSYEAEVAYLETESE 431 (601)
T ss_pred HHhhhhcccchHHHHHHHHHHHHhCCCceEEEEECCeEee
Confidence 9999999999999999999999999999999999998653
No 12
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=100.00 E-value=5.1e-36 Score=266.47 Aligned_cols=185 Identities=28% Similarity=0.416 Sum_probs=163.4
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l 125 (251)
++++.||+||.||+++..+.|+++++.|++. ++++.++.|+..+++.+++++...+++|.||++|||||+++|+|+|
T Consensus 1 ~~~~~ii~Np~sg~~~~~~~~~~i~~~l~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDGTl~~v~~~l 77 (293)
T TIGR00147 1 MAEAPAILNPTAGKSNDNKPLREVIMLLREE---GMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGDGTINEVVNAL 77 (293)
T ss_pred CceEEEEECCCccchhhHHHHHHHHHHHHHC---CCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCCChHHHHHHHH
Confidence 5799999999999988888899988888764 4567778888888888888777777899999999999999999999
Q ss_pred HhCCcccccccccccCCceEEEecCCChhHHhhhcCCCCCHHHHHHHHHcCceeeeeEEEEEcCCCCceE-EEEEecccc
Q 025520 126 FSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRSWVDVGVINGETGEPHY-FINVADLHL 204 (251)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~al~~i~~g~~~~iDvg~v~~~~~~~~~-f~n~~~iG~ 204 (251)
... ...++||+||.||+|+||++|+++.++.++++.+.++..+++|++++++ +| |+|++++|+
T Consensus 78 ~~~-----------~~~~~lgiiP~Gt~N~~a~~l~i~~~~~~~~~~l~~~~~~~~Dlg~v~~-----~~~fln~~g~G~ 141 (293)
T TIGR00147 78 IQL-----------DDIPALGILPLGTANDFARSLGIPEDLDKAAKLVIAGDARAIDMGQVNK-----QYCFINMAGGGF 141 (293)
T ss_pred hcC-----------CCCCcEEEEcCcCHHHHHHHcCCCCCHHHHHHHHHcCCceEEEEEEECC-----eEEEEEEEeech
Confidence 742 2347999999999999999999999999999999999999999999998 89 999999999
Q ss_pred hhhhcccc--ccccccCchhHHHHHHHHHHhCCCccEEEEECCEEEE
Q 025520 205 SAKAGYYA--SRYKRFGNLCYVIGALQAFMGHRNQDLRVKVSSCLYI 249 (251)
Q Consensus 205 ~a~v~~~~--~~~~~~G~l~Y~~~~~~~~~~~~~~~~~i~~dg~~~~ 249 (251)
++++.... +.++++|+++|++++++.+.++++++++|++||++++
T Consensus 142 ~a~v~~~~~~~~k~~~g~~~Y~~~~l~~l~~~~~~~~~i~~d~~~~~ 188 (293)
T TIGR00147 142 GTEITTETPEKLKAALGSLSYILSGLMRMDTLQPFRCEIRGEGEHWQ 188 (293)
T ss_pred hhHhHhhCCHHHHhccchHHHHHHHHHHHhhCCCeeEEEEECCeEEE
Confidence 99987654 2345689999999999999999999999999999875
No 13
>PRK12361 hypothetical protein; Provisional
Probab=100.00 E-value=1.8e-35 Score=283.63 Aligned_cols=180 Identities=25% Similarity=0.388 Sum_probs=162.7
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNG 124 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~ 124 (251)
-+++++||+||.||+++..+.|+++++.|+.. +++.++.|+..+++.++++++..+++|.||++|||||||+|+|+
T Consensus 241 ~~~~~~iI~NP~SG~g~~~~~~~~i~~~L~~~----~~~~v~~t~~~~~a~~la~~~~~~~~d~Viv~GGDGTl~ev~~~ 316 (547)
T PRK12361 241 IHKRAWLIANPVSGGGKWQEYGEQIQRELKAY----FDLTVKLTTPEISAEALAKQARKAGADIVIACGGDGTVTEVASE 316 (547)
T ss_pred cCCceEEEECCCCCCCcHHHHHHHHHHHHhcC----CceEEEECCCCccHHHHHHHHHhcCCCEEEEECCCcHHHHHHHH
Confidence 36899999999999999888899888888763 56777889999999999999888889999999999999999999
Q ss_pred HHhCCcccccccccccCCceEEEecCCChhHHhhhc-CCCC---CHHHHHHHHHcCceeeeeEEEEEcCCCCceEEEEEe
Q 025520 125 FFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTF-GWRN---DPYEAVERIAKGVRSWVDVGVINGETGEPHYFINVA 200 (251)
Q Consensus 125 l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~l-g~~~---~~~~al~~i~~g~~~~iDvg~v~~~~~~~~~f~n~~ 200 (251)
|.. .+++||+||+||+|||||++ |++. ++.++++.|.+|..+++|++++++ ++|+|++
T Consensus 317 l~~-------------~~~~lgiiP~GTgNdfAr~L~gi~~~~~~~~~a~~~i~~g~~~~iD~g~vn~-----~~fln~a 378 (547)
T PRK12361 317 LVN-------------TDITLGIIPLGTANALSHALFGLGSKLIPVEQACDNIIQGHTQRIDTARCND-----RLMLLLV 378 (547)
T ss_pred Hhc-------------CCCCEEEecCCchhHHHHHhcCCCCCCccHHHHHHHHHhCCCeEEEEEEEcC-----eEEEEEE
Confidence 973 35899999999999999999 8873 799999999999999999999998 8999999
Q ss_pred cccchhhhccccc--cccccCchhHHHHHHHHHHhCCCccEEEEECCE
Q 025520 201 DLHLSAKAGYYAS--RYKRFGNLCYVIGALQAFMGHRNQDLRVKVSSC 246 (251)
Q Consensus 201 ~iG~~a~v~~~~~--~~~~~G~l~Y~~~~~~~~~~~~~~~~~i~~dg~ 246 (251)
++|+|+++....+ +++++|+++|+..+++.+.++++++++|++||+
T Consensus 379 giG~da~v~~~~~~~~k~~~G~laY~~~~~~~l~~~~~~~l~i~~dg~ 426 (547)
T PRK12361 379 GIGFEQKMIESADRERKNALGQLAYLDGLWRAVNENETLTLTVTLDDA 426 (547)
T ss_pred eechhHHHHHhccHHHHhccCHHHHHHHHHHHhhcCCCeeEEEEECCC
Confidence 9999999987653 456689999999999999999999999999987
No 14
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-33 Score=262.38 Aligned_cols=198 Identities=29% Similarity=0.462 Sum_probs=179.6
Q ss_pred CCCCCCCCCeEEEEEcCCCCCCChhhHHHH-HHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCch
Q 025520 39 GAASSSRRRDLVFVVNPRGASGRTGKEWKK-LLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGT 117 (251)
Q Consensus 39 ~~~~~~~~~~i~vivNP~sg~g~~~~~~~~-i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGT 117 (251)
+...+++.++++||+||++|+|++.++|++ +.+.|.. +++++++..|+.+.||+++++.+...++|.||++||||+
T Consensus 172 ~~~~~~r~~~lLV~iNP~gGkGka~~~F~~~v~Pll~~---A~i~~evv~T~~~~HArei~rt~dl~kyDgIv~vsGDGl 248 (579)
T KOG1116|consen 172 SVDSLKRPRRLLVFINPFGGKGKAKKLFKNHVEPLLSE---AGISFEVVLTTRPNHAREIVRTLDLGKYDGIVCVSGDGL 248 (579)
T ss_pred cccccCCCccEEEEECCCCCCccHHHHHHhhhhhhhhh---cCceEEEEEecCccHHHHHHHhhhccccceEEEecCCcC
Confidence 457788999999999999999999999975 5567765 468899999999999999999998889999999999999
Q ss_pred HHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhhcCCCCC---HHHHHHHHHcCceeeeeEEEEEcCCCCce
Q 025520 118 LHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRND---PYEAVERIAKGVRSWVDVGVINGETGEPH 194 (251)
Q Consensus 118 l~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~---~~~al~~i~~g~~~~iDvg~v~~~~~~~~ 194 (251)
++||+|||+.+. ++....++|||+||+||||+|++++.+..+ +..+...+++|...++|+..+...+...+
T Consensus 249 ~hEVlNGLl~R~------D~~~~~klPigiiP~GSGNala~Sv~~~~~~~~~~~a~l~iirg~~t~~dv~~v~~~~~~~~ 322 (579)
T KOG1116|consen 249 LHEVLNGLLERP------DWEAAVKLPIGIIPCGSGNALAKSVLWTNGPDLPLLATLLIIRGRLTPMDVSVVEYAGKDRH 322 (579)
T ss_pred HHHhhhcccccc------chhhHhcCceeEeecCCccHHHHHhhcccCcccchHHHHHHHccCCCchheeehhhccCcce
Confidence 999999999765 477788999999999999999999998874 77888889999999999999988766668
Q ss_pred EEEEEecccchhhhccccccccccCchhHHHHHHHHHHhCCCccEEEEECC
Q 025520 195 YFINVADLHLSAKAGYYASRYKRFGNLCYVIGALQAFMGHRNQDLRVKVSS 245 (251)
Q Consensus 195 ~f~n~~~iG~~a~v~~~~~~~~~~G~l~Y~~~~~~~~~~~~~~~~~i~~dg 245 (251)
|++++++|||.|++..++|++|++|..||.+.++..++..+.|+.+|++..
T Consensus 323 fSfLs~~wGlIADiDI~SEk~R~mG~~Rf~lg~~~rl~~lr~Y~gri~ylp 373 (579)
T KOG1116|consen 323 FSFLSAAWGLIADVDIESEKYRWMGPARFTLGAFLRLIQLRKYKGRIEYLP 373 (579)
T ss_pred EEEEeeeeeeEEecccchHHHHhhcchhhhHHHHHHHHhccCCCceEEEec
Confidence 889999999999999999999999999999999999999999988888754
No 15
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=99.95 E-value=1e-26 Score=183.27 Aligned_cols=127 Identities=38% Similarity=0.626 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCC-CEEEEEeCCchHHHHHHHHH
Q 025520 48 DLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGA-DAVIAVGGDGTLHEVVNGFF 126 (251)
Q Consensus 48 ~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~-d~ivv~GGDGTl~~vln~l~ 126 (251)
|++||+||+||++++. |+++++.|+... .++.++.|+..+++.++++....+.. |.||++|||||+|+++|+|+
T Consensus 1 k~~vi~Np~sG~~~~~--~~~v~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ivv~GGDGTl~~vv~~l~ 75 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAK--WKKVEPALRAAG---IDYEVIETESAGHAEALARILALDDYPDVIVVVGGDGTLNEVVNGLM 75 (130)
T ss_dssp SEEEEEETTSTTSHHH--HHHHHHHHHHTT---CEEEEEEESSTTHHHHHHHHHHHTTS-SEEEEEESHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCCchh--HHHHHHHHHHcC---CceEEEEEeccchHHHHHHHHhhccCccEEEEEcCccHHHHHHHHHh
Confidence 6899999999998876 688888888753 45667888888888888874444555 99999999999999999998
Q ss_pred hCCcccccccccccCCceEEEecCCChhHHhhhcCCCCCHHH-HHHHHHcCceeeeeEEEEEc
Q 025520 127 SAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYE-AVERIAKGVRSWVDVGVING 188 (251)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~-al~~i~~g~~~~iDvg~v~~ 188 (251)
... ...+++|++||+||+|+||++++++.++.. ++..+..+..+++|+++++.
T Consensus 76 ~~~---------~~~~~~l~iiP~GT~N~~ar~lg~~~~~~~~a~~~~~~~~~~~~d~~~v~~ 129 (130)
T PF00781_consen 76 GSD---------REDKPPLGIIPAGTGNDFARSLGIPSDPEANAALLIILGRVRKIDVGKVNT 129 (130)
T ss_dssp TST---------SSS--EEEEEE-SSS-HHHHHTT--SSHHH-HHHHHHHSEEEEEEEEEETT
T ss_pred hcC---------CCccceEEEecCCChhHHHHHcCCCCCcHHHHHHHHHhCCCcEeEEEEeCC
Confidence 643 122789999999999999999999999988 77777888888999999864
No 16
>KOG1115 consensus Ceramide kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.91 E-value=8.5e-25 Score=195.34 Aligned_cols=198 Identities=23% Similarity=0.378 Sum_probs=166.3
Q ss_pred CCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHH---HcCCCEEEEEeCCchHH
Q 025520 43 SSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAI---KEGADAVIAVGGDGTLH 119 (251)
Q Consensus 43 ~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~---~~~~d~ivv~GGDGTl~ 119 (251)
-+|+|.++||+||.+|+|++.++|+.+.+.+-. ..+.+.++.|+...||.+.+-++. -..+|-||++||||-+|
T Consensus 155 ~~RPknllvFinPfgGkG~g~ki~e~V~~~F~l---a~v~tkvivTErAnhA~d~~~ei~~~~~~~yDGiv~VGGDG~Fn 231 (516)
T KOG1115|consen 155 VERPKNLLVFINPFGGKGNGSKIWETVSKIFIL---AKVNTKVIVTERANHAFDVMAEIQNKELHTYDGIVAVGGDGFFN 231 (516)
T ss_pred hcCCccEEEEEcCCCCCCcccchhhhhhhhEEe---eecceeEEEEccccchhhhhhhCCHhhhhhcccEEEecCchhHH
Confidence 579999999999999999999999986665432 136677899999999999998876 34789999999999999
Q ss_pred HHHHHHHhCCccc-----cccc-ccccCCceEEEecCCChhHHhhhcCCCCCHHHHHHHHHcCceeeeeEEEEEcCCCCc
Q 025520 120 EVVNGFFSAGKLV-----TNHN-RESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRSWVDVGVINGETGEP 193 (251)
Q Consensus 120 ~vln~l~~~~~~~-----~~~~-~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~al~~i~~g~~~~iDvg~v~~~~~~~ 193 (251)
|++||++.+.... ++++ ...-..+.+||||+||.|...-......|+...+-.|+-|...-+|+-.|.....--
T Consensus 232 EiL~G~llrtQ~~ag~~i~~P~~~lv~~~~RfGiIpAGStd~iv~~t~gt~D~~TSAlHI~lG~~l~vDVctVht~~kLi 311 (516)
T KOG1115|consen 232 EILNGYLLRTQEVAGFRIEDPDHPLVSERPRFGIIPAGSTDAIVMCTTGTRDPVTSALHIILGRKLFVDVCTVHTIEKLI 311 (516)
T ss_pred HHHhhhhhhhhhhcCcccCCCCCcccCCCceeeeecCCCcCeEEEEeccCCccccceeeeEeccceeeeeeeeeecchhe
Confidence 9999998754221 1111 223346889999999999998777666789888889999999999999987533335
Q ss_pred eEEEEEecccchhhhccccccccccCchhHHHHHHHHHHhCCCccEEEEE
Q 025520 194 HYFINVADLHLSAKAGYYASRYKRFGNLCYVIGALQAFMGHRNQDLRVKV 243 (251)
Q Consensus 194 ~~f~n~~~iG~~a~v~~~~~~~~~~G~l~Y~~~~~~~~~~~~~~~~~i~~ 243 (251)
||..+.+|.||.+++...+|+|||+|+.+|.++++++|++++.++-+|..
T Consensus 312 RysaSa~gYGFyGDvl~dSEKYRWmGp~RYDfsglKtflkH~~YegeVsF 361 (516)
T KOG1115|consen 312 RYSASAAGYGFYGDVLSDSEKYRWMGPKRYDFSGLKTFLKHRSYEGEVSF 361 (516)
T ss_pred eeehhhhcccccchhhhhhhhhhccCchhhhhHHHHHHHhccccceEEEe
Confidence 89999999999999999999999999999999999999999999888864
No 17
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=99.89 E-value=8.9e-23 Score=159.75 Aligned_cols=106 Identities=29% Similarity=0.496 Sum_probs=76.2
Q ss_pred EEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCC
Q 025520 50 VFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAG 129 (251)
Q Consensus 50 ~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~ 129 (251)
+||+||+||++++.+.+.++...+.. ..+....++...++.++++++ ..+|.|+++|||||+|+++|+|....
T Consensus 1 lvi~NP~sG~~~~~~~~~~~~~~l~~-----~~v~~t~~~~~~~~~~~~~~~--~~~d~vvv~GGDGTi~~vvn~l~~~~ 73 (124)
T smart00046 1 LVFVNPKSGGGKGVKLLRKFRLLLNP-----AQVFDLTKKGPAAALVIFRDL--PKFDRVLVCGGDGTVGWVLNALDKRE 73 (124)
T ss_pred CEEEcCCCCCCccHHHHHHHHHHcCC-----ceEEEEecCChHHHHHHHhhc--CcCCEEEEEccccHHHHHHHHHHhcc
Confidence 48999999999988777766544432 223222223344555554444 35889999999999999999998532
Q ss_pred cccccccccccCCceEEEecCCChhHHhhhcCCCCCHHHHH
Q 025520 130 KLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAV 170 (251)
Q Consensus 130 ~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~al 170 (251)
. ....+||++||+||+||||++||++.++.++.
T Consensus 74 ~--------~~~~~plgiiP~GTgNdfar~lgi~~~~~~~~ 106 (124)
T smart00046 74 L--------PLPEPPVAVLPLGTGNDLARSLGWGGGYDGEK 106 (124)
T ss_pred c--------ccCCCcEEEeCCCChhHHHHHcCCCCCccccc
Confidence 1 11228999999999999999999998776543
No 18
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.87 E-value=1.3e-21 Score=185.01 Aligned_cols=177 Identities=20% Similarity=0.319 Sum_probs=129.3
Q ss_pred CCCCCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCchH
Q 025520 40 AASSSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTL 118 (251)
Q Consensus 40 ~~~~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTl 118 (251)
.+..+...|++||+||+||+.++.....+ ++.++. ..++....... +.....+.++. ...+|+|+|||||+
T Consensus 265 ~~~~~~~~PLlVfvNpKSGg~~G~~ll~~----f~~lLn-p~QVfdl~~~~~p~~gL~l~~~~---~~~riLVcGGDGTv 336 (634)
T KOG1169|consen 265 VTDPPDWRPLLVFVNPKSGGQQGERLLRR----FRYLLN-PVQVFDLLKRGGPRPGLTLFRDV---PDFRILVCGGDGTV 336 (634)
T ss_pred cCCCCCCcceEEEEecCCcccccHHHHHH----HHHhcC-hhhEEecccCCCCchhHHHHHhC---CcceEEEecCCCcc
Confidence 35677888999999999999888765444 444443 24555444443 66665555544 34499999999999
Q ss_pred HHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhhcCCCC----C---HHHHHHHHHcCceeeeeEEEEEcCCC
Q 025520 119 HEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRN----D---PYEAVERIAKGVRSWVDVGVINGETG 191 (251)
Q Consensus 119 ~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~----~---~~~al~~i~~g~~~~iDvg~v~~~~~ 191 (251)
..|++.+-+... ......+|++|||+|||||++|.|+|.. . +...++.+..+.+..+|-+.+.-...
T Consensus 337 GWVL~~i~~~n~------~~~~~~PpVAilPLGTGNDLsR~l~WGgg~~g~~~~~~~iL~~i~~a~v~~lDrW~v~v~~~ 410 (634)
T KOG1169|consen 337 GWVLGCIDKLNK------QNAIPPPPVAILPLGTGNDLSRVLRWGGGYPGEDRNLIKILKDIEEAPVTKLDRWKVLVEPQ 410 (634)
T ss_pred hhhhhhHHHhhc------cccCCCCCeEEEecCCCCchHhhcCCCCCCCcchhhHHHHHHhhhhccceecceeeEEeecc
Confidence 999999975321 1123478999999999999999999863 2 67788888889999999999853211
Q ss_pred ------------------CceEEEEEecccchhhhccccccc----------cccCchhHHHHHHHH
Q 025520 192 ------------------EPHYFINVADLHLSAKAGYYASRY----------KRFGNLCYVIGALQA 230 (251)
Q Consensus 192 ------------------~~~~f~n~~~iG~~a~v~~~~~~~----------~~~G~l~Y~~~~~~~ 230 (251)
...+|.|++|||+||.|++.+... |.++++.|+-.+.+.
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~imnNYFSIGvDA~Ia~~FH~~Re~~PekF~Sr~~NKl~Yf~~G~q~ 477 (634)
T KOG1169|consen 411 SGELVQYSLKPPEKGDPVPYGIMNNYFSIGVDAQIAYGFHNMREKNPEKFNSRMKNKLWYFEFGTQE 477 (634)
T ss_pred ccccccccccCCCcCCCCCeeeEeeeeeecccHHHHHHHHHHhhhChHhhcchhhceeeeeeecchh
Confidence 135789999999999999876422 235788888888443
No 19
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=99.87 E-value=1.2e-21 Score=181.16 Aligned_cols=193 Identities=22% Similarity=0.347 Sum_probs=146.8
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCch
Q 025520 38 HGAASSSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGT 117 (251)
Q Consensus 38 ~~~~~~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGT 117 (251)
..++.|+.+|+++||+||+||.+++.+.+..+..+|..+ +++.+....|.++.++-++.. .=+|++||||||
T Consensus 357 ikPtsSplmkPLLVFVNPKSGGNqGsK~lq~f~WyLNPR-----QVFDlsq~GPK~aLEmyRKV~---nLRILaCGGDGT 428 (1004)
T KOG0782|consen 357 IKPTSSPLMKPLLVFVNPKSGGNQGSKALQTFCWYLNPR-----QVFDLSQLGPKFALEMYRKVV---NLRILACGGDGT 428 (1004)
T ss_pred EccCCCCCCCceEEEecCCCCCcchHHHHHHHHHhcChh-----hheehhccCcHHHHHHHHhcc---ceEEEEecCCCc
Confidence 456679999999999999999999999888777777653 344455567777777766653 248999999999
Q ss_pred HHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhhcCCCC-----CHHHHHHHHHcCceeeeeEEEEEcCC--
Q 025520 118 LHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRN-----DPYEAVERIAKGVRSWVDVGVINGET-- 190 (251)
Q Consensus 118 l~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~-----~~~~al~~i~~g~~~~iDvg~v~~~~-- 190 (251)
+.++++.|-.- .....+|++|+|+|||||+||.++|.. .+...+..+..|....+|-|.+..+.
T Consensus 429 VGWiLStLD~L---------~l~p~PPvailPLGTGNDLARtlnWGGgytDEPvSkil~~ve~gtvVqLDRW~lhvEpNp 499 (1004)
T KOG0782|consen 429 VGWILSTLDNL---------NLPPYPPVAILPLGTGNDLARTLNWGGGYTDEPVSKILQAVEHGTVVQLDRWRLHVEPNP 499 (1004)
T ss_pred eeehhhhhhhc---------CCCCCCCeeEeecCCcchHHHhcccCCCcCcchHHHHHHHHhcCcEEeeeeeeecccCCC
Confidence 99999988532 134568999999999999999999974 24677788888999999999985321
Q ss_pred ---------C-C----ceEEEEEecccchhhhccccccc----------cccCchhHHHHHHHHHHhCCC----ccEEEE
Q 025520 191 ---------G-E----PHYFINVADLHLSAKAGYYASRY----------KRFGNLCYVIGALQAFMGHRN----QDLRVK 242 (251)
Q Consensus 191 ---------~-~----~~~f~n~~~iG~~a~v~~~~~~~----------~~~G~l~Y~~~~~~~~~~~~~----~~~~i~ 242 (251)
+ . -..|.|++++||||.|+.++... |..+++.|.-.++..|+.... ..++|.
T Consensus 500 ~~~pEe~ddG~~~~LPL~VfnNYFSlGfDAHVtLeFHeSReANPekfNSRfrNkmfYaG~afsDfl~rSskDL~khi~vv 579 (1004)
T KOG0782|consen 500 SCNPEEEDDGMQSALPLTVFNNYFSLGFDAHVTLEFHESREANPEKFNSRFRNKMFYAGLAFSDFLKRSSKDLCKHITVV 579 (1004)
T ss_pred CCChhhhcccchhccchhHhhccccccccceEEEEeccccccCHHHHHHHHhhhhhhcchhHHHHHhhhhHHhhhheEEE
Confidence 1 1 13599999999999998765322 334778888888888875433 346777
Q ss_pred ECCEE
Q 025520 243 VSSCL 247 (251)
Q Consensus 243 ~dg~~ 247 (251)
-||..
T Consensus 580 CDG~D 584 (1004)
T KOG0782|consen 580 CDGVD 584 (1004)
T ss_pred ecCcc
Confidence 77743
No 20
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.81 E-value=2.5e-19 Score=160.22 Aligned_cols=204 Identities=18% Similarity=0.213 Sum_probs=150.9
Q ss_pred CCCcccCCCCCCCCCC--CCCCCCCeEEEEEcCCCCCCChhhHHHH-HHHHHHhhcCCCccEEEEecCCccHHHHHHHHH
Q 025520 25 HPMALDLSPNPISHGA--ASSSRRRDLVFVVNPRGASGRTGKEWKK-LLPYLRSRLSVDCNICESLTSGPSHAIDITREA 101 (251)
Q Consensus 25 ~~~~~~~~~~~~~~~~--~~~~~~~~i~vivNP~sg~g~~~~~~~~-i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~ 101 (251)
++||++.+.....+-+ |+..++|+++|++||.+.++..+..+++ .++.|.. +++++.+..|++.++++.+++.+
T Consensus 37 ~~rre~a~~aq~~g~t~vpp~~~~Kkv~V~~Np~ank~~~r~~f~kna~P~lHL---aG~~V~Ivktd~~gqak~l~e~~ 113 (535)
T KOG4435|consen 37 GIRREYAKIAQKYGETTVPPETRPKKVFVLVNPEANKRGCRDQFNKNALPLLHL---AGVQVDIVKTDNQGQAKALAEAV 113 (535)
T ss_pred HHHHHHHHHHHHhccccCCcccccceEEEEechhhccchhhhhhhcccchheee---ccceEEEEecCcHHHHHHHHHHh
Confidence 3566655542222222 5567999999999999988777766653 4566654 36888899999999999999887
Q ss_pred HHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhhcCC-----CC---CHHHHHHHH
Q 025520 102 IKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGW-----RN---DPYEAVERI 173 (251)
Q Consensus 102 ~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~-----~~---~~~~al~~i 173 (251)
.. ..|+|+|+|||||+.||++|+++++ ...+|++++|+|--|.-.++--. .. ...++++.+
T Consensus 114 ~t-~~Dii~VaGGDGT~~eVVTGi~Rrr----------~~~~pv~~~P~G~~~l~~~s~l~~vfe~~d~V~h~~~a~~av 182 (535)
T KOG4435|consen 114 DT-QEDIIYVAGGDGTIGEVVTGIFRRR----------KAQLPVGFYPGGYDNLWLKSMLPSVFENSDDVRHACEAAMAV 182 (535)
T ss_pred cc-CCCeEEEecCCCcHHHhhHHHHhcc----------cccCceeeccCccchHhhhhhchhhhccchHHHHHHHHHHHH
Confidence 64 4599999999999999999999864 46789999999988765544321 11 246778888
Q ss_pred HcCce---eeeeEEEEEcCCCCceEEEEEecccchhhhccccccccccCchhHHHHHHHHHHhCCCccEEEEE
Q 025520 174 AKGVR---SWVDVGVINGETGEPHYFINVADLHLSAKAGYYASRYKRFGNLCYVIGALQAFMGHRNQDLRVKV 243 (251)
Q Consensus 174 ~~g~~---~~iDvg~v~~~~~~~~~f~n~~~iG~~a~v~~~~~~~~~~G~l~Y~~~~~~~~~~~~~~~~~i~~ 243 (251)
++++. .+.||.. .+..-.+-|-++.+++|+.-++.....++|+||+++--.+.++.+++..+.+.+..+
T Consensus 183 ikde~ksv~~fdv~~-~gs~l~P~fgl~glswG~frdi~~~~~KyWYfgplk~~aA~f~s~lk~wpak~e~vv 254 (535)
T KOG4435|consen 183 IKDEKKSVYAFDVTT-EGSTLAPEFGLGGLSWGWFRDIEDTRKKYWYFGPLKRRAAYFWSMLKRWPAKIECVV 254 (535)
T ss_pred hcccccceEEEEecc-CCCccccccccCccchhhhhhhhhhhhheeeecHHHHHHHHHHHHHhcCCCceeEEe
Confidence 88877 5667655 222223567899999999999888888999999997555888888876665555443
No 21
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=99.06 E-value=1.5e-09 Score=96.06 Aligned_cols=134 Identities=14% Similarity=0.081 Sum_probs=86.5
Q ss_pred eEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEE--ecCCccHHHHHH-HHHHHcCCCEEEEEeCCchHHHHHHH
Q 025520 48 DLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICES--LTSGPSHAIDIT-REAIKEGADAVIAVGGDGTLHEVVNG 124 (251)
Q Consensus 48 ~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~--~t~~~~~a~~~~-~~~~~~~~d~ivv~GGDGTl~~vln~ 124 (251)
++.|+.|+.. ..+.+.++++...|+.. ++++.+. .+....+..... .++...++|.+|++|||||+.++++
T Consensus 2 ~v~iv~~~~k--~~~~~~~~~I~~~L~~~---g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDGTlL~a~~- 75 (277)
T PRK03708 2 RFGIVARRDK--EEALKLAYRVYDFLKVS---GYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDGTILRIEH- 75 (277)
T ss_pred EEEEEecCCC--HHHHHHHHHHHHHHHHC---CCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcHHHHHHHH-
Confidence 6888989853 55667778888777764 3444432 122212121111 1233347899999999999999999
Q ss_pred HHhCCcccccccccccCCceEEEecCCChhHHhhhcCCCCCHHHHHHHHHcCcee--eeeEEEEEcCCCCceEEEEEecc
Q 025520 125 FFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRS--WVDVGVINGETGEPHYFINVADL 202 (251)
Q Consensus 125 l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~al~~i~~g~~~--~iDvg~v~~~~~~~~~f~n~~~i 202 (251)
+. ...+||..||.|+. +|..++. +.+..++++.+++|... +.-+..+...+....+++|-+.+
T Consensus 76 ~~-------------~~~~pi~gIn~G~l-GFl~~~~-~~~~~~~l~~i~~g~~~~~~r~~l~~~~~~~~~~~alNdv~v 140 (277)
T PRK03708 76 KT-------------KKDIPILGINMGTL-GFLTEVE-PEETFFALSRLLEGDYFIDERIKLRVYINGENVPDALNEVVI 140 (277)
T ss_pred hc-------------CCCCeEEEEeCCCC-CccccCC-HHHHHHHHHHHHcCCceEEEeEEEEEEECCeEeEEEeeeEEE
Confidence 64 23689999999998 8998887 56788999999998643 22333333211112356665544
No 22
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.99 E-value=2.5e-09 Score=95.93 Aligned_cols=115 Identities=14% Similarity=0.212 Sum_probs=75.8
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNG 124 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~ 124 (251)
+++++.+|+|| ++..+.+.++++...|++. ++++.+..++...+......+.....+|.++++|||||++++++.
T Consensus 2 ~~kkv~lI~n~--~~~~~~~~~~~i~~~L~~~---g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGT~l~~~~~ 76 (305)
T PRK02645 2 QLKQVIIAYKA--GSSQAKEAAERCAKQLEAR---GCKVLMGPSGPKDNPYPVFLASASELIDLAIVLGGDGTVLAAARH 76 (305)
T ss_pred CcCEEEEEEeC--CCHHHHHHHHHHHHHHHHC---CCEEEEecCchhhccccchhhccccCcCEEEEECCcHHHHHHHHH
Confidence 57899999999 4455556666776667653 355544443332211111112223468999999999999999999
Q ss_pred HHhCCcccccccccccCCceEEEecC-CChhHHhhhcCCCCCHHHHHHHHHcCce
Q 025520 125 FFSAGKLVTNHNRESAHSTALGLIPL-GTGSDFARTFGWRNDPYEAVERIAKGVR 178 (251)
Q Consensus 125 l~~~~~~~~~~~~~~~~~~~lgilP~-GTgN~fa~~lg~~~~~~~al~~i~~g~~ 178 (251)
+. ...+|+..|.+ |+-.-++..-....+ .++++.+++|..
T Consensus 77 ~~-------------~~~~pv~gin~~G~lGFL~~~~~~~~~-~~~l~~i~~g~~ 117 (305)
T PRK02645 77 LA-------------PHDIPILSVNVGGHLGFLTHPRDLLQD-ESVWDRLQEDRY 117 (305)
T ss_pred hc-------------cCCCCEEEEecCCcceEecCchhhcch-HHHHHHHHcCCc
Confidence 85 24688999998 786555533211223 789999999874
No 23
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=98.89 E-value=7.6e-09 Score=92.30 Aligned_cols=74 Identities=22% Similarity=0.306 Sum_probs=59.9
Q ss_pred CCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhhcCCCCCHHH
Q 025520 89 SGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYE 168 (251)
Q Consensus 89 ~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~ 168 (251)
++.+|....++++...+.|+|+++|||||..+|++++ ..++|+--||.||-|.+.-..--|.+...
T Consensus 84 tTa~DT~~~~r~~~~~gVdlIvfaGGDGTarDVa~av--------------~~~vPvLGipaGvk~~SgvfA~~P~~aa~ 149 (355)
T COG3199 84 TTAEDTINAVRRMVERGVDLIVFAGGDGTARDVAEAV--------------GADVPVLGIPAGVKNYSGVFALSPEDAAR 149 (355)
T ss_pred ccHHHHHHHHHHHHhcCceEEEEeCCCccHHHHHhhc--------------cCCCceEeeccccceeccccccChHHHHH
Confidence 4567788888999988999999999999999999998 24799999999998776644444555566
Q ss_pred HHHHHHcC
Q 025520 169 AVERIAKG 176 (251)
Q Consensus 169 al~~i~~g 176 (251)
.+..++++
T Consensus 150 l~~~~lkg 157 (355)
T COG3199 150 LLGAFLKG 157 (355)
T ss_pred HHHHHhcc
Confidence 66777887
No 24
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=98.87 E-value=8.5e-10 Score=106.46 Aligned_cols=126 Identities=18% Similarity=0.375 Sum_probs=85.9
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHH
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVN 123 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln 123 (251)
+-..++.+++|.+||..++.++.+++..+|.- .+++.+....+.-+...-..+ ..=+|+||||||++..|+.
T Consensus 192 ~~~spllv~insksgd~qg~~~lrkfkq~lnp-----~qVfdll~~gp~~gL~~f~~~---d~friLvcggdGsv~wvls 263 (1099)
T KOG1170|consen 192 PCGSPLLVFINSKSGDSQGQRFLRKFKQILNP-----IQVFDLIAGGPDFGLTFFSHF---ESFRILVCGGDGSVGWVLS 263 (1099)
T ss_pred CCCCceeEeecccCCCchhHHHHHhhhhhcCH-----HHHHHHHccCcchhhhhhhcc---cceEEEEecCCCCCcchHH
Confidence 44568999999999999988876665544432 223223333443332222211 1228999999999999999
Q ss_pred HHHhCCcccccccccccCCceEEEecCCChhHHhhhcCCCCC------HHHHHHHHHcCceeeeeEEEE
Q 025520 124 GFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRND------PYEAVERIAKGVRSWVDVGVI 186 (251)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~------~~~al~~i~~g~~~~iDvg~v 186 (251)
.+.+-. ...++.++++|+|||||+|+.+||... ....++.+-+..++.+|=+.+
T Consensus 264 ~~ds~~---------lh~kcql~vlplgtgndlarvlgwg~a~~ddt~~p~il~~~eRastkmldrwsv 323 (1099)
T KOG1170|consen 264 AIDRLN---------LHSKCQLAVLPLGTGNDLARVLGWGHAFYDDTLLPQILRTMERASTKMLDRWSV 323 (1099)
T ss_pred HHHhcc---------chhhcccccccCCChHHHHHHhcccccCchhhccHHHHHHHHhhhhhhhhcchh
Confidence 886533 467899999999999999999999732 235556655566666666655
No 25
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.58 E-value=3.9e-07 Score=81.41 Aligned_cols=114 Identities=19% Similarity=0.265 Sum_probs=74.8
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCC---ccHHHHHH-HHHHHcCCCEEEEEeCCchHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSG---PSHAIDIT-REAIKEGADAVIAVGGDGTLHE 120 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~---~~~a~~~~-~~~~~~~~d~ivv~GGDGTl~~ 120 (251)
.++++.|++||.. ..+...++++.+.|++. ++++.+..++. +.+..... .+...+++|.|+++|||||+..
T Consensus 3 ~~~~v~iv~~~~k--~~a~e~~~~i~~~L~~~---giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGt~l~ 77 (295)
T PRK01231 3 SFRNIGLIGRLGS--SSVVETLRRLKDFLLDR---GLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIVVGGDGSLLG 77 (295)
T ss_pred CCCEEEEEecCCC--HHHHHHHHHHHHHHHHC---CCEEEEecchhhhcCcccccccchhhcccCCCEEEEEeCcHHHHH
Confidence 4778999999875 45566677777777653 34544433221 11111111 1222346899999999999999
Q ss_pred HHHHHHhCCcccccccccccCCceEEEecCCChhHHhhhcCCCCCHHHHHHHHHcCce
Q 025520 121 VVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVR 178 (251)
Q Consensus 121 vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~al~~i~~g~~ 178 (251)
+++.+. ...+||.-|..|+- .|-..+.. .+..++++.+++|..
T Consensus 78 ~~~~~~-------------~~~~Pvlgin~G~l-GFl~~~~~-~~~~~~l~~~~~g~~ 120 (295)
T PRK01231 78 AARALA-------------RHNVPVLGINRGRL-GFLTDIRP-DELEFKLAEVLDGHY 120 (295)
T ss_pred HHHHhc-------------CCCCCEEEEeCCcc-cccccCCH-HHHHHHHHHHHcCCc
Confidence 999874 24678888899984 35544443 367888999998863
No 26
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.58 E-value=2.8e-07 Score=82.18 Aligned_cols=112 Identities=19% Similarity=0.289 Sum_probs=72.3
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHH-----H-HHHHHHcCCCEEEEEeCCch
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAID-----I-TREAIKEGADAVIAVGGDGT 117 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~-----~-~~~~~~~~~d~ivv~GGDGT 117 (251)
..++++.|+.|+.. ..+.+..+++...|++. ++++.+.. ...+... . ..+...+++|.++++|||||
T Consensus 3 ~~~~~i~iv~~~~~--~~~~~~~~~i~~~l~~~---g~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~vi~lGGDGT 75 (292)
T PRK03378 3 NHFKCIGIVGHPRH--PTALTTHEMLYHWLTSK---GYEVIVEQ--QIAHELQLKNVKTGTLAEIGQQADLAIVVGGDGN 75 (292)
T ss_pred ccCCEEEEEEeCCC--HHHHHHHHHHHHHHHHC---CCEEEEec--chhhhcCcccccccchhhcCCCCCEEEEECCcHH
Confidence 34788999999864 44555566666667653 34433211 1000000 0 00111236899999999999
Q ss_pred HHHHHHHHHhCCcccccccccccCCceEEEecCCChh-HHhhhcCCCCCHHHHHHHHHcCce
Q 025520 118 LHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGS-DFARTFGWRNDPYEAVERIAKGVR 178 (251)
Q Consensus 118 l~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN-~fa~~lg~~~~~~~al~~i~~g~~ 178 (251)
+..+++.+.. ..+ .+|+.++|| +|...+. +.++.++++.+++|..
T Consensus 76 ~L~aa~~~~~-------------~~~--Pilgin~G~lGFl~~~~-~~~~~~~l~~i~~g~~ 121 (292)
T PRK03378 76 MLGAARVLAR-------------YDI--KVIGINRGNLGFLTDLD-PDNALQQLSDVLEGHY 121 (292)
T ss_pred HHHHHHHhcC-------------CCC--eEEEEECCCCCcccccC-HHHHHHHHHHHHcCCc
Confidence 9999998742 234 466677777 8888887 4578899999999864
No 27
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=98.34 E-value=4.8e-07 Score=80.43 Aligned_cols=112 Identities=25% Similarity=0.287 Sum_probs=72.9
Q ss_pred eEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCcc-----------------------HHHHHHHHHHHc
Q 025520 48 DLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPS-----------------------HAIDITREAIKE 104 (251)
Q Consensus 48 ~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~-----------------------~a~~~~~~~~~~ 104 (251)
|+.||.||.. ..+...++++...|.... ...+.+ ...... +......+...+
T Consensus 1 kVgii~np~~--~~~~~~~~~~~~~L~~~~--~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (285)
T PF01513_consen 1 KVGIIANPNK--PEAIELANELARWLLEKQ--GIEVLV-EGSIAEDILEAIKKRYEVISVEKKLKTLDDTRNALEEMLEE 75 (285)
T ss_dssp -EEEEESSCG--HCCCHHHHHHHHHHHHTT--TEEEEE-EHHHHHSHCCCSHSCCCCCTTSHCCCCTCEEEECCHHHHCC
T ss_pred CEEEEEcCCC--HHHHHHHHHHHHHHHhCC--CEEEEE-ChHHHHHHHHhccccccccccccccccccccchhhhhhccc
Confidence 6899999983 344566777777777651 111111 000000 001123344567
Q ss_pred CCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhhcCCCCCHHHHHHHHHcCcee
Q 025520 105 GADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRS 179 (251)
Q Consensus 105 ~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~al~~i~~g~~~ 179 (251)
++|.++++|||||+..++..+. ...+||--|+.|| +.|...+. +.+..++++.+++|...
T Consensus 76 ~~D~ii~lGGDGT~L~~~~~~~-------------~~~~Pilgin~G~-lgfl~~~~-~~~~~~~l~~~~~g~~~ 135 (285)
T PF01513_consen 76 GVDLIIVLGGDGTFLRAARLFG-------------DYDIPILGINTGT-LGFLTEFE-PEDIEEALEKILAGEYS 135 (285)
T ss_dssp CSSEEEEEESHHHHHHHHHHCT-------------TST-EEEEEESSS-STSSSSEE-GCGHHHHHHHHHHTHCE
T ss_pred CCCEEEEECCCHHHHHHHHHhc-------------cCCCcEEeecCCC-ccccccCC-HHHHHHHHHHHhcCCeE
Confidence 8999999999999999999874 2479999999999 55655553 34788999999997653
No 28
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=98.23 E-value=9.6e-06 Score=72.37 Aligned_cols=114 Identities=18% Similarity=0.212 Sum_probs=71.2
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCc-cHHHH---HHHHHHHcCCCEEEEEeCCchHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGP-SHAID---ITREAIKEGADAVIAVGGDGTLHE 120 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~-~~a~~---~~~~~~~~~~d~ivv~GGDGTl~~ 120 (251)
.++++.||.|+.. ..+.+.++++...|+.. ++++.+...... .+... ...+...+++|.+|++|||||+..
T Consensus 4 ~~~~v~iv~~~~~--~~~~e~~~~i~~~L~~~---g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGt~l~ 78 (291)
T PRK02155 4 QFKTVALIGRYQT--PGIAEPLESLAAFLAKR---GFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVLGGDGTMLG 78 (291)
T ss_pred cCCEEEEEecCCC--HHHHHHHHHHHHHHHHC---CCEEEEecchhhhcCcccccccChhHhccCCCEEEEECCcHHHHH
Confidence 4678999999864 44555666676666653 344333221110 00000 011122346899999999999999
Q ss_pred HHHHHHhCCcccccccccccCCceEEEecCCChhHHhhhcCCCCCHHHHHHHHHcCce
Q 025520 121 VVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVR 178 (251)
Q Consensus 121 vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~al~~i~~g~~ 178 (251)
+++.+.. .++|+--|..|+-. |-..+.. .++.++++.+++|..
T Consensus 79 ~~~~~~~-------------~~~pilGIn~G~lG-FL~~~~~-~~~~~~l~~~~~g~~ 121 (291)
T PRK02155 79 IGRQLAP-------------YGVPLIGINHGRLG-FITDIPL-DDMQETLPPMLAGNY 121 (291)
T ss_pred HHHHhcC-------------CCCCEEEEcCCCcc-ccccCCH-HHHHHHHHHHHcCCc
Confidence 9998842 35777778888843 4434433 357788999998874
No 29
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.15 E-value=1.8e-05 Score=70.52 Aligned_cols=110 Identities=20% Similarity=0.155 Sum_probs=70.0
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHH--HH-HHHHHHcCCCEEEEEeCCchHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAI--DI-TREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~--~~-~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
.++++.|+.||. + .+.+.++++...|++. ++++.+.... ..... .. ..++ ..++|.++++|||||+-.+
T Consensus 9 ~~~~i~ii~~~~--~-~~~~~~~~i~~~l~~~---g~~~~~~~~~-~~~~~~~~~~~~~~-~~~~Dlvi~iGGDGT~L~a 80 (287)
T PRK14077 9 NIKKIGLVTRPN--V-SLDKEILKLQKILSIY---KVEILLEKES-AEILDLPGYGLDEL-FKISDFLISLGGDGTLISL 80 (287)
T ss_pred cCCEEEEEeCCc--H-HHHHHHHHHHHHHHHC---CCEEEEecch-hhhhcccccchhhc-ccCCCEEEEECCCHHHHHH
Confidence 378899999996 3 5666677777777653 3444321110 00000 00 0111 2368999999999999999
Q ss_pred HHHHHhCCcccccccccccCCceEEEecCCChhHHhhhcCCCCCHHHHHHHHHcCc
Q 025520 122 VNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGV 177 (251)
Q Consensus 122 ln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~al~~i~~g~ 177 (251)
+..+. ...+||--+.+|+ -.|-.++.. .+..++++.+++|.
T Consensus 81 a~~~~-------------~~~~PilGIN~G~-lGFLt~~~~-~~~~~~l~~i~~g~ 121 (287)
T PRK14077 81 CRKAA-------------EYDKFVLGIHAGH-LGFLTDITV-DEAEKFFQAFFQGE 121 (287)
T ss_pred HHHhc-------------CCCCcEEEEeCCC-cccCCcCCH-HHHHHHHHHHHcCC
Confidence 99774 2357777788887 444444433 36778899999986
No 30
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.12 E-value=2.4e-05 Score=70.23 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=71.8
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHH----HH---------H-HHHHHcCCCEE
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAI----DI---------T-REAIKEGADAV 109 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~----~~---------~-~~~~~~~~d~i 109 (251)
.+++++.|+.|+.. ..+.+..+++...|++. ++++.+.... ..... .. . .+...+++|.+
T Consensus 3 ~~~~~I~iv~~~~~--~~~~~~~~~l~~~L~~~---g~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 76 (306)
T PRK03372 3 TASRRVLLVAHTGR--DEATEAARRVAKQLGDA---GIGVRVLDAE-AVDLGATHPAPDDFRAMEVVDADPDAADGCELV 76 (306)
T ss_pred CCccEEEEEecCCC--HHHHHHHHHHHHHHHHC---CCEEEEeech-hhhhcccccccccccccccccchhhcccCCCEE
Confidence 46788999999864 44455566666666653 3444322211 00000 00 0 01122368999
Q ss_pred EEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhhcCCCCCHHHHHHHHHcCce
Q 025520 110 IAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVR 178 (251)
Q Consensus 110 vv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~al~~i~~g~~ 178 (251)
|++|||||+..++..+. ...+||.-|.+|+-. |-..+. +.+..++++.+++|..
T Consensus 77 i~lGGDGT~L~aar~~~-------------~~~~PilGIN~G~lG-FL~~~~-~~~~~~~l~~i~~g~y 130 (306)
T PRK03372 77 LVLGGDGTILRAAELAR-------------AADVPVLGVNLGHVG-FLAEAE-AEDLDEAVERVVDRDY 130 (306)
T ss_pred EEEcCCHHHHHHHHHhc-------------cCCCcEEEEecCCCc-eeccCC-HHHHHHHHHHHHcCCc
Confidence 99999999999999874 246788889999853 333333 2467889999999874
No 31
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.12 E-value=2.2e-05 Score=70.52 Aligned_cols=111 Identities=16% Similarity=0.137 Sum_probs=69.0
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHH--H-------------HHHHHHHcCCCEEE
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAI--D-------------ITREAIKEGADAVI 110 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~--~-------------~~~~~~~~~~d~iv 110 (251)
|+++.|+.|+.. ..+.+..+++...|++. ++++.+.. ....... . -..++ .+++|.++
T Consensus 1 m~~igiv~n~~~--~~~~~~~~~l~~~L~~~---g~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Dlvi 73 (305)
T PRK02649 1 MPKAGIIYNDGK--PLAVRTAEELQDKLEAA---GWEVVRAS-SSGGILGYANPDQPVCHTGIDQLVPPGF-DSSMKFAI 73 (305)
T ss_pred CCEEEEEEcCCC--HHHHHHHHHHHHHHHHC---CCEEEEec-chhhhcCccccccccccccccccChhhc-ccCcCEEE
Confidence 568999999853 34555666676666653 34443211 1100000 0 00111 23589999
Q ss_pred EEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhhcCCCCCHHHHHHHHHcCce
Q 025520 111 AVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVR 178 (251)
Q Consensus 111 v~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~al~~i~~g~~ 178 (251)
++|||||+-.++..+. ...+||--|.+|+ -.|-.++.. .+..++++.+++|..
T Consensus 74 ~iGGDGTlL~aar~~~-------------~~~iPilGIN~G~-lGFLt~~~~-~~~~~~l~~l~~g~y 126 (305)
T PRK02649 74 VLGGDGTVLSAARQLA-------------PCGIPLLTINTGH-LGFLTEAYL-NQLDEAIDQVLAGQY 126 (305)
T ss_pred EEeCcHHHHHHHHHhc-------------CCCCcEEEEeCCC-CcccccCCH-HHHHHHHHHHHcCCc
Confidence 9999999999999874 2457777788887 334444433 467889999999864
No 32
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.03 E-value=7.6e-05 Score=65.65 Aligned_cols=121 Identities=17% Similarity=0.179 Sum_probs=74.0
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l 125 (251)
++++.++.|+.. .+.+..+++...|++. ++++. .. .++.|.++++|||||+-.++..+
T Consensus 2 ~~~i~iv~~~~~---~a~~~~~~l~~~l~~~---g~~~~--~~--------------~~~~D~vi~lGGDGT~L~a~~~~ 59 (264)
T PRK03501 2 RRNLFFFYKRDK---ELVEKVKPLKKIAEEY---GFTVV--DH--------------PKNANIIVSIGGDGTFLQAVRKT 59 (264)
T ss_pred CcEEEEEECCCH---HHHHHHHHHHHHHHHC---CCEEE--cC--------------CCCccEEEEECCcHHHHHHHHHh
Confidence 457888888764 4555666666666653 23332 11 03579999999999999999876
Q ss_pred HhCCcccccccccccCCceEEEecC-CChhHHhhhcCCCCCHHHHHHHHHcCce--eeeeEEEEEcCCCCceEEEEEecc
Q 025520 126 FSAGKLVTNHNRESAHSTALGLIPL-GTGSDFARTFGWRNDPYEAVERIAKGVR--SWVDVGVINGETGEPHYFINVADL 202 (251)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~lgilP~-GTgN~fa~~lg~~~~~~~al~~i~~g~~--~~iDvg~v~~~~~~~~~f~n~~~i 202 (251)
.. ...+|+--+.+ |+- .|-.++.. .+..++++.+.+|.. ++..+..+...+....+.+|-+.+
T Consensus 60 ~~------------~~~~pilgIn~~G~l-GFL~~~~~-~~~~~~l~~i~~g~~~~~~r~~l~~~v~~~~~~~alNevvi 125 (264)
T PRK03501 60 GF------------REDCLYAGISTKDQL-GFYCDFHI-DDLDKMIQAITKEEIEVRKYPTIEVTVDGSTSFYCLNEFSI 125 (264)
T ss_pred cc------------cCCCeEEeEecCCCC-eEcccCCH-HHHHHHHHHHHcCCcEEEEeeeEEEEECCccceEEEEEEEE
Confidence 42 12467666777 763 33334433 367888999999864 233333443221123467777766
No 33
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.00 E-value=6.8e-05 Score=67.06 Aligned_cols=114 Identities=16% Similarity=0.201 Sum_probs=69.3
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCc-cHHH-------HH-HHHHHHcCCCEEEEEeCC
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGP-SHAI-------DI-TREAIKEGADAVIAVGGD 115 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~-~~a~-------~~-~~~~~~~~~d~ivv~GGD 115 (251)
.++++.||.||.. ..+.+.++++...|++. ++++.+...... +... .. -.+......|.++++|||
T Consensus 4 ~~~~i~ii~~~~~--~~~~~~~~~l~~~L~~~---g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGD 78 (296)
T PRK04539 4 PFHNIGIVTRPNT--PDIQDTAHTLITFLKQH---GFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAVLGGD 78 (296)
T ss_pred CCCEEEEEecCCC--HHHHHHHHHHHHHHHHC---CCEEEEecccccccchhccccccccccchhhcCcCCCEEEEECCc
Confidence 4788999999864 44556666676667653 344432211100 0000 00 001112358999999999
Q ss_pred chHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhhcCCCCCHHHHHHHHHcCce
Q 025520 116 GTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVR 178 (251)
Q Consensus 116 GTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~al~~i~~g~~ 178 (251)
||+-.++..+.. ..+||--+..|+-. |-..+. +.+..++++.+++|..
T Consensus 79 GT~L~aa~~~~~-------------~~~PilGIN~G~lG-FL~~~~-~~~~~~~l~~i~~g~~ 126 (296)
T PRK04539 79 GTFLSVAREIAP-------------RAVPIIGINQGHLG-FLTQIP-REYMTDKLLPVLEGKY 126 (296)
T ss_pred HHHHHHHHHhcc-------------cCCCEEEEecCCCe-EeeccC-HHHHHHHHHHHHcCCc
Confidence 999999998742 35787778888722 222222 2357788899998853
No 34
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.91 E-value=9.5e-05 Score=66.02 Aligned_cols=110 Identities=17% Similarity=0.174 Sum_probs=67.9
Q ss_pred eEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHH----------HH-HHHHHHcCCCEEEEEeCCc
Q 025520 48 DLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAI----------DI-TREAIKEGADAVIAVGGDG 116 (251)
Q Consensus 48 ~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~----------~~-~~~~~~~~~d~ivv~GGDG 116 (251)
++.|+.|+.. ..+.+..+++...|++. ++++.+... ...... .. ..+...+++|.+|++||||
T Consensus 2 ~igii~~~~~--~~~~~~~~~i~~~l~~~---g~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDG 75 (292)
T PRK01911 2 KIAIFGQTYQ--ESASPYIQELFDELEER---GAEVLIEEK-FLDFLKQDLKFHPSYDTFSDNEELDGSADMVISIGGDG 75 (292)
T ss_pred EEEEEeCCCC--HHHHHHHHHHHHHHHHC---CCEEEEecc-hhhhhccccccccccccccchhhcccCCCEEEEECCcH
Confidence 5889999853 44555666676667653 344432111 000000 00 0011223689999999999
Q ss_pred hHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhhcCCCCCHHHHHHHHHcCce
Q 025520 117 TLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVR 178 (251)
Q Consensus 117 Tl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~al~~i~~g~~ 178 (251)
|+-.++..+. ...+||--+.+|+- .|-.++.. .+..++++.+++|..
T Consensus 76 T~L~aa~~~~-------------~~~~PilGIN~G~l-GFLt~~~~-~~~~~~l~~i~~g~~ 122 (292)
T PRK01911 76 TFLRTATYVG-------------NSNIPILGINTGRL-GFLATVSK-EEIEETIDELLNGDY 122 (292)
T ss_pred HHHHHHHHhc-------------CCCCCEEEEecCCC-CcccccCH-HHHHHHHHHHHcCCc
Confidence 9999999874 23578777899983 44444432 367888999999874
No 35
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=97.82 E-value=0.00017 Score=68.31 Aligned_cols=115 Identities=18% Similarity=0.280 Sum_probs=69.8
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCcc--------HHHH---HHHHH--HHcCCCEEEE
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPS--------HAID---ITREA--IKEGADAVIA 111 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~--------~a~~---~~~~~--~~~~~d~ivv 111 (251)
.++++.||.||.. ..+.+...++...|+.. .++++.+....... +... ...++ ...++|.||+
T Consensus 193 ~p~~VgIV~n~~k--~~a~el~~~I~~~L~~~--~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIs 268 (508)
T PLN02935 193 DPQTVLIITKPNS--TSVRVLCAEMVRWLREQ--KGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVIT 268 (508)
T ss_pred CCCEEEEEecCCC--HHHHHHHHHHHHHHHhc--CCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEEE
Confidence 4889999999964 34455566666666532 12333321110000 0000 00111 1236899999
Q ss_pred EeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhhcCCCCCHHHHHHHHHcCce
Q 025520 112 VGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVR 178 (251)
Q Consensus 112 ~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~al~~i~~g~~ 178 (251)
+|||||+-.++..+. ...+||--|.+|+ -.|-..+.. .+..++++.|++|..
T Consensus 269 iGGDGTlL~Aar~~~-------------~~~iPILGIN~G~-LGFLt~i~~-~e~~~~Le~il~G~y 320 (508)
T PLN02935 269 LGGDGTVLWAASMFK-------------GPVPPVVPFSMGS-LGFMTPFHS-EQYRDCLDAILKGPI 320 (508)
T ss_pred ECCcHHHHHHHHHhc-------------cCCCcEEEEeCCC-cceecccCH-HHHHHHHHHHHcCCc
Confidence 999999999999774 2357777788887 555555433 367889999999864
No 36
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.76 E-value=0.00026 Score=68.83 Aligned_cols=115 Identities=17% Similarity=0.185 Sum_probs=71.2
Q ss_pred CCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHH-HHH---H-HHHcCCCEEEEEeCCch
Q 025520 43 SSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAID-ITR---E-AIKEGADAVIAVGGDGT 117 (251)
Q Consensus 43 ~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~-~~~---~-~~~~~~d~ivv~GGDGT 117 (251)
..+++++.|+.|+.. -.+.+..+++...|++. ++++.+... ....... ... . ...++.|.+|++|||||
T Consensus 287 ~~~~~~i~iv~~~~~--~~~~~~~~~i~~~l~~~---~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDGT 360 (569)
T PRK14076 287 RIKPTKFGIVSRIDN--EEAINLALKIIKYLDSK---GIPYELESF-LYNKLKNRLNEECNLIDDIEEISHIISIGGDGT 360 (569)
T ss_pred ccCCcEEEEEcCCCC--HHHHHHHHHHHHHHHHC---CCEEEEech-hhhhhcccccccccccccccCCCEEEEECCcHH
Confidence 567788999999863 34455556666666553 333332111 0000000 000 0 00125799999999999
Q ss_pred HHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhhcCCCCCHHHHHHHHHcCce
Q 025520 118 LHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVR 178 (251)
Q Consensus 118 l~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~al~~i~~g~~ 178 (251)
+-.++..+. ...+||--|.+|+ -.|-.++.. .+..++++.+++|..
T Consensus 361 ~L~aa~~~~-------------~~~~PilGin~G~-lGFL~~~~~-~~~~~~l~~~~~g~~ 406 (569)
T PRK14076 361 VLRASKLVN-------------GEEIPIICINMGT-VGFLTEFSK-EEIFKAIDSIISGEY 406 (569)
T ss_pred HHHHHHHhc-------------CCCCCEEEEcCCC-CCcCcccCH-HHHHHHHHHHHcCCc
Confidence 999999774 2467888899998 344434443 367889999999864
No 37
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.76 E-value=0.0002 Score=63.03 Aligned_cols=119 Identities=21% Similarity=0.223 Sum_probs=73.2
Q ss_pred eEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHh
Q 025520 48 DLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFS 127 (251)
Q Consensus 48 ~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~ 127 (251)
++.|+.|++ .++.+..+++...|+.. ++++ . .+++|.++++|||||+-.++..+..
T Consensus 2 ~i~Ii~~~~---~~~~~~~~~l~~~l~~~---g~~~---~---------------~~~~Dlvi~iGGDGT~L~a~~~~~~ 57 (265)
T PRK04885 2 KVAIISNGD---PKSKRVASKLKKYLKDF---GFIL---D---------------EKNPDIVISVGGDGTLLSAFHRYEN 57 (265)
T ss_pred EEEEEeCCC---HHHHHHHHHHHHHHHHc---CCcc---C---------------CcCCCEEEEECCcHHHHHHHHHhcc
Confidence 478888842 34555566666666543 2221 0 1358999999999999999998742
Q ss_pred CCcccccccccccCCceEEEecCCChhHHhhhcCCCCCHHHHHHHHHcCcee--eeeEEEEE--cCCCC--ceEEEEEec
Q 025520 128 AGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRS--WVDVGVIN--GETGE--PHYFINVAD 201 (251)
Q Consensus 128 ~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~al~~i~~g~~~--~iDvg~v~--~~~~~--~~~f~n~~~ 201 (251)
. ...+|+--+.+|+ -.|-.++.. .+..++++.+.+|... +..+.++. ..++. ..+.+|-+.
T Consensus 58 ~-----------~~~iPilGIN~G~-lGFL~~~~~-~~~~~~l~~i~~g~y~i~~r~~L~~~v~~~~~~~~~~~alNev~ 124 (265)
T PRK04885 58 Q-----------LDKVRFVGVHTGH-LGFYTDWRP-FEVDKLVIALAKDPGQVVSYPLLEVKITYEDGEKEKYLALNEAT 124 (265)
T ss_pred c-----------CCCCeEEEEeCCC-ceecccCCH-HHHHHHHHHHHcCCceEEEEeeEEEEEEeCCCcEeeeeeeeeee
Confidence 1 1467888899998 444445543 3678899999998642 22233332 11111 235677665
Q ss_pred cc
Q 025520 202 LH 203 (251)
Q Consensus 202 iG 203 (251)
+.
T Consensus 125 i~ 126 (265)
T PRK04885 125 IK 126 (265)
T ss_pred ec
Confidence 54
No 38
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.73 E-value=0.00048 Score=60.42 Aligned_cols=84 Identities=18% Similarity=0.249 Sum_probs=54.5
Q ss_pred cCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhhcCCCCCHHH-HHHHHHcCceeeee
Q 025520 104 EGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYE-AVERIAKGVRSWVD 182 (251)
Q Consensus 104 ~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~-al~~i~~g~~~~iD 182 (251)
+.+|.++++|||||+-.++..+. ...+|+--|.+|+ -.|-.++.. .+..+ .++.+.+.......
T Consensus 32 ~~~D~vi~iGGDGT~L~a~~~~~-------------~~~iPilGIN~G~-lGFL~~~~~-~~~~~~~~~~l~~~~~~~r~ 96 (259)
T PRK00561 32 DGADYLFVLGGDGFFVSTAANYN-------------CAGCKVVGINTGH-LGFYTSFNE-TDLDQNFANKLDQLKFTQID 96 (259)
T ss_pred CCCCEEEEECCcHHHHHHHHHhc-------------CCCCcEEEEecCC-CccccccCH-HHHHHHHHHHHhhCCeEEEE
Confidence 45899999999999999998764 2467888899997 344444433 24555 56666655555555
Q ss_pred EEEEEcCCCCceEEEEEeccc
Q 025520 183 VGVINGETGEPHYFINVADLH 203 (251)
Q Consensus 183 vg~v~~~~~~~~~f~n~~~iG 203 (251)
+.++... ++..+.+|-+.+-
T Consensus 97 ~L~~~~~-~~~~~AlNE~vi~ 116 (259)
T PRK00561 97 LLEVQID-DQIHLVLNELAVY 116 (259)
T ss_pred EEEEEEC-CCeeEEEEEEEEc
Confidence 5555432 2235677766553
No 39
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.53 E-value=0.00079 Score=59.50 Aligned_cols=105 Identities=21% Similarity=0.299 Sum_probs=60.7
Q ss_pred eEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHH-HHHHHcCCCEEEEEeCCchHHHHHHHHH
Q 025520 48 DLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDIT-REAIKEGADAVIAVGGDGTLHEVVNGFF 126 (251)
Q Consensus 48 ~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~-~~~~~~~~d~ivv~GGDGTl~~vln~l~ 126 (251)
++.|+.|+.. ..+.+..+++...|+ . +.++.. ........... .+....+.|.++++|||||+-.++..+
T Consensus 2 ~i~iv~~~~~--~~~~~~~~~i~~~l~-~---g~~~~~--~~~~~~~~~~~~~~~~~~~~D~vi~lGGDGT~L~a~~~~- 72 (271)
T PRK01185 2 KVAFVIRKDC--KRCIKIAKSIIELLP-P---DWEIIY--EMEAAKALGMDGLDIEEINADVIITIGGDGTILRTLQRA- 72 (271)
T ss_pred EEEEEecCCC--HHHHHHHHHHHHHHh-c---CCEEEE--echhhhhcCcccCcccccCCCEEEEEcCcHHHHHHHHHc-
Confidence 5889999853 344555566665552 2 333322 11110000000 000112589999999999998888754
Q ss_pred hCCcccccccccccCCceEEEecCCChhHHhhhcCCCCCHHHHHHHHHcCce
Q 025520 127 SAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVR 178 (251)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~al~~i~~g~~ 178 (251)
..||--+..|+- .|-.++.. .+..++++.+++|..
T Consensus 73 ---------------~~PilGIN~G~l-GFL~~~~~-~~~~~~l~~i~~g~~ 107 (271)
T PRK01185 73 ---------------KGPILGINMGGL-GFLTEIEI-DEVGSAIKKLIRGEY 107 (271)
T ss_pred ---------------CCCEEEEECCCC-ccCcccCH-HHHHHHHHHHHcCCc
Confidence 135555788883 44444433 367888999999864
No 40
>smart00045 DAGKa Diacylglycerol kinase accessory domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain might either be an accessory domain or else contribute to the catalytic domain. Bacterial homologues are known.
Probab=97.52 E-value=2.4e-05 Score=63.65 Aligned_cols=54 Identities=7% Similarity=0.038 Sum_probs=42.6
Q ss_pred EEEEecccchhhhccccc--c--------ccccCchhHHHHHHHHHHh--CC--CccEEEEECCEEEE
Q 025520 196 FINVADLHLSAKAGYYAS--R--------YKRFGNLCYVIGALQAFMG--HR--NQDLRVKVSSCLYI 249 (251)
Q Consensus 196 f~n~~~iG~~a~v~~~~~--~--------~~~~G~l~Y~~~~~~~~~~--~~--~~~~~i~~dg~~~~ 249 (251)
|+|++|+||||.+.+..+ + ++.+|+++|.+.++++++. ++ +++++|++||+.+.
T Consensus 2 ~~N~~giGfDA~V~~~~~~~r~~~~~~~~~~~~g~l~Y~~~~l~~l~~~~~~~~~~~~~i~~dg~~~~ 69 (160)
T smart00045 2 MNNYFSIGVDAHIALEFHNKREANPEKFNSRLKNKMWYFELGTKDLFFRTCKDLHERIELECDGVDVD 69 (160)
T ss_pred ccccccccHhHHHHHHHHHHhhcCchhhcccceeeeeeeecchHHhhhccccchhhceEEEECCEecc
Confidence 889999999999986542 2 2346999999999999975 33 35799999998753
No 41
>PLN02727 NAD kinase
Probab=97.51 E-value=0.00055 Score=68.74 Aligned_cols=112 Identities=18% Similarity=0.263 Sum_probs=68.7
Q ss_pred CCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHH-H-------------HHHHHHHcCCCE
Q 025520 43 SSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAI-D-------------ITREAIKEGADA 108 (251)
Q Consensus 43 ~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~-~-------------~~~~~~~~~~d~ 108 (251)
..++++|+||.++.. .......++...|... .++++. ......+.. . -..+ ..+..|.
T Consensus 675 ~~p~rtVgIV~K~~~---ea~~~~~eL~~~L~~~--~gi~V~--VE~~~a~~l~~~~~~~~~~~~~~~~~~e-l~~~~DL 746 (986)
T PLN02727 675 KSTPKTVLLLKKLGQ---ELMEEAKEVASFLYHQ--EKMNVL--VEPDVHDIFARIPGFGFVQTFYSQDTSD-LHERVDF 746 (986)
T ss_pred CCCCCEEEEEcCCcH---HHHHHHHHHHHHHHhC--CCeEEE--EecchHHHhhccccccccceecccchhh-cccCCCE
Confidence 457899999999974 3445555566666553 123332 221111110 0 0011 1236899
Q ss_pred EEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhhcCCCCCHHHHHHHHHcCc
Q 025520 109 VIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGV 177 (251)
Q Consensus 109 ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~al~~i~~g~ 177 (251)
||++|||||+-.++..+. ...+||.-|.+|+ =.|-.++.. .+..+.++.+++|.
T Consensus 747 VIvLGGDGTlLrAar~~~-------------~~~iPILGINlGr-LGFLTdi~~-ee~~~~L~~Il~G~ 800 (986)
T PLN02727 747 VACLGGDGVILHASNLFR-------------GAVPPVVSFNLGS-LGFLTSHYF-EDFRQDLRQVIHGN 800 (986)
T ss_pred EEEECCcHHHHHHHHHhc-------------CCCCCEEEEeCCC-ccccccCCH-HHHHHHHHHHHcCC
Confidence 999999999999999874 2457888899997 333333332 24567888888876
No 42
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=97.36 E-value=0.0016 Score=56.77 Aligned_cols=60 Identities=18% Similarity=0.318 Sum_probs=39.8
Q ss_pred CCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhhcCCCCCHHHHHHHHHcCce
Q 025520 105 GADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVR 178 (251)
Q Consensus 105 ~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~al~~i~~g~~ 178 (251)
++|.++++|||||+-.++..+.. ..+|+--|.+|+---++..... .+..++++.+..+..
T Consensus 25 ~~Dlvi~iGGDGTlL~a~~~~~~-------------~~~PvlGIN~G~lGFL~~~~~~-~e~~~~l~~~~~~~~ 84 (246)
T PRK04761 25 EADVIVALGGDGFMLQTLHRYMN-------------SGKPVYGMNRGSVGFLMNEYSE-DDLLERIAAAEPTVL 84 (246)
T ss_pred cCCEEEEECCCHHHHHHHHHhcC-------------CCCeEEEEeCCCCCcccCCCCH-HHHHHHHHHhhcCcE
Confidence 47999999999999999998752 3578777888874322221221 234555666665543
No 43
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.36 E-value=0.0033 Score=55.15 Aligned_cols=118 Identities=22% Similarity=0.168 Sum_probs=67.3
Q ss_pred eEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHh
Q 025520 48 DLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFS 127 (251)
Q Consensus 48 ~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~ 127 (251)
++.|+.+|. +.+.++++...|.+.. .++. ...... ....+.|.++++|||||+-.++..+
T Consensus 2 ~~~~~~~~~-----~~~~~~~~~~~l~~~~---~~~~--~~~~~~--------~~~~~~d~vi~iGGDGT~L~a~~~~-- 61 (256)
T PRK14075 2 KLGIFYREE-----KEKEAKFLKEKISKEH---EVVE--FCEASA--------SGKVTADLIIVVGGDGTVLKAAKKV-- 61 (256)
T ss_pred EEEEEeCcc-----HHHHHHHHHHHHHHcC---CeeE--eecccc--------cccCCCCEEEEECCcHHHHHHHHHc--
Confidence 566776665 3466666666666532 2221 111111 1124679999999999999888855
Q ss_pred CCcccccccccccCCceEEEecCCChhHHhhhcCCCCCHHHHHHHHHcCcee--eeeEEEEEcCCCCceEEEEEecc
Q 025520 128 AGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRS--WVDVGVINGETGEPHYFINVADL 202 (251)
Q Consensus 128 ~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~al~~i~~g~~~--~iDvg~v~~~~~~~~~f~n~~~i 202 (251)
.+|+--|..|+- .|-..+.. .+..++++.+.+|... +.-...+....+ ..+.+|-+.+
T Consensus 62 --------------~~Pilgin~G~l-Gfl~~~~~-~~~~~~l~~~~~g~~~~~~r~~l~~~~~~~-~~~alNev~i 121 (256)
T PRK14075 62 --------------GTPLVGFKAGRL-GFLSSYTL-EEIDRFLEDLKNWNFREEKRWFLKIESELG-NHLALNDVTL 121 (256)
T ss_pred --------------CCCEEEEeCCCC-ccccccCH-HHHHHHHHHHHcCCcEEEEeeEEEEEEcCC-cEEEEEEEEE
Confidence 367666788872 33323322 3567889999998643 333333332111 2456665544
No 44
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=97.11 E-value=0.0039 Score=55.43 Aligned_cols=61 Identities=26% Similarity=0.373 Sum_probs=48.1
Q ss_pred cCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhhcCCCCCHHHHHHHHHcCcee
Q 025520 104 EGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRS 179 (251)
Q Consensus 104 ~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~al~~i~~g~~~ 179 (251)
+.+|.+++.|||||+..+++.+.+ ..+|+--+-.|+ =.|-..+. +.+.+++++.+.++..+
T Consensus 54 ~~~d~ivvlGGDGtlL~~~~~~~~-------------~~~pilgin~G~-lGFLt~~~-~~~~~~~~~~~~~~~~~ 114 (281)
T COG0061 54 EKADLIVVLGGDGTLLRAARLLAR-------------LDIPVLGINLGH-LGFLTDFE-PDELEKALDALLEGEYR 114 (281)
T ss_pred cCceEEEEeCCcHHHHHHHHHhcc-------------CCCCEEEEeCCC-cccccccC-HHHHHHHHHHHhcCceE
Confidence 578999999999999999998853 347888888885 56666665 45678889999887554
No 45
>PF00609 DAGK_acc: Diacylglycerol kinase accessory domain; InterPro: IPR000756 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The DAG kinase domain is assumed to be an accessory domain. Upon cell stimulation, DAG kinase converts DAG into phosphatidate, initiating the resynthesis of phosphatidylinositols and attenuating protein kinase C activity. It catalyses the reaction: ATP + 1,2-diacylglycerol = ADP + 1,2-diacylglycerol 3-phosphate. The enzyme is stimulated by calcium and phosphatidylserine and phosphorylated by protein kinase C. This domain is always associated with IPR001206 from INTERPRO.; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway
Probab=96.74 E-value=0.0012 Score=53.74 Aligned_cols=56 Identities=11% Similarity=0.127 Sum_probs=43.6
Q ss_pred EEEEEecccchhhhccccccc----------cccCchhHHHHHHHHHHhCC----CccEEEEECCEEEEE
Q 025520 195 YFINVADLHLSAKAGYYASRY----------KRFGNLCYVIGALQAFMGHR----NQDLRVKVSSCLYIF 250 (251)
Q Consensus 195 ~f~n~~~iG~~a~v~~~~~~~----------~~~G~l~Y~~~~~~~~~~~~----~~~~~i~~dg~~~~~ 250 (251)
.|.|++|||+||++++..++. +..+++.|...+++.++... +..+++.+||+.+..
T Consensus 1 v~~NYfsiG~DA~ia~~Fh~~R~~~P~~f~sr~~NK~~Y~~~g~k~~~~~~~~~~~~~i~l~~dg~~~~l 70 (161)
T PF00609_consen 1 VMNNYFSIGVDAQIALGFHHSREKNPEKFNSRLLNKLWYAFFGFKALFQRSCKNLPKKIELEVDGKEVDL 70 (161)
T ss_pred CeEecccccHhhHHHHHHhhccccChhhhccHHHHHHHHHHHHHHHHHhchhcCchhhcccccCCeeEee
Confidence 388999999999998876533 23588999999999988322 356889999988753
No 46
>PLN02929 NADH kinase
Probab=96.71 E-value=0.0046 Score=55.39 Aligned_cols=61 Identities=26% Similarity=0.362 Sum_probs=43.1
Q ss_pred cCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCC---------hhHHh--hhcCC-----CCCHH
Q 025520 104 EGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGT---------GSDFA--RTFGW-----RNDPY 167 (251)
Q Consensus 104 ~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GT---------gN~fa--~~lg~-----~~~~~ 167 (251)
.+.|.||++|||||+-.++..+ . ..+||--|..|+ .|.|- +++|. +.+..
T Consensus 63 ~~~Dlvi~lGGDGT~L~aa~~~-~-------------~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~~~~~~ 128 (301)
T PLN02929 63 RDVDLVVAVGGDGTLLQASHFL-D-------------DSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAATAEDFE 128 (301)
T ss_pred CCCCEEEEECCcHHHHHHHHHc-C-------------CCCcEEEEECCCcccccccccccccccccCccccccCCHHHHH
Confidence 4689999999999999998876 3 246766677774 13332 23443 23567
Q ss_pred HHHHHHHcCce
Q 025520 168 EAVERIAKGVR 178 (251)
Q Consensus 168 ~al~~i~~g~~ 178 (251)
++++.+++|..
T Consensus 129 ~~L~~il~g~~ 139 (301)
T PLN02929 129 QVLDDVLFGRL 139 (301)
T ss_pred HHHHHHHcCCc
Confidence 88999999864
No 47
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.60 E-value=0.006 Score=53.98 Aligned_cols=59 Identities=24% Similarity=0.316 Sum_probs=40.8
Q ss_pred cCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhhcCCCCCHHHHHHHHHc-Cc
Q 025520 104 EGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAK-GV 177 (251)
Q Consensus 104 ~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~al~~i~~-g~ 177 (251)
+++|.++++|||||+-.++..+.. ..+|+--|.+|+- .|-..+. +.+..+.++.+++ |.
T Consensus 41 ~~~d~vi~iGGDGT~L~aa~~~~~-------------~~~PilgIn~G~l-GFL~~~~-~~~~~~~l~~~~~~g~ 100 (272)
T PRK02231 41 QRAQLAIVIGGDGNMLGRARVLAK-------------YDIPLIGINRGNL-GFLTDID-PKNAYEQLEACLERGE 100 (272)
T ss_pred cCCCEEEEECCcHHHHHHHHHhcc-------------CCCcEEEEeCCCC-cccccCC-HHHHHHHHHHHHhcCC
Confidence 368999999999999999997742 3567666798883 3332332 2245567777777 64
No 48
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=94.64 E-value=0.24 Score=45.66 Aligned_cols=59 Identities=25% Similarity=0.402 Sum_probs=44.5
Q ss_pred cCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhhcCCCCCHHHHHHHHHcCc
Q 025520 104 EGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGV 177 (251)
Q Consensus 104 ~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~al~~i~~g~ 177 (251)
..+|.||++||||||--+.+-. . ..-||+--+-+|| =.|-..+.+. +..+.+..+++++
T Consensus 167 ~~~D~iItLGGDGTvL~aS~LF-q------------~~VPPV~sFslGs-lGFLtpf~f~-~f~~~l~~v~~~~ 225 (409)
T KOG2178|consen 167 NRFDLIITLGGDGTVLYASSLF-Q------------RSVPPVLSFSLGS-LGFLTPFPFA-NFQEQLARVLNGR 225 (409)
T ss_pred cceeEEEEecCCccEEEehhhh-c------------CCCCCeEEeecCC-ccccccccHH-HHHHHHHHHhcCc
Confidence 3679999999999999888744 2 2358899999996 4555544443 5678888999887
No 49
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=93.51 E-value=0.56 Score=42.60 Aligned_cols=87 Identities=21% Similarity=0.214 Sum_probs=56.7
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFF 126 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~ 126 (251)
++++|+..+...+ ..++++...|+... .+.+.+....+.+...++++.+...+.|.||.+|| |++.++...+.
T Consensus 26 ~~~liv~d~~~~~----~~~~~v~~~l~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~d~iIaiGG-Gs~~D~aK~~a 98 (339)
T cd08173 26 GRVLVVTGPTTKS----IAGKKVEALLEDEG--EVDVVIVEDATYEEVEKVESSARDIGADFVIGVGG-GRVIDVAKVAA 98 (339)
T ss_pred CeEEEEECCchHH----HHHHHHHHHHHhcC--CeEEEEeCCCCHHHHHHHHHHhhhcCCCEEEEeCC-chHHHHHHHHH
Confidence 6889998876522 34556666776542 22222222223445556666666678999999998 89999998875
Q ss_pred hCCcccccccccccCCceEEEecCCC
Q 025520 127 SAGKLVTNHNRESAHSTALGLIPLGT 152 (251)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~lgilP~GT 152 (251)
- ...+|+..+|.=.
T Consensus 99 ~------------~~~~p~i~iPTT~ 112 (339)
T cd08173 99 Y------------KLGIPFISVPTAA 112 (339)
T ss_pred H------------hcCCCEEEecCcc
Confidence 2 2357888888643
No 50
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=93.32 E-value=0.83 Score=42.29 Aligned_cols=107 Identities=20% Similarity=0.241 Sum_probs=61.2
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecC----CccHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTS----GPSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~----~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
.++++|+..+.+.+ ....++++...|+.. ++++.++... +.+...+.++.+...++|.||.+|| |++.++
T Consensus 26 ~kr~livtd~~~~~--~~g~~~~v~~~L~~~---gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~ 99 (383)
T cd08186 26 ISKVLLVTGKSAYK--KSGAWDKVEPALDEH---GIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGG-GSPIDS 99 (383)
T ss_pred CCEEEEEcCccHHh--hcChHHHHHHHHHHc---CCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC-ccHHHH
Confidence 47899998876532 123456667777653 2344443211 2234556666666778999999999 777777
Q ss_pred HHHHHh---CCcc-cc---cccccccCCceEEEecC--CChhHHhh
Q 025520 122 VNGFFS---AGKL-VT---NHNRESAHSTALGLIPL--GTGSDFAR 158 (251)
Q Consensus 122 ln~l~~---~~~~-~~---~~~~~~~~~~~lgilP~--GTgN~fa~ 158 (251)
...+.. .... .. .........+|+..||. |||....+
T Consensus 100 aK~ia~~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTGSE~t~ 145 (383)
T cd08186 100 AKSAAILLEHPGKTARDLYEFKFTPEKALPLIAINLTHGTGTEVDR 145 (383)
T ss_pred HHHHHHHHhCCCCcHHHHhCCCcccCCCCCEEEEeCCChhhhhhCC
Confidence 766532 1100 00 00001123578999997 78765443
No 51
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=92.78 E-value=0.98 Score=40.70 Aligned_cols=89 Identities=17% Similarity=0.184 Sum_probs=55.5
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEec--CCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLT--SGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVN 123 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t--~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln 123 (251)
.++++|+..+...+ ..++++...|+.. ..+.+..... .+.++..++++.+.+.++|.||.+|| |++.++..
T Consensus 23 ~~~~liv~~~~~~~----~~~~~v~~~l~~~--~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-Gs~~D~aK 95 (332)
T cd07766 23 FDRALVVSDEGVVK----GVGEKVADSLKKL--IAVHIFDGVGPNPTFEEVKEAVERARAAEVDAVIAVGG-GSTLDTAK 95 (332)
T ss_pred CCeEEEEeCCchhh----hHHHHHHHHHHhc--CcEEEeCCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCC-chHHHHHH
Confidence 36899998766533 3445566666653 1222221111 23345556666666678999999987 89999988
Q ss_pred HHHhCCcccccccccccCCceEEEecCC
Q 025520 124 GFFSAGKLVTNHNRESAHSTALGLIPLG 151 (251)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~~~~lgilP~G 151 (251)
.+.... ...+|+..||.=
T Consensus 96 ~ia~~~----------~~~~p~i~iPTt 113 (332)
T cd07766 96 AVAALL----------NRGLPIIIVPTT 113 (332)
T ss_pred HHHHHh----------cCCCCEEEEeCC
Confidence 775321 236889999963
No 52
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=92.53 E-value=1.3 Score=40.16 Aligned_cols=86 Identities=19% Similarity=0.190 Sum_probs=53.7
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHc-CCCEEEEEeCCchHHHHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKE-GADAVIAVGGDGTLHEVVNG 124 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~-~~d~ivv~GGDGTl~~vln~ 124 (251)
.++++||..+.. ++++...|+.... ..+..+...+.....++.+.+... +.|.||.+|| |++.++...
T Consensus 25 ~~r~livtd~~~--------~~~~~~~L~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~d~iIaiGG-Gsv~D~aK~ 93 (331)
T cd08174 25 FGRVAVVSGPGV--------GEQVAESLKTSFS--AEVEAVEEVSNSDAEEIGARARSIPNVDAVVGIGG-GKVIDVAKY 93 (331)
T ss_pred CCceEEEECCcH--------HHHHHHHHHhccC--ceEEEecCCCccCHHHHHHHHHhccCCCEEEEeCC-cHHHHHHHH
Confidence 378999998764 4456666665321 133333322334445555554443 5899999988 899999988
Q ss_pred HHhCCcccccccccccCCceEEEecCCChh
Q 025520 125 FFSAGKLVTNHNRESAHSTALGLIPLGTGS 154 (251)
Q Consensus 125 l~~~~~~~~~~~~~~~~~~~lgilP~GTgN 154 (251)
+.. ...+|+..+|.=.++
T Consensus 94 vA~------------~~~~p~i~vPTt~~t 111 (331)
T cd08174 94 AAF------------LRGIPLSVPTTNLND 111 (331)
T ss_pred HHh------------hcCCCEEEecCcccc
Confidence 853 235788888864333
No 53
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=92.21 E-value=1.3 Score=40.55 Aligned_cols=86 Identities=15% Similarity=0.132 Sum_probs=53.6
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFF 126 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~ 126 (251)
++++||.++...+ ...+++...|.... .+.+.+....+.+...++++.+...+.|.||.+|| |++.++...+.
T Consensus 35 ~~~livtd~~~~~----~~~~~l~~~l~~~~--~~~~~~~~~~t~~~v~~~~~~~~~~~~d~IIaiGG-Gsv~D~ak~vA 107 (350)
T PRK00843 35 GRALIVTGPTTKK----IAGDRVEENLEDAG--DVEVVIVDEATMEEVEKVEEKAKDVNAGFLIGVGG-GKVIDVAKLAA 107 (350)
T ss_pred CeEEEEECCcHHH----HHHHHHHHHHHhcC--CeeEEeCCCCCHHHHHHHHHHhhccCCCEEEEeCC-chHHHHHHHHH
Confidence 6899999887532 22344555665532 22222222233345556666666668899999998 89999988775
Q ss_pred hCCcccccccccccCCceEEEecCC
Q 025520 127 SAGKLVTNHNRESAHSTALGLIPLG 151 (251)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~lgilP~G 151 (251)
- ...+|+..||.=
T Consensus 108 ~------------~rgip~I~IPTT 120 (350)
T PRK00843 108 Y------------RLGIPFISVPTA 120 (350)
T ss_pred H------------hcCCCEEEeCCC
Confidence 2 235678888853
No 54
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=92.17 E-value=1.2 Score=41.09 Aligned_cols=104 Identities=14% Similarity=0.218 Sum_probs=58.2
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEe---cCC-ccHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL---TSG-PSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~---t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
.++++|+.-+.+... ...+++++..|+.. ++++.++. .+. .+...+.++.+...++|.||.+|| |++.++
T Consensus 28 ~~r~livt~~~~~~~--~~~~~~v~~~L~~~---g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~ 101 (382)
T cd08187 28 GKKVLLVYGGGSIKK--NGLYDRVIASLKEA---GIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVGG-GSVIDS 101 (382)
T ss_pred CCEEEEEeCCcHHHh--cCcHHHHHHHHHHc---CCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC-hHHHHH
Confidence 378888887765321 23455666777653 23443332 111 234445555666678999999998 888888
Q ss_pred HHHHHhC---Cccccc---ccccccCCceEEEecC--CChhH
Q 025520 122 VNGFFSA---GKLVTN---HNRESAHSTALGLIPL--GTGSD 155 (251)
Q Consensus 122 ln~l~~~---~~~~~~---~~~~~~~~~~lgilP~--GTgN~ 155 (251)
...+... ...+.. ........+|+..||. |||-.
T Consensus 102 aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTGsE 143 (382)
T cd08187 102 AKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTLAATGSE 143 (382)
T ss_pred HHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCCCchhhc
Confidence 7765321 000000 0001124578999996 66643
No 55
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=92.15 E-value=1.5 Score=40.50 Aligned_cols=73 Identities=18% Similarity=0.152 Sum_probs=45.6
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEe--cCC--ccHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL--TSG--PSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~--t~~--~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
.++++|+..+..-+ ...++++...|+.. .+++.++. ... .+...+.++.+...++|.||.+|| |++.++
T Consensus 23 ~~r~livt~~~~~~---~g~~~~v~~~L~~~---gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~~D~ 95 (375)
T cd08194 23 GKRPLIVTDKVMVK---LGLVDKLTDSLKKE---GIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALGG-GSPIDT 95 (375)
T ss_pred CCeEEEEcCcchhh---cchHHHHHHHHHHC---CCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHH
Confidence 36899998776532 23456677777653 23443332 112 234455566666678999999998 788887
Q ss_pred HHHH
Q 025520 122 VNGF 125 (251)
Q Consensus 122 ln~l 125 (251)
...+
T Consensus 96 AKai 99 (375)
T cd08194 96 AKAI 99 (375)
T ss_pred HHHH
Confidence 7655
No 56
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=92.04 E-value=1.6 Score=40.30 Aligned_cols=73 Identities=14% Similarity=0.274 Sum_probs=46.3
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEe---cC-CccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL---TS-GPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~---t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
++++||..+.+- +....++++...|+.. ++++.++. .+ +.+...+.++.+.+.++|.||.+|| |++.++.
T Consensus 26 ~r~livt~~~~~--~~~g~~~~v~~~L~~~---~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGG-GS~iD~a 99 (380)
T cd08185 26 KKALIVTGNGSS--KKTGYLDRVIELLKQA---GVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGG-GSSMDTA 99 (380)
T ss_pred CeEEEEeCCCch--hhccHHHHHHHHHHHc---CCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC-ccHHHHH
Confidence 789999987652 1234566677777753 23443332 11 2234555555666678999999998 7777777
Q ss_pred HHH
Q 025520 123 NGF 125 (251)
Q Consensus 123 n~l 125 (251)
..+
T Consensus 100 K~i 102 (380)
T cd08185 100 KAI 102 (380)
T ss_pred HHH
Confidence 665
No 57
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=91.96 E-value=1.3 Score=40.64 Aligned_cols=74 Identities=22% Similarity=0.268 Sum_probs=46.2
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEe--c--CCccHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL--T--SGPSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~--t--~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
.++++|+..+.+.+ ...++++...|+.. +.++.++. . .+.+...++++.+...++|.||.+|| |++.++
T Consensus 23 ~~~~lvv~~~~~~~---~~~~~~v~~~L~~~---~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGG-Gs~~D~ 95 (370)
T cd08551 23 GRKALIVTDPGLVK---TGVLDKVIDSLKEA---GIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGG-GSVLDT 95 (370)
T ss_pred CCeEEEEeCcchhh---CccHHHHHHHHHHc---CCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHH
Confidence 36889998876643 23455566677653 23333332 1 12344556666666678999999998 777777
Q ss_pred HHHHH
Q 025520 122 VNGFF 126 (251)
Q Consensus 122 ln~l~ 126 (251)
...+.
T Consensus 96 AK~va 100 (370)
T cd08551 96 AKAIA 100 (370)
T ss_pred HHHHH
Confidence 76653
No 58
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=91.86 E-value=1.6 Score=39.92 Aligned_cols=106 Identities=18% Similarity=0.195 Sum_probs=60.0
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEe---cC-CccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL---TS-GPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~---t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
++++|+..+.+-+. ...++++...|+.. +.++.++. .+ +.++..+.++.+.+.++|.||.+|| |++.++.
T Consensus 26 ~r~lvVt~~~~~~~--~g~~~~v~~~L~~~---g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GSviD~a 99 (357)
T cd08181 26 KRALIVTGKSSAKK--NGSLDDVTKALEEL---GIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIGIGG-GSPLDAA 99 (357)
T ss_pred CEEEEEeCCchHhh--cCcHHHHHHHHHHc---CCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHH
Confidence 78999988775221 23345566667653 23444332 11 2234556666666778999999998 8888887
Q ss_pred HHHHh---CCccccc--ccccccCCceEEEecC--CChhHHhh
Q 025520 123 NGFFS---AGKLVTN--HNRESAHSTALGLIPL--GTGSDFAR 158 (251)
Q Consensus 123 n~l~~---~~~~~~~--~~~~~~~~~~lgilP~--GTgN~fa~ 158 (251)
..+.. +...... ........+|+..||. |||-....
T Consensus 100 K~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTtagTGsE~t~ 142 (357)
T cd08181 100 KAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTTAGTGSEVTQ 142 (357)
T ss_pred HHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCCCcchhhhCC
Confidence 75431 1000000 0001123578999996 67665554
No 59
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=91.83 E-value=0.14 Score=45.95 Aligned_cols=63 Identities=25% Similarity=0.411 Sum_probs=46.1
Q ss_pred CCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEe--cCCChhHHhhhcCCCCCHHHHHHHHHcCcee
Q 025520 105 GADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLI--PLGTGSDFARTFGWRNDPYEAVERIAKGVRS 179 (251)
Q Consensus 105 ~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgil--P~GTgN~fa~~lg~~~~~~~al~~i~~g~~~ 179 (251)
..|.|+-+|||||+-.+...+... ..+.||+= |.|+.-.+.-.-..+.++.+++..+..|.-+
T Consensus 105 waD~VisvGGDGTfL~Aasrv~~~------------~~PViGvNtDP~~Seg~lcL~~~~~~n~~~al~k~~sgnF~ 169 (395)
T KOG4180|consen 105 WADMVISVGGDGTFLLAASRVIDD------------SKPVIGVNTDPTGSEGHLCLPDKYPSNPAGALCKLTSGNFE 169 (395)
T ss_pred hhhEEEEecCccceeehhhhhhcc------------CCceeeecCCCCcCcceEeccccCCCCcHHHHHHHHhccHH
Confidence 458999999999999999877642 34556653 6777665555555566788999998888653
No 60
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=91.75 E-value=1.4 Score=40.10 Aligned_cols=84 Identities=15% Similarity=0.194 Sum_probs=52.6
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEE---EecCC-ccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICE---SLTSG-PSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~---~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
++++||..+.+- ...++++...|+.. ++++.+ +..+. .+...+.++.+...++|.||.+|| |++.++.
T Consensus 23 ~r~liv~d~~~~----~~~~~~v~~~l~~~---~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGG-Gs~~D~a 94 (345)
T cd08171 23 KKVVVIGGKTAL----AAAKDKIKAALEQS---GIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGG-GKAIDTV 94 (345)
T ss_pred CEEEEEeCHHHH----HHHHHHHHHHHHHC---CCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCC-cHHHHHH
Confidence 788888876542 23456677777653 233322 22222 223344444455668999999998 8999999
Q ss_pred HHHHhCCcccccccccccCCceEEEecC
Q 025520 123 NGFFSAGKLVTNHNRESAHSTALGLIPL 150 (251)
Q Consensus 123 n~l~~~~~~~~~~~~~~~~~~~lgilP~ 150 (251)
..+.. ...+|+..||.
T Consensus 95 K~ia~------------~~~~p~i~VPT 110 (345)
T cd08171 95 KVLAD------------KLGKPVFTFPT 110 (345)
T ss_pred HHHHH------------HcCCCEEEecC
Confidence 88753 12578888886
No 61
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=91.66 E-value=1.2 Score=41.04 Aligned_cols=104 Identities=17% Similarity=0.171 Sum_probs=58.5
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEec---C-CccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLT---S-GPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t---~-~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
++++|+..+..-+ ...++++...|+.. +.++.++.- + +.+...+.++.+...++|.||.+|| |++.++.
T Consensus 29 ~~~lvv~~~~~~~---~~~~~~v~~~L~~~---~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GS~iD~a 101 (377)
T cd08176 29 KKALIVTDKGLVK---IGVVEKVTDVLDEA---GIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISIGG-GSPHDCA 101 (377)
T ss_pred CeEEEECCchHhh---cCcHHHHHHHHHHc---CCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHH
Confidence 6888887765422 23456677777753 234443321 1 1233455555555678999999998 7888877
Q ss_pred HHHHh---CCcccc---cccccccCCceEEEecC--CChhHHh
Q 025520 123 NGFFS---AGKLVT---NHNRESAHSTALGLIPL--GTGSDFA 157 (251)
Q Consensus 123 n~l~~---~~~~~~---~~~~~~~~~~~lgilP~--GTgN~fa 157 (251)
..+.. ....+. .........+|+..||. |||-...
T Consensus 102 K~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagTgSe~t 144 (377)
T cd08176 102 KAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTTAGTASEVT 144 (377)
T ss_pred HHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCCCcchhccC
Confidence 65531 110000 00001234579999997 7775443
No 62
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=91.63 E-value=1 Score=41.07 Aligned_cols=86 Identities=14% Similarity=0.189 Sum_probs=54.3
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecC-CccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTS-GPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l 125 (251)
++++|+..+.+-+ ..++++...|+... ....+.++..+ +.+...+.++.+.+.++|.||.+|| |++.++...+
T Consensus 23 ~~~liv~~~~~~~----~~~~~v~~~l~~~~-i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gs~~D~aK~i 96 (349)
T cd08550 23 SKVAVVGGKTVLK----KSRPRFEAALAKSI-IVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGG-GKTLDTAKAV 96 (349)
T ss_pred CeEEEEEChHHHH----HHHHHHHHHHHhcC-CeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecC-cHHHHHHHHH
Confidence 6788888766532 34566677776531 11223333322 2334455555555678999999998 8999999887
Q ss_pred HhCCcccccccccccCCceEEEecC
Q 025520 126 FSAGKLVTNHNRESAHSTALGLIPL 150 (251)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~lgilP~ 150 (251)
.. ...+|+..||.
T Consensus 97 a~------------~~~~p~i~VPT 109 (349)
T cd08550 97 AD------------RLDKPIVIVPT 109 (349)
T ss_pred HH------------HcCCCEEEeCC
Confidence 53 23578888886
No 63
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=91.58 E-value=0.53 Score=44.73 Aligned_cols=69 Identities=20% Similarity=0.361 Sum_probs=48.6
Q ss_pred cHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHh---hhcCCCCCHHH
Q 025520 92 SHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA---RTFGWRNDPYE 168 (251)
Q Consensus 92 ~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa---~~lg~~~~~~~ 168 (251)
.+..++++.+.+.+.|.++++|||||+..+.. |.+.- .....++++.-||.==-||+. +++|...-...
T Consensus 163 ~~~~~iv~~L~~~~I~~L~vIGGdgT~~~A~~-L~ee~-------~~~g~~I~VIGIPKTIDNDI~~td~S~GFdTAv~~ 234 (459)
T PTZ00286 163 FDPKVMVDTLIRHGINILFTLGGDGTHRGALA-IYKEL-------RRRKLNISVVGIPKTIDNDIPIIDESFGFQTAVEE 234 (459)
T ss_pred hhHHHHHHHHHHcCCCEEEEeCCchHHHHHHH-HHHHH-------HHhCCCceEEEeccccCCCCCCcccCcCchHHHHH
Confidence 46667777788889999999999999986654 22100 012346899999998889987 56676543333
No 64
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=91.26 E-value=2.4 Score=38.99 Aligned_cols=93 Identities=22% Similarity=0.254 Sum_probs=56.1
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEec----CCccHHHHHHHHHHHcCCC---EEEEEeCCchHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLT----SGPSHAIDITREAIKEGAD---AVIAVGGDGTLH 119 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t----~~~~~a~~~~~~~~~~~~d---~ivv~GGDGTl~ 119 (251)
++++|+..+... ...++++...|+... ..+.+.++.. .+.+...++++.+.+.+.| .||++|| |++.
T Consensus 24 ~rvlvVtd~~v~----~~~~~~l~~~L~~~g-~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~dr~~~IIAvGG-Gsv~ 97 (355)
T cd08197 24 DKYLLVTDSNVE----DLYGHRLLEYLREAG-APVELLSVPSGEEHKTLSTLSDLVERALALGATRRSVIVALGG-GVVG 97 (355)
T ss_pred CeEEEEECccHH----HHHHHHHHHHHHhcC-CceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-cHHH
Confidence 788999886531 224455666776542 1222222221 1234566666677677777 8888876 8999
Q ss_pred HHHHHHHhCCcccccccccccCCceEEEecC--CChhH
Q 025520 120 EVVNGFFSAGKLVTNHNRESAHSTALGLIPL--GTGSD 155 (251)
Q Consensus 120 ~vln~l~~~~~~~~~~~~~~~~~~~lgilP~--GTgN~ 155 (251)
++...+.... ...+|+..||. |++.|
T Consensus 98 D~ak~~A~~~----------~rgip~I~IPTTlla~~d 125 (355)
T cd08197 98 NIAGLLAALL----------FRGIRLVHIPTTLLAQSD 125 (355)
T ss_pred HHHHHHHHHh----------ccCCCEEEecCccccccc
Confidence 9888764311 23578889998 45543
No 65
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=90.94 E-value=0.99 Score=41.14 Aligned_cols=90 Identities=16% Similarity=0.161 Sum_probs=54.7
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l 125 (251)
++++|+.-+.+. ...++++...|+... ..+.+..+..+. .++..+.++.+.+.++|.||.+|| |++.++...+
T Consensus 23 ~r~livt~~~~~----~~~~~~v~~~L~~~~-i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GS~iD~aK~i 96 (351)
T cd08170 23 KRALIIADEFVL----DLVGAKIEESLAAAG-IDARFEVFGGECTRAEIERLAEIARDNGADVVIGIGG-GKTLDTAKAV 96 (351)
T ss_pred CeEEEEECHHHH----HHHHHHHHHHHHhCC-CeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEEecC-chhhHHHHHH
Confidence 788888754432 245566677776531 112223233222 234445555555678999999999 8888888877
Q ss_pred HhCCcccccccccccCCceEEEecC--CChh
Q 025520 126 FSAGKLVTNHNRESAHSTALGLIPL--GTGS 154 (251)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~lgilP~--GTgN 154 (251)
.. ...+|+..||. |||-
T Consensus 97 a~------------~~~~P~iaIPTTagTgs 115 (351)
T cd08170 97 AD------------YLGAPVVIVPTIASTDA 115 (351)
T ss_pred HH------------HcCCCEEEeCCccccCc
Confidence 53 13578888886 5553
No 66
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=90.68 E-value=2 Score=39.25 Aligned_cols=88 Identities=20% Similarity=0.151 Sum_probs=52.2
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEec----CCccHHHHHHHHHHHc---CCCEEEEEeCCchH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLT----SGPSHAIDITREAIKE---GADAVIAVGGDGTL 118 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t----~~~~~a~~~~~~~~~~---~~d~ivv~GGDGTl 118 (251)
.++++|+..+... ....+++...|+.. ...++.++.. .+.+...++++.+.+. +.|.||++|| |++
T Consensus 23 ~~k~livtd~~v~----~~~~~~v~~~L~~~--~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~IIaiGG-Gsv 95 (344)
T cd08169 23 FDQYFFISDSGVA----DLIAHYIAEYLSKI--LPVHILVIEGGEEYKTFETVTRILERAIALGANRRTAIVAVGG-GAT 95 (344)
T ss_pred CCeEEEEECccHH----HHHHHHHHHHHHhh--cCceEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-cHH
Confidence 3788888886542 23445566667542 1233433321 1223455555555543 4789998887 888
Q ss_pred HHHHHHHHhCCcccccccccccCCceEEEecC
Q 025520 119 HEVVNGFFSAGKLVTNHNRESAHSTALGLIPL 150 (251)
Q Consensus 119 ~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~ 150 (251)
.++...+.... ...+|+..+|.
T Consensus 96 ~D~ak~vA~~~----------~rgip~i~VPT 117 (344)
T cd08169 96 GDVAGFVASTL----------FRGIAFIRVPT 117 (344)
T ss_pred HHHHHHHHHHh----------ccCCcEEEecC
Confidence 88887764311 23578888886
No 67
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=90.41 E-value=2.2 Score=38.87 Aligned_cols=90 Identities=14% Similarity=0.181 Sum_probs=53.8
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEe----cCCccHHHHHHHHHHHcCC---CEEEEEeCCch
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL----TSGPSHAIDITREAIKEGA---DAVIAVGGDGT 117 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~----t~~~~~a~~~~~~~~~~~~---d~ivv~GGDGT 117 (251)
..++++|+.++...+ ...+++...|+... ..+.+.++. ..+.+...++++.+.+.++ |.||.+|| |+
T Consensus 23 ~~~~~livtd~~~~~----~~~~~l~~~L~~~g-~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIaiGG-Gs 96 (345)
T cd08195 23 KGSKILIVTDENVAP----LYLEKLKAALEAAG-FEVEVIVIPAGEASKSLETLEKLYDALLEAGLDRKSLIIALGG-GV 96 (345)
T ss_pred CCCeEEEEECCchHH----HHHHHHHHHHHhcC-CceEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCCCCeEEEECC-hH
Confidence 347899999876532 34455666676531 112222232 2233455666666666555 88888887 88
Q ss_pred HHHHHHHHHhCCcccccccccccCCceEEEecC
Q 025520 118 LHEVVNGFFSAGKLVTNHNRESAHSTALGLIPL 150 (251)
Q Consensus 118 l~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~ 150 (251)
+.++...+.... ...+|+..+|.
T Consensus 97 v~D~ak~vA~~~----------~rgip~i~VPT 119 (345)
T cd08195 97 VGDLAGFVAATY----------MRGIDFIQIPT 119 (345)
T ss_pred HHhHHHHHHHHH----------hcCCCeEEcch
Confidence 888887664211 23577888885
No 68
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=90.40 E-value=1.1 Score=39.17 Aligned_cols=90 Identities=17% Similarity=0.200 Sum_probs=48.0
Q ss_pred CCCeEEEEEcCCCCCCChhhH-HHHHHHHHHhhcCCCccEEEEe----cCCccHHHHHHHHHHHcCCCEEEEEeCCchHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKE-WKKLLPYLRSRLSVDCNICESL----TSGPSHAIDITREAIKEGADAVIAVGGDGTLH 119 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~-~~~i~~~L~~~~~~~~~~~~~~----t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~ 119 (251)
..++++|+..+.- .+. -++++..|+.. ++++.++. ..+.++..++..++...++|.||.+|| ||++
T Consensus 18 ~~~~~lvv~d~~t-----~~~~g~~v~~~l~~~---g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vGg-G~i~ 88 (250)
T PF13685_consen 18 GLKKVLVVTDENT-----YKAAGEKVEESLKSA---GIEVAVIEEFVGDADEDEVEKLVEALRPKDADLIIGVGG-GTII 88 (250)
T ss_dssp T-SEEEEEEETTH-----HHHHHHHHHHHHHTT---T-EEEEEE-EE---BHHHHHHHHTTS--TT--EEEEEES-HHHH
T ss_pred CCCcEEEEEcCCH-----HHHHHHHHHHHHHHc---CCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEEEEeCC-cHHH
Confidence 3468888887642 222 24556666653 34444322 122223334444443457889999988 9999
Q ss_pred HHHHHHHhCCcccccccccccCCceEEEecCCChhH
Q 025520 120 EVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSD 155 (251)
Q Consensus 120 ~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~ 155 (251)
++..-... ..+.|+..+|.=-.||
T Consensus 89 D~~K~~A~------------~~~~p~isVPTa~S~D 112 (250)
T PF13685_consen 89 DIAKYAAF------------ELGIPFISVPTAASHD 112 (250)
T ss_dssp HHHHHHHH------------HHT--EEEEES--SSG
T ss_pred HHHHHHHH------------hcCCCEEEeccccccc
Confidence 99998764 3478888888654433
No 69
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=90.37 E-value=2.4 Score=39.29 Aligned_cols=107 Identities=17% Similarity=0.148 Sum_probs=58.8
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecC----CccHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTS----GPSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~----~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
.++++|+.-+.. +....++++...|+.. ++++.++... +.++..+.++.+...++|.||.+|| |++-++
T Consensus 31 ~~~~livt~~~~---~~~g~~~~v~~~L~~~---~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiGG-GS~iD~ 103 (383)
T PRK09860 31 FTRTLIVTDNML---TKLGMAGDVQKALEER---NIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGG-GSPHDC 103 (383)
T ss_pred CCEEEEEcCcch---hhCccHHHHHHHHHHc---CCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCC-chHHHH
Confidence 368888876532 1123556677777753 2344333221 2234555556666779999999998 566666
Q ss_pred HHHHHh---CCcccc---cccccccCCceEEEecC--CChhHHhhh
Q 025520 122 VNGFFS---AGKLVT---NHNRESAHSTALGLIPL--GTGSDFART 159 (251)
Q Consensus 122 ln~l~~---~~~~~~---~~~~~~~~~~~lgilP~--GTgN~fa~~ 159 (251)
...+.. +..... .........+|+..||. |||-...+.
T Consensus 104 AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTTagTGSE~t~~ 149 (383)
T PRK09860 104 AKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTAGTASEMTRF 149 (383)
T ss_pred HHHHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCCCcchhccCce
Confidence 655431 110000 00011134578999997 777655443
No 70
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=90.21 E-value=0.93 Score=41.30 Aligned_cols=84 Identities=17% Similarity=0.250 Sum_probs=54.0
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEec-CCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLT-SGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t-~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l 125 (251)
++++||..+.. ....++++...|+.. ...+.++.. .+.++..+.++.+.+.++|.||.+|| |++.++...+
T Consensus 24 ~~~liv~d~~~----~~~~~~~l~~~L~~~---~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~iIavGG-Gs~~D~aK~i 95 (347)
T cd08172 24 KRPLIVTGPRS----WAAAKPYLPESLAAG---EAFVLRYDGECSEENIERLAAQAKENGADVIIGIGG-GKVLDTAKAV 95 (347)
T ss_pred CeEEEEECHHH----HHHHHHHHHHHHhcC---eEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHHHHH
Confidence 78899998765 123445555555321 233333322 33345556666666778999999998 8999999888
Q ss_pred HhCCcccccccccccCCceEEEecC
Q 025520 126 FSAGKLVTNHNRESAHSTALGLIPL 150 (251)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~lgilP~ 150 (251)
.. ...+|+..+|.
T Consensus 96 a~------------~~~~p~i~VPT 108 (347)
T cd08172 96 AD------------RLGVPVITVPT 108 (347)
T ss_pred HH------------HhCCCEEEecC
Confidence 53 12568888885
No 71
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=90.19 E-value=0.59 Score=44.20 Aligned_cols=66 Identities=20% Similarity=0.350 Sum_probs=46.1
Q ss_pred ccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHh---hhcCCCC
Q 025520 91 PSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA---RTFGWRN 164 (251)
Q Consensus 91 ~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa---~~lg~~~ 164 (251)
+.+..++++.+.+.+.|.++++|||||+..+.. |.+.- .....++++.-||.==-||+. +++|...
T Consensus 158 ~~~~~~iv~~L~~~~I~~L~vIGGdgT~~gA~~-l~ee~-------~~~g~~I~VIGIPKTIDNDi~~td~S~GFdT 226 (443)
T PRK06830 158 PQDPEEIVDTLERMNINILFVIGGDGTLRGASA-IAEEI-------ERRGLKISVIGIPKTIDNDINFIQKSFGFET 226 (443)
T ss_pred chhHHHHHHHHHHcCCCEEEEeCCchHHHHHHH-HHHHH-------HHhCCCceEEEeccccCCCCcCcccCCCHHH
Confidence 345666777777889999999999999987654 32100 012346899999988889986 4555543
No 72
>PLN02564 6-phosphofructokinase
Probab=89.72 E-value=0.68 Score=44.21 Aligned_cols=64 Identities=23% Similarity=0.408 Sum_probs=44.8
Q ss_pred cHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHh---hhcCCC
Q 025520 92 SHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA---RTFGWR 163 (251)
Q Consensus 92 ~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa---~~lg~~ 163 (251)
.+..++++.+.+.+.|.|+++|||||+..+.. |.+.- .....++++.-||.==-||+. +++|..
T Consensus 163 ~~~~~iv~~L~~~~Id~LivIGGDGS~~gA~~-L~e~~-------~~~g~~i~VIGIPKTIDNDI~~tD~T~GFd 229 (484)
T PLN02564 163 HDTSKIVDSIQDRGINQVYIIGGDGTQKGASV-IYEEI-------RRRGLKVAVAGIPKTIDNDIPVIDKSFGFD 229 (484)
T ss_pred chHHHHHHHHHHhCCCEEEEECCchHHHHHHH-HHHHH-------HHcCCCceEEEecccccCCCcCcccCCCHH
Confidence 45677778888889999999999999987654 22100 011345678889988889987 345554
No 73
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=89.49 E-value=0.88 Score=40.90 Aligned_cols=54 Identities=15% Similarity=0.279 Sum_probs=41.7
Q ss_pred cHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhh
Q 025520 92 SHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFAR 158 (251)
Q Consensus 92 ~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~ 158 (251)
++.+++++.+.+.+.|.++++|||||+..+.. |.+ ...+++.-+|.=--||+.-
T Consensus 78 ~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~-L~e------------~~~i~vigiPkTIDNDl~~ 131 (301)
T TIGR02482 78 EGRQKAVENLKKLGIEGLVVIGGDGSYTGAQK-LYE------------EGGIPVIGLPGTIDNDIPG 131 (301)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHH-HHH------------hhCCCEEeecccccCCCcC
Confidence 34556777788889999999999999977654 432 1358888899999999873
No 74
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=89.45 E-value=1.3 Score=40.01 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=42.0
Q ss_pred cHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhh
Q 025520 92 SHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFAR 158 (251)
Q Consensus 92 ~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~ 158 (251)
++.++.++.+.+.+.|.++++|||||+..+.. |.+ ..+++.-+|.==-||+.-
T Consensus 79 ~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~-L~e-------------~~i~vigiPkTIDNDi~g 131 (317)
T cd00763 79 EGQAKAIEQLKKHGIDALVVIGGDGSYMGAMR-LTE-------------HGFPCVGLPGTIDNDIPG 131 (317)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCchHHHHHHH-HHH-------------cCCCEEEecccccCCCCC
Confidence 34566677788889999999999999987753 432 258999999988999873
No 75
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=89.36 E-value=0.74 Score=41.81 Aligned_cols=58 Identities=29% Similarity=0.406 Sum_probs=43.6
Q ss_pred cHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhh---hcCCC
Q 025520 92 SHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFAR---TFGWR 163 (251)
Q Consensus 92 ~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~---~lg~~ 163 (251)
++.+++++.+.+.+.|.++++|||||+..+. .|.+ ..+++.-+|.==-||+.- ++|..
T Consensus 81 ~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~-~L~~-------------~gi~vigiPkTIDNDl~gtd~tiGfd 141 (324)
T TIGR02483 81 DGDDKIVANLKELGLDALIAIGGDGTLGIAR-RLAD-------------KGLPVVGVPKTIDNDLEATDYTFGFD 141 (324)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCchHHHHHH-HHHh-------------cCCCEEeeccccCCCCcCCccCcCHH
Confidence 3456777778788999999999999997654 4542 248888899888899973 45544
No 76
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=88.99 E-value=1.5 Score=40.09 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=41.9
Q ss_pred cHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHh
Q 025520 92 SHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA 157 (251)
Q Consensus 92 ~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa 157 (251)
++..++++.+.+.+.|.++++|||||+..+.. |.+.- ......+++.-+|.=--||+.
T Consensus 79 ~~~~~~~~~l~~~~I~~Lv~IGGd~s~~~a~~-L~e~~-------~~~~~~i~vigiPkTIDNDl~ 136 (338)
T cd00363 79 EGRAKAAENLKKHGIDALVVIGGDGSYTGADL-LTEEW-------PSKYQGFNVIGLPGTIDNDIK 136 (338)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHH-HHHHH-------HhcCCCccEEEeeecccCCCc
Confidence 34566777788889999999999999976644 32110 012347899999977789987
No 77
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=88.87 E-value=3.8 Score=37.94 Aligned_cols=73 Identities=19% Similarity=0.204 Sum_probs=45.4
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecC---C-ccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTS---G-PSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~---~-~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
++++|+..+...+ ...++++...|+.. ++++.++... . ..+..+.++.+.+.++|.||.+|| |++.++.
T Consensus 23 ~~~livt~~~~~~---~~~~~~v~~~L~~~---~~~~~~f~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~a 95 (386)
T cd08191 23 SRALIVTDERMAG---TPVFAELVQALAAA---GVEVEVFDGVLPDLPRSELCDAASAAARAGPDVIIGLGG-GSCIDLA 95 (386)
T ss_pred CeEEEEECcchhh---cchHHHHHHHHHHc---CCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHH
Confidence 7889998765432 24556677777653 2444444211 1 223344455555678999999998 7888887
Q ss_pred HHHH
Q 025520 123 NGFF 126 (251)
Q Consensus 123 n~l~ 126 (251)
..+.
T Consensus 96 K~ia 99 (386)
T cd08191 96 KIAG 99 (386)
T ss_pred HHHH
Confidence 7664
No 78
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=88.80 E-value=3 Score=37.73 Aligned_cols=96 Identities=20% Similarity=0.232 Sum_probs=54.7
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEE---ecC-CccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICES---LTS-GPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~---~t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
++++||..+...+ ...++++...|+.. .++.++ ..+ ..+...+.++.+.+.++|.||.+|| |++.++.
T Consensus 23 ~~~lvv~~~~~~~---~g~~~~v~~~l~~~----~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IiaiGG-Gs~~D~a 94 (332)
T cd08180 23 KRVLIVTDPFMVK---SGMLDKVTDHLDSS----IEVEIFSDVVPDPPIEVVAKGIKKFLDFKPDIVIALGG-GSAIDAA 94 (332)
T ss_pred CeEEEEeCchhhh---CccHHHHHHHHHhc----CcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEECC-chHHHHH
Confidence 7899998875422 12455566666643 222222 111 1234445555566678999999999 6777777
Q ss_pred HHHHhCCcccccccccccCCceEEEecC--CChhH
Q 025520 123 NGFFSAGKLVTNHNRESAHSTALGLIPL--GTGSD 155 (251)
Q Consensus 123 n~l~~~~~~~~~~~~~~~~~~~lgilP~--GTgN~ 155 (251)
..+..... .......+|+..+|. |||-.
T Consensus 95 Ka~a~~~~-----~~~~~~~~p~i~VPTtagtgse 124 (332)
T cd08180 95 KAIIYFAK-----KLGKKKKPLFIAIPTTSGTGSE 124 (332)
T ss_pred HHHHHHHh-----CCCCCCCCCEEEeCCCCcchHh
Confidence 75421000 001234579999995 66643
No 79
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=88.63 E-value=5.2 Score=36.73 Aligned_cols=88 Identities=22% Similarity=0.178 Sum_probs=52.7
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEE--EEe----cCCccHHHHHHHHHHHcCC----CEEEEEeC
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNIC--ESL----TSGPSHAIDITREAIKEGA----DAVIAVGG 114 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~--~~~----t~~~~~a~~~~~~~~~~~~----d~ivv~GG 114 (251)
..++++||..+..- ....+++...|+.. +..+. ++. ..+.+...++++.+.+.+. |.||.+||
T Consensus 25 ~~~~~lvVtd~~v~----~~~~~~v~~~l~~~---g~~~~~~v~~~~e~~~s~~~v~~~~~~l~~~~~~r~~d~IVaiGG 97 (354)
T cd08199 25 GSGRRFVVVDQNVD----KLYGKKLREYFAHH---NIPLTILVLRAGEAAKTMDTVLKIVDALDAFGISRRREPVLAIGG 97 (354)
T ss_pred CCCeEEEEECccHH----HHHHHHHHHHHHhc---CCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCEEEEECC
Confidence 46889999987642 12334566667653 23333 222 2233455566666666566 89998887
Q ss_pred CchHHHHHHHHHhCCcccccccccccCCceEEEecC
Q 025520 115 DGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPL 150 (251)
Q Consensus 115 DGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~ 150 (251)
|++.+++..+.... ...+|+..+|.
T Consensus 98 -G~v~D~ak~~A~~~----------~rg~p~i~VPT 122 (354)
T cd08199 98 -GVLTDVAGLAASLY----------RRGTPYVRIPT 122 (354)
T ss_pred -cHHHHHHHHHHHHh----------cCCCCEEEEcC
Confidence 88888888775211 12466666666
No 80
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=88.57 E-value=4.3 Score=36.78 Aligned_cols=83 Identities=12% Similarity=0.103 Sum_probs=51.5
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEe--c-C--CccHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL--T-S--GPSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~--t-~--~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
++++||..+...+ ...+++...|++. ..++.++. . . +.+...++++.+.+ +.|.||.+|| |++.++
T Consensus 25 ~kvlivtd~~~~~----~~~~~i~~~L~~~---~~~~~i~~~~~~~~p~~~~v~~~~~~~~~-~~d~IIaiGG-Gsv~D~ 95 (332)
T cd08549 25 SKIMIVCGNNTYK----VAGKEIIERLESN---NFTKEVLERDSLLIPDEYELGEVLIKLDK-DTEFLLGIGS-GTIIDL 95 (332)
T ss_pred CcEEEEECCcHHH----HHHHHHHHHHHHc---CCeEEEEecCCCCCCCHHHHHHHHHHhhc-CCCEEEEECC-cHHHHH
Confidence 6899998876522 1224566666653 22333222 1 1 22344455555555 8999999998 899999
Q ss_pred HHHHHhCCcccccccccccCCceEEEecC
Q 025520 122 VNGFFSAGKLVTNHNRESAHSTALGLIPL 150 (251)
Q Consensus 122 ln~l~~~~~~~~~~~~~~~~~~~lgilP~ 150 (251)
...+.- ...+|+..+|.
T Consensus 96 aK~iA~------------~~gip~I~VPT 112 (332)
T cd08549 96 VKFVSF------------KVGKPFISVPT 112 (332)
T ss_pred HHHHHH------------HcCCCEEEeCC
Confidence 887752 23578888885
No 81
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=88.24 E-value=5.4 Score=36.54 Aligned_cols=71 Identities=23% Similarity=0.249 Sum_probs=41.8
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEe---cCC-ccHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL---TSG-PSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~---t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
.++++||..+.+- ..+.+...|+.. .+++.++. .+. .+...+.++.+.+.++|.||.+|| |++.++
T Consensus 23 ~~~~livtd~~~~------~~~~~~~~l~~~---~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-Gs~~D~ 92 (367)
T cd08182 23 GKRVLLVTGPRSA------IASGLTDILKPL---GTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVGG-GSVLDT 92 (367)
T ss_pred CCeEEEEeCchHH------HHHHHHHHHHHc---CCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCC-cHHHHH
Confidence 3688888776542 234455566543 23333332 111 133445555555668999999988 788887
Q ss_pred HHHHH
Q 025520 122 VNGFF 126 (251)
Q Consensus 122 ln~l~ 126 (251)
...+.
T Consensus 93 aK~ia 97 (367)
T cd08182 93 AKALA 97 (367)
T ss_pred HHHHH
Confidence 76653
No 82
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=88.17 E-value=5.1 Score=36.38 Aligned_cols=89 Identities=16% Similarity=0.160 Sum_probs=51.8
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEec----CCccHHHHHHHHHHHcCC---CEEEEEeCCchH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLT----SGPSHAIDITREAIKEGA---DAVIAVGGDGTL 118 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t----~~~~~a~~~~~~~~~~~~---d~ivv~GGDGTl 118 (251)
.++++|+.++..- ....+++.+.|+... ..+.+.++.. .+.+...++++.+.+.+. |.||++|| |++
T Consensus 20 ~~~~livtd~~~~----~~~~~~v~~~L~~~g-~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gsv 93 (344)
T TIGR01357 20 PSKLVIITDETVA----DLYADKLLEALQALG-YNVLKLTVPDGEESKSLETVQRLYDQLLEAGLDRSSTIIALGG-GVV 93 (344)
T ss_pred CCeEEEEECCchH----HHHHHHHHHHHHhcC-CceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcC-hHH
Confidence 3789999886542 224555666776532 1122222321 122445555555555444 88998887 888
Q ss_pred HHHHHHHHhCCcccccccccccCCceEEEecC
Q 025520 119 HEVVNGFFSAGKLVTNHNRESAHSTALGLIPL 150 (251)
Q Consensus 119 ~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~ 150 (251)
.++...+.... ...+|+..+|.
T Consensus 94 ~D~aK~iA~~~----------~~~~p~i~VPT 115 (344)
T TIGR01357 94 GDLAGFVAATY----------MRGIRFIQVPT 115 (344)
T ss_pred HHHHHHHHHHH----------ccCCCEEEecC
Confidence 88887764211 23578888886
No 83
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=88.14 E-value=5.3 Score=36.58 Aligned_cols=87 Identities=16% Similarity=0.170 Sum_probs=52.4
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEE--Eec----CCccHHHHHHHHHHHcCC---CEEEEEeCCc
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICE--SLT----SGPSHAIDITREAIKEGA---DAVIAVGGDG 116 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~--~~t----~~~~~a~~~~~~~~~~~~---d~ivv~GGDG 116 (251)
.++++|+..+... ...++++...|+.. ++++.. +.. .+-+...++++.+.+.+. |.||.+|| |
T Consensus 31 ~~~~livtd~~~~----~~~~~~v~~~L~~~---gi~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-G 102 (358)
T PRK00002 31 GKKVAIVTDETVA----PLYLEKLRASLEAA---GFEVDVVVLPDGEQYKSLETLEKIYDALLEAGLDRSDTLIALGG-G 102 (358)
T ss_pred CCeEEEEECCchH----HHHHHHHHHHHHhc---CCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcC-c
Confidence 4788999986652 23455666677653 233322 221 122445555555555444 89999987 8
Q ss_pred hHHHHHHHHHhCCcccccccccccCCceEEEecC
Q 025520 117 TLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPL 150 (251)
Q Consensus 117 Tl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~ 150 (251)
++.+++..+.... ...+|+..+|.
T Consensus 103 sv~D~aK~iA~~~----------~~gip~i~IPT 126 (358)
T PRK00002 103 VIGDLAGFAAATY----------MRGIRFIQVPT 126 (358)
T ss_pred HHHHHHHHHHHHh----------cCCCCEEEcCc
Confidence 8899888774211 23578888886
No 84
>PRK03202 6-phosphofructokinase; Provisional
Probab=87.86 E-value=1.9 Score=39.14 Aligned_cols=52 Identities=23% Similarity=0.328 Sum_probs=42.0
Q ss_pred cHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHh
Q 025520 92 SHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA 157 (251)
Q Consensus 92 ~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa 157 (251)
++...+++.+.+.+.|.++++|||||+..+.. |.+ ..+++.-+|.==-||+.
T Consensus 80 ~~~~~~~~~l~~~~Id~Li~IGGd~s~~~a~~-L~e-------------~~i~vigiPkTIDNDl~ 131 (320)
T PRK03202 80 EGRAKAIENLKKLGIDALVVIGGDGSYMGAKR-LTE-------------HGIPVIGLPGTIDNDIA 131 (320)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCChHHHHHHHH-HHh-------------cCCcEEEecccccCCCC
Confidence 45667777788889999999999999987655 532 36888889998889987
No 85
>PRK14071 6-phosphofructokinase; Provisional
Probab=87.29 E-value=1.4 Score=40.68 Aligned_cols=58 Identities=26% Similarity=0.387 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhh---hcCCC
Q 025520 93 HAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFAR---TFGWR 163 (251)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~---~lg~~ 163 (251)
...++++.+.+.+.|.++++|||||+.- +..|.+ ...+++--||.==-||+.- ++|..
T Consensus 95 ~~~~~~~~l~~~~Id~Li~IGGdgS~~~-a~~L~~------------~~~i~vIgiPkTIDNDl~~td~t~Gf~ 155 (360)
T PRK14071 95 RSQEIIDGYHSLGLDALIGIGGDGSLAI-LRRLAQ------------QGGINLVGIPKTIDNDVGATEVSIGFD 155 (360)
T ss_pred HHHHHHHHHHHcCCCEEEEECChhHHHH-HHHHHH------------hcCCcEEEecccccCCCcCcccCcChh
Confidence 3456667777889999999999999864 455542 1268999999888899863 45554
No 86
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=86.93 E-value=1.4 Score=40.06 Aligned_cols=88 Identities=20% Similarity=0.276 Sum_probs=51.5
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEE-EEecCCc-cHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNIC-ESLTSGP-SHAIDITREAIKEGADAVIAVGGDGTLHEVVNG 124 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~-~~~t~~~-~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~ 124 (251)
++++|+..+..- +..++++...|+.. .+.+. ....... +...+.++.+...++|.||.+|| |++.++...
T Consensus 24 ~~~livt~~~~~----~~~~~~v~~~l~~~---~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-Gs~iD~aK~ 95 (337)
T cd08177 24 SRALVLTTPSLA----TKLAERVASALGDR---VAGTFDGAVMHTPVEVTEAAVAAAREAGADGIVAIGG-GSTIDLAKA 95 (337)
T ss_pred CeEEEEcChHHH----HHHHHHHHHHhccC---CcEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHHHH
Confidence 678888765431 22455566666543 12221 1222222 23344444455678999999998 899999988
Q ss_pred HHhCCcccccccccccCCceEEEecC-CChh
Q 025520 125 FFSAGKLVTNHNRESAHSTALGLIPL-GTGS 154 (251)
Q Consensus 125 l~~~~~~~~~~~~~~~~~~~lgilP~-GTgN 154 (251)
+.. ...+|+..||. -||.
T Consensus 96 ia~------------~~~~p~i~IPTtatgs 114 (337)
T cd08177 96 IAL------------RTGLPIIAIPTTLSGS 114 (337)
T ss_pred HHH------------HhcCCEEEEcCCchhh
Confidence 753 12578888884 2444
No 87
>PRK10586 putative oxidoreductase; Provisional
Probab=86.80 E-value=6.7 Score=36.09 Aligned_cols=88 Identities=16% Similarity=0.182 Sum_probs=51.9
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecC-CccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTS-GPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l 125 (251)
++++||..+++- .+....+...|+.. .+++..+... +..+..++++.. ..++|.||.+|| |++.++...+
T Consensus 35 ~~~lvv~g~~~~----~~~~~~~~~~l~~~---~~~~~~~~g~~~~~~v~~l~~~~-~~~~d~iiavGG-Gs~iD~aK~~ 105 (362)
T PRK10586 35 SRAVWIYGERAI----AAAQPYLPPAFELP---GAKHILFRGHCSESDVAQLAAAS-GDDRQVVIGVGG-GALLDTAKAL 105 (362)
T ss_pred CeEEEEEChHHH----HHHHHHHHHHHHHc---CCeEEEeCCCCCHHHHHHHHHHh-ccCCCEEEEecC-cHHHHHHHHH
Confidence 678888766542 12223344455543 2444334322 233444544433 357899999987 8888888887
Q ss_pred HhCCcccccccccccCCceEEEecCCChhH
Q 025520 126 FSAGKLVTNHNRESAHSTALGLIPLGTGSD 155 (251)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~lgilP~GTgN~ 155 (251)
.. ...+|+..+|.=.+|+
T Consensus 106 a~------------~~~~p~i~vPT~a~t~ 123 (362)
T PRK10586 106 AR------------RLGLPFVAIPTIAATC 123 (362)
T ss_pred Hh------------hcCCCEEEEeCCcccc
Confidence 53 2357999999744443
No 88
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=86.68 E-value=2.4 Score=42.81 Aligned_cols=64 Identities=19% Similarity=0.315 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCchHHHHH----------HHHHhCCcccccccccccCCceEEEecCCChhHHh
Q 025520 93 HAIDITREAIKEGADAVIAVGGDGTLHEVV----------NGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA 157 (251)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl----------n~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa 157 (251)
.-.+.++.+.+.+.|.+|++|||||+.-+. ..|.+.+. +..........+++.-||.==-||+.
T Consensus 85 ~~~~a~~~L~~~~Id~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~-i~~~~~~~~~~l~vVGiPkTIDNDl~ 158 (762)
T cd00764 85 GRLQAAYNLIQRGITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGK-ITEEEVAKYQHLNIVGMVGSIDNDFC 158 (762)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCc-ccHHHHhcCCCceEEEeccceeCCCC
Confidence 445667778888999999999999997764 22332221 11111223446789999988889997
No 89
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=86.65 E-value=3 Score=38.30 Aligned_cols=86 Identities=13% Similarity=0.141 Sum_probs=52.8
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCc-cHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGP-SHAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~-~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l 125 (251)
++++||..+... ...++++...|+... ..+.+..+..+.. ....+.++.+...++|.||.+|| |++.++...+
T Consensus 30 ~~~livtd~~~~----~~~~~~v~~~l~~~~-~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK~i 103 (366)
T PRK09423 30 KRALVIADEFVL----GIVGDRVEASLKEAG-LTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGG-GKTLDTAKAV 103 (366)
T ss_pred CEEEEEEChhHH----HHHHHHHHHHHHhCC-CeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecC-hHHHHHHHHH
Confidence 788888876542 235566666776531 1122222322222 23444455555668999999999 8999998887
Q ss_pred HhCCcccccccccccCCceEEEecC
Q 025520 126 FSAGKLVTNHNRESAHSTALGLIPL 150 (251)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~lgilP~ 150 (251)
.. ...+|+..||.
T Consensus 104 A~------------~~~~p~i~IPT 116 (366)
T PRK09423 104 AD------------YLGVPVVIVPT 116 (366)
T ss_pred HH------------HcCCCEEEeCC
Confidence 53 12578888886
No 90
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=86.29 E-value=2.8 Score=38.45 Aligned_cols=50 Identities=20% Similarity=0.293 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHh
Q 025520 95 IDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA 157 (251)
Q Consensus 95 ~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa 157 (251)
...++.+.+.+.|.+|++|||||..-+.- |.+. -.+++--||.==-||+.
T Consensus 84 ~~~~~~l~~~gId~LvvIGGDgS~~gA~~-Lae~------------~~i~vVGvPkTIDNDi~ 133 (347)
T COG0205 84 KVAAENLKKLGIDALVVIGGDGSYTGAAL-LAEE------------GGIPVVGVPKTIDNDIS 133 (347)
T ss_pred HHHHHHHHHcCCCEEEEECCCChHHHHHH-HHHh------------cCCcEEecCCCccCCCc
Confidence 34556677889999999999999876654 4321 23888889988889998
No 91
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=85.68 E-value=1.1 Score=39.95 Aligned_cols=53 Identities=25% Similarity=0.351 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhh
Q 025520 93 HAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFAR 158 (251)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~ 158 (251)
...++++.+.+.+.|.++++|||||+..+ +.|.+ ...+++..||.=--||+.-
T Consensus 80 ~~~~~~~~l~~~~Id~Li~IGG~gs~~~a-~~L~~------------~~~i~vigiPkTIDNDi~g 132 (282)
T PF00365_consen 80 GRKKIVENLKKLGIDALIVIGGDGSMKGA-HKLSE------------EFGIPVIGIPKTIDNDIPG 132 (282)
T ss_dssp HHHHHHHHHHHTTESEEEEEESHHHHHHH-HHHHH------------HHHSEEEEEEEETTSSCTT
T ss_pred hhhhHHHHHHHhCCCEEEEecCCCHHHHH-HHHHh------------cCceEEEEEeccccCCcCC
Confidence 34456677777899999999999998876 44542 1238999999988899885
No 92
>PF10254 Pacs-1: PACS-1 cytosolic sorting protein; InterPro: IPR019381 PACS-1 is a cytosolic sorting protein that directs the localisation of membrane proteins in the trans-Golgi network (TGN)/endosomal system. PACS-1 connects the clathrin adaptor AP-1 to acidic cluster sorting motifs contained in the cytoplasmic domain of cargo proteins such as furin, the cation-independent mannose-6-phosphate receptor and in viral proteins such as human immunodeficiency virus type 1 Nef [].
Probab=85.62 E-value=5.8 Score=37.18 Aligned_cols=101 Identities=19% Similarity=0.200 Sum_probs=61.1
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHH----HHH--------cCCCEEEEEeC
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITRE----AIK--------EGADAVIAVGG 114 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~----~~~--------~~~d~ivv~GG 114 (251)
..-.+++|+.--.|+. +...|..+ ...++.|.+..|....... +.+ ...-.|+|+||
T Consensus 16 Pe~i~Lvn~sd~qgq~------l~~~l~~~-----~~pvv~t~s~advqa~fs~iv~rIQk~Cn~ns~~p~~vKV~v~G~ 84 (414)
T PF10254_consen 16 PENIILVNTSDWQGQF------LSDLLQEH-----MLPVVCTCSTADVQAAFSAIVSRIQKFCNCNSSPPPPVKVAVAGG 84 (414)
T ss_pred CceEEEEecCccchhH------HHHHHhhc-----CCCeEecCCHHHHHHHHHHHHHHHHHhccCCCCCCCceEEEEEcc
Confidence 3456778876433332 23344432 1223566676666654433 332 12337999999
Q ss_pred CchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhhcCC
Q 025520 115 DGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGW 162 (251)
Q Consensus 115 DGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~ 162 (251)
|--++.||...++.-.. +..+|. .-+.+-+||+|+ |.+|+.||-
T Consensus 85 ~~y~~~VLr~yVE~Ls~-K~~dWl--~~~rFlvIPlGs-~~varyLgs 128 (414)
T PF10254_consen 85 QSYLSAVLRAYVEQLSH-KPPDWL--NYLRFLVIPLGS-HPVARYLGS 128 (414)
T ss_pred HHHHHHHHHHHHHHhcc-CCcccc--cceeEEEecCCC-CHHHHHHhc
Confidence 99999999988753210 111221 246689999999 999998874
No 93
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=85.57 E-value=5.8 Score=36.08 Aligned_cols=85 Identities=15% Similarity=0.176 Sum_probs=51.1
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEE--e-c---CCccHHHHHHHHHHHcCCCEEEEEeCCchHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICES--L-T---SGPSHAIDITREAIKEGADAVIAVGGDGTLH 119 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~--~-t---~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~ 119 (251)
.++++||..+... ....+++...|+.. ++++.++ . . .+.+...++++.+.+ ++|.||.+|| |++.
T Consensus 23 ~~~~livtd~~~~----~~~~~~v~~~l~~~---~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~-~~d~IIaIGG-Gs~~ 93 (348)
T cd08175 23 YKKALIVADENTY----AAAGKKVEALLKRA---GVVVLLIVLPAGDLIADEKAVGRVLKELER-DTDLIIAVGS-GTIN 93 (348)
T ss_pred CCcEEEEECCcHH----HHHHHHHHHHHHHC---CCeeEEeecCCCcccCCHHHHHHHHHHhhc-cCCEEEEECC-cHHH
Confidence 3678888866442 12235566667653 2333222 1 1 122334445555544 8999999999 8999
Q ss_pred HHHHHHHhCCcccccccccccCCceEEEecCC
Q 025520 120 EVVNGFFSAGKLVTNHNRESAHSTALGLIPLG 151 (251)
Q Consensus 120 ~vln~l~~~~~~~~~~~~~~~~~~~lgilP~G 151 (251)
++...+.. ...+|+..||.=
T Consensus 94 D~aK~vA~------------~~~~p~i~IPTT 113 (348)
T cd08175 94 DITKYVSY------------KTGIPYISVPTA 113 (348)
T ss_pred HHHHHHHH------------hcCCCEEEecCc
Confidence 99988853 235788888853
No 94
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=85.35 E-value=2.5 Score=39.53 Aligned_cols=57 Identities=16% Similarity=0.176 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHh
Q 025520 93 HAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA 157 (251)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa 157 (251)
..+.+++.+.+.+.|.++++|||||+.-+.. |.+.. .+....+++.-||.==-||+.
T Consensus 100 ~~~~~~~~L~~~~Id~Li~IGGdgS~~~a~~-L~~~~-------~~~g~~i~vvgIPkTIDNDl~ 156 (403)
T PRK06555 100 PLKVAAERLAADGVDILHTIGGDDTNTTAAD-LAAYL-------AENGYDLTVVGLPKTIDNDVV 156 (403)
T ss_pred HHHHHHHHHHHcCCCEEEEECChhHHHHHHH-HHHHH-------HHhCCCceEEEeeeeeeCCCC
Confidence 4556677788889999999999999987644 32100 001236899999988889986
No 95
>PRK14072 6-phosphofructokinase; Provisional
Probab=85.31 E-value=2.9 Score=39.28 Aligned_cols=60 Identities=8% Similarity=0.052 Sum_probs=42.6
Q ss_pred ccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhh
Q 025520 91 PSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFAR 158 (251)
Q Consensus 91 ~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~ 158 (251)
++...++++.+.+.+.|.+|++|||||+..+.. |.+.. .....++++.-||.==-||+.-
T Consensus 89 ~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~-L~e~~-------~~~g~~i~vIgIPkTIDNDl~g 148 (416)
T PRK14072 89 RAEYERLLEVFKAHDIGYFFYNGGNDSMDTALK-VSQLA-------KKMGYPIRCIGIPKTIDNDLPG 148 (416)
T ss_pred hHHHHHHHHHHHHcCCCEEEEECChHHHHHHHH-HHHHH-------HHhCCCceEEEeeecccCCCCC
Confidence 345566677777889999999999999987654 32200 0013458999999877899983
No 96
>PLN02884 6-phosphofructokinase
Probab=84.63 E-value=2.6 Score=39.55 Aligned_cols=63 Identities=21% Similarity=0.365 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHh---hhcCCC
Q 025520 93 HAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA---RTFGWR 163 (251)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa---~~lg~~ 163 (251)
...++++.+.+.+.|.++++|||||+..+.. |.+.. ......+++.-+|.==-||+. .++|..
T Consensus 131 ~~~~i~~~L~~~~Id~LivIGGdgS~~~a~~-L~~~~-------~~~g~~i~vIGIPkTIDNDi~~tD~TiGFd 196 (411)
T PLN02884 131 KTSDIVDSIEARGINMLFVLGGNGTHAGANA-IHNEC-------RKRKMKVSVVGVPKTIDNDILLMDKTFGFD 196 (411)
T ss_pred cHHHHHHHHHHcCCCEEEEECCchHHHHHHH-HHHHH-------HHcCCCceEEeccccccCCCcCcccCCCHH
Confidence 4667777788889999999999999976644 32100 011245899999988889986 344544
No 97
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=83.84 E-value=9.8 Score=35.02 Aligned_cols=74 Identities=20% Similarity=0.212 Sum_probs=44.9
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEe---c-CCccHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL---T-SGPSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~---t-~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
.++++|+..+.-. ....++++...|+.. ..++.++. . .+.+...+.++.+.+.++|.||.+|| |++.++
T Consensus 26 ~~~~livt~~~~~---~~~~~~~v~~~L~~~---~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-Gs~iD~ 98 (376)
T cd08193 26 AKRVLVVTDPGIL---KAGLIDPLLASLEAA---GIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGG-GSSMDV 98 (376)
T ss_pred CCeEEEEcCcchh---hCccHHHHHHHHHHc---CCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHH
Confidence 3788888765421 123456666777653 23333331 1 12234556666666779999999998 788887
Q ss_pred HHHHH
Q 025520 122 VNGFF 126 (251)
Q Consensus 122 ln~l~ 126 (251)
...+.
T Consensus 99 aK~ia 103 (376)
T cd08193 99 AKLVA 103 (376)
T ss_pred HHHHH
Confidence 76653
No 98
>PLN02834 3-dehydroquinate synthase
Probab=83.57 E-value=11 Score=35.59 Aligned_cols=49 Identities=16% Similarity=0.285 Sum_probs=31.5
Q ss_pred cHHHHHHHHHHHcCCC---EEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCC
Q 025520 92 SHAIDITREAIKEGAD---AVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLG 151 (251)
Q Consensus 92 ~~a~~~~~~~~~~~~d---~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~G 151 (251)
+...++++.+.+.++| .||++|| |++.++...+.... ...+|+..+|.-
T Consensus 147 ~~v~~~~~~l~~~~~dr~~~VIAiGG-Gsv~D~ak~~A~~y----------~rgiplI~VPTT 198 (433)
T PLN02834 147 ETLMKVFDKALESRLDRRCTFVALGG-GVIGDMCGFAAASY----------QRGVNFVQIPTT 198 (433)
T ss_pred HHHHHHHHHHHhcCCCcCcEEEEECC-hHHHHHHHHHHHHh----------cCCCCEEEECCc
Confidence 4445555566665655 8888887 88888887553211 235788888873
No 99
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=82.71 E-value=4.8 Score=39.20 Aligned_cols=60 Identities=18% Similarity=0.189 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhh
Q 025520 92 SHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFART 159 (251)
Q Consensus 92 ~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~ 159 (251)
++..++.+.+.+.+.|.+|++|||||...+.. |.+.- .....++++.-+|.==-||+...
T Consensus 153 e~~~~i~~~l~~~~Id~LviIGGddS~~~A~~-Lae~~-------~~~g~~i~VIGVPKTIDNDl~~t 212 (550)
T cd00765 153 DQFKQAEETAKKLDLDALVVIGGDDSNTNAAL-LAENF-------RSKGLKTRVIGVPKTIDGDLKNK 212 (550)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHH-HHHHH-------HhcCCCceEEEEeeeecCCCCCC
Confidence 34555666666789999999999999876643 22100 01234588889998888999863
No 100
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=82.58 E-value=2.7 Score=41.42 Aligned_cols=57 Identities=12% Similarity=0.133 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHh
Q 025520 93 HAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA 157 (251)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa 157 (251)
+..++.+.+.+.+.|.+|++|||||...+.. |.+.- ......+++.-+|.==-||+.
T Consensus 161 ~~~~i~e~l~~l~Id~LvvIGGddS~~~A~~-Lae~~-------~~~~~~i~VIGIPKTIDNDL~ 217 (610)
T PLN03028 161 QVNAALAACEALKLDGLVIIGGVTSNTDAAQ-LAETF-------AEAKCKTKVVGVPVTLNGDLK 217 (610)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHH-HHHHH-------HHcCCCceEEEeceeeeCCCC
Confidence 4455556666779999999999999877643 22100 011347889999988889997
No 101
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=82.47 E-value=12 Score=34.73 Aligned_cols=112 Identities=20% Similarity=0.159 Sum_probs=66.1
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCcc----HHHHHHHHHHHcCCCEEEEEeCCchHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPS----HAIDITREAIKEGADAVIAVGGDGTLHE 120 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~----~a~~~~~~~~~~~~d~ivv~GGDGTl~~ 120 (251)
..++.+|+..|.-. .....+++...|+.. .+++.++.--.++ ...+.++.+.+.++|.||.+|| |+.-+
T Consensus 28 g~~r~liVTd~~~~---~~g~~~~v~~~L~~~---~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIalGG-GS~~D 100 (377)
T COG1454 28 GAKRALIVTDRGLA---KLGLLDKVLDSLDAA---GIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIALGG-GSVID 100 (377)
T ss_pred CCCceEEEECCccc---cchhHHHHHHHHHhc---CCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHH
Confidence 44899999988632 234566777777764 3444444333222 3334455566779999999999 77777
Q ss_pred HHHHHHhCCcc---c---ccccccccCCceEEEec--CCChhHHhhhcCCC
Q 025520 121 VVNGFFSAGKL---V---TNHNRESAHSTALGLIP--LGTGSDFARTFGWR 163 (251)
Q Consensus 121 vln~l~~~~~~---~---~~~~~~~~~~~~lgilP--~GTgN~fa~~lg~~ 163 (251)
+...+.-.... + .....-...+.||..|| .|||....+..-+.
T Consensus 101 ~AK~i~~~~~~~~~~~~~~~i~~~~~~~~plIaIPTTaGTGSEvT~~aVit 151 (377)
T COG1454 101 AAKAIALLAENPGSVLDYEGIGKVKKPKAPLIAIPTTAGTGSEVTPFAVIT 151 (377)
T ss_pred HHHHHHHHhhCCchhhhhcccccccCCCCCEEEecCCCcchhhhcCeEEEE
Confidence 77665421100 0 00000022337888888 58887777665554
No 102
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=81.91 E-value=4.6 Score=40.87 Aligned_cols=62 Identities=24% Similarity=0.412 Sum_probs=40.4
Q ss_pred HHHHHHHHHcCCCEEEEEeCCchHHHHHH----------HHHhCCcccccccccccCCceEEEecCCChhHHh
Q 025520 95 IDITREAIKEGADAVIAVGGDGTLHEVVN----------GFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA 157 (251)
Q Consensus 95 ~~~~~~~~~~~~d~ivv~GGDGTl~~vln----------~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa 157 (251)
..+++.+.+.+.|.+|++|||||+..+.. .|...+. +..........+++.-||.==-||+.
T Consensus 84 ~~~~~~L~~~~Id~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~-i~~~~~~~~~~l~vvGiPkTIDNDl~ 155 (745)
T TIGR02478 84 LKAARNLIKRGIDNLVVIGGDGSLTGADLFREEWPSLLEELVDTGK-ITAEQAEEHRHLTIVGLVGSIDNDMC 155 (745)
T ss_pred HHHHHHHHHhCCCEEEEECChhHHHHHHHHHHHhHHHHHHHHHccc-hhHHHHhcCCCCcEEEEccccccCCC
Confidence 56677777889999999999999977542 2222110 00001122347889999965579988
No 103
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=81.91 E-value=4.9 Score=40.70 Aligned_cols=59 Identities=20% Similarity=0.258 Sum_probs=43.5
Q ss_pred cHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHh
Q 025520 92 SHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA 157 (251)
Q Consensus 92 ~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa 157 (251)
++...+++.+.+.+.|.++++|||||+..+.. |.+.. +.-....+|+..||.==-||+.
T Consensus 465 ~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~-L~~~~------~~y~~~~i~vVgIPkTIDNDv~ 523 (762)
T cd00764 465 KDLETIAYNFQKYGIDGLIIVGGFEAYKGLLQ-LREAR------EQYEEFCIPMVLIPATVSNNVP 523 (762)
T ss_pred HHHHHHHHHHHHcCCCEEEEECChhHHHHHHH-HHHHH------hhCCCCCccEEEecccccCCCC
Confidence 46667777788889999999999999987653 43210 0011246999999999999986
No 104
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=81.87 E-value=9.6 Score=30.69 Aligned_cols=62 Identities=16% Similarity=0.193 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHhhcCCCccEEEEe-cCCccHHHHHHHHHHHcCCC-EEEEEeCCchHHHHHHHHH
Q 025520 64 KEWKKLLPYLRSRLSVDCNICESL-TSGPSHAIDITREAIKEGAD-AVIAVGGDGTLHEVVNGFF 126 (251)
Q Consensus 64 ~~~~~i~~~L~~~~~~~~~~~~~~-t~~~~~a~~~~~~~~~~~~d-~ivv~GGDGTl~~vln~l~ 126 (251)
...+++...|+.. +..+++.+.- -..+++..++++++..++++ .|.++|+++-|--++.++.
T Consensus 14 ~~~~~a~~~L~~~-gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpgvva~~t 77 (150)
T PF00731_consen 14 PIAEEAAKTLEEF-GIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAALPGVVASLT 77 (150)
T ss_dssp HHHHHHHHHHHHT-T-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HHHHHHHHS
T ss_pred HHHHHHHHHHHHc-CCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccchhhheecc
Confidence 4456677778774 3334444321 22466777778777666666 5667899999999999984
No 105
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=81.44 E-value=10 Score=34.75 Aligned_cols=73 Identities=18% Similarity=0.153 Sum_probs=44.5
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEe---cC-CccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL---TS-GPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~---t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
++++|+..+...+ ...++++...|+.. +.++.++. .+ +.+...+.++.+...++|.||.+|| |++.++.
T Consensus 25 ~~~liv~~~~~~~---~~~~~~v~~~L~~~---g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-GSviD~a 97 (370)
T cd08192 25 KRPLIVTDPGLAA---LGLVARVLALLEDA---GLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAFGG-GSALDLA 97 (370)
T ss_pred CeEEEEcCcchhh---CccHHHHHHHHHHc---CCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHH
Confidence 6888887765421 23456677777753 23343331 11 1224445555555678999999998 7888877
Q ss_pred HHHH
Q 025520 123 NGFF 126 (251)
Q Consensus 123 n~l~ 126 (251)
..+.
T Consensus 98 K~ia 101 (370)
T cd08192 98 KAVA 101 (370)
T ss_pred HHHH
Confidence 6653
No 106
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=81.24 E-value=5.5 Score=38.73 Aligned_cols=59 Identities=15% Similarity=0.128 Sum_probs=40.8
Q ss_pred cHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhh
Q 025520 92 SHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFAR 158 (251)
Q Consensus 92 ~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~ 158 (251)
++...+++.+.+.+.|.+|++|||||+..+.. |.+.- .....++++.-+|.==-||+..
T Consensus 148 e~~~~~~~~l~~~~Id~LviIGGdgS~~~A~~-Lae~~-------~~~g~~i~VIGIPkTIDNDl~~ 206 (539)
T TIGR02477 148 EQFAKALTTAKKLKLDGLVIIGGDDSNTNAAL-LAEYF-------AKHGLKTQVIGVPKTIDGDLKN 206 (539)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHH-HHHHH-------HhcCCCceEEEEeeeecCCCCC
Confidence 34555666667789999999999999876643 22100 0113468888999877899974
No 107
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=79.71 E-value=19 Score=33.49 Aligned_cols=92 Identities=14% Similarity=0.235 Sum_probs=50.3
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEE-E-------ecCCc-cHHHHHHHHHHHcCCC---EEEEEe
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICE-S-------LTSGP-SHAIDITREAIKEGAD---AVIAVG 113 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~-~-------~t~~~-~~a~~~~~~~~~~~~d---~ivv~G 113 (251)
.++++||.++.-.+ .....++++...|+.... .+.+.. . ..... +...++.+.+.+.+.| .||.+|
T Consensus 42 ~~r~liVtD~~v~~-~~~~l~~~v~~~L~~~g~-~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~~~~dr~d~IIaiG 119 (389)
T PRK06203 42 PKKVLVVIDSGVLR-AHPDLLEQITAYFAAHAD-VLELVAEPLVVPGGEAAKNDPALVEALHAAINRHGIDRHSYVLAIG 119 (389)
T ss_pred CCeEEEEECchHHH-hhhhHHHHHHHHHHhcCC-ceeeeeeEEEccCCccCCCcHHHHHHHHHHHHHcCCCCCceEEEeC
Confidence 47899999876432 111244556666654311 111111 1 12222 2355555555555555 999888
Q ss_pred CCchHHHHHHHHHhCCcccccccccccCCceEEEecC
Q 025520 114 GDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPL 150 (251)
Q Consensus 114 GDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~ 150 (251)
| |++.++...+..-. ...+|+..+|.
T Consensus 120 G-Gsv~D~ak~iA~~~----------~rgip~I~IPT 145 (389)
T PRK06203 120 G-GAVLDMVGYAAATA----------HRGVRLIRIPT 145 (389)
T ss_pred C-cHHHHHHHHHHHHh----------cCCCCEEEEcC
Confidence 7 88888877664211 23578888885
No 108
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=79.65 E-value=23 Score=30.09 Aligned_cols=79 Identities=20% Similarity=0.209 Sum_probs=40.0
Q ss_pred CCCeEEEEEcCCCCCC---ChhhHHHHHHHHHHhhcC-CCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHH
Q 025520 45 RRRDLVFVVNPRGASG---RTGKEWKKLLPYLRSRLS-VDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHE 120 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g---~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~ 120 (251)
+.+.+.||+ |..... .....|..+...+.+.+. .++++.+..+... +...+.+.+...++|.|++.+.+..- .
T Consensus 2 ~s~~i~vi~-p~~~~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~v~~~~~~-~~~~~~~~l~~~~~dgiii~~~~~~~-~ 78 (275)
T cd06295 2 RTDTIALVV-PEPHERDQSFSDPFFLSLLGGIADALAERGYDLLLSFVSSP-DRDWLARYLASGRADGVILIGQHDQD-P 78 (275)
T ss_pred CceEEEEEe-cCccccccccCCchHHHHHHHHHHHHHHcCCEEEEEeCCch-hHHHHHHHHHhCCCCEEEEeCCCCCh-H
Confidence 456778887 653222 222344443333332221 2455555444332 33344444445689999998876542 4
Q ss_pred HHHHHH
Q 025520 121 VVNGFF 126 (251)
Q Consensus 121 vln~l~ 126 (251)
.++.+.
T Consensus 79 ~~~~~~ 84 (275)
T cd06295 79 LPERLA 84 (275)
T ss_pred HHHHHH
Confidence 455554
No 109
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=78.01 E-value=7.2 Score=39.46 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=42.7
Q ss_pred cHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHh
Q 025520 92 SHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA 157 (251)
Q Consensus 92 ~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa 157 (251)
++...+++.+.+.+.|.++++|||||+..+.. |.+.. ..-....+++..||.==-||+.
T Consensus 465 ~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~-L~~~~------~~~~~~~i~vvgIPkTIDNDi~ 523 (745)
T TIGR02478 465 KDLGMIAYYFQKHKIDGLLIIGGFEAFEALLQ-LEQAR------EKYPAFRIPMVVIPATISNNVP 523 (745)
T ss_pred hHHHHHHHHHHHcCCCEEEEeCChHHHHHHHH-HHHHH------hhCCCCCccEEEecccccCCCC
Confidence 45667777788889999999999999986654 22110 0001246899999998889987
No 110
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=77.74 E-value=25 Score=32.55 Aligned_cols=93 Identities=17% Similarity=0.164 Sum_probs=51.2
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCcc----EEEE-e---cCCc-cHHHHHHHHHHHcCCC---EEEEEe
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCN----ICES-L---TSGP-SHAIDITREAIKEGAD---AVIAVG 113 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~----~~~~-~---t~~~-~~a~~~~~~~~~~~~d---~ivv~G 113 (251)
.++++||.++.-.+ .....++++...|+... ..+. ..++ . +.+. ....++.+.+.+.+.| .||++|
T Consensus 30 ~~r~lvVtD~~v~~-~~~~~~~~l~~~L~~~g-~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~~~~~r~~~IIalG 107 (369)
T cd08198 30 RPKVLVVIDSGVAQ-ANPQLASDIQAYAAAHA-DALRLVAPPHIVPGGEACKNDPDLVEALHAAINRHGIDRHSYVIAIG 107 (369)
T ss_pred CCeEEEEECcchHH-hhhhHHHHHHHHHHhcC-CceeeeeeeEecCCCccCCChHHHHHHHHHHHHHcCCCcCcEEEEEC
Confidence 47899999976533 11123455556665431 0111 1111 1 1121 2234555666665565 899888
Q ss_pred CCchHHHHHHHHHhCCcccccccccccCCceEEEecCC
Q 025520 114 GDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLG 151 (251)
Q Consensus 114 GDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~G 151 (251)
| |++.++...+.... ...+|+..+|.=
T Consensus 108 G-G~v~D~ag~vA~~~----------~rGip~I~IPTT 134 (369)
T cd08198 108 G-GAVLDAVGYAAATA----------HRGVRLIRIPTT 134 (369)
T ss_pred C-hHHHHHHHHHHHHh----------cCCCCEEEECCC
Confidence 8 99999988775311 235777777743
No 111
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=77.62 E-value=24 Score=29.86 Aligned_cols=74 Identities=11% Similarity=0.160 Sum_probs=40.5
Q ss_pred eEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEec---CCccHHHHHHHHHHHcCCCEEEEEeCCchH-HHHH
Q 025520 48 DLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLT---SGPSHAIDITREAIKEGADAVIAVGGDGTL-HEVV 122 (251)
Q Consensus 48 ~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t---~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl-~~vl 122 (251)
|+.||+ |... ...|.++...+...+. .++++.+..+ .++....++.+++...+.|.|++++.|-.. .+.+
T Consensus 1 ~Igvi~-~~~~----~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~~~~~~~~~l 75 (273)
T cd06310 1 KIALVP-KGTT----SDFWQAVKAGAEAAAKELGVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPTDAKALVPPL 75 (273)
T ss_pred CeEEEe-cCCC----cHHHHHHHHHHHHHHHHcCCEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCCChhhhHHHH
Confidence 466776 3321 2344444433332221 2355544433 234455566777777789999998877543 4566
Q ss_pred HHHH
Q 025520 123 NGFF 126 (251)
Q Consensus 123 n~l~ 126 (251)
..+.
T Consensus 76 ~~~~ 79 (273)
T cd06310 76 KEAK 79 (273)
T ss_pred HHHH
Confidence 6654
No 112
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=77.22 E-value=33 Score=29.15 Aligned_cols=63 Identities=10% Similarity=0.086 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHhhcC-CCccEEEEecCC--ccHHHHHHHHHHHcCCCEEEEEeCCch-HHHHHHHHH
Q 025520 64 KEWKKLLPYLRSRLS-VDCNICESLTSG--PSHAIDITREAIKEGADAVIAVGGDGT-LHEVVNGFF 126 (251)
Q Consensus 64 ~~~~~i~~~L~~~~~-~~~~~~~~~t~~--~~~a~~~~~~~~~~~~d~ivv~GGDGT-l~~vln~l~ 126 (251)
..|.++..-++..+. .++++.++.+.. +....+.++++...+.|.|++.+.+.+ +...+..+.
T Consensus 13 ~~~~~~~~g~~~~~~~~g~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~l~~~~ 79 (271)
T cd06312 13 PFWTVVKNGAEDAAKDLGVDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIPDPDALDPAIKRAV 79 (271)
T ss_pred cHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHHHHHH
Confidence 344444443333221 235555555543 334455666777789999999998865 455666654
No 113
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=76.95 E-value=4 Score=39.82 Aligned_cols=58 Identities=14% Similarity=0.117 Sum_probs=41.3
Q ss_pred cHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHh
Q 025520 92 SHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA 157 (251)
Q Consensus 92 ~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa 157 (251)
++..++++.+.+.+.|.+|++|||||+..+.. |.+.- ......+++.-+|.==-||+.
T Consensus 151 e~~~~i~~~l~~~~Id~LviIGGd~S~~~A~~-Lae~~-------~~~~~~i~VIGIPkTIDNDl~ 208 (555)
T PRK07085 151 EQKEACLETVKKLKLDGLVIIGGDDSNTNAAI-LAEYF-------AKHGCKTQVIGVPKTIDGDLK 208 (555)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHH-HHHHH-------HHhCCCccEEEEeeeecCCCC
Confidence 34556666677789999999999999977653 33210 011347889999988889996
No 114
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=76.80 E-value=31 Score=28.74 Aligned_cols=47 Identities=15% Similarity=0.120 Sum_probs=30.6
Q ss_pred CccEEEEecC-CccHHHHHHHHHHHcCCCEEEEEeCCchHH-HHHHHHH
Q 025520 80 DCNICESLTS-GPSHAIDITREAIKEGADAVIAVGGDGTLH-EVVNGFF 126 (251)
Q Consensus 80 ~~~~~~~~t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~-~vln~l~ 126 (251)
++++.+..+. ++....+.++++...+.|.|++.+.+.... +.+..+.
T Consensus 29 g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~~~~~~~~~~~~l~ 77 (267)
T cd01536 29 GVELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISPVDSAALTPALKKAN 77 (267)
T ss_pred CceEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCCchhHHHHHHHHH
Confidence 4666555554 344556777777777899999888775433 3566654
No 115
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=75.94 E-value=9.1 Score=33.10 Aligned_cols=64 Identities=22% Similarity=0.255 Sum_probs=46.5
Q ss_pred EEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChh
Q 025520 83 ICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGS 154 (251)
Q Consensus 83 ~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN 154 (251)
+..+.....+...++++.+...+.|.|+|.|-||.-.+-+..++..- ....++|+.+.|.+..+
T Consensus 19 ~tliDP~k~~~~~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~i--------k~~~~lPvilfP~~~~~ 82 (240)
T COG1646 19 LTLIDPDKTEEADEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAI--------KERTDLPVILFPGSPSG 82 (240)
T ss_pred EEEeCcccccccHHHHHHHHHcCCCEEEECCcccccHHHHHHHHHHH--------HhhcCCCEEEecCChhc
Confidence 44455554467788888888899999999999998766555555421 11568999999988744
No 116
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=75.56 E-value=10 Score=37.06 Aligned_cols=61 Identities=16% Similarity=0.119 Sum_probs=41.3
Q ss_pred cHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhhc
Q 025520 92 SHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTF 160 (251)
Q Consensus 92 ~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~l 160 (251)
++..++.+.+.+.+.|.+|++|||||...+.. |.+.- .....++++.-+|.==-||+....
T Consensus 177 e~~~~~~~~l~~l~Id~LViIGGddS~~~A~~-Lae~~-------~~~g~~i~VIGVPKTIDNDL~~td 237 (568)
T PLN02251 177 EQFKQAEETATKLDLDGLVVIGGDDSNTNACL-LAEYF-------RAKNLKTRVIGCPKTIDGDLKSKE 237 (568)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHH-HHHHH-------HhcCCCeeEEEeCceEeCCCCCCc
Confidence 34556666666779999999999999877654 22100 012345888888987789987543
No 117
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=75.54 E-value=6.9 Score=36.03 Aligned_cols=69 Identities=23% Similarity=0.367 Sum_probs=43.7
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEe-cCCc--cHHHHHHHHHHHcCCCEEEEEeCCchHHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL-TSGP--SHAIDITREAIKEGADAVIAVGGDGTLHEVVN 123 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~-t~~~--~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln 123 (251)
++++|+..+.+. .++++...|+.. ++++.++. ...+ +...+.++.+...++|.||.+|| |++.++..
T Consensus 23 ~r~livtd~~~~------~~~~v~~~L~~~---g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~~D~aK 92 (374)
T cd08183 23 RRVLLVTGASSL------RAAWLIEALRAA---GIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGG-GSVIDAGK 92 (374)
T ss_pred CcEEEEECCchH------HHHHHHHHHHHc---CCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecC-chHHHHHH
Confidence 789999887652 556677777763 23443332 1122 23444555555678999999998 77777776
Q ss_pred HH
Q 025520 124 GF 125 (251)
Q Consensus 124 ~l 125 (251)
.+
T Consensus 93 ~i 94 (374)
T cd08183 93 AI 94 (374)
T ss_pred HH
Confidence 55
No 118
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=75.44 E-value=36 Score=30.06 Aligned_cols=80 Identities=20% Similarity=0.122 Sum_probs=46.7
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCc-hHHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDG-TLHEVVN 123 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDG-Tl~~vln 123 (251)
..+++.+|+++.+. .+....+.+...++.... .+...........+....++++...++|.|++. +|+ -...++.
T Consensus 131 g~~~~~~i~~~~~~--~g~~~~~~~~~~~~~~G~-~v~~~~~~~~~~~d~~~~~~~i~~~~pdaV~~~-~~~~~a~~~~~ 206 (341)
T cd06341 131 GGTRAVALVTALSA--AVSAAAALLARSLAAAGV-SVAGIVVITATAPDPTPQAQQAAAAGADAIITV-LDAAVCASVLK 206 (341)
T ss_pred CCcEEEEEEeCCcH--HHHHHHHHHHHHHHHcCC-ccccccccCCCCCCHHHHHHHHHhcCCCEEEEe-cChHHHHHHHH
Confidence 36788888766531 223444455556665421 111111222234567777888877889988765 566 7778888
Q ss_pred HHHhC
Q 025520 124 GFFSA 128 (251)
Q Consensus 124 ~l~~~ 128 (251)
.+...
T Consensus 207 ~~~~~ 211 (341)
T cd06341 207 AVRAA 211 (341)
T ss_pred HHHHc
Confidence 88654
No 119
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=75.41 E-value=35 Score=28.90 Aligned_cols=35 Identities=29% Similarity=0.358 Sum_probs=25.1
Q ss_pred cHHHHHHHHHHHcCCCEEEEEeCCch-HHHHHHHHH
Q 025520 92 SHAIDITREAIKEGADAVIAVGGDGT-LHEVVNGFF 126 (251)
Q Consensus 92 ~~a~~~~~~~~~~~~d~ivv~GGDGT-l~~vln~l~ 126 (251)
....+..+++...+.|.|++.+.|-. +.++++.+.
T Consensus 47 ~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~l~~~~ 82 (272)
T cd06300 47 AQQIADIRNLIAQGVDAIIINPASPTALNPVIEEAC 82 (272)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHH
Confidence 34556677777789999999998853 455677664
No 120
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=75.18 E-value=33 Score=29.18 Aligned_cols=74 Identities=11% Similarity=-0.012 Sum_probs=38.7
Q ss_pred EEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecC-CccHHHHHHHHHHHcCCCEEEEEeCCc-hHHHHHHHHH
Q 025520 49 LVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTS-GPSHAIDITREAIKEGADAVIAVGGDG-TLHEVVNGFF 126 (251)
Q Consensus 49 i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~-~~~~a~~~~~~~~~~~~d~ivv~GGDG-Tl~~vln~l~ 126 (251)
+.|++. ...+.-....+..+...+++. ++++....+. ++....+..+.+...+.|.|++.+.|- .+.+.+..+.
T Consensus 2 igv~~~-~~~~~~~~~~~~~i~~~~~~~---g~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~~~~~~~~~i~~~~ 77 (282)
T cd06318 2 IGFSQY-TLNSPFFAALTEAAKAHAKAL---GYELISTDAQGDLTKQIADVEDLLTRGVNVLIINPVDPEGLVPAVAAAK 77 (282)
T ss_pred eeEEec-cccCHHHHHHHHHHHHHHHHc---CCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecCCccchHHHHHHHH
Confidence 556663 322212223334444455543 3555443332 223334566677788999999988763 2345566554
No 121
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=74.40 E-value=11 Score=34.68 Aligned_cols=73 Identities=14% Similarity=0.136 Sum_probs=44.1
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEec---C-CccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLT---S-GPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t---~-~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
++++|+..+.+-+ ....++++...|+.. ++++.++.. + +.+...+.++.+.+.++|.||.+|| |++.++.
T Consensus 24 ~r~livt~~~~~~--~~g~~~~v~~~L~~~---g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GSviD~A 97 (375)
T cd08179 24 KKAFIVTGGGSMK--KFGFLDKVEAYLKEA---GIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALGG-GSPIDAA 97 (375)
T ss_pred CeEEEEeCchHHH--hCChHHHHHHHHHHc---CCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHH
Confidence 6888887665422 123455666777653 344444422 1 2234555556666678999999998 6777766
Q ss_pred HHH
Q 025520 123 NGF 125 (251)
Q Consensus 123 n~l 125 (251)
..+
T Consensus 98 K~i 100 (375)
T cd08179 98 KAM 100 (375)
T ss_pred HHH
Confidence 654
No 122
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=73.64 E-value=26 Score=28.43 Aligned_cols=74 Identities=16% Similarity=0.235 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHhhcCCCccEEEE-ecCCccHHHHHHHHHHHcCCCE-EEEEeCCchHHHHHHHHHhCCcccccccccccC
Q 025520 64 KEWKKLLPYLRSRLSVDCNICES-LTSGPSHAIDITREAIKEGADA-VIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAH 141 (251)
Q Consensus 64 ~~~~~i~~~L~~~~~~~~~~~~~-~t~~~~~a~~~~~~~~~~~~d~-ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~ 141 (251)
...++....|+.. +..+++.+. .-..+++..++++++..++.++ |.++|+.+-|--++.++.
T Consensus 12 ~~~~~a~~~L~~~-gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~~t--------------- 75 (156)
T TIGR01162 12 PTMKKAADILEEF-GIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMVAALT--------------- 75 (156)
T ss_pred HHHHHHHHHHHHc-CCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHHHhcc---------------
Confidence 3455666677664 334555543 2335678888888887777774 456788888888888774
Q ss_pred CceEEEecCCCh
Q 025520 142 STALGLIPLGTG 153 (251)
Q Consensus 142 ~~~lgilP~GTg 153 (251)
..|+.-+|.-++
T Consensus 76 ~~PVIgvP~~~~ 87 (156)
T TIGR01162 76 PLPVIGVPVPSK 87 (156)
T ss_pred CCCEEEecCCcc
Confidence 467777777653
No 123
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=73.59 E-value=46 Score=27.82 Aligned_cols=74 Identities=12% Similarity=0.084 Sum_probs=40.0
Q ss_pred EEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHH
Q 025520 49 LVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFF 126 (251)
Q Consensus 49 i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~ 126 (251)
+.|++ |...+.-....++.+...+++. ++++.+..+.. +....+..+++...++|.|++..++..-.+.+..+.
T Consensus 2 igvv~-~~~~~~~~~~~~~~i~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~ 76 (266)
T cd06282 2 VGVVL-PSLANPVFAECVQGIQEEARAA---GYSLLLATTDYDAEREADAVETLLRQRVDGLILTVADAATSPALDLLD 76 (266)
T ss_pred eEEEe-CCCCcchHHHHHHHHHHHHHHC---CCEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCchHHHHHHh
Confidence 44555 3322222233344444555442 35555554432 333445666777778999999888754345566554
No 124
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=73.15 E-value=46 Score=27.38 Aligned_cols=61 Identities=13% Similarity=0.111 Sum_probs=39.0
Q ss_pred CccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCCh
Q 025520 80 DCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTG 153 (251)
Q Consensus 80 ~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTg 153 (251)
++++..+.+.. ++...+.++++...++|.||+.+.+.+....+..+. ..++|+..+.....
T Consensus 29 g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~~~~l~-------------~~~ip~v~~~~~~~ 90 (264)
T cd01537 29 GYQVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDLTAPTIVKLAR-------------KAGIPVVLVDRDIP 90 (264)
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCcchhHHHHhh-------------hcCCCEEEeccCCC
Confidence 45665554443 334567777888789999999998876654455443 23577766655543
No 125
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=72.21 E-value=40 Score=29.04 Aligned_cols=63 Identities=21% Similarity=0.386 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHhhcC-CCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCch-HHHHHHHHH
Q 025520 64 KEWKKLLPYLRSRLS-VDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGT-LHEVVNGFF 126 (251)
Q Consensus 64 ~~~~~i~~~L~~~~~-~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGT-l~~vln~l~ 126 (251)
..|..+...+.+.+. .++++.+..+.. +....+..+++...++|.|++.+.|.+ +.+.+..+.
T Consensus 12 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~l~~l~ 77 (288)
T cd01538 12 ERWIRDRPNFEAALKELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPVDGEALASAVEKAA 77 (288)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhHHHHHHHHH
Confidence 455555443333221 245555555542 334456677777889999999988876 466666664
No 126
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=72.05 E-value=23 Score=34.47 Aligned_cols=85 Identities=13% Similarity=0.158 Sum_probs=47.1
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCc------cHHHHHHHHHHHc---CCCEEEEEeCCch
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGP------SHAIDITREAIKE---GADAVIAVGGDGT 117 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~------~~a~~~~~~~~~~---~~d~ivv~GGDGT 117 (251)
.++.+|+.... ....+++...|+.. ++.+.......+ ....++.+.+.+. +.|.||.+|| |+
T Consensus 210 ~k~~iV~d~~v-----~~~~~~l~~~L~~~---g~~v~~~v~p~~E~~ksl~~v~~~~~~l~~~~~~r~D~IIAIGG-Gs 280 (542)
T PRK14021 210 VKVALIHTQPV-----QRHSDRARTLLRQG---GYEVSDIVIPDAEAGKTIEVANGIWQRLGNEGFTRSDAIVGLGG-GA 280 (542)
T ss_pred CeEEEEECccH-----HHHHHHHHHHHHhC---CCceEEEEeCCCcccCCHHHHHHHHHHHHhcCCCCCcEEEEEcC-hH
Confidence 46667766533 12345566666653 223322222222 2333444444444 4889888888 89
Q ss_pred HHHHHHHHHhCCcccccccccccCCceEEEecC
Q 025520 118 LHEVVNGFFSAGKLVTNHNRESAHSTALGLIPL 150 (251)
Q Consensus 118 l~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~ 150 (251)
+.+++..+.... ...+|+..+|.
T Consensus 281 v~D~AKfvA~~y----------~rGi~~i~vPT 303 (542)
T PRK14021 281 ATDLAGFVAATW----------MRGIRYVNCPT 303 (542)
T ss_pred HHHHHHHHHHHH----------HcCCCEEEeCC
Confidence 999888775311 23577777776
No 127
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=71.87 E-value=46 Score=28.03 Aligned_cols=59 Identities=17% Similarity=0.134 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhcCCCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCc-hHHHHHHHHHh
Q 025520 66 WKKLLPYLRSRLSVDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDG-TLHEVVNGFFS 127 (251)
Q Consensus 66 ~~~i~~~L~~~~~~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDG-Tl~~vln~l~~ 127 (251)
++.++..++.. ++++.+..+.. +....+..+.+...++|.|++..+|. +..+++..+..
T Consensus 18 ~~gi~~~~~~~---g~~~~~~~~~~~~~~~~~~l~~~~~~~vdgii~~~~~~~~~~~~i~~~~~ 78 (273)
T cd06305 18 LAGTKAEAEAL---GGDLRVYDAGGDDAKQADQIDQAIAQKVDAIIIQHGRAEVLKPWVKRALD 78 (273)
T ss_pred HHHHHHHHHHc---CCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhhHHHHHHHHH
Confidence 33444445443 35555544432 22334556666677899999988775 35677776653
No 128
>PTZ00287 6-phosphofructokinase; Provisional
Probab=70.70 E-value=8.1 Score=41.48 Aligned_cols=59 Identities=14% Similarity=0.125 Sum_probs=38.5
Q ss_pred cHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhh
Q 025520 92 SHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFAR 158 (251)
Q Consensus 92 ~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~ 158 (251)
+...+.++.+.+.+.|.+||+|||||+..+.. |.+.- .....++.+.-+|.==-||+..
T Consensus 915 e~~~ka~~~lk~l~ID~LVvIGGDgS~t~A~~-LaE~f-------~~~gi~i~VIGVPkTIDNDL~~ 973 (1419)
T PTZ00287 915 ENRNKVCETVTNLQLNGLVMPGSNVTITEAAL-LAEYF-------LEKKIPTSVVGIPLTGSNNLIH 973 (1419)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCchHHHHHHH-HHHHH-------HhcCCCccEEEeCceeeCCCCC
Confidence 34455555666779999999999999976643 32100 0012234488889877899975
No 129
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=70.54 E-value=49 Score=27.88 Aligned_cols=74 Identities=14% Similarity=0.095 Sum_probs=40.8
Q ss_pred eEEEEEcCCCCCCChhhHHHHHHHHHHhhcCC--CccEEEEecC-CccHHHHHHHHHHHcCCCEEEEEeCCch-HHHHHH
Q 025520 48 DLVFVVNPRGASGRTGKEWKKLLPYLRSRLSV--DCNICESLTS-GPSHAIDITREAIKEGADAVIAVGGDGT-LHEVVN 123 (251)
Q Consensus 48 ~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~--~~~~~~~~t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGT-l~~vln 123 (251)
++.||+.... ...|.++..-+...+.. ++++.+..+. ++....+..+++...+.|.|++.+.|.. ..+++.
T Consensus 1 ~igvi~~~~~-----~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~ 75 (272)
T cd06301 1 KIGVSMANFD-----DNFLTLLRNAMKEHAKVLGGVELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPVDTAATAPIVK 75 (272)
T ss_pred CeeEeecccC-----CHHHHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhhHHHHH
Confidence 3566664321 24555554433333222 3555444332 2344456667777779999999988854 345666
Q ss_pred HHH
Q 025520 124 GFF 126 (251)
Q Consensus 124 ~l~ 126 (251)
.+.
T Consensus 76 ~l~ 78 (272)
T cd06301 76 AAN 78 (272)
T ss_pred HHH
Confidence 654
No 130
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=69.80 E-value=7.1 Score=35.70 Aligned_cols=73 Identities=19% Similarity=0.273 Sum_probs=45.8
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEe--cCC--ccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL--TSG--PSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~--t~~--~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
++++||.++ +- .....++++...|++. ++++.++. ... ..+..+.++.+...++|.||.+|| |++-++.
T Consensus 22 gr~lvVt~~-~~--~~~~~~~~v~~~L~~~---~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~~D~a 94 (366)
T PF00465_consen 22 GRVLVVTDP-SL--SKSGLVDRVLDALEEA---GIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIGG-GSVMDAA 94 (366)
T ss_dssp TEEEEEEEH-HH--HHHTHHHHHHHHHHHT---TCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEES-HHHHHHH
T ss_pred CCEEEEECc-hH--HhCccHHHHHHHHhhC---ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcCC-CCcCcHH
Confidence 389999988 32 2233567777778654 23333332 222 235556666677789999999999 6666665
Q ss_pred HHHH
Q 025520 123 NGFF 126 (251)
Q Consensus 123 n~l~ 126 (251)
..+.
T Consensus 95 K~va 98 (366)
T PF00465_consen 95 KAVA 98 (366)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 131
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=69.76 E-value=63 Score=27.93 Aligned_cols=77 Identities=10% Similarity=0.107 Sum_probs=39.9
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecC-CccHHHHHHHHHHHcCCCEEEEEeCC-chHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTS-GPSHAIDITREAIKEGADAVIAVGGD-GTLHEV 121 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~-~~~~a~~~~~~~~~~~~d~ivv~GGD-GTl~~v 121 (251)
..+.+.+|+ |... ...|.++...++..+. .++++.+..+. ++....+..+++...+.|.|++.+.| .++++.
T Consensus 25 ~~~~I~vi~-~~~~----~~f~~~~~~~i~~~~~~~G~~~~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~~~~~~~~~ 99 (295)
T PRK10653 25 AKDTIALVV-STLN----NPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNA 99 (295)
T ss_pred cCCeEEEEe-cCCC----ChHHHHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHHH
Confidence 445677766 4432 2344444433333221 23555444332 23344455666667789988887665 334456
Q ss_pred HHHHH
Q 025520 122 VNGFF 126 (251)
Q Consensus 122 ln~l~ 126 (251)
+..+.
T Consensus 100 l~~~~ 104 (295)
T PRK10653 100 VKMAN 104 (295)
T ss_pred HHHHH
Confidence 66554
No 132
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=69.68 E-value=29 Score=32.06 Aligned_cols=90 Identities=18% Similarity=0.154 Sum_probs=55.2
Q ss_pred CeEEEEEcCCCCCCChhhHH-HHHHHHHHhhcCCCccEE-EEecC-CccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEW-KKLLPYLRSRLSVDCNIC-ESLTS-GPSHAIDITREAIKEGADAVIAVGGDGTLHEVVN 123 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~-~~i~~~L~~~~~~~~~~~-~~~t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln 123 (251)
++.+|+.-+.. .+.. +++.+.|... ++.+. ++..+ +.++..++++++...++|+|+.+|| |++.+++.
T Consensus 31 ~~~lvv~g~~~-----~~~~~~~~~~~l~~~---g~~~~~~~~~~a~~~ev~~~~~~~~~~~~d~vIGVGG-Gk~iD~aK 101 (360)
T COG0371 31 SRALVVTGENT-----YAIAGEKVEKSLKDE---GLVVHVVFVGEASEEEVERLAAEAGEDGADVVIGVGG-GKTIDTAK 101 (360)
T ss_pred CceEEEEChhH-----HHHHHHHHHHHhccc---CcceeeeecCccCHHHHHHHHHHhcccCCCEEEEecC-cHHHHHHH
Confidence 67778876653 2222 2344455442 22222 22222 3345555555555577899999998 89999999
Q ss_pred HHHhCCcccccccccccCCceEEEecCCChhHHh
Q 025520 124 GFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA 157 (251)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa 157 (251)
.+.. ..++|+..+|.=..+|=.
T Consensus 102 ~~A~------------~~~~pfIsvPT~AS~Da~ 123 (360)
T COG0371 102 AAAY------------RLGLPFISVPTIASTDAI 123 (360)
T ss_pred HHHH------------HcCCCEEEecCccccccc
Confidence 8864 357888999876666543
No 133
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=69.67 E-value=57 Score=27.50 Aligned_cols=61 Identities=8% Similarity=-0.026 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhhcCCCccEEEEecCCc-cHHHHHHHHHHHcCCCEEEEEeCCch-HHHHHHHHH
Q 025520 65 EWKKLLPYLRSRLSVDCNICESLTSGP-SHAIDITREAIKEGADAVIAVGGDGT-LHEVVNGFF 126 (251)
Q Consensus 65 ~~~~i~~~L~~~~~~~~~~~~~~t~~~-~~a~~~~~~~~~~~~d~ivv~GGDGT-l~~vln~l~ 126 (251)
.++.+...++.. +.++++....+... ..-.+..+.+...+.|.|++.+.|.. ..+++..+.
T Consensus 17 ~~~gi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiIi~~~~~~~~~~~i~~~~ 79 (271)
T cd06321 17 LAKGAEAAAKKL-NPGVKVTVVSADYDLNKQVSQIDNFIAAKVDLILLNAVDSKGIAPAVKRAQ 79 (271)
T ss_pred HHHHHHHHHHHh-CCCeEEEEccCCCCHHHHHHHHHHHHHhCCCEEEEeCCChhHhHHHHHHHH
Confidence 344444555542 23445443333322 22234455666778999999888764 456666664
No 134
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=69.16 E-value=66 Score=26.80 Aligned_cols=56 Identities=18% Similarity=0.105 Sum_probs=33.8
Q ss_pred HHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHH
Q 025520 67 KKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFF 126 (251)
Q Consensus 67 ~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~ 126 (251)
+.+...+++. ++++..+......+..+..+++...+.|.|++...|-+- ..+..+.
T Consensus 19 ~~i~~~~~~~---g~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~-~~~~~~~ 74 (266)
T cd06278 19 EALSRALQAR---GYQPLLINTDDDEDLDAALRQLLQYRVDGVIVTSGTLSS-ELAEECR 74 (266)
T ss_pred HHHHHHHHHC---CCeEEEEcCCCCHHHHHHHHHHHHcCCCEEEEecCCCCH-HHHHHHh
Confidence 3444444442 355544444443355566777778899999999887654 3455553
No 135
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=68.96 E-value=77 Score=27.92 Aligned_cols=79 Identities=11% Similarity=0.101 Sum_probs=43.4
Q ss_pred CCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecC-CccHHHHHHHHHHHcCCCEEEEEeCCchHHH
Q 025520 43 SSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTS-GPSHAIDITREAIKEGADAVIAVGGDGTLHE 120 (251)
Q Consensus 43 ~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~ 120 (251)
+.+.+.+.+++...+ ...|..+..-+...+. .++.+.+..+. +.+...+..+.+...+.|.|++.+.+.....
T Consensus 61 ~~~~~~Igvv~~~~~-----~~~~~~i~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~ 135 (342)
T PRK10014 61 GGQSGVIGLIVRDLS-----APFYAELTAGLTEALEAQGRMVFLLQGGKDGEQLAQRFSTLLNQGVDGVVIAGAAGSSDD 135 (342)
T ss_pred cCCCCEEEEEeCCCc-----cchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCCcHH
Confidence 345677888874322 2345444433332221 23444444333 2333445566777778999999988765455
Q ss_pred HHHHHH
Q 025520 121 VVNGFF 126 (251)
Q Consensus 121 vln~l~ 126 (251)
.+..+.
T Consensus 136 ~~~~l~ 141 (342)
T PRK10014 136 LREMAE 141 (342)
T ss_pred HHHHHh
Confidence 666554
No 136
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=67.55 E-value=59 Score=27.75 Aligned_cols=58 Identities=12% Similarity=0.117 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchH-HHHHHHHH
Q 025520 66 WKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTL-HEVVNGFF 126 (251)
Q Consensus 66 ~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl-~~vln~l~ 126 (251)
++.+...++.. ++++.+..+..+....+..+++...+.|.|++.+-|... -+++..+.
T Consensus 18 ~~gi~~~~~~~---g~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~~~~~~ 76 (289)
T cd01540 18 WKFAKKAAKEK---GFTVVKIDVPDGEKVLSAIDNLGAQGAKGFVICVPDVKLGPAIVAKAK 76 (289)
T ss_pred HHHHHHHHHHc---CCEEEEccCCCHHHHHHHHHHHHHcCCCEEEEccCchhhhHHHHHHHH
Confidence 33444455542 355554444433333455566667789999999888533 34556654
No 137
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=66.82 E-value=24 Score=27.41 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=24.9
Q ss_pred HHHHHHcCCCEEEEEeCCchHHHHHHHHHhC
Q 025520 98 TREAIKEGADAVIAVGGDGTLHEVVNGFFSA 128 (251)
Q Consensus 98 ~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~ 128 (251)
.+.+...++|.++++.||+-+..+++.|.+.
T Consensus 92 ~~~~~~~~~d~ivLvSgD~Df~~~i~~lr~~ 122 (149)
T cd06167 92 LELAYKRRIDTIVLVSGDSDFVPLVERLREL 122 (149)
T ss_pred HHHhhhcCCCEEEEEECCccHHHHHHHHHHc
Confidence 3333445789999999999999999999754
No 138
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=66.75 E-value=18 Score=38.78 Aligned_cols=58 Identities=14% Similarity=0.109 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhh
Q 025520 93 HAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFAR 158 (251)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~ 158 (251)
+..++.+.+.+.+.|.+|++|||||...+.. |.+.- .....++++.-+|.==-||+..
T Consensus 184 ~~~~~le~lkkl~Id~LVvIGGDgS~t~A~~-LaEy~-------~~~g~~I~VIGIPKTIDNDL~g 241 (1328)
T PTZ00468 184 QMRASLEICEKLKLHGLVVIGGDDSNTNAAV-LAEYF-------KRNSSSTVVVGCPKTIDGDLKN 241 (1328)
T ss_pred HHHHHHHHHHHhCCCEEEEECCchHHHHHHH-HHHHH-------HhcCCCeeEEEEeEEEcCCCCC
Confidence 4445555566678999999999999976543 32100 0123468899999888899974
No 139
>PRK05637 anthranilate synthase component II; Provisional
Probab=66.46 E-value=34 Score=28.84 Aligned_cols=60 Identities=13% Similarity=0.131 Sum_probs=36.4
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
++++++|=|--| ....+.+.|+.. +..+.++..+.+ . +++...++|.||+.||-|...+.
T Consensus 1 ~~~il~iD~~ds-------f~~nl~~~l~~~---g~~~~v~~~~~~--~----~~l~~~~~~~iIlsgGPg~~~d~ 60 (208)
T PRK05637 1 MTHVVLIDNHDS-------FVYNLVDAFAVA---GYKCTVFRNTVP--V----EEILAANPDLICLSPGPGHPRDA 60 (208)
T ss_pred CCEEEEEECCcC-------HHHHHHHHHHHC---CCcEEEEeCCCC--H----HHHHhcCCCEEEEeCCCCCHHHh
Confidence 467777777433 223356677764 234444443321 2 23334578999999999999886
No 140
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=66.31 E-value=1.9 Score=43.38 Aligned_cols=55 Identities=15% Similarity=0.112 Sum_probs=38.8
Q ss_pred EEEEEecccchhhhcccccccc----------ccCchhHHHHHHHHHHh--CCC--ccEEEEECCEEEE
Q 025520 195 YFINVADLHLSAKAGYYASRYK----------RFGNLCYVIGALQAFMG--HRN--QDLRVKVSSCLYI 249 (251)
Q Consensus 195 ~f~n~~~iG~~a~v~~~~~~~~----------~~G~l~Y~~~~~~~~~~--~~~--~~~~i~~dg~~~~ 249 (251)
.+.|++|||+||.+...++.+| ....+=|-+.|-+.+++ +++ .++.++-||+.++
T Consensus 614 VMNNYFGIGlDAKISLDFhnKReEhPeKcrSR~kn~MWYGvLGtKeLLhrTyrnLEQRV~LECDG~~i~ 682 (1099)
T KOG1170|consen 614 VMNNYFGIGLDAKISLDFHNKREEHPEKCRSRSKNFMWYGVLGTKELLHRTYRNLEQRVKLECDGVPID 682 (1099)
T ss_pred hhccccccccceeEeeecccccccChHHHhHHhhhcchhhhcchHHHHHHHHHhHHHHeeeecCCcccC
Confidence 4789999999999987765332 12445566667777763 443 5788889998865
No 141
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=66.06 E-value=57 Score=28.46 Aligned_cols=74 Identities=12% Similarity=-0.029 Sum_probs=41.5
Q ss_pred eEEEEEcCCCCCCChhhHHHHHHHHHHhhcC---CCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCch-HHHHH
Q 025520 48 DLVFVVNPRGASGRTGKEWKKLLPYLRSRLS---VDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGT-LHEVV 122 (251)
Q Consensus 48 ~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~---~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGT-l~~vl 122 (251)
++.||+.-.. ...|..+...+...+. .++++....+.. +....+..+++...++|.|++.+.|.+ +..++
T Consensus 1 ~Igviv~~~~-----~~~~~~~~~gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~~~~~~~~~~ 75 (303)
T cd01539 1 KIGVFLYKFD-----DTFISLVRKNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVDPTAAQTVI 75 (303)
T ss_pred CeEEEeeCCC-----ChHHHHHHHHHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhHHHHH
Confidence 4566774321 2445544444433322 234544444332 222335566777889999999988865 56677
Q ss_pred HHHH
Q 025520 123 NGFF 126 (251)
Q Consensus 123 n~l~ 126 (251)
+.+.
T Consensus 76 ~~~~ 79 (303)
T cd01539 76 NKAK 79 (303)
T ss_pred HHHH
Confidence 7765
No 142
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=66.02 E-value=78 Score=26.41 Aligned_cols=46 Identities=9% Similarity=0.180 Sum_probs=29.0
Q ss_pred ccEEEEecC-CccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHH
Q 025520 81 CNICESLTS-GPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFF 126 (251)
Q Consensus 81 ~~~~~~~t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~ 126 (251)
+++.+..+. ++....++++++...++|.|++.+.+....++++.+.
T Consensus 30 ~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~ 76 (268)
T cd06289 30 YTVFLANSGEDVERQEQLLSTMLEHGVAGIILCPAAGTSPDLLKRLA 76 (268)
T ss_pred CeEEEecCCCChHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHH
Confidence 454434332 2334456677777788999999987765445666664
No 143
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=65.27 E-value=69 Score=27.00 Aligned_cols=63 Identities=13% Similarity=0.192 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHhhcC-CCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCch-HHHHHHHHH
Q 025520 64 KEWKKLLPYLRSRLS-VDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGT-LHEVVNGFF 126 (251)
Q Consensus 64 ~~~~~i~~~L~~~~~-~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGT-l~~vln~l~ 126 (251)
..|..+...+..... .++++.++.+.. +....+..+++...++|.|++.+.|.. ..+.+..+.
T Consensus 12 ~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~l~~~~ 77 (277)
T cd06319 12 PFWQIMGRGVKSKAKALGYDAVELSAENSAKKELENLRTAIDKGVSGIIISPTNSSAAVTLLKLAA 77 (277)
T ss_pred hHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCchhhhHHHHHHHH
Confidence 455555444433221 235555444432 223345556666778999998887754 345665554
No 144
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=65.10 E-value=87 Score=26.80 Aligned_cols=76 Identities=13% Similarity=0.070 Sum_probs=39.3
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecC-CccHHHHHHHHHHHcCCCEEEEEeCCch-HHHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTS-GPSHAIDITREAIKEGADAVIAVGGDGT-LHEVVNG 124 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGT-l~~vln~ 124 (251)
|.+.+|+. .....-.....+.+...+++. ++++.+..+. +.....+..+.+...+.|.|++.+.|.. ....+..
T Consensus 1 ~~ig~i~~-~~~~~~~~~~~~gi~~~a~~~---gy~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~~~~~~~~~~~~~ 76 (280)
T cd06315 1 KNIIFVAS-DLKNGGILGVGEGVREAAKAI---GWNLRILDGRGSEAGQAAALNQAIALKPDGIVLGGVDAAELQAELEL 76 (280)
T ss_pred CeEEEEec-ccCCcHHHHHHHHHHHHHHHc---CcEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHH
Confidence 45666663 221111123333344444442 3555444333 2233345667777789999999988743 3344554
Q ss_pred HH
Q 025520 125 FF 126 (251)
Q Consensus 125 l~ 126 (251)
+.
T Consensus 77 ~~ 78 (280)
T cd06315 77 AQ 78 (280)
T ss_pred HH
Confidence 43
No 145
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=65.04 E-value=26 Score=32.32 Aligned_cols=106 Identities=17% Similarity=0.155 Sum_probs=57.9
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEe--cCCc--cHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL--TSGP--SHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~--t~~~--~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
.++++|+..+...+ ...++++...|+.. ++++.++. ...+ +...+.++.+.+.++|.||.+|| |++.++
T Consensus 30 ~~~~lvvtd~~~~~---~g~~~~v~~~L~~~---g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~ 102 (382)
T PRK10624 30 FKKALIVTDKTLVK---CGVVAKVTDVLDAA---GLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAIGG-GSPQDT 102 (382)
T ss_pred CCEEEEEeCcchhh---CcchHHHHHHHHHC---CCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHH
Confidence 36888888764322 23456677777753 23444432 1122 34445555555678999999998 777777
Q ss_pred HHHHH---hCCcc--c---ccccccccCCceEEEecC--CChhHHhh
Q 025520 122 VNGFF---SAGKL--V---TNHNRESAHSTALGLIPL--GTGSDFAR 158 (251)
Q Consensus 122 ln~l~---~~~~~--~---~~~~~~~~~~~~lgilP~--GTgN~fa~ 158 (251)
...+. ..+.. . ..........+|+..||. |||--...
T Consensus 103 aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTTagTGse~t~ 149 (382)
T PRK10624 103 CKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTTAGTAAEVTI 149 (382)
T ss_pred HHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCCCchhhhhcc
Confidence 76432 11000 0 000001123578999996 66654443
No 146
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=64.95 E-value=19 Score=33.37 Aligned_cols=74 Identities=14% Similarity=0.091 Sum_probs=44.9
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEe---c-CCccHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL---T-SGPSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~---t-~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
.++++||..+...+ ...++++...|+.. ++++.++. . .+.+...+.++.+...++|.||.+|| |++.++
T Consensus 21 ~~k~liVtd~~~~~---~g~~~~v~~~L~~~---gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~ 93 (398)
T cd08178 21 KKRAFIVTDRFMVK---LGYVDKVIDVLKRR---GVETEVFSDVEPDPSLETVRKGLELMNSFKPDTIIALGG-GSPMDA 93 (398)
T ss_pred CCeEEEEcChhHHh---CccHHHHHHHHHHC---CCeEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHH
Confidence 47888887654311 23556677777764 23443332 1 12234556666666778999999999 677776
Q ss_pred HHHHH
Q 025520 122 VNGFF 126 (251)
Q Consensus 122 ln~l~ 126 (251)
...+.
T Consensus 94 AK~iA 98 (398)
T cd08178 94 AKIMW 98 (398)
T ss_pred HHHHH
Confidence 66553
No 147
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=64.60 E-value=1e+02 Score=27.38 Aligned_cols=78 Identities=22% Similarity=0.246 Sum_probs=52.0
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEE--EEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNIC--ESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~--~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
..+++.+++....- +....+.+...+++. ++++. ........+....++++...++|.|++.+.......++
T Consensus 137 ~~~~v~ii~~~~~~---g~~~~~~~~~~~~~~---G~~v~~~~~~~~~~~d~s~~i~~i~~~~~d~v~~~~~~~~~~~~~ 210 (347)
T cd06335 137 GFKKVALLLDNTGW---GRSNRKDLTAALAAR---GLKPVAVEWFNWGDKDMTAQLLRAKAAGADAIIIVGNGPEGAQIA 210 (347)
T ss_pred CCCeEEEEeccCch---hhhHHHHHHHHHHHc---CCeeEEEeeecCCCccHHHHHHHHHhCCCCEEEEEecChHHHHHH
Confidence 46899999876532 234445566666653 23332 12222345677788888888999999998888888888
Q ss_pred HHHHhC
Q 025520 123 NGFFSA 128 (251)
Q Consensus 123 n~l~~~ 128 (251)
..+.+.
T Consensus 211 ~~~~~~ 216 (347)
T cd06335 211 NGMAKL 216 (347)
T ss_pred HHHHHc
Confidence 888654
No 148
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=64.34 E-value=29 Score=32.51 Aligned_cols=72 Identities=25% Similarity=0.212 Sum_probs=43.3
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEe---cC-CccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL---TS-GPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~---t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
++++|+..+..-+ ...++++...|+.. ++++.++. .+ +.+...+.++.+.+.++|.||.+|| |++.++.
T Consensus 24 ~~vlivt~~~~~~---~g~~~~v~~~L~~~---gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GSviD~A 96 (414)
T cd08190 24 RRVCLVTDPNLAQ---LPPVKVVLDSLEAA---GINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVAVGG-GSVIDTA 96 (414)
T ss_pred CeEEEEECcchhh---cchHHHHHHHHHHc---CCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHH
Confidence 7888888765422 23456677777653 24444332 11 1234445555566678999999999 6666665
Q ss_pred HHH
Q 025520 123 NGF 125 (251)
Q Consensus 123 n~l 125 (251)
..+
T Consensus 97 Kai 99 (414)
T cd08190 97 KAA 99 (414)
T ss_pred HHH
Confidence 544
No 149
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=63.62 E-value=99 Score=27.00 Aligned_cols=78 Identities=12% Similarity=0.228 Sum_probs=41.2
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
++.+.+.+++...+ ...|.++...+...+. .++++.+..+.. .+...++.+.+...++|.|++.+.+-...+.
T Consensus 59 ~~~~~Igvv~~~~~-----~~~~~~l~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~ 133 (328)
T PRK11303 59 GRTRSIGLIIPDLE-----NTSYARIAKYLERQARQRGYQLLIACSDDQPDNEMRCAEHLLQRQVDALIVSTSLPPEHPF 133 (328)
T ss_pred CCCceEEEEeCCCC-----CchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCChHH
Confidence 34567777774322 2344444443333221 235555444432 3333455666667789999998875433455
Q ss_pred HHHHH
Q 025520 122 VNGFF 126 (251)
Q Consensus 122 ln~l~ 126 (251)
+..+.
T Consensus 134 ~~~l~ 138 (328)
T PRK11303 134 YQRLQ 138 (328)
T ss_pred HHHHH
Confidence 55553
No 150
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=62.89 E-value=30 Score=31.84 Aligned_cols=73 Identities=16% Similarity=0.100 Sum_probs=44.5
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEe--cCCc--cHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL--TSGP--SHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~--t~~~--~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
.++++|+..+...+ ...++++...|+.. ++++.++. ...+ +...+.++.+.+.++|.||.+|| |++-++
T Consensus 29 ~~r~lvvt~~~~~~---~g~~~~v~~~L~~~---~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGG-GSviD~ 101 (379)
T TIGR02638 29 FKKALVVTDKDLIK---FGVADKVTDLLDEA---GIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGG-GSPIDT 101 (379)
T ss_pred CCEEEEEcCcchhh---ccchHHHHHHHHHC---CCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHH
Confidence 37888888765422 23455667777653 24444442 1122 34445555555678999999999 777777
Q ss_pred HHHH
Q 025520 122 VNGF 125 (251)
Q Consensus 122 ln~l 125 (251)
...+
T Consensus 102 aKai 105 (379)
T TIGR02638 102 AKAI 105 (379)
T ss_pred HHHH
Confidence 7554
No 151
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=62.87 E-value=81 Score=25.54 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=32.4
Q ss_pred CccEEEEecCCc-cHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHH
Q 025520 80 DCNICESLTSGP-SHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFF 126 (251)
Q Consensus 80 ~~~~~~~~t~~~-~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~ 126 (251)
.+++..+.+... .+..+.++++..+++|.|+..+.+.+...++..+.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~~~~~~ 79 (269)
T cd01391 32 GLEVILADSQSDPERALEALRDLIQQGVDGIIGPPSSSSALAVVELAA 79 (269)
T ss_pred ceEEEEecCCCCHHHHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHH
Confidence 455555555443 35667777888888999999988887766555553
No 152
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=62.18 E-value=82 Score=26.39 Aligned_cols=63 Identities=11% Similarity=0.146 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHhhcC-CCccEEEEecC-CccHHHHHHHHHHHcCCCEEEEEeCCch-HHHHHHHHH
Q 025520 64 KEWKKLLPYLRSRLS-VDCNICESLTS-GPSHAIDITREAIKEGADAVIAVGGDGT-LHEVVNGFF 126 (251)
Q Consensus 64 ~~~~~i~~~L~~~~~-~~~~~~~~~t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGT-l~~vln~l~ 126 (251)
..|.++...++..+. .++++.+..+. ++....+..+++...+.|.|++.+-|.+ ..+.+..+.
T Consensus 12 ~~~~~~~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~ 77 (267)
T cd06322 12 PFYIELANAMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPVDSKGIRAAIAKAK 77 (267)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhhHHHHHHHH
Confidence 344444443333221 23555444443 2334456667777789999999887654 345566654
No 153
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=62.03 E-value=69 Score=30.39 Aligned_cols=76 Identities=16% Similarity=0.248 Sum_probs=52.3
Q ss_pred CCCCCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCC--ccHHHHHHHHHH---H-cCCCEEEEEe
Q 025520 40 AASSSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSG--PSHAIDITREAI---K-EGADAVIAVG 113 (251)
Q Consensus 40 ~~~~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~--~~~a~~~~~~~~---~-~~~d~ivv~G 113 (251)
-|.+.-+++|.||-.|.+ ..+.+++..++.... .+++.++.|.- .+-..++++.+. . ..+|+|||+=
T Consensus 129 kpLP~~p~~IGVITS~tg------AairDIl~~~~rR~P-~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaR 201 (440)
T COG1570 129 KPLPFFPKKIGVITSPTG------AALRDILHTLSRRFP-SVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVAR 201 (440)
T ss_pred CCCCCCCCeEEEEcCCch------HHHHHHHHHHHhhCC-CCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEec
Confidence 344557789999998875 456677888887754 36666666654 334455555443 2 3589999999
Q ss_pred CCchHHHHH
Q 025520 114 GDGTLHEVV 122 (251)
Q Consensus 114 GDGTl~~vl 122 (251)
|=|+|=+..
T Consensus 202 GGGSiEDLW 210 (440)
T COG1570 202 GGGSIEDLW 210 (440)
T ss_pred CcchHHHHh
Confidence 999997654
No 154
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=61.99 E-value=94 Score=25.95 Aligned_cols=58 Identities=9% Similarity=0.110 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhcCCCccEEEEecC-CccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHh
Q 025520 66 WKKLLPYLRSRLSVDCNICESLTS-GPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFS 127 (251)
Q Consensus 66 ~~~i~~~L~~~~~~~~~~~~~~t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~ 127 (251)
++.+...+++. ++++..+.+. ++....++.+.+...++|.|++.+.|..- ..++.+..
T Consensus 18 ~~gi~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~~~~~l~~ 76 (265)
T cd06299 18 ATAIQDAASAA---GYSTIIGNSDENPETENRYLDNLLSQRVDGIIVVPHEQSA-EQLEDLLK 76 (265)
T ss_pred HHHHHHHHHHc---CCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCh-HHHHHHHh
Confidence 33444444432 4555554443 23334455666777789999999887653 45666643
No 155
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=61.95 E-value=30 Score=31.78 Aligned_cols=73 Identities=16% Similarity=0.155 Sum_probs=43.6
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEec---CC-ccHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLT---SG-PSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t---~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
.++++|+..+...+ ...++++...|+.. ++++.++.. +. .+...+.++.+.+.++|.||.+|| |++.++
T Consensus 26 ~~~~lvvt~~~~~~---~g~~~~v~~~L~~~---g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-GS~~D~ 98 (374)
T cd08189 26 VKKVLIVTDKGLVK---LGLLDKVLEALEGA---GIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILAVGG-GSVIDC 98 (374)
T ss_pred CCeEEEEeCcchhh---cccHHHHHHHHHhc---CCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHH
Confidence 36888888765422 23455666677653 233433311 11 223445555555678999999998 777777
Q ss_pred HHHH
Q 025520 122 VNGF 125 (251)
Q Consensus 122 ln~l 125 (251)
...+
T Consensus 99 aK~i 102 (374)
T cd08189 99 AKAI 102 (374)
T ss_pred HHHH
Confidence 7654
No 156
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=60.86 E-value=68 Score=29.35 Aligned_cols=70 Identities=19% Similarity=0.233 Sum_probs=40.6
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEec----CCccHHHHHHHHHHHcCC---CEEEEEeCCchHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLT----SGPSHAIDITREAIKEGA---DAVIAVGGDGTLH 119 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t----~~~~~a~~~~~~~~~~~~---d~ivv~GGDGTl~ 119 (251)
++++||..+.-. ....+.+...|.. ..+.++.. .+.+...++.+.+.+.++ |.||++|| |++.
T Consensus 20 ~r~lIVtD~~v~----~l~~~~l~~~L~~-----~~~~~~~~~e~~k~l~~v~~~~~~~~~~~~~r~d~iIaiGG-Gsv~ 89 (346)
T cd08196 20 ENDVFIVDANVA----ELYRDRLDLPLDA-----APVIAIDATEENKSLEAVSSVIESLRQNGARRNTHLVAIGG-GIIQ 89 (346)
T ss_pred CeEEEEECccHH----HHHHHHHHHHhcC-----CeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-hHHH
Confidence 688888887542 1233334444431 22333321 123455566666666666 78888887 8888
Q ss_pred HHHHHHH
Q 025520 120 EVVNGFF 126 (251)
Q Consensus 120 ~vln~l~ 126 (251)
+++..+.
T Consensus 90 D~ak~vA 96 (346)
T cd08196 90 DVTTFVA 96 (346)
T ss_pred HHHHHHH
Confidence 8877664
No 157
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=60.64 E-value=51 Score=28.96 Aligned_cols=78 Identities=9% Similarity=0.078 Sum_probs=43.6
Q ss_pred CCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 43 SSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 43 ~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
-+..+++.+++||.... +....+.+....++. ++++..+...+..+.....+.+. ++.|.+++ ..|+++..-.
T Consensus 128 ~P~~k~igvl~~~~~~~--~~~~~~~~~~~a~~~---g~~l~~~~v~~~~~~~~~~~~l~-~~~da~~~-~~~~~~~~~~ 200 (294)
T PF04392_consen 128 FPDAKRIGVLYDPSEPN--SVAQIEQLRKAAKKL---GIELVEIPVPSSEDLEQALEALA-EKVDALYL-LPDNLVDSNF 200 (294)
T ss_dssp STT--EEEEEEETT-HH--HHHHHHHHHHHHHHT---T-EEEEEEESSGGGHHHHHHHHC-TT-SEEEE--S-HHHHHTH
T ss_pred CCCCCEEEEEecCCCcc--HHHHHHHHHHHHHHc---CCEEEEEecCcHhHHHHHHHHhh-ccCCEEEE-ECCcchHhHH
Confidence 35678999999987521 223334444444442 35555556666777777666653 46776654 6788888766
Q ss_pred HHHHh
Q 025520 123 NGFFS 127 (251)
Q Consensus 123 n~l~~ 127 (251)
..+..
T Consensus 201 ~~i~~ 205 (294)
T PF04392_consen 201 EAILQ 205 (294)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66553
No 158
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=60.43 E-value=1.8e+02 Score=28.65 Aligned_cols=114 Identities=16% Similarity=0.174 Sum_probs=68.8
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEE-ecCCccHHHHHHHHHHHcCCC-EEEEEeCCchHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICES-LTSGPSHAIDITREAIKEGAD-AVIAVGGDGTLHEVV 122 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~-~t~~~~~a~~~~~~~~~~~~d-~ivv~GGDGTl~~vl 122 (251)
...++.||.=-.|. ....++....|+.. +-.+++.+. .-..+.+..++++++...+.+ .|.++|+++.|--|+
T Consensus 409 ~~~~v~i~~gs~sd----~~~~~~~~~~l~~~-g~~~~~~v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l~~~~ 483 (577)
T PLN02948 409 GTPLVGIIMGSDSD----LPTMKDAAEILDSF-GVPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHLPGMV 483 (577)
T ss_pred CCCeEEEEECchhh----HHHHHHHHHHHHHc-CCCeEEEEECCccCHHHHHHHHHHHHHCCCCEEEEEcCccccchHHH
Confidence 33456666654432 24456666777764 333444442 233567788888888777777 456779999999999
Q ss_pred HHHHhCCcccccccccccCCceEEEecCCChhHHhhhcCCCCCHHHHHHHHHcCceeeeeEEEEEc
Q 025520 123 NGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRSWVDVGVING 188 (251)
Q Consensus 123 n~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~al~~i~~g~~~~iDvg~v~~ 188 (251)
.++. ..|+.-+|..++ .+ +-.++|..+++ -..-+.+..++-
T Consensus 484 a~~t---------------~~pvi~vp~~~~-----~~----~g~~~l~s~~~-~p~g~pv~~v~i 524 (577)
T PLN02948 484 ASMT---------------PLPVIGVPVKTS-----HL----DGLDSLLSIVQ-MPRGVPVATVAI 524 (577)
T ss_pred hhcc---------------CCCEEEcCCCCC-----CC----CcHHHHHHHhc-CCCCCeEEEEec
Confidence 9874 567777788655 22 22345555555 223344666653
No 159
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=60.33 E-value=24 Score=37.87 Aligned_cols=57 Identities=7% Similarity=-0.027 Sum_probs=38.2
Q ss_pred HHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCccccccccc---ccCCceEEEecCCChhHHhh
Q 025520 96 DITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRE---SAHSTALGLIPLGTGSDFAR 158 (251)
Q Consensus 96 ~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~---~~~~~~lgilP~GTgN~fa~ 158 (251)
.+.+.+.+.+.|.+|++|||||+..+.. |.+.-. ... ....+++.-+|.==-||+..
T Consensus 791 ~v~~~L~~~~Id~LVvIGGDgS~t~A~~-Lae~~~-----~~~~~~~~~gi~VIgVPkTIDNDl~~ 850 (1328)
T PTZ00468 791 FLSQLLSFFNMRAIAIVGNSEAATFGAS-LSEQLI-----CMSLNGMKSEIPVVFVPVCLENSISH 850 (1328)
T ss_pred HHHHHHHHcCCCEEEEeCCchHHHHHHH-HHHHHh-----hhccccccCCCcEEEeCccccCCCCC
Confidence 3344455678999999999999986544 322100 000 02468999999888999986
No 160
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=60.31 E-value=1.1e+02 Score=26.42 Aligned_cols=79 Identities=9% Similarity=0.020 Sum_probs=44.3
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEE--EecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICE--SLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~--~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
...+++.+|..+.. .+....+.+...++.. +.++.. .......+....+.++...++|.|++.+.+.....+
T Consensus 131 ~g~~~vail~~~~~---~~~~~~~~~~~~~~~~---G~~v~~~~~~~~~~~d~~~~~~~l~~~~pdaIi~~~~~~~~~~~ 204 (312)
T cd06333 131 RGVKTVAFIGFSDA---YGESGLKELKALAPKY---GIEVVADERYGRTDTSVTAQLLKIRAARPDAVLIWGSGTPAALP 204 (312)
T ss_pred cCCCEEEEEecCcH---HHHHHHHHHHHHHHHc---CCEEEEEEeeCCCCcCHHHHHHHHHhCCCCEEEEecCCcHHHHH
Confidence 35689998876432 2234444555566553 223221 111122345555556655678988887766556678
Q ss_pred HHHHHhC
Q 025520 122 VNGFFSA 128 (251)
Q Consensus 122 ln~l~~~ 128 (251)
++.+.+.
T Consensus 205 ~~~l~~~ 211 (312)
T cd06333 205 AKNLRER 211 (312)
T ss_pred HHHHHHc
Confidence 8888653
No 161
>PRK00536 speE spermidine synthase; Provisional
Probab=60.25 E-value=5.4 Score=35.13 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=14.4
Q ss_pred CEEEEEeCC-chHHHHHHH
Q 025520 107 DAVIAVGGD-GTLHEVVNG 124 (251)
Q Consensus 107 d~ivv~GGD-GTl~~vln~ 124 (251)
+++|+.||| ||+.||+.-
T Consensus 75 ~VLIiGGGDGg~~REvLkh 93 (262)
T PRK00536 75 EVLIVDGFDLELAHQLFKY 93 (262)
T ss_pred eEEEEcCCchHHHHHHHCc
Confidence 588888999 688888763
No 162
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=60.10 E-value=46 Score=26.39 Aligned_cols=47 Identities=21% Similarity=0.296 Sum_probs=25.6
Q ss_pred HHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHc-CCCEEEEEeCCc
Q 025520 69 LLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKE-GADAVIAVGGDG 116 (251)
Q Consensus 69 i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~-~~d~ivv~GGDG 116 (251)
+...|+++. .......+..+++++..+..+++.++ ++|.|+..||=|
T Consensus 25 l~~~l~~~G-~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s 72 (152)
T cd00886 25 LVELLEEAG-HEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTG 72 (152)
T ss_pred HHHHHHHcC-CeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 445566542 12222223444555555555555442 799999999954
No 163
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=60.06 E-value=82 Score=27.07 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=61.8
Q ss_pred CCCCCeEEEEEcCCCC-----CCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHc----CCCEEE---
Q 025520 43 SSRRRDLVFVVNPRGA-----SGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKE----GADAVI--- 110 (251)
Q Consensus 43 ~~~~~~i~vivNP~sg-----~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~----~~d~iv--- 110 (251)
..+++.+.+|+|-..= ...+..-.+.+...|+.. ++++.++.--+..+..+.++++.+. ++|.++
T Consensus 4 ~~~p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~l---gF~V~~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~~ 80 (241)
T smart00115 4 NSKPRGLALIINNENFHSLPRRNGTDVDAENLTELFQSL---GYEVHVKNNLTAEEMLEELKEFAERPEHSDSDSFVCVL 80 (241)
T ss_pred CCCCCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHC---CCEEEEecCCCHHHHHHHHHHHHhccccCCCCEEEEEE
Confidence 3456777888876531 112233345566677663 4666665555666777777777652 455332
Q ss_pred --------EEeCCc---hHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhhc
Q 025520 111 --------AVGGDG---TLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTF 160 (251)
Q Consensus 111 --------v~GGDG---Tl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~l 160 (251)
+.|-|| .|.++++.+-... ......+|-|-+|-+--||.+....
T Consensus 81 ~sHG~~~~l~~~D~~~v~l~~i~~~f~~~~------c~~L~~kPKlffiqACRg~~~~~g~ 135 (241)
T smart00115 81 LSHGEEGGIYGTDHSPLPLDEIFSLFNGDN------CPSLAGKPKLFFIQACRGDELDGGV 135 (241)
T ss_pred cCCCCCCeEEEecCCEEEHHHHHHhccccC------ChhhcCCCcEEEEeCCCCCCCCCCe
Confidence 235566 5556655542110 0112346788999888888765443
No 164
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=60.01 E-value=95 Score=26.84 Aligned_cols=97 Identities=18% Similarity=0.269 Sum_probs=54.7
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcC--CCEEEEEeCCchHHHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEG--ADAVIAVGGDGTLHEVVNG 124 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~--~d~ivv~GGDGTl~~vln~ 124 (251)
.++..++|++.|.|+.-.. --+...|.+. +..+.+++++...+..++.+.....+ .+.+.|.+.| ++. .+..
T Consensus 1 M~vItf~s~KGGaGKTT~~-~~LAs~la~~---G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~-e~~-~l~~ 74 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAA-MALASELAAR---GARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEAD-ELT-ILED 74 (231)
T ss_pred CCeEEEecCCCCCcHHHHH-HHHHHHHHHC---CCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEecc-chh-hHHH
Confidence 3678899999988875322 2233444443 35677789988888888877665433 2345555543 332 2232
Q ss_pred HHhCCcccccccccccCCceEEEecC-CChhHHhh
Q 025520 125 FFSAGKLVTNHNRESAHSTALGLIPL-GTGSDFAR 158 (251)
Q Consensus 125 l~~~~~~~~~~~~~~~~~~~lgilP~-GTgN~fa~ 158 (251)
.+... ......+.++=+ |++|.+..
T Consensus 75 ~~e~a---------~~~~~d~VlvDleG~as~~~~ 100 (231)
T PF07015_consen 75 AYEAA---------EASGFDFVLVDLEGGASELND 100 (231)
T ss_pred HHHHH---------HhcCCCEEEEeCCCCCchhHH
Confidence 32210 112345566655 77766643
No 165
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=59.62 E-value=1.2e+02 Score=26.48 Aligned_cols=79 Identities=13% Similarity=0.098 Sum_probs=41.4
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
.+.+.+.+++.-.. +.-.......+...++. .++++.+..+.. ++...+..+.+...+.|.|++.+.+..-.+.+
T Consensus 58 ~~~~~Igvi~~~~~-~~~~~~~~~~i~~~~~~---~gy~~~i~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~ 133 (327)
T TIGR02417 58 GRSRTIGLVIPDLE-NYSYARIAKELEQQCRE---AGYQLLIACSDDNPDQEKVVIENLLARQVDALIVASCMPPEDAYY 133 (327)
T ss_pred CCCceEEEEeCCCC-CccHHHHHHHHHHHHHH---CCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCChHHH
Confidence 45567888874322 11112223333344443 245555444432 23334555666677899999988765234555
Q ss_pred HHHH
Q 025520 123 NGFF 126 (251)
Q Consensus 123 n~l~ 126 (251)
..|.
T Consensus 134 ~~l~ 137 (327)
T TIGR02417 134 QKLQ 137 (327)
T ss_pred HHHH
Confidence 5554
No 166
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=59.53 E-value=1.1e+02 Score=26.63 Aligned_cols=63 Identities=10% Similarity=0.141 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHhhcC-CCccEEEEecCC-ccHHHHHHHHHHHc--CCCEEEEEeCCchHHHHHHHHH
Q 025520 64 KEWKKLLPYLRSRLS-VDCNICESLTSG-PSHAIDITREAIKE--GADAVIAVGGDGTLHEVVNGFF 126 (251)
Q Consensus 64 ~~~~~i~~~L~~~~~-~~~~~~~~~t~~-~~~a~~~~~~~~~~--~~d~ivv~GGDGTl~~vln~l~ 126 (251)
..|.++...++..+. .++++.+..+.. .....+..+.+... +.|.|++.+.+-...+++..+.
T Consensus 13 ~~~~~~~~gi~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (305)
T cd06324 13 PFWNSVARFMQAAADDLGIELEVLYAERDRFLMLQQARTILQRPDKPDALIFTNEKSVAPELLRLAE 79 (305)
T ss_pred cHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHhccCCCEEEEcCCccchHHHHHHHH
Confidence 445544444433321 235554444432 22334556667777 8999999877655556677664
No 167
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=59.33 E-value=1.3e+02 Score=26.80 Aligned_cols=78 Identities=12% Similarity=0.231 Sum_probs=43.6
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCch-HHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGT-LHEV 121 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGT-l~~v 121 (251)
...++.+++ |.- ....|..+..-++..+. .++++.+..+.. +....+..+.+...+.|.|++.+.+.. +.+.
T Consensus 24 ~~~~Ig~i~-~~~----~~~f~~~~~~gi~~~a~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~~~~~~~~~ 98 (330)
T PRK10355 24 KEVKIGMAI-DDL----RLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNV 98 (330)
T ss_pred CCceEEEEe-cCC----CchHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHH
Confidence 456666666 332 23456555444433221 235555444432 233445566677779999999987754 4566
Q ss_pred HHHHHh
Q 025520 122 VNGFFS 127 (251)
Q Consensus 122 ln~l~~ 127 (251)
++.+..
T Consensus 99 l~~~~~ 104 (330)
T PRK10355 99 IKEAKQ 104 (330)
T ss_pred HHHHHH
Confidence 666643
No 168
>PLN02335 anthranilate synthase
Probab=59.26 E-value=68 Score=27.26 Aligned_cols=66 Identities=15% Similarity=0.187 Sum_probs=41.0
Q ss_pred CCCCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHH
Q 025520 41 ASSSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHE 120 (251)
Q Consensus 41 ~~~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~ 120 (251)
..|...++++||=|-.|- -..+...|+.. +.++.++..+. .+..+ +....+|.||+.||-|..++
T Consensus 13 ~~~~~~~~ilviD~~dsf-------t~~i~~~L~~~---g~~~~v~~~~~-~~~~~----~~~~~~d~iVisgGPg~p~d 77 (222)
T PLN02335 13 NSSKQNGPIIVIDNYDSF-------TYNLCQYMGEL---GCHFEVYRNDE-LTVEE----LKRKNPRGVLISPGPGTPQD 77 (222)
T ss_pred cccCccCcEEEEECCCCH-------HHHHHHHHHHC---CCcEEEEECCC-CCHHH----HHhcCCCEEEEcCCCCChhh
Confidence 347788899999775432 22356667764 34555554322 12222 23346899999999999987
Q ss_pred H
Q 025520 121 V 121 (251)
Q Consensus 121 v 121 (251)
.
T Consensus 78 ~ 78 (222)
T PLN02335 78 S 78 (222)
T ss_pred c
Confidence 4
No 169
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=59.10 E-value=15 Score=31.79 Aligned_cols=53 Identities=25% Similarity=0.414 Sum_probs=36.0
Q ss_pred HHcCCC-EEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhhcCCCCCHHHHHHHHHc
Q 025520 102 IKEGAD-AVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAK 175 (251)
Q Consensus 102 ~~~~~d-~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~al~~i~~ 175 (251)
..++.+ .||++|-||+|-.|+.+|. ++|+.-+|.-+| +|....=..++..+++
T Consensus 169 ~~~~~~~lIVvAGMEGaLPsvvagLv---------------D~PVIavPTsVG------YG~g~gGiaaLltMLq 222 (254)
T COG1691 169 KIEDADVLIVVAGMEGALPSVVAGLV---------------DVPVIAVPTSVG------YGAGGGGIAALLTMLQ 222 (254)
T ss_pred HhhCCCeEEEEcccccchHHHHHhcc---------------CCCeEecccccc------cCcCCccHHHHHHHHH
Confidence 334555 7788999999999999997 478888887664 4444322344544444
No 170
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=59.08 E-value=37 Score=31.26 Aligned_cols=73 Identities=16% Similarity=0.289 Sum_probs=43.0
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEe--cCC--ccHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL--TSG--PSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~--t~~--~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
.++++|+..+...+ ...++++...|+.. +.++.++. ... .++..+.++.+...++|.||.+|| |++-++
T Consensus 28 ~~~~livt~~~~~~---~~~~~~v~~~L~~~---~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-GsviD~ 100 (377)
T cd08188 28 AKKVLLVSDPGVIK---AGWVDRVIESLEEA---GLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVIIAVGG-GSPIDC 100 (377)
T ss_pred CCeEEEEeCcchhh---CccHHHHHHHHHHc---CCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHH
Confidence 37888887754321 12455566677653 23333332 112 233445555555678999999998 777777
Q ss_pred HHHH
Q 025520 122 VNGF 125 (251)
Q Consensus 122 ln~l 125 (251)
...+
T Consensus 101 AK~i 104 (377)
T cd08188 101 AKGI 104 (377)
T ss_pred HHHH
Confidence 7543
No 171
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=58.79 E-value=97 Score=26.26 Aligned_cols=74 Identities=11% Similarity=0.029 Sum_probs=39.0
Q ss_pred eEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecCC---ccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHH
Q 025520 48 DLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSG---PSHAIDITREAIKEGADAVIAVGGDGTLHEVVN 123 (251)
Q Consensus 48 ~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~~---~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln 123 (251)
++.||+.-. ....|.++..-+++.+. .++++.+..+.. .....+..+.+...++|.|++.+.|.+-.+.+.
T Consensus 1 ~Igvi~~~~-----~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiI~~~~~~~~~~~~~ 75 (268)
T cd06306 1 KLCVLYPHL-----KDAYWLSVNYGMVEEAKRLGVSLKLLEAGGYPNLAKQIAQLEDCAAWGADAILLGAVSPDGLNEIL 75 (268)
T ss_pred CeEEEcCCC-----CCHHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHH
Confidence 356666321 13456555544433221 235554443332 223335666777789999999988765433445
Q ss_pred HHH
Q 025520 124 GFF 126 (251)
Q Consensus 124 ~l~ 126 (251)
.+.
T Consensus 76 ~~~ 78 (268)
T cd06306 76 QQV 78 (268)
T ss_pred HHH
Confidence 443
No 172
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=57.99 E-value=89 Score=26.36 Aligned_cols=74 Identities=11% Similarity=0.129 Sum_probs=40.1
Q ss_pred eEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecCC---ccHHHHHHHHHHHcCCCEEEEEeCCch-HHHHH
Q 025520 48 DLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSG---PSHAIDITREAIKEGADAVIAVGGDGT-LHEVV 122 (251)
Q Consensus 48 ~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~~---~~~a~~~~~~~~~~~~d~ivv~GGDGT-l~~vl 122 (251)
++.||+...+ ...|.++...++..+. .++++.+..+.. +....+..+++...+.|.|++.+.+.+ +.+.+
T Consensus 1 ~igvi~~~~~-----~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~ 75 (275)
T cd06320 1 KYGVVLKTLS-----NEFWRSLKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPISDVNLVPAV 75 (275)
T ss_pred CeeEEEecCC-----CHHHHHHHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCCChHHhHHHH
Confidence 4667775332 2344444433333221 235554443332 223345566677778999988877654 56667
Q ss_pred HHHH
Q 025520 123 NGFF 126 (251)
Q Consensus 123 n~l~ 126 (251)
..+.
T Consensus 76 ~~~~ 79 (275)
T cd06320 76 ERAK 79 (275)
T ss_pred HHHH
Confidence 7664
No 173
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=57.87 E-value=37 Score=31.60 Aligned_cols=107 Identities=18% Similarity=0.206 Sum_probs=56.4
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEe--cCCc--cHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL--TSGP--SHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~--t~~~--~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
.++++|+..+... ....++++...|+.. ++++.++. +..| +...+.++.+.+.++|.||.+|| |++-++
T Consensus 49 ~~~~lvv~~~~~~---~~g~~~~v~~~L~~~---gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~IiavGG-GS~iD~ 121 (395)
T PRK15454 49 LKHLFVMADSFLH---QAGMTAGLTRSLAVK---GIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGG-GSVLDA 121 (395)
T ss_pred CCEEEEEcCcchh---hCccHHHHHHHHHHc---CCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEEeCC-hHHHHH
Confidence 3666666554321 124456677778763 34444442 2122 34555566666779999999999 666666
Q ss_pred HHHHH---hCCcc-ccc--ccccccCCceEEEecC--CChhHHhhh
Q 025520 122 VNGFF---SAGKL-VTN--HNRESAHSTALGLIPL--GTGSDFART 159 (251)
Q Consensus 122 ln~l~---~~~~~-~~~--~~~~~~~~~~lgilP~--GTgN~fa~~ 159 (251)
...+. .++.. ... ........+|+..||. |||-...+.
T Consensus 122 AKaia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTtaGTGSE~t~~ 167 (395)
T PRK15454 122 AKAVALLVTNPDSTLAEMSETSVLQPRLPLIAIPTTAGTGSETTNV 167 (395)
T ss_pred HHHHHHHHhCCCccHHHHhcccccCCCCCEEEECCCCcchhhhCCe
Confidence 55432 11100 000 0001123568899996 666555443
No 174
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=57.60 E-value=1.4e+02 Score=26.53 Aligned_cols=80 Identities=8% Similarity=-0.012 Sum_probs=44.3
Q ss_pred CCCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCC-C-ccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCch-
Q 025520 42 SSSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSV-D-CNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGT- 117 (251)
Q Consensus 42 ~~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~-~-~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGT- 117 (251)
.+...+.+.+++.-.+ ..+|.++..-+.+.+.. + +.+....+.. .....+..+.+...+.|.|++++.|..
T Consensus 20 ~~~~~~~Igvv~~~~~-----~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 94 (330)
T PRK15395 20 AAAADTRIGVTIYKYD-----DNFMSVVRKAIEKDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAA 94 (330)
T ss_pred hhcCCceEEEEEecCc-----chHHHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeccCHHH
Confidence 4667788898885332 23444444434333222 1 2332222222 222334556666778999999988865
Q ss_pred HHHHHHHHH
Q 025520 118 LHEVVNGFF 126 (251)
Q Consensus 118 l~~vln~l~ 126 (251)
..+++..+.
T Consensus 95 ~~~~l~~l~ 103 (330)
T PRK15395 95 APTVIEKAR 103 (330)
T ss_pred HHHHHHHHH
Confidence 455666664
No 175
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=56.83 E-value=1.2e+02 Score=26.40 Aligned_cols=79 Identities=10% Similarity=0.124 Sum_probs=53.9
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEE--EEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNIC--ESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~--~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
..+++.+|....+ .+....+.+...++.. +.++. ........+...+++++...+.|.|+.+++-+.+..++
T Consensus 134 g~~~v~iv~~~~~---~g~~~~~~~~~~~~~~---G~~vv~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~~~~~~ 207 (343)
T PF13458_consen 134 GAKKVAIVYPDDP---YGRSLAEAFRKALEAA---GGKVVGEIRYPPGDTDFSALVQQLKSAGPDVVVLAGDPADAAAFL 207 (343)
T ss_dssp TTSEEEEEEESSH---HHHHHHHHHHHHHHHT---TCEEEEEEEE-TTSSHHHHHHHHHHHTTTSEEEEESTHHHHHHHH
T ss_pred CCcEEEEEecCch---hhhHHHHHHHHHHhhc---CceeccceecccccccchHHHHHHhhcCCCEEEEeccchhHHHHH
Confidence 4689999986532 2234445556666664 23332 22334557788888998888999998888888899999
Q ss_pred HHHHhCC
Q 025520 123 NGFFSAG 129 (251)
Q Consensus 123 n~l~~~~ 129 (251)
..+.+.+
T Consensus 208 ~~~~~~~ 214 (343)
T PF13458_consen 208 RQLRQLG 214 (343)
T ss_dssp HHHHHTT
T ss_pred HHHHhhc
Confidence 9987543
No 176
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=56.83 E-value=1.4e+02 Score=26.30 Aligned_cols=79 Identities=8% Similarity=0.011 Sum_probs=51.8
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEE--EEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNIC--ESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~--~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
..+++.+|..... -+...+..+...+++. +.++. ........+....+.++...+.|.|++.|....+..++
T Consensus 134 ~~~~v~ii~~~~~---~g~~~~~~~~~~~~~~---g~~v~~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~~~~~~~~~~~ 207 (340)
T cd06349 134 GFKKVAILSVNTD---WGRTSADIFVKAAEKL---GGQVVAHEEYVPGEKDFRPTITRLRDANPDAIILISYYNDGAPIA 207 (340)
T ss_pred CCcEEEEEecCCh---HhHHHHHHHHHHHHHc---CCEEEEEEEeCCCCCcHHHHHHHHHhcCCCEEEEccccchHHHHH
Confidence 4578888875543 2334455566666653 23332 12222345677888888888999999998888888888
Q ss_pred HHHHhCC
Q 025520 123 NGFFSAG 129 (251)
Q Consensus 123 n~l~~~~ 129 (251)
+.+...+
T Consensus 208 ~~~~~~g 214 (340)
T cd06349 208 RQARAVG 214 (340)
T ss_pred HHHHHcC
Confidence 8887543
No 177
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=56.75 E-value=1.4e+02 Score=26.28 Aligned_cols=77 Identities=10% Similarity=0.068 Sum_probs=50.0
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEE--EecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICE--SLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVN 123 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~--~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln 123 (251)
.+++.++....+. +....+.+...+++. +.++.. .......+...+++++...+.|.|++++.+.-+..++.
T Consensus 141 ~~~v~~v~~~~~~---g~~~~~~~~~~~~~~---g~~v~~~~~~~~~~~d~~~~v~~l~~~~~d~i~~~~~~~~~~~~~~ 214 (345)
T cd06338 141 PKKVAILYADDPF---SQDVAEGAREKAEAA---GLEVVYDETYPPGTADLSPLISKAKAAGPDAVVVAGHFPDAVLLVR 214 (345)
T ss_pred CceEEEEecCCcc---cHHHHHHHHHHHHHc---CCEEEEEeccCCCccchHHHHHHHHhcCCCEEEECCcchhHHHHHH
Confidence 7888888754332 234445555566653 234332 12223356777888888888999999988888888888
Q ss_pred HHHhC
Q 025520 124 GFFSA 128 (251)
Q Consensus 124 ~l~~~ 128 (251)
.+...
T Consensus 215 ~~~~~ 219 (345)
T cd06338 215 QMKEL 219 (345)
T ss_pred HHHHc
Confidence 87653
No 178
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=56.43 E-value=1.2e+02 Score=25.36 Aligned_cols=76 Identities=11% Similarity=0.090 Sum_probs=45.2
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEE--ecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICES--LTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVN 123 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~--~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln 123 (251)
.+++.++..... .+....+.+...++.. +.++... ......+....++++...+.|.|++.+.+.-...++.
T Consensus 135 ~~~i~~v~~~~~---~~~~~~~~~~~~~~~~---g~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~ 208 (298)
T cd06268 135 VKKVAIIYDDYA---YGRGLAAAFREALKKL---GGEVVAEETYPPGATDFSPLIAKLKAAGPDAVFLAGYGGDAALFLK 208 (298)
T ss_pred CCEEEEEEcCCc---hhHHHHHHHHHHHHHc---CCEEEEEeccCCCCccHHHHHHHHHhcCCCEEEEccccchHHHHHH
Confidence 678888886543 1223344455555553 2333211 1222346677777777777888888766566777888
Q ss_pred HHHh
Q 025520 124 GFFS 127 (251)
Q Consensus 124 ~l~~ 127 (251)
.+.+
T Consensus 209 ~~~~ 212 (298)
T cd06268 209 QARE 212 (298)
T ss_pred HHHH
Confidence 7764
No 179
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=56.31 E-value=1.2e+02 Score=25.51 Aligned_cols=65 Identities=14% Similarity=0.098 Sum_probs=34.5
Q ss_pred eEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCC
Q 025520 48 DLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGD 115 (251)
Q Consensus 48 ~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGD 115 (251)
|+.||+.. . ......|..+..-+.+.+. .++++.+..+.+++...+..+.+...+.|.|++.+.+
T Consensus 1 ~Igvi~~~-~--~~~~~f~~~l~~gi~~~~~~~gy~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~ 66 (260)
T cd06304 1 KVALVYDG-G--GGDKSFNQSAYEGLEKAEKELGVEVKYVESVEDADYEPNLRQLAAQGYDLIFGVGFG 66 (260)
T ss_pred CEEEEecC-C--CCcchHHHHHHHHHHHHHHhcCceEEEEecCCHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 46666642 1 0112445544443333221 2355544444334444566667777789999998766
No 180
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=56.26 E-value=1e+02 Score=24.61 Aligned_cols=87 Identities=21% Similarity=0.176 Sum_probs=51.2
Q ss_pred EEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCce---EEEecCCCh-----h
Q 025520 83 ICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTA---LGLIPLGTG-----S 154 (251)
Q Consensus 83 ~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~---lgilP~GTg-----N 154 (251)
++++.+.....-.++++.+.++..|+|++++=||-=.+.+-.+++.-. .....++. =|+||.+.- .
T Consensus 41 feVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lr------e~G~~~i~v~~GGvip~~d~~~l~~~ 114 (143)
T COG2185 41 FEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALR------EAGVEDILVVVGGVIPPGDYQELKEM 114 (143)
T ss_pred ceEEecCCcCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHH------HhCCcceEEeecCccCchhHHHHHHh
Confidence 344555555555777888888899999999999876666555553210 01122222 256777752 2
Q ss_pred HHhhhcCCCCCHHHHHHHHHc
Q 025520 155 DFARTFGWRNDPYEAVERIAK 175 (251)
Q Consensus 155 ~fa~~lg~~~~~~~al~~i~~ 175 (251)
.+++-++-..+..+++..++.
T Consensus 115 G~~~if~pgt~~~~~~~~v~~ 135 (143)
T COG2185 115 GVDRIFGPGTPIEEALSDLLT 135 (143)
T ss_pred CcceeeCCCCCHHHHHHHHHH
Confidence 334445544566676666554
No 181
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=56.17 E-value=67 Score=26.07 Aligned_cols=66 Identities=18% Similarity=0.256 Sum_probs=39.7
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNG 124 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~ 124 (251)
..+++.++-.+..-.+ +..+...| + .++..+.-+++++....++++..+++|+|| || +++.+.+..
T Consensus 76 ~~~~Iavv~~~~~~~~-----~~~~~~ll----~--~~i~~~~~~~~~e~~~~i~~~~~~G~~viV--Gg-~~~~~~A~~ 141 (176)
T PF06506_consen 76 YGPKIAVVGYPNIIPG-----LESIEELL----G--VDIKIYPYDSEEEIEAAIKQAKAEGVDVIV--GG-GVVCRLARK 141 (176)
T ss_dssp CTSEEEEEEESS-SCC-----HHHHHHHH----T---EEEEEEESSHHHHHHHHHHHHHTT--EEE--ES-HHHHHHHHH
T ss_pred cCCcEEEEecccccHH-----HHHHHHHh----C--CceEEEEECCHHHHHHHHHHHHHcCCcEEE--CC-HHHHHHHHH
Confidence 3478888887765322 22233333 2 355556667888999999999999998877 44 455555543
No 182
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=55.85 E-value=1.2e+02 Score=26.50 Aligned_cols=78 Identities=14% Similarity=0.029 Sum_probs=49.2
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEE--EEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNIC--ESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~--~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
..+++.++.+..+ . ++...+.+...+++. +.++. ........+...++.++.+.++|.|++++...-...++
T Consensus 133 ~~~~v~~l~~~~~-~--g~~~~~~~~~~~~~~---G~~v~~~~~~~~~~~d~~~~v~~~~~~~pd~v~~~~~~~~~~~~~ 206 (336)
T cd06360 133 GYKKVVTVAWDYA-F--GYEVVEGFKEAFTEA---GGKIVKELWVPFGTSDFASYLAQIPDDVPDAVFVFFAGGDAIKFV 206 (336)
T ss_pred CCCeEEEEeccch-h--hHHHHHHHHHHHHHc---CCEEEEEEecCCCCcchHHHHHHHHhcCCCEEEEecccccHHHHH
Confidence 3678888886443 2 233444455666653 23332 22333456778888888888999999877666666777
Q ss_pred HHHHhC
Q 025520 123 NGFFSA 128 (251)
Q Consensus 123 n~l~~~ 128 (251)
+.+...
T Consensus 207 ~~~~~~ 212 (336)
T cd06360 207 KQYDAA 212 (336)
T ss_pred HHHHHc
Confidence 777643
No 183
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=55.77 E-value=17 Score=29.37 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=23.4
Q ss_pred CCC-EEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecC
Q 025520 105 GAD-AVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPL 150 (251)
Q Consensus 105 ~~d-~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~ 150 (251)
..| .|++-||=||+.|+...+. .+.|+.+++.
T Consensus 91 ~sda~IvlpGG~GTL~E~~~a~~--------------~~kpv~~l~~ 123 (159)
T TIGR00725 91 SADVVVSVGGGYGTAIEILGAYA--------------LGGPVVVLRG 123 (159)
T ss_pred HCCEEEEcCCchhHHHHHHHHHH--------------cCCCEEEEEC
Confidence 345 5666789999999999874 3467777763
No 184
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=55.59 E-value=1.5e+02 Score=26.20 Aligned_cols=79 Identities=10% Similarity=0.093 Sum_probs=48.9
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEE--EEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNIC--ESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~--~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
..+++.+|+..... -+....+.+...+++. +.++. ........+...++.++.+.+.|.|++.+..+....++
T Consensus 135 ~~~~v~~l~~~~~~--~g~~~~~~~~~~~~~~---g~~v~~~~~~~~~~~d~~~~v~~i~~~~~d~vi~~~~~~~~~~~~ 209 (344)
T cd06348 135 GIKRVAVFYAQDDA--FSVSETEIFQKALRDQ---GLNLVTVQTFQTGDTDFQAQITAVLNSKPDLIVISALAADGGNLV 209 (344)
T ss_pred CCeEEEEEEeCCch--HHHHHHHHHHHHHHHc---CCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEECCcchhHHHHH
Confidence 56889888743221 1233344455566653 23332 12222345777888888888999988887776777788
Q ss_pred HHHHhC
Q 025520 123 NGFFSA 128 (251)
Q Consensus 123 n~l~~~ 128 (251)
+.+...
T Consensus 210 ~~~~~~ 215 (344)
T cd06348 210 RQLREL 215 (344)
T ss_pred HHHHHc
Confidence 887654
No 185
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=55.42 E-value=1.2e+02 Score=26.01 Aligned_cols=33 Identities=12% Similarity=0.126 Sum_probs=22.9
Q ss_pred HHHHHHHHHcCCCEEEEEeCCch-HHHHHHHHHh
Q 025520 95 IDITREAIKEGADAVIAVGGDGT-LHEVVNGFFS 127 (251)
Q Consensus 95 ~~~~~~~~~~~~d~ivv~GGDGT-l~~vln~l~~ 127 (251)
.+..+.+...++|.|++.+-|-. ..+.++.+..
T Consensus 46 ~~~l~~~~~~~~dgiii~~~~~~~~~~~i~~~~~ 79 (294)
T cd06316 46 VADIETTISQKPDIIISIPVDPVSTAAAYKKVAE 79 (294)
T ss_pred HHHHHHHHHhCCCEEEEcCCCchhhhHHHHHHHH
Confidence 35555666778999999887754 3566777653
No 186
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=55.35 E-value=1.2e+02 Score=26.76 Aligned_cols=80 Identities=10% Similarity=0.115 Sum_probs=51.0
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEE--ecCC--ccHHHHHHHHHHHcCCCEEEEEeCCchHH
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICES--LTSG--PSHAIDITREAIKEGADAVIAVGGDGTLH 119 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~--~t~~--~~~a~~~~~~~~~~~~d~ivv~GGDGTl~ 119 (251)
...+++.+|+.... -+ ...++.+...+++. +.++... .... ..+....++++...+.|+|++++......
T Consensus 133 ~~~~~v~ii~~~~~-~g--~~~~~~~~~~~~~~---g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~dvvi~~~~~~~~~ 206 (350)
T cd06366 133 FGWRRVATIYEDDD-YG--SGGLPDLVDALQEA---GIEISYRAAFPPSANDDDITDALKKLKEKDSRVIVVHFSPDLAR 206 (350)
T ss_pred CCCcEEEEEEEcCc-cc--chhHHHHHHHHHHc---CCEEEEEeccCCCCChhHHHHHHHHHhcCCCeEEEEECChHHHH
Confidence 35688888885443 12 23445556666654 2333221 2221 34677778888777899999999988888
Q ss_pred HHHHHHHhCC
Q 025520 120 EVVNGFFSAG 129 (251)
Q Consensus 120 ~vln~l~~~~ 129 (251)
.++..+...+
T Consensus 207 ~~~~~a~~~g 216 (350)
T cd06366 207 RVFCEAYKLG 216 (350)
T ss_pred HHHHHHHHcC
Confidence 8888887543
No 187
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=55.26 E-value=74 Score=25.67 Aligned_cols=41 Identities=15% Similarity=0.236 Sum_probs=24.6
Q ss_pred EecCCccHHHHHHHHHHH-cCCCEEEEEeCCc-----hHHHHHHHHH
Q 025520 86 SLTSGPSHAIDITREAIK-EGADAVIAVGGDG-----TLHEVVNGFF 126 (251)
Q Consensus 86 ~~t~~~~~a~~~~~~~~~-~~~d~ivv~GGDG-----Tl~~vln~l~ 126 (251)
+..++.+...+..+++.+ +++|+|++.||=| -..+++..++
T Consensus 43 iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~~D~t~eal~~l~ 89 (163)
T TIGR02667 43 IVKDDIYQIRAQVSAWIADPDVQVILITGGTGFTGRDVTPEALEPLF 89 (163)
T ss_pred EcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCCcHHHHHHHH
Confidence 344455555555555543 5799999999954 2344555554
No 188
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=55.18 E-value=1.1e+02 Score=25.15 Aligned_cols=46 Identities=7% Similarity=0.028 Sum_probs=30.2
Q ss_pred CccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHH
Q 025520 80 DCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFF 126 (251)
Q Consensus 80 ~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~ 126 (251)
++++.+..... +....+.++++...++|.|++.+.|.+... +..+.
T Consensus 29 g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~~~~~~-~~~~~ 75 (264)
T cd06267 29 GYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPSRLDDEL-LEELA 75 (264)
T ss_pred CCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCCcchHH-HHHHH
Confidence 35554443332 233556677777789999999999988766 55554
No 189
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=54.12 E-value=30 Score=27.95 Aligned_cols=47 Identities=28% Similarity=0.439 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCC
Q 025520 93 HAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGT 152 (251)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GT 152 (251)
.+.++.+.+.+.+. .|+..|+.|--..+..+.++.+ ...+|++|.+-
T Consensus 19 ~A~~lg~~La~~g~-~lv~Gg~~GlM~a~a~ga~~~g------------g~viGVlp~~l 65 (159)
T TIGR00725 19 IAYRLGKELAKKGH-ILINGGRTGVMEAVSKGAREAG------------GLVVGILPDED 65 (159)
T ss_pred HHHHHHHHHHHCCC-EEEcCCchhHHHHHHHHHHHCC------------CeEEEECChhh
Confidence 45666777777665 4444555777777777776533 56799999754
No 190
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=54.11 E-value=1.2e+02 Score=25.24 Aligned_cols=59 Identities=12% Similarity=0.059 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhcCCCccEEEEecC-CccHHHHHHHHHHHcCCCEEEEEeCCch-HHHHHHHHH
Q 025520 65 EWKKLLPYLRSRLSVDCNICESLTS-GPSHAIDITREAIKEGADAVIAVGGDGT-LHEVVNGFF 126 (251)
Q Consensus 65 ~~~~i~~~L~~~~~~~~~~~~~~t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGT-l~~vln~l~ 126 (251)
.++.+...++.. ++++.+..+. ++....+..+++...++|.|++.+-+.. ..+.+..+.
T Consensus 17 ~~~~i~~~~~~~---g~~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~~~~~~~~~~l~~l~ 77 (268)
T cd06323 17 LKDGAQKEAKEL---GYELTVLDAQNDAAKQLNDIEDLITRGVDAIIINPTDSDAVVPAVKAAN 77 (268)
T ss_pred HHHHHHHHHHHc---CceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHH
Confidence 334444555543 3555444443 2334456677777778999888764433 235566554
No 191
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=54.06 E-value=1.4e+02 Score=25.85 Aligned_cols=73 Identities=8% Similarity=0.029 Sum_probs=38.0
Q ss_pred eEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecC---CccHHHHHHHHHHHcCCCEEEEEeCCchH-HHHH
Q 025520 48 DLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTS---GPSHAIDITREAIKEGADAVIAVGGDGTL-HEVV 122 (251)
Q Consensus 48 ~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~---~~~~a~~~~~~~~~~~~d~ivv~GGDGTl-~~vl 122 (251)
++.||+. ... ...|..+...+..... .++++.+..+. +.....+..+.+...++|.|++.+.|.+. .+.+
T Consensus 1 ~igvvvp-~~~----n~f~~~~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l 75 (295)
T TIGR02955 1 KLCALYP-HLK----DSYWLSINYGMVEQAKHLGVELKVLEAGGYPNLDKQLAQIEQCKSWGADAILLGTVSPEALNHDL 75 (295)
T ss_pred CeeEEec-CCC----cHHHHHHHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhhhHHH
Confidence 3566663 221 2445554443333221 23555444333 22344456677778899999998876432 3444
Q ss_pred HHH
Q 025520 123 NGF 125 (251)
Q Consensus 123 n~l 125 (251)
..+
T Consensus 76 ~~~ 78 (295)
T TIGR02955 76 AQL 78 (295)
T ss_pred HHH
Confidence 443
No 192
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=53.91 E-value=1.1e+02 Score=27.27 Aligned_cols=75 Identities=19% Similarity=0.256 Sum_probs=47.4
Q ss_pred CCCCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCc--cHHHHHHHH---HHHc----CCCEEEE
Q 025520 41 ASSSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGP--SHAIDITRE---AIKE----GADAVIA 111 (251)
Q Consensus 41 ~~~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~--~~a~~~~~~---~~~~----~~d~ivv 111 (251)
+.+.-+++|.||-.|.+ ..+..++..++.... .+++.++.+.-. +-+.++++. +... .+|+||+
T Consensus 9 ~lP~~p~~I~vITs~~g------Aa~~D~~~~~~~r~~-~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii 81 (319)
T PF02601_consen 9 PLPKFPKRIAVITSPTG------AAIQDFLRTLKRRNP-IVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIII 81 (319)
T ss_pred CCCCCCCEEEEEeCCch------HHHHHHHHHHHHhCC-CcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEE
Confidence 44567789999999875 234556666766543 356666655532 333444443 3333 4899999
Q ss_pred EeCCchHHHHH
Q 025520 112 VGGDGTLHEVV 122 (251)
Q Consensus 112 ~GGDGTl~~vl 122 (251)
+=|=|++-+..
T Consensus 82 ~RGGGs~eDL~ 92 (319)
T PF02601_consen 82 IRGGGSIEDLW 92 (319)
T ss_pred ecCCCChHHhc
Confidence 99999987543
No 193
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=53.79 E-value=1.3e+02 Score=25.11 Aligned_cols=73 Identities=12% Similarity=0.034 Sum_probs=38.6
Q ss_pred EEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCcc-HHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHH
Q 025520 49 LVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPS-HAIDITREAIKEGADAVIAVGGDGTLHEVVNGFF 126 (251)
Q Consensus 49 i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~-~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~ 126 (251)
+.|++ |...+.-....++.++..+++. ++++.+..+.... ...++.+.+...++|.|++...|-+ ...+..+.
T Consensus 2 i~vi~-~~~~~~~~~~~~~gi~~~~~~~---g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~~-~~~~~~~~ 75 (270)
T cd06296 2 IGLVF-PDLDSPWASEVLRGVEEAAAAA---GYDVVLSESGRRTSPERQWVERLSARRTDGVILVTPELT-SAQRAALR 75 (270)
T ss_pred eEEEE-CCCCCccHHHHHHHHHHHHHHc---CCeEEEecCCCchHHHHHHHHHHHHcCCCEEEEecCCCC-hHHHHHHh
Confidence 44555 4433222233344444455442 3555544444322 3335566777778999999887744 23455553
No 194
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=53.30 E-value=50 Score=28.27 Aligned_cols=57 Identities=23% Similarity=0.270 Sum_probs=38.2
Q ss_pred cCCccHHHHHHHHHHHcCCCEEEEEeCCch---HHHHHHHHHhCCcccccccccccCCceEEEecCCChhH
Q 025520 88 TSGPSHAIDITREAIKEGADAVIAVGGDGT---LHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSD 155 (251)
Q Consensus 88 t~~~~~a~~~~~~~~~~~~d~ivv~GGDGT---l~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~ 155 (251)
.....+..++.+.+...+.|.|+|.|=||. +.+++..+.+.. ..+|+.+.|....+.
T Consensus 8 P~K~~~~~~~~~~~~~~gtdai~vGGS~~v~~~~~~~~~~ik~~~-----------~~~Pvilfp~~~~~i 67 (219)
T cd02812 8 PDKELVDEEIAKLAEESGTDAIMVGGSDGVSSTLDNVVRLIKRIR-----------RPVPVILFPSNPEAV 67 (219)
T ss_pred CCCCCCHHHHHHHHHhcCCCEEEECCccchhhhHHHHHHHHHHhc-----------CCCCEEEeCCCcccc
Confidence 333334455555555578999999999975 666776664311 158999999888654
No 195
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=53.24 E-value=32 Score=28.40 Aligned_cols=46 Identities=24% Similarity=0.397 Sum_probs=30.7
Q ss_pred cHHHHHHHHHHHcCCCEEEEEeC--CchHHHHHHHHHhCCcccccccccccCCceEEEecCC
Q 025520 92 SHAIDITREAIKEGADAVIAVGG--DGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLG 151 (251)
Q Consensus 92 ~~a~~~~~~~~~~~~d~ivv~GG--DGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~G 151 (251)
..+.++.+.+.+.++ .+|.|| .|....+..+..+.+ ...+|++|-.
T Consensus 19 ~~A~~lG~~la~~g~--~lV~GGg~~GlM~a~a~ga~~~g------------G~viGi~p~~ 66 (178)
T TIGR00730 19 ELAAELGAYLAGQGW--GLVYGGGRVGLMGAIADAAMENG------------GTAVGVNPSG 66 (178)
T ss_pred HHHHHHHHHHHHCCC--EEEECCChHhHHHHHHHHHHhcC------------CeEEEecchh
Confidence 355666677766543 445554 688888888887543 4678998864
No 196
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=52.65 E-value=67 Score=27.75 Aligned_cols=60 Identities=25% Similarity=0.289 Sum_probs=37.0
Q ss_pred EEecCCccHHHHHHHHHHHcCCCEEEEEeCC-c-hHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhh
Q 025520 85 ESLTSGPSHAIDITREAIKEGADAVIAVGGD-G-TLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFAR 158 (251)
Q Consensus 85 ~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGD-G-Tl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~ 158 (251)
.++.... ...+..+.+...+.|.|+|.|=| + |+.+++..+.+ ...+|+.+.|.+.. .++.
T Consensus 13 liDPdK~-~~~~~~~~~~~~gtDai~VGGS~~~~~~d~vv~~ik~------------~~~lPvilfPg~~~-~vs~ 74 (230)
T PF01884_consen 13 LIDPDKP-NPEEALEAACESGTDAIIVGGSDTGVTLDNVVALIKR------------VTDLPVILFPGSPS-QVSP 74 (230)
T ss_dssp EE-TTSS--HHHHHHHHHCTT-SEEEEE-STHCHHHHHHHHHHHH------------HSSS-EEEETSTCC-G--T
T ss_pred EECCCCC-CcHHHHHHHHhcCCCEEEECCCCCccchHHHHHHHHh------------cCCCCEEEeCCChh-hcCc
Confidence 3444443 23444555667899999999998 5 77888887753 36899999998774 4443
No 197
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=52.30 E-value=1.5e+02 Score=25.77 Aligned_cols=65 Identities=15% Similarity=0.258 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHhhcCC-CccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCch-HHHHHHHHHh
Q 025520 63 GKEWKKLLPYLRSRLSV-DCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGT-LHEVVNGFFS 127 (251)
Q Consensus 63 ~~~~~~i~~~L~~~~~~-~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGT-l~~vln~l~~ 127 (251)
...|..+...+++.... ++++.+..+.. +....+..+.+...+.|.|++.+-|.. +...+..+..
T Consensus 10 ~~~~~~~~~~i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~~~~~~~~~~l~~~~~ 77 (302)
T TIGR02634 10 LERWQKDRDIFVAAAESLGAKVFVQSANGNEAKQISQIENLIARGVDVLVIIPQNGQVLSNAVQEAKD 77 (302)
T ss_pred hhhHHHHHHHHHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHH
Confidence 35566555544443321 34544333321 222335566677788999999998865 4667776653
No 198
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=51.89 E-value=1.4e+02 Score=24.79 Aligned_cols=57 Identities=16% Similarity=0.097 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhcCCCccEEEEecC-CccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHH
Q 025520 66 WKKLLPYLRSRLSVDCNICESLTS-GPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFF 126 (251)
Q Consensus 66 ~~~i~~~L~~~~~~~~~~~~~~t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~ 126 (251)
.+.+...++.. ++++.+..+. ++....+..+++...++|.|++.+.+.+ ..++..+.
T Consensus 18 ~~gi~~~~~~~---g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~~~~~-~~~~~~~~ 75 (259)
T cd01542 18 VKGILAALYEN---GYQMLLMNTNFSIEKEIEALELLARQKVDGIILLATTIT-DEHREAIK 75 (259)
T ss_pred HHHHHHHHHHC---CCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHHHh
Confidence 33444444442 3555554443 3344456677777889999999987754 24555553
No 199
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=51.79 E-value=1.3e+02 Score=25.72 Aligned_cols=108 Identities=17% Similarity=0.197 Sum_probs=57.2
Q ss_pred CCCCCeEEEEEcCCC------CCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHH---cCCC-EEEEE
Q 025520 43 SSRRRDLVFVVNPRG------ASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIK---EGAD-AVIAV 112 (251)
Q Consensus 43 ~~~~~~i~vivNP~s------g~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~---~~~d-~ivv~ 112 (251)
..+.+++.+|+|-.. ....+..-.+.+...|+.. ++++.++.--+..+..+.++++.+ ..+| .+++.
T Consensus 5 ~~~~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~l---gF~V~~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~~ 81 (243)
T cd00032 5 NSKRRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESL---GYEVEVKNNLTAEEILEELKEFASPDHSDSDSFVCVI 81 (243)
T ss_pred CCCCCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHC---CCEEEEeCCCCHHHHHHHHHHHHhccCCCCCeeEEEE
Confidence 344666667765532 1222233345566677764 466665555556677777777764 2444 23333
Q ss_pred eCCc-------------hHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhh
Q 025520 113 GGDG-------------TLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFART 159 (251)
Q Consensus 113 GGDG-------------Tl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~ 159 (251)
=|-| .|.++++.+-... -.....++-|-+|-+--+|.+...
T Consensus 82 ~sHG~~~~l~~~D~~~v~l~~i~~~f~~~~------~~sl~~kPKl~~iqACRg~~~~~~ 135 (243)
T cd00032 82 LSHGEEGGIYGTDGDVVPIDEITSLFNGDN------CPSLAGKPKLFFIQACRGDELDLG 135 (243)
T ss_pred CCCCCCCEEEEecCcEEEHHHHHHhhccCC------CccccCCCcEEEEECCCCCcCCCc
Confidence 3333 2344444332100 011234677899999888888654
No 200
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=51.79 E-value=47 Score=26.25 Aligned_cols=45 Identities=24% Similarity=0.223 Sum_probs=23.0
Q ss_pred HHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCch
Q 025520 67 KKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGT 117 (251)
Q Consensus 67 ~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGT 117 (251)
+++.+.+++. ++++..+......+ .++.+.+. +.|.|++.|||=.
T Consensus 3 ~~~~~~f~~~---g~~v~~l~~~~~~~-~~~~~~i~--~ad~I~~~GG~~~ 47 (154)
T PF03575_consen 3 EKFRKAFRKL---GFEVDQLDLSDRND-ADILEAIR--EADAIFLGGGDTF 47 (154)
T ss_dssp HHHHHHHHHC---T-EEEECCCTSCGH-HHHHHHHH--HSSEEEE--S-HH
T ss_pred HHHHHHHHHC---CCEEEEEeccCCCh-HHHHHHHH--hCCEEEECCCCHH
Confidence 4455667764 35555444444333 34444443 5899999999943
No 201
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=51.09 E-value=1.5e+02 Score=24.85 Aligned_cols=47 Identities=11% Similarity=0.045 Sum_probs=28.9
Q ss_pred CccEEEEecC-CccHHHHHHHHHHHcCCCEEEEEeCCch-HHHHHHHHH
Q 025520 80 DCNICESLTS-GPSHAIDITREAIKEGADAVIAVGGDGT-LHEVVNGFF 126 (251)
Q Consensus 80 ~~~~~~~~t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGT-l~~vln~l~ 126 (251)
++++.+..+. ++....+..+.+...+.|.|++.+.|-+ ..+.+..+.
T Consensus 30 g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~l~~~~ 78 (275)
T cd06317 30 GVEVIVLDANGDVARQAAQVEDLIAQKVDGIILWPTDGQAYIPGLRKAK 78 (275)
T ss_pred CCEEEEEcCCcCHHHHHHHHHHHHHcCCCEEEEecCCccccHHHHHHHH
Confidence 4565554443 2233445566666778999999887753 456666664
No 202
>PRK15138 aldehyde reductase; Provisional
Probab=51.08 E-value=40 Score=31.22 Aligned_cols=71 Identities=13% Similarity=0.150 Sum_probs=40.6
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEe--cCC--ccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL--TSG--PSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~--t~~--~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
++++|+..+.+-. ....++++...|+ +.++.++. ..+ .++..+.++.+.+.++|.||.+|| |++-++.
T Consensus 30 ~~~livt~~~~~~--~~g~~~~v~~~L~-----~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~A 101 (387)
T PRK15138 30 ARVLITYGGGSVK--KTGVLDQVLDALK-----GMDVLEFGGIEPNPTYETLMKAVKLVREEKITFLLAVGG-GSVLDGT 101 (387)
T ss_pred CeEEEECCCchHH--hcCcHHHHHHHhc-----CCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC-hHHHHHH
Confidence 7888887655421 1233445555553 23333332 112 234555555666678999999999 6666666
Q ss_pred HHH
Q 025520 123 NGF 125 (251)
Q Consensus 123 n~l 125 (251)
..+
T Consensus 102 K~i 104 (387)
T PRK15138 102 KFI 104 (387)
T ss_pred HHH
Confidence 654
No 203
>PTZ00287 6-phosphofructokinase; Provisional
Probab=50.99 E-value=26 Score=37.92 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=38.9
Q ss_pred cHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHh
Q 025520 92 SHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA 157 (251)
Q Consensus 92 ~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa 157 (251)
++..++++.+.+.+.|.+|++|||||...+.. |.+.. ......+.+..+|.==-||+.
T Consensus 258 e~~~ki~e~lkkl~Id~LViIGGddS~~~A~~-Lae~~-------~~~gi~i~VIGIPKTIDNDL~ 315 (1419)
T PTZ00287 258 DDLIAIENIVAKLKLNGLVIIGGDGSNSNAAL-ISEYF-------AERQIPISIIGIPKTIDGDLK 315 (1419)
T ss_pred HHHHHHHHHHHHcCCCEEEEECChhHHHHHHH-HHHHH-------HhcCCCeeEEEEeeeecCCCC
Confidence 35555666666779999999999999987754 32210 001223446778988789998
No 204
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=50.88 E-value=1.9e+02 Score=26.02 Aligned_cols=78 Identities=13% Similarity=0.089 Sum_probs=49.2
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEE--EecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICE--SLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~--~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
..+++.+|.+-.. -+ ....+.+...++.. +.++.. .......+....+.++...++|.|++.+-......++
T Consensus 139 ~~~kvaiv~~~~~-~g--~~~~~~~~~~~~~~---G~~vv~~~~~~~~~~D~~~~v~~i~~~~pd~V~~~~~~~~~~~~~ 212 (351)
T cd06334 139 KGKKIALVYHDSP-FG--KEPIEALKALAEKL---GFEVVLEPVPPPGPNDQKAQWLQIRRSGPDYVILWGWGVMNPVAI 212 (351)
T ss_pred CCCeEEEEeCCCc-cc--hhhHHHHHHHHHHc---CCeeeeeccCCCCcccHHHHHHHHHHcCCCEEEEecccchHHHHH
Confidence 4688988876433 22 23344455566653 233322 2222335777778888888999999887777777888
Q ss_pred HHHHhC
Q 025520 123 NGFFSA 128 (251)
Q Consensus 123 n~l~~~ 128 (251)
..+...
T Consensus 213 ~~~~~~ 218 (351)
T cd06334 213 KEAKRV 218 (351)
T ss_pred HHHHHc
Confidence 888654
No 205
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=50.78 E-value=1.5e+02 Score=24.76 Aligned_cols=74 Identities=12% Similarity=0.021 Sum_probs=37.7
Q ss_pred EEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCcc--HHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHH
Q 025520 49 LVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPS--HAIDITREAIKEGADAVIAVGGDGTLHEVVNGFF 126 (251)
Q Consensus 49 i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~--~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~ 126 (251)
+.||+. ...+.-....++.+...+++. ++++.+..+.... ...++.+.+...++|.|++...+....+.++.+.
T Consensus 2 I~vi~~-~~~~~~~~~~~~gi~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~ 77 (270)
T cd01545 2 IGLLYD-NPSPGYVSEIQLGALDACRDT---GYQLVIEPCDSGSPDLAERVRALLQRSRVDGVILTPPLSDNPELLDLLD 77 (270)
T ss_pred EEEEEc-CCCcccHHHHHHHHHHHHHhC---CCeEEEEeCCCCchHHHHHHHHHHHHCCCCEEEEeCCCCCccHHHHHHH
Confidence 455663 222222234444455555542 3555544343222 2333334455678999999988753345566554
No 206
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=50.58 E-value=1.1e+02 Score=25.52 Aligned_cols=63 Identities=16% Similarity=0.247 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhhcCC-CccEEEE-ecC-CccHHHHHHHHHHHcCCCEEEEEeCCc-hHHHHHHHHHh
Q 025520 65 EWKKLLPYLRSRLSV-DCNICES-LTS-GPSHAIDITREAIKEGADAVIAVGGDG-TLHEVVNGFFS 127 (251)
Q Consensus 65 ~~~~i~~~L~~~~~~-~~~~~~~-~t~-~~~~a~~~~~~~~~~~~d~ivv~GGDG-Tl~~vln~l~~ 127 (251)
+|..+..-+++.+.. +.++.+. ... +.....+.++++...++|.|++..-|. .+..+++.+..
T Consensus 12 ~~~~~~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~ 78 (257)
T PF13407_consen 12 FWQQVIKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKA 78 (257)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhh
Confidence 555544444333211 2444432 222 233444566777788999999998887 46788888764
No 207
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=50.35 E-value=46 Score=25.82 Aligned_cols=70 Identities=19% Similarity=0.278 Sum_probs=46.2
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEE
Q 025520 38 HGAASSSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAV 112 (251)
Q Consensus 38 ~~~~~~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~ 112 (251)
.+++...+..++-+=+-|.||.++- .-..+++..|.. ..+++. +.|+.|+-+..+-++....+..+|+=-
T Consensus 36 ITsAkRD~~g~Lql~i~pasGrrkL-spt~emi~~l~~---geIel~-VLttqpDIai~l~~kVldnEnRYViDF 105 (144)
T PF10657_consen 36 ITSAKRDRYGKLQLTISPASGRRKL-SPTPEMIDKLIS---GEIELF-VLTTQPDIAINLQQKVLDNENRYVIDF 105 (144)
T ss_pred EeeeecccCCceEEEEecCCCcccc-CCcHHHHHHHhc---CceEEE-EEccCCCeeechhhhhhcccceEEEec
Confidence 4455677888999999999987653 223444444443 234544 467788888888888776666666643
No 208
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=49.81 E-value=1.6e+02 Score=24.78 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhcCCCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHH
Q 025520 65 EWKKLLPYLRSRLSVDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFF 126 (251)
Q Consensus 65 ~~~~i~~~L~~~~~~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~ 126 (251)
..+.++..+++. ++++.+..+.. ++...+..+.+...+.|.|++.+++.....++..+.
T Consensus 17 ~~~~i~~~a~~~---g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~~ 76 (269)
T cd06281 17 LFSGAEDRLRAA---GYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPGDERDPELVDALA 76 (269)
T ss_pred HHHHHHHHHHHc---CCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHHH
Confidence 334444555542 35554444433 333445566677778999999887643344555443
No 209
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=49.49 E-value=1.6e+02 Score=24.84 Aligned_cols=59 Identities=7% Similarity=-0.037 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHH-HHHcCCCEEEEEeCCchHHHHHHHHH
Q 025520 64 KEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITRE-AIKEGADAVIAVGGDGTLHEVVNGFF 126 (251)
Q Consensus 64 ~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~-~~~~~~d~ivv~GGDGTl~~vln~l~ 126 (251)
..++.++..+++. ++++.+..+....+..+..++ +...+.|.|++.+.|=+ ...++.+.
T Consensus 16 ~~~~~i~~~~~~~---gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~~~~-~~~~~~l~ 75 (269)
T cd06297 16 RLLEGIEGALLEQ---RYDLALFPLLSLARLKRYLESTTLAYLTDGLLLASYDLT-ERLAERRL 75 (269)
T ss_pred HHHHHHHHHHHHC---CCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecCccC-hHHHHHHh
Confidence 3344454555542 466655555544444444543 55667999999987633 34555553
No 210
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=49.37 E-value=1.7e+02 Score=25.22 Aligned_cols=47 Identities=21% Similarity=0.269 Sum_probs=27.7
Q ss_pred CccEEEE-ecC-CccHHHHHHHHHHHcCCCEEEEEeCCch-HHHHHHHHH
Q 025520 80 DCNICES-LTS-GPSHAIDITREAIKEGADAVIAVGGDGT-LHEVVNGFF 126 (251)
Q Consensus 80 ~~~~~~~-~t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGT-l~~vln~l~ 126 (251)
++++.+. .+. ++....+..+.+...+.|.|++.+.|-+ +...+..+.
T Consensus 29 g~~v~~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~~~~~~~~~~~~~~~~ 78 (298)
T cd06302 29 GVDAIYVGPTTADAAGQVQIIEDLIAQGVDAIAVVPNDPDALEPVLKKAR 78 (298)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHHHH
Confidence 3555433 232 2333445556666678999999987744 345566554
No 211
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=49.18 E-value=1.5e+02 Score=24.58 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=31.8
Q ss_pred HHHHHHHHhhcCCCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHH
Q 025520 67 KKLLPYLRSRLSVDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFF 126 (251)
Q Consensus 67 ~~i~~~L~~~~~~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~ 126 (251)
+.++..+++. ++++.+..+.. +....+..+++...+.|.|++.+.+.+ ..++..+.
T Consensus 19 ~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~-~~~~~~l~ 75 (268)
T cd06298 19 RGIDDIATMY---KYNIILSNSDNDKEKELKVLNNLLAKQVDGIIFMGGKIS-EEHREEFK 75 (268)
T ss_pred HHHHHHHHHc---CCeEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeCCCCc-HHHHHHHh
Confidence 3344444442 35555444432 333455666677778999999976543 34555553
No 212
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=48.66 E-value=1.9e+02 Score=25.49 Aligned_cols=79 Identities=9% Similarity=0.019 Sum_probs=48.0
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEE--EecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICE--SLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~--~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
...+++.+|..... -+ ......+...+++. ++++.. .......+...+++++...+.|.|++.+-.+....+
T Consensus 142 ~~~~~va~l~~~~~-~g--~~~~~~~~~~~~~~---G~~vv~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~~~~~~~~~~ 215 (344)
T cd06345 142 HGFKTAAIVAEDAA-WG--KGIDAGIKALLPEA---GLEVVSVERFSPDTTDFTPILQQIKAADPDVIIAGFSGNVGVLF 215 (344)
T ss_pred CCCceEEEEecCch-hh--hHHHHHHHHHHHHc---CCeEEEEEecCCCCCchHHHHHHHHhcCCCEEEEeecCchHHHH
Confidence 56788988875443 22 33444455566653 233322 222234567778888888889988887766666667
Q ss_pred HHHHHhC
Q 025520 122 VNGFFSA 128 (251)
Q Consensus 122 ln~l~~~ 128 (251)
+..+...
T Consensus 216 ~~~~~~~ 222 (344)
T cd06345 216 TQQWAEQ 222 (344)
T ss_pred HHHHHHc
Confidence 7777643
No 213
>PF12219 End_tail_spike: Catalytic domain of bacteriophage endosialidase; InterPro: IPR024430 This entry represents the C-terminal domain of endosialidases which is approximately 160 amino acids in length. There are two conserved sequence motifs: VSR and YGA. The endosialidase protein forms homotrimeric molecules and this domain complexes into a tail-spike stalk. The stalk region folds in a triple beta-helix that is interrupted by a small triple beta-prism domain. The tail-spike is a multifunctional protein device used by the phage to fulfil the following functions: (i) to adsorb to the bacterial polySia capsule (ii) to de-polymerise the capsule to gain access to the outer bacterial membrane, and finally (iii) to mediate tight adhesion to the membrane, a prerequisite for the initiation of the infection cycle [].; PDB: 3JU4_A 3GW6_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=48.21 E-value=11 Score=29.80 Aligned_cols=14 Identities=36% Similarity=0.669 Sum_probs=11.4
Q ss_pred CEEEEEeCCchHHH
Q 025520 107 DAVIAVGGDGTLHE 120 (251)
Q Consensus 107 d~ivv~GGDGTl~~ 120 (251)
.+||++|||||-+.
T Consensus 86 QRlIvsGGegtss~ 99 (160)
T PF12219_consen 86 QRLIVSGGEGTSSS 99 (160)
T ss_dssp -EEEEESSSSSSGG
T ss_pred cEEEEeCCCCcccC
Confidence 58999999999654
No 214
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=48.14 E-value=32 Score=29.57 Aligned_cols=56 Identities=23% Similarity=0.356 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhh
Q 025520 93 HAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFAR 158 (251)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~ 158 (251)
...+.++++...+.|.|+|.|=||.=.+-+..++.+- ....+|+.+.| |+.+....
T Consensus 15 ~~~~~~~~~~~~gtdai~vGGS~~vt~~~~~~~v~~i---------k~~~lPvilfp-~~~~~i~~ 70 (223)
T TIGR01768 15 EADEIAKAAAESGTDAILIGGSQGVTYEKTDTLIEAL---------RRYGLPIILFP-SNPTNVSR 70 (223)
T ss_pred ccHHHHHHHHhcCCCEEEEcCCCcccHHHHHHHHHHH---------hccCCCEEEeC-CCccccCc
Confidence 4556778888889999999999987666555554321 12348999999 44444433
No 215
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=48.04 E-value=56 Score=28.86 Aligned_cols=64 Identities=14% Similarity=0.142 Sum_probs=34.3
Q ss_pred EEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecC------CccHHHHHHHHH----HHcCCCE-EEEEeCCchHH
Q 025520 52 VVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTS------GPSHAIDITREA----IKEGADA-VIAVGGDGTLH 119 (251)
Q Consensus 52 ivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~------~~~~a~~~~~~~----~~~~~d~-ivv~GGDGTl~ 119 (251)
|+.|.++-... +.+++.++.|+++ ++++.+-.+- ..+..++-++++ ...+.|. +.+.||+|+..
T Consensus 3 iiapSs~~~~~-~~~~~~~~~L~~~---G~~v~~~~~~~~~~~~~a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga~r 77 (282)
T cd07025 3 IVAPSSPIDEE-ERLERAIARLESL---GLEVVVGPHVLARDGYLAGTDEERAADLNAAFADPEIKAIWCARGGYGANR 77 (282)
T ss_pred EEeCCCCCCcH-HHHHHHHHHHHhC---CCEEEeccchhhhcCccCCCHHHHHHHHHHHhhCCCCCEEEEcCCcCCHHH
Confidence 67888764332 5666677778764 3433321111 123333334443 3345665 45679999864
No 216
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=47.88 E-value=1.1e+02 Score=26.09 Aligned_cols=64 Identities=11% Similarity=-0.008 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHhhcC-CCccEEEEecC-CccHHHHHHHHHHHcCCCEEEEEeCC-chHHHHHHHHHh
Q 025520 64 KEWKKLLPYLRSRLS-VDCNICESLTS-GPSHAIDITREAIKEGADAVIAVGGD-GTLHEVVNGFFS 127 (251)
Q Consensus 64 ~~~~~i~~~L~~~~~-~~~~~~~~~t~-~~~~a~~~~~~~~~~~~d~ivv~GGD-GTl~~vln~l~~ 127 (251)
..|..+..-+...+. .++++....+. ++....+..+++...+.|.|++...| ....+.+..+..
T Consensus 12 ~f~~~~~~gi~~~~~~~G~~~~~~~~~~d~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~i~~~~~ 78 (272)
T cd06313 12 TWCAQGKQAADEAGKLLGVDVTWYGGALDAVKQVAAIENMASQGWDFIAVDPLGIGTLTEAVQKAIA 78 (272)
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHhHHHHHHHHH
Confidence 344444443333221 23555544444 23344456677778889999998766 556777777753
No 217
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=47.79 E-value=1.4e+02 Score=25.39 Aligned_cols=49 Identities=22% Similarity=0.313 Sum_probs=29.7
Q ss_pred HHcCCCEEEEEeCCchH---------------HHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhhc
Q 025520 102 IKEGADAVIAVGGDGTL---------------HEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTF 160 (251)
Q Consensus 102 ~~~~~d~ivv~GGDGTl---------------~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~l 160 (251)
..+.||.|++.||-|.. ++-+..+++. ....+.+++.|=.|. -.++..+
T Consensus 82 ~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~---------f~~~gK~vaAIChgp-~iL~~~~ 145 (217)
T PRK11780 82 DAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRA---------FHQAGKPIGFICIAP-AMLPKIL 145 (217)
T ss_pred ChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHH---------HHHCCCEEEEECHHH-HHHHHHh
Confidence 34579999999998863 3333333321 123456888887776 3444444
No 218
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=47.57 E-value=1.7e+02 Score=24.45 Aligned_cols=55 Identities=11% Similarity=0.163 Sum_probs=31.1
Q ss_pred HHHHHHHhhcCCCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHH
Q 025520 68 KLLPYLRSRLSVDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFF 126 (251)
Q Consensus 68 ~i~~~L~~~~~~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~ 126 (251)
.+...+++. ++++....+.. +....+.++.+...+.|.|++.+.+.. ..++..+.
T Consensus 20 ~i~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~-~~~~~~l~ 75 (268)
T cd06273 20 AFQETLAAH---GYTLLVASSGYDLDREYAQARKLLERGVDGLALIGLDHS-PALLDLLA 75 (268)
T ss_pred HHHHHHHHC---CCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHHHH
Confidence 344444442 35554443332 333446667777778999999887654 34455443
No 219
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=47.27 E-value=1.9e+02 Score=25.09 Aligned_cols=75 Identities=8% Similarity=0.085 Sum_probs=47.1
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFF 126 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~ 126 (251)
+.+.||+...+.. -..+.+..++..+++. ++.+.+..|....+.++..+.+.+.+.|.||+++-+.. .+-+..+.
T Consensus 2 ~~IGvivp~~~np-ff~~ii~gIe~~a~~~---Gy~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~s~~~~-~~~l~~~~ 76 (279)
T PF00532_consen 2 KTIGVIVPDISNP-FFAEIIRGIEQEAREH---GYQLLLCNTGDDEEKEEYIELLLQRRVDGIILASSEND-DEELRRLI 76 (279)
T ss_dssp CEEEEEESSSTSH-HHHHHHHHHHHHHHHT---TCEEEEEEETTTHHHHHHHHHHHHTTSSEEEEESSSCT-CHHHHHHH
T ss_pred CEEEEEECCCCCc-HHHHHHHHHHHHHHHc---CCEEEEecCCCchHHHHHHHHHHhcCCCEEEEecccCC-hHHHHHHH
Confidence 4677888655321 1123334444555543 46666666666666557777788889999999977777 55566565
No 220
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=46.63 E-value=1.2e+02 Score=26.58 Aligned_cols=18 Identities=33% Similarity=0.311 Sum_probs=15.9
Q ss_pred CCCEEEEEeCCchHHHHHH
Q 025520 105 GADAVIAVGGDGTLHEVVN 123 (251)
Q Consensus 105 ~~d~ivv~GGDGTl~~vln 123 (251)
..|.+|..|| +|+.|++.
T Consensus 241 ~aDl~Is~~G-~T~~E~~a 258 (279)
T TIGR03590 241 EADLAIGAAG-STSWERCC 258 (279)
T ss_pred HCCEEEECCc-hHHHHHHH
Confidence 6789999999 99998876
No 221
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=46.42 E-value=1.2e+02 Score=26.16 Aligned_cols=45 Identities=11% Similarity=0.065 Sum_probs=29.1
Q ss_pred ccEEEEecC-CccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHh
Q 025520 81 CNICESLTS-GPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFS 127 (251)
Q Consensus 81 ~~~~~~~t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~ 127 (251)
+++..+... .+.+..+.++++..+++|.|++.|. .+.+.+.....
T Consensus 32 v~~~~~e~~~~~~~~~~~i~~~~~~g~dlIi~~g~--~~~~~~~~vA~ 77 (258)
T cd06353 32 VEVTYVENVPEGADAERVLRELAAQGYDLIFGTSF--GFMDAALKVAK 77 (258)
T ss_pred CeEEEEecCCchHhHHHHHHHHHHcCCCEEEECch--hhhHHHHHHHH
Confidence 455445555 5667778888888889999887332 45555555543
No 222
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=46.10 E-value=1.6e+02 Score=23.90 Aligned_cols=102 Identities=10% Similarity=0.069 Sum_probs=55.0
Q ss_pred CCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHH-cCCCEEEEEe----CCch
Q 025520 43 SSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIK-EGADAVIAVG----GDGT 117 (251)
Q Consensus 43 ~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~-~~~d~ivv~G----GDGT 117 (251)
.....|+.|++---- ..-.+...+.....|+.+....-++.++.....-|.--.++++.+ .++|.||++| |+-.
T Consensus 7 ~~~~~riaIV~srfn-~~It~~Ll~gA~~~l~~~G~~~~~i~v~~VPGA~EiP~~a~~l~~~~~yDaiIaLG~VIrGeT~ 85 (158)
T PRK12419 7 FATPQRIAFIQARWH-ADIVDQARKGFVAEIAARGGAASQVDIFDVPGAFEIPLHAQTLAKTGRYAAIVAAALVVDGGIY 85 (158)
T ss_pred CCCCCEEEEEEecCC-HHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEEEEEEcCCCc
Confidence 334458888874321 112233334444556654321134555666566666666777764 4699999888 4432
Q ss_pred -----HHHHHHHHHhCCcccccccccccCCceEEEecCCC
Q 025520 118 -----LHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGT 152 (251)
Q Consensus 118 -----l~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GT 152 (251)
-+++.++|.+-. -+....+.+|+|-..|
T Consensus 86 H~e~V~~~v~~gl~~vs-------l~~~~PV~fGVLT~~~ 118 (158)
T PRK12419 86 RHEFVAQAVIDGLMRVQ-------LDTEVPVFSVVLTPHH 118 (158)
T ss_pred hhHHHHHHHHHHHHHHH-------hccCCCEEEEecCCCc
Confidence 345666666422 1223344566666555
No 223
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=46.04 E-value=1.8e+02 Score=24.79 Aligned_cols=33 Identities=12% Similarity=0.117 Sum_probs=23.4
Q ss_pred HHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHh
Q 025520 95 IDITREAIKEGADAVIAVGGDGTLHEVVNGFFS 127 (251)
Q Consensus 95 ~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~ 127 (251)
.++.+.+...+.|.|++...+.+..+.+..+..
T Consensus 50 ~~~i~~l~~~~vDgiIv~~~~~~~~~~~~~l~~ 82 (280)
T cd06303 50 SQQLNEALQSKPDYLIFTLDSLRHRKLIERVLA 82 (280)
T ss_pred HHHHHHHHHcCCCEEEEcCCchhhHHHHHHHHh
Confidence 345566777899999998876655666766653
No 224
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=45.79 E-value=1.8e+02 Score=24.27 Aligned_cols=78 Identities=6% Similarity=0.143 Sum_probs=46.0
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEE--ecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICES--LTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVN 123 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~--~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln 123 (251)
.+++.+|..... ......+.+...++.. +.++... ......+...+++++...+.|.|++++.+.....+++
T Consensus 136 ~~~v~iv~~~~~---~~~~~~~~~~~~~~~~---g~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~ 209 (299)
T cd04509 136 WKKVAILYDDDS---YGRGLLEAFKAAFKKK---GGTVVGEEYYPLGTTDFTSLLQKLKAAKPDVIVLCGSGEDAATILK 209 (299)
T ss_pred CcEEEEEecCch---HHHHHHHHHHHHHHHc---CCEEEEEecCCCCCccHHHHHHHHHhcCCCEEEEcccchHHHHHHH
Confidence 678888876543 1223333444555543 2333211 1222245667777777667888888776688888888
Q ss_pred HHHhCC
Q 025520 124 GFFSAG 129 (251)
Q Consensus 124 ~l~~~~ 129 (251)
.+...+
T Consensus 210 ~~~~~g 215 (299)
T cd04509 210 QAAEAG 215 (299)
T ss_pred HHHHcC
Confidence 887543
No 225
>PF05893 LuxC: Acyl-CoA reductase (LuxC); InterPro: IPR008670 This family consists of several bacterial Acyl-CoA reductase (LuxC) proteins. The channelling of fatty acids into the fatty aldehyde substrate for the bacterial bioluminescence reaction is catalysed by a fatty acid reductase multienzyme complex, which channels fatty acids through the thioesterase (LuxD), synthetase (LuxE) and reductase (LuxC) components [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0008218 bioluminescence, 0055114 oxidation-reduction process
Probab=45.75 E-value=32 Score=32.10 Aligned_cols=44 Identities=25% Similarity=0.306 Sum_probs=28.5
Q ss_pred cCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCC
Q 025520 104 EGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGT 152 (251)
Q Consensus 104 ~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GT 152 (251)
..+|.+|+.|||-|+..+-.-+-... ....-..+..+++|-.-.
T Consensus 167 ~~~D~vv~wGgd~ti~~ir~~~~~~~-----~~i~fg~k~S~avi~~~~ 210 (399)
T PF05893_consen 167 QQADAVVAWGGDETIRAIRQPLPPGA-----RLIEFGPKYSFAVIDAEA 210 (399)
T ss_pred HHCCEEEEeCCHHHHHHHHHHcCCCC-----cEeeeCCceEEEEEcCch
Confidence 46899999999999999988432111 111224456666665543
No 226
>PRK09273 hypothetical protein; Provisional
Probab=45.56 E-value=67 Score=27.39 Aligned_cols=32 Identities=6% Similarity=0.178 Sum_probs=19.0
Q ss_pred EEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEE
Q 025520 52 VVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICES 86 (251)
Q Consensus 52 ivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~ 86 (251)
++|-.|...+..-+++.+...|+.. ++++..+
T Consensus 5 li~e~sqa~kn~~i~~~L~~~L~~~---G~eV~D~ 36 (211)
T PRK09273 5 LINENSQAAKNAIIYEALKKVADPK---GHEVFNY 36 (211)
T ss_pred eecccchhhhhHHHHHHHHHHHHHC---CCEEEEe
Confidence 4566665555556677777777764 3455443
No 227
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=45.32 E-value=1.8e+02 Score=24.18 Aligned_cols=67 Identities=12% Similarity=0.031 Sum_probs=36.7
Q ss_pred EEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCC--ccHHHHHHHHHHHcCCCEEEEEeCCchHH
Q 025520 49 LVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSG--PSHAIDITREAIKEGADAVIAVGGDGTLH 119 (251)
Q Consensus 49 i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~--~~~a~~~~~~~~~~~~d~ivv~GGDGTl~ 119 (251)
+.||+ |...+.-....++.++..+++. ++++.+..++. .....+..+.+...+.|.|++.+-+-.-.
T Consensus 2 i~vi~-~~~~~~~~~~~~~gi~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~ 70 (264)
T cd01574 2 IGVVT-TDLALHGPSSTLAAIESAAREA---GYAVTLSMLAEADEEALRAAVRRLLAQRVDGVIVNAPLDDAD 70 (264)
T ss_pred EEEEe-CCCCcccHHHHHHHHHHHHHHC---CCeEEEEeCCCCchHHHHHHHHHHHhcCCCEEEEeCCCCChH
Confidence 34555 4332222233444455555542 45555555543 23455666777778899999887654443
No 228
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=45.32 E-value=1.8e+02 Score=25.28 Aligned_cols=70 Identities=7% Similarity=0.060 Sum_probs=38.4
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCch
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGT 117 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGT 117 (251)
++.+.+.++++..+ +.-....++.+...+.+. ++++.+..+.. +....+..+.+...+.|.|++.+.+..
T Consensus 54 ~~~~~Igvi~~~~~-~~~~~~~~~gi~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~ 124 (327)
T PRK10423 54 NQTRTIGMLITAST-NPFYSELVRGVERSCFER---GYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETH 124 (327)
T ss_pred CCCCeEEEEeCCCC-CCcHHHHHHHHHHHHHHc---CCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 35567888875332 222233344444555542 35554444432 233335556666778999999987754
No 229
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=44.79 E-value=2.2e+02 Score=25.19 Aligned_cols=79 Identities=9% Similarity=0.022 Sum_probs=51.8
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEE--EEecCCccHHHHHHHHHHHcCCCEEEEEeCCc-hHHH
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNIC--ESLTSGPSHAIDITREAIKEGADAVIAVGGDG-TLHE 120 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~--~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDG-Tl~~ 120 (251)
...+++.+|+.... -+...++.+...+++.. .++. ........+....++++...+.|.|++++-.. ....
T Consensus 136 ~~~~~v~il~~d~~---~g~~~~~~~~~~l~~~G---~~vv~~~~~~~~~~D~s~~i~~i~~~~~d~v~~~~~~~~~~~~ 209 (347)
T cd06336 136 PGGKKVALLGPNDA---YGQPWVAAYKAAWEAAG---GKVVSEEPYDPGTTDFSPIVTKLLAEKPDVIFLGGPSPAPAAL 209 (347)
T ss_pred cCCceEEEEccCCc---hhHHHHHHHHHHHHHcC---CEEeeecccCCCCcchHHHHHHHHhcCCCEEEEcCCCchHHHH
Confidence 46788999985543 22345555666676542 2322 12223356777888888888999998887666 8888
Q ss_pred HHHHHHhC
Q 025520 121 VVNGFFSA 128 (251)
Q Consensus 121 vln~l~~~ 128 (251)
+++.+...
T Consensus 210 ~~~~~~~~ 217 (347)
T cd06336 210 VIKQAREL 217 (347)
T ss_pred HHHHHHHc
Confidence 88888654
No 230
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=44.31 E-value=2e+02 Score=26.19 Aligned_cols=81 Identities=12% Similarity=0.097 Sum_probs=48.1
Q ss_pred CCCCeEEEEEcCCCCCCCh-hhHHHHHHHHHHhhcCCCccEEEEec--CCccHHHHHHHHHHHcCCCEEEEEeCCchHHH
Q 025520 44 SRRRDLVFVVNPRGASGRT-GKEWKKLLPYLRSRLSVDCNICESLT--SGPSHAIDITREAIKEGADAVIAVGGDGTLHE 120 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~-~~~~~~i~~~L~~~~~~~~~~~~~~t--~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~ 120 (251)
-..+++.+|+.-.. -++. ....+.+...++.. +.++..... ....+..++.+++...+ ++||+++..-.+..
T Consensus 135 ~~W~~vaiiy~~~~-~~~~~~~~~~~l~~~~~~~---gi~v~~~~~~~~~~~d~~~~l~~ik~~~-rvii~~~~~~~~~~ 209 (387)
T cd06386 135 FHWRSALLVYEDDK-QERNCYFTLEGVHHVFQEE---GYHMSIYPFDETKDLDLDEIIRAIQASE-RVVIMCAGADTIRS 209 (387)
T ss_pred CCCeEEEEEEEcCC-CCccceehHHHHHHHHHhc---CceEEEEecCCCCcccHHHHHHHHHhcC-cEEEEecCHHHHHH
Confidence 36788888885322 2221 11244455556543 234433322 22347788888887666 88888888877788
Q ss_pred HHHHHHhCC
Q 025520 121 VVNGFFSAG 129 (251)
Q Consensus 121 vln~l~~~~ 129 (251)
++....+.+
T Consensus 210 ll~~A~~~g 218 (387)
T cd06386 210 IMLAAHRRG 218 (387)
T ss_pred HHHHHHHcC
Confidence 887776544
No 231
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=43.88 E-value=1.9e+02 Score=24.14 Aligned_cols=73 Identities=11% Similarity=-0.007 Sum_probs=37.5
Q ss_pred EEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCc-cHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHH
Q 025520 49 LVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGP-SHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFF 126 (251)
Q Consensus 49 i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~-~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~ 126 (251)
+.||+ |.-.+.-....++.+...+++. ++++.+..+.+. ....+..+.+...++|.|++.+-|-+... +..+.
T Consensus 2 igvi~-p~~~~~~~~~~~~g~~~~a~~~---g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgii~~~~~~~~~~-~~~~~ 75 (268)
T cd06270 2 IGLVV-SDLDGPFFGPLLSGVESVARKA---GKHLIITAGHHSAEKEREAIEFLLERRCDALILHSKALSDDE-LIELA 75 (268)
T ss_pred EEEEE-ccccCcchHHHHHHHHHHHHHC---CCEEEEEeCCCchHHHHHHHHHHHHcCCCEEEEecCCCCHHH-HHHHh
Confidence 45566 3322222223333344444442 355554444432 22345566677789999999987644332 45553
No 232
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=43.80 E-value=62 Score=24.93 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=23.8
Q ss_pred ecCCccHHHHHHHHHHHcCCCEEEEEeCCc-----hHHHHHHHHH
Q 025520 87 LTSGPSHAIDITREAIKEGADAVIAVGGDG-----TLHEVVNGFF 126 (251)
Q Consensus 87 ~t~~~~~a~~~~~~~~~~~~d~ivv~GGDG-----Tl~~vln~l~ 126 (251)
..++++...+..+++.+ ++|.|++.||=| -..+++..+.
T Consensus 41 v~Dd~~~i~~~i~~~~~-~~DlvittGG~g~g~~D~t~~ai~~~g 84 (133)
T cd00758 41 VPDDADSIRAALIEASR-EADLVLTTGGTGVGRRDVTPEALAELG 84 (133)
T ss_pred cCCCHHHHHHHHHHHHh-cCCEEEECCCCCCCCCcchHHHHHHhc
Confidence 34445555555555544 499999999966 2345555543
No 233
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=43.40 E-value=1.9e+02 Score=23.96 Aligned_cols=56 Identities=13% Similarity=0.121 Sum_probs=33.3
Q ss_pred HHHHHHHHhhcCCCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHH
Q 025520 67 KKLLPYLRSRLSVDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFF 126 (251)
Q Consensus 67 ~~i~~~L~~~~~~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~ 126 (251)
+.+...++.. ++++.+..+.. .....+..+++...++|.|++.+-|-+ .+.++.+.
T Consensus 19 ~gi~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~-~~~~~~~~ 75 (268)
T cd01575 19 QGISDVLEAA---GYQLLLGNTGYSPEREEELLRTLLSRRPAGLILTGLEHT-ERTRQLLR 75 (268)
T ss_pred HHHHHHHHHc---CCEEEEecCCCCchhHHHHHHHHHHcCCCEEEEeCCCCC-HHHHHHHH
Confidence 3344444442 35554444432 334456677777788999999998765 45555554
No 234
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=42.81 E-value=2.3e+02 Score=25.64 Aligned_cols=78 Identities=14% Similarity=0.128 Sum_probs=48.1
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEE--EEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNIC--ESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~--~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
..+++.+|....+ -++...+.+...+++.. .++. +.......+....+.++...++|.|++.|.+..+..++
T Consensus 160 ~~k~va~i~~d~~---~g~~~~~~~~~~~~~~G---~~v~~~~~~~~g~~D~~~~v~~l~~~~~d~v~~~~~~~~~~~~~ 233 (369)
T PRK15404 160 KPKRIAVLHDKQQ---YGEGLARSVKDGLKKAG---ANVVFFEGITAGDKDFSALIAKLKKENVDFVYYGGYHPEMGQIL 233 (369)
T ss_pred CCCEEEEEeCCCc---hhHHHHHHHHHHHHHcC---CEEEEEEeeCCCCCchHHHHHHHHhcCCCEEEECCCchHHHHHH
Confidence 4678888886543 12344455556666542 3332 22223345677778888888999988766666666677
Q ss_pred HHHHhC
Q 025520 123 NGFFSA 128 (251)
Q Consensus 123 n~l~~~ 128 (251)
..+...
T Consensus 234 k~~~~~ 239 (369)
T PRK15404 234 RQAREA 239 (369)
T ss_pred HHHHHC
Confidence 776543
No 235
>PRK06756 flavodoxin; Provisional
Probab=42.48 E-value=1.6e+02 Score=22.80 Aligned_cols=69 Identities=23% Similarity=0.245 Sum_probs=37.6
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEe---CCchHHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVG---GDGTLHEVV 122 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~G---GDGTl~~vl 122 (251)
++++.||+-. ..|++.+..+.+...|+.. +.++.++........ .++ .++|.|+++- |+|.+...+
T Consensus 1 mmkv~IiY~S--~tGnTe~vA~~ia~~l~~~---g~~v~~~~~~~~~~~----~~~--~~~d~vi~gspt~~~g~~p~~~ 69 (148)
T PRK06756 1 MSKLVMIFAS--MSGNTEEMADHIAGVIRET---ENEIEVIDIMDSPEA----SIL--EQYDGIILGAYTWGDGDLPDDF 69 (148)
T ss_pred CceEEEEEEC--CCchHHHHHHHHHHHHhhc---CCeEEEeehhccCCH----HHH--hcCCeEEEEeCCCCCCCCcHHH
Confidence 3578888844 4577778777777777653 234433332221111 112 3577776653 677666533
Q ss_pred HHH
Q 025520 123 NGF 125 (251)
Q Consensus 123 n~l 125 (251)
..+
T Consensus 70 ~~f 72 (148)
T PRK06756 70 LDF 72 (148)
T ss_pred HHH
Confidence 333
No 236
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=42.44 E-value=2e+02 Score=23.86 Aligned_cols=58 Identities=10% Similarity=0.095 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhcCCCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHH
Q 025520 65 EWKKLLPYLRSRLSVDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFF 126 (251)
Q Consensus 65 ~~~~i~~~L~~~~~~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~ 126 (251)
..+.+...++.. ++.+.++.+.. +....+..+++...++|.|++.+.|..- ..++.+.
T Consensus 17 ~~~~i~~~a~~~---g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~~~~~-~~l~~~~ 75 (267)
T cd06283 17 VLKGIEDVCRAH---GYQVLVCNSDNDPEKEKEYLESLLAYQVDGLIVNPTGNNK-ELYQRLA 75 (267)
T ss_pred HHHHHHHHHHHc---CCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEeCCCCCh-HHHHHHh
Confidence 334444555543 35554444432 2333455566777789999999887653 2355543
No 237
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=42.43 E-value=1.5e+02 Score=24.89 Aligned_cols=77 Identities=17% Similarity=0.241 Sum_probs=35.4
Q ss_pred CCeEEEEEcCCCCCCChhhHHHH--HHHHHHhhcCCCccEEEEecCCccH-HHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKK--LLPYLRSRLSVDCNICESLTSGPSH-AIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~--i~~~L~~~~~~~~~~~~~~t~~~~~-a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
.++-+|++||.++. ..+.|.. ....++...... +.++....+++ ..++++++...-.+.++..-|.-+|.+++
T Consensus 103 ~~~~~i~i~~~a~~--~~k~wp~e~~~~l~~~l~~~~--~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ 178 (247)
T PF01075_consen 103 KDKPYIGINPGASW--PSKRWPAEKWAELIERLKERG--YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELA 178 (247)
T ss_dssp TTSSEEEEE---SS--GGGS--HHHHHHHHHHHCCCT---EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHH
T ss_pred ccCCeEEEeecCCC--ccccCCHHHHHHHHHHHHhhC--ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHH
Confidence 34456888888754 3455432 222333322222 34455556655 56666666543111245556667888888
Q ss_pred HHHH
Q 025520 123 NGFF 126 (251)
Q Consensus 123 n~l~ 126 (251)
..+.
T Consensus 179 ali~ 182 (247)
T PF01075_consen 179 ALIS 182 (247)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7665
No 238
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=42.20 E-value=1.9e+02 Score=25.88 Aligned_cols=37 Identities=11% Similarity=-0.013 Sum_probs=26.9
Q ss_pred ccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHh
Q 025520 91 PSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFS 127 (251)
Q Consensus 91 ~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~ 127 (251)
..+...++.++...++|.|++++-......++..+..
T Consensus 189 ~~D~~~~v~~ik~a~pD~v~~~~~~~~~~~~~~~~~~ 225 (357)
T cd06337 189 TDDFSSQINAFKREGVDIVTGFAIPPDFATFWRQAAQ 225 (357)
T ss_pred CCcHHHHHHHHHhcCCCEEEeCCCccHHHHHHHHHHH
Confidence 4567777888888899998877655556667777754
No 239
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=41.81 E-value=1.3e+02 Score=27.13 Aligned_cols=68 Identities=21% Similarity=0.226 Sum_probs=34.2
Q ss_pred CCCeEEEEE--cCCCCCCCh-hhHHHHHHHHHHhhcCCCccEE--EEecCCccHHHHHHHHHHHcCCCEEEEEeCCc
Q 025520 45 RRRDLVFVV--NPRGASGRT-GKEWKKLLPYLRSRLSVDCNIC--ESLTSGPSHAIDITREAIKEGADAVIAVGGDG 116 (251)
Q Consensus 45 ~~~~i~viv--NP~sg~g~~-~~~~~~i~~~L~~~~~~~~~~~--~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDG 116 (251)
+..++.||. |.-. .++. ++.-.-+...|++. ++++. .+..++++...+..+++..+++|.||+.||=|
T Consensus 158 r~~rv~II~TG~Ev~-~G~i~D~~~~~l~~~L~~~---G~~v~~~~iv~Dd~~~I~~ai~~~~~~g~DlIItTGGts 230 (312)
T cd03522 158 RPLRVGLIVTGSEVY-GGRIEDKFGPVLRARLAAL---GVELVEQVIVPHDEAAIAAAIAEALEAGAELLILTGGAS 230 (312)
T ss_pred CCCEEEEEEcCCcCC-CCcEEEhHHHHHHHHHHHC---CCEEEEEEEcCCCHHHHHHHHHHHhcCCCCEEEEeCCcc
Confidence 445677776 3221 1221 22222234445553 23332 23344445555555555555689999999844
No 240
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=41.44 E-value=74 Score=29.02 Aligned_cols=103 Identities=21% Similarity=0.264 Sum_probs=53.5
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEE---ecCC-ccHHHHHHHHHHHcC--CCEEEEEeCCchHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICES---LTSG-PSHAIDITREAIKEG--ADAVIAVGGDGTLHE 120 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~---~t~~-~~~a~~~~~~~~~~~--~d~ivv~GGDGTl~~ 120 (251)
++++|+..+...+ ...++++...|+.. .+.++ ..+. .++..+.++.+.+.+ +|.||.+|| |++.+
T Consensus 24 ~r~lvVtd~~~~~---~g~~~~v~~~L~~~-----~~~~~~~v~~~pt~~~v~~~~~~~~~~~~~~D~IIaiGG-GSviD 94 (355)
T TIGR03405 24 RRVVVVTFPEARA---LGLARRLEALLGGR-----LAALIDDVAPNPDVAQLDGLYARLWGDEGACDLVIALGG-GSVID 94 (355)
T ss_pred CeEEEEECcchhh---cchHHHHHHHhccC-----cEEEeCCCCCCcCHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHH
Confidence 7899998765421 23445555556432 12222 1111 233444444444445 899999998 77777
Q ss_pred HHHHHHh---CCcc--cc-----cccccccCCceEEEecC--CChhHHhh
Q 025520 121 VVNGFFS---AGKL--VT-----NHNRESAHSTALGLIPL--GTGSDFAR 158 (251)
Q Consensus 121 vln~l~~---~~~~--~~-----~~~~~~~~~~~lgilP~--GTgN~fa~ 158 (251)
+...+.. +... +. .........+|+..||. |||-....
T Consensus 95 ~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTTagTGSE~t~ 144 (355)
T TIGR03405 95 TAKVLAVGLRRGEFDLLLQLLRNGRDFAPTARLPLVAIPTTAGTGSEVTP 144 (355)
T ss_pred HHHHHHHHHhCCCcccHHHHHhcCCccCCCCCCCEEEEcCCCcchhhhcC
Confidence 7765432 1100 00 00000124578999986 66654443
No 241
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=41.35 E-value=2.1e+02 Score=23.94 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=27.9
Q ss_pred ccEEEEecC-CccHHHHHHHHHHHcCCCEEEEEeCCch-HHHHHHHHH
Q 025520 81 CNICESLTS-GPSHAIDITREAIKEGADAVIAVGGDGT-LHEVVNGFF 126 (251)
Q Consensus 81 ~~~~~~~t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGT-l~~vln~l~ 126 (251)
+++.+..+. ++....+..+++...+.|.|++.+.|-+ ..+.+..+.
T Consensus 31 ~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~ 78 (270)
T cd06308 31 VELIIADAADDNSKQVADIENFIRQGVDLLIISPNEAAPLTPVVEEAY 78 (270)
T ss_pred cEEEEEcCCCCHHHHHHHHHHHHHhCCCEEEEecCchhhchHHHHHHH
Confidence 555444332 2334445566677778999999987743 345566554
No 242
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=41.33 E-value=2.1e+02 Score=24.79 Aligned_cols=62 Identities=10% Similarity=0.056 Sum_probs=31.5
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHH--HHHHHHHHHcCCCEEEEEeCC
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHA--IDITREAIKEGADAVIAVGGD 115 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a--~~~~~~~~~~~~d~ivv~GGD 115 (251)
.++.||- .|. +.....++.+.+.+++..-. ++.++...+++++ .++.+.+ .+.|.|++.|||
T Consensus 29 ~rI~~ip--tAS-~~~~~~~~~~~~~~~~lG~~--~v~~l~i~~r~~a~~~~~~~~l--~~ad~I~~~GGn 92 (250)
T TIGR02069 29 AIIVIIT--SAS-EEPREVGERYITIFSRLGVK--EVKILDVREREDASDENAIALL--SNATGIFFTGGD 92 (250)
T ss_pred ceEEEEe--CCC-CChHHHHHHHHHHHHHcCCc--eeEEEecCChHHccCHHHHHHH--hhCCEEEEeCCC
Confidence 4566553 332 23334455566667664211 2333443333222 2233333 368999999999
No 243
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=41.32 E-value=50 Score=25.18 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=18.3
Q ss_pred cCCCEEEEEeCCchHHHHHHHHHhC
Q 025520 104 EGADAVIAVGGDGTLHEVVNGFFSA 128 (251)
Q Consensus 104 ~~~d~ivv~GGDGTl~~vln~l~~~ 128 (251)
..+|.++++.||+-+..+++.|...
T Consensus 94 ~~~d~ivLvSgD~Df~~~v~~l~~~ 118 (146)
T PF01936_consen 94 NPPDTIVLVSGDSDFAPLVRKLRER 118 (146)
T ss_dssp GG-SEEEEE---GGGHHHHHHHHHH
T ss_pred cCCCEEEEEECcHHHHHHHHHHHHc
Confidence 4569999999999999999999753
No 244
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=41.28 E-value=62 Score=24.14 Aligned_cols=37 Identities=22% Similarity=0.128 Sum_probs=24.8
Q ss_pred ccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHh
Q 025520 91 PSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFS 127 (251)
Q Consensus 91 ~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~ 127 (251)
.-..+++.+.+.+.++|+|.+..-++.-...+..+++
T Consensus 36 ~~~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~ 72 (119)
T cd02067 36 DVPPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIE 72 (119)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHH
Confidence 3445677777778889999998875554454444443
No 245
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=40.92 E-value=2.1e+02 Score=23.71 Aligned_cols=58 Identities=12% Similarity=0.032 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHH-HcCCCEEEEEeCCchHHHHHHHH
Q 025520 64 KEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAI-KEGADAVIAVGGDGTLHEVVNGF 125 (251)
Q Consensus 64 ~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~-~~~~d~ivv~GGDGTl~~vln~l 125 (251)
..++.++..+++. ++++.+..+....+..+.++++. ..++|.|++.+.+... ..+..+
T Consensus 20 ~~~~~i~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~-~~~~~~ 78 (268)
T cd06271 20 EFLSGLSEALAEH---GYDLVLLPVDPDEDPLEVYRRLVESGLVDGVIISRTRPDD-PRVALL 78 (268)
T ss_pred HHHHHHHHHHHHC---CceEEEecCCCcHHHHHHHHHHHHcCCCCEEEEecCCCCC-hHHHHH
Confidence 3344455555542 35555554444333334455554 4568999998876442 334444
No 246
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=40.90 E-value=1.4e+02 Score=25.04 Aligned_cols=42 Identities=19% Similarity=0.243 Sum_probs=27.2
Q ss_pred EecCCccHHHHHHHHHHH-cCCCEEEEEeCCch-----HHHHHHHHHh
Q 025520 86 SLTSGPSHAIDITREAIK-EGADAVIAVGGDGT-----LHEVVNGFFS 127 (251)
Q Consensus 86 ~~t~~~~~a~~~~~~~~~-~~~d~ivv~GGDGT-----l~~vln~l~~ 127 (251)
+..+..+...+..+++.+ +++|+||+.||=|. .-+++..++.
T Consensus 46 iVpDd~~~I~~aL~~a~~~~~~DlIITTGGtg~g~rDvTpeAv~~l~~ 93 (193)
T PRK09417 46 LIPDEQDLIEQTLIELVDEMGCDLVLTTGGTGPARRDVTPEATLAVAD 93 (193)
T ss_pred ECCCCHHHHHHHHHHHhhcCCCCEEEECCCCCCCCCCcHHHHHHHHhC
Confidence 344555555566666654 47999999999663 4566666654
No 247
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=40.76 E-value=1.1e+02 Score=24.97 Aligned_cols=48 Identities=21% Similarity=0.167 Sum_probs=33.8
Q ss_pred HcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhhcC
Q 025520 103 KEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFG 161 (251)
Q Consensus 103 ~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg 161 (251)
....|.++.+.|||=...+++.|.+.+ ..+...-.+-.|...|-++..
T Consensus 103 ~~~iD~~vLvSgD~DF~~Lv~~lre~G-----------~~V~v~g~~~~ts~~L~~acd 150 (160)
T TIGR00288 103 NPNIDAVALVTRDADFLPVINKAKENG-----------KETIVIGAEPGFSTALQNSAD 150 (160)
T ss_pred cCCCCEEEEEeccHhHHHHHHHHHHCC-----------CEEEEEeCCCCChHHHHHhcC
Confidence 467899999999999999999997543 223222236667777666543
No 248
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=40.68 E-value=1.1e+02 Score=27.63 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=30.1
Q ss_pred HHHHHHhhcCCCccEE--EEecCCccHHHHHHHHHHHcCCCEEEEEeCCch-----HHHHHHHHH
Q 025520 69 LLPYLRSRLSVDCNIC--ESLTSGPSHAIDITREAIKEGADAVIAVGGDGT-----LHEVVNGFF 126 (251)
Q Consensus 69 i~~~L~~~~~~~~~~~--~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGT-----l~~vln~l~ 126 (251)
+...|+... +++. .+..++++...+..+++..+++|+|++.||=|- ..+++..+.
T Consensus 180 L~~~L~~~G---~~v~~~~iVpDD~~~I~~al~~a~~~~~DlIITTGGtg~g~~D~tpeAl~~lg 241 (312)
T PRK03604 180 IVEGLEEAG---FEVSHYTIIPDEPAEIAAAVAAWIAEGYALIITTGGTGLGPRDVTPEALAPLL 241 (312)
T ss_pred HHHHHHHCC---CEEEEEEEcCCCHHHHHHHHHHhhhCCCCEEEECCCCCCCCCccHHHHHHHhc
Confidence 445566542 3322 233444445555555554467999999999542 344555443
No 249
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=40.20 E-value=2.6e+02 Score=24.65 Aligned_cols=80 Identities=15% Similarity=0.085 Sum_probs=47.3
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEE--EEecCCc-cHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNIC--ESLTSGP-SHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~--~~~t~~~-~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
..|++.+|....+ -+...++.+...+++.. .+.++. ....... .+...++.++.+.+.|.|++++..+....+
T Consensus 142 ~~k~v~i~~~~~~---~g~~~~~~~~~~~~~~~-~G~~vv~~~~~~~~~~~d~~~~i~~l~~~~~d~v~~~~~~~~~~~~ 217 (342)
T cd06329 142 DGKKVYLINQDYS---WGQDVAAAFKAMLAAKR-PDIQIVGEDLHPLGKVKDFSPYVAKIKASGADTVITGNWGNDLLLL 217 (342)
T ss_pred cCceEEEEeCChH---HHHHHHHHHHHHHHhhc-CCcEEeceeccCCCCCCchHHHHHHHHHcCCCEEEEcccCchHHHH
Confidence 4788887763332 22344555556666510 123332 1222233 566777888888899999998766666678
Q ss_pred HHHHHhC
Q 025520 122 VNGFFSA 128 (251)
Q Consensus 122 ln~l~~~ 128 (251)
+..+...
T Consensus 218 ~~~~~~~ 224 (342)
T cd06329 218 VKQAADA 224 (342)
T ss_pred HHHHHHc
Confidence 8887654
No 250
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=40.10 E-value=1.5e+02 Score=24.29 Aligned_cols=57 Identities=19% Similarity=0.263 Sum_probs=30.7
Q ss_pred HHHHHHhhcCCCc-cEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCch-----HHHHHHHHHh
Q 025520 69 LLPYLRSRLSVDC-NICESLTSGPSHAIDITREAIKEGADAVIAVGGDGT-----LHEVVNGFFS 127 (251)
Q Consensus 69 i~~~L~~~~~~~~-~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGT-----l~~vln~l~~ 127 (251)
+...|+... ... .+. +..+..........++..+.+|+|+..||-|- =-|++..+++
T Consensus 32 l~~~L~~ag-~~~~~~~-iV~D~~~~I~~~l~~~~~~~~DvvlttGGTG~t~RDvTpEA~~~~~d 94 (169)
T COG0521 32 LVELLEEAG-HNVAAYT-IVPDDKEQIRATLIALIDEDVDVVLTTGGTGITPRDVTPEATRPLFD 94 (169)
T ss_pred HHHHHHHcC-CccceEE-EeCCCHHHHHHHHHHHhcCCCCEEEEcCCccCCCCcCCHHHHHHHHh
Confidence 445566543 222 222 34444444444444544445999999999772 2345555554
No 251
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=39.82 E-value=1.6e+02 Score=24.46 Aligned_cols=45 Identities=27% Similarity=0.308 Sum_probs=26.0
Q ss_pred ccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHH
Q 025520 81 CNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (251)
Q Consensus 81 ~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l 125 (251)
+++.+..+.. +..+.+.++++..++.+.|+...+..+...++..+
T Consensus 41 v~~~~~d~~~~~~~~~~~~~~l~~~~v~~iig~~~~~~~~~~~~~~ 86 (298)
T cd06268 41 IELVVEDTQGDPEAAAAAARELVDDGVDAVIGPLSSGVALAAAPVA 86 (298)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHhCCceEEEcCCcchhHHhhHHHH
Confidence 3444445543 45666777888777777765444344455555544
No 252
>PRK03670 competence damage-inducible protein A; Provisional
Probab=39.78 E-value=1.1e+02 Score=26.59 Aligned_cols=44 Identities=9% Similarity=0.184 Sum_probs=24.8
Q ss_pred HHHHHHHhhcCCCccEE--EEecCCccHHHHHHHHHHHcCCCEEEEEeC
Q 025520 68 KLLPYLRSRLSVDCNIC--ESLTSGPSHAIDITREAIKEGADAVIAVGG 114 (251)
Q Consensus 68 ~i~~~L~~~~~~~~~~~--~~~t~~~~~a~~~~~~~~~~~~d~ivv~GG 114 (251)
-+...|... ++++. .+..++.++..+..+++..+.+|+|++.||
T Consensus 24 ~la~~L~~~---G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGG 69 (252)
T PRK03670 24 FIAQKLTEK---GYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVISGG 69 (252)
T ss_pred HHHHHHHHC---CCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEECCC
Confidence 345556653 23332 233444444455555554556899999999
No 253
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=39.60 E-value=96 Score=32.02 Aligned_cols=76 Identities=14% Similarity=0.055 Sum_probs=45.8
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEec----CCccHHHHHHHHHHHcCCCEEEEEeCCchHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLT----SGPSHAIDITREAIKEGADAVIAVGGDGTLHE 120 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t----~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~ 120 (251)
..++++|+..+...+ ...++++...|+.. ...+++.++.. .+.+...+.++.+...++|.||.+|| |++.+
T Consensus 479 ~~~~~lvVtd~~~~~---~g~~~~v~~~L~~~-~~~i~~~~~~~v~~np~~~~v~~~~~~~~~~~~D~IIaiGG-GSviD 553 (862)
T PRK13805 479 GKKRAFIVTDRFMVE---LGYVDKVTDVLKKR-ENGVEYEVFSEVEPDPTLSTVRKGAELMRSFKPDTIIALGG-GSPMD 553 (862)
T ss_pred CCCEEEEEECcchhh---cchHHHHHHHHhcc-cCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHH
Confidence 347888888765422 22456666777621 12344444421 12234556666666779999999998 77777
Q ss_pred HHHHH
Q 025520 121 VVNGF 125 (251)
Q Consensus 121 vln~l 125 (251)
+...+
T Consensus 554 ~AK~i 558 (862)
T PRK13805 554 AAKIM 558 (862)
T ss_pred HHHHH
Confidence 77665
No 254
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=39.27 E-value=2.3e+02 Score=23.77 Aligned_cols=79 Identities=18% Similarity=0.121 Sum_probs=47.0
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEE-EEecC--CccHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNIC-ESLTS--GPSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~-~~~t~--~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
..+++.+|..+.. .....+.+-+...++.+.. ..+.. ..... +...+.+.++++....+|. |++..|.+-..+
T Consensus 119 g~~~I~~i~~~~~--~~~~~R~~Gf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a-i~~~~d~~A~gv 194 (260)
T cd06304 119 KTGKVGFVGGMPI--PEVNRFINGFAAGAKSVNP-DITVLVIYTGSFFDPAKGKEAALALIDQGADV-IFAAAGGTGPGV 194 (260)
T ss_pred cCCceEEEecccc--HHHHHHHHHHHHHHHHhCC-CcEEEEEEecCccCcHHHHHHHHHHHhCCCCE-EEEcCCCCchHH
Confidence 5678888876532 2223334445556665421 12221 22222 2346677788877666776 588999999999
Q ss_pred HHHHHh
Q 025520 122 VNGFFS 127 (251)
Q Consensus 122 ln~l~~ 127 (251)
++.+.+
T Consensus 195 ~~al~~ 200 (260)
T cd06304 195 IQAAKE 200 (260)
T ss_pred HHHHHH
Confidence 999964
No 255
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=39.21 E-value=90 Score=25.56 Aligned_cols=47 Identities=13% Similarity=0.110 Sum_probs=29.0
Q ss_pred HHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 67 KKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 67 ~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
..+...|+.. +.++.++..+. .+..+ +.+..+|.||+.||.|+..+.
T Consensus 13 ~nl~~~l~~~---~~~~~v~~~~~-~~~~~----~~~~~~~~iilsgGP~~~~~~ 59 (191)
T PRK06774 13 YNLYQYFCEL---GTEVMVKRNDE-LQLTD----IEQLAPSHLVISPGPCTPNEA 59 (191)
T ss_pred HHHHHHHHHC---CCcEEEEeCCC-CCHHH----HHhcCCCeEEEcCCCCChHhC
Confidence 4466777763 34555544332 12222 333478999999999998765
No 256
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=39.16 E-value=91 Score=28.48 Aligned_cols=65 Identities=20% Similarity=0.207 Sum_probs=34.6
Q ss_pred HHHHHHHHHHc---CCCEEEEEeCCchHHHHHHHHH---hCCcccc---cccccccCCceEEEecC--CChhHHhhh
Q 025520 94 AIDITREAIKE---GADAVIAVGGDGTLHEVVNGFF---SAGKLVT---NHNRESAHSTALGLIPL--GTGSDFART 159 (251)
Q Consensus 94 a~~~~~~~~~~---~~d~ivv~GGDGTl~~vln~l~---~~~~~~~---~~~~~~~~~~~lgilP~--GTgN~fa~~ 159 (251)
..+.++.+... ++|.||.+|| |+.-++...+. .+...+. .........+|+..||. |||--..+.
T Consensus 67 v~~~~~~~~~~~~~~~D~IIaiGG-GS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~PlIaVPTTaGTGSE~t~~ 142 (347)
T cd08184 67 IDALTAQVKSFDGKLPCAIVGIGG-GSTLDVAKAVSNMLTNPGSAEDYQGWDLVKNPAVYKIGIPTLSGTGAEASRT 142 (347)
T ss_pred HHHHHHHHHhhCCCCCCEEEEeCC-cHHHHHHHHHHHHHhCCCCHHHhcccccccCCCCcEEEEeCCCccccccCCc
Confidence 34444444444 7999999998 66667665542 2110000 00001123467889995 777544433
No 257
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=38.86 E-value=2.3e+02 Score=23.70 Aligned_cols=76 Identities=17% Similarity=0.170 Sum_probs=43.7
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNG 124 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~ 124 (251)
..+++.++..+... ....+.+.++..++.. +.++......+..+..+.++++.. ..|. |++.+|.+...++..
T Consensus 130 g~~~i~~l~~~~~~--~~~~r~~g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~-~~da-i~~~~d~~a~~~~~~ 202 (281)
T cd06325 130 DAKTVGVLYNPSEA--NSVVQVKELKKAAAKL---GIEVVEATVSSSNDVQQAAQSLAG-KVDA-IYVPTDNTVASAMEA 202 (281)
T ss_pred CCcEEEEEeCCCCc--cHHHHHHHHHHHHHhC---CCEEEEEecCCHHHHHHHHHHhcc-cCCE-EEEcCchhHHhHHHH
Confidence 67888888766542 2334445555566542 233322112233445555666553 3565 556789888888888
Q ss_pred HHh
Q 025520 125 FFS 127 (251)
Q Consensus 125 l~~ 127 (251)
+..
T Consensus 203 ~~~ 205 (281)
T cd06325 203 VVK 205 (281)
T ss_pred HHH
Confidence 865
No 258
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=38.67 E-value=94 Score=26.84 Aligned_cols=46 Identities=26% Similarity=0.318 Sum_probs=33.8
Q ss_pred HHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCCh
Q 025520 99 REAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTG 153 (251)
Q Consensus 99 ~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTg 153 (251)
+++...+.|.|+|.|=||.-.+-+..++..- ....+|+.+.|....
T Consensus 26 ~~~~~~gtdai~vGGS~~vt~~~~~~~v~~i---------k~~~lPvilfp~~~~ 71 (232)
T PRK04169 26 EAICESGTDAIIVGGSDGVTEENVDELVKAI---------KEYDLPVILFPGNIE 71 (232)
T ss_pred HHHHhcCCCEEEEcCCCccchHHHHHHHHHH---------hcCCCCEEEeCCCcc
Confidence 5666789999999999987776666665432 125689999987664
No 259
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=38.55 E-value=2.2e+02 Score=23.36 Aligned_cols=82 Identities=17% Similarity=0.235 Sum_probs=45.9
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEe--cCCccHHHHHHHHHHHcCCC-EEEEEeCCchHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL--TSGPSHAIDITREAIKEGAD-AVIAVGGDGTLHEV 121 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~--t~~~~~a~~~~~~~~~~~~d-~ivv~GGDGTl~~v 121 (251)
..+++.+|.-+.. ......+.+.+...++++. ..++.... ..+..+..+.++++.....+ ..+++..|.....+
T Consensus 120 g~~~i~~i~~~~~-~~~~~~r~~gf~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~a~~~ 196 (267)
T cd01536 120 GKGKVAIIEGPPG-SSNAQERVKGFRDALKEYP--DIEIVAVQDGNWDREKALQAMEDLLQANPDIDAIFAANDSMALGA 196 (267)
T ss_pred CCceEEEEEcccc-cchHHHHHHHHHHHHHhCC--CcEEEEEecCCCcHHHHHHHHHHHHHhCCCccEEEEecCCchHHH
Confidence 5688888875432 1222334445556666542 23322221 22234556677776654433 35667778888889
Q ss_pred HHHHHhCC
Q 025520 122 VNGFFSAG 129 (251)
Q Consensus 122 ln~l~~~~ 129 (251)
+..+.+.+
T Consensus 197 ~~~l~~~g 204 (267)
T cd01536 197 VAALKAAG 204 (267)
T ss_pred HHHHHhcC
Confidence 99887543
No 260
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=37.98 E-value=2.7e+02 Score=24.18 Aligned_cols=78 Identities=12% Similarity=0.053 Sum_probs=45.3
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEE--EecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICE--SLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~--~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
..+++.+|....+ .+....+.+...+++.. .++.. .......+....+.++...+.|.|++.+-+.-...++
T Consensus 135 g~~~v~~l~~~~~---~~~~~~~~~~~~~~~~G---~~~~~~~~~~~~~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~i 208 (336)
T cd06326 135 GLKRIAVFYQDDA---FGKDGLAGVEKALAARG---LKPVATASYERNTADVAAAVAQLAAARPQAVIMVGAYKAAAAFI 208 (336)
T ss_pred CCceEEEEEecCc---chHHHHHHHHHHHHHcC---CCeEEEEeecCCcccHHHHHHHHHhcCCCEEEEEcCcHHHHHHH
Confidence 4688888865332 23344555666666542 22211 1222235667777887777788777666444567788
Q ss_pred HHHHhC
Q 025520 123 NGFFSA 128 (251)
Q Consensus 123 n~l~~~ 128 (251)
..+.+.
T Consensus 209 ~~~~~~ 214 (336)
T cd06326 209 RALRKA 214 (336)
T ss_pred HHHHhc
Confidence 887654
No 261
>COG1744 Med Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]
Probab=37.92 E-value=2e+02 Score=26.33 Aligned_cols=82 Identities=9% Similarity=0.169 Sum_probs=47.2
Q ss_pred CCCCCeEEEEE-cCCCCCCChhhHHHHHHHHHHhhcCCCccEEE---EecCCccHHHHHHHHHHHcCCCEEEEEeCCchH
Q 025520 43 SSRRRDLVFVV-NPRGASGRTGKEWKKLLPYLRSRLSVDCNICE---SLTSGPSHAIDITREAIKEGADAVIAVGGDGTL 118 (251)
Q Consensus 43 ~~~~~~i~viv-NP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~---~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl 118 (251)
....+++.++. +|...++-.+..++-++ .+++.++..+.... .......+..+..+++.+++++.|+..|- -.
T Consensus 32 ~~~~~~~~~~~~g~~~D~s~n~~~~~g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~g~~lI~~~gf--~~ 108 (345)
T COG1744 32 AGKKKKVAVIDVGGIDDKSFNQSAYEGLL-KAKKELGLKVETYYWEYVQSDSEADYERALRALAEDGYDLIFGTGF--AF 108 (345)
T ss_pred cccceEEEEEecCCCCccchhHHHHHHHH-HHHHHhCCceEeeeeeecCCcchhHHHHHHHHHHhcCCCEEEEecc--ch
Confidence 44455555555 77766665555555443 44444332222211 22333567888888888899988886663 45
Q ss_pred HHHHHHHHh
Q 025520 119 HEVVNGFFS 127 (251)
Q Consensus 119 ~~vln~l~~ 127 (251)
.+.+..+..
T Consensus 109 ~d~~~~va~ 117 (345)
T COG1744 109 SDALEKVAA 117 (345)
T ss_pred hhHHHHHHH
Confidence 666666654
No 262
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=37.87 E-value=44 Score=24.75 Aligned_cols=50 Identities=18% Similarity=0.063 Sum_probs=25.8
Q ss_pred HHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEe-CCchHHHHHH
Q 025520 69 LLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVG-GDGTLHEVVN 123 (251)
Q Consensus 69 i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~G-GDGTl~~vln 123 (251)
+...|++. ++++..+.. ..+..++.+.+.+.++|.|.+.. =..++..+..
T Consensus 20 la~~l~~~---G~~v~~~d~--~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~ 70 (121)
T PF02310_consen 20 LAAYLRKA---GHEVDILDA--NVPPEELVEALRAERPDVVGISVSMTPNLPEAKR 70 (121)
T ss_dssp HHHHHHHT---TBEEEEEES--SB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHH
T ss_pred HHHHHHHC---CCeEEEECC--CCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHH
Confidence 34455553 344443322 22335556666666777777766 4555555443
No 263
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=37.66 E-value=2.2e+02 Score=23.86 Aligned_cols=46 Identities=13% Similarity=0.026 Sum_probs=27.9
Q ss_pred ccEEEEecCCc-cHHHHHHHHHHHcCCCEEEEEeCCch-HHHHHHHHH
Q 025520 81 CNICESLTSGP-SHAIDITREAIKEGADAVIAVGGDGT-LHEVVNGFF 126 (251)
Q Consensus 81 ~~~~~~~t~~~-~~a~~~~~~~~~~~~d~ivv~GGDGT-l~~vln~l~ 126 (251)
+++.+..+... ....++.+.+...+.|.|++.+.|.+ +.+.++.+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~l~~~~vDgiii~~~~~~~~~~~i~~~~ 82 (274)
T cd06311 35 VEFILVTASNDTEQQNAQQDLLINRKIDALVILPFESAPLTQPVAKAK 82 (274)
T ss_pred eEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHHH
Confidence 44444444322 22334455566678999999988865 456666664
No 264
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=37.63 E-value=1.9e+02 Score=22.25 Aligned_cols=75 Identities=15% Similarity=0.243 Sum_probs=41.3
Q ss_pred eEEEEE-cCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCC----------------ccHHHHHHHHHHHcCCCEEE
Q 025520 48 DLVFVV-NPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSG----------------PSHAIDITREAIKEGADAVI 110 (251)
Q Consensus 48 ~i~viv-NP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~----------------~~~a~~~~~~~~~~~~d~iv 110 (251)
++++|. .|+ .++.+....+.+...++.. +.+++++.... .++..++.+++. +.|.||
T Consensus 2 kilii~gS~r-~~~~t~~l~~~~~~~l~~~---g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~--~aD~iI 75 (152)
T PF03358_consen 2 KILIINGSPR-KNSNTRKLAEAVAEQLEEA---GAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLK--EADGII 75 (152)
T ss_dssp EEEEEESSSS-TTSHHHHHHHHHHHHHHHT---TEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHH--HSSEEE
T ss_pred EEEEEECcCC-CCCHHHHHHHHHHHHHHHc---CCEEEEEeccccchhhcccccccccCCcHHHHHHHhcee--cCCeEE
Confidence 455555 333 3466667777777777664 34555554332 334445555554 467666
Q ss_pred EEe--CCchHHHHHHHHHhC
Q 025520 111 AVG--GDGTLHEVVNGFFSA 128 (251)
Q Consensus 111 v~G--GDGTl~~vln~l~~~ 128 (251)
++- =-|+++..+..++++
T Consensus 76 ~~sP~y~~~~s~~lK~~lD~ 95 (152)
T PF03358_consen 76 FASPVYNGSVSGQLKNFLDR 95 (152)
T ss_dssp EEEEEBTTBE-HHHHHHHHT
T ss_pred EeecEEcCcCChhhhHHHHH
Confidence 654 256666666666653
No 265
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=37.60 E-value=2.3e+02 Score=24.56 Aligned_cols=78 Identities=13% Similarity=0.138 Sum_probs=43.4
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEe-cCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL-TSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~-t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
-..+++.+|++...+ ...++.+...++.. +.++.... .....+...++.++...+.|+|++.+-......++
T Consensus 125 ~~w~~vaii~~~~~~----~~~l~~~~~~~~~~---g~~v~~~~~~~~~~d~~~~l~~i~~~~~d~Vi~~~~~~~~~~i~ 197 (324)
T cd06368 125 FGWRKFVYIYDSDEG----LLRLQELLDALSPK---GIQVTVRRLDDDTDMYRPLLKEIKREKERRIILDCSPERLKEFL 197 (324)
T ss_pred cCCCEEEEEECCcHh----HHHHHHHHHhhccC---CceEEEEEecCCchHHHHHHHHHhhccCceEEEECCHHHHHHHH
Confidence 357899999865432 22333333333332 22332211 11222567777777777888888877665666677
Q ss_pred HHHHhC
Q 025520 123 NGFFSA 128 (251)
Q Consensus 123 n~l~~~ 128 (251)
..+.+.
T Consensus 198 ~qa~~~ 203 (324)
T cd06368 198 EQAVEV 203 (324)
T ss_pred HHHHHh
Confidence 666543
No 266
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=37.46 E-value=60 Score=27.48 Aligned_cols=54 Identities=17% Similarity=0.220 Sum_probs=36.7
Q ss_pred cHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCCh
Q 025520 92 SHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTG 153 (251)
Q Consensus 92 ~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTg 153 (251)
++..++++++...+.|.|++.|=||.-.+-+..++..- ....++|+.+.|....
T Consensus 11 e~~~~ia~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~i--------k~~~~lPvilfp~~~~ 64 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMVGGSLGIVESNLDQTVKKI--------KKITNLPVILFPGNVN 64 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHH--------HhhcCCCEEEECCCcc
Confidence 56667778888889999999999976544444443211 0124789998886653
No 267
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=36.97 E-value=71 Score=27.00 Aligned_cols=47 Identities=32% Similarity=0.450 Sum_probs=26.0
Q ss_pred HHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCCh
Q 025520 94 AIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTG 153 (251)
Q Consensus 94 a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTg 153 (251)
++++.+++.+.+ ..|+..||-|..-.+..+... .....+|++|-.-.
T Consensus 36 a~~lg~~la~~g-~~V~tGG~~GiMea~~~gA~~------------~gg~~vGi~p~~~~ 82 (205)
T COG1611 36 ARELGRELAKRG-LLVITGGGPGVMEAVARGALE------------AGGLVVGILPGLLH 82 (205)
T ss_pred HHHHHHHHHhCC-cEEEeCCchhhhhHHHHHHHH------------cCCeEEEecCCCch
Confidence 445555665555 344444455555555555543 23678888886543
No 268
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=36.87 E-value=1.7e+02 Score=22.32 Aligned_cols=56 Identities=25% Similarity=0.294 Sum_probs=29.4
Q ss_pred HHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCc-----hHHHHHHHHH
Q 025520 69 LLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDG-----TLHEVVNGFF 126 (251)
Q Consensus 69 i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDG-----Tl~~vln~l~ 126 (251)
+...|++.. .......+..+++++..+..+++.. ++|.||..||=| ...+++..+.
T Consensus 23 l~~~l~~~G-~~~~~~~~v~Dd~~~I~~~l~~~~~-~~dliittGG~g~g~~D~t~~~l~~~~ 83 (135)
T smart00852 23 LAELLTELG-IEVTRYVIVPDDKEAIKEALREALE-RADLVITTGGTGPGPDDVTPEAVAEAL 83 (135)
T ss_pred HHHHHHHCC-CeEEEEEEeCCCHHHHHHHHHHHHh-CCCEEEEcCCCCCCCCcCcHHHHHHHh
Confidence 344555542 2222222333444455555555544 699999999965 3344554443
No 269
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=36.69 E-value=2.5e+02 Score=23.49 Aligned_cols=47 Identities=17% Similarity=0.121 Sum_probs=28.9
Q ss_pred CccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCch-HHHHHHHHH
Q 025520 80 DCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGT-LHEVVNGFF 126 (251)
Q Consensus 80 ~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGT-l~~vln~l~ 126 (251)
++++.+..+.. .....+..+.+...+.|.|++.+.+.. +...++.+.
T Consensus 29 g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~i~~~~ 77 (273)
T cd06309 29 GFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPVVETGWDPVLKEAK 77 (273)
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCccccchHHHHHHH
Confidence 45554444332 223335566777788999999887754 345666664
No 270
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=36.62 E-value=1.8e+02 Score=23.04 Aligned_cols=66 Identities=21% Similarity=0.132 Sum_probs=38.5
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHc-CCCEEEEEe
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKE-GADAVIAVG 113 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~-~~d~ivv~G 113 (251)
.|+.|+.-.-. ..-.++..+.....|....-..-++.++.....-|.--.++++.+. ++|.+++.|
T Consensus 4 ~ri~IV~s~~n-~~i~~~ll~~a~~~l~~~g~~~~~i~~~~VPGa~ElP~a~~~l~~~~~~Davi~lG 70 (144)
T PF00885_consen 4 LRIAIVVSRFN-EEITDRLLEGALEELKRHGVAEENIEVIRVPGAFELPLAAKRLAESGRYDAVIALG 70 (144)
T ss_dssp EEEEEEEESTT-HHHHHHHHHHHHHHHHHTTTTGGCEEEEEESSGGGHHHHHHHHHHCSTESEEEEEE
T ss_pred CEEEEEEEecc-HHHHHHHHHHHHHHHHHcCCCccceEEEEcCCHHHHHHHHHHHhcccCccEEEEec
Confidence 35566553221 1112233334445565542212256667777777888888887765 599999999
No 271
>PRK06455 riboflavin synthase; Provisional
Probab=36.29 E-value=2.3e+02 Score=22.92 Aligned_cols=77 Identities=19% Similarity=0.170 Sum_probs=44.3
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHH-HcCCCEEEEEe--CCch-----
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAI-KEGADAVIAVG--GDGT----- 117 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~-~~~~d~ivv~G--GDGT----- 117 (251)
++++.|+.-.-+. ....+.....|+++. ...++.++.....-+.--.++++. ..++|.||+.| |+|-
T Consensus 1 ~~kigIV~s~fn~----~~L~~gAi~~L~~~g-~~~~I~v~~VPGa~ELP~aakkL~~~~~yDaVIaLG~VG~t~h~d~V 75 (155)
T PRK06455 1 MMKIGIADTTFAR----VDMGSAAIDELRKLD-PSAKIIRYTVPGIKDLPVAAKKLIEEEGCDIVMALGMPGPTEKDKYC 75 (155)
T ss_pred CcEEEEEEEecch----HHHHHHHHHHHHhcC-CCCceEEEECCCHHHHHHHHHHHHhcCCCCEEEEecceeccCcchhH
Confidence 3566666644321 133344556677643 334565555555556666677776 35799999887 4333
Q ss_pred HHHHHHHHHh
Q 025520 118 LHEVVNGFFS 127 (251)
Q Consensus 118 l~~vln~l~~ 127 (251)
-+++..+|..
T Consensus 76 a~~vS~GL~~ 85 (155)
T PRK06455 76 AHEASIGLIM 85 (155)
T ss_pred HHHHHHHHHH
Confidence 3555566654
No 272
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=36.27 E-value=1.5e+02 Score=26.43 Aligned_cols=50 Identities=22% Similarity=0.314 Sum_probs=32.4
Q ss_pred HHHHHHHHhhcCCCccEEEEec--------CCccHHHHHHHHHHHcCCCEEEEEeCCc
Q 025520 67 KKLLPYLRSRLSVDCNICESLT--------SGPSHAIDITREAIKEGADAVIAVGGDG 116 (251)
Q Consensus 67 ~~i~~~L~~~~~~~~~~~~~~t--------~~~~~a~~~~~~~~~~~~d~ivv~GGDG 116 (251)
.+++..+++.++..+.+.+... .+.+++.++++.+.+.+.|.|-+.+|+.
T Consensus 195 ~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~ 252 (327)
T cd02803 195 LEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSY 252 (327)
T ss_pred HHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCC
Confidence 3455566666544433333222 1345778889998888999999988874
No 273
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=36.22 E-value=1e+02 Score=30.02 Aligned_cols=43 Identities=19% Similarity=0.178 Sum_probs=33.5
Q ss_pred ccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHH
Q 025520 81 CNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFF 126 (251)
Q Consensus 81 ~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~ 126 (251)
+++..+.-.+.+++...++++.+.|+++|| |||+..+.+..+.
T Consensus 131 ~~i~~~~~~~~~e~~~~v~~lk~~G~~~vv---G~~~~~~~A~~~g 173 (538)
T PRK15424 131 LRIEQRSYVTEEDARGQINELKANGIEAVV---GAGLITDLAEEAG 173 (538)
T ss_pred CceEEEEecCHHHHHHHHHHHHHCCCCEEE---cCchHHHHHHHhC
Confidence 445556667788999999999999999888 7788877776654
No 274
>PRK05568 flavodoxin; Provisional
Probab=36.04 E-value=1.9e+02 Score=21.95 Aligned_cols=69 Identities=14% Similarity=0.130 Sum_probs=39.3
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeC--------Cch
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGG--------DGT 117 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GG--------DGT 117 (251)
|+++.|++-.. .|++++..+.+...+... +.++.++...... .. ++ .++|.|+++-. ++.
T Consensus 1 m~~~~IvY~S~--~GnT~~~a~~i~~~~~~~---g~~v~~~~~~~~~-~~----~~--~~~d~iilgsp~y~~~~~~~~~ 68 (142)
T PRK05568 1 MKKINIIYWSG--TGNTEAMANLIAEGAKEN---GAEVKLLNVSEAS-VD----DV--KGADVVALGSPAMGDEVLEEGE 68 (142)
T ss_pred CCeEEEEEECC--CchHHHHHHHHHHHHHHC---CCeEEEEECCCCC-HH----HH--HhCCEEEEECCccCcccccchh
Confidence 46788888654 566777777777666543 3444444333322 11 22 35787776542 245
Q ss_pred HHHHHHHHH
Q 025520 118 LHEVVNGFF 126 (251)
Q Consensus 118 l~~vln~l~ 126 (251)
+...++.+.
T Consensus 69 ~~~f~~~~~ 77 (142)
T PRK05568 69 MEPFVESIS 77 (142)
T ss_pred HHHHHHHhh
Confidence 666766653
No 275
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=36.02 E-value=3e+02 Score=24.35 Aligned_cols=74 Identities=14% Similarity=0.141 Sum_probs=38.1
Q ss_pred eEEEEEcCCCCCCCh----hhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHH
Q 025520 48 DLVFVVNPRGASGRT----GKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVN 123 (251)
Q Consensus 48 ~i~vivNP~sg~g~~----~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln 123 (251)
+-+|++||.|..+.. .+.|.++.+.|.+. +.++ +.+..+++ ++.++++.....+.++-..|.=+|.+++.
T Consensus 174 ~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~---~~~i--vl~G~~~e-~~~~~~i~~~~~~~~~~l~g~~sL~el~a 247 (334)
T TIGR02195 174 RPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQ---GYQV--VLFGSAKD-HPAGNEIEALLPGELRNLAGETSLDEAVD 247 (334)
T ss_pred CCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHC---CCEE--EEEEChhh-HHHHHHHHHhCCcccccCCCCCCHHHHHH
Confidence 346888997742222 22455555555432 2344 34444444 33445554332233444566668888887
Q ss_pred HHHh
Q 025520 124 GFFS 127 (251)
Q Consensus 124 ~l~~ 127 (251)
-+..
T Consensus 248 li~~ 251 (334)
T TIGR02195 248 LIAL 251 (334)
T ss_pred HHHh
Confidence 6643
No 276
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=35.78 E-value=2.8e+02 Score=25.48 Aligned_cols=77 Identities=21% Similarity=0.247 Sum_probs=46.0
Q ss_pred CCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHH-----------------HcCCCEEEEEeCCchHHH
Q 025520 58 ASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAI-----------------KEGADAVIAVGGDGTLHE 120 (251)
Q Consensus 58 g~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~-----------------~~~~d~ivv~GGDGTl~~ 120 (251)
|..++.+.++++.+.+...+.. ++.++......+..+..+.+. -...|.||.=.|=.||.|
T Consensus 190 GGS~Ga~~ln~~v~~~~~~l~~--~~~v~~~~G~~~~~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADLvIsRaGa~Ti~E 267 (357)
T COG0707 190 GGSQGAKALNDLVPEALAKLAN--RIQVIHQTGKNDLEELKSAYNELGVVRVLPFIDDMAALLAAADLVISRAGALTIAE 267 (357)
T ss_pred CCcchhHHHHHHHHHHHHHhhh--CeEEEEEcCcchHHHHHHHHhhcCcEEEeeHHhhHHHHHHhccEEEeCCcccHHHH
Confidence 3445566677766554443322 233344445554333333221 125789999999999999
Q ss_pred HHHHHHhCCcccccccccccCCceEEEecCCCh
Q 025520 121 VVNGFFSAGKLVTNHNRESAHSTALGLIPLGTG 153 (251)
Q Consensus 121 vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTg 153 (251)
++-. ..|..++|..-+
T Consensus 268 ~~a~-----------------g~P~IliP~p~~ 283 (357)
T COG0707 268 LLAL-----------------GVPAILVPYPPG 283 (357)
T ss_pred HHHh-----------------CCCEEEeCCCCC
Confidence 9862 467777777766
No 277
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=35.72 E-value=2.1e+02 Score=22.21 Aligned_cols=71 Identities=11% Similarity=0.026 Sum_probs=46.6
Q ss_pred EEEEEcCCCCCCChhhHHHHHH-HHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHh
Q 025520 49 LVFVVNPRGASGRTGKEWKKLL-PYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFS 127 (251)
Q Consensus 49 i~vivNP~sg~g~~~~~~~~i~-~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~ 127 (251)
-.++.|+.. ...+.-+++. ..|+.. ++ +++.........++++.+.+++.|.|++++=|+|--+.+..+++
T Consensus 4 ~v~~a~~g~---D~Hd~g~~iv~~~l~~~---Gf--eVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~ 75 (132)
T TIGR00640 4 RILVAKMGQ---DGHDRGAKVIATAYADL---GF--DVDVGPLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRK 75 (132)
T ss_pred EEEEEeeCC---CccHHHHHHHHHHHHhC---Cc--EEEECCCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHH
Confidence 356667764 2233334443 345542 34 44556555566778888888999999999999987777777764
No 278
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=35.71 E-value=2.8e+02 Score=25.07 Aligned_cols=13 Identities=38% Similarity=0.664 Sum_probs=8.4
Q ss_pred hhHHHHHHHHHHh
Q 025520 221 LCYVIGALQAFMG 233 (251)
Q Consensus 221 l~Y~~~~~~~~~~ 233 (251)
+.++..+++.-+.
T Consensus 294 ~~~~~~glr~~~~ 306 (325)
T cd00381 294 LPQLVGGLRSSMG 306 (325)
T ss_pred HHHHHHHHHHHHH
Confidence 4677777776553
No 279
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=35.58 E-value=1.7e+02 Score=27.39 Aligned_cols=71 Identities=10% Similarity=0.045 Sum_probs=38.7
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhh----cCC---CccEEEEecCCccHHH--HHHHHHHHcCCCEEEEEeCCc
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSR----LSV---DCNICESLTSGPSHAI--DITREAIKEGADAVIAVGGDG 116 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~----~~~---~~~~~~~~t~~~~~a~--~~~~~~~~~~~d~ivv~GGDG 116 (251)
.+++.++.-.. .....|.++...|++. .+. .-++.++.|-...... +.+++++.+..|+++|+||--
T Consensus 224 ~~kv~vvsQTT----~~~~~~~~iv~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~~La~~~vD~miVVGG~n 299 (387)
T PRK13371 224 LERVGVANQTT----MLKSETEEIGKLFERTMLRKYGPANLNEHFLSFNTICDATQERQDAMFSLVEEPLDLMVVIGGYN 299 (387)
T ss_pred CccEEEEECCC----CcHHHHHHHHHHHHHhhhhhcCCccccccccccCCcchhHHHHHHHHHHHhhcCCCEEEEECCCC
Confidence 46777665443 3456677777777542 110 0023333343332222 224455555799999999987
Q ss_pred hHHH
Q 025520 117 TLHE 120 (251)
Q Consensus 117 Tl~~ 120 (251)
+-|.
T Consensus 300 SSNT 303 (387)
T PRK13371 300 SSNT 303 (387)
T ss_pred CccH
Confidence 7553
No 280
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=35.48 E-value=3.3e+02 Score=24.84 Aligned_cols=132 Identities=15% Similarity=0.188 Sum_probs=78.8
Q ss_pred CCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 43 SSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 43 ~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
.+..|++.+++||...+ .....+.+...+++. ++++.+...++..+....++.+. ...|+|++. =|-|+....
T Consensus 156 ~Pnak~Igv~Y~p~E~n--s~~l~eelk~~A~~~---Gl~vve~~v~~~ndi~~a~~~l~-g~~d~i~~p-~dn~i~s~~ 228 (322)
T COG2984 156 LPNAKSIGVLYNPGEAN--SVSLVEELKKEARKA---GLEVVEAAVTSVNDIPRAVQALL-GKVDVIYIP-TDNLIVSAI 228 (322)
T ss_pred CCCCeeEEEEeCCCCcc--cHHHHHHHHHHHHHC---CCEEEEEecCcccccHHHHHHhc-CCCcEEEEe-cchHHHHHH
Confidence 46678999999998743 345556666666663 56766655555555555555544 566776654 699999999
Q ss_pred HHHHhCCcccccccccccCCceEEEecCCChhHHhh-----hcCCCC-----CHHHHHHHHHcCce-eeeeEEEEEcCCC
Q 025520 123 NGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFAR-----TFGWRN-----DPYEAVERIAKGVR-SWVDVGVINGETG 191 (251)
Q Consensus 123 n~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~-----~lg~~~-----~~~~al~~i~~g~~-~~iDvg~v~~~~~ 191 (251)
+.|+... ...++||- ++..++.+ ++|+.. ..-+.+..|++|.. ..+.+....+
T Consensus 229 ~~l~~~a---------~~~kiPli----~sd~~~V~~Ga~aA~gvdy~~~G~qtg~~v~~ILkG~~p~dip~~~~~~--- 292 (322)
T COG2984 229 ESLLQVA---------NKAKIPLI----ASDTSSVKEGALAALGVDYKDLGKQTGEMVVKILKGKKPKDIPVSVAAG--- 292 (322)
T ss_pred HHHHHHH---------HHhCCCee----cCCHHHHhcCcceeeccCHHHHHHHHHHHHHHHHcCCCccccCcccccc---
Confidence 9988532 24455552 34445544 344431 12334677788753 4455544433
Q ss_pred CceEEEE
Q 025520 192 EPHYFIN 198 (251)
Q Consensus 192 ~~~~f~n 198 (251)
..+++|
T Consensus 293 -~~~~iN 298 (322)
T COG2984 293 -FKLVIN 298 (322)
T ss_pred -ceEEEc
Confidence 245655
No 281
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=35.31 E-value=2.5e+02 Score=25.15 Aligned_cols=72 Identities=13% Similarity=0.120 Sum_probs=37.7
Q ss_pred EEEEEcCCCCCCCh----hhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHc----CCCEEEEEeCCchHHH
Q 025520 49 LVFVVNPRGASGRT----GKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKE----GADAVIAVGGDGTLHE 120 (251)
Q Consensus 49 i~vivNP~sg~g~~----~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~----~~d~ivv~GGDGTl~~ 120 (251)
-+|.+||.|..+.. ...|.++...|.. .++.+ +.+..++|. +.++++.+. ....++...|+-||.+
T Consensus 181 ~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~---~~~~v--vl~Gg~~e~-~~~~~i~~~~~~~~~~~~~~l~g~~sL~e 254 (348)
T PRK10916 181 PIIGFCPGAEFGPAKRWPHYHYAELAQQLID---EGYQV--VLFGSAKDH-EAGNEILAALNTEQQAWCRNLAGETQLEQ 254 (348)
T ss_pred CEEEEeCCCCCccccCCCHHHHHHHHHHHHH---CCCeE--EEEeCHHhH-HHHHHHHHhcccccccceeeccCCCCHHH
Confidence 46888997632222 1234445444432 23343 444555443 334444322 1123456678999999
Q ss_pred HHHHHH
Q 025520 121 VVNGFF 126 (251)
Q Consensus 121 vln~l~ 126 (251)
++.-+-
T Consensus 255 l~ali~ 260 (348)
T PRK10916 255 AVILIA 260 (348)
T ss_pred HHHHHH
Confidence 998664
No 282
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=35.28 E-value=73 Score=31.86 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=23.2
Q ss_pred HHHHHHHHHHcCCCEEEEEeCCch-------HHHHHHHHHh
Q 025520 94 AIDITREAIKEGADAVIAVGGDGT-------LHEVVNGFFS 127 (251)
Q Consensus 94 a~~~~~~~~~~~~d~ivv~GGDGT-------l~~vln~l~~ 127 (251)
..++...+.+.+.+.|+|+|||+| ..++-..+++
T Consensus 220 ~~~~l~~~r~~Gln~viVigG~~~~~ga~i~ae~vk~~~~k 260 (666)
T KOG2440|consen 220 LCEILDSIRKRGLNIVIVIGGAIDNTGAPIIAEEVKERKLK 260 (666)
T ss_pred HHHHHHHHHhCCCCEEEEEecccCCCCCcccHHHHHHhhhh
Confidence 444455555678999999999997 4455555443
No 283
>KOG3167 consensus Box H/ACA snoRNP component, involved in ribosomal RNA pseudouridinylation [RNA processing and modification]
Probab=35.23 E-value=43 Score=26.57 Aligned_cols=86 Identities=13% Similarity=0.248 Sum_probs=50.5
Q ss_pred CCCCCCCCCCCCCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEE
Q 025520 32 SPNPISHGAASSSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIA 111 (251)
Q Consensus 32 ~~~~~~~~~~~~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv 111 (251)
.+++..+++...+.-..+++.+||.+..--+++.-+++.+.+++..... .+ -....-+++....+..-|+|
T Consensus 10 ~~~a~~~~~s~e~~Y~~~l~~~~PIAkPLA~kkl~kk~~KlvkKa~k~k-~l--------rrGvKevqK~vrkGeKGl~V 80 (153)
T KOG3167|consen 10 GSDAKGEKTSGEDEYQALLIAVNPIAKPLASKKLAKKVYKLVKKAAKQK-GL--------RRGVKEVQKRVRKGEKGLCV 80 (153)
T ss_pred ccccccccccchhHHHHHHHhhcccccccccHHHHHHHHHHHHHHHhhh-hH--------HHHHHHHHHHHhcCCcceEE
Confidence 3344444444444446788888988754333344444555555542111 01 11122344555678889999
Q ss_pred EeCCchHHHHHHHHH
Q 025520 112 VGGDGTLHEVVNGFF 126 (251)
Q Consensus 112 ~GGDGTl~~vln~l~ 126 (251)
.-||=|=-+|+..|-
T Consensus 81 lAgd~sPiDvi~HlP 95 (153)
T KOG3167|consen 81 LAGDTSPIDVITHLP 95 (153)
T ss_pred EecCCccHHHHhccc
Confidence 999999999998763
No 284
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=35.12 E-value=2.8e+02 Score=25.72 Aligned_cols=74 Identities=19% Similarity=0.178 Sum_probs=40.4
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEE--EE----ecCCccHHHHHHHHHHHcCC---CEEEEEeCC
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNIC--ES----LTSGPSHAIDITREAIKEGA---DAVIAVGGD 115 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~--~~----~t~~~~~a~~~~~~~~~~~~---d~ivv~GGD 115 (251)
...+++|+.|+.=. .-..+++...|.... +++. ++ .+.+-+...++...+.+.+. +.||.+||
T Consensus 32 ~~~k~~ivtd~~v~----~~y~~~~~~~l~~~g---~~v~~~~lp~GE~~Ksl~~~~~i~~~ll~~~~~R~s~iialGG- 103 (360)
T COG0337 32 AGRKVAIVTDETVA----PLYLEKLLATLEAAG---VEVDSIVLPDGEEYKSLETLEKIYDALLEAGLDRKSTLIALGG- 103 (360)
T ss_pred cCCeEEEEECchhH----HHHHHHHHHHHHhcC---CeeeEEEeCCCcccccHHHHHHHHHHHHHcCCCCCcEEEEECC-
Confidence 34499999998642 223455666666542 3321 11 11222334444445554433 58888887
Q ss_pred chHHHHHHHHH
Q 025520 116 GTLHEVVNGFF 126 (251)
Q Consensus 116 GTl~~vln~l~ 126 (251)
|++.+++.=..
T Consensus 104 GvigDlaGF~A 114 (360)
T COG0337 104 GVIGDLAGFAA 114 (360)
T ss_pred hHHHHHHHHHH
Confidence 88888765443
No 285
>PRK05670 anthranilate synthase component II; Provisional
Probab=35.08 E-value=2e+02 Score=23.43 Aligned_cols=48 Identities=21% Similarity=0.183 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHH
Q 025520 65 EWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHE 120 (251)
Q Consensus 65 ~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~ 120 (251)
....+...|++. ++++.++.....+ ..++ ...++|.||+.||-|+..+
T Consensus 11 f~~~i~~~l~~~---g~~~~v~~~~~~~-~~~~----~~~~~dglIlsgGpg~~~d 58 (189)
T PRK05670 11 FTYNLVQYLGEL---GAEVVVYRNDEIT-LEEI----EALNPDAIVLSPGPGTPAE 58 (189)
T ss_pred hHHHHHHHHHHC---CCcEEEEECCCCC-HHHH----HhCCCCEEEEcCCCCChHH
Confidence 334456667664 3455444433221 2221 2235899999999999876
No 286
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=34.70 E-value=3.1e+02 Score=23.83 Aligned_cols=78 Identities=10% Similarity=0.046 Sum_probs=47.9
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEE--EEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNIC--ESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~--~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
..+++.+|+.-.. -+....+.+...+++. +.++. ........+....++++...++|.|++++.......++
T Consensus 136 ~~~~vail~~~~~---~g~~~~~~~~~~~~~~---G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~v~~~~~~~~~~~~~ 209 (312)
T cd06346 136 GYKSVATTYINND---YGVGLADAFTKAFEAL---GGTVTNVVAHEEGKSSYSSEVAAAAAGGPDALVVIGYPETGSGIL 209 (312)
T ss_pred CCCeEEEEEccCc---hhhHHHHHHHHHHHHc---CCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEecccchHHHHH
Confidence 4688888874322 2234444555566653 23332 22333345677788888888999998887666677777
Q ss_pred HHHHhC
Q 025520 123 NGFFSA 128 (251)
Q Consensus 123 n~l~~~ 128 (251)
+.+.+.
T Consensus 210 ~~~~~~ 215 (312)
T cd06346 210 RSAYEQ 215 (312)
T ss_pred HHHHHc
Confidence 777543
No 287
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=34.47 E-value=2e+02 Score=24.36 Aligned_cols=35 Identities=11% Similarity=0.031 Sum_probs=22.4
Q ss_pred CccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeC
Q 025520 80 DCNICESLTSGPSHAIDITREAIKEGADAVIAVGG 114 (251)
Q Consensus 80 ~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GG 114 (251)
++++.+..+....+..+..+++...+.|.|++.+-
T Consensus 32 gy~~~i~~~~~~~~~~~~i~~l~~~~vdgiI~~~~ 66 (265)
T cd06354 32 GIEYKYVESKSDADYEPNLEQLADAGYDLIVGVGF 66 (265)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHhCCCCEEEEcCc
Confidence 35555544444444456666777778999999864
No 288
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=34.08 E-value=1.1e+02 Score=29.73 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=32.7
Q ss_pred ccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHH
Q 025520 81 CNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (251)
Q Consensus 81 ~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l 125 (251)
+++..+...+.+++...++++.++|+++|| ||++..+.+..+
T Consensus 121 ~~i~~~~~~~~~e~~~~~~~l~~~G~~~vi---G~~~~~~~A~~~ 162 (526)
T TIGR02329 121 LDIVQRSYVTEEDARSCVNDLRARGIGAVV---GAGLITDLAEQA 162 (526)
T ss_pred CceEEEEecCHHHHHHHHHHHHHCCCCEEE---CChHHHHHHHHc
Confidence 455556667788999999999999999888 777777776654
No 289
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=34.01 E-value=1e+02 Score=24.05 Aligned_cols=38 Identities=29% Similarity=0.573 Sum_probs=22.1
Q ss_pred ecCCccHHHHHHHHHHHcCCCEEEEEeCCch-----HHHHHHHH
Q 025520 87 LTSGPSHAIDITREAIKEGADAVIAVGGDGT-----LHEVVNGF 125 (251)
Q Consensus 87 ~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGT-----l~~vln~l 125 (251)
..++.++..+..+++. +++|.||+.||=|. ..+++..+
T Consensus 49 v~Dd~~~i~~~l~~~~-~~~DliIttGG~g~g~~D~t~~ai~~~ 91 (144)
T TIGR00177 49 VPDDPEEIREILRKAV-DEADVVLTTGGTGVGPRDVTPEALEEL 91 (144)
T ss_pred cCCCHHHHHHHHHHHH-hCCCEEEECCCCCCCCCccHHHHHHHh
Confidence 3444444444444443 37999999998654 34455544
No 290
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=33.96 E-value=1.6e+02 Score=24.72 Aligned_cols=65 Identities=9% Similarity=0.094 Sum_probs=31.5
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccH--HHHHHHHHHHcCCCEEEEEeCCc
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSH--AIDITREAIKEGADAVIAVGGDG 116 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~--a~~~~~~~~~~~~d~ivv~GGDG 116 (251)
...++.+|--+. + . .....+++.+.+++.. . .++......+.+. ..++.+.+ .+.|.|++.|||=
T Consensus 28 ~~~~i~~iptA~-~-~-~~~~~~~~~~~~~~lG-~-~~v~~~~~~~~~~a~~~~~~~~l--~~ad~I~~~GG~~ 94 (217)
T cd03145 28 AGARIVVIPAAS-E-E-PAEVGEEYRDVFERLG-A-REVEVLVIDSREAANDPEVVARL--RDADGIFFTGGDQ 94 (217)
T ss_pred CCCcEEEEeCCC-c-C-hhHHHHHHHHHHHHcC-C-ceeEEeccCChHHcCCHHHHHHH--HhCCEEEEeCCcH
Confidence 345565553332 2 2 2444566666676642 1 1233333332111 11222322 3689999999985
No 291
>PRK04155 chaperone protein HchA; Provisional
Probab=33.73 E-value=3.4e+02 Score=24.11 Aligned_cols=17 Identities=35% Similarity=0.493 Sum_probs=13.9
Q ss_pred HcCCCEEEEEeCCchHH
Q 025520 103 KEGADAVIAVGGDGTLH 119 (251)
Q Consensus 103 ~~~~d~ivv~GGDGTl~ 119 (251)
.+.||.|++.||=|...
T Consensus 145 ~~dYDaV~iPGG~g~~~ 161 (287)
T PRK04155 145 DSDYAAVFIPGGHGALI 161 (287)
T ss_pred cccccEEEECCCCchHH
Confidence 35799999999988744
No 292
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=33.65 E-value=1.8e+02 Score=23.66 Aligned_cols=46 Identities=26% Similarity=0.265 Sum_probs=24.7
Q ss_pred HHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCc
Q 025520 69 LLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDG 116 (251)
Q Consensus 69 i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDG 116 (251)
+...|.... .......+..++++...+..+++. +.+|+|++.||=|
T Consensus 24 l~~~L~~~G-~~v~~~~~v~Dd~~~I~~~l~~~~-~~~dlVIttGG~G 69 (170)
T cd00885 24 LAKELAELG-IEVYRVTVVGDDEDRIAEALRRAS-ERADLVITTGGLG 69 (170)
T ss_pred HHHHHHHCC-CEEEEEEEeCCCHHHHHHHHHHHH-hCCCEEEECCCCC
Confidence 445565532 222222234444444445555544 3689999999955
No 293
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=33.56 E-value=3.5e+02 Score=24.21 Aligned_cols=66 Identities=15% Similarity=0.169 Sum_probs=41.2
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEe
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSG-PSHAIDITREAIKEGADAVIAVG 113 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~G 113 (251)
++.+-+.+|+...+. --.......++..++.. ++++.+..+.. ++...+..+.+...+.|-||+.|
T Consensus 56 ~~s~~Ig~i~p~~~~-~~~~~i~~gi~~~~~~~---gy~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~ 122 (333)
T COG1609 56 GRTKTIGLVVPDITN-PFFAEILKGIEEAAREA---GYSLLLANTDDDPEKEREYLETLLQKRVDGLILLG 122 (333)
T ss_pred CCCCEEEEEeCCCCC-chHHHHHHHHHHHHHHc---CCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 366788888874443 22234444455555553 46666666654 44455556667778999999999
No 294
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=33.28 E-value=1.4e+02 Score=26.40 Aligned_cols=46 Identities=13% Similarity=0.131 Sum_probs=31.1
Q ss_pred CccEEEEecCC--ccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHh
Q 025520 80 DCNICESLTSG--PSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFS 127 (251)
Q Consensus 80 ~~~~~~~~t~~--~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~ 127 (251)
.+++...+... ..+..+.++++..+++|.|++.|.+ ..+.+..+..
T Consensus 34 ~i~~~~~e~~~~~~~~~~~~~~~~~~~g~dlIi~~g~~--~~~~~~~vA~ 81 (306)
T PF02608_consen 34 GIEIIYVENVPETDADYEEAIRQLADQGYDLIIGHGFE--YSDALQEVAK 81 (306)
T ss_dssp TEEEEEEES-S-TCHHHHHHHHHHHHTT-SEEEEESGG--GHHHHHHHHT
T ss_pred CceEEEEecCCccHHHHHHHHHHHHHcCCCEEEEccHH--HHHHHHHHHH
Confidence 45555555544 6788888899988999999987743 4466666654
No 295
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=32.99 E-value=3.3e+02 Score=24.40 Aligned_cols=79 Identities=13% Similarity=0.155 Sum_probs=47.1
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEE--EEecCC--ccHHHHHHHHHHHcCCCEEEEEeCCchHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNIC--ESLTSG--PSHAIDITREAIKEGADAVIAVGGDGTLHE 120 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~--~~~t~~--~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~ 120 (251)
..+++.|+.+-... .+....+.+...++.. +.++. ...... ..+...+++++...+ |+|++++.......
T Consensus 136 ~~~~v~ii~~~~~~--~g~~~~~~~~~~~~~~---G~~v~~~~~~~~~~~~~d~~~~l~~i~~~~-~vii~~~~~~~~~~ 209 (389)
T cd06352 136 NWHVAVVVYSDDSE--NCFFTLEALEAALREF---NLTVSHVVFMEDNSGAEDLLEILQDIKRRS-RIIIMCGSSEDVRE 209 (389)
T ss_pred CceEEEEEEecCCc--cHHHHHHHHHHHHHhc---CCeEEEEEEecCCccchhHHHHHHHhhhcc-eEEEEECCHHHHHH
Confidence 35777777765542 2233444555566543 23322 222222 356666777776655 88888888788888
Q ss_pred HHHHHHhCC
Q 025520 121 VVNGFFSAG 129 (251)
Q Consensus 121 vln~l~~~~ 129 (251)
++..+...+
T Consensus 210 ~l~q~~~~g 218 (389)
T cd06352 210 LLLAAHDLG 218 (389)
T ss_pred HHHHHHHcC
Confidence 888887543
No 296
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=32.97 E-value=2.8e+02 Score=22.88 Aligned_cols=65 Identities=15% Similarity=0.106 Sum_probs=33.4
Q ss_pred EEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCc-cHHHHHHHHHHHcCCCEEEEEeCCch
Q 025520 49 LVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGP-SHAIDITREAIKEGADAVIAVGGDGT 117 (251)
Q Consensus 49 i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~-~~a~~~~~~~~~~~~d~ivv~GGDGT 117 (251)
+.+++ |...+.--......++..++.. ++++....+... ....++.+.+...+.|.|++.+.+-+
T Consensus 2 i~~v~-~~~~~~~~~~~~~~i~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~ 67 (267)
T cd06284 2 ILVLV-PDIANPFFSEILKGIEDEAREA---GYGVLLGDTRSDPEREQEYLDLLRRKQADGIILLDGSLP 67 (267)
T ss_pred EEEEE-CCCCCccHHHHHHHHHHHHHHc---CCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 34555 4432222223333344444442 356554444332 22345556666778999999887644
No 297
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=32.94 E-value=3.2e+02 Score=23.57 Aligned_cols=78 Identities=6% Similarity=0.030 Sum_probs=46.5
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEE--EecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICE--SLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~--~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
..+++.+|+...+..+ ....+.+...++.. +.++.. .......+....++++...+.|.|++.+....+..++
T Consensus 134 ~~~~v~ii~~~~~~~~--~~~~~~~~~~~~~~---g~~v~~~~~~~~~~~d~~~~~~~~~~~~~d~i~~~~~~~~~~~~~ 208 (334)
T cd06347 134 KAKKAAVLYDNSSDYS--KGLAKAFKEAFKKL---GGEIVAEETFNAGDTDFSAQLTKIKAKNPDVIFLPGYYTEVGLIA 208 (334)
T ss_pred CCcEEEEEEeCCCchh--HHHHHHHHHHHHHc---CCEEEEEEEecCCCCcHHHHHHHHHhcCCCEEEEcCchhhHHHHH
Confidence 4678888884432212 23334445555543 233321 2233445677888888888899988887777777777
Q ss_pred HHHHh
Q 025520 123 NGFFS 127 (251)
Q Consensus 123 n~l~~ 127 (251)
..+..
T Consensus 209 ~~~~~ 213 (334)
T cd06347 209 KQARE 213 (334)
T ss_pred HHHHH
Confidence 76654
No 298
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=32.91 E-value=2.9e+02 Score=22.96 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=24.4
Q ss_pred CccEEEEecC-CccHHHHHHHHHHHcCCCEEEEEeCCch
Q 025520 80 DCNICESLTS-GPSHAIDITREAIKEGADAVIAVGGDGT 117 (251)
Q Consensus 80 ~~~~~~~~t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGT 117 (251)
++++.+..+. +++...+..+.+...+.|.|++.+.|..
T Consensus 29 g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~ 67 (269)
T cd06275 29 GYNLILCNTEGDPERQRSYLRMLAQKRVDGLLVMCSEYD 67 (269)
T ss_pred CCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 3555544443 2333445566777788999999998765
No 299
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=32.90 E-value=61 Score=30.27 Aligned_cols=33 Identities=42% Similarity=0.529 Sum_probs=28.5
Q ss_pred HcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCC
Q 025520 103 KEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGT 152 (251)
Q Consensus 103 ~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GT 152 (251)
...+|++|.-||=||+.+.+. ..+|+-++|.+.
T Consensus 298 l~~ad~vI~hGG~gtt~eaL~-----------------~gvP~vv~P~~~ 330 (406)
T COG1819 298 LPRADAVIHHGGAGTTSEALY-----------------AGVPLVVIPDGA 330 (406)
T ss_pred hhhcCEEEecCCcchHHHHHH-----------------cCCCEEEecCCc
Confidence 357899999999999999887 368999999994
No 300
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=32.88 E-value=3.1e+02 Score=24.45 Aligned_cols=68 Identities=10% Similarity=0.071 Sum_probs=36.6
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecCC---ccHHHHHHHHHHHcCCCEEEEEeCCch
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSG---PSHAIDITREAIKEGADAVIAVGGDGT 117 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~~---~~~a~~~~~~~~~~~~d~ivv~GGDGT 117 (251)
+.+.|.++++ ... ...|..+...+++.+. .++++.+..+.. ...-.+..+.+...++|.|++++.|..
T Consensus 45 ~t~~Igvv~p-~~~----~~f~~~~~~gi~~aa~~~G~~l~i~~~~~~~~~~~q~~~i~~l~~~~vdgIIl~~~~~~ 116 (343)
T PRK10936 45 KAWKLCALYP-HLK----DSYWLSVNYGMVEEAKRLGVDLKVLEAGGYYNLAKQQQQLEQCVAWGADAILLGAVTPD 116 (343)
T ss_pred CCeEEEEEec-CCC----chHHHHHHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChH
Confidence 3567777764 332 2345544443333221 235554444432 222335556667788999999887744
No 301
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=32.86 E-value=2.4e+02 Score=24.34 Aligned_cols=63 Identities=17% Similarity=0.149 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCC-hhHHhhhcCCCC
Q 025520 93 HAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGT-GSDFARTFGWRN 164 (251)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GT-gN~fa~~lg~~~ 164 (251)
+..+.+.+..+++-+++++..||-.+......|++.- ....+++-++|+=| .+..+-.+|+|.
T Consensus 68 ~i~~~i~~~~~~g~~Vv~L~sGDP~~yg~~~~l~~~l---------~~~~i~veiiPGISS~~aaaA~lg~pl 131 (257)
T PRK15473 68 QIIDLMEAGVKAGKTVVRLQTGDVSLYGSIREQGEEL---------TKRGIDFQVVPGVSSFLGAAAELGVEY 131 (257)
T ss_pred HHHHHHHHHHHCCCeEEEEeCcCchhhhhHHHHHHHH---------HHCCCCEEEeCChhHHHHHHHHcCCCc
Confidence 3334444444567789999999976665555554311 12357888899876 456666677763
No 302
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=32.70 E-value=44 Score=26.39 Aligned_cols=30 Identities=37% Similarity=0.483 Sum_probs=19.9
Q ss_pred CCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCC
Q 025520 106 ADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGT 152 (251)
Q Consensus 106 ~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GT 152 (251)
.|++|.-||=||+.|++. ...|+.++|.-.
T Consensus 73 aDlvIs~aG~~Ti~E~l~-----------------~g~P~I~ip~~~ 102 (167)
T PF04101_consen 73 ADLVISHAGAGTIAEALA-----------------LGKPAIVIPLPG 102 (167)
T ss_dssp HSEEEECS-CHHHHHHHH-----------------CT--EEEE--TT
T ss_pred cCEEEeCCCccHHHHHHH-----------------cCCCeeccCCCC
Confidence 578888899999999987 246666778776
No 303
>PRK09701 D-allose transporter subunit; Provisional
Probab=32.64 E-value=3.4e+02 Score=23.67 Aligned_cols=74 Identities=5% Similarity=0.047 Sum_probs=39.6
Q ss_pred eEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecCC---ccHHHHHHHHHHHcCCCEEEEEeCCch-HHHHH
Q 025520 48 DLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSG---PSHAIDITREAIKEGADAVIAVGGDGT-LHEVV 122 (251)
Q Consensus 48 ~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~~---~~~a~~~~~~~~~~~~d~ivv~GGDGT-l~~vl 122 (251)
.+.||+. ... ...|..+...+.+.+. .++++....+.. ..+..+..+.+...++|.||+.+.|.. ....+
T Consensus 26 ~Igvi~~-~~~----~~f~~~~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l 100 (311)
T PRK09701 26 EYAVVLK-TLS----NPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPV 100 (311)
T ss_pred eEEEEeC-CCC----CHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHH
Confidence 6777763 321 2344444433332221 235554443222 233445566777788999999998864 33555
Q ss_pred HHHH
Q 025520 123 NGFF 126 (251)
Q Consensus 123 n~l~ 126 (251)
..+.
T Consensus 101 ~~~~ 104 (311)
T PRK09701 101 ARAW 104 (311)
T ss_pred HHHH
Confidence 5554
No 304
>PRK13566 anthranilate synthase; Provisional
Probab=32.54 E-value=2.2e+02 Score=28.88 Aligned_cols=62 Identities=13% Similarity=0.171 Sum_probs=36.7
Q ss_pred CCCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHH
Q 025520 42 SSSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLH 119 (251)
Q Consensus 42 ~~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~ 119 (251)
..++.++++||-|-.+- ...+.+.|++. +.++.++......+ . +...++|.||+.||-|+..
T Consensus 522 ~~~~g~~IlvID~~dsf-------~~~l~~~Lr~~---G~~v~vv~~~~~~~---~---~~~~~~DgVVLsgGpgsp~ 583 (720)
T PRK13566 522 AVGEGKRVLLVDHEDSF-------VHTLANYFRQT---GAEVTTVRYGFAEE---M---LDRVNPDLVVLSPGPGRPS 583 (720)
T ss_pred CCCCCCEEEEEECCCch-------HHHHHHHHHHC---CCEEEEEECCCChh---H---hhhcCCCEEEECCCCCChh
Confidence 45566889888886432 22355667664 34554444433221 1 1234689999999998754
No 305
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=32.26 E-value=32 Score=26.87 Aligned_cols=48 Identities=19% Similarity=0.191 Sum_probs=29.6
Q ss_pred HHcCCCEEEEEeCCchHH------HHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhh
Q 025520 102 IKEGADAVIAVGGDGTLH------EVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFART 159 (251)
Q Consensus 102 ~~~~~d~ivv~GGDGTl~------~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~ 159 (251)
..+.||.|++.||.|... +.+..+++ .......+|+.|-.|. ..++..
T Consensus 34 ~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~---------~~~~~~k~iaaIC~g~-~~L~~~ 87 (147)
T PF01965_consen 34 DPSDYDALILPGGHGGADDLRTDSKDLLELLK---------EFYEAGKPIAAICHGP-AVLAAA 87 (147)
T ss_dssp TGGGESEEEEE-BTHHHHHHTTCHHHHHHHHH---------HHHHTT-EEEEETTCH-HHHHHT
T ss_pred ChhhCCEEEECCCCchhhhHhhHHHHHHHHHH---------HHHHcCCeEEecCCCc-chhhcc
Confidence 345699999999999433 23333332 1234578999999988 555554
No 306
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=31.89 E-value=3.2e+02 Score=25.55 Aligned_cols=73 Identities=21% Similarity=0.296 Sum_probs=47.6
Q ss_pred CCCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCc--cHHHHHHHHHH---HcCCCEEEEEeCCc
Q 025520 42 SSSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGP--SHAIDITREAI---KEGADAVIAVGGDG 116 (251)
Q Consensus 42 ~~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~--~~a~~~~~~~~---~~~~d~ivv~GGDG 116 (251)
.+.-+++|.||--|.+ ..+..+...+..... .+++.++.+.-. +-+.++++.+. ..++|+||++=|=|
T Consensus 131 lP~~p~~I~viTs~~g------Aa~~D~~~~~~~r~p-~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGG 203 (438)
T PRK00286 131 LPFFPKRIGVITSPTG------AAIRDILTVLRRRFP-LVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGG 203 (438)
T ss_pred CCCCCCEEEEEeCCcc------HHHHHHHHHHHhcCC-CCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCC
Confidence 3455899999998875 234556666666542 356666666543 34455555443 22479999999999
Q ss_pred hHHHH
Q 025520 117 TLHEV 121 (251)
Q Consensus 117 Tl~~v 121 (251)
++-+.
T Consensus 204 S~eDL 208 (438)
T PRK00286 204 SLEDL 208 (438)
T ss_pred CHHHh
Confidence 98765
No 307
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=31.69 E-value=1.4e+02 Score=23.08 Aligned_cols=72 Identities=15% Similarity=0.123 Sum_probs=40.1
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCC--ccHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSG--PSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~--~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
++++|++-+.+. ...+....+...|+..++-.+.+....... ..+...++.+..+ ..|.|+++=--|+....
T Consensus 1 ~kVfI~Ys~d~~--~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~-~ad~Vliv~S~~~~~~~ 74 (150)
T PF08357_consen 1 RKVFISYSHDSE--EHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIR-EADKVLIVCSPGYKERY 74 (150)
T ss_pred CeEEEEeCCCCH--HHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHh-cCCEEEEEeccchhHHH
Confidence 578899988653 223455667777877644333333344422 3345555555443 46766666665654433
No 308
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=31.46 E-value=1.8e+02 Score=22.51 Aligned_cols=46 Identities=26% Similarity=0.395 Sum_probs=25.1
Q ss_pred HHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCc
Q 025520 69 LLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDG 116 (251)
Q Consensus 69 i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDG 116 (251)
+...|++. +.......+..+++....+..++... +.|+||+.||=|
T Consensus 22 l~~~l~~~-G~~v~~~~~v~Dd~~~i~~~l~~~~~-~~D~VittGG~g 67 (144)
T PF00994_consen 22 LAALLEEL-GIEVIRYGIVPDDPDAIKEALRRALD-RADLVITTGGTG 67 (144)
T ss_dssp HHHHHHHT-TEEEEEEEEEESSHHHHHHHHHHHHH-TTSEEEEESSSS
T ss_pred HHHHHHHc-CCeeeEEEEECCCHHHHHHHHHhhhc-cCCEEEEcCCcC
Confidence 44556653 21222222444555555555544443 569999999866
No 309
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=31.41 E-value=3.4e+02 Score=25.57 Aligned_cols=75 Identities=17% Similarity=0.224 Sum_probs=47.3
Q ss_pred CCCCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecC--CccHHHHHHHHHH---H-cCCCEEEEEeC
Q 025520 41 ASSSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTS--GPSHAIDITREAI---K-EGADAVIAVGG 114 (251)
Q Consensus 41 ~~~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~--~~~~a~~~~~~~~---~-~~~d~ivv~GG 114 (251)
+.+.-+++|.||-.|.+. .+..+...+..... .+++.++.+. ..+-+.++++.+. . .++|+||++=|
T Consensus 124 ~lP~~p~~i~vits~~~a------a~~D~~~~~~~r~p-~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RG 196 (432)
T TIGR00237 124 PLPHFPKRVGVITSQTGA------ALADILHILKRRDP-SLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRG 196 (432)
T ss_pred CCCCCCCEEEEEeCCccH------HHHHHHHHHHhhCC-CceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecC
Confidence 345567899999988752 34556666666542 2455555444 3334455555443 2 24799999999
Q ss_pred CchHHHHH
Q 025520 115 DGTLHEVV 122 (251)
Q Consensus 115 DGTl~~vl 122 (251)
=|++-+..
T Consensus 197 GGs~eDL~ 204 (432)
T TIGR00237 197 GGSLEDLW 204 (432)
T ss_pred CCCHHHhh
Confidence 99997654
No 310
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=30.94 E-value=3.6e+02 Score=23.49 Aligned_cols=77 Identities=12% Similarity=0.082 Sum_probs=44.3
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEE-ecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICES-LTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~-~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
-+.+++.+|+.-.. ....+...++........+... ..... +...+++++...+.|+|++.+-......++
T Consensus 127 ~~w~~vavl~~~~~-------~~~~l~~~~~~~~~~g~~v~~~~~~~~~-d~~~~l~~i~~~~~d~vv~~~~~~~~~~~~ 198 (327)
T cd06382 127 FNWKSFTIIYESAE-------GLLRLQELLQAFGISGITITVRQLDDDL-DYRPLLKEIKNSGDNRIIIDCSADILIELL 198 (327)
T ss_pred cCCcEEEEEecChH-------HHHHHHHHHHhhccCCCeEEEEEccCCc-cHHHHHHHHHhcCceEEEEECCHHHHHHHH
Confidence 36688888886432 1122334444432111122221 12222 777888888888889988887767777777
Q ss_pred HHHHhC
Q 025520 123 NGFFSA 128 (251)
Q Consensus 123 n~l~~~ 128 (251)
..+.+.
T Consensus 199 ~qa~~~ 204 (327)
T cd06382 199 KQAQQV 204 (327)
T ss_pred HHHHHh
Confidence 776543
No 311
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=30.88 E-value=3.5e+02 Score=23.37 Aligned_cols=78 Identities=12% Similarity=0.073 Sum_probs=47.2
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEE--ecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICES--LTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~--~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
+.+++.+|..... - .....+.+...++.. +.++... ......+...+++++...+.|.|+..|.+.....++
T Consensus 134 ~~~~v~~v~~~~~-~--g~~~~~~~~~~~~~~---g~~v~~~~~~~~~~~d~~~~l~~i~~~~~~~vi~~~~~~~~~~~~ 207 (334)
T cd06342 134 KAKKVAIIDDKTA-Y--GQGLADEFKKALKAA---GGKVVAREGTTDGATDFSAILTKIKAANPDAVFFGGYYPEAGPLV 207 (334)
T ss_pred CCCEEEEEeCCcc-h--hhHHHHHHHHHHHHc---CCEEEEEecCCCCCccHHHHHHHHHhcCCCEEEEcCcchhHHHHH
Confidence 4678888875542 2 233444455555543 2333322 222345677778888888899998877666666777
Q ss_pred HHHHhC
Q 025520 123 NGFFSA 128 (251)
Q Consensus 123 n~l~~~ 128 (251)
..+...
T Consensus 208 ~~~~~~ 213 (334)
T cd06342 208 RQMRQL 213 (334)
T ss_pred HHHHHc
Confidence 777643
No 312
>PRK00170 azoreductase; Reviewed
Probab=30.68 E-value=2.9e+02 Score=22.35 Aligned_cols=31 Identities=3% Similarity=0.038 Sum_probs=19.2
Q ss_pred CCeEEEEE-cCCCCCCChhhHHHHHHHHHHhh
Q 025520 46 RRDLVFVV-NPRGASGRTGKEWKKLLPYLRSR 76 (251)
Q Consensus 46 ~~~i~viv-NP~sg~g~~~~~~~~i~~~L~~~ 76 (251)
|+++++|. +|+...+.+.+..+.++..|++.
T Consensus 1 Mmkil~i~gSpr~~~s~s~~l~~~~~~~l~~~ 32 (201)
T PRK00170 1 MSKVLVIKSSILGDYSQSMQLGDAFIEAYKEA 32 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHHHh
Confidence 35555555 67654366667777777777664
No 313
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=30.51 E-value=3.7e+02 Score=23.51 Aligned_cols=77 Identities=14% Similarity=0.114 Sum_probs=39.2
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEE-Ee-cCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICE-SL-TSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~-~~-t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
+.+++.+|++.... -+....+.+...+++.. ..++.. +. .....+....+.++...+.|.|++.+.-+.+..++
T Consensus 133 ~~~~v~~i~~~~~~--~g~~~~~~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~~v~~i~~~~~d~v~~~~~~~~~~~~~ 208 (332)
T cd06344 133 KIKKVAIFYNSTSP--YSQSLKQEFTSALLERG--GGIVVTPCDLSSPDFNANTAVSQAINNGATVLVLFPDTDTLDKAL 208 (332)
T ss_pred CCCeEEEEeCCCch--HhHHHHHHHHHHHHHhc--CCeeeeeccCCCCCCCHHHHHHHHHhcCCCEEEEeCChhHHHHHH
Confidence 36899988875431 12233334445555421 122211 11 11223455567777777888777655433555555
Q ss_pred HHH
Q 025520 123 NGF 125 (251)
Q Consensus 123 n~l 125 (251)
..+
T Consensus 209 ~~~ 211 (332)
T cd06344 209 EVA 211 (332)
T ss_pred HHH
Confidence 554
No 314
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=30.49 E-value=3.3e+02 Score=22.95 Aligned_cols=80 Identities=11% Similarity=0.014 Sum_probs=44.5
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccE-EEEec----CCccHHHHHHHHHHHcCC--CE-EEEEeCCchH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNI-CESLT----SGPSHAIDITREAIKEGA--DA-VIAVGGDGTL 118 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~-~~~~t----~~~~~a~~~~~~~~~~~~--d~-ivv~GGDGTl 118 (251)
+++.+|..+.........+++-+...|+... +.. .++.+ .+.+.+.+.++++..... +. .|++.+|...
T Consensus 130 ~~i~~i~~~~~~~~~~~~R~~G~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~d~~a 206 (289)
T cd01540 130 KEVGALRITYDELDTAKPRTDGALEALKAPG---FPEANIFQAPQKTTDTEGAFDAAASTLTKNPNVKNWIIYGLNDETV 206 (289)
T ss_pred cceEEEEecCCCCcchhhHHHHHHHHHhcCC---CCcceEecccccCcchhhHHHHHHHHHHhCCCcCeeEEEeCCcHHH
Confidence 5777775332212233445555666666431 211 11221 124455566677665433 42 6888999999
Q ss_pred HHHHHHHHhCC
Q 025520 119 HEVVNGFFSAG 129 (251)
Q Consensus 119 ~~vln~l~~~~ 129 (251)
..+++.+.+.+
T Consensus 207 ~g~~~al~~~g 217 (289)
T cd01540 207 LGAVRATEQSG 217 (289)
T ss_pred HHHHHHHHHcC
Confidence 99999997644
No 315
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=30.20 E-value=3e+02 Score=22.35 Aligned_cols=81 Identities=10% Similarity=0.165 Sum_probs=42.0
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcC--CCEEEEEeCCchHHHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEG--ADAVIAVGGDGTLHEVVN 123 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~--~d~ivv~GGDGTl~~vln 123 (251)
.+++.+|.++... .......+.+...++...............+..+..+.++++...+ .|.|+ +.+|.+...++.
T Consensus 118 ~~~i~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~-~~~~~~a~~~~~ 195 (264)
T cd01537 118 HRRIALLAGPLGS-STARERVAGFKDALKEAGPIEIVLVQEGDWDAEKGYQAAEELLTAHPDPTAIF-AANDDMALGALR 195 (264)
T ss_pred CCcEEEEECCCCC-CcHHHHHHHHHHHHHHcCCcChhhhccCCCCHHHHHHHHHHHHhcCCCCCEEE-EcCcHHHHHHHH
Confidence 6789998876542 2223333445555554320111111111223345556666766655 44444 556677777888
Q ss_pred HHHhC
Q 025520 124 GFFSA 128 (251)
Q Consensus 124 ~l~~~ 128 (251)
.+.+.
T Consensus 196 ~~~~~ 200 (264)
T cd01537 196 ALREA 200 (264)
T ss_pred HHHHh
Confidence 87643
No 316
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Probab=30.01 E-value=3.9e+02 Score=23.62 Aligned_cols=65 Identities=23% Similarity=0.215 Sum_probs=34.6
Q ss_pred EEEEEcCCCCCCC--hhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCc
Q 025520 49 LVFVVNPRGASGR--TGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDG 116 (251)
Q Consensus 49 i~vivNP~sg~g~--~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDG 116 (251)
|.+++ |.+|... +....+-++-.++...+..+++.+..+..+..+...++++..++.+ +++|.-.
T Consensus 2 IG~l~-plsG~~a~~g~~~~~g~~lA~~~inG~~i~l~~~D~~~~~~a~~~~~~li~~~V~--~iiG~~~ 68 (336)
T cd06339 2 IALLL-PLSGPLASVGQAIRNGFLAALYDLNGASIELRVYDTAGAAGAAAAARQAVAEGAD--IIVGPLL 68 (336)
T ss_pred eEEEE-cCCCcchHHHHHHHHHHHHHHHhccCCCceEEEEeCCCcccHHHHHHHHHHcCCC--EEEccCC
Confidence 34444 7776531 1122233333444422334666666665567788888888766555 4556543
No 317
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=29.87 E-value=3.3e+02 Score=22.70 Aligned_cols=48 Identities=13% Similarity=0.114 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHhhcCCCccEEEEecC-CccHHHHHHHHHHHcCCCEEEEEeC
Q 025520 64 KEWKKLLPYLRSRLSVDCNICESLTS-GPSHAIDITREAIKEGADAVIAVGG 114 (251)
Q Consensus 64 ~~~~~i~~~L~~~~~~~~~~~~~~t~-~~~~a~~~~~~~~~~~~d~ivv~GG 114 (251)
..++.++..+++. ++++.+..+. +++...+..+.+...+.|.|++.+.
T Consensus 16 ~~~~gi~~~~~~~---g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 64 (273)
T cd06292 16 AFAEAIEAALAQY---GYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISS 64 (273)
T ss_pred HHHHHHHHHHHHC---CCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3334455555542 3555444443 2344456677788889999999874
No 318
>PRK01215 competence damage-inducible protein A; Provisional
Probab=29.20 E-value=2.9e+02 Score=24.19 Aligned_cols=46 Identities=24% Similarity=0.277 Sum_probs=25.3
Q ss_pred HHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCc
Q 025520 69 LLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDG 116 (251)
Q Consensus 69 i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDG 116 (251)
+...|... +..........++.++..+..+++.. .+|+|++.||=|
T Consensus 28 l~~~L~~~-G~~v~~~~~v~Dd~~~I~~~l~~a~~-~~DlVIttGG~g 73 (264)
T PRK01215 28 IARRLTYL-GYTVRRITVVMDDIEEIVSAFREAID-RADVVVSTGGLG 73 (264)
T ss_pred HHHHHHHC-CCeEEEEEEeCCCHHHHHHHHHHHhc-CCCEEEEeCCCc
Confidence 44456553 22222222344455555555555544 579999999955
No 319
>PF11711 Tim54: Inner membrane protein import complex subunit Tim54; InterPro: IPR021056 Mitochondrial function depends on the import of hundreds of different proteins synthesised in the cytosol. Protein import is a multi-step pathway which includes the binding of precursor proteins to surface receptors, translocation of the precursor across one or both mitochondrial membranes, and folding and assembly of the imported protein inside the mitochondrion. Most precursor proteins carry amino-terminal targeting signals, called pre-sequences, and are imported into mitochondria via import complexes located in both the outer and the inner membrane (IM). The IM complex, TIM, is made up of at least two proteins which mediate translocation of proteins into the matrix by removing their signal peptide and another pair of proteins, Tim54 and Tim22, that insert the polytopic proteins, that carry internal targeting information, into the inner membrane [].
Probab=29.16 E-value=2.3e+02 Score=26.46 Aligned_cols=53 Identities=13% Similarity=0.144 Sum_probs=38.7
Q ss_pred CCCCCCeEEEEEcCCCCCC--ChhhHHHHHH-HHHHhhcCCCccEEEEecCCccHHHHH
Q 025520 42 SSSRRRDLVFVVNPRGASG--RTGKEWKKLL-PYLRSRLSVDCNICESLTSGPSHAIDI 97 (251)
Q Consensus 42 ~~~~~~~i~vivNP~sg~g--~~~~~~~~i~-~~L~~~~~~~~~~~~~~t~~~~~a~~~ 97 (251)
....++++.|++.|--|.+ .+.+.|++++ ++|.+. +++++++..+..++....
T Consensus 63 ~~~~PRKlTVy~a~pPgD~l~~a~~~Fr~YVKPIL~Aa---glDyevv~g~rqGdIr~~ 118 (382)
T PF11711_consen 63 PDELPRKLTVYIAPPPGDGLDVARKYFREYVKPILVAA---GLDYEVVEGRRQGDIRAK 118 (382)
T ss_pred CCCCCceEEEEeeCCCCccHHHHHHHHHHHHHHHHHhh---ccceEEeccccccHHHHH
Confidence 3558899999999887665 4566787754 567653 578888888888876643
No 320
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=28.60 E-value=1.9e+02 Score=25.79 Aligned_cols=68 Identities=15% Similarity=0.173 Sum_probs=35.0
Q ss_pred EEEEcCCCCCCC-hhhHHHHHHHHHHhhcCCCccEEEEecCC------ccHHHHHHHH----HHHcCCCEE-EEEeCCch
Q 025520 50 VFVVNPRGASGR-TGKEWKKLLPYLRSRLSVDCNICESLTSG------PSHAIDITRE----AIKEGADAV-IAVGGDGT 117 (251)
Q Consensus 50 ~vivNP~sg~g~-~~~~~~~i~~~L~~~~~~~~~~~~~~t~~------~~~a~~~~~~----~~~~~~d~i-vv~GGDGT 117 (251)
.-|+.|.++-.. ....++..++.|+.. ++++.+-.+-. .+..++-+++ +...+.|.| -+.||+|+
T Consensus 3 I~ivAPS~~~~~~~~~~~~~~~~~L~~~---G~~v~~~~~~~~~~~~~ag~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~ 79 (308)
T cd07062 3 IAVVSPSSGIPGELPHRLERAKKRLENL---GFEVVEGPNALKGDKYLSASPEERAEELMAAFADPSIKAIIPTIGGDDS 79 (308)
T ss_pred EEEEeCCCCCcccCHHHHHHHHHHHHhC---CCEEEEecccccccccccCCHHHHHHHHHHHhcCCCCCEEEECCcccCH
Confidence 346778876321 135556666777764 34444322211 2233333333 333456655 45699998
Q ss_pred HHH
Q 025520 118 LHE 120 (251)
Q Consensus 118 l~~ 120 (251)
..-
T Consensus 80 ~rl 82 (308)
T cd07062 80 NEL 82 (308)
T ss_pred hhh
Confidence 653
No 321
>COG3395 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.41 E-value=60 Score=30.55 Aligned_cols=29 Identities=28% Similarity=0.557 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCEEEEEeCCchHHHHHHHH
Q 025520 96 DITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (251)
Q Consensus 96 ~~~~~~~~~~~d~ivv~GGDGTl~~vln~l 125 (251)
++++++..++.+.+++.||| |-+.|+..|
T Consensus 337 ~la~~l~~~~v~~livaGGe-TS~~Vl~~L 365 (413)
T COG3395 337 DLARRLVARGVRRLIVAGGE-TSGAVLGQL 365 (413)
T ss_pred HHHHHHHHhhhceEEecCCc-chHHHHHhh
No 322
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=28.41 E-value=4.2e+02 Score=23.48 Aligned_cols=78 Identities=15% Similarity=0.075 Sum_probs=45.4
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEE--EEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNIC--ESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~--~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
..|++.+|..-.+ -+...++.+...+++. +.++. ........+...++.++...++|.|++.+.-.-...++
T Consensus 132 g~k~vaii~~d~~---~g~~~~~~~~~~~~~~---G~~vv~~~~~~~~~~D~~~~v~~l~~~~pd~v~~~~~~~~~~~~~ 205 (348)
T cd06355 132 GGKRFYLVGSDYV---YPRTANKILKAQLESL---GGEVVGEEYLPLGHTDFQSIINKIKAAKPDVVVSTVNGDSNVAFF 205 (348)
T ss_pred CCCeEEEECCcch---HHHHHHHHHHHHHHHc---CCeEEeeEEecCChhhHHHHHHHHHHhCCCEEEEeccCCchHHHH
Confidence 4788888764332 1234455566667664 23332 22333445677778888888999888754433345566
Q ss_pred HHHHhC
Q 025520 123 NGFFSA 128 (251)
Q Consensus 123 n~l~~~ 128 (251)
..+...
T Consensus 206 ~~~~~~ 211 (348)
T cd06355 206 KQLKAA 211 (348)
T ss_pred HHHHHc
Confidence 666543
No 323
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=28.26 E-value=3.7e+02 Score=22.76 Aligned_cols=54 Identities=13% Similarity=0.046 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHH
Q 025520 66 WKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFF 126 (251)
Q Consensus 66 ~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~ 126 (251)
.+.+...+++. ++++.+..+.. ..+..+.+...+.|.|++.+-|.+- ..++.+.
T Consensus 23 ~~gi~~~a~~~---g~~~~~~~~~~---~~~~~~~~~~~~~dgiii~~~~~~~-~~~~~~~ 76 (283)
T cd06279 23 LAGVAEVLDAA---GVNLLLLPASS---EDSDSALVVSALVDGFIVYGVPRDD-PLVAALL 76 (283)
T ss_pred HHHHHHHHHHC---CCEEEEecCcc---HHHHHHHHHhcCCCEEEEeCCCCCh-HHHHHHH
Confidence 33444444442 45655544433 2345556667889999999877653 4566554
No 324
>PRK11175 universal stress protein UspE; Provisional
Probab=28.25 E-value=3.9e+02 Score=23.06 Aligned_cols=46 Identities=17% Similarity=0.219 Sum_probs=27.3
Q ss_pred HHHHHHHHHcCCCEEEEEe-CCchHHHHH-----HHHHhCCcccccccccccCCceEEEecCCC
Q 025520 95 IDITREAIKEGADAVIAVG-GDGTLHEVV-----NGFFSAGKLVTNHNRESAHSTALGLIPLGT 152 (251)
Q Consensus 95 ~~~~~~~~~~~~d~ivv~G-GDGTl~~vl-----n~l~~~~~~~~~~~~~~~~~~~lgilP~GT 152 (251)
..+.+.+...++|.||+.. |.+.+...+ ..|++ ..++|+-++|-+.
T Consensus 97 ~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~gs~~~~l~~------------~~~~pvlvv~~~~ 148 (305)
T PRK11175 97 EAIIQEVIAGGHDLVVKMTHQHDKLESVIFTPTDWHLLR------------KCPCPVLMVKDQD 148 (305)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcHHHhhccChhHHHHHh------------cCCCCEEEecccc
Confidence 3445555566788766542 334455543 44543 4579999999764
No 325
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=28.24 E-value=4.1e+02 Score=23.32 Aligned_cols=68 Identities=10% Similarity=-0.015 Sum_probs=35.7
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecC-CccHHHHHHHHHHHcCCCEEEEEeCC
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTS-GPSHAIDITREAIKEGADAVIAVGGD 115 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~-~~~~a~~~~~~~~~~~~d~ivv~GGD 115 (251)
.+.+.+.+++.-.+ +.-....++.+...++.. ++++.+..+. +++...+..+.+...+.|.|++.+.+
T Consensus 57 ~~~~~Igvi~~~~~-~~f~~~l~~gi~~~~~~~---gy~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~ 125 (346)
T PRK10401 57 QVSDTIGVVVMDVS-DAFFGALVKAVDLVAQQH---QKYVLIGNSYHEAEKERHAIEVLIRQRCNALIVHSKA 125 (346)
T ss_pred CCCCEEEEEeCCCC-CccHHHHHHHHHHHHHHC---CCEEEEEcCCCChHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 45567888875332 222223333444444442 3454433332 23333445666667789999998754
No 326
>PLN00180 NDF6 (NDH-dependent flow 6); Provisional
Probab=28.15 E-value=13 Score=30.06 Aligned_cols=16 Identities=44% Similarity=0.451 Sum_probs=11.5
Q ss_pred EEEEEeCCchHHHHHH
Q 025520 108 AVIAVGGDGTLHEVVN 123 (251)
Q Consensus 108 ~ivv~GGDGTl~~vln 123 (251)
.-=--|||||.|.+-.
T Consensus 127 ~YRgdGGDGT~hW~Yd 142 (180)
T PLN00180 127 EYRGDGGDGTGHWVYE 142 (180)
T ss_pred HhcccCCCCceeeEee
Confidence 3345699999987644
No 327
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=28.14 E-value=3.5e+02 Score=23.63 Aligned_cols=77 Identities=10% Similarity=0.039 Sum_probs=46.2
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEE--EEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNIC--ESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVN 123 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~--~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln 123 (251)
.+++.++. +...- +...++.+...+++.. .++. ........+...+++++...++|.|++++..+-...++.
T Consensus 135 ~~~v~~i~-~~~~~--g~~~~~~~~~~~~~~G---~~vv~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~~~~~~~~~~~~ 208 (334)
T cd06327 135 GKKWFFLT-ADYAF--GHSLERDARKVVKANG---GKVVGSVRHPLGTSDFSSYLLQAQASGADVLVLANAGADTVNAIK 208 (334)
T ss_pred CCeEEEEe-cchHH--hHHHHHHHHHHHHhcC---CEEcCcccCCCCCccHHHHHHHHHhCCCCEEEEeccchhHHHHHH
Confidence 67777666 33222 2344455555665532 2321 122233457777888888889999988887666666777
Q ss_pred HHHhC
Q 025520 124 GFFSA 128 (251)
Q Consensus 124 ~l~~~ 128 (251)
.+.+.
T Consensus 209 ~~~~~ 213 (334)
T cd06327 209 QAAEF 213 (334)
T ss_pred HHHHh
Confidence 77543
No 328
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=28.02 E-value=4.2e+02 Score=23.39 Aligned_cols=79 Identities=13% Similarity=0.008 Sum_probs=49.3
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEE--EEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNIC--ESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~--~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
..+++.+|....+ -+....+.+...+++.. .++. ........+...++.++...+.|.|++.+..+....++
T Consensus 143 g~~~v~ii~~~~~---~g~~~~~~~~~~~~~~G---~~vv~~~~~~~~~~d~~~~v~~i~~~~~d~v~~~~~~~~~~~~~ 216 (362)
T cd06343 143 PNAKIAVLYQNDD---FGKDYLKGLKDGLGDAG---LEIVAETSYEVTEPDFDSQVAKLKAAGADVVVLATTPKFAAQAI 216 (362)
T ss_pred CCceEEEEEeccH---HHHHHHHHHHHHHHHcC---CeEEEEeeecCCCccHHHHHHHHHhcCCCEEEEEcCcHHHHHHH
Confidence 4678888874322 22344455566666542 3322 12222344666777888888999999988877888888
Q ss_pred HHHHhCC
Q 025520 123 NGFFSAG 129 (251)
Q Consensus 123 n~l~~~~ 129 (251)
..+...+
T Consensus 217 ~~~~~~g 223 (362)
T cd06343 217 RKAAELG 223 (362)
T ss_pred HHHHHcC
Confidence 8886543
No 329
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=27.96 E-value=4.2e+02 Score=23.37 Aligned_cols=78 Identities=9% Similarity=0.046 Sum_probs=46.3
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEE--EEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNIC--ESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~--~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
..+++.++....+ -....++.+...+++. +.++. ........+...+++++...+.|.|++.+--.-...++
T Consensus 143 ~~~~v~~l~~~~~---~g~~~~~~~~~~~~~~---G~~vv~~~~~~~~~~d~~~~i~~l~~~~~d~v~~~~~~~~~~~~~ 216 (347)
T cd06340 143 PLKTVALVHEDTE---FGTSVAEAIKKFAKER---GFEIVEDISYPANARDLTSEVLKLKAANPDAILPASYTNDAILLV 216 (347)
T ss_pred CCceEEEEecCch---HhHHHHHHHHHHHHHc---CCEEEEeeccCCCCcchHHHHHHHHhcCCCEEEEcccchhHHHHH
Confidence 4578887765332 2234455555566653 23332 12222345777788888888899888776655666677
Q ss_pred HHHHhC
Q 025520 123 NGFFSA 128 (251)
Q Consensus 123 n~l~~~ 128 (251)
..+...
T Consensus 217 ~~~~~~ 222 (347)
T cd06340 217 RTMKEQ 222 (347)
T ss_pred HHHHHc
Confidence 776543
No 330
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=27.96 E-value=1.1e+02 Score=25.64 Aligned_cols=22 Identities=27% Similarity=0.647 Sum_probs=20.0
Q ss_pred CCCEEEEEeCCchHHHHHHHHHh
Q 025520 105 GADAVIAVGGDGTLHEVVNGFFS 127 (251)
Q Consensus 105 ~~d~ivv~GGDGTl~~vln~l~~ 127 (251)
.+|++++.|| |++.++++.+..
T Consensus 102 ~~daiFIGGg-~~i~~ile~~~~ 123 (187)
T COG2242 102 SPDAIFIGGG-GNIEEILEAAWE 123 (187)
T ss_pred CCCEEEECCC-CCHHHHHHHHHH
Confidence 6899999999 999999999975
No 331
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=27.80 E-value=45 Score=25.86 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=22.8
Q ss_pred CC-EEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecC
Q 025520 106 AD-AVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPL 150 (251)
Q Consensus 106 ~d-~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~ 150 (251)
.| .|+.-||=||+.|+...+.... -....+.|+.++-.
T Consensus 54 sda~I~lPGG~GTl~El~~~~~~~~-------l~~~~~~Piil~~~ 92 (133)
T PF03641_consen 54 SDAFIALPGGIGTLDELFEALTLMQ-------LGRHNKVPIILLNI 92 (133)
T ss_dssp ESEEEEES-SHHHHHHHHHHHHHHH-------TTSSTS-EEEEEEC
T ss_pred CCEEEEEecCCchHHHHHHHHHHHh-------hccccCCCEEEeCC
Confidence 44 5666688999999998875321 01123448877753
No 332
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=27.63 E-value=4.2e+02 Score=23.15 Aligned_cols=78 Identities=14% Similarity=0.109 Sum_probs=46.2
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEE--EEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNIC--ESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVN 123 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~--~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln 123 (251)
.+++.+|..... -+....+.+...+++. +.++. ........+...+++++...++|.|++.|--.....+++
T Consensus 132 ~~~v~il~~d~~---~g~~~~~~~~~~~~~~---G~~vv~~~~~~~~~~d~~~~v~~~~~~~~d~v~~~~~~~~~~~~~~ 205 (333)
T cd06331 132 GKRFYLIGSDYV---WPRESNRIARALLEEL---GGEVVGEEYLPLGTSDFGSVIEKIKAAGPDVVLSTLVGDSNVAFYR 205 (333)
T ss_pred CCeEEEECCCch---hHHHHHHHHHHHHHHc---CCEEEEEEEecCCcccHHHHHHHHHHcCCCEEEEecCCCChHHHHH
Confidence 688888864332 2223344455556553 23332 122223456777888888889998887655445567888
Q ss_pred HHHhCC
Q 025520 124 GFFSAG 129 (251)
Q Consensus 124 ~l~~~~ 129 (251)
.+...+
T Consensus 206 ~~~~~g 211 (333)
T cd06331 206 QFAAAG 211 (333)
T ss_pred HHHHcC
Confidence 886544
No 333
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=27.38 E-value=3.6e+02 Score=22.35 Aligned_cols=56 Identities=18% Similarity=0.149 Sum_probs=30.9
Q ss_pred HHHHHHHHhhcCCCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHH
Q 025520 67 KKLLPYLRSRLSVDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFF 126 (251)
Q Consensus 67 ~~i~~~L~~~~~~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~ 126 (251)
+.+.+.++.. ++++.+..+.. +....++.+.+...+.|.|++.+.|-+-. .+..+.
T Consensus 19 ~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~-~~~~~~ 75 (264)
T cd06274 19 KRLEALARER---GYQLLIACSDDDPETERETVETLIARQVDALIVAGSLPPDD-PYYLCQ 75 (264)
T ss_pred HHHHHHHHHC---CCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCchH-HHHHHH
Confidence 3344444442 35554444432 33334566677778999999998864322 244443
No 334
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.25 E-value=3.7e+02 Score=22.39 Aligned_cols=63 Identities=17% Similarity=0.097 Sum_probs=33.6
Q ss_pred EEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecC-CccHHHHHHHHHHHcCCCEEEEEeCC
Q 025520 49 LVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTS-GPSHAIDITREAIKEGADAVIAVGGD 115 (251)
Q Consensus 49 i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~-~~~~a~~~~~~~~~~~~d~ivv~GGD 115 (251)
+.||+ |...+.-....++.+...+++. ++++.+..+. ......+..+.+...++|.|++.+-+
T Consensus 2 Ig~i~-~~~~~~~~~~~~~gi~~~~~~~---gy~v~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~ 65 (269)
T cd06293 2 IGLVV-PDIANPFFAELADAVEEEADAR---GLSLVLCATRNRPERELTYLRWLDTNHVDGLIFVTNR 65 (269)
T ss_pred EEEEe-CCCCCCcHHHHHHHHHHHHHHC---CCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 45555 4332222233334444455442 3555544443 23344566677777889999998744
No 335
>PF12138 Spherulin4: Spherulation-specific family 4; InterPro: IPR021986 This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein.
Probab=27.21 E-value=2.9e+02 Score=24.06 Aligned_cols=33 Identities=15% Similarity=0.426 Sum_probs=23.2
Q ss_pred CCCCCCeEEEEEcCCCCCCCh-----hhHHHHHHHHHH
Q 025520 42 SSSRRRDLVFVVNPRGASGRT-----GKEWKKLLPYLR 74 (251)
Q Consensus 42 ~~~~~~~i~vivNP~sg~g~~-----~~~~~~i~~~L~ 74 (251)
.......+.+|+||.+|-|.. +..+...+..|.
T Consensus 26 ~~~p~~~f~vIiNP~sGPG~~~~~~pd~~Y~~~i~~L~ 63 (253)
T PF12138_consen 26 AAHPSVPFTVIINPNSGPGSAPDPWPDANYAAAIPRLN 63 (253)
T ss_pred hcCCCCcEEEEEcCCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 355667899999999998854 344555555664
No 336
>PRK06490 glutamine amidotransferase; Provisional
Probab=27.16 E-value=1.3e+02 Score=25.86 Aligned_cols=64 Identities=11% Similarity=0.143 Sum_probs=36.1
Q ss_pred CCCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHH
Q 025520 42 SSSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLH 119 (251)
Q Consensus 42 ~~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~ 119 (251)
+...+++++||.|-.+..-. .+...|+.. +.++.++.....+.. -.+ .+++|.+|+.||-+++.
T Consensus 3 ~~~~~~~vlvi~h~~~~~~g------~l~~~l~~~---g~~~~v~~~~~~~~~---p~~--l~~~dgvii~Ggp~~~~ 66 (239)
T PRK06490 3 QARDKRPVLIVLHQERSTPG------RVGQLLQER---GYPLDIRRPRLGDPL---PDT--LEDHAGAVIFGGPMSAN 66 (239)
T ss_pred ccCCCceEEEEecCCCCCCh------HHHHHHHHC---CCceEEEeccCCCCC---CCc--ccccCEEEEECCCCCCC
Confidence 45677899999998764321 134555553 234444433211111 011 23589999999988753
No 337
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=26.96 E-value=2.8e+02 Score=22.92 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=25.1
Q ss_pred CCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhh
Q 025520 105 GADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFAR 158 (251)
Q Consensus 105 ~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~ 158 (251)
..|.|++.|||=. ..++.+.... ..+..........+++-..+|+....-.
T Consensus 80 ~ad~I~~~GG~~~--~~~~~l~~t~-~~~~i~~~~~~G~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 80 EADGIFVGGGNQL--RLLSVLRETP-LLDAILKRVARGVVIGGTSAGAAVMGET 130 (210)
T ss_pred hCCEEEEcCCcHH--HHHHHHHhCC-hHHHHHHHHHcCCeEEEcCHHHHHhhhc
Confidence 5899999998843 2233322110 0000000112356777777777554443
No 338
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=26.75 E-value=1.1e+02 Score=23.87 Aligned_cols=30 Identities=23% Similarity=0.246 Sum_probs=19.6
Q ss_pred EecCCccHHHHHHHHHHHcCC-CEEEEEeCC
Q 025520 86 SLTSGPSHAIDITREAIKEGA-DAVIAVGGD 115 (251)
Q Consensus 86 ~~t~~~~~a~~~~~~~~~~~~-d~ivv~GGD 115 (251)
..+++.....++++++.+.+. +..+++||-
T Consensus 62 l~~~~~~~~~~~~~~L~~~g~~~i~vivGG~ 92 (132)
T TIGR00640 62 LAGGHLTLVPALRKELDKLGRPDILVVVGGV 92 (132)
T ss_pred chhhhHHHHHHHHHHHHhcCCCCCEEEEeCC
Confidence 445566667777777766555 566777763
No 339
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=26.71 E-value=4.3e+02 Score=23.00 Aligned_cols=77 Identities=9% Similarity=0.030 Sum_probs=39.4
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
++.+.+.+++...+ ...|.++..-+...+. .++++.+..+.. ++...+..+.+...+.|.|++.+-+.+ .+.
T Consensus 61 ~~~~~Igvi~~~~~-----~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiI~~~~~~~-~~~ 134 (331)
T PRK14987 61 ATSRAIGVLLPSLT-----NQVFAEVLRGIESVTDAHGYQTMLAHYGYKPEMEQERLESMLSWNIDGLILTERTHT-PRT 134 (331)
T ss_pred CCCCEEEEEeCCCc-----chhHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCC-HHH
Confidence 35567888874322 2344444433333221 235554433332 223334555666778999999875533 345
Q ss_pred HHHHH
Q 025520 122 VNGFF 126 (251)
Q Consensus 122 ln~l~ 126 (251)
+..+.
T Consensus 135 ~~~l~ 139 (331)
T PRK14987 135 LKMIE 139 (331)
T ss_pred HHHHH
Confidence 55553
No 340
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=26.71 E-value=4.2e+02 Score=22.93 Aligned_cols=83 Identities=14% Similarity=0.053 Sum_probs=46.2
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCcc-EEEEecC-CccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCN-ICESLTS-GPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~-~~~~~t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
..+++.+|..+.........+.+-+...|+++.- ... ..+.... +...+.+.++++...+++. |++.+|..-..++
T Consensus 175 G~~~I~~i~g~~~~~~~~~~R~~Gf~~~l~~~g~-~~~~~~~~~~~~~~~~~~~~~~~ll~~~p~a-i~~~~d~~A~g~~ 252 (329)
T TIGR01481 175 GHKSIAFVGGPLSDSINGEDRLEGYKEALNKAGI-QFGEDLVCEGKYSYDAGYKAFAELKGSLPTA-VFVASDEMAAGIL 252 (329)
T ss_pred CCCeEEEEecCcccccchHHHHHHHHHHHHHcCC-CCCcceEEecCCChHHHHHHHHHHhCCCCCE-EEEcCcHHHHHHH
Confidence 5678888876543221223444555566665421 111 1112222 2345566677766555665 5568898888999
Q ss_pred HHHHhCC
Q 025520 123 NGFFSAG 129 (251)
Q Consensus 123 n~l~~~~ 129 (251)
..|...+
T Consensus 253 ~al~~~g 259 (329)
T TIGR01481 253 NAAMDAG 259 (329)
T ss_pred HHHHHcC
Confidence 9987644
No 341
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=26.58 E-value=4.1e+02 Score=22.70 Aligned_cols=68 Identities=7% Similarity=0.040 Sum_probs=35.5
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCc-cHHHHHHHHHHHcCCCEEEEEeCC
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGP-SHAIDITREAIKEGADAVIAVGGD 115 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~-~~a~~~~~~~~~~~~d~ivv~GGD 115 (251)
++.+.+.+++. .....--...++.+...+++. ++++.+..+... ....+..+.+...++|.|++.+-+
T Consensus 33 ~~~~~ig~v~~-~~~~~~~~~~~~gi~~~~~~~---g~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~ 101 (309)
T PRK11041 33 NESRTILVIVP-DICDPFFSEIIRGIEVTAAEH---GYLVLIGDCAHQNQQEKTFVNLIITKQIDGMLLLGSR 101 (309)
T ss_pred CCCcEEEEEeC-CCcCccHHHHHHHHHHHHHHC---CCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCC
Confidence 34467777764 221111222333344444442 355544444332 223355666777889999998764
No 342
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=26.35 E-value=1e+02 Score=21.85 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=15.3
Q ss_pred HHHcCCCEEEEEeCCchHHHHH
Q 025520 101 AIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 101 ~~~~~~d~ivv~GGDGTl~~vl 122 (251)
+...+...++++||.+.|++-+
T Consensus 68 l~~~~~~~v~iiGg~~~is~~v 89 (92)
T PF04122_consen 68 LKSLNIKKVYIIGGEGAISDSV 89 (92)
T ss_pred HHHcCCCEEEEECCCCccCHHH
Confidence 3334677888889988887643
No 343
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=26.31 E-value=4.2e+02 Score=23.56 Aligned_cols=70 Identities=16% Similarity=0.193 Sum_probs=38.8
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHH--HHHHHHcCCCEEEEEeCCchHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDI--TREAIKEGADAVIAVGGDGTLHE 120 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~--~~~~~~~~~d~ivv~GGDGTl~~ 120 (251)
..+++.++.-..- ....|+++...|++.... ....++.|-......++ ++++ ....|.++|+||--+-|.
T Consensus 153 ~~~kv~vvsQTT~----~~~~~~~i~~~l~~~~~~-~~~~~~nTIC~aT~~RQ~a~~~L-a~~vD~miVIGg~~SsNT 224 (281)
T PF02401_consen 153 DPKKVAVVSQTTQ----SVEKFEEIVEALKKRFPE-LEGPVFNTICYATQNRQEAAREL-AKEVDAMIVIGGKNSSNT 224 (281)
T ss_dssp STTCEEEEE-TTS-----HHHHHHHHHHHHHHSTC-EE-SCC-S--CHHHHHHHHHHHH-HCCSSEEEEES-TT-HHH
T ss_pred CCCeEEEEEeecc----cHHHHHHHHHHHHHhCcc-ccCCCCCCCCHhHHHHHHHHHHH-HhhCCEEEEecCCCCccH
Confidence 3578888877653 356788888888876532 22002344443333322 3344 357999999999998664
No 344
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=26.29 E-value=3.8e+02 Score=22.31 Aligned_cols=60 Identities=12% Similarity=0.149 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHhhcCCCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCchH----HHHHHHHH
Q 025520 64 KEWKKLLPYLRSRLSVDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTL----HEVVNGFF 126 (251)
Q Consensus 64 ~~~~~i~~~L~~~~~~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTl----~~vln~l~ 126 (251)
..++.++..++++ ++++.+..+.. .....+..+++...++|.|++.+.+... .+.++.+.
T Consensus 16 ~~~~gi~~~~~~~---g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~~ 80 (273)
T cd01541 16 SIIRGIESVLSEK---GYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPTKSALPNPNIDLYLKLE 80 (273)
T ss_pred HHHHHHHHHHHHc---CCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeccccccccccHHHHHHHH
Confidence 3344444555543 35554444332 2234456677778899999998876532 24455553
No 345
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=26.27 E-value=1e+02 Score=26.94 Aligned_cols=30 Identities=33% Similarity=0.398 Sum_probs=25.6
Q ss_pred CCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCC
Q 025520 105 GADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLG 151 (251)
Q Consensus 105 ~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~G 151 (251)
.+|.+|..||-+|+.|++- .+.|+.++|.-
T Consensus 250 ~ad~vIs~~G~~t~~Ea~~-----------------~g~P~l~ip~~ 279 (318)
T PF13528_consen 250 AADLVISKGGYTTISEALA-----------------LGKPALVIPRP 279 (318)
T ss_pred hCCEEEECCCHHHHHHHHH-----------------cCCCEEEEeCC
Confidence 4799999999999999987 25788888984
No 346
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=26.08 E-value=2.8e+02 Score=23.83 Aligned_cols=70 Identities=19% Similarity=0.315 Sum_probs=33.8
Q ss_pred CCeEEEEEcCCCCCCChhhHH-HHHHHHHHhhcCCCccEEE-EecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEW-KKLLPYLRSRLSVDCNICE-SLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVN 123 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~-~~i~~~L~~~~~~~~~~~~-~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln 123 (251)
.+++.+| |.|+.....+.+ ++..+.|+.. ++.+.. ...+. +..++...+. +.|.|+|.|| -|.+- +.
T Consensus 32 ~~~i~FI--PtAs~~~~~~~Yv~k~~~~l~~l---g~~v~~L~l~~~--~~~~Ie~~l~--~~d~IyVgGG-NTF~L-L~ 100 (224)
T COG3340 32 RKTIAFI--PTASVDSEDDFYVEKVRNALAKL---GLEVSELHLSKP--PLAAIENKLM--KADIIYVGGG-NTFNL-LQ 100 (224)
T ss_pred CceEEEE--ecCccccchHHHHHHHHHHHHHc---CCeeeeeeccCC--CHHHHHHhhh--hccEEEECCc-hHHHH-HH
Confidence 4566665 777655444333 4455666664 244332 22222 2333333332 3566666555 56653 33
Q ss_pred HHH
Q 025520 124 GFF 126 (251)
Q Consensus 124 ~l~ 126 (251)
.+.
T Consensus 101 ~lk 103 (224)
T COG3340 101 ELK 103 (224)
T ss_pred HHH
Confidence 343
No 347
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=26.05 E-value=3.4e+02 Score=21.67 Aligned_cols=78 Identities=10% Similarity=0.116 Sum_probs=38.0
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEe--cCCccHHHHHHHH-HHHc-CCCEEEEEeCCchHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL--TSGPSHAIDITRE-AIKE-GADAVIAVGGDGTLHEV 121 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~--t~~~~~a~~~~~~-~~~~-~~d~ivv~GGDGTl~~v 121 (251)
.+++.+|..+.. .......+.+...+++. ..++.... ........+.+.+ +... +.+.|++ .+|.....+
T Consensus 124 ~~~i~~i~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~-~~~~~a~~~ 197 (269)
T cd01391 124 WKRVALIYGDDG--AYGRERLEGFKAALKKA---GIEVVAIEYGDLDTEKGFQALLQLLKAAPKPDAIFA-CNDEMAAGA 197 (269)
T ss_pred CceEEEEecCCc--chhhHHHHHHHHHHHhc---CcEEEeccccCCCccccHHHHHHHHhcCCCCCEEEE-cCchHHHHH
Confidence 678888886653 12223333344445443 12222111 1112122333333 3333 3555555 556888888
Q ss_pred HHHHHhCC
Q 025520 122 VNGFFSAG 129 (251)
Q Consensus 122 ln~l~~~~ 129 (251)
+..+...+
T Consensus 198 ~~~~~~~g 205 (269)
T cd01391 198 LKAAREAG 205 (269)
T ss_pred HHHHHHcC
Confidence 89887543
No 348
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=26.02 E-value=1.6e+02 Score=22.92 Aligned_cols=59 Identities=17% Similarity=0.043 Sum_probs=34.9
Q ss_pred hhHHHHHH-HHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCch----HHHHHHHHH
Q 025520 63 GKEWKKLL-PYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGT----LHEVVNGFF 126 (251)
Q Consensus 63 ~~~~~~i~-~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGT----l~~vln~l~ 126 (251)
..+-+++. ..|+.. +++ ++...-....+++++.+.+++.|.|.+.+==|| +.+++..|-
T Consensus 12 HdiGkniv~~~L~~~---Gfe--VidLG~~v~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~ 75 (128)
T cd02072 12 HAVGNKILDHAFTEA---GFN--VVNLGVLSPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCD 75 (128)
T ss_pred hHHHHHHHHHHHHHC---CCE--EEECCCCCCHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHH
Confidence 34434443 345542 344 456655566778888888888998887763333 445555553
No 349
>PF01994 Trm56: tRNA ribose 2'-O-methyltransferase, aTrm56; InterPro: IPR002845 This entry represents tRNA ribose 2'-O-methyltransferase aTrm56, which specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs. The crystal structure of Pyrococcus horikoshii aTrm56 complexed with S-adenosyl-L-methionine has been determined to 2.48 A resolution. aTrm56 consists of the SPOUT domain, which contains the characteristic deep trefoil knot, and a unique C-terminal beta-hairpin []. A conserved cytidine at position 56 of tRNA contributes to the maintenance of the L-shaped tertiary structure. aTrm56 catalyzes the 2'-O-methylation of the cytidine residue in archaeal tRNA, using S-adenosyl-L-methionine. Biochemical assays showed that aTrm56 forms a dimer and prefers the L-shaped tRNA to the lambda form as its substrate [, ].; GO: 0008175 tRNA methyltransferase activity, 0002128 tRNA nucleoside ribose methylation, 0005737 cytoplasm; PDB: 2YY8_A 2O3A_B.
Probab=25.93 E-value=1.2e+02 Score=23.43 Aligned_cols=34 Identities=21% Similarity=0.188 Sum_probs=25.3
Q ss_pred EEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCc
Q 025520 83 ICESLTSGPSHAIDITREAIKEGADAVIAVGGDG 116 (251)
Q Consensus 83 ~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDG 116 (251)
..++.|-+-.+..+...++....-+.+||+|+.=
T Consensus 26 ~VVHLTMYG~~i~dvi~~Ir~~~~~~lvVVGaeK 59 (120)
T PF01994_consen 26 KVVHLTMYGENIDDVIDEIRESCKDLLVVVGAEK 59 (120)
T ss_dssp EEEEE-TTSEEHHHCHHHHHHCTSEEEEEE-SS-
T ss_pred eEEEEEecCCchHHHHHHHhccCCCEEEEECCCc
Confidence 3468898888888888888766778999999864
No 350
>PF02863 Arg_repressor_C: Arginine repressor, C-terminal domain; InterPro: IPR020899 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1B4B_B 1B4A_A 3V4G_A 1F9N_F 2P5M_A 1XXA_E 1XXC_C 1XXB_F 3LAJ_D 3BUE_D ....
Probab=25.62 E-value=63 Score=22.18 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=23.4
Q ss_pred EecCCccHHHHHHHHHHHcC-CCEEEEEeCCchH
Q 025520 86 SLTSGPSHAIDITREAIKEG-ADAVIAVGGDGTL 118 (251)
Q Consensus 86 ~~t~~~~~a~~~~~~~~~~~-~d~ivv~GGDGTl 118 (251)
...+.|+.+.-+++-+.+.. .+++-.++||.|+
T Consensus 17 vikt~pG~A~~va~~iD~~~~~~I~GtIAgdDTi 50 (70)
T PF02863_consen 17 VIKTLPGNAQAVAAAIDQLNLPEIFGTIAGDDTI 50 (70)
T ss_dssp EEEESTTCHHHHHHHHHHHCGTTEEEEEEESSEE
T ss_pred EEEeCCCcHHHHHHHHHhcCCcccEEEEeCCCEE
Confidence 33446888888877776543 4688888889886
No 351
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=25.47 E-value=4.6e+02 Score=26.68 Aligned_cols=63 Identities=17% Similarity=0.184 Sum_probs=35.7
Q ss_pred CCCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHH
Q 025520 42 SSSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHE 120 (251)
Q Consensus 42 ~~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~ 120 (251)
.....++++||=|-.+ ....+...|+.. +.++.+...... .++ ....++|.||+.||-|+..+
T Consensus 512 ~~~~~~~IlVID~gds-------~~~~l~~~L~~~---G~~v~vv~~~~~---~~~---~~~~~~DgLILsgGPGsp~d 574 (717)
T TIGR01815 512 RGGEGRRILLVDHEDS-------FVHTLANYLRQT---GASVTTLRHSHA---EAA---FDERRPDLVVLSPGPGRPAD 574 (717)
T ss_pred CCCCCCEEEEEECCCh-------hHHHHHHHHHHC---CCeEEEEECCCC---hhh---hhhcCCCEEEEcCCCCCchh
Confidence 3445678888876432 122355666664 244444333221 111 12346899999999999764
No 352
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.41 E-value=3.9e+02 Score=22.10 Aligned_cols=46 Identities=20% Similarity=0.154 Sum_probs=26.3
Q ss_pred HHHHHHHHhhcCCCccEEEEecCCc-cHHHHHHHHHHHcCCCEEEEEeCC
Q 025520 67 KKLLPYLRSRLSVDCNICESLTSGP-SHAIDITREAIKEGADAVIAVGGD 115 (251)
Q Consensus 67 ~~i~~~L~~~~~~~~~~~~~~t~~~-~~a~~~~~~~~~~~~d~ivv~GGD 115 (251)
+.+...+++. ++++.+..+... ....+..+.+...+.|.|++.+.|
T Consensus 19 ~gi~~~~~~~---gy~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~ 65 (265)
T cd06290 19 KGMERGLNGS---GYSPIIATGHWNQSRELEALELLKSRRVDALILLGGD 65 (265)
T ss_pred HHHHHHHHHC---CCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 3344444442 355544444322 233355666777789999999876
No 353
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=25.39 E-value=4.7e+02 Score=23.87 Aligned_cols=77 Identities=5% Similarity=0.034 Sum_probs=43.8
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEE--EecC---CccHHHHHHHHHHHcCCCEEEEEeCCchHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICE--SLTS---GPSHAIDITREAIKEGADAVIAVGGDGTLH 119 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~--~~t~---~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~ 119 (251)
+.+++.+|.--. .-+...++.+...+++. +.++.. .... ...+...+++++...+.|+|++.+......
T Consensus 175 ~~k~vaii~~~~---~~g~~~~~~~~~~l~~~---gi~i~~~~~~~~~~~~~~d~~~~l~~i~~~~~dvIil~~~~~~~~ 248 (410)
T cd06363 175 GWNWVAFLGSDD---EYGRDGLQLFSELIANT---GICIAYQGLIPLDTDPETDYQQILKQINQTKVNVIVVFASRQPAE 248 (410)
T ss_pred CCcEEEEEEeCC---hhHHHHHHHHHHHHHHC---CeEEEEEEEecCCCchHHHHHHHHHHHhcCCCeEEEEEcChHHHH
Confidence 566777776311 12233444555556543 233321 1111 234667777777777888888877666666
Q ss_pred HHHHHHHh
Q 025520 120 EVVNGFFS 127 (251)
Q Consensus 120 ~vln~l~~ 127 (251)
.++..+.+
T Consensus 249 ~il~qa~~ 256 (410)
T cd06363 249 AFFNSVIQ 256 (410)
T ss_pred HHHHHHHh
Confidence 77777654
No 354
>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act
Probab=25.35 E-value=5e+02 Score=23.36 Aligned_cols=78 Identities=10% Similarity=0.101 Sum_probs=48.9
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNG 124 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~ 124 (251)
..+++.+|+-..-+ +..+...|+........+.+.......+...+.+++...+.++||+-+---....+++.
T Consensus 133 ~W~~v~~iYe~d~~-------l~~L~~~l~~~~~~~~~i~~~~~~~~~d~~~~L~~ik~~~~~~iVv~~~~~~a~~il~q 205 (333)
T cd06394 133 NYPTASLICAKAEC-------LLRLEELLRQFLISKETLSVRMLDDSRDPTPLLKEIRDDKTATIIIDANASMSHTILLK 205 (333)
T ss_pred CCCEEEEEEeCcHH-------HHHHHHHHHhhcccCCceeeEEccCcccHHHHHHHHHhcCCCEEEEECChHHHHHHHHH
Confidence 45777777754321 22333444433222233434444455678888888888899999998888888888887
Q ss_pred HHhCC
Q 025520 125 FFSAG 129 (251)
Q Consensus 125 l~~~~ 129 (251)
..+.+
T Consensus 206 a~~lG 210 (333)
T cd06394 206 ASELG 210 (333)
T ss_pred HHHcC
Confidence 76544
No 355
>CHL00101 trpG anthranilate synthase component 2
Probab=25.35 E-value=2e+02 Score=23.56 Aligned_cols=45 Identities=11% Similarity=0.108 Sum_probs=26.9
Q ss_pred HHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHH
Q 025520 68 KLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHE 120 (251)
Q Consensus 68 ~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~ 120 (251)
.+.+.|+.. +.++.+...... +.. ++...++|.||+.||.|+..+
T Consensus 14 ~l~~~l~~~---g~~~~v~~~~~~-~~~----~~~~~~~dgiiisgGpg~~~~ 58 (190)
T CHL00101 14 NLVQSLGEL---NSDVLVCRNDEI-DLS----KIKNLNIRHIIISPGPGHPRD 58 (190)
T ss_pred HHHHHHHhc---CCCEEEEECCCC-CHH----HHhhCCCCEEEECCCCCChHH
Confidence 356667664 244544443321 222 233357899999999999866
No 356
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=25.16 E-value=1.2e+02 Score=29.08 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=25.1
Q ss_pred ccHHHHHHHHHHHcCC---CEEEEEeCCchHHHHHHHHHh
Q 025520 91 PSHAIDITREAIKEGA---DAVIAVGGDGTLHEVVNGFFS 127 (251)
Q Consensus 91 ~~~a~~~~~~~~~~~~---d~ivv~GGDGTl~~vln~l~~ 127 (251)
-+...++...+.+.+. |.||++|| |++.+++..+..
T Consensus 220 l~~v~~~~~~l~~~~~~R~d~viaiGG-G~v~D~agf~A~ 258 (488)
T PRK13951 220 LEHVSRAYYELVRMDFPRGKTIAGVGG-GALTDFTGFVAS 258 (488)
T ss_pred HHHHHHHHHHHHHcCCCCCCeEEEECC-hHHHHHHHHHHH
Confidence 3455566667777777 88888877 787777766554
No 357
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=25.14 E-value=2.1e+02 Score=21.51 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=10.1
Q ss_pred HHHHHHHHHHcCCCEEEEEeCC
Q 025520 94 AIDITREAIKEGADAVIAVGGD 115 (251)
Q Consensus 94 a~~~~~~~~~~~~d~ivv~GGD 115 (251)
+.++++.+.+...+..+++||-
T Consensus 55 ~~~~~~~ik~~~p~~~iv~GG~ 76 (127)
T cd02068 55 ALELAKIAKEVLPNVIVVVGGP 76 (127)
T ss_pred HHHHHHHHHHHCCCCEEEECCc
Confidence 3444444433344555555553
No 358
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=24.88 E-value=4.2e+02 Score=23.18 Aligned_cols=80 Identities=11% Similarity=0.079 Sum_probs=44.1
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEE--EecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICE--SLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~--~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
..+++.+|..... -....++.+...+++.. ..+++.. .......+...+++++...+.|.|++++...-.-.++
T Consensus 137 ~~~~v~~l~~~~~---~g~~~~~~~~~~~~~~g-~~~~~v~~~~~~~~~~d~~~~v~~i~~~~~d~ii~~~~~~~~~~~~ 212 (346)
T cd06330 137 KAKTWATINPDYA---YGQDAWADFKAALKRLR-PDVEVVSEQWPKLGAPDYGSEITALLAAKPDAIFSSLWGGDLVTFV 212 (346)
T ss_pred CccEEEEECCchH---HHHHHHHHHHHHHHHhC-CCCeecccccCCCCCcccHHHHHHHHhcCCCEEEEecccccHHHHH
Confidence 4677777763322 12233444555565531 1222211 1112345667777888788899988886545556677
Q ss_pred HHHHhC
Q 025520 123 NGFFSA 128 (251)
Q Consensus 123 n~l~~~ 128 (251)
..+...
T Consensus 213 ~~~~~~ 218 (346)
T cd06330 213 RQANAR 218 (346)
T ss_pred HHHHhc
Confidence 776543
No 359
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=24.83 E-value=4.4e+02 Score=23.05 Aligned_cols=77 Identities=12% Similarity=0.018 Sum_probs=42.1
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNG 124 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~ 124 (251)
..+++.++.+...- + +...+.+...++. ...-.........+...++.++.+.++|.|++.+-.+-...++..
T Consensus 133 g~~~vail~~~~~~-g--~~~~~~~~~~~~~----~v~~~~~~~~~~~d~~~~i~~l~~~~pd~v~~~~~~~~~~~~~~~ 205 (333)
T cd06359 133 GYKRVFLIAPNYQA-G--KDALAGFKRTFKG----EVVGEVYTKLGQLDFSAELAQIRAAKPDAVFVFLPGGMGVNFVKQ 205 (333)
T ss_pred CCCeEEEEecCchh-h--HHHHHHHHHHhCc----eeeeeecCCCCCcchHHHHHHHHhCCCCEEEEEccCccHHHHHHH
Confidence 57899999875532 2 2333333333321 111111222233466667788888899999886544445566677
Q ss_pred HHhC
Q 025520 125 FFSA 128 (251)
Q Consensus 125 l~~~ 128 (251)
+...
T Consensus 206 ~~~~ 209 (333)
T cd06359 206 YRQA 209 (333)
T ss_pred HHHc
Confidence 6543
No 360
>PF10931 DUF2735: Protein of unknown function (DUF2735); InterPro: IPR021232 Some members in this family of proteins are annotated as glutamine synthetase translation inhibitor however this function can not be confirmed.
Probab=24.62 E-value=50 Score=21.54 Aligned_cols=8 Identities=38% Similarity=0.762 Sum_probs=7.3
Q ss_pred eeeccCCC
Q 025520 4 LSQFALGR 11 (251)
Q Consensus 4 ~~~~~~~~ 11 (251)
|||||.|.
T Consensus 4 IYQFPvgg 11 (51)
T PF10931_consen 4 IYQFPVGG 11 (51)
T ss_pred Eeeccccc
Confidence 89999987
No 361
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=24.61 E-value=1.9e+02 Score=25.35 Aligned_cols=55 Identities=27% Similarity=0.415 Sum_probs=32.7
Q ss_pred HHHHHHHHhhcCCCccEEE--EecCCccHHHHHHHHHHHcCCCEEEEEeCCc------hHHHHHHHH
Q 025520 67 KKLLPYLRSRLSVDCNICE--SLTSGPSHAIDITREAIKEGADAVIAVGGDG------TLHEVVNGF 125 (251)
Q Consensus 67 ~~i~~~L~~~~~~~~~~~~--~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDG------Tl~~vln~l 125 (251)
..+.+.|..+ ++++.. ...+.+.+..+..+.+... +|+||+-||=| |...++..+
T Consensus 24 ~~la~~L~~~---G~~v~~~~~VgD~~~~I~~~l~~a~~r-~D~vI~tGGLGPT~DDiT~e~vAka~ 86 (255)
T COG1058 24 AFLADELTEL---GVDLARITTVGDNPDRIVEALREASER-ADVVITTGGLGPTHDDLTAEAVAKAL 86 (255)
T ss_pred HHHHHHHHhc---CceEEEEEecCCCHHHHHHHHHHHHhC-CCEEEECCCcCCCccHhHHHHHHHHh
Confidence 3355666664 344432 3344455555555555555 99999999955 665555554
No 362
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=24.59 E-value=4.6e+02 Score=22.64 Aligned_cols=69 Identities=14% Similarity=0.091 Sum_probs=36.4
Q ss_pred CCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCC
Q 025520 43 SSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGD 115 (251)
Q Consensus 43 ~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGD 115 (251)
+++.+.+.+++...+ +.-.....+.+...+.+. ++++.+..+.. ++...+..+.+...+.|.+|+.+.+
T Consensus 56 ~~~~~~Ig~i~~~~~-~~~~~~~~~~i~~~~~~~---gy~~~i~~~~~~~~~~~~~~~~l~~~~vdGvIi~~~~ 125 (311)
T TIGR02405 56 GGSDKVVAVIVSRLD-SPSENLAVSGMLPVFYTA---GYDPIIMESQFSPQLTNEHLSVLQKRNVDGVILFGFT 125 (311)
T ss_pred cCCCCEEEEEeCCcc-cccHHHHHHHHHHHHHHC---CCeEEEecCCCChHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 345567888883222 111223334444455542 45554443432 3333344555666789999998754
No 363
>PF09954 DUF2188: Uncharacterized protein conserved in bacteria (DUF2188); InterPro: IPR018691 This family has no known function.
Probab=24.59 E-value=50 Score=21.90 Aligned_cols=32 Identities=31% Similarity=0.482 Sum_probs=25.7
Q ss_pred CCccHHHHHHHHHHHcC-CCEEEEEeCCchHHH
Q 025520 89 SGPSHAIDITREAIKEG-ADAVIAVGGDGTLHE 120 (251)
Q Consensus 89 ~~~~~a~~~~~~~~~~~-~d~ivv~GGDGTl~~ 120 (251)
....+|.+.++++++++ .--|+|=+-||.|.+
T Consensus 26 ~Tk~eAi~~Ar~~a~~~~~~el~Ih~~dG~i~~ 58 (62)
T PF09954_consen 26 DTKAEAIEAARELAKNQGGGELIIHGRDGKIRE 58 (62)
T ss_pred CcHHHHHHHHHHHHHhCCCcEEEEECCCCeEEE
Confidence 44678999999988765 678999999998754
No 364
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=24.48 E-value=1.7e+02 Score=25.88 Aligned_cols=58 Identities=17% Similarity=0.217 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHc--CCCEEEEEeCCchHHH
Q 025520 63 GKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKE--GADAVIAVGGDGTLHE 120 (251)
Q Consensus 63 ~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~--~~d~ivv~GGDGTl~~ 120 (251)
.+.+.++..+|+...+..+++...+-+.+++...+..++..+ ..|++|-.-|=|+...
T Consensus 40 ~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~~IdvLVNNAG~g~~g~ 99 (265)
T COG0300 40 EDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGGPIDVLVNNAGFGTFGP 99 (265)
T ss_pred HHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcCCcccEEEECCCcCCccc
Confidence 455566666676543222334344555667777777777665 6799999888887763
No 365
>PRK09982 universal stress protein UspD; Provisional
Probab=24.41 E-value=1.5e+02 Score=22.66 Aligned_cols=50 Identities=12% Similarity=0.071 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCC
Q 025520 93 HAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLG 151 (251)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~G 151 (251)
-+..+++.+...++|.||+.-+-+.+..++ +. .. ..-....+|+-++|.-
T Consensus 91 p~~~I~~~A~~~~aDLIVmG~~~~~~~~~~-~v-a~-------~V~~~s~~pVLvv~~~ 140 (142)
T PRK09982 91 MPETLLEIMQKEQCDLLVCGHHHSFINRLM-PA-YR-------GMINKMSADLLIVPFI 140 (142)
T ss_pred HHHHHHHHHHHcCCCEEEEeCChhHHHHHH-HH-HH-------HHHhcCCCCEEEecCC
Confidence 345555555567889888876655555555 21 11 1123567888888864
No 366
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=24.38 E-value=3.9e+02 Score=21.72 Aligned_cols=87 Identities=13% Similarity=0.140 Sum_probs=45.9
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchH---HHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTL---HEVVN 123 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl---~~vln 123 (251)
++++||=|-.|-. ..+...|+.. +.++.++.... .+.. ++ +.+|.||+.||-|.- .+...
T Consensus 2 ~~iliid~~dsf~-------~~i~~~l~~~---g~~~~v~~~~~-~~~~----~l--~~~d~iIi~gGp~~~~~~~~~~~ 64 (190)
T PRK06895 2 TKLLIINNHDSFT-------FNLVDLIRKL---GVPMQVVNVED-LDLD----EV--ENFSHILISPGPDVPRAYPQLFA 64 (190)
T ss_pred cEEEEEeCCCchH-------HHHHHHHHHc---CCcEEEEECCc-cChh----Hh--ccCCEEEECCCCCChHHhhHHHH
Confidence 6788888755421 2256667764 24444443322 1111 11 358999999999932 22222
Q ss_pred HHHhCCcccccccccccCCceEEEecCCChhHHhhhcCC
Q 025520 124 GFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGW 162 (251)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~ 162 (251)
+++. ...+.|+--|=+|- -.++..+|.
T Consensus 65 -~i~~----------~~~~~PiLGIClG~-Qlla~~~Gg 91 (190)
T PRK06895 65 -MLER----------YHQHKSILGVCLGH-QTLCEFFGG 91 (190)
T ss_pred -HHHH----------hcCCCCEEEEcHHH-HHHHHHhCC
Confidence 2211 12345665566665 366677664
No 367
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=24.37 E-value=1.2e+02 Score=25.93 Aligned_cols=35 Identities=17% Similarity=0.163 Sum_probs=30.1
Q ss_pred EEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 85 ESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 85 ~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
.+.++++.++...+++. ..++|.|-|||=-+|..+
T Consensus 64 ~i~~~np~~l~~~V~k~---~~~vv~V~GGd~~vNR~A 98 (216)
T PRK03892 64 LLVTPKPSLIREVKQRF---LNYLIYVQGGDLRVNRYA 98 (216)
T ss_pred EEecCCHHHHHHHHHhc---cceEEEEECCcHHHHHHH
Confidence 35778888888888877 588999999999999988
No 368
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=24.20 E-value=1.4e+02 Score=24.53 Aligned_cols=22 Identities=36% Similarity=0.385 Sum_probs=17.4
Q ss_pred CCC-EEEEEeCCchHHHHHHHHH
Q 025520 105 GAD-AVIAVGGDGTLHEVVNGFF 126 (251)
Q Consensus 105 ~~d-~ivv~GGDGTl~~vln~l~ 126 (251)
..| .|+.-||=||+.|+...+.
T Consensus 96 ~sda~I~lPGG~GTL~El~e~~~ 118 (178)
T TIGR00730 96 LADAFIAMPGGFGTLEELFEVLT 118 (178)
T ss_pred hCCEEEEcCCCcchHHHHHHHHH
Confidence 355 5666799999999999885
No 369
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli
Probab=23.95 E-value=5.4e+02 Score=23.20 Aligned_cols=81 Identities=11% Similarity=0.179 Sum_probs=43.6
Q ss_pred CCCeEEEEEc-CCCCCCChhhHHHHHHHHHHhhcCCCccEEEE-ecCC--ccHHHHHHHHHHHcCCCEEEEEeCCchHHH
Q 025520 45 RRRDLVFVVN-PRGASGRTGKEWKKLLPYLRSRLSVDCNICES-LTSG--PSHAIDITREAIKEGADAVIAVGGDGTLHE 120 (251)
Q Consensus 45 ~~~~i~vivN-P~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~-~t~~--~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~ 120 (251)
..+++.+|+. ...+........+.+...+++. +..+... .... ..+...+.+++.... |+|++.+-......
T Consensus 141 ~w~~vaii~~~~~~~~~~~~~~~~~~~~~~~~~---g~~v~~~~~~~~~~~~d~~~~l~~ik~~~-~vii~~~~~~~~~~ 216 (396)
T cd06373 141 NWSRAALLYHDDKNDDRPCYFTLEGVYTVLKEE---NITVSDFPFDEDKELDDYKELLRDISKKG-RVVIMCASPDTVRE 216 (396)
T ss_pred CCeEEEEEEECCCCCcchHHHHHHHHHHHHhhc---CceeeEEeecCCccccCHHHHHHHHHhcC-cEEEEecCHHHHHH
Confidence 5788998864 3332111122334455555543 2222221 1222 256777777776654 77777776666666
Q ss_pred HHHHHHhCC
Q 025520 121 VVNGFFSAG 129 (251)
Q Consensus 121 vln~l~~~~ 129 (251)
++..+.+.+
T Consensus 217 ~~~qa~~~g 225 (396)
T cd06373 217 IMLAAHRLG 225 (396)
T ss_pred HHHHHHHcC
Confidence 777665443
No 370
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=23.92 E-value=52 Score=26.29 Aligned_cols=15 Identities=20% Similarity=0.217 Sum_probs=8.6
Q ss_pred CceEEEecCCChhHHh
Q 025520 142 STALGLIPLGTGSDFA 157 (251)
Q Consensus 142 ~~~lgilP~GTgN~fa 157 (251)
++.+.+|=+|| ||+.
T Consensus 57 ~pd~vii~~G~-ND~~ 71 (177)
T cd01844 57 PADLYIIDCGP-NIVG 71 (177)
T ss_pred CCCEEEEEecc-CCCc
Confidence 45566666666 5543
No 371
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=23.77 E-value=4.8e+02 Score=22.57 Aligned_cols=68 Identities=15% Similarity=0.220 Sum_probs=34.5
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCc
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDG 116 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDG 116 (251)
.+.+.+.|++. .-. ...|.++...+...+. .++++.+..+.. .+...++.+.+...+.|.||+.+-+.
T Consensus 57 ~~~~~Igvv~~-~~~----~~f~~~l~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~ 126 (329)
T TIGR01481 57 KRTTTVGVIIP-DIS----NIYYAELARGIEDIATMYKYNIILSNSDEDPEKEVQVLNTLLSKQVDGIIFMGGTI 126 (329)
T ss_pred CCCCEEEEEeC-CCC----chhHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 34567777773 321 2344444433332221 235554443332 22334455566677899999987543
No 372
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=23.72 E-value=5.4e+02 Score=23.16 Aligned_cols=79 Identities=13% Similarity=0.087 Sum_probs=45.7
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFF 126 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~ 126 (251)
|++.+|..-.+ =+ ....+.+.+.|+..... ............+...++.++...+.|+|++.|--.+...++..+.
T Consensus 149 k~v~ii~~~~~-yg--~~~~~~~~~~l~~~G~~-~~~~~~~~~~~~~~~~~v~~i~~~~~d~v~~~~~~~~~~~~~r~~~ 224 (366)
T COG0683 149 KRVAIIGDDYA-YG--EGLADAFKAALKALGGE-VVVEEVYAPGDTDFSALVAKIKAAGPDAVLVGGYGPDAALFLRQAR 224 (366)
T ss_pred cEEEEEeCCCC-cc--hhHHHHHHHHHHhCCCe-EEEEEeeCCCCCChHHHHHHHHhcCCCEEEECCCCccchHHHHHHH
Confidence 46666665443 22 34445566677765322 1111223333334778888888888997777766667777777776
Q ss_pred hCC
Q 025520 127 SAG 129 (251)
Q Consensus 127 ~~~ 129 (251)
.++
T Consensus 225 ~~G 227 (366)
T COG0683 225 EQG 227 (366)
T ss_pred HcC
Confidence 543
No 373
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=23.63 E-value=1.9e+02 Score=23.75 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=27.1
Q ss_pred HHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCC
Q 025520 95 IDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAG 129 (251)
Q Consensus 95 ~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~ 129 (251)
.+.++......+|.++.+-|||=+--+++.+.+.+
T Consensus 100 ~D~~~l~~~~~~D~ivl~SgD~DF~p~v~~~~~~G 134 (181)
T COG1432 100 VDAMELADKKNVDTIVLFSGDGDFIPLVEAARDKG 134 (181)
T ss_pred HHHHHhhcccCCCEEEEEcCCccHHHHHHHHHHcC
Confidence 34444444568999999999999999999987543
No 374
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=23.54 E-value=5e+02 Score=22.66 Aligned_cols=77 Identities=1% Similarity=-0.059 Sum_probs=39.3
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTLHEVVN 123 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln 123 (251)
+.+.+.+++ |.....--...++.+...+++. ++++.+..+.. ++...+..+.+...+.|.|++.+.+-+- +.+.
T Consensus 58 ~~~~i~vi~-~~~~~~~~~~~~~gi~~~~~~~---g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~-~~~~ 132 (341)
T PRK10703 58 HTKSIGLLA-TSSEAPYFAEIIEAVEKNCYQK---GYTLILCNAWNNLEKQRAYLSMLAQKRVDGLLVMCSEYPE-PLLA 132 (341)
T ss_pred CCCeEEEEe-CCCCCchHHHHHHHHHHHHHHC---CCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCH-HHHH
Confidence 334566665 5433222222233333444432 35554444332 3333455666777789999998876433 4455
Q ss_pred HHH
Q 025520 124 GFF 126 (251)
Q Consensus 124 ~l~ 126 (251)
.|.
T Consensus 133 ~l~ 135 (341)
T PRK10703 133 MLE 135 (341)
T ss_pred HHH
Confidence 553
No 375
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=23.48 E-value=3.5e+02 Score=26.37 Aligned_cols=76 Identities=17% Similarity=0.220 Sum_probs=36.1
Q ss_pred CCCCCeEEEEEcCCCCCCChhhHHHHHHH-HHHhh---cCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchH
Q 025520 43 SSRRRDLVFVVNPRGASGRTGKEWKKLLP-YLRSR---LSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTL 118 (251)
Q Consensus 43 ~~~~~~i~vivNP~sg~g~~~~~~~~i~~-~L~~~---~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl 118 (251)
..++++|.|+. |.||+- ...-+.|.. .+... ......+.+++|... ++..+.+++..++.|.|| |=|
T Consensus 216 ~~~~~~IavLL-PlsG~~--a~~~~aI~~G~~aA~~~~~~~~~~l~~~Dt~~~-~~~~~~~~a~~~ga~~Vi-----GPL 286 (536)
T PF04348_consen 216 PAPPQRIAVLL-PLSGRL--ARAGQAIRDGFLAAYYADADSRPELRFYDTNAD-SADALYQQAVADGADFVI-----GPL 286 (536)
T ss_dssp ------EEEEE---SSTT--HHHHHHHHHHHHHHH---TT--S-EEEEETTTS--HHHHHHHHHHTT--EEE--------
T ss_pred cCCccCEEEEe-CCCCch--hHHHHHHHHHHHHhhcccccCCCceEEecCCCC-CHHHHHHHHHHcCCCEEE-----cCC
Confidence 45677888887 677652 233333433 33333 223456777886544 777888888889999888 444
Q ss_pred -HHHHHHHHh
Q 025520 119 -HEVVNGFFS 127 (251)
Q Consensus 119 -~~vln~l~~ 127 (251)
-+-|..|..
T Consensus 287 ~k~~V~~l~~ 296 (536)
T PF04348_consen 287 LKSNVEALAQ 296 (536)
T ss_dssp SHHHHHHHHH
T ss_pred CHHHHHHHHh
Confidence 555666654
No 376
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=23.40 E-value=4.8e+02 Score=22.44 Aligned_cols=77 Identities=10% Similarity=0.007 Sum_probs=41.8
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNG 124 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~ 124 (251)
..+++.++.+... - +....+.+.+.++ + .............+...+++++.+.++|.|++.+...-...+++.
T Consensus 133 g~~~v~il~~~~~-~--~~~~~~~~~~~~~---~-~~~~~~~~~~~~~d~~~~i~~l~~~~~d~i~~~~~~~~~~~~~~~ 205 (333)
T cd06332 133 GYKKVVIIAPDYA-A--GKDAVAGFKRTFK---G-EVVEEVYTPLGQLDFSAELAQIRAAKPDAVFVFLPGGMAVNFVKQ 205 (333)
T ss_pred CCceEEEEecCcc-h--hHHHHHHHHHhhc---E-EEeeEEecCCCCcchHHHHHHHHhcCCCEEEEecccchHHHHHHH
Confidence 3678888875432 2 2233344444443 1 111111122223455566777777789998887654666677777
Q ss_pred HHhC
Q 025520 125 FFSA 128 (251)
Q Consensus 125 l~~~ 128 (251)
+...
T Consensus 206 ~~~~ 209 (333)
T cd06332 206 YDQA 209 (333)
T ss_pred HHHc
Confidence 7643
No 377
>PRK09739 hypothetical protein; Provisional
Probab=23.34 E-value=4.1e+02 Score=21.67 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=19.1
Q ss_pred CCeEEEEE-cCCCCCCChhhHHHHHHHHHHhh
Q 025520 46 RRDLVFVV-NPRGASGRTGKEWKKLLPYLRSR 76 (251)
Q Consensus 46 ~~~i~viv-NP~sg~g~~~~~~~~i~~~L~~~ 76 (251)
++++++|. +|+. .+.+....+.+...+++.
T Consensus 3 mmkiliI~~sp~~-~s~s~~l~~~~~~~~~~~ 33 (199)
T PRK09739 3 SMRIYLVWAHPRH-DSLTAKVAEAIHQRAQER 33 (199)
T ss_pred CceEEEEEcCCCC-CCcHHHHHHHHHHHHHHC
Confidence 45566664 7776 355666677777777754
No 378
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=23.18 E-value=4.3e+02 Score=21.73 Aligned_cols=82 Identities=11% Similarity=0.067 Sum_probs=41.6
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEe-cCCccHHHHHHHHHHHcC-CCEEEEEeCCchHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL-TSGPSHAIDITREAIKEG-ADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~-t~~~~~a~~~~~~~~~~~-~d~ivv~GGDGTl~~vl 122 (251)
..+++.++..+.........+++.+...++.... ....... ..+.+.+.+.++++.+.. .+.| ++.+|.+...++
T Consensus 113 g~~~i~~v~~~~~~~~~~~~r~~gf~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i-~~~~d~~a~g~~ 189 (259)
T cd01542 113 GHKNIAYLGVSESDIAVGILRKQGYLDALKEHGI--CPPNIVETDFSYESAYEAAQELLEPQPPDAI-VCATDTIALGAM 189 (259)
T ss_pred CCCcEEEEcCCcccchhHHHHHHHHHHHHHHcCC--ChHHeeeccCchhhHHHHHHHHhcCCCCCEE-EEcCcHHHHHHH
Confidence 4567777753322112223444555555654321 0111122 223445556666665443 4544 455588888899
Q ss_pred HHHHhCC
Q 025520 123 NGFFSAG 129 (251)
Q Consensus 123 n~l~~~~ 129 (251)
+.|...+
T Consensus 190 ~~l~~~g 196 (259)
T cd01542 190 KYLQELG 196 (259)
T ss_pred HHHHHcC
Confidence 9887644
No 379
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=23.12 E-value=5.5e+02 Score=23.00 Aligned_cols=82 Identities=10% Similarity=0.175 Sum_probs=48.3
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCc--cEEE--EecCCccHHHHHHHHHHHcCCCEEEEEeCCchHH
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDC--NICE--SLTSGPSHAIDITREAIKEGADAVIAVGGDGTLH 119 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~--~~~~--~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~ 119 (251)
-+.+++.+|+--..- | ....+.+.+.+++.. ... ++.. .......+....++++...+.|+|++.+..-...
T Consensus 152 ~~w~~vaii~~~~~~-g--~~~~~~~~~~~~~~g-~~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~vIvl~~~~~~~~ 227 (377)
T cd06379 152 FKWNKVILLVSDDHE-G--RAAQKRFETLLEERE-IEFKIKVEKVVEFEPGEKNVTSLLQEAKELTSRVILLSASEDDAA 227 (377)
T ss_pred cCCeEEEEEEEcCcc-h--hHHHHHHHHHHHhcC-CccceeeeEEEecCCchhhHHHHHHHHhhcCCeEEEEEcCHHHHH
Confidence 366788888753321 1 223344555555432 100 2221 1222334566677777777899999988888888
Q ss_pred HHHHHHHhCC
Q 025520 120 EVVNGFFSAG 129 (251)
Q Consensus 120 ~vln~l~~~~ 129 (251)
.++..+.+.+
T Consensus 228 ~l~~qa~~~g 237 (377)
T cd06379 228 VIYRNAGMLN 237 (377)
T ss_pred HHHHHHHHcC
Confidence 8888887654
No 380
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=22.87 E-value=4.5e+02 Score=21.94 Aligned_cols=34 Identities=15% Similarity=0.015 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCchH-HHHHHHHHh
Q 025520 93 HAIDITREAIKEGADAVIAVGGDGTL-HEVVNGFFS 127 (251)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGTl-~~vln~l~~ 127 (251)
...+..+.+.. +.|.|++...+.+. .+.++.+.+
T Consensus 47 ~~~~~i~~~~~-~vdgiii~~~~~~~~~~~i~~~~~ 81 (275)
T cd06307 47 ALAAALLRLGA-RSDGVALVAPDHPQVRAAVARLAA 81 (275)
T ss_pred HHHHHHHHHHh-cCCEEEEeCCCcHHHHHHHHHHHH
Confidence 34455556666 89999999988764 466777753
No 381
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=22.78 E-value=3.8e+02 Score=21.65 Aligned_cols=98 Identities=19% Similarity=0.210 Sum_probs=49.8
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHH-cCCCEEEEEe----CCc---
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIK-EGADAVIAVG----GDG--- 116 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~-~~~d~ivv~G----GDG--- 116 (251)
..-|+.|++- +-...-.++..+.....|+.+....-++.++.....-+.--.++++++ .++|.||++| |+-
T Consensus 11 ~~~riaIV~a-rfn~~I~d~ll~gA~~~l~~~G~~~~~i~vv~VPGa~EiPl~a~~La~~~~yDAvv~lG~VIrG~T~Hf 89 (152)
T COG0054 11 KGLRIAIVVA-RFNDDITDALLEGAVDALKRHGADVDNIDVVRVPGAFEIPLAAKKLARTGKYDAVVALGAVIRGETYHF 89 (152)
T ss_pred CCceEEEEEe-ehhHHHHHHHHHHHHHHHHHcCCCcccceEEEeCCcchhHHHHHHHHhcCCcceEEEEeeEEeCCCccH
Confidence 3346666552 221122233334444556554322112445555555566666677664 4699999887 433
Q ss_pred --hHHHHHHHHHhCCcccccccccccCCceEEEecC
Q 025520 117 --TLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPL 150 (251)
Q Consensus 117 --Tl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~ 150 (251)
--+++..+|.+-. -+....+.+|+|-.
T Consensus 90 d~Va~~~~~gl~~vs-------l~~~~PV~~GVLt~ 118 (152)
T COG0054 90 DYVANEVARGLMDVS-------LETGVPVTFGVLTT 118 (152)
T ss_pred HHHHHHHHHHHHHHH-------HhhCCCeEeeecCC
Confidence 2456667776432 12233445666644
No 382
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=22.77 E-value=3.9e+02 Score=21.64 Aligned_cols=85 Identities=12% Similarity=0.092 Sum_probs=46.7
Q ss_pred eEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeC--CchHHHHHHHH
Q 025520 48 DLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGG--DGTLHEVVNGF 125 (251)
Q Consensus 48 ~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GG--DGTl~~vln~l 125 (251)
+++|++-... |.+.+..+.+...|.. +.++.++....... ..-.++|.||+.++ -|.+...+..+
T Consensus 2 kilIvY~S~~--G~T~~iA~~Ia~~l~~----g~~v~~~~~~~~~~-------~~l~~yD~vIlGspi~~G~~~~~~~~f 68 (177)
T PRK11104 2 KTLILYSSRD--GQTRKIASYIASELKE----GIQCDVVNLHRIEE-------PDLSDYDRVVIGASIRYGHFHSALYKF 68 (177)
T ss_pred cEEEEEECCC--ChHHHHHHHHHHHhCC----CCeEEEEEhhhcCc-------cCHHHCCEEEEECccccCCcCHHHHHH
Confidence 6788887665 5566666666555543 22333333221110 11235898777765 46666666666
Q ss_pred HhCCcccccccccccCCceEEEecCCC
Q 025520 126 FSAGKLVTNHNRESAHSTALGLIPLGT 152 (251)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~lgilP~GT 152 (251)
+... .......+++++-.|-
T Consensus 69 l~~~-------~~~l~~K~v~~F~v~l 88 (177)
T PRK11104 69 VKKH-------ATQLNQMPSAFFSVNL 88 (177)
T ss_pred HHHH-------HHHhCCCeEEEEEech
Confidence 5422 0123456788888773
No 383
>PRK04280 arginine repressor; Provisional
Probab=22.71 E-value=2.4e+02 Score=22.51 Aligned_cols=35 Identities=20% Similarity=0.105 Sum_probs=26.2
Q ss_pred EEecCCccHHHHHHHHHHHcC-CCEEEEEeCCchHH
Q 025520 85 ESLTSGPSHAIDITREAIKEG-ADAVIAVGGDGTLH 119 (251)
Q Consensus 85 ~~~t~~~~~a~~~~~~~~~~~-~d~ivv~GGDGTl~ 119 (251)
++.-+.|+.|..++.-+...+ .+++-.++||-|+-
T Consensus 93 vvikT~pG~A~~va~~iD~~~~~eI~GTIAGdDTil 128 (148)
T PRK04280 93 LVLKTLPGNANSIGALIDNLDWDEILGTICGDDTCL 128 (148)
T ss_pred EEEEcCCChHHHHHHHHHhCCCCCeEEEEecCCEEE
Confidence 345567899988888777644 56888899999863
No 384
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=22.71 E-value=4.1e+02 Score=24.77 Aligned_cols=49 Identities=22% Similarity=0.371 Sum_probs=27.1
Q ss_pred HHHHHHhhcCCCccEEEEecCCcc-------HHHHHHHHHHHcCCCEEEEEeCCchHHHHHHH
Q 025520 69 LLPYLRSRLSVDCNICESLTSGPS-------HAIDITREAIKEGADAVIAVGGDGTLHEVVNG 124 (251)
Q Consensus 69 i~~~L~~~~~~~~~~~~~~t~~~~-------~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~ 124 (251)
.+..|+.. ++.+++++...++ ++.+++ ...++|.+|.+|| |+.++...+
T Consensus 90 a~~~L~~~---~I~~~vyD~v~~ePtv~s~~~alefa---k~~~fDs~vaiGG-GSa~DtaKa 145 (465)
T KOG3857|consen 90 AQDSLEEN---GINVEVYDKVQPEPTVGSVTAALEFA---KKKNFDSFVAIGG-GSAHDTAKA 145 (465)
T ss_pred HHHHHHHc---CCceEEecCccCCCchhhHHHHHHHH---HhcccceEEEEcC-cchhhhHHH
Confidence 34445442 4566666544433 233333 2467899999998 555554443
No 385
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [].; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A ....
Probab=22.65 E-value=5e+02 Score=22.33 Aligned_cols=82 Identities=13% Similarity=0.119 Sum_probs=51.4
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHH--cCCCEEEEEeCCchHHHH
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIK--EGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~--~~~d~ivv~GGDGTl~~v 121 (251)
-+.+++.||+..... ....+..+...+++.......+.........+..++.+++.. .+..+||+++-...+..+
T Consensus 119 ~~w~~v~vv~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~rvvil~~~~~~~~~~ 195 (348)
T PF01094_consen 119 FGWTRVSVVYSDDDY---GNSLADSFQDLLRERGGICVAFISVVISSDSDAEELLKKLKEIKSGARVVILCSSPEDARQF 195 (348)
T ss_dssp TTSSEEEEEEESSHH---HHHHHHHHHHHHHHHTTCEEEEEEEEETTTSHHHHHHHHHHHHTTTTSEEEEESBHHHHHHH
T ss_pred CCCceeeeecccccc---ccccchhhhhhhcccccceecccccccccccchhhhhhhhhhccccceeeeeeccccccccc
Confidence 466788888876543 334456666677664211111212233344556666666555 788899999999999999
Q ss_pred HHHHHhC
Q 025520 122 VNGFFSA 128 (251)
Q Consensus 122 ln~l~~~ 128 (251)
+..+.+.
T Consensus 196 l~~a~~~ 202 (348)
T PF01094_consen 196 LEAAYEL 202 (348)
T ss_dssp HHHHHHT
T ss_pred ccchhhh
Confidence 9988653
No 386
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=22.64 E-value=5.2e+02 Score=22.54 Aligned_cols=38 Identities=13% Similarity=0.106 Sum_probs=24.2
Q ss_pred ccEEEEecC-CccHHHHHHHHHHHc-CCCEEEEEeCCchH
Q 025520 81 CNICESLTS-GPSHAIDITREAIKE-GADAVIAVGGDGTL 118 (251)
Q Consensus 81 ~~~~~~~t~-~~~~a~~~~~~~~~~-~~d~ivv~GGDGTl 118 (251)
+++.+..+. ++..+.+.++++... +.+.|+...++++.
T Consensus 41 i~lv~~D~~~~~~~~~~~~~~li~~~~V~~iig~~~s~~~ 80 (341)
T cd06341 41 IEYVWCDDQGDPASAAACARDLVEDDKVVAVVGGSSGAGG 80 (341)
T ss_pred EEEEEecCCCChhHHHHHHHHHHHhcCceEEEecccccch
Confidence 344444443 456777778887765 77777776666554
No 387
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=22.61 E-value=4.5e+02 Score=21.77 Aligned_cols=104 Identities=8% Similarity=0.008 Sum_probs=57.2
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEE-EEec-CCccHHHHHHHHHHHc---CCCEEEEEeCCchH
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNIC-ESLT-SGPSHAIDITREAIKE---GADAVIAVGGDGTL 118 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~-~~~t-~~~~~a~~~~~~~~~~---~~d~ivv~GGDGTl 118 (251)
...+++.++.++... .....+.+.+...++.+.- ..+.. ...+ .+.+.+.+.++++... .++.|+ +++|.+.
T Consensus 114 ~g~~~i~~i~~~~~~-~~~~~R~~gf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~A 190 (264)
T cd06274 114 APPEEVLFLGGLPEL-SPSRERLAGFRQALADAGL-PVQPDWIYAEGYSPESGYQLMAELLARLGRLPRALF-TTSYTLL 190 (264)
T ss_pred CCCCcEEEEeCCCcc-cchHHHHHHHHHHHHHcCC-CCCcceeecCCCChHHHHHHHHHHHccCCCCCcEEE-EcChHHH
Confidence 456788888766532 2334455556666665421 11111 1222 2345566667776653 245554 6689998
Q ss_pred HHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhhc
Q 025520 119 HEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTF 160 (251)
Q Consensus 119 ~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~l 160 (251)
..+++.+.+.+. .-.-.+.++-.+.- .++..+
T Consensus 191 ~g~~~al~~~g~---------~ip~dv~v~g~d~~-~~~~~~ 222 (264)
T cd06274 191 EGVLRFLRERPG---------LAPSDLRIATFDDH-PLLDFL 222 (264)
T ss_pred HHHHHHHHHcCC---------CCCcceEEEEeCCH-HHHHhc
Confidence 899999976441 11123667666653 355554
No 388
>PRK00441 argR arginine repressor; Provisional
Probab=22.45 E-value=3.9e+02 Score=21.23 Aligned_cols=33 Identities=12% Similarity=0.092 Sum_probs=24.9
Q ss_pred EecCCccHHHHHHHHHHHcC-CCEEEEEeCCchH
Q 025520 86 SLTSGPSHAIDITREAIKEG-ADAVIAVGGDGTL 118 (251)
Q Consensus 86 ~~t~~~~~a~~~~~~~~~~~-~d~ivv~GGDGTl 118 (251)
+.-+.|+.|.-++.-+...+ .+++-.++||-|+
T Consensus 94 vIkT~pG~A~~va~~iD~~~~~eI~GTiAGdDTi 127 (149)
T PRK00441 94 VIKTISGSASAAAEAIDTLNFDGIAGTIAGDNTI 127 (149)
T ss_pred EEEeCCCcHHHHHHHHHhCCCCCeEEEEecCCEE
Confidence 34457888888888777544 5688889999886
No 389
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=22.35 E-value=2.9e+02 Score=22.43 Aligned_cols=29 Identities=21% Similarity=0.134 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCCChhhHHHHHHHHHHhhc
Q 025520 49 LVFVVNPRGASGRTGKEWKKLLPYLRSRL 77 (251)
Q Consensus 49 i~vivNP~sg~g~~~~~~~~i~~~L~~~~ 77 (251)
+.|..+|+..++.+....+.++..+++..
T Consensus 4 LvI~asp~~~~S~s~~l~~~~~~~~~~~~ 32 (199)
T PF02525_consen 4 LVINASPRPEGSFSRALADAFLEGLQEAG 32 (199)
T ss_dssp EEEE--SSTTTSHHHHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCccCHHHHHHHHHHHHHHHcC
Confidence 34444888744556666777778887764
No 390
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=22.34 E-value=4e+02 Score=21.41 Aligned_cols=24 Identities=21% Similarity=0.141 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCc
Q 025520 93 HAIDITREAIKEGADAVIAVGGDG 116 (251)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDG 116 (251)
+..++++.+.+.++|+|+|.=|-.
T Consensus 89 ~~~~i~~~I~~~~pdiv~vglG~P 112 (172)
T PF03808_consen 89 EEEAIINRINASGPDIVFVGLGAP 112 (172)
T ss_pred hHHHHHHHHHHcCCCEEEEECCCC
Confidence 444444455555555554443333
No 391
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=22.06 E-value=3.5e+02 Score=22.55 Aligned_cols=62 Identities=19% Similarity=0.188 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCCh-hHHhhhcCCC
Q 025520 93 HAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTG-SDFARTFGWR 163 (251)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTg-N~fa~~lg~~ 163 (251)
+..+.+.+..+++-+++++..||=.+......++..- ....+++-++|+=|. +..+-.+|++
T Consensus 59 ~~~~~i~~~~~~g~~V~~L~~GDP~~~~~~~~l~~~~---------~~~g~~veviPGiSS~~aa~a~~g~~ 121 (229)
T TIGR01465 59 EIVDIMSDAHREGKLVVRLHTGDPSIYGAIAEQMQLL---------EALGIPYEVVPGVSSFFAAAAALGAE 121 (229)
T ss_pred HHHHHHHHHHHCCCeEEEEeCcCccccccHHHHHHHH---------HHCCCCEEEECChhHHHHHHHHcCCC
Confidence 3344454545567789999999976655544443211 123467888998776 4444557766
No 392
>TIGR02434 CobF precorrin-6A synthase (deacetylating). This model identifies CobF in High GC gram positive, alphaproteobacteria and pseudomonas-related species.
Probab=21.90 E-value=3.1e+02 Score=23.77 Aligned_cols=58 Identities=14% Similarity=0.139 Sum_probs=37.5
Q ss_pred HHHHHHHcCCCEEEEEeCCchHHH----HHHHHHhCCcccccccccccCCceEEEecCCCh-hHHhhhcCCCC
Q 025520 97 ITREAIKEGADAVIAVGGDGTLHE----VVNGFFSAGKLVTNHNRESAHSTALGLIPLGTG-SDFARTFGWRN 164 (251)
Q Consensus 97 ~~~~~~~~~~d~ivv~GGDGTl~~----vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTg-N~fa~~lg~~~ 164 (251)
.+.+....+-+++++..||-++.. ++..+... ....+.+-++|+=|. +..+-.+|+|.
T Consensus 94 ~i~~~~~~g~~Vv~L~~GDP~~yst~~~l~~~l~~~----------~~~~~~vevVPGISS~~aaaA~lg~pl 156 (249)
T TIGR02434 94 AIAEELGDDGTGAFLVWGDPSLYDSTLRILERLRAL----------GGVPFDYEVIPGITSVQALTARHRIPL 156 (249)
T ss_pred HHHHHHhCCCcEEEEeCCCchHhhhHHHHHHHHHHh----------cCCCCCEEEECCHHHHHHHHHHhCCCc
Confidence 334444567789999999988885 44444321 012467888997654 66667778763
No 393
>cd02439 DMB-PRT_CobT Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (DMB-PRT), also called CobT. Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (DMB-PRT/CobT, not to be confused with the CobT subunit of cobaltochelatase, which does not belong to this group) catalyzes the synthesis of alpha-ribazole-5'-phosphate, from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB). This function is essential to the anaerobic biosynthesis pathway of cobalamin (vitamin B12), which is the largest and most complex cofactor in a number of enzyme-catalyzed reactions in bacteria, archaea and eukaryotes. Only eubacteria and archaebacteria can synthesize vitamin B12; multicellular organisms have lost this ability during evolution. DMB-PRT/CobT works sequentially with CobC (a phosphatase) to couple the lower ligand of cobalamin to a ribosyl moiety. DMB is the most common lower ligand of cobamides; other lower ligands include adenine, 5-methoxyben
Probab=21.79 E-value=2.4e+02 Score=25.44 Aligned_cols=45 Identities=27% Similarity=0.373 Sum_probs=32.5
Q ss_pred HHHHHHHcCCCEEEE----EeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhH
Q 025520 97 ITREAIKEGADAVIA----VGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSD 155 (251)
Q Consensus 97 ~~~~~~~~~~d~ivv----~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~ 155 (251)
++++..++++|.|++ +||--|-..++..|.. ..+--+..-|++|+
T Consensus 129 ~~~~~~~~g~dll~~GEmgiGnTTtAaavl~aL~~--------------~~~~~v~g~g~g~~ 177 (315)
T cd02439 129 LAREALDSGYDLLVIGEMGIGNTTTAAAVLAALGG--------------DPAEEVSGRGTGLP 177 (315)
T ss_pred HHHHHHhcCCCEEEEcCccccccHHHHHHHHHHhC--------------CCHHHeecCCCCCC
Confidence 344455678998875 7888899999998863 23445666799888
No 394
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=21.78 E-value=54 Score=29.14 Aligned_cols=21 Identities=29% Similarity=0.290 Sum_probs=14.7
Q ss_pred CEEEEEeCCc-hHHHHHHHHHh
Q 025520 107 DAVIAVGGDG-TLHEVVNGFFS 127 (251)
Q Consensus 107 d~ivv~GGDG-Tl~~vln~l~~ 127 (251)
..||++.||| +++--++.|..
T Consensus 78 ~~VV~i~GDG~~f~ig~~eL~t 99 (279)
T PRK11866 78 LTVIGYGGDGDGYGIGLGHLPH 99 (279)
T ss_pred CcEEEEECChHHHHccHHHHHH
Confidence 4789999999 46555555543
No 395
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=21.77 E-value=2.6e+02 Score=26.76 Aligned_cols=71 Identities=13% Similarity=0.050 Sum_probs=37.7
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhh----cC-CC--ccEEEEecCCccHHH--HHHHHHHHcCCCEEEEEeCCc
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSR----LS-VD--CNICESLTSGPSHAI--DITREAIKEGADAVIAVGGDG 116 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~----~~-~~--~~~~~~~t~~~~~a~--~~~~~~~~~~~d~ivv~GGDG 116 (251)
.+++.|+.-.. .....++.+...|+.. .+ .. -++.++.|-...... +.+.+++.+..|++||+||--
T Consensus 298 l~kvgvvnQTT----m~~~et~~I~~~l~~~~~~k~gp~~~~~~~~vfnTIC~ATqeRQdA~~~L~~~~vDlmiVVGG~N 373 (460)
T PLN02821 298 LVKVGIANQTT----MLKGETEEIGKLLEKTMMQKYGVENVNDHFMSFNTICDATQERQDAMYKLVEEKLDLMLVVGGWN 373 (460)
T ss_pred cccEEEEECCC----CcHHHHHHHHHHHHHhhhhhcCCcccCccccccCCcchhHHHHHHHHHHHhhcCCCEEEEECCCC
Confidence 46666555443 3345566666666542 11 00 122233333322222 224555556799999999987
Q ss_pred hHHH
Q 025520 117 TLHE 120 (251)
Q Consensus 117 Tl~~ 120 (251)
+-|.
T Consensus 374 SSNT 377 (460)
T PLN02821 374 SSNT 377 (460)
T ss_pred CccH
Confidence 7553
No 396
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=21.74 E-value=1.6e+02 Score=22.24 Aligned_cols=48 Identities=10% Similarity=0.032 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCC-CEEEEEeC
Q 025520 67 KKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGA-DAVIAVGG 114 (251)
Q Consensus 67 ~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~-d~ivv~GG 114 (251)
+++.....+.-.+.+-+....+++...+.++++++.+.+. +..+++||
T Consensus 40 e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG 88 (122)
T cd02071 40 EEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGG 88 (122)
T ss_pred HHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEEC
No 397
>PRK03341 arginine repressor; Provisional
Probab=21.68 E-value=4.5e+02 Score=21.46 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=24.3
Q ss_pred EecCCccHHHHHHHHHHHcC-CCEEEEEeCCchH
Q 025520 86 SLTSGPSHAIDITREAIKEG-ADAVIAVGGDGTL 118 (251)
Q Consensus 86 ~~t~~~~~a~~~~~~~~~~~-~d~ivv~GGDGTl 118 (251)
+.-+.|+.|.-++..+...+ .+++-.++||-||
T Consensus 111 VIkT~pG~A~~va~~iD~~~~~eIlGTIAGDDTI 144 (168)
T PRK03341 111 VLRTPPGAAQYLASAIDRAALPEVVGTIAGDDTV 144 (168)
T ss_pred EEEcCCChHHHHHHHHHhCCCCCeEEEeecCCEE
Confidence 44457888988888777544 4678888888886
No 398
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=21.51 E-value=5.6e+02 Score=22.50 Aligned_cols=90 Identities=13% Similarity=0.077 Sum_probs=50.8
Q ss_pred EEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEe-cCCccHHHHHHHHHHHcCCCEEEEEeCCch--HHHHHHHH
Q 025520 49 LVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL-TSGPSHAIDITREAIKEGADAVIAVGGDGT--LHEVVNGF 125 (251)
Q Consensus 49 i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~-t~~~~~a~~~~~~~~~~~~d~ivv~GGDGT--l~~vln~l 125 (251)
=+||++......+....++++...+...- ....+.+.. |....++.++++.+..-+++.+|+-==|+| ...++|.+
T Consensus 156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~-~~~~~LVl~a~~~~~d~~~~~~~f~~~~~~~~I~TKlDet~~~G~~l~~~ 234 (270)
T PRK06731 156 DYILIDTAGKNYRASETVEEMIETMGQVE-PDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIP 234 (270)
T ss_pred CEEEEECCCCCcCCHHHHHHHHHHHhhhC-CCeEEEEEcCccCHHHHHHHHHHhCCCCCCEEEEEeecCCCCccHHHHHH
Confidence 45666655333333334444444443321 111122333 345668888888877677788887655554 55666766
Q ss_pred HhCCcccccccccccCCceEEEecCCC
Q 025520 126 FSAGKLVTNHNRESAHSTALGLIPLGT 152 (251)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~lgilP~GT 152 (251)
.. .+.||.++-.|-
T Consensus 235 ~~-------------~~~Pi~~it~Gq 248 (270)
T PRK06731 235 AV-------------SSAPIVLMTDGQ 248 (270)
T ss_pred HH-------------HCcCEEEEeCCC
Confidence 53 468888887665
No 399
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=21.50 E-value=2.9e+02 Score=19.22 Aligned_cols=45 Identities=18% Similarity=0.103 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCC
Q 025520 66 WKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGD 115 (251)
Q Consensus 66 ~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGD 115 (251)
..++...|+.. ++.+.+. . .........+++...++..++++|-+
T Consensus 18 a~~l~~~L~~~---gi~v~~d-~-~~~~~~k~~~~a~~~g~p~~iiiG~~ 62 (94)
T PF03129_consen 18 AQELANKLRKA---GIRVELD-D-SDKSLGKQIKYADKLGIPFIIIIGEK 62 (94)
T ss_dssp HHHHHHHHHHT---TSEEEEE-S-SSSTHHHHHHHHHHTTESEEEEEEHH
T ss_pred HHHHHHHHHHC---CCEEEEE-C-CCCchhHHHHHHhhcCCeEEEEECch
Confidence 34555666653 3444332 2 45566677777888899999999954
No 400
>PRK08284 precorrin 6A synthase; Provisional
Probab=21.22 E-value=3.8e+02 Score=23.29 Aligned_cols=60 Identities=17% Similarity=0.152 Sum_probs=37.6
Q ss_pred HHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCCh-hHHhhhcCCC
Q 025520 98 TREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTG-SDFARTFGWR 163 (251)
Q Consensus 98 ~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTg-N~fa~~lg~~ 163 (251)
+.+...++-+++++..||-++-.....++..- .......+.+-++|+=|. +..+-.+|++
T Consensus 96 i~~~l~~g~~Vv~l~~GDP~~ys~~~~l~~~l------~~~~~~~i~vevVPGISS~~aaaA~lg~p 156 (253)
T PRK08284 96 IAEELPDGGTGAFLVWGDPSLYDSTLRILERV------RARGRVAFDYEVIPGITSVQALAARHRIP 156 (253)
T ss_pred HHHHHhCCCcEEEEeCCCcchhhHHHHHHHHH------HhhccCCCcEEEECChhHHHHHHHHcCCC
Confidence 33444567889999999987775444443210 000013578889997554 6667778876
No 401
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=21.21 E-value=3.1e+02 Score=20.27 Aligned_cols=52 Identities=15% Similarity=0.090 Sum_probs=33.7
Q ss_pred eEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHH
Q 025520 48 DLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAI 102 (251)
Q Consensus 48 ~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~ 102 (251)
.|.|.+--.||+..-++.-+++...|+.. .+++..+.-....++++..++..
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~---kI~fe~vDIa~~e~~r~~mr~~~ 53 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAK---KIPFEEVDIAMDEEARQWMRENA 53 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHT---T--EEEEETTT-HHHHHHHHHHT
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHc---CCCcEEEeCcCCHHHHHHHHHhc
Confidence 46677777777655566666777788764 57777777777888888888765
No 402
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=21.10 E-value=2.3e+02 Score=22.27 Aligned_cols=51 Identities=16% Similarity=0.044 Sum_probs=32.3
Q ss_pred HHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCch----HHHHHHHHH
Q 025520 71 PYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGT----LHEVVNGFF 126 (251)
Q Consensus 71 ~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGT----l~~vln~l~ 126 (251)
..|+.. +++ ++.........++++.+.+++.|.|.+..==|| +.+++..|.
T Consensus 23 ~~l~~~---Gfe--Vi~LG~~v~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~ 77 (134)
T TIGR01501 23 HAFTNA---GFN--VVNLGVLSPQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCD 77 (134)
T ss_pred HHHHHC---CCE--EEECCCCCCHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHH
Confidence 455552 344 456666666778888888889998888763333 445555554
No 403
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=21.08 E-value=4.4e+02 Score=22.86 Aligned_cols=63 Identities=22% Similarity=0.265 Sum_probs=38.1
Q ss_pred EEEEcCCCCCCChh--hHHHHHHHHHHhhcCCCccEEE-EecCCccHHHHHHHHHHHcCCCEEEEE
Q 025520 50 VFVVNPRGASGRTG--KEWKKLLPYLRSRLSVDCNICE-SLTSGPSHAIDITREAIKEGADAVIAV 112 (251)
Q Consensus 50 ~vivNP~sg~g~~~--~~~~~i~~~L~~~~~~~~~~~~-~~t~~~~~a~~~~~~~~~~~~d~ivv~ 112 (251)
.|++|-.+|-.... +.+.++.+...+.......+.. .-..+..++.++++.+...+.|.|++.
T Consensus 37 gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~ 102 (284)
T cd00950 37 GLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVV 102 (284)
T ss_pred EEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEc
Confidence 46777777654443 3344444444444332333333 233456788899999888899988877
No 404
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=21.02 E-value=1.6e+02 Score=27.33 Aligned_cols=110 Identities=17% Similarity=0.119 Sum_probs=55.4
Q ss_pred CCCCCCCccc--CCCC-CCcccCCCCCCCCC--CCCCCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEE
Q 025520 12 APPMAKPSVF--RAEH-PMALDLSPNPISHG--AASSSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICES 86 (251)
Q Consensus 12 ~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~--~~~~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~ 86 (251)
++-|.+|-.. .|.+ -.+.|++|..-... -+....+.+=+|+.|-... ++.+.+.+++...-.....+.-+
T Consensus 142 avSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~-----~R~~~L~~q~~~l~~~~~~v~~~ 216 (375)
T KOG2198|consen 142 AVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDP-----KRLNMLVHQLKRLPSPNLLVTNH 216 (375)
T ss_pred hhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCH-----HHHHHHHHHHhccCCcceeeecc
Confidence 4455555444 3333 67778887655400 0112222256888887653 34455666774322111111111
Q ss_pred -ecCCccHHHHHHHHHHHcCCCEEEE---EeCCchHHHHHHHHH
Q 025520 87 -LTSGPSHAIDITREAIKEGADAVIA---VGGDGTLHEVVNGFF 126 (251)
Q Consensus 87 -~t~~~~~a~~~~~~~~~~~~d~ivv---~GGDGTl~~vln~l~ 126 (251)
.+..+.....-..+.....||.|+| |-||||+..-.|-..
T Consensus 217 ~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~ 260 (375)
T KOG2198|consen 217 DASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWK 260 (375)
T ss_pred cceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhh
Confidence 1112221110001334567998877 899999998887554
No 405
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.95 E-value=4.9e+02 Score=21.61 Aligned_cols=80 Identities=14% Similarity=0.241 Sum_probs=41.9
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEE--ecC-CccHHHHHHHHHHHcCC--CEEEEEeCCchHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICES--LTS-GPSHAIDITREAIKEGA--DAVIAVGGDGTLH 119 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~--~t~-~~~~a~~~~~~~~~~~~--d~ivv~GGDGTl~ 119 (251)
..+++.+|..+.. ......+.+.+...++.. +.++... ... +.+.+.+.++++..... +.| ++.+|....
T Consensus 124 g~~~i~~i~~~~~-~~~~~~r~~gf~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~a~ 198 (277)
T cd06319 124 ADGKVGMVAIPQK-RKNGQKRTKGFKEAMKEA---GCDLAGIRQQKDFSYQETFDYTNDLLTANPDIRAI-WLQGSDRYQ 198 (277)
T ss_pred CCCcEEEEeccCC-CccHHHHHHHHHHHHHhc---CCceEeeccCCCCCHHHHHHHHHHHHHhCCCCCEE-EECCCccch
Confidence 3567877764432 223344555566666654 2222211 111 23455666667665443 444 445666666
Q ss_pred HHHHHHHhCC
Q 025520 120 EVVNGFFSAG 129 (251)
Q Consensus 120 ~vln~l~~~~ 129 (251)
.++..|...+
T Consensus 199 g~~~al~~~g 208 (277)
T cd06319 199 GALDAIATAG 208 (277)
T ss_pred HHHHHHHHcC
Confidence 8888886543
No 406
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=20.90 E-value=4.8e+02 Score=21.44 Aligned_cols=83 Identities=11% Similarity=0.065 Sum_probs=43.2
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHc--CCCEEEEEeCCchHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKE--GADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~--~~d~ivv~GGDGTl~~vl 122 (251)
..+++.+|..+.........+.+.+...++...- ..............+.+.+.++... ..|.|+ +.+|.+...++
T Consensus 115 g~~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~ 192 (266)
T cd06282 115 GHRRIAMLAGRLAASDRARQRYAGYRAAMRAAGL-APLPPVEIPFNTAALPSALLALLTAHPAPTAIF-CSNDLLALAVI 192 (266)
T ss_pred CcccEEEeccccccCchHHHHHHHHHHHHHHcCC-CCCccccCCCcHHHHHHHHHHHhcCCCCCCEEE-ECCcHHHHHHH
Confidence 4578888865432222233444555666665421 1111111122233455666665543 345554 46788888899
Q ss_pred HHHHhCC
Q 025520 123 NGFFSAG 129 (251)
Q Consensus 123 n~l~~~~ 129 (251)
+.+.+.+
T Consensus 193 ~al~~~g 199 (266)
T cd06282 193 RALRRLG 199 (266)
T ss_pred HHHHHcC
Confidence 9887654
No 407
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=20.89 E-value=1.5e+02 Score=23.67 Aligned_cols=67 Identities=12% Similarity=0.147 Sum_probs=39.1
Q ss_pred CeEEEEEcCCCC---CCCh----hhHHHHHHHHHHhhcC-CCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeC
Q 025520 47 RDLVFVVNPRGA---SGRT----GKEWKKLLPYLRSRLS-VDCNICESLTSGPSHAIDITREAIKEGADAVIAVGG 114 (251)
Q Consensus 47 ~~i~vivNP~sg---~g~~----~~~~~~i~~~L~~~~~-~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GG 114 (251)
++++||-=|.-+ +... ...++++...+++... .++++..+.+.+.++..+..+++..+ +|.||+-=|
T Consensus 1 m~IlvinGPNLn~LG~Rep~iYG~~tl~~i~~~~~~~a~~~g~~v~~~QSN~EGelid~I~~a~~~-~dgiIINpg 75 (140)
T PF01220_consen 1 MKILVINGPNLNLLGKREPEIYGTTTLEDIEQKCKETAAELGVEVEFFQSNHEGELIDWIHEARDD-VDGIIINPG 75 (140)
T ss_dssp EEEEEEE-TTGGGTTTSSHHHHTSSHHHHHHHHHHHHHHHTTEEEEEEE-SSHHHHHHHHHHHTCT-TSEEEEE-G
T ss_pred CEEEEEcCCCcccccCCCCCcCCcCCHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHHHhh-CCEEEEccc
Confidence 356777666532 1111 2335556666655432 23677778999999998888887654 787776544
No 408
>PRK05569 flavodoxin; Provisional
Probab=20.89 E-value=3.8e+02 Score=20.29 Aligned_cols=68 Identities=9% Similarity=0.086 Sum_probs=37.2
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeC---Cc-----h
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGG---DG-----T 117 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GG---DG-----T 117 (251)
|++++||+=. ..|++.+..+.+...+.+. +.++.++...... .. ++ .++|.|+++-- .| .
T Consensus 1 m~ki~iiY~S--~tGnT~~iA~~i~~~~~~~---g~~v~~~~~~~~~-~~----~~--~~~d~iilgsPty~~~~~~~~~ 68 (141)
T PRK05569 1 MKKVSIIYWS--CGGNVEVLANTIADGAKEA---GAEVTIKHVADAK-VE----DV--LEADAVAFGSPSMDNNNIEQEE 68 (141)
T ss_pred CCeEEEEEEC--CCCHHHHHHHHHHHHHHhC---CCeEEEEECCcCC-HH----HH--hhCCEEEEECCCcCCCcCChHH
Confidence 3567777743 4567777777777767653 2344444333221 11 22 35787777652 33 2
Q ss_pred HHHHHHHH
Q 025520 118 LHEVVNGF 125 (251)
Q Consensus 118 l~~vln~l 125 (251)
+..+++.+
T Consensus 69 ~~~~~~~l 76 (141)
T PRK05569 69 MAPFLDQF 76 (141)
T ss_pred HHHHHHHh
Confidence 56666655
No 409
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=20.87 E-value=1.3e+02 Score=25.98 Aligned_cols=12 Identities=25% Similarity=0.581 Sum_probs=6.3
Q ss_pred CCCEEEEEeCCc
Q 025520 105 GADAVIAVGGDG 116 (251)
Q Consensus 105 ~~d~ivv~GGDG 116 (251)
+..++++-++.+
T Consensus 110 ~~~v~~vNS~~~ 121 (239)
T PF10593_consen 110 GIEVVVVNSGSS 121 (239)
T ss_pred CceEEEEeCCCc
Confidence 455666664433
No 410
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=20.86 E-value=88 Score=28.02 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=15.5
Q ss_pred CEEEEEeCCc-hHHHHHHHHHh
Q 025520 107 DAVIAVGGDG-TLHEVVNGFFS 127 (251)
Q Consensus 107 d~ivv~GGDG-Tl~~vln~l~~ 127 (251)
-.|++.|||| +..--.+.|..
T Consensus 89 l~Viv~gGDG~~~dIG~~~l~h 110 (294)
T COG1013 89 LSVIVIGGDGDAYDIGGNHLIH 110 (294)
T ss_pred CeEEEEecchhHhhhhhHHHHH
Confidence 3799999999 76666666553
No 411
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=20.83 E-value=1e+02 Score=26.50 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=14.3
Q ss_pred CCEEEEEeCCchH-HHHHHHHH
Q 025520 106 ADAVIAVGGDGTL-HEVVNGFF 126 (251)
Q Consensus 106 ~d~ivv~GGDGTl-~~vln~l~ 126 (251)
-..||++.|||++ .--++.|.
T Consensus 80 ~r~VV~i~GDG~~~~m~~~eL~ 101 (235)
T cd03376 80 DITVVAFAGDGGTADIGFQALS 101 (235)
T ss_pred CCeEEEEEcCchHHhhHHHHHH
Confidence 3579999999994 44444443
No 412
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=20.83 E-value=4.8e+02 Score=21.48 Aligned_cols=83 Identities=14% Similarity=0.145 Sum_probs=45.1
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccE-EEEe-cCCccHHHHHHHHHHHcC-CCEEEEEeCCchHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNI-CESL-TSGPSHAIDITREAIKEG-ADAVIAVGGDGTLHEV 121 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~-~~~~-t~~~~~a~~~~~~~~~~~-~d~ivv~GGDGTl~~v 121 (251)
..+++.+|..+.........+++-+...++.+.. .... .+.. ..+...+.+.++++.... ++.|+ +.+|.....+
T Consensus 115 g~~~i~~l~~~~~~~~~~~~r~~gf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ai~-~~~d~~a~~~ 192 (268)
T cd06298 115 GHKKIAFISGPLEDSINGDERLAGYKEALSEANI-EFDESLIFEGDYTYESGYELAEELLEDGKPTAAF-VTDDELAIGI 192 (268)
T ss_pred CCceEEEEeCCcccccchhHHHHHHHHHHHHcCC-CCCHHHeEeCCCChhHHHHHHHHHhcCCCCCEEE-EcCcHHHHHH
Confidence 4578888875433112233444555566655321 1111 1112 223445556666665443 56665 5789888889
Q ss_pred HHHHHhCC
Q 025520 122 VNGFFSAG 129 (251)
Q Consensus 122 ln~l~~~~ 129 (251)
+..|.+.+
T Consensus 193 ~~~l~~~g 200 (268)
T cd06298 193 LNAAQDAG 200 (268)
T ss_pred HHHHHHcC
Confidence 99887543
No 413
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=20.81 E-value=82 Score=24.79 Aligned_cols=18 Identities=17% Similarity=0.143 Sum_probs=13.3
Q ss_pred CCceEEEecCCChhHHhhh
Q 025520 141 HSTALGLIPLGTGSDFART 159 (251)
Q Consensus 141 ~~~~lgilP~GTgN~fa~~ 159 (251)
.++.+.+|=+|| ||+.+.
T Consensus 49 ~~p~~vvi~~G~-ND~~~~ 66 (171)
T cd04502 49 YQPRRVVLYAGD-NDLASG 66 (171)
T ss_pred CCCCEEEEEEec-CcccCC
Confidence 356788888888 887543
No 414
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=20.79 E-value=5e+02 Score=21.60 Aligned_cols=80 Identities=14% Similarity=0.102 Sum_probs=43.0
Q ss_pred CCCeEEEEE-cCCCCCCChhhHHHHHHHHHHhhcCCCccEEE-EecC-CccHHHHHHHHHHHcCCC-EEEEEeCCchHHH
Q 025520 45 RRRDLVFVV-NPRGASGRTGKEWKKLLPYLRSRLSVDCNICE-SLTS-GPSHAIDITREAIKEGAD-AVIAVGGDGTLHE 120 (251)
Q Consensus 45 ~~~~i~viv-NP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~-~~t~-~~~~a~~~~~~~~~~~~d-~ivv~GGDGTl~~ 120 (251)
..+++.+|. ++.. .....+.+-+...+.+.. ..++.. +.+. +..++.+.++++.....+ ..+++.+|. ...
T Consensus 124 g~~~i~~i~~~~~~--~~~~~R~~g~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~d~-A~g 198 (272)
T cd06300 124 GKGNVLVVRGLAGH--PVDEDRYAGAKEVLKEYP--GIKIVGEVYGDWDQAVAQKAVADFLASNPDVDGIWTQGGD-AVG 198 (272)
T ss_pred CCceEEEEECCCCC--cchHHHHHHHHHHHHHCC--CcEEEeecCCCCCHHHHHHHHHHHHHhCCCcCEEEecCCC-cHH
Confidence 457788776 3332 222334444555665532 133221 2222 234566777777655432 456666777 888
Q ss_pred HHHHHHhCC
Q 025520 121 VVNGFFSAG 129 (251)
Q Consensus 121 vln~l~~~~ 129 (251)
++++|.+.+
T Consensus 199 ~~~al~~~g 207 (272)
T cd06300 199 AVQAFEQAG 207 (272)
T ss_pred HHHHHHHcC
Confidence 999887543
No 415
>PRK09492 treR trehalose repressor; Provisional
Probab=20.77 E-value=5.4e+02 Score=22.06 Aligned_cols=81 Identities=7% Similarity=0.137 Sum_probs=0.0
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecC-CccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTS-GPSHAIDITREAIKEGADAVIAVGGDGTLHEVVN 123 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln 123 (251)
..+++.+|-.+.+.......+.+-+...++.+ +.++...... +.+.+.+.++++...+++.|++.. |-.-..+++
T Consensus 174 G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~---g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ai~~~~-D~~A~g~~~ 249 (315)
T PRK09492 174 GHRHISYLGVDHSDVTTGKRRHQAYLAFCKQH---KLTPVAALGGLSMQSGYELVAKVLTPETTALVCAT-DTLALGASK 249 (315)
T ss_pred CCCeEEEEcCCcccchhHHHHHHHHHHHHHHc---CCCceeecCCCCchHHHHHHHHHhhcCCCEEEEcC-cHHHHHHHH
Q ss_pred HHHhCC
Q 025520 124 GFFSAG 129 (251)
Q Consensus 124 ~l~~~~ 129 (251)
.|.+.+
T Consensus 250 al~~~g 255 (315)
T PRK09492 250 YLQEQG 255 (315)
T ss_pred HHHHcC
No 416
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=20.70 E-value=1.3e+02 Score=19.32 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=15.6
Q ss_pred HcCCCEEEEEeCCchHHHH
Q 025520 103 KEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 103 ~~~~d~ivv~GGDGTl~~v 121 (251)
..++|.+++.||..+....
T Consensus 44 ~~~~~~lii~g~~~~~~~~ 62 (92)
T cd03128 44 LDDYDGLILPGGPGTPDDL 62 (92)
T ss_pred cccCCEEEECCCCcchhhh
Confidence 4578999999999998554
No 417
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=20.68 E-value=5.1e+02 Score=23.93 Aligned_cols=75 Identities=19% Similarity=0.272 Sum_probs=40.5
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHH---HHH-HcCCCEEEEEeC----C
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITR---EAI-KEGADAVIAVGG----D 115 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~---~~~-~~~~d~ivv~GG----D 115 (251)
++.++++|++---|=+ ...++.++...|+. .++.++-.-.|..-.+... +++ +++.|.|+++|| |
T Consensus 27 ~~~~kVLi~YGGGSIK--rnGvydqV~~~Lkg-----~~~~E~~GVEPNP~~~Tv~kaV~i~kee~idflLAVGGGSViD 99 (384)
T COG1979 27 PKDAKVLIVYGGGSIK--KNGVYDQVVEALKG-----IEVIEFGGVEPNPRLETLMKAVEICKEENIDFLLAVGGGSVID 99 (384)
T ss_pred cccCeEEEEecCcccc--ccchHHHHHHHhcC-----ceEEEecCCCCCchHHHHHHHHHHHHHcCceEEEEecCcchhh
Confidence 4458899998765533 23567777777763 3333322222221122221 222 468899999999 5
Q ss_pred chHHHHHHHH
Q 025520 116 GTLHEVVNGF 125 (251)
Q Consensus 116 GTl~~vln~l 125 (251)
||=-=++...
T Consensus 100 ~tK~IAa~a~ 109 (384)
T COG1979 100 GTKFIAAAAK 109 (384)
T ss_pred hHHHHHhhcc
Confidence 5544444333
No 418
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=20.62 E-value=2.6e+02 Score=24.27 Aligned_cols=12 Identities=25% Similarity=0.177 Sum_probs=5.4
Q ss_pred CchHHHHHHHHH
Q 025520 115 DGTLHEVVNGFF 126 (251)
Q Consensus 115 DGTl~~vln~l~ 126 (251)
|-+=.+++...+
T Consensus 81 DT~~~~vi~~al 92 (257)
T TIGR01496 81 DTYRAEVARAAL 92 (257)
T ss_pred eCCCHHHHHHHH
Confidence 444444444443
No 419
>smart00537 DCX Domain in the Doublecortin (DCX) gene product. Tandemly-repeated domain in doublin, the Doublecortin gene product. Proposed to bind tubulin. Doublecortin (DCX) is mutated in human X-linked neuronal migration defects.
Probab=20.60 E-value=2.4e+02 Score=20.25 Aligned_cols=61 Identities=20% Similarity=0.272 Sum_probs=32.0
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHh--hcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCC
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRS--RLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGD 115 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~--~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGD 115 (251)
+.+-+++|++. -+.|+.++..|.+ .+....-+.-+.|..- +-..-..++. + -+..|++|++
T Consensus 19 ~g~~~~v~~~~-----~~s~d~lL~~lt~~v~l~~~~~Vr~lyt~~G-~~v~~l~~l~-~-g~~yVa~g~e 81 (89)
T smart00537 19 KGVRLVVNRKR-----FKSFEALLQDLTEVVKLDLPHGVRKLYTLDG-KKVTSLDELE-D-GGSYVASGTE 81 (89)
T ss_pred CCEEEEEChhh-----cCCHHHHHHHHhhhcccCCCCCeeEEEcCCC-CEECCHHHhC-c-CCEEEEEcCC
Confidence 44555666543 2346667777766 3332212554555553 3233334443 2 4788888876
No 420
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=20.45 E-value=5.8e+02 Score=22.26 Aligned_cols=78 Identities=15% Similarity=0.103 Sum_probs=45.7
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEE--EEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNIC--ESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~--~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
..+++.++.+..+- + +...+.+...+++. +.++. ........+....+.++...++|.|++++-..-...++
T Consensus 131 g~~~v~i~~~~~~~-g--~~~~~~~~~~~~~~---G~~v~~~~~~~~~~~d~~~~v~~l~~~~pd~v~~~~~~~~~~~~~ 204 (333)
T cd06358 131 GARRWYLIGNDYVW-P--RGSLAAAKRYIAEL---GGEVVGEEYVPLGTTDFTSVLERIAASGADAVLSTLVGQDAVAFN 204 (333)
T ss_pred CCCeEEEEeccchh-h--HHHHHHHHHHHHHc---CCEEeeeeeecCChHHHHHHHHHHHHcCCCEEEEeCCCCchHHHH
Confidence 46888888766542 2 22333344455553 23332 12233445677777788888999988866554445677
Q ss_pred HHHHhC
Q 025520 123 NGFFSA 128 (251)
Q Consensus 123 n~l~~~ 128 (251)
..+.+.
T Consensus 205 ~~~~~~ 210 (333)
T cd06358 205 RQFAAA 210 (333)
T ss_pred HHHHHc
Confidence 777643
No 421
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.43 E-value=4.9e+02 Score=21.44 Aligned_cols=57 Identities=7% Similarity=0.128 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHH-HcCCCEEEEEeCCchHHHHHHHHH
Q 025520 66 WKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAI-KEGADAVIAVGGDGTLHEVVNGFF 126 (251)
Q Consensus 66 ~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~-~~~~d~ivv~GGDGTl~~vln~l~ 126 (251)
++.+...++.. ++++.+..+.+..+..+.+.++. ..+.|.|++...+.. ...+..+.
T Consensus 23 ~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~~~~-~~~~~~~~ 80 (270)
T cd06294 23 LRGISAVANEN---GYDISLATGKNEEELLEEVKKMIQQKRVDGFILLYSRED-DPIIDYLK 80 (270)
T ss_pred HHHHHHHHHHC---CCEEEEecCCCcHHHHHHHHHHHHHcCcCEEEEecCcCC-cHHHHHHH
Confidence 33444444442 35554433333333333444443 446899998875433 23445443
No 422
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=20.24 E-value=1.9e+02 Score=23.93 Aligned_cols=88 Identities=14% Similarity=0.077 Sum_probs=43.4
Q ss_pred HHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeC-CchHHH---HHHHHHhCCcccccccccccCCceEE
Q 025520 71 PYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGG-DGTLHE---VVNGFFSAGKLVTNHNRESAHSTALG 146 (251)
Q Consensus 71 ~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GG-DGTl~~---vln~l~~~~~~~~~~~~~~~~~~~lg 146 (251)
..|+.. ++++ +.-...-...++++.+.+.++|.|.+..= ..++.. +++.|-+. ....+++|.
T Consensus 104 ~~l~~~---G~~v--i~lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~---------~~~~~~~i~ 169 (201)
T cd02070 104 TMLEAN---GFEV--IDLGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEA---------GLRDKVKVM 169 (201)
T ss_pred HHHHHC---CCEE--EECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHC---------CCCcCCeEE
Confidence 345542 4554 33333334566777777788998887763 333333 33333221 111133332
Q ss_pred EecCCChhHHhhhcCCC---CCHHHHHHH
Q 025520 147 LIPLGTGSDFARTFGWR---NDPYEAVER 172 (251)
Q Consensus 147 ilP~GTgN~fa~~lg~~---~~~~~al~~ 172 (251)
+=-..-.-++++.+|.. .|..++++.
T Consensus 170 vGG~~~~~~~~~~~GaD~~~~da~~av~~ 198 (201)
T cd02070 170 VGGAPVNQEFADEIGADGYAEDAAEAVAI 198 (201)
T ss_pred EECCcCCHHHHHHcCCcEEECCHHHHHHH
Confidence 22222224688888864 355555543
Done!