Query 025520
Match_columns 251
No_of_seqs 137 out of 1234
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 11:59:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025520.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025520hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s40_A Diacylglycerol kinase; 100.0 2E-39 6.8E-44 288.7 17.8 186 43-248 5-192 (304)
2 2qv7_A Diacylglycerol kinase D 100.0 2.8E-36 9.7E-41 271.8 15.1 185 46-249 24-210 (337)
3 2bon_A Lipid kinase; DAG kinas 100.0 1E-35 3.6E-40 267.7 15.7 185 45-249 28-215 (332)
4 2an1_A Putative kinase; struct 99.5 2.6E-15 8.7E-20 132.2 2.9 124 46-201 5-133 (292)
5 1yt5_A Inorganic polyphosphate 99.3 8.7E-13 3E-17 114.3 3.0 107 48-200 2-109 (258)
6 2i2c_A Probable inorganic poly 99.2 6.8E-12 2.3E-16 109.4 5.0 96 47-179 1-96 (272)
7 1u0t_A Inorganic polyphosphate 99.2 3E-11 1E-15 107.1 7.6 114 46-179 4-134 (307)
8 3afo_A NADH kinase POS5; alpha 98.5 9.8E-08 3.3E-12 87.0 5.5 113 44-178 39-173 (388)
9 1z0s_A Probable inorganic poly 97.7 8.6E-05 3E-09 64.6 7.8 93 47-175 30-122 (278)
10 3pfn_A NAD kinase; structural 97.3 0.00062 2.1E-08 61.3 8.5 114 43-178 35-166 (365)
11 3hl0_A Maleylacetate reductase 91.1 0.94 3.2E-05 40.2 9.0 82 46-150 34-119 (353)
12 1o2d_A Alcohol dehydrogenase, 90.9 1.1 3.7E-05 40.0 9.2 75 47-127 41-119 (371)
13 3uhj_A Probable glycerol dehyd 90.8 0.82 2.8E-05 41.1 8.4 85 47-150 53-138 (387)
14 3jzd_A Iron-containing alcohol 90.5 1.2 3.9E-05 39.7 9.0 82 46-150 36-121 (358)
15 1vlj_A NADH-dependent butanol 89.5 1.3 4.5E-05 39.9 8.7 98 46-150 43-151 (407)
16 1jq5_A Glycerol dehydrogenase; 89.2 1.4 4.7E-05 39.1 8.4 84 47-150 32-118 (370)
17 3bfj_A 1,3-propanediol oxidore 89.0 3.2 0.00011 37.0 10.7 100 46-150 33-142 (387)
18 3okf_A 3-dehydroquinate syntha 88.9 3.8 0.00013 36.9 11.2 88 45-150 61-157 (390)
19 1pfk_A Phosphofructokinase; tr 88.7 0.81 2.8E-05 40.2 6.4 52 93-158 82-133 (320)
20 1sg6_A Pentafunctional AROM po 88.2 0.98 3.4E-05 40.6 6.8 97 46-157 36-148 (393)
21 3ox4_A Alcohol dehydrogenase 2 88.2 1.1 3.9E-05 40.0 7.2 74 46-126 31-108 (383)
22 3ce9_A Glycerol dehydrogenase; 87.9 1.3 4.5E-05 39.0 7.4 85 47-152 35-122 (354)
23 1oj7_A Hypothetical oxidoreduc 87.8 2 7E-05 38.6 8.7 73 47-127 51-127 (408)
24 4grd_A N5-CAIR mutase, phospho 87.5 6.4 0.00022 31.3 10.3 79 43-126 9-89 (173)
25 2hig_A 6-phospho-1-fructokinas 87.5 1.2 4.1E-05 41.4 7.0 57 93-157 177-233 (487)
26 2gru_A 2-deoxy-scyllo-inosose 87.5 4.1 0.00014 36.1 10.4 88 46-150 34-128 (368)
27 1zxx_A 6-phosphofructokinase; 86.5 0.61 2.1E-05 41.0 4.2 53 92-158 80-132 (319)
28 3lp6_A Phosphoribosylaminoimid 85.9 7.8 0.00027 30.8 10.0 112 46-187 7-120 (174)
29 4a3s_A 6-phosphofructokinase; 83.8 1.1 3.9E-05 39.2 4.7 51 93-157 81-131 (319)
30 3clh_A 3-dehydroquinate syntha 83.7 1.3 4.6E-05 38.9 5.2 87 46-150 26-119 (343)
31 3qbe_A 3-dehydroquinate syntha 83.5 8.6 0.00029 34.2 10.5 85 47-150 44-137 (368)
32 1rrm_A Lactaldehyde reductase; 83.5 2.4 8.3E-05 37.7 6.9 75 46-127 31-109 (386)
33 1ta9_A Glycerol dehydrogenase; 82.5 3.1 0.00011 38.1 7.3 83 47-150 92-177 (450)
34 2f48_A Diphosphate--fructose-6 81.6 1.3 4.5E-05 41.8 4.5 58 93-158 154-211 (555)
35 3jy6_A Transcriptional regulat 80.0 18 0.00061 29.5 10.8 77 43-126 4-82 (276)
36 3ors_A N5-carboxyaminoimidazol 79.8 14 0.00047 29.1 9.2 74 48-126 5-80 (163)
37 1xah_A Sadhqs, 3-dehydroquinat 79.5 4 0.00014 35.9 6.8 87 47-151 32-125 (354)
38 3hno_A Pyrophosphate-dependent 79.4 3.4 0.00012 37.6 6.3 59 91-157 90-148 (419)
39 3o8l_A 6-phosphofructokinase, 79.0 4.5 0.00015 39.6 7.4 63 94-157 98-170 (762)
40 2lnd_A De novo designed protei 78.4 11 0.00036 26.2 7.1 52 44-103 49-100 (112)
41 3rpe_A MDAB, modulator of drug 77.7 7.1 0.00024 32.1 7.3 67 41-112 20-90 (218)
42 3oow_A Phosphoribosylaminoimid 77.3 17 0.00058 28.6 9.0 86 48-153 7-94 (166)
43 1ujn_A Dehydroquinate synthase 76.0 8.9 0.0003 33.6 8.0 84 46-150 28-118 (348)
44 1xmp_A PURE, phosphoribosylami 75.0 13 0.00044 29.5 7.7 74 64-153 25-100 (170)
45 1u11_A PURE (N5-carboxyaminoim 74.8 24 0.00082 28.2 9.3 87 47-153 22-110 (182)
46 3l49_A ABC sugar (ribose) tran 74.1 31 0.001 28.1 10.6 81 43-127 2-84 (291)
47 2fep_A Catabolite control prot 73.5 24 0.00083 29.0 9.8 78 43-126 13-92 (289)
48 2q5c_A NTRC family transcripti 73.4 18 0.0006 29.0 8.5 65 47-125 95-159 (196)
49 3l6u_A ABC-type sugar transpor 72.7 24 0.00081 28.9 9.5 80 43-127 5-87 (293)
50 3opy_A 6-phosphofructo-1-kinas 72.7 6.1 0.00021 39.7 6.5 58 93-157 676-733 (989)
51 3opy_A 6-phosphofructo-1-kinas 72.5 2.5 8.6E-05 42.4 3.7 61 95-157 294-365 (989)
52 2rgy_A Transcriptional regulat 72.3 20 0.00067 29.5 9.0 77 44-126 6-87 (290)
53 1o4v_A Phosphoribosylaminoimid 72.0 17 0.00057 29.1 7.8 99 64-188 27-127 (183)
54 3trh_A Phosphoribosylaminoimid 71.8 20 0.00068 28.3 8.1 74 48-126 8-83 (169)
55 3o8o_B 6-phosphofructokinase s 71.7 7.6 0.00026 38.0 6.8 63 95-158 88-160 (766)
56 3o8l_A 6-phosphofructokinase, 71.5 8.7 0.0003 37.6 7.2 60 92-158 476-535 (762)
57 3opy_B 6-phosphofructo-1-kinas 71.5 2.4 8.3E-05 42.4 3.4 61 96-158 267-338 (941)
58 3brq_A HTH-type transcriptiona 71.5 39 0.0013 27.4 11.1 78 44-126 17-97 (296)
59 3iv7_A Alcohol dehydrogenase I 71.0 5.5 0.00019 35.3 5.4 46 92-150 75-120 (364)
60 3o8o_A 6-phosphofructokinase s 70.7 3.6 0.00012 40.4 4.4 63 95-158 89-161 (787)
61 2fqx_A Membrane lipoprotein TM 70.7 25 0.00085 29.8 9.5 67 46-115 4-72 (318)
62 2fvy_A D-galactose-binding per 70.3 34 0.0012 28.0 10.1 75 47-126 3-81 (309)
63 3kuu_A Phosphoribosylaminoimid 70.2 20 0.00067 28.5 7.8 74 48-126 14-89 (174)
64 3opy_B 6-phosphofructo-1-kinas 69.9 8 0.00027 38.7 6.6 59 93-158 650-708 (941)
65 3egc_A Putative ribose operon 69.8 20 0.00067 29.4 8.4 77 43-125 5-83 (291)
66 3o8o_A 6-phosphofructokinase s 69.5 9.8 0.00033 37.4 7.1 58 93-157 471-528 (787)
67 4b4k_A N5-carboxyaminoimidazol 69.4 22 0.00076 28.3 8.0 80 42-126 17-99 (181)
68 2iks_A DNA-binding transcripti 68.9 23 0.00078 29.1 8.6 77 44-125 18-96 (293)
69 3k9c_A Transcriptional regulat 68.7 20 0.00067 29.5 8.2 77 43-125 9-85 (289)
70 3tb6_A Arabinose metabolism tr 68.0 47 0.0016 26.9 10.6 79 45-127 14-97 (298)
71 3gbv_A Putative LACI-family tr 67.9 26 0.00089 28.6 8.8 82 43-126 5-91 (304)
72 3h75_A Periplasmic sugar-bindi 67.7 55 0.0019 27.6 11.6 76 47-126 4-83 (350)
73 3lop_A Substrate binding perip 67.5 48 0.0016 28.0 10.7 81 44-128 139-219 (364)
74 3g1w_A Sugar ABC transporter; 67.0 36 0.0012 28.0 9.5 79 45-127 3-84 (305)
75 3s99_A Basic membrane lipoprot 65.6 36 0.0012 29.8 9.5 82 41-126 21-105 (356)
76 3lkb_A Probable branched-chain 64.9 34 0.0012 29.4 9.2 78 45-128 142-221 (392)
77 3lft_A Uncharacterized protein 64.3 36 0.0012 28.1 9.0 76 45-127 132-207 (295)
78 3rf7_A Iron-containing alcohol 64.1 25 0.00084 31.2 8.2 70 47-127 54-130 (375)
79 1dbq_A Purine repressor; trans 63.8 57 0.0019 26.4 10.6 76 44-125 5-82 (289)
80 4eyg_A Twin-arginine transloca 63.7 57 0.0019 27.4 10.4 79 45-129 138-218 (368)
81 1tjy_A Sugar transport protein 63.3 33 0.0011 28.7 8.7 75 47-126 4-82 (316)
82 3o8o_B 6-phosphofructokinase s 63.2 8.6 0.0003 37.6 5.3 58 93-157 472-529 (766)
83 3d8u_A PURR transcriptional re 62.9 26 0.00087 28.3 7.7 76 45-126 2-79 (275)
84 3c3k_A Alanine racemase; struc 62.8 48 0.0016 27.0 9.4 76 44-125 6-83 (285)
85 3o74_A Fructose transport syst 62.1 29 0.001 27.8 7.9 77 46-127 2-80 (272)
86 2rjo_A Twin-arginine transloca 62.0 42 0.0014 28.1 9.1 76 43-126 2-85 (332)
87 3brs_A Periplasmic binding pro 62.0 26 0.0009 28.5 7.6 79 44-125 3-86 (289)
88 2x7x_A Sensor protein; transfe 61.8 49 0.0017 27.6 9.5 77 44-126 4-84 (325)
89 3clk_A Transcription regulator 61.6 27 0.00092 28.6 7.6 77 44-126 6-85 (290)
90 3ipc_A ABC transporter, substr 61.5 45 0.0015 28.0 9.3 80 45-128 137-216 (356)
91 3rg8_A Phosphoribosylaminoimid 61.4 35 0.0012 26.6 7.6 62 64-126 16-80 (159)
92 2fn9_A Ribose ABC transporter, 61.4 46 0.0016 27.0 9.1 75 47-126 3-80 (290)
93 2pbq_A Molybdenum cofactor bio 60.8 20 0.00068 28.2 6.3 31 86-116 48-79 (178)
94 3qk7_A Transcriptional regulat 60.8 30 0.001 28.4 7.9 82 43-126 3-85 (294)
95 3pzy_A MOG; ssgcid, seattle st 60.1 17 0.00058 28.3 5.7 55 69-125 32-91 (164)
96 8abp_A L-arabinose-binding pro 59.6 70 0.0024 26.0 10.6 72 47-126 3-79 (306)
97 2fp3_A Caspase NC; apoptosis, 59.3 86 0.003 27.0 10.9 112 40-160 53-193 (316)
98 3m9w_A D-xylose-binding peripl 59.3 74 0.0025 26.2 11.4 76 47-126 3-80 (313)
99 2qh8_A Uncharacterized protein 58.5 39 0.0013 28.0 8.2 76 45-127 139-214 (302)
100 1mkz_A Molybdenum cofactor bio 58.4 62 0.0021 25.1 9.9 47 69-116 33-80 (172)
101 1pyo_A Caspase-2; apoptosis, c 58.2 64 0.0022 25.1 9.6 108 40-156 26-159 (167)
102 3e61_A Putative transcriptiona 57.7 51 0.0018 26.5 8.7 76 43-126 5-83 (277)
103 1qtn_A Caspase-8; apoptosis, d 57.5 65 0.0022 25.0 9.4 108 40-156 16-155 (164)
104 2hqb_A Transcriptional activat 57.4 35 0.0012 28.5 7.7 68 44-114 3-72 (296)
105 3td9_A Branched chain amino ac 57.3 49 0.0017 27.9 8.8 79 45-128 148-227 (366)
106 3bil_A Probable LACI-family tr 57.2 48 0.0016 28.1 8.7 77 44-126 64-142 (348)
107 2pju_A Propionate catabolism o 56.6 20 0.00068 29.5 5.8 65 47-125 107-171 (225)
108 3snr_A Extracellular ligand-bi 56.6 36 0.0012 28.5 7.7 79 45-129 134-214 (362)
109 2o20_A Catabolite control prot 56.4 65 0.0022 26.9 9.4 77 44-126 61-139 (332)
110 1jlj_A Gephyrin; globular alph 56.4 33 0.0011 27.2 7.0 31 86-116 58-89 (189)
111 3miz_A Putative transcriptiona 56.2 63 0.0022 26.4 9.1 72 43-117 10-82 (301)
112 2iz6_A Molybdenum cofactor car 56.0 32 0.0011 27.1 6.7 46 93-151 33-79 (176)
113 2h31_A Multifunctional protein 55.5 1E+02 0.0035 27.8 10.7 75 47-126 266-343 (425)
114 3bbl_A Regulatory protein of L 53.3 50 0.0017 26.9 7.9 78 45-126 3-84 (287)
115 3eaf_A ABC transporter, substr 53.3 41 0.0014 28.9 7.7 78 45-127 140-221 (391)
116 3o1i_D Periplasmic protein TOR 52.6 43 0.0015 27.3 7.4 78 43-125 2-84 (304)
117 3h5t_A Transcriptional regulat 52.6 48 0.0016 28.2 8.0 81 44-126 66-148 (366)
118 3rot_A ABC sugar transporter, 52.4 66 0.0022 26.3 8.6 47 80-126 33-83 (297)
119 3sbx_A Putative uncharacterize 52.3 27 0.00091 28.0 5.7 45 94-151 33-78 (189)
120 1t35_A Hypothetical protein YV 52.1 30 0.001 27.6 6.0 45 93-151 21-67 (191)
121 2pjk_A 178AA long hypothetical 51.2 85 0.0029 24.5 8.6 72 43-116 12-92 (178)
122 4evq_A Putative ABC transporte 50.8 57 0.0019 27.5 8.1 79 45-129 150-230 (375)
123 3hut_A Putative branched-chain 50.8 74 0.0025 26.6 8.8 78 45-129 138-218 (358)
124 1m72_A Caspase-1; caspase, cys 50.3 79 0.0027 26.5 8.7 113 38-159 23-158 (272)
125 1di6_A MOGA, molybdenum cofact 50.0 78 0.0027 25.2 8.2 48 69-116 28-77 (195)
126 1y5e_A Molybdenum cofactor bio 49.2 88 0.003 24.0 8.5 68 46-116 13-83 (169)
127 1usg_A Leucine-specific bindin 49.1 70 0.0024 26.5 8.3 78 45-128 137-216 (346)
128 1nw9_B Caspase 9, apoptosis-re 49.0 1.2E+02 0.004 25.4 10.0 113 40-161 14-158 (277)
129 1ydh_A AT5G11950; structural g 48.8 32 0.0011 28.1 5.8 44 93-149 29-73 (216)
130 2vk2_A YTFQ, ABC transporter p 48.7 83 0.0029 25.8 8.7 76 47-126 3-80 (306)
131 2hsg_A Glucose-resistance amyl 48.4 63 0.0021 27.0 7.9 77 44-125 58-135 (332)
132 3lkv_A Uncharacterized conserv 48.2 79 0.0027 26.3 8.5 77 44-127 138-214 (302)
133 2nn3_C Caspase-1; cysteine pro 48.0 92 0.0032 26.8 8.9 113 38-159 51-186 (310)
134 1byk_A Protein (trehalose oper 47.5 79 0.0027 25.0 8.1 66 46-116 2-69 (255)
135 3r7f_A Aspartate carbamoyltran 47.5 63 0.0021 27.8 7.7 64 82-159 94-164 (304)
136 3kke_A LACI family transcripti 46.6 1.2E+02 0.0041 24.8 9.4 80 43-126 12-92 (303)
137 3k4h_A Putative transcriptiona 46.2 98 0.0034 24.9 8.7 79 43-126 5-89 (292)
138 3sg0_A Extracellular ligand-bi 46.0 86 0.0029 26.4 8.5 79 45-129 158-238 (386)
139 3e3m_A Transcriptional regulat 45.9 1.3E+02 0.0045 25.2 9.7 77 44-126 68-146 (355)
140 3s5p_A Ribose 5-phosphate isom 45.7 1E+02 0.0035 24.1 8.0 71 38-116 13-89 (166)
141 3uug_A Multiple sugar-binding 45.6 1.3E+02 0.0043 24.8 10.1 78 46-127 3-82 (330)
142 3qua_A Putative uncharacterize 45.6 38 0.0013 27.3 5.7 46 93-151 41-87 (199)
143 3ksm_A ABC-type sugar transpor 45.4 96 0.0033 24.6 8.4 59 66-127 19-82 (276)
144 3i45_A Twin-arginine transloca 45.1 72 0.0025 27.2 7.9 81 45-129 141-223 (387)
145 2a33_A Hypothetical protein; s 45.1 40 0.0014 27.4 5.8 45 94-151 34-79 (215)
146 3kjx_A Transcriptional regulat 44.9 1.4E+02 0.0046 25.0 11.4 78 43-126 65-144 (344)
147 2iz6_A Molybdenum cofactor car 44.5 16 0.00053 29.0 3.1 53 108-175 111-170 (176)
148 2h3h_A Sugar ABC transporter, 44.1 1.3E+02 0.0043 24.7 9.1 35 92-126 44-79 (313)
149 4h1h_A LMO1638 protein; MCCF-l 44.0 53 0.0018 28.4 6.8 67 50-119 15-93 (327)
150 3h11_B Caspase-8; cell death, 43.7 1.4E+02 0.0049 24.9 9.5 113 40-161 10-154 (271)
151 2dko_A Caspase-3; low barrier 43.5 1E+02 0.0036 23.2 9.1 62 40-104 9-78 (146)
152 3hbm_A UDP-sugar hydrolase; PS 43.4 61 0.0021 27.3 6.9 28 105-150 225-252 (282)
153 3gyb_A Transcriptional regulat 43.2 58 0.002 26.2 6.7 70 43-117 2-71 (280)
154 2ql9_A Caspase-7; cysteine pro 42.2 1.1E+02 0.0037 24.0 7.8 62 40-104 37-106 (173)
155 4ekn_B Aspartate carbamoyltran 42.2 1E+02 0.0034 26.5 8.2 75 67-159 87-168 (306)
156 3p45_A Caspase-6; protease, hu 41.6 1.3E+02 0.0044 23.7 8.5 62 39-103 36-105 (179)
157 3rfq_A Pterin-4-alpha-carbinol 41.3 50 0.0017 26.2 5.7 70 44-116 28-100 (185)
158 4eys_A MCCC family protein; MC 41.0 89 0.003 27.2 7.8 76 46-125 4-93 (346)
159 2is8_A Molybdopterin biosynthe 41.0 56 0.0019 25.0 5.9 31 86-116 42-73 (164)
160 1jx6_A LUXP protein; protein-l 40.8 1.5E+02 0.0053 24.5 9.8 80 43-126 40-125 (342)
161 2lci_A Protein OR36; structura 40.8 95 0.0032 22.0 7.5 69 48-126 2-71 (134)
162 1qpz_A PURA, protein (purine n 40.4 1.6E+02 0.0055 24.5 10.5 69 44-117 56-126 (340)
163 3hcw_A Maltose operon transcri 40.2 51 0.0017 27.0 5.9 83 43-126 4-88 (295)
164 1rcu_A Conserved hypothetical 40.2 55 0.0019 26.2 5.8 45 93-150 46-90 (195)
165 3gv0_A Transcriptional regulat 40.2 1.3E+02 0.0045 24.2 8.5 80 43-126 5-86 (288)
166 1kq3_A Glycerol dehydrogenase; 39.9 26 0.0009 30.8 4.2 33 105-150 94-126 (376)
167 2g2c_A Putative molybdenum cof 39.9 45 0.0016 25.7 5.2 31 86-116 50-80 (167)
168 1ejb_A Lumazine synthase; anal 39.4 1.3E+02 0.0044 23.5 7.7 100 45-152 15-129 (168)
169 2ioy_A Periplasmic sugar-bindi 39.3 1.5E+02 0.0051 23.8 9.4 75 47-126 2-79 (283)
170 3dbi_A Sugar-binding transcrip 38.3 1.7E+02 0.0058 24.2 10.8 77 43-125 58-139 (338)
171 3ndc_A Precorrin-4 C(11)-methy 38.1 1.3E+02 0.0043 24.9 8.1 55 96-163 67-126 (264)
172 3g85_A Transcriptional regulat 37.4 36 0.0012 27.6 4.5 73 43-118 8-81 (289)
173 3qvl_A Putative hydantoin race 37.4 1.7E+02 0.0058 23.9 9.2 71 50-125 4-89 (245)
174 4ehd_A Caspase-3; caspase, apo 37.2 1.2E+02 0.0042 25.5 7.9 113 39-160 36-172 (277)
175 3h5o_A Transcriptional regulat 37.1 1.8E+02 0.0061 24.1 9.9 79 43-126 59-138 (339)
176 2wte_A CSA3; antiviral protein 36.9 70 0.0024 26.4 6.2 71 45-119 33-108 (244)
177 2h54_A Caspase-1; allosteric s 36.9 1.5E+02 0.0051 23.2 8.8 53 47-102 43-100 (178)
178 1weh_A Conserved hypothetical 36.9 51 0.0018 25.6 5.1 45 93-150 21-65 (171)
179 2ywx_A Phosphoribosylaminoimid 36.4 76 0.0026 24.6 5.8 60 64-126 13-73 (157)
180 3d02_A Putative LACI-type tran 36.0 1.7E+02 0.0058 23.5 9.8 35 92-126 48-83 (303)
181 2xvy_A Chelatase, putative; me 35.4 1.8E+02 0.0062 23.7 9.6 76 46-122 8-98 (269)
182 3kbq_A Protein TA0487; structu 34.7 95 0.0033 24.2 6.3 58 67-126 26-88 (172)
183 3i09_A Periplasmic branched-ch 33.6 1.1E+02 0.0039 25.7 7.3 79 45-129 139-219 (375)
184 1rvv_A Riboflavin synthase; tr 33.6 1.6E+02 0.0055 22.6 7.5 101 45-153 11-121 (154)
185 4e16_A Precorrin-4 C(11)-methy 33.5 1.3E+02 0.0046 24.5 7.5 55 96-163 68-127 (253)
186 2j32_A Caspase-3; Pro-caspase3 33.4 1.6E+02 0.0054 24.2 7.9 112 40-160 9-144 (250)
187 3o21_A Glutamate receptor 3; p 33.2 2.3E+02 0.0079 24.2 10.0 77 45-128 129-208 (389)
188 3nq4_A 6,7-dimethyl-8-ribityll 33.0 1.6E+02 0.0054 22.7 7.2 101 45-153 11-122 (156)
189 3r6w_A FMN-dependent NADH-azor 33.0 1.7E+02 0.0059 22.8 8.4 31 46-76 1-32 (212)
190 1hqk_A 6,7-dimethyl-8-ribityll 33.0 1.5E+02 0.0051 22.8 7.0 100 45-152 11-120 (154)
191 2qu7_A Putative transcriptiona 32.9 73 0.0025 25.8 5.7 68 44-117 6-75 (288)
192 3gw6_A Endo-N-acetylneuraminid 32.8 17 0.00057 31.0 1.6 14 107-120 47-60 (275)
193 1pea_A Amidase operon; gene re 32.7 1.8E+02 0.0061 24.6 8.5 76 46-127 140-219 (385)
194 3od5_A Caspase-6; caspase doma 32.5 2.2E+02 0.0075 23.8 8.8 114 40-162 14-151 (278)
195 1kz1_A 6,7-dimethyl-8-ribityll 32.1 1.8E+02 0.006 22.5 7.7 102 45-154 16-128 (159)
196 3cs3_A Sugar-binding transcrip 31.8 1.8E+02 0.0061 23.2 7.9 72 44-126 6-77 (277)
197 2h0a_A TTHA0807, transcription 31.7 81 0.0028 25.2 5.8 83 48-148 1-84 (276)
198 3sir_A Caspase; hydrolase; 2.6 31.6 1.5E+02 0.0052 24.5 7.5 113 40-160 13-147 (259)
199 1jye_A Lactose operon represso 31.4 2.3E+02 0.0078 23.7 10.1 67 44-114 59-127 (349)
200 1t35_A Hypothetical protein YV 31.3 47 0.0016 26.4 4.1 35 108-150 101-135 (191)
201 2obx_A DMRL synthase 1, 6,7-di 31.2 1.7E+02 0.0059 22.5 7.1 99 46-152 11-119 (157)
202 1uuy_A CNX1, molybdopterin bio 31.1 1E+02 0.0035 23.5 5.9 41 86-126 51-97 (167)
203 2x9a_A Attachment protein G3P; 31.0 14 0.00048 24.2 0.7 11 108-118 40-50 (65)
204 3c5y_A Ribose/galactose isomer 30.9 71 0.0024 26.4 5.1 76 46-125 19-104 (231)
205 1zl0_A Hypothetical protein PA 30.9 98 0.0033 26.6 6.3 66 49-119 19-95 (311)
206 1di0_A Lumazine synthase; tran 30.8 1.8E+02 0.006 22.5 7.1 101 44-152 8-118 (158)
207 3e4c_A Caspase-1; zymogen, inf 30.7 2.2E+02 0.0074 24.2 8.5 104 46-158 59-190 (302)
208 3huu_A Transcription regulator 30.1 1.4E+02 0.0048 24.3 7.1 83 43-126 19-103 (305)
209 2dri_A D-ribose-binding protei 29.7 1.8E+02 0.0061 23.2 7.6 75 47-126 2-79 (271)
210 2amj_A Modulator of drug activ 29.6 1.4E+02 0.0048 23.5 6.7 62 46-112 13-77 (204)
211 3f6r_A Flavodoxin; FMN binding 28.9 1.6E+02 0.0056 21.2 6.7 106 46-174 1-112 (148)
212 1xxa_A ARGR, arginine represso 28.7 39 0.0013 22.9 2.7 31 88-118 21-53 (78)
213 1f1j_A Caspase-7 protease; cas 28.6 1.9E+02 0.0066 24.6 7.8 112 40-160 62-197 (305)
214 3fni_A Putative diflavin flavo 28.4 1.9E+02 0.0064 21.7 7.6 72 47-125 5-80 (159)
215 1wek_A Hypothetical protein TT 28.3 2.3E+02 0.008 22.8 8.2 54 82-148 39-99 (217)
216 3h5l_A Putative branched-chain 28.2 1.7E+02 0.0059 25.1 7.6 77 45-127 163-242 (419)
217 3ctp_A Periplasmic binding pro 27.7 2.2E+02 0.0077 23.4 8.1 68 44-117 58-127 (330)
218 1fy2_A Aspartyl dipeptidase; s 27.6 2.2E+02 0.0074 22.9 7.6 67 46-126 31-98 (229)
219 3hsy_A Glutamate receptor 2; l 27.3 1.9E+02 0.0066 24.4 7.7 78 44-128 119-202 (376)
220 3h6g_A Glutamate receptor, ion 27.2 1.5E+02 0.0051 25.2 7.0 78 45-129 137-215 (395)
221 3hh1_A Tetrapyrrole methylase 27.0 1.7E+02 0.0058 20.7 7.7 38 100-150 74-116 (117)
222 1t5b_A Acyl carrier protein ph 26.6 2.1E+02 0.0072 21.6 8.4 31 46-76 1-32 (201)
223 3w01_A Heptaprenylglyceryl pho 25.9 1E+02 0.0036 25.4 5.3 52 97-158 28-79 (235)
224 3s2u_A UDP-N-acetylglucosamine 25.7 2.6E+02 0.0088 23.8 8.3 19 105-123 252-270 (365)
225 3ky8_A Putative riboflavin bio 25.7 57 0.002 25.9 3.6 30 93-123 114-143 (197)
226 3sgw_A Ribose 5-phosphate isom 25.7 1.4E+02 0.0049 23.7 5.8 41 30-75 13-53 (184)
227 3n0w_A ABC branched chain amin 25.4 2.3E+02 0.0079 23.7 7.9 78 45-128 141-220 (379)
228 3csu_A Protein (aspartate carb 25.3 2.5E+02 0.0086 24.0 7.9 66 81-159 99-171 (310)
229 1jdp_A NPR-C, atrial natriuret 25.1 2.9E+02 0.01 23.8 8.6 81 45-128 153-234 (441)
230 4gpa_A Glutamate receptor 4; P 24.6 3E+02 0.01 22.8 9.0 77 45-128 129-207 (389)
231 4f11_A Gamma-aminobutyric acid 24.3 3.2E+02 0.011 23.3 8.7 78 45-129 153-230 (433)
232 1gud_A ALBP, D-allose-binding 24.2 2.8E+02 0.0094 22.2 7.9 75 47-126 2-81 (288)
233 1b4b_A Arginine repressor; cor 23.6 63 0.0022 21.3 2.9 32 87-118 18-50 (71)
234 3l4e_A Uncharacterized peptida 23.6 1.6E+02 0.0055 23.4 6.0 96 47-152 28-123 (206)
235 2qh8_A Uncharacterized protein 23.5 2.2E+02 0.0076 23.1 7.2 66 44-114 6-78 (302)
236 1b4a_A Arginine repressor; hel 23.3 1.7E+02 0.0059 22.2 5.8 35 83-118 93-128 (149)
237 2zfz_A Arginine repressor; DNA 23.2 75 0.0026 21.3 3.3 33 86-118 25-58 (79)
238 2c92_A 6,7-dimethyl-8-ribityll 23.2 2.4E+02 0.0083 21.7 6.7 98 45-153 16-122 (160)
239 3lft_A Uncharacterized protein 23.1 1.7E+02 0.006 23.7 6.4 64 46-114 2-71 (295)
240 3vzx_A Heptaprenylglyceryl pho 23.1 99 0.0034 25.4 4.6 51 97-157 23-73 (228)
241 4hf7_A Putative acylhydrolase; 22.8 83 0.0028 24.4 4.1 41 111-162 57-97 (209)
242 1s4d_A Uroporphyrin-III C-meth 22.8 2.9E+02 0.0099 22.8 7.7 55 96-163 83-142 (280)
243 3fdx_A Putative filament prote 22.8 2E+02 0.0069 20.1 7.8 44 93-149 94-143 (143)
244 1sqs_A Conserved hypothetical 22.6 2.9E+02 0.01 21.9 8.3 29 47-76 2-31 (242)
245 2qip_A Protein of unknown func 22.5 1.2E+02 0.0042 22.9 4.9 24 104-127 107-130 (165)
246 1c2y_A Protein (lumazine synth 22.4 2.6E+02 0.0088 21.5 6.7 100 45-153 12-121 (156)
247 2i0f_A 6,7-dimethyl-8-ribityll 22.3 2.7E+02 0.0091 21.4 7.0 97 47-154 13-124 (157)
248 3en0_A Cyanophycinase; serine 22.3 1.2E+02 0.0041 25.8 5.2 12 105-116 110-121 (291)
249 3mt0_A Uncharacterized protein 22.2 3.1E+02 0.011 22.1 8.5 75 63-152 50-130 (290)
250 3o4f_A Spermidine synthase; am 21.7 31 0.0011 29.6 1.3 17 107-123 86-103 (294)
251 1byk_A Protein (trehalose oper 21.6 2.1E+02 0.007 22.4 6.4 81 45-129 114-195 (255)
252 3iwt_A 178AA long hypothetical 21.6 2.4E+02 0.0081 21.5 6.5 45 69-116 45-92 (178)
253 2iuf_A Catalase; oxidoreductas 21.4 1.6E+02 0.0054 28.4 6.3 100 44-163 527-651 (688)
254 3jvd_A Transcriptional regulat 21.2 2.2E+02 0.0074 23.7 6.7 68 43-114 61-128 (333)
255 1mjh_A Protein (ATP-binding do 21.0 2.4E+02 0.0082 20.3 7.4 47 93-151 108-160 (162)
256 3nut_A Precorrin-3 methylase; 20.8 2.5E+02 0.0085 22.7 6.8 45 100-153 73-121 (251)
257 1ccw_A Protein (glutamate muta 20.6 72 0.0025 23.6 3.1 67 49-123 5-72 (137)
258 1v95_A Nuclear receptor coacti 20.5 2.7E+02 0.0091 20.7 7.2 65 43-114 5-69 (130)
259 1rcu_A Conserved hypothetical 20.3 51 0.0018 26.4 2.3 32 104-149 117-149 (195)
260 2vzf_A NADH-dependent FMN redu 20.2 3E+02 0.01 21.1 8.3 77 46-128 2-94 (197)
261 2e0n_A Precorrin-2 C20-methylt 20.2 3E+02 0.01 22.3 7.2 54 97-163 88-146 (259)
No 1
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=100.00 E-value=2e-39 Score=288.69 Aligned_cols=186 Identities=24% Similarity=0.384 Sum_probs=150.3
Q ss_pred CCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 43 SSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 43 ~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
..++++++||+||.||++++.+.|+++++.|+.. .+++.++.|+.++|+.++++++. +++|.||++|||||+|+|+
T Consensus 5 ~~~m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~---~~~~~~~~t~~~~~a~~~~~~~~-~~~d~vv~~GGDGTl~~v~ 80 (304)
T 3s40_A 5 KTKFEKVLLIVNPKAGQGDLHTNLTKIVPPLAAA---FPDLHILHTKEQGDATKYCQEFA-SKVDLIIVFGGDGTVFECT 80 (304)
T ss_dssp CCSCSSEEEEECTTCSSSCHHHHHHHHHHHHHHH---CSEEEEEECCSTTHHHHHHHHHT-TTCSEEEEEECHHHHHHHH
T ss_pred cCCCCEEEEEECcccCCCchHHHHHHHHHHHHHc---CCeEEEEEccCcchHHHHHHHhh-cCCCEEEEEccchHHHHHH
Confidence 3458999999999999999889999998888875 35677789999999999999986 4899999999999999999
Q ss_pred HHHHhCCcccccccccccCCceEEEecCCChhHHhhhcCCCCCHHHHHHHHHcCceeeeeEEEEEcCCCCceEEEEEecc
Q 025520 123 NGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRSWVDVGVINGETGEPHYFINVADL 202 (251)
Q Consensus 123 n~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~al~~i~~g~~~~iDvg~v~~~~~~~~~f~n~~~i 202 (251)
|+|... ..++||++||+||+|+||++++++.++.++++.|+++..+++|++++++ +||+|++++
T Consensus 81 ~~l~~~-----------~~~~~l~iiP~Gt~N~~ar~lg~~~~~~~a~~~i~~g~~~~iDlg~v~~-----~~F~~~~~~ 144 (304)
T 3s40_A 81 NGLAPL-----------EIRPTLAIIPGGTCNDFSRTLGVPQNIAEAAKLITKEHVKPVDVAKANG-----QHFLNFWGI 144 (304)
T ss_dssp HHHTTC-----------SSCCEEEEEECSSCCHHHHHTTCCSSHHHHHHHHTTCCEEEEEEEEETT-----EEESSEEEE
T ss_pred HHHhhC-----------CCCCcEEEecCCcHHHHHHHcCCCccHHHHHHHHHhCCeEEEEEEEECC-----EEEEEEEee
Confidence 999742 2579999999999999999999999999999999999999999999987 999999999
Q ss_pred cchhhhccccc--cccccCchhHHHHHHHHHHhCCCccEEEEECCEEE
Q 025520 203 HLSAKAGYYAS--RYKRFGNLCYVIGALQAFMGHRNQDLRVKVSSCLY 248 (251)
Q Consensus 203 G~~a~v~~~~~--~~~~~G~l~Y~~~~~~~~~~~~~~~~~i~~dg~~~ 248 (251)
||||++....+ .++++|+++|++++++.++++++++++|++||+.+
T Consensus 145 G~da~v~~~~~~~~k~~~G~~~Y~~~~l~~l~~~~~~~~~i~~dg~~~ 192 (304)
T 3s40_A 145 GLVSEVSNNIDAEEKAKLGKIGYYLSTIRTVKNAETFPVKITYDGQVY 192 (304)
T ss_dssp C------------------CHHHHTTTC------CCEEEEEEETTEEE
T ss_pred hHHHHHHHhcCHHHhhcCCchHHHHHHHHHHhhcCCceEEEEECCEEE
Confidence 99999987653 45678999999999999999999999999999875
No 2
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=100.00 E-value=2.8e-36 Score=271.80 Aligned_cols=185 Identities=29% Similarity=0.431 Sum_probs=159.5
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l 125 (251)
+++++||+||.||++++.+.|+++.+.|+.. ++++.+..|+.++++.++++++..+++|.||++||||||++|+|+|
T Consensus 24 m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~---g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGDGTv~~v~~~l 100 (337)
T 2qv7_A 24 RKRARIIYNPTSGKEQFKRELPDALIKLEKA---GYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDGTLNEVVNGI 100 (337)
T ss_dssp CEEEEEEECTTSTTSCHHHHHHHHHHHHHHT---TEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCCchHHHHHHHHHHHHHc---CCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcCchHHHHHHHHH
Confidence 5789999999999988888898898888874 4677778888989999999888878899999999999999999999
Q ss_pred HhCCcccccccccccCCceEEEecCCChhHHhhhcCCCCCHHHHHHHHHcCceeeeeEEEEEcCCCCceEEEEEecccch
Q 025520 126 FSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRSWVDVGVINGETGEPHYFINVADLHLS 205 (251)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~al~~i~~g~~~~iDvg~v~~~~~~~~~f~n~~~iG~~ 205 (251)
+.. ..++||++||+||+|+||+.||++.++.++++.|++|..+++|++++++ +||+|++++|++
T Consensus 101 ~~~-----------~~~~pl~iIP~GT~N~lAr~Lg~~~~~~~al~~i~~g~~~~iD~g~v~~-----r~fl~~~~~G~~ 164 (337)
T 2qv7_A 101 AEK-----------PNRPKLGVIPMGTVNDFGRALHIPNDIMGALDVIIEGHSTKVDIGKMNN-----RYFINLAAGGQL 164 (337)
T ss_dssp TTC-----------SSCCEEEEEECSSCCHHHHHTTCCSSHHHHHHHHHHTCEEEEEEEEETT-----EEESSEEEEECB
T ss_pred HhC-----------CCCCcEEEecCCcHhHHHHHcCCCCCHHHHHHHHHcCCcEEEEEEEECC-----EEEEEEeeeccc
Confidence 642 3579999999999999999999999999999999999999999999987 999999999999
Q ss_pred hhhccccc--cccccCchhHHHHHHHHHHhCCCccEEEEECCEEEE
Q 025520 206 AKAGYYAS--RYKRFGNLCYVIGALQAFMGHRNQDLRVKVSSCLYI 249 (251)
Q Consensus 206 a~v~~~~~--~~~~~G~l~Y~~~~~~~~~~~~~~~~~i~~dg~~~~ 249 (251)
+++....+ .++++|+++|.+.+++.+++.++++++|++||+.+.
T Consensus 165 a~v~~~~~~~~k~~~G~~~Y~~~~l~~l~~~~~~~~~i~~dg~~~~ 210 (337)
T 2qv7_A 165 TQVSYETPSKLKSIVGPFAYYIKGFEMLPQMKAVDLRIEYDGNVFQ 210 (337)
T ss_dssp CC-------------CGGGSCCCTTTTGGGBCCEEEEEEETTEEEE
T ss_pred HHHHHHhhHHHHhccChHHHHHHHHHHHHhCCCccEEEEECCEEEE
Confidence 99877643 456689999999999999999999999999998864
No 3
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=100.00 E-value=1e-35 Score=267.70 Aligned_cols=185 Identities=23% Similarity=0.328 Sum_probs=156.8
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNG 124 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~ 124 (251)
+++++.||+||.||++ +.|+++++.|++. .+++.+..|+.++++.++++++..+++|.||++||||||++|+|+
T Consensus 28 ~~~~~~vi~Np~sg~~---~~~~~i~~~l~~~---g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GGDGTl~~v~~~ 101 (332)
T 2bon_A 28 EFPASLLILNGKSTDN---LPLREAIMLLREE---GMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDGTINEVSTA 101 (332)
T ss_dssp --CCEEEEECSSSTTC---HHHHHHHHHHHTT---TCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHH
T ss_pred hcceEEEEECCCCCCC---chHHHHHHHHHHc---CCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEccchHHHHHHHH
Confidence 4789999999999876 5677888888764 466777888889999999988887889999999999999999999
Q ss_pred HHhCCcccccccccccCCceEEEecCCChhHHhhhcCCCCCHHHHHHHHHcCceeeeeEEEEEcCCCCce-EEEEEeccc
Q 025520 125 FFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRSWVDVGVINGETGEPH-YFINVADLH 203 (251)
Q Consensus 125 l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~al~~i~~g~~~~iDvg~v~~~~~~~~-~f~n~~~iG 203 (251)
|.... ...++||++||+||+|+||++++++.++.++++.+++|..+++|++++++ + +|+|++++|
T Consensus 102 l~~~~---------~~~~~plgiiP~Gt~N~fa~~l~i~~~~~~al~~i~~g~~~~iDlg~v~~-----r~~fl~~~~~G 167 (332)
T 2bon_A 102 LIQCE---------GDDIPALGILPLGTANDFATSVGIPEALDKALKLAIAGDAIAIDMAQVNK-----QTCFINMATGG 167 (332)
T ss_dssp HHHCC---------SSCCCEEEEEECSSSCHHHHHTTCCSSHHHHHHHHHHSEEEEEEEEEETT-----SCEESSEEEEE
T ss_pred Hhhcc---------cCCCCeEEEecCcCHHHHHHhcCCCCCHHHHHHHHHcCCeEEeeEEEECC-----ceEEEEEEeEC
Confidence 98531 13578999999999999999999999999999999999999999999987 6 999999999
Q ss_pred chhhhcccc--ccccccCchhHHHHHHHHHHhCCCccEEEEECCEEEE
Q 025520 204 LSAKAGYYA--SRYKRFGNLCYVIGALQAFMGHRNQDLRVKVSSCLYI 249 (251)
Q Consensus 204 ~~a~v~~~~--~~~~~~G~l~Y~~~~~~~~~~~~~~~~~i~~dg~~~~ 249 (251)
|++++.... +.++++|+++|.+.+++.+++.++++++|++||+.+.
T Consensus 168 ~da~v~~~~~~~~k~~~G~~~Y~~~~l~~l~~~~~~~~~i~~dg~~~~ 215 (332)
T 2bon_A 168 FGTRITTETPEKLKAALGSVSYIIHGLMRMDTLQPDRCEIRGENFHWQ 215 (332)
T ss_dssp EEEEC----------CCHHHHHHHHHTSCEEEEECEEEEEEETTEEEE
T ss_pred ccHHHHHHhhHHhHhcccHHHHHHHHHHHHhhCCCeeEEEEECCEEEE
Confidence 999987643 3456789999999999999999999999999999864
No 4
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=99.52 E-value=2.6e-15 Score=132.21 Aligned_cols=124 Identities=14% Similarity=0.196 Sum_probs=80.4
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCcc-H---HHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPS-H---AIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~-~---a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
+|++.||+||.+ ++..+.++++...|++. ++++.+..+.... + ......+...+++|.||++|||||++++
T Consensus 5 mkki~ii~np~~--~~~~~~~~~i~~~l~~~---g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~GGDGT~l~a 79 (292)
T 2an1_A 5 FKCIGIVGHPRH--PTALTTHEMLYRWLCDQ---GYEVIVEQQIAHELQLKNVPTGTLAEIGQQADLAVVVGGDGNMLGA 79 (292)
T ss_dssp CCEEEEECC---------CHHHHHHHHHHHT---TCEEEEEHHHHHHTTCSSCCEECHHHHHHHCSEEEECSCHHHHHHH
T ss_pred CcEEEEEEcCCC--HHHHHHHHHHHHHHHHC---CCEEEEecchhhhcccccccccchhhcccCCCEEEEEcCcHHHHHH
Confidence 789999999986 34456677788888764 3555443332100 0 0000122234568999999999999999
Q ss_pred HHHHHhCCcccccccccccCCce-EEEecCCChhHHhhhcCCCCCHHHHHHHHHcCceeeeeEEEEEcCCCCceEEEEEe
Q 025520 122 VNGFFSAGKLVTNHNRESAHSTA-LGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRSWVDVGVINGETGEPHYFINVA 200 (251)
Q Consensus 122 ln~l~~~~~~~~~~~~~~~~~~~-lgilP~GTgN~fa~~lg~~~~~~~al~~i~~g~~~~iDvg~v~~~~~~~~~f~n~~ 200 (251)
++++.. ..+| ||+ |+||.|.|+. ++ +.++.++++.+++|..+ ++. |+|++..
T Consensus 80 ~~~~~~-------------~~~P~lGI-~~Gt~gfla~-~~-~~~~~~al~~i~~g~~~------~~~-----r~~l~~~ 132 (292)
T 2an1_A 80 ARTLAR-------------YDINVIGI-NRGNLGFLTD-LD-PDNALQQLSDVLEGRYI------SEK-----RFLLEAQ 132 (292)
T ss_dssp HHHHTT-------------SSCEEEEB-CSSSCCSSCC-BC-TTSHHHHHHHHHTTCEE------EEE-----EEEEEEE
T ss_pred HHHhhc-------------CCCCEEEE-ECCCcccCCc-CC-HHHHHHHHHHHHcCCCE------EEE-----eEEEEEE
Confidence 999963 2345 665 8999666664 66 77899999999999763 555 8888754
Q ss_pred c
Q 025520 201 D 201 (251)
Q Consensus 201 ~ 201 (251)
.
T Consensus 133 ~ 133 (292)
T 2an1_A 133 V 133 (292)
T ss_dssp E
T ss_pred E
Confidence 3
No 5
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=99.28 E-value=8.7e-13 Score=114.26 Aligned_cols=107 Identities=15% Similarity=0.200 Sum_probs=73.5
Q ss_pred eEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHh
Q 025520 48 DLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFS 127 (251)
Q Consensus 48 ~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~ 127 (251)
++.||+||.++++ +.+.++++ ...+. .+++ .+. + +...+++|.||++|||||++++++.+.
T Consensus 2 ki~ii~Np~~~~~-~~~~~~~i----~~~l~-~~~~---~~~---~------~~~~~~~D~vv~~GGDGTll~~a~~~~- 62 (258)
T 1yt5_A 2 KIAILYREEREKE-GEFLKEKI----SKEHE-VIEF---GEA---N------APGRVTADLIVVVGGDGTVLKAAKKAA- 62 (258)
T ss_dssp EEEEEECGGGHHH-HHHHHHHH----TTTSE-EEEE---EES---S------SCSCBCCSEEEEEECHHHHHHHHTTBC-
T ss_pred EEEEEEeCCCchH-HHHHHHHH----HHHhc-CCce---ecc---c------ccccCCCCEEEEEeCcHHHHHHHHHhC-
Confidence 6899999999764 44443333 33332 2232 121 1 223457899999999999999999885
Q ss_pred CCcccccccccccCCce-EEEecCCChhHHhhhcCCCCCHHHHHHHHHcCceeeeeEEEEEcCCCCceEEEEEe
Q 025520 128 AGKLVTNHNRESAHSTA-LGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRSWVDVGVINGETGEPHYFINVA 200 (251)
Q Consensus 128 ~~~~~~~~~~~~~~~~~-lgilP~GTgN~fa~~lg~~~~~~~al~~i~~g~~~~iDvg~v~~~~~~~~~f~n~~ 200 (251)
. .+| ||+ +.||.| |...+. +.++.++++.+++|..+ ++. ++|++..
T Consensus 63 ------------~-~~PilGI-n~G~~G-fl~~~~-~~~~~~al~~i~~g~~~------i~~-----r~~l~~~ 109 (258)
T 1yt5_A 63 ------------D-GTPMVGF-KAGRLG-FLTSYT-LDEIDRFLEDLRNWNFR------EET-----RWFIQIE 109 (258)
T ss_dssp ------------T-TCEEEEE-ESSSCC-SSCCBC-GGGHHHHHHHHHTTCCE------EEE-----EEEEEEE
T ss_pred ------------C-CCCEEEE-ECCCCC-ccCcCC-HHHHHHHHHHHHcCCce------EEE-----EEEEEEE
Confidence 2 455 666 699995 444676 77899999999999764 444 7777654
No 6
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=99.21 E-value=6.8e-12 Score=109.44 Aligned_cols=96 Identities=17% Similarity=0.197 Sum_probs=69.9
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFF 126 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~ 126 (251)
+++.||+||. .++.+.++++...|++. ++++ . .+++|.||++|||||++++++.+.
T Consensus 1 mki~ii~n~~---~~~~~~~~~l~~~l~~~---g~~v---~---------------~~~~D~vv~lGGDGT~l~aa~~~~ 56 (272)
T 2i2c_A 1 MKYMITSKGD---EKSDLLRLNMIAGFGEY---DMEY---D---------------DVEPEIVISIGGDGTFLSAFHQYE 56 (272)
T ss_dssp CEEEEEECCS---HHHHHHHHHHHHHHTTS---SCEE---C---------------SSSCSEEEEEESHHHHHHHHHHTG
T ss_pred CEEEEEECCC---HHHHHHHHHHHHHHHHC---CCEe---C---------------CCCCCEEEEEcCcHHHHHHHHHHh
Confidence 3689999973 34455566666666553 2333 0 357899999999999999999986
Q ss_pred hCCcccccccccccCCceEEEecCCChhHHhhhcCCCCCHHHHHHHHHcCcee
Q 025520 127 SAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRS 179 (251)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~al~~i~~g~~~ 179 (251)
.. ...+|+.-||.|| |+|+..+. +.+++++++.+++|..+
T Consensus 57 ~~-----------~~~~PilGIn~G~-lgfl~~~~-~~~~~~~l~~l~~g~~~ 96 (272)
T 2i2c_A 57 ER-----------LDEIAFIGIHTGH-LGFYADWR-PAEADKLVKLLAKGEYQ 96 (272)
T ss_dssp GG-----------TTTCEEEEEESSS-CCSSCCBC-GGGHHHHHHHHHTTCCE
T ss_pred hc-----------CCCCCEEEEeCCC-CCcCCcCC-HHHHHHHHHHHHcCCCE
Confidence 31 1256744449999 66888886 77899999999999764
No 7
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=99.18 E-value=3e-11 Score=107.10 Aligned_cols=114 Identities=14% Similarity=0.140 Sum_probs=72.8
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCcc----------------HHHHHHH-HHHHcCCCE
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPS----------------HAIDITR-EAIKEGADA 108 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~----------------~a~~~~~-~~~~~~~d~ 108 (251)
+++++||+||.++ ...+.++++...|++. ++++.+..+.... +.....+ +...+++|.
T Consensus 4 m~ki~iI~n~~~~--~~~~~~~~l~~~L~~~---g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 78 (307)
T 1u0t_A 4 HRSVLLVVHTGRD--EATETARRVEKVLGDN---KIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCEL 78 (307)
T ss_dssp -CEEEEEESSSGG--GGSHHHHHHHHHHHTT---TCEEEEEC-----------------------------------CCC
T ss_pred CCEEEEEEeCCCH--HHHHHHHHHHHHHHHC---CCEEEEecchhhhhhcccccccccccccccccccccccccccCCCE
Confidence 6899999999874 3456677777788764 3555444443221 1111111 124457899
Q ss_pred EEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhhcCCCCCHHHHHHHHHcCcee
Q 025520 109 VIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRS 179 (251)
Q Consensus 109 ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~al~~i~~g~~~ 179 (251)
||++|||||++++++.+.. ..+|+.-|+.||.|.|+. +. +.++.++++.+++|..+
T Consensus 79 vi~~GGDGT~l~a~~~~~~-------------~~~pvlgi~~G~~gfl~~-~~-~~~~~~~~~~i~~g~~~ 134 (307)
T 1u0t_A 79 VLVLGGDGTFLRAAELARN-------------ASIPVLGVNLGRIGFLAE-AE-AEAIDAVLEHVVAQDYR 134 (307)
T ss_dssp EEEEECHHHHHHHHHHHHH-------------HTCCEEEEECSSCCSSCS-EE-GGGHHHHHHHHHHTCCE
T ss_pred EEEEeCCHHHHHHHHHhcc-------------CCCCEEEEeCCCCccCcc-cC-HHHHHHHHHHHHcCCcE
Confidence 9999999999999999863 234534458999987774 53 67899999999998653
No 8
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=98.49 E-value=9.8e-08 Score=86.99 Aligned_cols=113 Identities=18% Similarity=0.294 Sum_probs=72.7
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHH---------------------HHHH
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDIT---------------------REAI 102 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~---------------------~~~~ 102 (251)
..+++++||.||.. ....+.+.++...|.... .++++ +..+.. +.++. .+..
T Consensus 39 ~~~k~V~II~n~~~--~~~~~~~~~l~~~L~~~~-~gi~V--~ve~~~--a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (388)
T 3afo_A 39 NPLQNVYITKKPWT--PSTREAMVEFITHLHESY-PEVNV--IVQPDV--AEEISQDFKSPLENDPNRPHILYTGPEQDI 111 (388)
T ss_dssp SCCCEEEEEECTTC--HHHHHHHHHHHHHHHHHC-TTCEE--ECCHHH--HHHHHTTCCSCGGGCTTSCEEEEECCHHHH
T ss_pred CCCcEEEEEEeCCC--HHHHHHHHHHHHHHHHhC-CCeEE--EEeCch--hhhhhhhccccccccccccccccccchhhc
Confidence 35799999999874 344555666777776642 12333 322111 11110 0112
Q ss_pred HcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCc-eEEEecCCChhHHhhhcCCCCCHHHHHHHHHcCce
Q 025520 103 KEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHST-ALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVR 178 (251)
Q Consensus 103 ~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~-~lgilP~GTgN~fa~~lg~~~~~~~al~~i~~g~~ 178 (251)
.+++|.||++|||||+..++..+.. ..+ ||--|++||. +|...+.. .+..++++.+++|..
T Consensus 112 ~~~~DlVIvlGGDGTlL~aa~~~~~-------------~~vpPiLGIN~G~l-GFLt~~~~-~~~~~al~~il~g~~ 173 (388)
T 3afo_A 112 VNRTDLLVTLGGDGTILHGVSMFGN-------------TQVPPVLAFALGTL-GFLSPFDF-KEHKKVFQEVISSRA 173 (388)
T ss_dssp HHHCSEEEEEESHHHHHHHHHTTTT-------------SCCCCEEEEECSSC-CSSCCEEG-GGHHHHHHHHHTTCC
T ss_pred ccCCCEEEEEeCcHHHHHHHHHhcc-------------cCCCeEEEEECCCc-ccCCcCCh-HHHHHHHHHHhcCCc
Confidence 3468999999999999999998742 233 5555599996 55555663 478899999999864
No 9
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=97.70 E-value=8.6e-05 Score=64.56 Aligned_cols=93 Identities=15% Similarity=0.157 Sum_probs=61.8
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFF 126 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~ 126 (251)
.++.|+.|+... .+++...|++. ++++.+. ..... ..++.|.||++|||||+..++..+.
T Consensus 30 mki~iv~~~~~~-------~~~l~~~L~~~---g~~v~~~-~~~~~---------~~~~~DlvIvlGGDGT~L~aa~~~~ 89 (278)
T 1z0s_A 30 MRAAVVYKTDGH-------VKRIEEALKRL---EVEVELF-NQPSE---------ELENFDFIVSVGGDGTILRILQKLK 89 (278)
T ss_dssp CEEEEEESSSTT-------HHHHHHHHHHT---TCEEEEE-SSCCG---------GGGGSSEEEEEECHHHHHHHHTTCS
T ss_pred eEEEEEeCCcHH-------HHHHHHHHHHC---CCEEEEc-ccccc---------ccCCCCEEEEECCCHHHHHHHHHhC
Confidence 469999998642 45566677764 3444322 21111 1136899999999999999988663
Q ss_pred hCCcccccccccccCCceEEEecCCChhHHhhhcCCCCCHHHHHHHHHc
Q 025520 127 SAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAK 175 (251)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~al~~i~~ 175 (251)
.. +||--|..|+-+-|+ .+. +.+.+++++.+++
T Consensus 90 -------------~~-~PilGIN~G~lGFLt-~~~-~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 90 -------------RC-PPIFGINTGRVGLLT-HAS-PENFEVELKKAVE 122 (278)
T ss_dssp -------------SC-CCEEEEECSSSCTTC-CBB-TTBCHHHHHHHHH
T ss_pred -------------CC-CcEEEECCCCCcccc-ccC-HHHHHHHHHHHHh
Confidence 23 888888999854444 443 3467788888875
No 10
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=97.32 E-value=0.00062 Score=61.31 Aligned_cols=114 Identities=18% Similarity=0.267 Sum_probs=70.6
Q ss_pred CCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHH---------HHH---------HHc
Q 025520 43 SSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDIT---------REA---------IKE 104 (251)
Q Consensus 43 ~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~---------~~~---------~~~ 104 (251)
...+++++||--|.. ........++...|.+. ++++.+ +.....+. .+. .+. ..+
T Consensus 35 ~~~~k~I~iv~K~~~--~~~~~~~~~l~~~L~~~---~~~V~v-e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (365)
T 3pfn_A 35 NKSPKSVLVIKKMRD--ASLLQPFKELCTHLMEE---NMIVYV-EKKVLEDP-AIASDESFGAVKKKFCTFREDYDDISN 107 (365)
T ss_dssp SSCCCEEEEEECTTC--GGGHHHHHHHHHHHHHT---SCEEEE-EHHHHHSH-HHHHCSTTHHHHHHCEEECTTTCCCTT
T ss_pred CCCCCEEEEEecCCC--HHHHHHHHHHHHHHHHC---CCEEEE-ehHHhhhh-ccccccccccccccccccccChhhccc
Confidence 346899999998864 23345556666666663 344422 11111110 010 000 124
Q ss_pred CCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhhcCCCCCHHHHHHHHHcCce
Q 025520 105 GADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVR 178 (251)
Q Consensus 105 ~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~al~~i~~g~~ 178 (251)
.+|.||++|||||+-.++..+. ...+||--+.+|+ -.|-..+.. .+..++++.+++|..
T Consensus 108 ~~DlvI~lGGDGT~L~aa~~~~-------------~~~~PvlGiN~G~-LGFLt~~~~-~~~~~~l~~vl~g~~ 166 (365)
T 3pfn_A 108 QIDFIICLGGDGTLLYASSLFQ-------------GSVPPVMAFHLGS-LGFLTPFSF-ENFQSQVTQVIEGNA 166 (365)
T ss_dssp TCSEEEEESSTTHHHHHHHHCS-------------SSCCCEEEEESSS-CTTTCCEES-TTHHHHHHHHHHSCC
T ss_pred CCCEEEEEcChHHHHHHHHHhc-------------cCCCCEEEEcCCC-CccceeecH-HHHHHHHHHHHcCCC
Confidence 6799999999999999998763 2457777777885 344444443 478899999998854
No 11
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=91.14 E-value=0.94 Score=40.16 Aligned_cols=82 Identities=16% Similarity=0.133 Sum_probs=53.8
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEec---C-CccHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLT---S-GPSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t---~-~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
.++++|+..+.. ....+++...|+.. .+.++.. . +.+...+.++.+...++|.||.+|| |++.++
T Consensus 34 ~~r~liVtd~~~-----~~~~~~v~~~L~~~-----~~~v~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-Gs~iD~ 102 (353)
T 3hl0_A 34 LSRALVLSTPQQ-----KGDAEALASRLGRL-----AAGVFSEAAMHTPVEVTKTAVEAYRAAGADCVVSLGG-GSTTGL 102 (353)
T ss_dssp CCCEEEECCGGG-----HHHHHHHHHHHGGG-----EEEEECCCCTTCBHHHHHHHHHHHHHTTCSEEEEEES-HHHHHH
T ss_pred CCEEEEEecCch-----hhHHHHHHHHHhhC-----CcEEecCcCCCCcHHHHHHHHHHHhccCCCEEEEeCC-cHHHHH
Confidence 478999988652 23455666666642 2333322 1 1234555556666778999999999 999999
Q ss_pred HHHHHhCCcccccccccccCCceEEEecC
Q 025520 122 VNGFFSAGKLVTNHNRESAHSTALGLIPL 150 (251)
Q Consensus 122 ln~l~~~~~~~~~~~~~~~~~~~lgilP~ 150 (251)
...+.. ...+|+..||.
T Consensus 103 aK~iA~------------~~~~p~i~IPT 119 (353)
T 3hl0_A 103 GKAIAL------------RTDAAQIVIPT 119 (353)
T ss_dssp HHHHHH------------HHCCEEEEEEC
T ss_pred HHHHHh------------ccCCCEEEEeC
Confidence 988763 23678888886
No 12
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=90.86 E-value=1.1 Score=39.96 Aligned_cols=75 Identities=11% Similarity=0.135 Sum_probs=47.6
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEe---cC-CccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL---TS-GPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~---t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
++++||..+.+-.. ...++++...|+.. ++++.++. .. +.+...+.++.+...++|.||.+|| |++.++.
T Consensus 41 ~~~liVtd~~~~~~--~g~~~~v~~~L~~~---g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~A 114 (371)
T 1o2d_A 41 KRALVVTGKSSSKK--NGSLDDLKKLLDET---EISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLGG-GSPMDFA 114 (371)
T ss_dssp SEEEEEEESSGGGT--SSHHHHHHHHHHHT---TCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEES-HHHHHHH
T ss_pred CEEEEEECchHHhh--ccHHHHHHHHHHHc---CCeEEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHH
Confidence 79999998854221 12456677777653 23333332 22 2335555566666678999999998 8888888
Q ss_pred HHHHh
Q 025520 123 NGFFS 127 (251)
Q Consensus 123 n~l~~ 127 (251)
..+..
T Consensus 115 K~iA~ 119 (371)
T 1o2d_A 115 KAVAV 119 (371)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 13
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=90.84 E-value=0.82 Score=41.15 Aligned_cols=85 Identities=13% Similarity=0.141 Sum_probs=50.7
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l 125 (251)
++++||..+..- ....+++...|+. . ..+.+..+..+. .+...+.++.+.+.++|.||.+|| |++.++...+
T Consensus 53 ~r~liVtd~~~~----~~~~~~v~~~L~~-g-~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gs~~D~AK~i 125 (387)
T 3uhj_A 53 KRALVLIDRVLF----DALSERIGKSCGD-S-LDIRFERFGGECCTSEIERVRKVAIEHGSDILVGVGG-GKTADTAKIV 125 (387)
T ss_dssp SEEEEEECTTTH----HHHHHHC-------C-CEEEEEECCSSCSHHHHHHHHHHHHHHTCSEEEEESS-HHHHHHHHHH
T ss_pred CEEEEEECchHH----HHHHHHHHHHHHc-C-CCeEEEEcCCCCCHHHHHHHHHHHhhcCCCEEEEeCC-cHHHHHHHHH
Confidence 799999998652 2244555555654 2 122122222222 234445555555678999999999 9999999887
Q ss_pred HhCCcccccccccccCCceEEEecC
Q 025520 126 FSAGKLVTNHNRESAHSTALGLIPL 150 (251)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~lgilP~ 150 (251)
.. ...+|+..||.
T Consensus 126 A~------------~~~~p~i~IPT 138 (387)
T 3uhj_A 126 AI------------DTGARIVIAPT 138 (387)
T ss_dssp HH------------HTTCEEEECCS
T ss_pred HH------------hcCCCEEEecC
Confidence 53 23688888887
No 14
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=90.46 E-value=1.2 Score=39.70 Aligned_cols=82 Identities=21% Similarity=0.237 Sum_probs=53.4
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCC----ccHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSG----PSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~----~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
.++++||..+.. ....+++...|+.. .+.++.... .+...+.++.+.+.++|.||.+|| |++.++
T Consensus 36 ~~r~liVtd~~~-----~~~~~~v~~~L~~~-----~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~ 104 (358)
T 3jzd_A 36 AKRALVLCTPNQ-----QAEAERIADLLGPL-----SAGVYAGAVMHVPIESARDATARAREAGADCAVAVGG-GSTTGL 104 (358)
T ss_dssp CSCEEEECCGGG-----HHHHHHHHHHHGGG-----EEEEECCCCTTCBHHHHHHHHHHHHHHTCSEEEEEES-HHHHHH
T ss_pred CCeEEEEeCCcH-----HHHHHHHHHHhccC-----CEEEecCCcCCCCHHHHHHHHHHhhccCCCEEEEeCC-cHHHHH
Confidence 478999987742 23455666666642 233332211 234445555666679999999999 999999
Q ss_pred HHHHHhCCcccccccccccCCceEEEecC
Q 025520 122 VNGFFSAGKLVTNHNRESAHSTALGLIPL 150 (251)
Q Consensus 122 ln~l~~~~~~~~~~~~~~~~~~~lgilP~ 150 (251)
...+.. ...+|+..||.
T Consensus 105 aK~iA~------------~~~~p~i~IPT 121 (358)
T 3jzd_A 105 GKAIAL------------ETGMPIVAIPT 121 (358)
T ss_dssp HHHHHH------------HHCCCEEEEEC
T ss_pred HHHHHh------------ccCCCEEEEeC
Confidence 988763 23578888886
No 15
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=89.54 E-value=1.3 Score=39.89 Aligned_cols=98 Identities=14% Similarity=0.175 Sum_probs=57.0
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEec---C-CccHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLT---S-GPSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t---~-~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
.++++||..+.+-. ....++++...|+.. ++++.++.. . +.+...+.++.+...++|.||.+|| |++.++
T Consensus 43 ~~r~liVtd~~~~~--~~g~~~~v~~~L~~~---g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~ 116 (407)
T 1vlj_A 43 IRKVLFLYGGGSIK--KNGVYDQVVDSLKKH---GIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGG-GSVVDS 116 (407)
T ss_dssp CCEEEEEECSSHHH--HSSHHHHHHHHHHHT---TCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEES-HHHHHH
T ss_pred CCeEEEEECchHHh--hccHHHHHHHHHHHc---CCeEEEecCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC-hhHHHH
Confidence 37899998754211 112456677777653 344544432 1 2235555666666779999999998 888888
Q ss_pred HHHHHhCCcccccccc-------cccCCceEEEecC
Q 025520 122 VNGFFSAGKLVTNHNR-------ESAHSTALGLIPL 150 (251)
Q Consensus 122 ln~l~~~~~~~~~~~~-------~~~~~~~lgilP~ 150 (251)
...+...... ...-+ .....+|+..||.
T Consensus 117 AK~iA~~~~~-~~~~~d~~~~~~~~~~~~p~i~IPT 151 (407)
T 1vlj_A 117 AKAVAAGALY-EGDIWDAFIGKYQIEKALPIFDVLT 151 (407)
T ss_dssp HHHHHHHTTC-SSCGGGGGGTSCCCCCCCCEEEEEC
T ss_pred HHHHHHHHhC-CCCHHHHhcccccCCCCCCEEEEeC
Confidence 8777542100 00000 1125678888886
No 16
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=89.20 E-value=1.4 Score=39.12 Aligned_cols=84 Identities=15% Similarity=0.148 Sum_probs=54.5
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccE--EEEecCCc-cHHHHHHHHHHHcCCCEEEEEeCCchHHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNI--CESLTSGP-SHAIDITREAIKEGADAVIAVGGDGTLHEVVN 123 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~--~~~~t~~~-~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln 123 (251)
++++||.++...+ ...+++...|+.. ++++ .++..+.. +...+.++.+.+.++|.||.+|| |++.++..
T Consensus 32 ~~~livtd~~~~~----~~~~~v~~~L~~~---g~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK 103 (370)
T 1jq5_A 32 NKTVVIADEIVWK----IAGHTIVNELKKG---NIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGG-GKTLDTAK 103 (370)
T ss_dssp SEEEEEECHHHHH----HTHHHHHHHHHTT---TCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEES-HHHHHHHH
T ss_pred CeEEEEEChHHHH----HHHHHHHHHHHHc---CCeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHHH
Confidence 7999999875422 2445566667643 2333 22322222 24445555566678999999998 89999988
Q ss_pred HHHhCCcccccccccccCCceEEEecC
Q 025520 124 GFFSAGKLVTNHNRESAHSTALGLIPL 150 (251)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~~~~lgilP~ 150 (251)
.+.. ...+|+..||.
T Consensus 104 ~iA~------------~~~~p~i~IPT 118 (370)
T 1jq5_A 104 AVAD------------ELDAYIVIVPT 118 (370)
T ss_dssp HHHH------------HHTCEEEEEES
T ss_pred HHHH------------hcCCCEEEecc
Confidence 8753 23578888886
No 17
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=88.97 E-value=3.2 Score=36.99 Aligned_cols=100 Identities=16% Similarity=0.142 Sum_probs=57.1
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEe---cC-CccHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL---TS-GPSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~---t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
.++++|+.++...+.. ...++++...|+.. ++++.++. .. +.+...+.++.+.+.++|.||.+|| |++.++
T Consensus 33 ~~~~livtd~~~~~~~-~g~~~~v~~~L~~~---g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~ 107 (387)
T 3bfj_A 33 GKKALLVTDKGLRAIK-DGAVDKTLHYLREA---GIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTVGG-GSPHDC 107 (387)
T ss_dssp CSEEEEECCTTTC--C-CSSHHHHHHHHHHT---TCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEEEES-HHHHHH
T ss_pred CCEEEEEECcchhhcc-chHHHHHHHHHHHc---CCeEEEECCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cchhhH
Confidence 3799999988654320 01455666777653 34444332 11 2234556666666789999999998 888888
Q ss_pred HHHHHhC---Ccccc---cccccccCCceEEEecC
Q 025520 122 VNGFFSA---GKLVT---NHNRESAHSTALGLIPL 150 (251)
Q Consensus 122 ln~l~~~---~~~~~---~~~~~~~~~~~lgilP~ 150 (251)
...+... ..... .........+|+..||.
T Consensus 108 aK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPT 142 (387)
T 3bfj_A 108 GKGIGIAATHEGDLYQYAGIETLTNPLPPIVAVNT 142 (387)
T ss_dssp HHHHHHHHHSSSCSGGGCBSSCCCSCCCCEEEEEC
T ss_pred HHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeC
Confidence 7776531 10000 00001124678888886
No 18
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=88.87 E-value=3.8 Score=36.86 Aligned_cols=88 Identities=17% Similarity=0.149 Sum_probs=56.4
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEE--Eec----CCccHHHHHHHHHHHcCC---CEEEEEeCC
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICE--SLT----SGPSHAIDITREAIKEGA---DAVIAVGGD 115 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~--~~t----~~~~~a~~~~~~~~~~~~---d~ivv~GGD 115 (251)
..++++||.++... ....+++...|+.. ++++.. +.. .+.+...++.+.+.+.++ |.||.+||
T Consensus 61 ~~~rvlIVtd~~v~----~~~~~~v~~~L~~~---g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~R~d~IIAvGG- 132 (390)
T 3okf_A 61 AKQKVVIVTNHTVA----PLYAPAIISLLDHI---GCQHALLELPDGEQYKTLETFNTVMSFLLEHNYSRDVVVIALGG- 132 (390)
T ss_dssp TTCEEEEEEETTTH----HHHHHHHHHHHHHH---TCEEEEEEECSSGGGCBHHHHHHHHHHHHHTTCCTTCEEEEEES-
T ss_pred CCCEEEEEECCcHH----HHHHHHHHHHHHHc---CCeEEEEEECCCcCCchHHHHHHHHHHHHhcCCCcCcEEEEECC-
Confidence 45799999998752 23456677777764 234332 221 123455566666666666 69999988
Q ss_pred chHHHHHHHHHhCCcccccccccccCCceEEEecC
Q 025520 116 GTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPL 150 (251)
Q Consensus 116 GTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~ 150 (251)
|++.++...+.... ...+|+..+|.
T Consensus 133 Gsv~D~ak~~Aa~~----------~rgip~I~IPT 157 (390)
T 3okf_A 133 GVIGDLVGFAAACY----------QRGVDFIQIPT 157 (390)
T ss_dssp HHHHHHHHHHHHHB----------TTCCEEEEEEC
T ss_pred cHHhhHHHHHHHHh----------cCCCCEEEeCC
Confidence 89999888774211 24688888887
No 19
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=88.72 E-value=0.81 Score=40.20 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhh
Q 025520 93 HAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFAR 158 (251)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~ 158 (251)
...++++.+.+.+.|.++++|||||+..+. .|.+ ..+++.-||.==-||+.-
T Consensus 82 ~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~-~L~~-------------~~i~vvgiPkTIDNDl~~ 133 (320)
T 1pfk_A 82 IRAVAIENLKKRGIDALVVIGGDGSYMGAM-RLTE-------------MGFPCIGLPGTIDNDIKG 133 (320)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECHHHHHHHH-HHHH-------------TTCCEEEEEBCTTCCCTT
T ss_pred HHHHHHHHHHHcCCCEEEEECCCchHHHHH-HHHh-------------hCCCEEEEeccccCCCCC
Confidence 445666677788999999999999987654 4542 368899999999999973
No 20
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=88.18 E-value=0.98 Score=40.60 Aligned_cols=97 Identities=15% Similarity=0.132 Sum_probs=60.1
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhc---CCCccEE--EEec----CCccHHHHHHHHHHHcC--C---CEEEE
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRL---SVDCNIC--ESLT----SGPSHAIDITREAIKEG--A---DAVIA 111 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~---~~~~~~~--~~~t----~~~~~a~~~~~~~~~~~--~---d~ivv 111 (251)
.++++||.++... ....+++...|+... ..++++. ++.. .+.+...++.+.+.+.+ + |.||.
T Consensus 36 ~~k~liVtd~~v~----~~~~~~v~~~L~~~~~~~~~g~~~~~~~~~~gE~~k~~~~v~~~~~~~~~~~~~~~r~d~iIa 111 (393)
T 1sg6_A 36 STTYVLVTDTNIG----SIYTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTVVIA 111 (393)
T ss_dssp CSEEEEEEEHHHH----HHHHHHHHHHHHHHHHHSSSCCEEEEEEECSSGGGSSHHHHHHHHHHHHTSSSCCCTTCEEEE
T ss_pred CCeEEEEECCcHH----HHHHHHHHHHHHhhhccccCCceeEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCEEEE
Confidence 4789999986531 223455666665430 0023332 2221 12345556666666667 7 99999
Q ss_pred EeCCchHHHHHHHHHhCCcccccccccccCCceEEEecC--CChhHHh
Q 025520 112 VGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPL--GTGSDFA 157 (251)
Q Consensus 112 ~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~--GTgN~fa 157 (251)
+|| |++.++...+.... ...+|+..||. ||+.|-+
T Consensus 112 lGG-Gsv~D~ak~~Aa~~----------~rgip~i~IPTTlla~~das 148 (393)
T 1sg6_A 112 LGG-GVIGDLTGFVASTY----------MRGVRYVQVPTTLLAMVDSS 148 (393)
T ss_dssp EES-HHHHHHHHHHHHHG----------GGCCEEEEEECSHHHHHTTT
T ss_pred ECC-cHHHHHHHHHHHHh----------cCCCCEEEECCchhhhhhcC
Confidence 998 88888888775311 24689999998 7887763
No 21
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=88.17 E-value=1.1 Score=40.02 Aligned_cols=74 Identities=15% Similarity=0.226 Sum_probs=46.9
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEE---ecC-CccHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICES---LTS-GPSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~---~t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
.++++|+..+.- ......+++...|+.. ++++.++ ..+ +.+...+.++.+.+.++|.||.+|| |++.++
T Consensus 31 ~~~~liVtd~~~---~~~g~~~~v~~~L~~~---gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-Gsv~D~ 103 (383)
T 3ox4_A 31 FKNALIVSDAFM---NKSGVVKQVADLLKAQ---GINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVISLGG-GSPHDC 103 (383)
T ss_dssp CCEEEEEEEHHH---HHTTHHHHHHHHHHTT---TCEEEEEEEECSSCBHHHHHHHHHHHHHHTCSEEEEEES-HHHHHH
T ss_pred CCEEEEEECCch---hhCchHHHHHHHHHHc---CCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCC-cHHHHH
Confidence 478999988642 1112456677777763 3444333 222 2335555566666778999999999 888888
Q ss_pred HHHHH
Q 025520 122 VNGFF 126 (251)
Q Consensus 122 ln~l~ 126 (251)
...+.
T Consensus 104 aK~ia 108 (383)
T 3ox4_A 104 AKAIA 108 (383)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87664
No 22
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=87.87 E-value=1.3 Score=38.98 Aligned_cols=85 Identities=14% Similarity=0.074 Sum_probs=53.0
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEe-cCCc--cHHHHHHHHHHHcCCCEEEEEeCCchHHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL-TSGP--SHAIDITREAIKEGADAVIAVGGDGTLHEVVN 123 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~-t~~~--~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln 123 (251)
++++||.++... ....+++...|+.. ++++.++. ...+ +...++ +.+.+.+.|.||.+|| |++.++..
T Consensus 35 ~~~livtd~~~~----~~~~~~v~~~L~~~---g~~~~~~~~~~~~~~~~v~~~-~~~~~~~~d~IIavGG-Gsv~D~aK 105 (354)
T 3ce9_A 35 KRVSLYFGEGIY----ELFGETIEKSIKSS---NIEIEAVETVKNIDFDEIGTN-AFKIPAEVDALIGIGG-GKAIDAVK 105 (354)
T ss_dssp SEEEEEEETTHH----HHHHHHHHHHHHTT---TCEEEEEEEECCCBHHHHHHH-HTTSCTTCCEEEEEES-HHHHHHHH
T ss_pred CeEEEEECccHH----HHHHHHHHHHHHHc---CCeEEEEecCCCCCHHHHHHH-HHhhhcCCCEEEEECC-hHHHHHHH
Confidence 689999987642 22345566667653 34444333 2222 233344 3344567899999998 89999988
Q ss_pred HHHhCCcccccccccccCCceEEEecCCC
Q 025520 124 GFFSAGKLVTNHNRESAHSTALGLIPLGT 152 (251)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~~~~lgilP~GT 152 (251)
.+.- ...+|+..||.=.
T Consensus 106 ~vA~------------~~~~p~i~IPTT~ 122 (354)
T 3ce9_A 106 YMAF------------LRKLPFISVPTST 122 (354)
T ss_dssp HHHH------------HHTCCEEEEESCC
T ss_pred HHHh------------hcCCCEEEecCcc
Confidence 7752 2368888888633
No 23
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=87.79 E-value=2 Score=38.60 Aligned_cols=73 Identities=11% Similarity=0.130 Sum_probs=44.4
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecC----CccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTS----GPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~----~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
++++||.++.+-. ....++++...|+ ++++.++... +.+...+.++.+.+.++|.||.+|| |++.++.
T Consensus 51 ~r~liVtd~~~~~--~~g~~~~v~~~L~-----g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~A 122 (408)
T 1oj7_A 51 ARVLITYGGGSVK--KTGVLDQVLDALK-----GMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGG-GSVLDGT 122 (408)
T ss_dssp CEEEEEECSSHHH--HHSHHHHHHHHTT-----TSEEEEECCCCSSCBHHHHHHHHHHHHHHTCCEEEEEES-HHHHHHH
T ss_pred CEEEEEECCchhh--hccHHHHHHHHhC-----CCEEEEeCCcCCCcCHHHHHHHHHHHHHcCCCEEEEeCC-chHHHHH
Confidence 7899998765311 0113444444443 3344444322 2234445566666779999999998 8888888
Q ss_pred HHHHh
Q 025520 123 NGFFS 127 (251)
Q Consensus 123 n~l~~ 127 (251)
..+..
T Consensus 123 K~iA~ 127 (408)
T 1oj7_A 123 KFIAA 127 (408)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 24
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=87.55 E-value=6.4 Score=31.29 Aligned_cols=79 Identities=13% Similarity=0.117 Sum_probs=52.0
Q ss_pred CCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEE-ecCCccHHHHHHHHHHHcCCC-EEEEEeCCchHHH
Q 025520 43 SSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICES-LTSGPSHAIDITREAIKEGAD-AVIAVGGDGTLHE 120 (251)
Q Consensus 43 ~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~-~t~~~~~a~~~~~~~~~~~~d-~ivv~GGDGTl~~ 120 (251)
+....++.||.=-.|. ....++....|+.. +..+++.+. .-..++...++++++..++.+ .|.++||.+-|--
T Consensus 9 ~~~~P~V~IimGS~SD----~~v~~~a~~~l~~~-gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpg 83 (173)
T 4grd_A 9 THSAPLVGVLMGSSSD----WDVMKHAVAILQEF-GVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLPG 83 (173)
T ss_dssp CCSSCSEEEEESSGGG----HHHHHHHHHHHHHT-TCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHH
T ss_pred CCCCCeEEEEeCcHhH----HHHHHHHHHHHHHc-CCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccchh
Confidence 3444568888754442 34456666677764 333444442 223456777888888777787 5567899999999
Q ss_pred HHHHHH
Q 025520 121 VVNGFF 126 (251)
Q Consensus 121 vln~l~ 126 (251)
++.++.
T Consensus 84 vvA~~t 89 (173)
T 4grd_A 84 MLAAKT 89 (173)
T ss_dssp HHHHHC
T ss_pred hheecC
Confidence 999984
No 25
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=87.52 E-value=1.2 Score=41.35 Aligned_cols=57 Identities=16% Similarity=0.285 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHh
Q 025520 93 HAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA 157 (251)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa 157 (251)
+..++++.+.+.+.|.++++|||||+..+.. |.+.. ......+++.-||.==-||+.
T Consensus 177 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~A~~-L~e~~-------~~~g~~i~vVGIPkTIDNDl~ 233 (487)
T 2hig_A 177 DPKEMVDTLERLGVNILFTVGGDGTQRGALV-ISQEA-------KRRGVDISVFGVPKTIDNDLS 233 (487)
T ss_dssp CHHHHHHHHHHHTCSEEEEEECHHHHHHHHH-HHHHH-------HHHTCCCEEEEEECCTTSSCC
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCchHHHHHH-HHHHH-------HHhCCCceEEeccccccCCCC
Confidence 3456677777889999999999999875543 32110 011346899999998889986
No 26
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=87.48 E-value=4.1 Score=36.12 Aligned_cols=88 Identities=18% Similarity=0.162 Sum_probs=53.5
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecC----CccHHHHHHHHHHHcC---CCEEEEEeCCchH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTS----GPSHAIDITREAIKEG---ADAVIAVGGDGTL 118 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~----~~~~a~~~~~~~~~~~---~d~ivv~GGDGTl 118 (251)
.++++|+.++... ....+++...|+.. ..+.+.++... +.+...++.+.+.+.+ .|.||.+|| |++
T Consensus 34 ~~k~liVtd~~v~----~~~~~~v~~~L~~~--~~~~~~~~~~ge~~k~~~~v~~~~~~~~~~~~~r~d~iIalGG-Gsv 106 (368)
T 2gru_A 34 FDQYIMISDSGVP----DSIVHYAAEYFGKL--APVHILRFQGGEEYKTLSTVTNLQERAIALGANRRTAIVAVGG-GLT 106 (368)
T ss_dssp CSEEEEEEETTSC----HHHHHHHHHHHTTT--SCEEEEEECCSGGGCSHHHHHHHHHHHHHTTCCTTEEEEEEES-HHH
T ss_pred CCEEEEEECCcHH----HHHHHHHHHHHHhc--cceeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEEECC-hHH
Confidence 4799999998753 22445566666542 12222222221 2224444455555545 689999998 899
Q ss_pred HHHHHHHHhCCcccccccccccCCceEEEecC
Q 025520 119 HEVVNGFFSAGKLVTNHNRESAHSTALGLIPL 150 (251)
Q Consensus 119 ~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~ 150 (251)
.++...+.... ...+|+..||.
T Consensus 107 ~D~ak~~Aa~~----------~rgip~i~IPT 128 (368)
T 2gru_A 107 GNVAGVAAGMM----------FRGIALIHVPT 128 (368)
T ss_dssp HHHHHHHHHHB----------TTCCEEEEEEC
T ss_pred HHHHHHHHHHh----------cCCCCEEEECC
Confidence 99988775311 24688999997
No 27
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=86.47 E-value=0.61 Score=41.00 Aligned_cols=53 Identities=25% Similarity=0.359 Sum_probs=41.0
Q ss_pred cHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhh
Q 025520 92 SHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFAR 158 (251)
Q Consensus 92 ~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~ 158 (251)
++..++++.+.+.+.|.++++|||||+..+.. |.+ ..+++.-||.==-||+.-
T Consensus 80 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~-L~~-------------~~i~vvgiPkTIDNDl~~ 132 (319)
T 1zxx_A 80 EGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQ-LTR-------------HGFNSIGLPGTIDNDIPY 132 (319)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECHHHHHHHHH-HHH-------------TTCCEEEEEEETTCCCTT
T ss_pred HHHHHHHHHHHHhCCCEEEEECCchHHHHHHH-HHH-------------hCCCEEEEeecccCCCCC
Confidence 34556667777889999999999999876544 542 258888999988899873
No 28
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=85.86 E-value=7.8 Score=30.82 Aligned_cols=112 Identities=13% Similarity=0.171 Sum_probs=67.6
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEE-ecCCccHHHHHHHHHHHcCCC-EEEEEeCCchHHHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICES-LTSGPSHAIDITREAIKEGAD-AVIAVGGDGTLHEVVN 123 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~-~t~~~~~a~~~~~~~~~~~~d-~ivv~GGDGTl~~vln 123 (251)
..++.||.=-.|. ....++....|+.. +..+++.+. .-..++...++++++..++.+ .|.++|+.+-|--++.
T Consensus 7 ~~~V~IimgS~SD----~~v~~~a~~~L~~~-gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA 81 (174)
T 3lp6_A 7 RPRVGVIMGSDSD----WPVMADAAAALAEF-DIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGMVA 81 (174)
T ss_dssp CCSEEEEESCGGG----HHHHHHHHHHHHHT-TCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHHHHH
T ss_pred CCeEEEEECcHHh----HHHHHHHHHHHHHc-CCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHHHHH
Confidence 3457777654331 34456666677754 333455442 233467888888888777777 5667899999999999
Q ss_pred HHHhCCcccccccccccCCceEEEecCCChhHHhhhcCCCCCHHHHHHHHHcCceeeeeEEEEE
Q 025520 124 GFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRSWVDVGVIN 187 (251)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~al~~i~~g~~~~iDvg~v~ 187 (251)
++. ..|+.-+|.-+++ ++ . .+++..+++- ..-+.+..++
T Consensus 82 ~~t---------------~~PVIgVP~~~~~-----l~---G-~daLlS~vqm-p~GvpVatV~ 120 (174)
T 3lp6_A 82 AAT---------------PLPVIGVPVPLGR-----LD---G-LDSLLSIVQM-PAGVPVATVS 120 (174)
T ss_dssp HHC---------------SSCEEEEEECCSS-----GG---G-HHHHHHHHCC-CTTCCCEECC
T ss_pred hcc---------------CCCEEEeeCCCCC-----CC---C-HHHHHHHhhC-CCCCeeEEEE
Confidence 984 3565556665543 21 1 2445555553 2234555554
No 29
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=83.79 E-value=1.1 Score=39.19 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHh
Q 025520 93 HAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA 157 (251)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa 157 (251)
+..++++.+.+.+.|.++++|||||+..+ +.|.+ ..+++.-||.==-||+.
T Consensus 81 ~~~~~~~~l~~~~Id~L~~IGGdgS~~~a-~~l~~-------------~~i~vigiPkTIDNDl~ 131 (319)
T 4a3s_A 81 GREKGIANLKKLGIEGLVVIGGDGSYMGA-KKLTE-------------HGFPCVGVPGTIDNDIP 131 (319)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECTTHHHHH-HHHHH-------------TTCCEEEEEEETTCCCT
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcHHHHHH-HHHhc-------------cCCcEEEeeccccCCCC
Confidence 34455666777899999999999998765 44542 46888889988889886
No 30
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=83.66 E-value=1.3 Score=38.92 Aligned_cols=87 Identities=18% Similarity=0.196 Sum_probs=52.1
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecC----CccHHHHHHHHHHHcCC---CEEEEEeCCchH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTS----GPSHAIDITREAIKEGA---DAVIAVGGDGTL 118 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~----~~~~a~~~~~~~~~~~~---d~ivv~GGDGTl 118 (251)
.++++|+.++...+. ..+++...|+.. ...+.++... +.+...++.+.+.+.++ |.||.+|| |++
T Consensus 26 ~~~~livtd~~v~~~----~~~~v~~~L~~~---~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~iIavGG-Gsv 97 (343)
T 3clh_A 26 KQKALIISDSIVAGL----HLPYLLERLKAL---EVRVCVIESGEKYKNFHSLERILNNAFEMQLNRHSLMIALGG-GVI 97 (343)
T ss_dssp SSCEEEEEEHHHHTT----THHHHHTTEECS---CEEEEEECSSGGGCSHHHHHHHHHHHHHTTCCTTCEEEEEES-HHH
T ss_pred CCEEEEEECCcHHHH----HHHHHHHHHHhC---CcEEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCceEEEECC-hHH
Confidence 578999998764321 233333333321 2333333222 23455566666667677 99999998 888
Q ss_pred HHHHHHHHhCCcccccccccccCCceEEEecC
Q 025520 119 HEVVNGFFSAGKLVTNHNRESAHSTALGLIPL 150 (251)
Q Consensus 119 ~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~ 150 (251)
.++...+.... ...+|+..||.
T Consensus 98 ~D~ak~~A~~~----------~rgip~i~IPT 119 (343)
T 3clh_A 98 SDMVGFASSIY----------FRGIDFINIPT 119 (343)
T ss_dssp HHHHHHHHHHB----------TTCCEEEEEEC
T ss_pred HHHHHHHHHHh----------ccCCCEEEeCC
Confidence 88888775211 24688888884
No 31
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=83.48 E-value=8.6 Score=34.21 Aligned_cols=85 Identities=14% Similarity=0.108 Sum_probs=53.2
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEE--ecC----CccHHHHHHHHHHHc---CCCEEEEEeCCch
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICES--LTS----GPSHAIDITREAIKE---GADAVIAVGGDGT 117 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~--~t~----~~~~a~~~~~~~~~~---~~d~ivv~GGDGT 117 (251)
++++|+.++... +.++++...|+.. ++++..+ ... +.+...++.+.+.+. +.|.||.+|| |+
T Consensus 44 ~rvlIVtd~~v~-----~~~~~v~~~L~~~---g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~r~d~IIavGG-Gs 114 (368)
T 3qbe_A 44 HKVAVVHQPGLA-----ETAEEIRKRLAGK---GVDAHRIEIPDAEAGKDLPVVGFIWEVLGRIGIGRKDALVSLGG-GA 114 (368)
T ss_dssp SEEEEEECGGGH-----HHHHHHHHHHHHT---TCEEEEEECCSGGGGGBHHHHHHHHHHHHHHTCCTTCEEEEEES-HH
T ss_pred CEEEEEECccHH-----HHHHHHHHHHHhc---CCcceEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-hH
Confidence 899999998642 2356677777763 2443322 111 123444555555443 4699999998 88
Q ss_pred HHHHHHHHHhCCcccccccccccCCceEEEecC
Q 025520 118 LHEVVNGFFSAGKLVTNHNRESAHSTALGLIPL 150 (251)
Q Consensus 118 l~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~ 150 (251)
+.++...+.... ...+|+..||.
T Consensus 115 v~D~ak~~Aa~~----------~rgip~i~IPT 137 (368)
T 3qbe_A 115 ATDVAGFAAATW----------LRGVSIVHLPT 137 (368)
T ss_dssp HHHHHHHHHHHG----------GGCCEEEEEEC
T ss_pred HHHHHHHHHHHh----------ccCCcEEEECC
Confidence 888888775311 24688888986
No 32
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=83.45 E-value=2.4 Score=37.69 Aligned_cols=75 Identities=13% Similarity=0.062 Sum_probs=47.3
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEe---cC-CccHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL---TS-GPSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~---t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
.++++|+..+...+ ...++++...|+.. ++++.++. .. +.+...+.++.+.+.++|.||.+|| |++.++
T Consensus 31 ~~~~livtd~~~~~---~g~~~~v~~~L~~~---g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~ 103 (386)
T 1rrm_A 31 YQKALIVTDKTLVQ---CGVVAKVTDKMDAA---GLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGG-GSPQDT 103 (386)
T ss_dssp CCEEEEECBHHHHH---TTHHHHHHHHHHHT---TCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEEES-HHHHHH
T ss_pred CCEEEEEECcchhh---chHHHHHHHHHHHc---CCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCC-hHHHHH
Confidence 47889988765311 12456677777653 24443332 11 2235556666666779999999998 888888
Q ss_pred HHHHHh
Q 025520 122 VNGFFS 127 (251)
Q Consensus 122 ln~l~~ 127 (251)
...+..
T Consensus 104 aK~iA~ 109 (386)
T 1rrm_A 104 CKAIGI 109 (386)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776643
No 33
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=82.47 E-value=3.1 Score=38.11 Aligned_cols=83 Identities=11% Similarity=0.102 Sum_probs=49.9
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccE--EEEecCCcc-HHHHHHHHHHHcCCCEEEEEeCCchHHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNI--CESLTSGPS-HAIDITREAIKEGADAVIAVGGDGTLHEVVN 123 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~--~~~~t~~~~-~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln 123 (251)
++++||.++...+ ...+++...|+.. ++++ .++..+... ...+.++.+.+ +.|.||.+|| |++.++..
T Consensus 92 ~rvlIVtd~~~~~----~~~~~v~~~L~~~---gi~~~~~~~~ge~~~~~v~~~~~~~~~-~~D~IIAvGG-GSviD~AK 162 (450)
T 1ta9_A 92 KSAVVLADQNVWN----ICANKIVDSLSQN---GMTVTKLVFGGEASLVELDKLRKQCPD-DTQVIIGVGG-GKTMDSAK 162 (450)
T ss_dssp SEEEEEEEHHHHH----HTHHHHHHHHHHT---TCEEEEEEECSCCCHHHHHHHHTTSCT-TCCEEEEEES-HHHHHHHH
T ss_pred CEEEEEECccHHH----HHHHHHHHHHHHC---CCeEEEEeeCCCCCHHHHHHHHHHHhh-CCCEEEEeCC-cHHHHHHH
Confidence 4888888765422 2445566667653 2333 233332222 23333333334 8899999998 89999888
Q ss_pred HHHhCCcccccccccccCCceEEEecC
Q 025520 124 GFFSAGKLVTNHNRESAHSTALGLIPL 150 (251)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~~~~lgilP~ 150 (251)
.+.. ...+|+..||.
T Consensus 163 ~iA~------------~~giP~I~IPT 177 (450)
T 1ta9_A 163 YIAH------------SMNLPSIICPT 177 (450)
T ss_dssp HHHH------------HTTCCEEEEES
T ss_pred HHHH------------hcCCCEEEEeC
Confidence 8763 23688888886
No 34
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=81.64 E-value=1.3 Score=41.78 Aligned_cols=58 Identities=16% Similarity=0.175 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhh
Q 025520 93 HAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFAR 158 (251)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~ 158 (251)
+..++++.+.+.+.|.+|++|||||+..+.. |.+.. ......+++.-||.==-||+..
T Consensus 154 ~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~-L~e~~-------~~~~~~i~vIGiPkTIDNDl~~ 211 (555)
T 2f48_A 154 HYNKALFVAKENNLNAIIIIGGDDSNTNAAI-LAEYF-------KKNGENIQVIGVPKTIDADLRN 211 (555)
T ss_dssp HHHHHHHHHHHTTCSEEEEEESHHHHHHHHH-HHHHH-------HHTTCCCEEEEEEEETTCCCCC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcHHHHHHH-HHHHH-------HHhCCCCcEEEeccccCCCCCC
Confidence 3445666677789999999999999876543 33210 0123468999999988899963
No 35
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=79.98 E-value=18 Score=29.46 Aligned_cols=77 Identities=12% Similarity=0.011 Sum_probs=46.5
Q ss_pred CCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCchHHH
Q 025520 43 SSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTLHE 120 (251)
Q Consensus 43 ~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~ 120 (251)
+++.+.|.|++...+ ...|..+...+++.+. .++++.+..+.. .....++.+.+...++|.||+.+.|. .+
T Consensus 4 ~~~s~~Igvi~~~~~-----~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~ 76 (276)
T 3jy6_A 4 TQSSKLIAVIVANID-----DYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN--PQ 76 (276)
T ss_dssp -CCCCEEEEEESCTT-----SHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC--HH
T ss_pred CCCCcEEEEEeCCCC-----chHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc--HH
Confidence 567778888885332 2445544444433321 245665555443 23334566677778999999999988 77
Q ss_pred HHHHHH
Q 025520 121 VVNGFF 126 (251)
Q Consensus 121 vln~l~ 126 (251)
.+..+.
T Consensus 77 ~~~~l~ 82 (276)
T 3jy6_A 77 TVQEIL 82 (276)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777775
No 36
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=79.83 E-value=14 Score=29.06 Aligned_cols=74 Identities=14% Similarity=0.180 Sum_probs=46.8
Q ss_pred eEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEE-ecCCccHHHHHHHHHHHcCCC-EEEEEeCCchHHHHHHHH
Q 025520 48 DLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICES-LTSGPSHAIDITREAIKEGAD-AVIAVGGDGTLHEVVNGF 125 (251)
Q Consensus 48 ~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~-~t~~~~~a~~~~~~~~~~~~d-~ivv~GGDGTl~~vln~l 125 (251)
++.||.=-.| -....++....|+.. +..+++.+. .-..++...++++++..++.+ .|.++|+.+-|--++.++
T Consensus 5 ~V~Iimgs~S----D~~v~~~a~~~l~~~-gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~ 79 (163)
T 3ors_A 5 KVAVIMGSSS----DWKIMQESCNMLDYF-EIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGMVASL 79 (163)
T ss_dssp CEEEEESCGG----GHHHHHHHHHHHHHT-TCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHH
T ss_pred eEEEEECcHH----HHHHHHHHHHHHHHc-CCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHhc
Confidence 4666654332 134456666677664 333454442 223456777777777666676 566789999999999998
Q ss_pred H
Q 025520 126 F 126 (251)
Q Consensus 126 ~ 126 (251)
.
T Consensus 80 t 80 (163)
T 3ors_A 80 T 80 (163)
T ss_dssp C
T ss_pred c
Confidence 4
No 37
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=79.46 E-value=4 Score=35.88 Aligned_cols=87 Identities=13% Similarity=0.062 Sum_probs=50.3
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecC----CccHHHHHHHHHHHcCC---CEEEEEeCCchHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTS----GPSHAIDITREAIKEGA---DAVIAVGGDGTLH 119 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~----~~~~a~~~~~~~~~~~~---d~ivv~GGDGTl~ 119 (251)
++++||.++... ....+++...| .. + .+.+.++... +.+...++.+.+.+.++ |.||.+|| |++.
T Consensus 32 ~~~liVtd~~~~----~~~~~~v~~~L-~~-g-~~~~~~~~~~e~~p~~~~v~~~~~~~~~~~~~r~d~iIavGG-Gsv~ 103 (354)
T 1xah_A 32 DQSFLLIDEYVN----QYFANKFDDIL-SY-E-NVHKVIIPAGEKTKTFEQYQETLEYILSHHVTRNTAIIAVGG-GATG 103 (354)
T ss_dssp SCEEEEEEHHHH----HHHHHHHC---------CEEEEEECSGGGGCSHHHHHHHHHHHHTTCCCTTCEEEEEES-HHHH
T ss_pred CeEEEEECCcHH----HHHHHHHHHHH-hc-C-CeEEEEECCCCCCCCHHHHHHHHHHHHHcCCCCCceEEEECC-hHHH
Confidence 789999986431 12334444445 32 1 1333333211 23345555666666677 89999998 8999
Q ss_pred HHHHHHHhCCcccccccccccCCceEEEecCC
Q 025520 120 EVVNGFFSAGKLVTNHNRESAHSTALGLIPLG 151 (251)
Q Consensus 120 ~vln~l~~~~~~~~~~~~~~~~~~~lgilP~G 151 (251)
++...+... ....+|+..||.=
T Consensus 104 D~ak~vA~~----------~~rgip~i~IPTT 125 (354)
T 1xah_A 104 DFAGFVAAT----------LLRGVHFIQVPTT 125 (354)
T ss_dssp HHHHHHHHH----------BTTCCEEEEEECS
T ss_pred HHHHHHHHH----------hccCCCEEEECCc
Confidence 988877531 1346899999973
No 38
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=79.42 E-value=3.4 Score=37.58 Aligned_cols=59 Identities=7% Similarity=0.004 Sum_probs=42.2
Q ss_pred ccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHh
Q 025520 91 PSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA 157 (251)
Q Consensus 91 ~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa 157 (251)
++...++++.+.+.+.|.++++|||||+..+.. |.+.. ......+++.-||.==-||+.
T Consensus 90 ~~~~~~~~~~l~~~~Id~Lv~IGGdgS~~~A~~-L~~~~-------~~~g~~i~vIGiPkTIDNDl~ 148 (419)
T 3hno_A 90 RREYERLIEVFKAHDIGYFFYNGGGDSADTCLK-VSQLS-------GTLGYPIQAIHVPKTVDNDLP 148 (419)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEEESHHHHHHHHH-HHHHH-------HHTTCCCEEEEEECCTTCCCS
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHH-HHHHH-------HHhCCCccEEEecccccCCCc
Confidence 455566777777889999999999999875543 43210 011346889999988889996
No 39
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=78.99 E-value=4.5 Score=39.60 Aligned_cols=63 Identities=21% Similarity=0.342 Sum_probs=40.5
Q ss_pred HHHHHHHHHHcCCCEEEEEeCCchHHHHHH----------HHHhCCcccccccccccCCceEEEecCCChhHHh
Q 025520 94 AIDITREAIKEGADAVIAVGGDGTLHEVVN----------GFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA 157 (251)
Q Consensus 94 a~~~~~~~~~~~~d~ivv~GGDGTl~~vln----------~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa 157 (251)
..++++.+.+.+.|.++++|||||+.-+.. .|.+.++ +..........+++.-||.==-||+.
T Consensus 98 ~~~~~~~l~~~~Id~LvvIGGdgS~~gA~~l~~e~~~ll~eL~~~g~-i~~~~~~~~~~i~vVGIPkTIDNDl~ 170 (762)
T 3o8l_A 98 RLRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLLSDLQKAGK-ITAEEATRSSYLNIVGLVGSIDNDFC 170 (762)
T ss_dssp HHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHTTHHHHHHTTTTTS-CTTTGGGSTTCCEEEEEEBCTTCCCS
T ss_pred HHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHhHHHHHHHHhccc-hhHHHHhcCCCCCeEEeecCcccCCC
Confidence 345666677789999999999999986542 2221110 00001112346888889988889997
No 40
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=78.35 E-value=11 Score=26.22 Aligned_cols=52 Identities=15% Similarity=0.172 Sum_probs=37.8
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHH
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIK 103 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~ 103 (251)
...|++.+|+|-.| ..-.+++..+-++. ++.+.+..++.|++..+-++++.+
T Consensus 49 dngkplvvfvngas-----qndvnefqneakke---gvsydvlkstdpeeltqrvreflk 100 (112)
T 2lnd_A 49 DNGKPLVVFVNGAS-----QNDVNEFQNEAKKE---GVSYDVLKSTDPEELTQRVREFLK 100 (112)
T ss_dssp TCCSCEEEEECSCC-----HHHHHHHHHHHHHH---TCEEEEEECCCHHHHHHHHHHHHH
T ss_pred hcCCeEEEEecCcc-----cccHHHHHHHHHhc---CcchhhhccCCHHHHHHHHHHHHH
Confidence 46689999999765 23345555555553 467788899999999888888764
No 41
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=77.67 E-value=7.1 Score=32.08 Aligned_cols=67 Identities=9% Similarity=-0.032 Sum_probs=33.8
Q ss_pred CCCCCCCeEEEEE-cCCC---CCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEE
Q 025520 41 ASSSRRRDLVFVV-NPRG---ASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAV 112 (251)
Q Consensus 41 ~~~~~~~~i~viv-NP~s---g~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~ 112 (251)
+++..|++++||. .|+- .++......+.+...++.. +.++.++......+..+..+++. ..|.||+.
T Consensus 20 ~~~~~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~---g~ev~~~dL~~~~Dv~~~~~~l~--~aD~iv~~ 90 (218)
T 3rpe_A 20 FQSNAMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRES---GHQVKITTVDQGYDIESEIENYL--WADTIIYQ 90 (218)
T ss_dssp ----CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHT---TCCEEEEEGGGCCCHHHHHHHHH--HCSEEEEE
T ss_pred cccccCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhC---CCEEEEEECCCccCHHHHHHHHH--hCCEEEEE
Confidence 5677888888887 7763 2223344455555566542 34555544443344444444443 36666654
No 42
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=77.32 E-value=17 Score=28.63 Aligned_cols=86 Identities=13% Similarity=0.177 Sum_probs=53.3
Q ss_pred eEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEE-ecCCccHHHHHHHHHHHcCCC-EEEEEeCCchHHHHHHHH
Q 025520 48 DLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICES-LTSGPSHAIDITREAIKEGAD-AVIAVGGDGTLHEVVNGF 125 (251)
Q Consensus 48 ~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~-~t~~~~~a~~~~~~~~~~~~d-~ivv~GGDGTl~~vln~l 125 (251)
++.||.=-.| -....++....|+.. +..+++.+. .-..++...++++++..++.+ .|.++|+.+-|--++.++
T Consensus 7 ~V~IimgS~S----D~~v~~~a~~~l~~~-gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~ 81 (166)
T 3oow_A 7 QVGVIMGSKS----DWSTMKECCDILDNL-GIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGMVAAK 81 (166)
T ss_dssp EEEEEESSGG----GHHHHHHHHHHHHHT-TCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHHHT
T ss_pred eEEEEECcHH----hHHHHHHHHHHHHHc-CCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhHHHHHhc
Confidence 4556554332 134456666677754 333444432 223456777787777666676 566789999999999988
Q ss_pred HhCCcccccccccccCCceEEEecCCCh
Q 025520 126 FSAGKLVTNHNRESAHSTALGLIPLGTG 153 (251)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~lgilP~GTg 153 (251)
. ..|+.-+|.-++
T Consensus 82 t---------------~~PVIgVP~~~~ 94 (166)
T 3oow_A 82 T---------------TLPVLGVPVKSS 94 (166)
T ss_dssp C---------------SSCEEEEECCCT
T ss_pred c---------------CCCEEEeecCcC
Confidence 4 466666676554
No 43
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=75.97 E-value=8.9 Score=33.64 Aligned_cols=84 Identities=14% Similarity=0.077 Sum_probs=51.7
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEec-C---CccHHHHHHHHHHHcCC---CEEEEEeCCchH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLT-S---GPSHAIDITREAIKEGA---DAVIAVGGDGTL 118 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t-~---~~~~a~~~~~~~~~~~~---d~ivv~GGDGTl 118 (251)
.++++|+.++... . ..+++...|+ . .+. .++.. + +.+...++.+.+.+.++ |.||.+|| |++
T Consensus 28 ~~kvliVtd~~v~----~-~~~~v~~~L~--~--~~~-~~~~~ge~~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gsv 96 (348)
T 1ujn_A 28 AGPAALLFDRRVE----G-FAQEVAKALG--V--RHL-LGLPGGEAAKSLEVYGKVLSWLAEKGLPRNATLLVVGG-GTL 96 (348)
T ss_dssp SSCEEEEEEGGGH----H-HHHHHHHHHT--C--CCE-EEECCSGGGSSHHHHHHHHHHHHHHTCCTTCEEEEEES-HHH
T ss_pred CCEEEEEECCcHH----H-HHHHHHHHhc--c--CeE-EEECCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEECC-cHH
Confidence 4789999987532 2 4455555565 1 233 22321 1 22345555555555444 89999988 899
Q ss_pred HHHHHHHHhCCcccccccccccCCceEEEecC
Q 025520 119 HEVVNGFFSAGKLVTNHNRESAHSTALGLIPL 150 (251)
Q Consensus 119 ~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~ 150 (251)
.++...+.... ...+|+..+|.
T Consensus 97 ~D~ak~~A~~~----------~rgip~i~IPT 118 (348)
T 1ujn_A 97 TDLGGFVAATY----------LRGVAYLAFPT 118 (348)
T ss_dssp HHHHHHHHHHB----------TTCCEEEEEEC
T ss_pred HHHHHHHHHHh----------ccCCCEEEecC
Confidence 99888775311 24689999996
No 44
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=74.98 E-value=13 Score=29.46 Aligned_cols=74 Identities=14% Similarity=0.138 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHhhcCCCccEEEE-ecCCccHHHHHHHHHHHcCCC-EEEEEeCCchHHHHHHHHHhCCcccccccccccC
Q 025520 64 KEWKKLLPYLRSRLSVDCNICES-LTSGPSHAIDITREAIKEGAD-AVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAH 141 (251)
Q Consensus 64 ~~~~~i~~~L~~~~~~~~~~~~~-~t~~~~~a~~~~~~~~~~~~d-~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~ 141 (251)
...++....|+.. +..+++.+. .-..++...++++++..++.+ .|.++||.+-|--++.++.
T Consensus 25 ~v~~~a~~~L~~~-Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t--------------- 88 (170)
T 1xmp_A 25 ETMKYACDILDEL-NIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKT--------------- 88 (170)
T ss_dssp HHHHHHHHHHHHT-TCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHTTC---------------
T ss_pred HHHHHHHHHHHHc-CCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHhcc---------------
Confidence 4456666677754 334454443 223466777777776666676 5667899999999999874
Q ss_pred CceEEEecCCCh
Q 025520 142 STALGLIPLGTG 153 (251)
Q Consensus 142 ~~~lgilP~GTg 153 (251)
..|+.-+|.-++
T Consensus 89 ~~PVIgVP~~~~ 100 (170)
T 1xmp_A 89 NLPVIGVPVQSK 100 (170)
T ss_dssp CSCEEEEEECCT
T ss_pred CCCEEEeeCCCC
Confidence 456666666554
No 45
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=74.84 E-value=24 Score=28.20 Aligned_cols=87 Identities=11% Similarity=0.170 Sum_probs=55.3
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEE-ecCCccHHHHHHHHHHHcCCC-EEEEEeCCchHHHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICES-LTSGPSHAIDITREAIKEGAD-AVIAVGGDGTLHEVVNG 124 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~-~t~~~~~a~~~~~~~~~~~~d-~ivv~GGDGTl~~vln~ 124 (251)
.++.||.=-.|. ....++....|+.. +..+++.+. .-..++...++++++..++.+ .|.++||.+-|--++.+
T Consensus 22 ~~V~IimGS~SD----~~v~~~a~~~L~~~-Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~ 96 (182)
T 1u11_A 22 PVVGIIMGSQSD----WETMRHADALLTEL-EIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLPGMCAA 96 (182)
T ss_dssp CSEEEEESSGGG----HHHHHHHHHHHHHT-TCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHH
T ss_pred CEEEEEECcHHH----HHHHHHHHHHHHHc-CCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhHHHHHh
Confidence 357777654431 34456666677754 334454442 223466777777776666676 56678999999999999
Q ss_pred HHhCCcccccccccccCCceEEEecCCCh
Q 025520 125 FFSAGKLVTNHNRESAHSTALGLIPLGTG 153 (251)
Q Consensus 125 l~~~~~~~~~~~~~~~~~~~lgilP~GTg 153 (251)
+. ..|+.-+|.-++
T Consensus 97 ~t---------------~~PVIgVP~~~~ 110 (182)
T 1u11_A 97 WT---------------RLPVLGVPVESR 110 (182)
T ss_dssp HC---------------SSCEEEEEECCT
T ss_pred cc---------------CCCEEEeeCCCC
Confidence 84 456666666544
No 46
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=74.09 E-value=31 Score=28.09 Aligned_cols=81 Identities=10% Similarity=0.044 Sum_probs=46.6
Q ss_pred CCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCch-HHH
Q 025520 43 SSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGT-LHE 120 (251)
Q Consensus 43 ~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGT-l~~ 120 (251)
+.+.+.|.+++.... ..-....++.+...+++. ++++.+..+.. .....+..+.+...++|.||+.+.|.+ ..+
T Consensus 2 s~~~~~Ig~i~~~~~-~~~~~~~~~gi~~~a~~~---g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~ 77 (291)
T 3l49_A 2 SLEGKTIGITAIGTD-HDWDLKAYQAQIAEIERL---GGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNP 77 (291)
T ss_dssp CCTTCEEEEEESCCS-SHHHHHHHHHHHHHHHHT---TCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHH
T ss_pred CCCCcEEEEEeCCCC-ChHHHHHHHHHHHHHHHc---CCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHH
Confidence 456678888876432 111122233344444442 45555554433 233455667777789999999999854 556
Q ss_pred HHHHHHh
Q 025520 121 VVNGFFS 127 (251)
Q Consensus 121 vln~l~~ 127 (251)
.+..+..
T Consensus 78 ~~~~~~~ 84 (291)
T 3l49_A 78 WLQKIND 84 (291)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666653
No 47
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=73.45 E-value=24 Score=28.96 Aligned_cols=78 Identities=15% Similarity=0.193 Sum_probs=42.5
Q ss_pred CCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCchHHH
Q 025520 43 SSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTLHE 120 (251)
Q Consensus 43 ~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~ 120 (251)
+.+.+.+.|++.... ...|..+..-++..+. .++++.+..+.. .....+..+.+...+.|.||+.+.+.+ .+
T Consensus 13 ~~~s~~Igvi~~~~~-----~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~ 86 (289)
T 2fep_A 13 SKKTTTVGVIIPDIS-----SIFYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNIT-DE 86 (289)
T ss_dssp ---CCEEEEEESCTT-----SHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCCC-HH
T ss_pred cCCCCeEEEEeCCCC-----CchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCCC-HH
Confidence 456778999884321 2344444433332221 235554444432 233445667777789999999987755 45
Q ss_pred HHHHHH
Q 025520 121 VVNGFF 126 (251)
Q Consensus 121 vln~l~ 126 (251)
.+..+.
T Consensus 87 ~~~~l~ 92 (289)
T 2fep_A 87 HVAEFK 92 (289)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 556554
No 48
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=73.41 E-value=18 Score=28.98 Aligned_cols=65 Identities=14% Similarity=0.134 Sum_probs=44.4
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l 125 (251)
+++.++-.+.--.+ .+ .+...++ .++..+.-++++++.+..+++.++|+++|| ||++..+.+..+
T Consensus 95 ~kIavvg~~~~~~~-----~~----~~~~ll~--~~i~~~~~~~~~e~~~~i~~l~~~G~~vvV---G~~~~~~~A~~~ 159 (196)
T 2q5c_A 95 NELALIAYKHSIVD-----KH----EIEAMLG--VKIKEFLFSSEDEITTLISKVKTENIKIVV---SGKTVTDEAIKQ 159 (196)
T ss_dssp SEEEEEEESSCSSC-----HH----HHHHHHT--CEEEEEEECSGGGHHHHHHHHHHTTCCEEE---ECHHHHHHHHHT
T ss_pred CcEEEEeCcchhhH-----HH----HHHHHhC--CceEEEEeCCHHHHHHHHHHHHHCCCeEEE---CCHHHHHHHHHc
Confidence 47888877664322 12 2233332 455556667889999999999999999877 577777777654
No 49
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=72.69 E-value=24 Score=28.85 Aligned_cols=80 Identities=10% Similarity=0.054 Sum_probs=43.9
Q ss_pred CCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCchH-H
Q 025520 43 SSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTL-H 119 (251)
Q Consensus 43 ~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTl-~ 119 (251)
+++.+.|.|++...+ ...|..+...++..+. .++++.+..+.. .....+..+.+...++|.||+.+.|... .
T Consensus 5 ~~~~~~Ig~i~~~~~-----~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~ 79 (293)
T 3l6u_A 5 SPKRNIVGFTIVNDK-----HEFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIG 79 (293)
T ss_dssp ----CEEEEEESCSC-----SHHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTH
T ss_pred CCCCcEEEEEEecCC-----cHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHH
Confidence 345677888875432 2344444333332211 245655554443 3334456677778899999999887654 4
Q ss_pred HHHHHHHh
Q 025520 120 EVVNGFFS 127 (251)
Q Consensus 120 ~vln~l~~ 127 (251)
+.+..+..
T Consensus 80 ~~~~~~~~ 87 (293)
T 3l6u_A 80 SAIEEAKK 87 (293)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66776653
No 50
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=72.67 E-value=6.1 Score=39.66 Aligned_cols=58 Identities=10% Similarity=0.108 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHh
Q 025520 93 HAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA 157 (251)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa 157 (251)
+..++++.+.+.+.|.+|++|||||+.. ++.|..... .-....+++.-||.==-||+.
T Consensus 676 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~-a~~L~~~~~------~y~~~~I~vVGIPkTIDNDl~ 733 (989)
T 3opy_A 676 DMGTVAYYFQQYKFDGLIIIGGFEAFTA-LYELDAARA------QYPIFNIPMCCLPATVSNNVP 733 (989)
T ss_dssp GHHHHHHHHHHHTCSEEEEEESHHHHHH-HHHHHHHTT------TCGGGCSCEEEEEBCSSCCCT
T ss_pred hHHHHHHHHHHcCCCEEEEeCCchHHHH-HHHHHHHHh------hCCCcCCcEEeccccccCCCC
Confidence 5667777777889999999999999955 445543210 001236889999998889996
No 51
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=72.50 E-value=2.5 Score=42.36 Aligned_cols=61 Identities=21% Similarity=0.348 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCCCEEEEEeCCchHHHHHHHHH-----------hCCcccccccccccCCceEEEecCCChhHHh
Q 025520 95 IDITREAIKEGADAVIAVGGDGTLHEVVNGFF-----------SAGKLVTNHNRESAHSTALGLIPLGTGSDFA 157 (251)
Q Consensus 95 ~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~-----------~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa 157 (251)
.+.++.+.+.+.|.+|++|||||+.-+.. |. +.+. +..........+++.-||.==-||+.
T Consensus 294 ~~~~~~L~~~gId~LvvIGGDGS~~gA~~-L~~e~~~l~~eL~~~gk-ls~~~~~~~~~i~VVGIPkTIDNDl~ 365 (989)
T 3opy_A 294 LQACYNMVSNGIDALVVCGGDGSLTGADL-FRKEWPELIKELLGEDK-ITKEQYETHRNLTIVGLVGSIDNDMC 365 (989)
T ss_dssp HHHHHHHHHTTCCEEEEEECHHHHHHHHH-HHHHTTCCCCC---------CHHHHHTTSCEEEEEEEESSCCCT
T ss_pred HHHHHHHHHcCCCEEEEeCCChhhHHHHH-HHHHhhHHHHHHHHccc-cchhhhhccCCCcEEEEeecccCCCC
Confidence 45566777889999999999999986542 21 1000 00000011246889999988889987
No 52
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=72.28 E-value=20 Score=29.51 Aligned_cols=77 Identities=16% Similarity=0.148 Sum_probs=42.3
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecCC-ccHHHH---HHHHHHHcCCCEEEEEeCCchH
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSG-PSHAID---ITREAIKEGADAVIAVGGDGTL 118 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~~-~~~a~~---~~~~~~~~~~d~ivv~GGDGTl 118 (251)
++.+.+.+++. ... ...|..+..-++..+. .++++.+..+.. .....+ ..+.+...++|.|++.+.|.+
T Consensus 6 ~~~~~Ig~i~~-~~~----~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~- 79 (290)
T 2rgy_A 6 QQLGIIGLFVP-TFF----GSYYGTILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDLH- 79 (290)
T ss_dssp --CCEEEEECS-CSC----SHHHHHHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC-
T ss_pred CCCCeEEEEeC-CCC----CchHHHHHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecCCCC-
Confidence 45567777763 321 2344444433332221 235555444432 334445 677777789999999998876
Q ss_pred HHHHHHHH
Q 025520 119 HEVVNGFF 126 (251)
Q Consensus 119 ~~vln~l~ 126 (251)
.+.+..+.
T Consensus 80 ~~~~~~l~ 87 (290)
T 2rgy_A 80 DEDLDELH 87 (290)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 45666554
No 53
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=72.00 E-value=17 Score=29.12 Aligned_cols=99 Identities=17% Similarity=0.223 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHhhcCCCccEEEE-ecCCccHHHHHHHHHHHcCCC-EEEEEeCCchHHHHHHHHHhCCcccccccccccC
Q 025520 64 KEWKKLLPYLRSRLSVDCNICES-LTSGPSHAIDITREAIKEGAD-AVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAH 141 (251)
Q Consensus 64 ~~~~~i~~~L~~~~~~~~~~~~~-~t~~~~~a~~~~~~~~~~~~d-~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~ 141 (251)
...++....|+.. +..+++.+. .-..++...++++++..++.+ .|.++||.+-|--++.++.
T Consensus 27 ~v~~~a~~~L~~~-Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t--------------- 90 (183)
T 1o4v_A 27 PVMKQAAEILEEF-GIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGMVASIT--------------- 90 (183)
T ss_dssp HHHHHHHHHHHHT-TCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHc-CCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccHHHHHhcc---------------
Confidence 4456666677754 333444442 233466777777777666676 5667899999999999984
Q ss_pred CceEEEecCCChhHHhhhcCCCCCHHHHHHHHHcCceeeeeEEEEEc
Q 025520 142 STALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRSWVDVGVING 188 (251)
Q Consensus 142 ~~~lgilP~GTgN~fa~~lg~~~~~~~al~~i~~g~~~~iDvg~v~~ 188 (251)
..|+.-+|.-++ .++ . .+++..+++- ..-+.+..++-
T Consensus 91 ~~PVIgVP~~~~-----~l~---G-~dsLlSivqm-P~GvpVatV~I 127 (183)
T 1o4v_A 91 HLPVIGVPVKTS-----TLN---G-LDSLFSIVQM-PGGVPVATVAI 127 (183)
T ss_dssp SSCEEEEEECCT-----TTT---T-HHHHHHHHTC-CTTCCCEECCT
T ss_pred CCCEEEeeCCCC-----CCC---c-HHHHHHHhcC-CCCCeeEEEec
Confidence 466666776554 222 2 3455555554 23344555543
No 54
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=71.83 E-value=20 Score=28.32 Aligned_cols=74 Identities=11% Similarity=0.129 Sum_probs=48.0
Q ss_pred eEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEE-ecCCccHHHHHHHHHHHcCCC-EEEEEeCCchHHHHHHHH
Q 025520 48 DLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICES-LTSGPSHAIDITREAIKEGAD-AVIAVGGDGTLHEVVNGF 125 (251)
Q Consensus 48 ~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~-~t~~~~~a~~~~~~~~~~~~d-~ivv~GGDGTl~~vln~l 125 (251)
++.||.=-.| -....++....|+.. +..+++.+. .-..++...++++++..++.+ .|.++|+.+-|--++.++
T Consensus 8 ~V~IimgS~S----D~~v~~~a~~~l~~~-gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~ 82 (169)
T 3trh_A 8 FVAILMGSDS----DLSTMETAFTELKSL-GIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLAGTIAAH 82 (169)
T ss_dssp EEEEEESCGG----GHHHHHHHHHHHHHT-TCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHHHHHHHT
T ss_pred cEEEEECcHH----hHHHHHHHHHHHHHc-CCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHHHhc
Confidence 4666654332 134456666677754 334554442 223467788888888777776 566789999999999988
Q ss_pred H
Q 025520 126 F 126 (251)
Q Consensus 126 ~ 126 (251)
.
T Consensus 83 t 83 (169)
T 3trh_A 83 T 83 (169)
T ss_dssp C
T ss_pred C
Confidence 4
No 55
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=71.69 E-value=7.6 Score=38.04 Aligned_cols=63 Identities=21% Similarity=0.326 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCCCEEEEEeCCchHHHHH----------HHHHhCCcccccccccccCCceEEEecCCChhHHhh
Q 025520 95 IDITREAIKEGADAVIAVGGDGTLHEVV----------NGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFAR 158 (251)
Q Consensus 95 ~~~~~~~~~~~~d~ivv~GGDGTl~~vl----------n~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~ 158 (251)
...++.+.+.+.|.++++|||||+..+. +.|..... +..........+++.-||.==-||+.-
T Consensus 88 ~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~-is~e~~~~~~~i~vVGiPkTIDNDl~g 160 (766)
T 3o8o_B 88 LLGAQHLIEAGVDALIVCGGDGSLTGADLFRSEWPSLIEELLKTNR-ISNEQYERMKHLNICGTVGSIDNDMST 160 (766)
T ss_dssp HHHHHHHHHHTCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSS-SCHHHHHHTCCCEEEEEEBCTTCCCTT
T ss_pred HHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhccc-ccHHHHhcCCCCcEEEEeccccCCCCC
Confidence 3456667778999999999999998653 23332110 000001123468899999888899974
No 56
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=71.53 E-value=8.7 Score=37.61 Aligned_cols=60 Identities=10% Similarity=0.154 Sum_probs=42.7
Q ss_pred cHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhh
Q 025520 92 SHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFAR 158 (251)
Q Consensus 92 ~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~ 158 (251)
.+..++++.+.+.+.|.+|++|||||+..+.. |.... ..-....+++.-||.==-||+.-
T Consensus 476 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~-L~~~~------~~~~~~~i~vvgiPkTIDNDl~g 535 (762)
T 3o8l_A 476 KSFEQISANITKFNIQGLVIIGGFEAYTGGLE-LMEGR------KQFDELCIPFVVIPATVSNNVPG 535 (762)
T ss_dssp GGHHHHHHHHHHTTCCCEEEEESHHHHHHHHH-HHHHH------HHCSTTCSCEEEEEBCTTCCCTT
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHH-HHHHH------HhccccCCCEEeeccccCCCCCC
Confidence 35667777788889999999999999987643 32110 00012368999999999999973
No 57
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=71.51 E-value=2.4 Score=42.35 Aligned_cols=61 Identities=21% Similarity=0.333 Sum_probs=38.3
Q ss_pred HHHHHHHHcCCCEEEEEeCCchHHHHHHHHHh-----------CCcccccccccccCCceEEEecCCChhHHhh
Q 025520 96 DITREAIKEGADAVIAVGGDGTLHEVVNGFFS-----------AGKLVTNHNRESAHSTALGLIPLGTGSDFAR 158 (251)
Q Consensus 96 ~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~-----------~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~ 158 (251)
+.++.+.+.+.|.+|++|||||+..+.. |.. .+. +..........+++.-||.==-||+.-
T Consensus 267 ~~~~~L~~~gId~LvvIGGDGS~~gA~~-l~~e~~~l~~eL~~~gk-is~e~~~~~~~i~VVGIPkTIDNDl~g 338 (941)
T 3opy_B 267 KACKNMIDMGIDALIVCGGDGSLTGADR-FRSEWPSLIEELLQTEQ-ISQQQFNTHQNLNICGAVGSIDNDMSS 338 (941)
T ss_dssp HHHHHHHHHTCCEEEEEECHHHHHHHHH-HHHTCCCCCCC---------CHHHHHTCSCEEEEEEEESSCCCSS
T ss_pred HHHHHHHHcCCCEEEEeCCChhHHHHHH-HHHhhhHHHHHHHhhcc-ccHHHHhcCCCCcEEEEeecccCCCCC
Confidence 4556677789999999999999986532 211 000 000000112468889999877898874
No 58
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=71.50 E-value=39 Score=27.38 Aligned_cols=78 Identities=6% Similarity=-0.051 Sum_probs=41.9
Q ss_pred CCCCeEEEEEcC--CCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCchHHH
Q 025520 44 SRRRDLVFVVNP--RGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTLHE 120 (251)
Q Consensus 44 ~~~~~i~vivNP--~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~ 120 (251)
.+.++|.+++.- .+ +.-....++.++..+++. ++++.+..+.. +....+..+.+...++|.||+.+.|.+ .+
T Consensus 17 ~~~~~Ig~i~~~~~~~-~~~~~~~~~gi~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~ 91 (296)
T 3brq_A 17 KSTQTLGLVVTNTLYH-GIYFSELLFHAARMAEEK---GRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLS-VD 91 (296)
T ss_dssp --CCEEEEEECGGGCC---CHHHHHHHHHHHHHHT---TCEEEEECCTTSHHHHHHHHHHHHHTTCSEEEEECSSSC-HH
T ss_pred CCCceEEEEeCCcccC-CchHHHHHHHHHHHHHHC---CCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCC-hH
Confidence 455678888743 22 112223333444444442 35555444432 333445667777789999999998755 24
Q ss_pred HHHHHH
Q 025520 121 VVNGFF 126 (251)
Q Consensus 121 vln~l~ 126 (251)
.+..+.
T Consensus 92 ~~~~l~ 97 (296)
T 3brq_A 92 EIDDII 97 (296)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555553
No 59
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=71.04 E-value=5.5 Score=35.33 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=35.1
Q ss_pred cHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecC
Q 025520 92 SHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPL 150 (251)
Q Consensus 92 ~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~ 150 (251)
+...+.++.+.+.++|.||.+|| |++.++...+.. ...+|+..||.
T Consensus 75 ~~v~~~~~~~~~~~~D~IIavGG-Gs~iD~aK~iA~------------~~~~P~i~IPT 120 (364)
T 3iv7_A 75 EVAERARAVATDNEIDLLVCVGG-GSTIGLAKAIAM------------TTALPIVAIPT 120 (364)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEES-HHHHHHHHHHHH------------HHCCCEEEEEC
T ss_pred HHHHHHHHHHHhcCCCEEEEeCC-cHHHHHHHHHHh------------ccCCCEEEEcC
Confidence 34555555666779999999999 999999988753 23678888886
No 60
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=70.75 E-value=3.6 Score=40.38 Aligned_cols=63 Identities=19% Similarity=0.328 Sum_probs=40.4
Q ss_pred HHHHHHHHHcCCCEEEEEeCCchHHHHH----------HHHHhCCcccccccccccCCceEEEecCCChhHHhh
Q 025520 95 IDITREAIKEGADAVIAVGGDGTLHEVV----------NGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFAR 158 (251)
Q Consensus 95 ~~~~~~~~~~~~d~ivv~GGDGTl~~vl----------n~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~ 158 (251)
...++.+.+.+.|.|+++|||||+..+. +.|.+.+. +..........+++.-||.==-||+.-
T Consensus 89 ~~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~-is~e~~~~~~~i~vVGIPkTIDNDl~g 161 (787)
T 3o8o_A 89 RQAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLVDELVAEGR-FTKEEVAPYKNLSIVGLVGSIDNDMSG 161 (787)
T ss_dssp HHHHHHHHHHTEEEEEEEECHHHHHHHHHHHTTHHHHHHHHHSSSS-CCTTTTTTTCSCEEEEEEEESSCCCTT
T ss_pred HHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHhhHHHHHHHHhccc-ccHHHHhcCCCCcEEEEeecCcCCCCC
Confidence 3456667778999999999999998663 22332110 000011223468999999888899874
No 61
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=70.74 E-value=25 Score=29.81 Aligned_cols=67 Identities=10% Similarity=0.089 Sum_probs=39.8
Q ss_pred CCeEEEEEc--CCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCC
Q 025520 46 RRDLVFVVN--PRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGD 115 (251)
Q Consensus 46 ~~~i~vivN--P~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGD 115 (251)
..++.+|+. +...+.-....++-++..++.. ++++....+....+..+..+.+...++|.|++.|..
T Consensus 4 ~~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~---g~~~~~~~~~~~~~~~~~l~~l~~~~~dgIi~~~~~ 72 (318)
T 2fqx_A 4 DFVVGMVTDSGDIDDKSFNQQVWEGISRFAQEN---NAKCKYVTASTDAEYVPSLSAFADENMGLVVACGSF 72 (318)
T ss_dssp CCEEEEEESSSCTTSSSHHHHHHHHHHHHHHHT---TCEEEEEECCSGGGHHHHHHHHHHTTCSEEEEESTT
T ss_pred CcEEEEEEcCCCCCCccHHHHHHHHHHHHHHHh---CCeEEEEeCCCHHHHHHHHHHHHHcCCCEEEECChh
Confidence 467888886 4432122233344444455443 355554555444555566777888899999998754
No 62
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=70.25 E-value=34 Score=28.03 Aligned_cols=75 Identities=8% Similarity=-0.039 Sum_probs=42.7
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCc-cEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCch-HHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDC-NICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGT-LHEVV 122 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~-~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGT-l~~vl 122 (251)
+.|.|++.-.+ ...|..+..-++..+. .++ ++.+..+.. .....+..+.+...++|.||+.+.|.+ ..+.+
T Consensus 3 ~~Igvi~~~~~-----~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~ 77 (309)
T 2fvy_A 3 TRIGVTIYKYD-----DNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVI 77 (309)
T ss_dssp EEEEEEESCTT-----SHHHHHHHHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHH
T ss_pred cEEEEEeccCC-----cHHHHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHH
Confidence 56777764321 2445555444443322 234 554444432 333445667777789999999998876 45667
Q ss_pred HHHH
Q 025520 123 NGFF 126 (251)
Q Consensus 123 n~l~ 126 (251)
..+.
T Consensus 78 ~~~~ 81 (309)
T 2fvy_A 78 EKAR 81 (309)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
No 63
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=70.18 E-value=20 Score=28.48 Aligned_cols=74 Identities=12% Similarity=0.160 Sum_probs=47.4
Q ss_pred eEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEE-ecCCccHHHHHHHHHHHcCCC-EEEEEeCCchHHHHHHHH
Q 025520 48 DLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICES-LTSGPSHAIDITREAIKEGAD-AVIAVGGDGTLHEVVNGF 125 (251)
Q Consensus 48 ~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~-~t~~~~~a~~~~~~~~~~~~d-~ivv~GGDGTl~~vln~l 125 (251)
++.||.=-.| -....++....|+.. +..+++.+. .-..++...++++++..++.+ .|.++|+.+-|--++.++
T Consensus 14 ~V~IimGS~S----D~~v~~~a~~~L~~~-Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~ 88 (174)
T 3kuu_A 14 KIAIVMGSKS----DWATMQFAADVLTTL-NVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGMLAAK 88 (174)
T ss_dssp CEEEEESSGG----GHHHHHHHHHHHHHT-TCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHHHHHT
T ss_pred cEEEEECcHH----HHHHHHHHHHHHHHc-CCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHHHhc
Confidence 4666654333 134456666677754 334454442 223466777777777666776 566789999999999998
Q ss_pred H
Q 025520 126 F 126 (251)
Q Consensus 126 ~ 126 (251)
.
T Consensus 89 t 89 (174)
T 3kuu_A 89 T 89 (174)
T ss_dssp C
T ss_pred c
Confidence 4
No 64
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=69.86 E-value=8 Score=38.71 Aligned_cols=59 Identities=22% Similarity=0.124 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhh
Q 025520 93 HAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFAR 158 (251)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~ 158 (251)
+..++++.+.+.+.|.+|++|||||+..+. .|..... .-....+++.-||.==-||+.-
T Consensus 650 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~a~-~L~~~~~------~~~~~~i~vVGIPkTIDNDl~g 708 (941)
T 3opy_B 650 DIGMIAYFFEKYGFDGLILVGGFEAFISLH-QLERARI------NYPSLRIPLVLIPATISNNVPG 708 (941)
T ss_dssp CHHHHHHHHHHTTCSEEEEEESHHHHHHHH-HHHHGGG------TCGGGCSCEEEEEBCSSCCCTT
T ss_pred hHHHHHHHHHHcCCCEEEEeCCchHHHHHH-HHHHHHH------hcCccCCcEEeeeccccCCCCC
Confidence 455677777788999999999999987543 3432110 0012368999999998999863
No 65
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=69.78 E-value=20 Score=29.44 Aligned_cols=77 Identities=12% Similarity=0.101 Sum_probs=43.3
Q ss_pred CCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCchHHH
Q 025520 43 SSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTLHE 120 (251)
Q Consensus 43 ~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~ 120 (251)
+++.+.|.|++...+ ...|..+...+++.+. .++++.+..+.. .....++.+.+...++|.||+.+-|. ..+
T Consensus 5 ~~~~~~Igvv~~~~~-----~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~ 78 (291)
T 3egc_A 5 SKRSNVVGLIVSDIE-----NVFFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEG-EHD 78 (291)
T ss_dssp --CCCEEEEEESCTT-----SHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS-CCH
T ss_pred cCCCcEEEEEECCCc-----chHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC-ChH
Confidence 346678888885432 2344444433332221 245665555443 33445566777778999999999887 445
Q ss_pred HHHHH
Q 025520 121 VVNGF 125 (251)
Q Consensus 121 vln~l 125 (251)
.+..+
T Consensus 79 ~~~~~ 83 (291)
T 3egc_A 79 YLRTE 83 (291)
T ss_dssp HHHHS
T ss_pred HHHHh
Confidence 55555
No 66
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=69.45 E-value=9.8 Score=37.36 Aligned_cols=58 Identities=16% Similarity=0.186 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHh
Q 025520 93 HAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA 157 (251)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa 157 (251)
+..++++.+.+.+.|.+|++|||||+..+. .|..... .-....+++.-||.==-||+.
T Consensus 471 ~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~-~L~~~~~------~~~~~~i~vIgiPkTIDNDl~ 528 (787)
T 3o8o_A 471 DLGTIAYYFQKNKLDGLIILGGFEGFRSLK-QLRDGRT------QHPIFNIPMCLIPATVSNNVP 528 (787)
T ss_dssp CHHHHHHHHHHTTCSEEEEEESHHHHHHHH-HHHHHTT------TCGGGGSCEEEEEBCTTCCCT
T ss_pred hHHHHHHHHHHhCCCEEEEeCCchHHHHHH-HHHHHHH------hcCccCCceeecccccccCCC
Confidence 455667777788999999999999987654 3432110 001236899999999999997
No 67
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=69.44 E-value=22 Score=28.32 Aligned_cols=80 Identities=13% Similarity=0.127 Sum_probs=47.5
Q ss_pred CCCCCCe-EEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEE-ecCCccHHHHHHHHHHHcCCC-EEEEEeCCchH
Q 025520 42 SSSRRRD-LVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICES-LTSGPSHAIDITREAIKEGAD-AVIAVGGDGTL 118 (251)
Q Consensus 42 ~~~~~~~-i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~-~t~~~~~a~~~~~~~~~~~~d-~ivv~GGDGTl 118 (251)
....+|+ +.||.--.|. ....++....|+.. +..+++.+. .-..++...++++++..++++ .|.++||.+-|
T Consensus 17 ~~~~mkp~V~IimGS~SD----~~v~~~a~~~L~~~-gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahL 91 (181)
T 4b4k_A 17 RGSHMKSLVGVIMGSTSD----WETMKYACDILDEL-NIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHL 91 (181)
T ss_dssp -----CCSEEEEESSGGG----HHHHHHHHHHHHHT-TCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCH
T ss_pred CCCCCCccEEEEECCHhH----HHHHHHHHHHHHHc-CCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccc
Confidence 3445565 5566644331 34456667778764 333444442 223456777778777767777 55678999999
Q ss_pred HHHHHHHH
Q 025520 119 HEVVNGFF 126 (251)
Q Consensus 119 ~~vln~l~ 126 (251)
--++.++.
T Consensus 92 pGvvAa~T 99 (181)
T 4b4k_A 92 PGMVAAKT 99 (181)
T ss_dssp HHHHHTTC
T ss_pred hhhHHhcC
Confidence 99998763
No 68
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=68.90 E-value=23 Score=29.11 Aligned_cols=77 Identities=13% Similarity=0.251 Sum_probs=42.4
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
++.+.+.+++...+ ...|..+..-++..+. .++++.+..+.. +....+..+.+...+.|.||+.+.|.+-.++
T Consensus 18 ~~~~~Ig~i~~~~~-----~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~ 92 (293)
T 2iks_A 18 GRTRSIGLVIPDLE-----NTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHPF 92 (293)
T ss_dssp CCCCEEEEEESCSC-----SHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSCTTCHH
T ss_pred CCCcEEEEEeCCCc-----CcHHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCcHHH
Confidence 45667888874321 2344444433332221 235555444432 2334456677777889999999887653334
Q ss_pred HHHH
Q 025520 122 VNGF 125 (251)
Q Consensus 122 ln~l 125 (251)
+..+
T Consensus 93 ~~~~ 96 (293)
T 2iks_A 93 YQRW 96 (293)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 4444
No 69
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=68.74 E-value=20 Score=29.54 Aligned_cols=77 Identities=13% Similarity=0.104 Sum_probs=43.2
Q ss_pred CCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 43 SSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 43 ~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
+++.+.|.|++ ..+ +.-....++.++..+++. ++++.+..+....+..+..+.+...+.|.||+.+.|.+- +.+
T Consensus 9 ~~~~~~Igvi~-~~~-~~~~~~~~~gi~~~a~~~---g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~~~ 82 (289)
T 3k9c_A 9 QASSRLLGVVF-ELQ-QPFHGDLVEQIYAAATRR---GYDVMLSAVAPSRAEKVAVQALMRERCEAAILLGTRFDT-DEL 82 (289)
T ss_dssp ----CEEEEEE-ETT-CHHHHHHHHHHHHHHHHT---TCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETCCCCH-HHH
T ss_pred cCCCCEEEEEE-ecC-CchHHHHHHHHHHHHHHC---CCEEEEEeCCCCHHHHHHHHHHHhCCCCEEEEECCCCCH-HHH
Confidence 34667899999 332 111122233334444442 456655555544445666777777789999999988765 555
Q ss_pred HHH
Q 025520 123 NGF 125 (251)
Q Consensus 123 n~l 125 (251)
..+
T Consensus 83 ~~~ 85 (289)
T 3k9c_A 83 GAL 85 (289)
T ss_dssp HHH
T ss_pred HHH
Confidence 555
No 70
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=67.98 E-value=47 Score=26.91 Aligned_cols=79 Identities=8% Similarity=0.005 Sum_probs=45.9
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCch----HH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGT----LH 119 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGT----l~ 119 (251)
+.+.|.|++...+. .-....++.++..+++. ++++.+..+.. .....+..+.+...++|.||+.+.|.+ ..
T Consensus 14 ~~~~Igvi~~~~~~-~~~~~~~~gi~~~a~~~---g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~ 89 (298)
T 3tb6_A 14 SNKTIGVLTTYISD-YIFPSIIRGIESYLSEQ---GYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNI 89 (298)
T ss_dssp -CCEEEEEESCSSS-TTHHHHHHHHHHHHHHT---TCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTH
T ss_pred cCceEEEEeCCCCc-hHHHHHHHHHHHHHHHC---CCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccccccCCcH
Confidence 33778888754332 22233344444555543 45655554442 334445667777889999999998863 33
Q ss_pred HHHHHHHh
Q 025520 120 EVVNGFFS 127 (251)
Q Consensus 120 ~vln~l~~ 127 (251)
+.+..+..
T Consensus 90 ~~~~~~~~ 97 (298)
T 3tb6_A 90 GYYLNLEK 97 (298)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 56666653
No 71
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=67.91 E-value=26 Score=28.64 Aligned_cols=82 Identities=12% Similarity=0.089 Sum_probs=44.2
Q ss_pred CCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEec----CCccHHHHHHHHHHHcCCCEEEEEeCCch-
Q 025520 43 SSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLT----SGPSHAIDITREAIKEGADAVIAVGGDGT- 117 (251)
Q Consensus 43 ~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t----~~~~~a~~~~~~~~~~~~d~ivv~GGDGT- 117 (251)
+++.+.|.|++.....+.-....++.++..+++.. ++.+.+..+ .++....+..+.+...++|.||+.+-|..
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~--g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~ 82 (304)
T 3gbv_A 5 SNKKYTFACLLPKHLEGEYWTDVQKGIREAVTTYS--DFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQY 82 (304)
T ss_dssp --CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTG--GGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGGG
T ss_pred cCCcceEEEEecCCCCchHHHHHHHHHHHHHHHHH--hCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChHH
Confidence 34667788777654112111222333334444320 244444332 13333445567777789999999998874
Q ss_pred HHHHHHHHH
Q 025520 118 LHEVVNGFF 126 (251)
Q Consensus 118 l~~vln~l~ 126 (251)
....+..+.
T Consensus 83 ~~~~~~~~~ 91 (304)
T 3gbv_A 83 TKGFTDALN 91 (304)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHHH
Confidence 456677665
No 72
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=67.69 E-value=55 Score=27.58 Aligned_cols=76 Identities=11% Similarity=0.219 Sum_probs=40.5
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecCCc-cHHHHHHHHHHH--cCCCEEEEEeCCchHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSGP-SHAIDITREAIK--EGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~~~-~~a~~~~~~~~~--~~~d~ivv~GGDGTl~~vl 122 (251)
++|.||+ |.... ...|..+..-+++.+. .++++.+..+... ....+.++++.. .++|.||+++.+....+++
T Consensus 4 ~~Ig~i~-p~~~~---~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~ 79 (350)
T 3h75_A 4 TSVVFLN-PGNST---ETFWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQIL 79 (350)
T ss_dssp CEEEEEE-CSCTT---CHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHH
T ss_pred CEEEEEC-CCCCC---ChHHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHHH
Confidence 4555555 44321 1445544443333221 1355554444332 223455667776 4899999997445666777
Q ss_pred HHHH
Q 025520 123 NGFF 126 (251)
Q Consensus 123 n~l~ 126 (251)
..+.
T Consensus 80 ~~~~ 83 (350)
T 3h75_A 80 RLSQ 83 (350)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 7664
No 73
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=67.50 E-value=48 Score=28.01 Aligned_cols=81 Identities=5% Similarity=-0.015 Sum_probs=50.5
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHH
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVN 123 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln 123 (251)
...+++.+|.... ..+....+.+...+++... .+...........+....++++...++|.|++++-|.....++.
T Consensus 139 ~g~~~iaii~~~~---~~g~~~~~~~~~~~~~~G~-~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~ 214 (364)
T 3lop_A 139 IGVTRIGVLYQED---ALGKEAITGVERTLKAHAL-AITAMASYPRNTANVGPAVDKLLAADVQAIFLGATAEPAAQFVR 214 (364)
T ss_dssp TTCCCEEEEEETT---HHHHHHHHHHHHHHHTTTC-CCSEEEEECTTSCCCHHHHHHHHHSCCSEEEEESCHHHHHHHHH
T ss_pred cCCceEEEEEeCc---hhhHHHHHHHHHHHHHcCC-cEEEEEEecCCCccHHHHHHHHHhCCCCEEEEecCcHHHHHHHH
Confidence 3568999998642 1223444555666665421 12222223333445666777777788999999887877888888
Q ss_pred HHHhC
Q 025520 124 GFFSA 128 (251)
Q Consensus 124 ~l~~~ 128 (251)
.+...
T Consensus 215 ~~~~~ 219 (364)
T 3lop_A 215 QYRAR 219 (364)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 88654
No 74
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=67.02 E-value=36 Score=27.96 Aligned_cols=79 Identities=10% Similarity=0.075 Sum_probs=44.1
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEe-cC-CccHHHHHHHHHHHcCCCEEEEEeCCch-HHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL-TS-GPSHAIDITREAIKEGADAVIAVGGDGT-LHEV 121 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~-t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGT-l~~v 121 (251)
+.+++.+|+...+ +.-....++.+...+++. ++++.++. +. +.....+..+.+...++|.||+.+.|.+ +.+.
T Consensus 3 ~~~~I~~i~~~~~-~~~~~~~~~gi~~~a~~~---g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~ 78 (305)
T 3g1w_A 3 LNETYMMITFQSG-MDYWKRCLKGFEDAAQAL---NVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDT 78 (305)
T ss_dssp --CEEEEEESSTT-STHHHHHHHHHHHHHHHH---TCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHH
T ss_pred CCceEEEEEccCC-ChHHHHHHHHHHHHHHHc---CCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHH
Confidence 4567777775443 222223334444445443 35554422 22 2334445567777789999999998876 4566
Q ss_pred HHHHHh
Q 025520 122 VNGFFS 127 (251)
Q Consensus 122 ln~l~~ 127 (251)
+..+..
T Consensus 79 ~~~~~~ 84 (305)
T 3g1w_A 79 INKAVD 84 (305)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776653
No 75
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=65.58 E-value=36 Score=29.81 Aligned_cols=82 Identities=7% Similarity=-0.004 Sum_probs=40.6
Q ss_pred CCCCCCCeEEEEEcCC--CCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCc-cHHHHHHHHHHHcCCCEEEEEeCCch
Q 025520 41 ASSSRRRDLVFVVNPR--GASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGP-SHAIDITREAIKEGADAVIAVGGDGT 117 (251)
Q Consensus 41 ~~~~~~~~i~vivNP~--sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~-~~a~~~~~~~~~~~~d~ivv~GGDGT 117 (251)
..+.+..++.+|+ |. ..++-....|+-++...+.. +..+++....+... .+..+..+++...++|.|++.|..
T Consensus 21 ~~~~~~~kIglv~-~g~i~D~~f~~~~~~G~~~~~~~~-G~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~~g~~-- 96 (356)
T 3s99_A 21 SMAEEKLKVGFIY-IGPPGDFGWTYQHDQARKELVEAL-GDKVETTFLENVAEGADAERSIKRIARAGNKLIFTTSFG-- 96 (356)
T ss_dssp -----CEEEEEEC-SSCGGGSSHHHHHHHHHHHHHHHH-TTTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEECSGG--
T ss_pred cccCCCCEEEEEE-ccCCCchhHHHHHHHHHHHHHHHh-CCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEECCHH--
Confidence 3456667888888 42 11222233344444433332 21244433444332 356677888888899977766532
Q ss_pred HHHHHHHHH
Q 025520 118 LHEVVNGFF 126 (251)
Q Consensus 118 l~~vln~l~ 126 (251)
..+.+..+.
T Consensus 97 ~~~~~~~vA 105 (356)
T 3s99_A 97 YMDPTVKVA 105 (356)
T ss_dssp GHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444444
No 76
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=64.85 E-value=34 Score=29.35 Aligned_cols=78 Identities=13% Similarity=0.133 Sum_probs=50.6
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEE--EEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNIC--ESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~--~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
..+++.+|..... .+....+.+...|++.. .++. ........+....++++...++|.|++++.|.....++
T Consensus 142 g~~~iaii~~~~~---~g~~~~~~~~~~l~~~G---~~v~~~~~~~~~~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~~ 215 (392)
T 3lkb_A 142 KGAKVALVVHPSP---FGRAPVEDARKAARELG---LQIVDVQEVGSGNLDNTALLKRFEQAGVEYVVHQNVAGPVANIL 215 (392)
T ss_dssp TTCEEEEEECSSH---HHHTTHHHHHHHHHHHT---CEEEEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHH
T ss_pred CCCEEEEEEeCCc---hhhhHHHHHHHHHHHcC---CeEEEEEeeCCCCcCHHHHHHHHHhcCCCEEEEecCcchHHHHH
Confidence 5689999985432 23344455666666642 3332 12223334556667777778899999999888888888
Q ss_pred HHHHhC
Q 025520 123 NGFFSA 128 (251)
Q Consensus 123 n~l~~~ 128 (251)
..+...
T Consensus 216 ~~~~~~ 221 (392)
T 3lkb_A 216 KDAKRL 221 (392)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 888654
No 77
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=64.30 E-value=36 Score=28.10 Aligned_cols=76 Identities=8% Similarity=0.042 Sum_probs=48.0
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNG 124 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~ 124 (251)
..+++.+|.+|.. ..+..+.+.++..+++. ++++......+..+..+.++++. .++|.|++ ..|.+.-.++..
T Consensus 132 g~~~I~~i~~~~~--~~~~~r~~g~~~al~~~---gi~~~~~~~~~~~~~~~~~~~l~-~~~dai~~-~~D~~a~g~~~~ 204 (295)
T 3lft_A 132 NVKTIGALYSSSE--DNSKTQVEEFKAYAEKA---GLTVETFAVPSTNEIASTVTVMT-SKVDAIWV-PIDNTIASGFPT 204 (295)
T ss_dssp TCCEEEEEEETTC--HHHHHHHHHHHHHHHHT---TCEEEEEEESSGGGHHHHHHHHT-TTCSEEEE-CSCHHHHHTHHH
T ss_pred CCcEEEEEeCCCC--cchHHHHHHHHHHHHHc---CCEEEEEecCCHHHHHHHHHHHH-hcCCEEEE-CCchhHHHHHHH
Confidence 6789999999853 12344455566666654 34444333334556667777765 46787665 679887777777
Q ss_pred HHh
Q 025520 125 FFS 127 (251)
Q Consensus 125 l~~ 127 (251)
+..
T Consensus 205 l~~ 207 (295)
T 3lft_A 205 VVS 207 (295)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 78
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=64.09 E-value=25 Score=31.22 Aligned_cols=70 Identities=14% Similarity=0.217 Sum_probs=39.9
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEec--CCc--cHHHHHHHHHHHcC---CCEEEEEeCCchHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLT--SGP--SHAIDITREAIKEG---ADAVIAVGGDGTLH 119 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t--~~~--~~a~~~~~~~~~~~---~d~ivv~GGDGTl~ 119 (251)
++++||..+.-.+ .. +...|+. .+.++.++.. ..+ +...+.++.+.+.+ +|.||.+|| |++.
T Consensus 54 ~~~liVtd~~~~~---~~----l~~~L~~---~g~~~~~f~~v~~~pt~~~v~~~~~~~~~~~~~~~D~IIavGG-GS~i 122 (375)
T 3rf7_A 54 DFVVFLVDDVHQH---KP----LAARVPN---KAHDLVIYVNVDDEPTTVQVDELTAQVKAFNTKLPVSVVGLGG-GSTM 122 (375)
T ss_dssp CCEEEEEEGGGTT---SH----HHHHSCC---CTTSEEEEECCSSCCBHHHHHHHHHHHHHHCSSCCSEEEEEES-HHHH
T ss_pred CeEEEEECchhhh---hH----HHHHHHh---cCCeEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCCEEEEeCC-cHHH
Confidence 6788888865321 12 3334432 2334433321 122 23444444454555 999999999 8888
Q ss_pred HHHHHHHh
Q 025520 120 EVVNGFFS 127 (251)
Q Consensus 120 ~vln~l~~ 127 (251)
++...+..
T Consensus 123 D~AK~iA~ 130 (375)
T 3rf7_A 123 DLAKAVSL 130 (375)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877653
No 79
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=63.81 E-value=57 Score=26.36 Aligned_cols=76 Identities=1% Similarity=0.029 Sum_probs=39.2
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecC-CccHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTS-GPSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
++.+.+.+++.-. . ...|..+..-++..+. .++++.+..+. +.....+..+.+...+.|.|++.+.|.+ .+.
T Consensus 5 ~~~~~Ig~i~~~~-~----~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~ 78 (289)
T 1dbq_A 5 NHTKSIGLLATSS-E----AAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYP-EPL 78 (289)
T ss_dssp ---CEEEEEESCT-T----SHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSCCC-HHH
T ss_pred CCCCEEEEEeCCC-C----ChHHHHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHhCCCCEEEEEeccCC-HHH
Confidence 4556777777432 1 2344444433332211 13555444443 2333445667777789999999998864 233
Q ss_pred HHHH
Q 025520 122 VNGF 125 (251)
Q Consensus 122 ln~l 125 (251)
+..+
T Consensus 79 ~~~l 82 (289)
T 1dbq_A 79 LAML 82 (289)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 80
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=63.70 E-value=57 Score=27.41 Aligned_cols=79 Identities=8% Similarity=0.037 Sum_probs=50.4
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEE--EEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNIC--ESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~--~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
..+++.+|.... ..+....+.+...|++. +.++. ........+....++++...++|.|++.+.|.....++
T Consensus 138 g~~~ia~i~~~~---~~g~~~~~~~~~~l~~~---g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~ 211 (368)
T 4eyg_A 138 GIKKVATLTSDY---APGNDALAFFKERFTAG---GGEIVEEIKVPLANPDFAPFLQRMKDAKPDAMFVFVPAGQGGNFM 211 (368)
T ss_dssp TCCEEEEEEESS---HHHHHHHHHHHHHHHHT---TCEEEEEEEECSSSCCCHHHHHHHHHHCCSEEEEECCTTCHHHHH
T ss_pred CCCEEEEEecCc---hHhHHHHHHHHHHHHHc---CCEEEEEEeCCCCCCcHHHHHHHHHhcCCCEEEEeccchHHHHHH
Confidence 578999987322 22233445556666654 23322 22222334556677777777899999988888888999
Q ss_pred HHHHhCC
Q 025520 123 NGFFSAG 129 (251)
Q Consensus 123 n~l~~~~ 129 (251)
+.+...+
T Consensus 212 ~~~~~~g 218 (368)
T 4eyg_A 212 KQFAERG 218 (368)
T ss_dssp HHHHHTT
T ss_pred HHHHHcC
Confidence 9887644
No 81
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=63.28 E-value=33 Score=28.66 Aligned_cols=75 Identities=11% Similarity=0.057 Sum_probs=41.4
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEe-cC-CccHHHHHHHHHHHcCCCEEEEEeCCch-HHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESL-TS-GPSHAIDITREAIKEGADAVIAVGGDGT-LHEVV 122 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~-t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGT-l~~vl 122 (251)
++|.+++ |..+ ..+|..+..-++..+. .++++.+.. +. ++....+.++.+...+.|.||+.+-|.+ +..++
T Consensus 4 ~~Igvi~-~~~~----~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~ 78 (316)
T 1tjy_A 4 ERIAFIP-KLVG----VGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPAL 78 (316)
T ss_dssp CEEEEEC-SSSS----SHHHHHHHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHH
T ss_pred CEEEEEe-CCCC----ChHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHH
Confidence 5677766 3332 2455544443333221 134444322 22 2233345667777889999999998875 35666
Q ss_pred HHHH
Q 025520 123 NGFF 126 (251)
Q Consensus 123 n~l~ 126 (251)
..+.
T Consensus 79 ~~a~ 82 (316)
T 1tjy_A 79 KRAM 82 (316)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6664
No 82
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=63.21 E-value=8.6 Score=37.64 Aligned_cols=58 Identities=21% Similarity=0.157 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHh
Q 025520 93 HAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA 157 (251)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa 157 (251)
+..++++.+.+.+.|.+|++|||||+..+ +.|..... .-....+++.-||.==-||+.
T Consensus 472 ~~~~~~~~l~~~~Id~LvvIGGdgS~~~a-~~L~~~~~------~~~~~~i~vvgiPkTIDNDl~ 529 (766)
T 3o8o_B 472 DLGMIAYYFQKYEFDGLIIVGGFEAFESL-HQLERARE------SYPAFRIPMVLIPATLSNNVP 529 (766)
T ss_dssp CHHHHHHHHHHHTCSEEEEEESHHHHHHH-HHHHTTTT------TCGGGCSCCCEEEBCTTCCCS
T ss_pred hHHHHHHHHHHhCCCEEEEeCCchHHHHH-HHHHHHHH------hcCccCCcEEeeccccccCCC
Confidence 45566777778899999999999998654 44543110 001236888899998899986
No 83
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=62.86 E-value=26 Score=28.32 Aligned_cols=76 Identities=8% Similarity=0.127 Sum_probs=39.9
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
+.+.+.+++.... ...|..+..-++..+. .++++.+..+.. +....+..+.+...+.|.||+.+.|.+ .+.+
T Consensus 2 ~s~~Ig~i~~~~~-----~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~ 75 (275)
T 3d8u_A 2 NAYSIALIIPSLF-----EKACAHFLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHS-QRTH 75 (275)
T ss_dssp --CEEEEEESCSS-----CHHHHHHHHHHHHHHHHTSCEECCEECTTCHHHHHHHHHHHHTSCCCCEEEESSCCC-HHHH
T ss_pred CceEEEEEeCCCc-----cccHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHH
Confidence 4467788874321 2344444433332221 234443333332 333445566777788999999988765 3555
Q ss_pred HHHH
Q 025520 123 NGFF 126 (251)
Q Consensus 123 n~l~ 126 (251)
..+.
T Consensus 76 ~~l~ 79 (275)
T 3d8u_A 76 QLLE 79 (275)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5553
No 84
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=62.78 E-value=48 Score=26.97 Aligned_cols=76 Identities=9% Similarity=0.001 Sum_probs=40.6
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
++.+.+.+++.-.+ ...|..+..-++..+. .++++.+..+.. +....+..+.+...++|.||+.+.|-+ .+.
T Consensus 6 ~~~~~Igvi~~~~~-----~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~ 79 (285)
T 3c3k_A 6 AKTGMLLVMVSNIA-----NPFCAAVVKGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSGKMVDGVITMDALSE-LPE 79 (285)
T ss_dssp -CCCEEEEEESCTT-----SHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHTTCCSEEEECCCGGG-HHH
T ss_pred CCCCEEEEEeCCCC-----CchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHH
Confidence 45667888874321 2344444433332211 235554444432 223345566677778999999987754 344
Q ss_pred HHHH
Q 025520 122 VNGF 125 (251)
Q Consensus 122 ln~l 125 (251)
+..+
T Consensus 80 ~~~l 83 (285)
T 3c3k_A 80 LQNI 83 (285)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 85
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=62.06 E-value=29 Score=27.82 Aligned_cols=77 Identities=9% Similarity=0.096 Sum_probs=44.0
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTLHEVVN 123 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln 123 (251)
.+.|.|++...+ ...|..+...+++.+. .++++.+..+.. .....+..+.+...++|.||+.+.|..-.+.+.
T Consensus 2 s~~Igvi~~~~~-----~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~ 76 (272)
T 3o74_A 2 TRTLGFILPDLE-----NPSYARIAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCLPPEDDSYR 76 (272)
T ss_dssp CCEEEEEESCTT-----CHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHH
T ss_pred ceEEEEEeCCCc-----ChhHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHH
Confidence 467778875432 2344444433332221 245655555443 333445667777789999999988844355666
Q ss_pred HHHh
Q 025520 124 GFFS 127 (251)
Q Consensus 124 ~l~~ 127 (251)
.+..
T Consensus 77 ~~~~ 80 (272)
T 3o74_A 77 ELQD 80 (272)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 86
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=62.01 E-value=42 Score=28.12 Aligned_cols=76 Identities=12% Similarity=0.076 Sum_probs=43.1
Q ss_pred CCCCCeEEEEEcCCCCCCChhhHHHHHH----HHHHhhcCCCccEEEEecCC-ccHHHHHHHHHHHcC--CCEEEEEeCC
Q 025520 43 SSRRRDLVFVVNPRGASGRTGKEWKKLL----PYLRSRLSVDCNICESLTSG-PSHAIDITREAIKEG--ADAVIAVGGD 115 (251)
Q Consensus 43 ~~~~~~i~vivNP~sg~g~~~~~~~~i~----~~L~~~~~~~~~~~~~~t~~-~~~a~~~~~~~~~~~--~d~ivv~GGD 115 (251)
+++.+.|.+++.... ...|..+. ..+++. ++++.+..+.. +....+..+.+...+ +|.||+.+.|
T Consensus 2 ~~~s~~Igvi~~~~~-----~~~~~~~~~gi~~~a~~~---g~~l~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~ 73 (332)
T 2rjo_A 2 SLGQTTLACSFRSLT-----NPYYTAFNKGAQSFAKSV---GLPYVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPND 73 (332)
T ss_dssp -CCCCEEEEEESCTT-----SHHHHHHHHHHHHHHHHH---TCCEEEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCSS
T ss_pred CCCccEEEEEecCCC-----cHHHHHHHHHHHHHHHHc---CCEEEEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCC
Confidence 345677888885322 23444443 344432 35555444432 233345567777778 9999999887
Q ss_pred ch-HHHHHHHHH
Q 025520 116 GT-LHEVVNGFF 126 (251)
Q Consensus 116 GT-l~~vln~l~ 126 (251)
.. +.+.+..+.
T Consensus 74 ~~~~~~~~~~~~ 85 (332)
T 2rjo_A 74 SADARVIVEACS 85 (332)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 64 335566554
No 87
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=61.97 E-value=26 Score=28.47 Aligned_cols=79 Identities=10% Similarity=0.103 Sum_probs=40.4
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecC---CccHHHHHHHHHHHcCCCEEEEEeCCchH-
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTS---GPSHAIDITREAIKEGADAVIAVGGDGTL- 118 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~---~~~~a~~~~~~~~~~~~d~ivv~GGDGTl- 118 (251)
.+.+.|.+++...+. ....|..+..-++..+. .++++.+..+. +.....+..+.+...++|.||+.+.|.+-
T Consensus 3 ~~~~~Ig~v~~~~~~---~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~ 79 (289)
T 3brs_A 3 LKQYYMICIPKVLDD---SSDFWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADYEKT 79 (289)
T ss_dssp --CCEEEEECSCCCS---SSHHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCTTTT
T ss_pred CCCcEEEEEeCCCCC---CchHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHh
Confidence 455677777643210 12444444433332221 13555444332 23344456677777899999999887642
Q ss_pred HHHHHHH
Q 025520 119 HEVVNGF 125 (251)
Q Consensus 119 ~~vln~l 125 (251)
.+.+..+
T Consensus 80 ~~~~~~~ 86 (289)
T 3brs_A 80 YDAAKEI 86 (289)
T ss_dssp HHHHTTT
T ss_pred HHHHHHH
Confidence 2444444
No 88
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=61.80 E-value=49 Score=27.64 Aligned_cols=77 Identities=9% Similarity=0.070 Sum_probs=43.4
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-C-CccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCch-HH
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-V-DCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGT-LH 119 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~-~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGT-l~ 119 (251)
++...|.|++.. ...++..+..-++..+. . ++++.+..+.. +....+.++.+...++|.||+.+.+.+ +.
T Consensus 4 ~~~~~Igvi~~~------~~~~~~~~~~gi~~~a~~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 77 (325)
T 2x7x_A 4 TPHFRIGVAQCS------DDSWRHKMNDEILREAMFYNGVSVEIRSAGDDNSKQAEDVHYFMDEGVDLLIISANEAAPMT 77 (325)
T ss_dssp --CCEEEEEESC------CSHHHHHHHHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSHHHHH
T ss_pred CCCeEEEEEecC------CCHHHHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHH
Confidence 456678887743 12444445444443322 2 45554444432 333445667777789999999988864 34
Q ss_pred HHHHHHH
Q 025520 120 EVVNGFF 126 (251)
Q Consensus 120 ~vln~l~ 126 (251)
+.+..+.
T Consensus 78 ~~~~~~~ 84 (325)
T 2x7x_A 78 PIVEEAY 84 (325)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5666554
No 89
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=61.56 E-value=27 Score=28.60 Aligned_cols=77 Identities=12% Similarity=0.030 Sum_probs=34.9
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEE-ecC-CccHHHHHHHHHHHcCCCEEEEEeCCchHHH
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICES-LTS-GPSHAIDITREAIKEGADAVIAVGGDGTLHE 120 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~-~t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~ 120 (251)
.+.+.|.+++.-.+ ...|..+..-++..+. .++++.+. .+. ++....+..+.+...+.|.||+.+.|.+ .+
T Consensus 6 ~~~~~Ig~i~~~~~-----~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~ 79 (290)
T 3clk_A 6 KSSNVIAAVVSSVR-----TNFAQQILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIERPVMGILLLSIALT-DD 79 (290)
T ss_dssp --CCEEEEECCCCS-----SSHHHHHHHHHHHHHHTTTCEEEEEC----------CHHHHHHSSCCSEEEEESCC-----
T ss_pred ccCCEEEEEeCCCC-----ChHHHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecccCC-HH
Confidence 45567777764221 2344444433333221 23555443 332 2233344566677778999999988765 24
Q ss_pred HHHHHH
Q 025520 121 VVNGFF 126 (251)
Q Consensus 121 vln~l~ 126 (251)
.+..+.
T Consensus 80 ~~~~l~ 85 (290)
T 3clk_A 80 NLQLLQ 85 (290)
T ss_dssp CHHHHH
T ss_pred HHHHHH
Confidence 455553
No 90
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=61.50 E-value=45 Score=27.97 Aligned_cols=80 Identities=5% Similarity=-0.042 Sum_probs=50.2
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNG 124 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~ 124 (251)
..+++.+|.... ..+....+.+...|++... .+...........+....++++...++|.|++++-|.....++..
T Consensus 137 g~~~iaii~~~~---~~~~~~~~~~~~~l~~~g~-~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~ 212 (356)
T 3ipc_A 137 KDAKVAIIHDKT---PYGQGLADETKKAANAAGV-TEVMYEGVNVGDKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQ 212 (356)
T ss_dssp TTCCEEEEECSS---HHHHHHHHHHHHHHHHTTC-CCSEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEEeCCC---hHHHHHHHHHHHHHHHcCC-EEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEccCchHHHHHHHH
Confidence 568899987532 2233445556666766421 121222223334455666777777889999999988888888888
Q ss_pred HHhC
Q 025520 125 FFSA 128 (251)
Q Consensus 125 l~~~ 128 (251)
+.+.
T Consensus 213 ~~~~ 216 (356)
T 3ipc_A 213 AADQ 216 (356)
T ss_dssp HHHH
T ss_pred HHHC
Confidence 8653
No 91
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=61.44 E-value=35 Score=26.61 Aligned_cols=62 Identities=16% Similarity=0.245 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHhhcCCCccEEEE-ecCCccHHHHHHHHHHHc-CCC-EEEEEeCCchHHHHHHHHH
Q 025520 64 KEWKKLLPYLRSRLSVDCNICES-LTSGPSHAIDITREAIKE-GAD-AVIAVGGDGTLHEVVNGFF 126 (251)
Q Consensus 64 ~~~~~i~~~L~~~~~~~~~~~~~-~t~~~~~a~~~~~~~~~~-~~d-~ivv~GGDGTl~~vln~l~ 126 (251)
...++....|+.. +..+++.+. .-..++...++++++..+ +.+ .|.++|+.+-|--++.++.
T Consensus 16 ~v~~~a~~~l~~~-gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~LpgvvA~~t 80 (159)
T 3rg8_A 16 GHAEKIASELKTF-GIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSGFVDGFV 80 (159)
T ss_dssp HHHHHHHHHHHHT-TCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHHHHHHHS
T ss_pred HHHHHHHHHHHHc-CCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhHHHHHhcc
Confidence 4456666677754 333444442 223466777888777654 466 5667799999999999984
No 92
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=61.37 E-value=46 Score=26.98 Aligned_cols=75 Identities=13% Similarity=0.031 Sum_probs=40.0
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCch-HHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGT-LHEVVN 123 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGT-l~~vln 123 (251)
++|.+++. ... ...|..+..-++..+. .++++.+..+.. +....+..+.+...++|.||+.+.|.+ +.+.+.
T Consensus 3 ~~Ig~i~~-~~~----~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~ 77 (290)
T 2fn9_A 3 GKMAIVIS-TLN----NPWFVVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVK 77 (290)
T ss_dssp CEEEEEES-CSS----SHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHH
T ss_pred eEEEEEeC-CCC----ChHHHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHH
Confidence 35666663 321 2344444433332211 235555444432 333445667777789999999887754 345566
Q ss_pred HHH
Q 025520 124 GFF 126 (251)
Q Consensus 124 ~l~ 126 (251)
.+.
T Consensus 78 ~~~ 80 (290)
T 2fn9_A 78 RAK 80 (290)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 93
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=60.84 E-value=20 Score=28.17 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=20.6
Q ss_pred EecCCccHHHHHHHHHHHc-CCCEEEEEeCCc
Q 025520 86 SLTSGPSHAIDITREAIKE-GADAVIAVGGDG 116 (251)
Q Consensus 86 ~~t~~~~~a~~~~~~~~~~-~~d~ivv~GGDG 116 (251)
+..++.+...+..+++..+ ++|+||+.||=|
T Consensus 48 iv~Dd~~~I~~~l~~~~~~~~~DlVittGG~g 79 (178)
T 2pbq_A 48 VIPDERDLIEKTLIELADEKGCSLILTTGGTG 79 (178)
T ss_dssp EECSCHHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred EcCCCHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 4445555555666666553 799999999943
No 94
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=60.78 E-value=30 Score=28.43 Aligned_cols=82 Identities=7% Similarity=0.018 Sum_probs=45.3
Q ss_pred CCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 43 SSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 43 ~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
+++.+.|.|++.... .......|.++..-++..+. .++++.+..+....+..++.+.+...+.|.||+.+.+.+- +.
T Consensus 3 ~~~s~~Igvi~~~~~-~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-~~ 80 (294)
T 3qk7_A 3 LGRTDAIALAYPSRP-RVLNNSTFLEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPED-FR 80 (294)
T ss_dssp --CCCEEEEEEESCS-GGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSC-HH
T ss_pred CCccceEEEEecCCC-ccccChhHHHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCCh-HH
Confidence 346678888885211 11122344444443333221 2456655555544445566666777789999999887543 55
Q ss_pred HHHHH
Q 025520 122 VNGFF 126 (251)
Q Consensus 122 ln~l~ 126 (251)
+..+.
T Consensus 81 ~~~l~ 85 (294)
T 3qk7_A 81 LQYLQ 85 (294)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 95
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=60.11 E-value=17 Score=28.28 Aligned_cols=55 Identities=20% Similarity=0.335 Sum_probs=29.8
Q ss_pred HHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCc-----hHHHHHHHH
Q 025520 69 LLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDG-----TLHEVVNGF 125 (251)
Q Consensus 69 i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDG-----Tl~~vln~l 125 (251)
+...|++.. .......+..++ +...+..+++..+++|+||+.||=| -..+++..+
T Consensus 32 l~~~l~~~G-~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittGG~s~g~~D~t~eal~~~ 91 (164)
T 3pzy_A 32 ITEWLAQQG-FSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSGGTGIAPTDSTPDQTVAV 91 (164)
T ss_dssp HHHHHHHTT-CEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEESCCSSSTTCCHHHHHHTT
T ss_pred HHHHHHHCC-CEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECCCCCCCCCccHHHHHHHH
Confidence 445566542 111111233444 5555555565555799999999855 244555544
No 96
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=59.62 E-value=70 Score=26.04 Aligned_cols=72 Identities=11% Similarity=0.087 Sum_probs=42.6
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHH----HHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchH-HHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLL----PYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTL-HEV 121 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~----~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl-~~v 121 (251)
.+|.+++...+ ...|..+. ..+++. ++++.+..+.+.....+..+.+...++|.||+.+-|... ...
T Consensus 3 ~~Ig~i~~~~~-----~~~~~~~~~gi~~~a~~~---g~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~ 74 (306)
T 8abp_A 3 LKLGFLVKQPE-----EPWFQTEWKFADKAGKDL---GFEVIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAI 74 (306)
T ss_dssp EEEEEEESCTT-----SHHHHHHHHHHHHHHHHH---TEEEEEEECCSHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHH
T ss_pred eEEEEEeCCCC-----chHHHHHHHHHHHHHHHc---CCEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHH
Confidence 35666665322 23444443 444443 355555555444445566777778899999999988753 445
Q ss_pred HHHHH
Q 025520 122 VNGFF 126 (251)
Q Consensus 122 ln~l~ 126 (251)
+..+.
T Consensus 75 ~~~~~ 79 (306)
T 8abp_A 75 VAKAR 79 (306)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66664
No 97
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=59.29 E-value=86 Score=26.97 Aligned_cols=112 Identities=13% Similarity=0.194 Sum_probs=57.7
Q ss_pred CCCCCC-CCeEEEEEcCCC------CCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHc----CCCE
Q 025520 40 AASSSR-RRDLVFVVNPRG------ASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKE----GADA 108 (251)
Q Consensus 40 ~~~~~~-~~~i~vivNP~s------g~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~----~~d~ 108 (251)
++-..+ .+.+.+|+|-.. ....+..-.+.+...|+.. ++++.++.--...+..+.++++.+. ..|.
T Consensus 53 Y~m~~~~~rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~L---GF~V~~~~dlt~~em~~~l~~f~~~~h~~~~D~ 129 (316)
T 2fp3_A 53 YKMQSRFNRGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQEL---NFTIFPYGNVNQDQFFKLLTMVTSSSYVQNTEC 129 (316)
T ss_dssp CCCCCSSCSEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHT---TEEEEEECSCCHHHHHHHHHHHHTSHHHHTCSC
T ss_pred ccCCCCCCCcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHC---CCEEEEccCCCHHHHHHHHHHHHHHhhcCCCCE
Confidence 455555 788888887552 1122233345566677664 4667666555666777777776532 4552
Q ss_pred E--EE-------------EeCCch---HHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhhc
Q 025520 109 V--IA-------------VGGDGT---LHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTF 160 (251)
Q Consensus 109 i--vv-------------~GGDGT---l~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~l 160 (251)
+ ++ .|=||. |.++++.+-... + .....++-|-+|-+--||.+.+..
T Consensus 130 ~vv~ilSHG~~~~g~g~i~g~D~~~v~l~~I~~~f~~~~----C--psL~gKPKlffiQACRG~~~d~g~ 193 (316)
T 2fp3_A 130 FVMVLMTHGNSVEGKEKVEFRDGSVVDMQKIKDHFQTAK----C--PYLVNKPKVLMFPFARGDEYDLGH 193 (316)
T ss_dssp EEEEEESCEECCTTCCEEECTTSCEEEHHHHHHTTSTTT----C--GGGTTSCEEEEESCC---------
T ss_pred EEEEEccCCCccCCCCEEEeecCcEEeHHHHHHHhcccc----C--hhhcCCceEEEEecCCCCcccCCc
Confidence 2 22 233564 566665442110 0 123457889999999999886544
No 98
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=59.28 E-value=74 Score=26.16 Aligned_cols=76 Identities=13% Similarity=0.184 Sum_probs=45.8
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCchH-HHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTL-HEVVNG 124 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTl-~~vln~ 124 (251)
+.|.|++...+. .-....++.+...+++. ++++.+..+.. .....+..+.+...++|.||+.+-|.+- .+.+..
T Consensus 3 ~~Igvi~~~~~~-~~~~~~~~gi~~~a~~~---g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~ 78 (313)
T 3m9w_A 3 VKIGMAIDDLRL-ERWQKDRDIFVKKAESL---GAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKE 78 (313)
T ss_dssp CEEEEEESCCSS-STTHHHHHHHHHHHHHT---SCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHH
T ss_pred cEEEEEeCCCCC-hHHHHHHHHHHHHHHHc---CCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHH
Confidence 466777644332 22234445555555553 45555554432 2334456677778899999999988763 567777
Q ss_pred HH
Q 025520 125 FF 126 (251)
Q Consensus 125 l~ 126 (251)
+.
T Consensus 79 ~~ 80 (313)
T 3m9w_A 79 AK 80 (313)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 99
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=58.52 E-value=39 Score=28.00 Aligned_cols=76 Identities=16% Similarity=0.152 Sum_probs=47.8
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNG 124 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~ 124 (251)
..+++.+|.+|.. ..+..+.+.++..+++. ++++......+..+..+.++++. .++|.|++ ..|.+.-.++..
T Consensus 139 g~~~I~~i~~~~~--~~~~~r~~g~~~al~~~---gi~~~~~~~~~~~~~~~~~~~l~-~~~dai~~-~~D~~a~g~~~~ 211 (302)
T 2qh8_A 139 NVKSIGVVYNPGE--ANAVSLMELLKLSAAKH---GIKLVEATALKSADVQSATQAIA-EKSDVIYA-LIDNTVASAIEG 211 (302)
T ss_dssp TCCEEEEEECTTC--HHHHHHHHHHHHHHHHT---TCEEEEEECSSGGGHHHHHHHHG-GGCSEEEE-CSCHHHHTTHHH
T ss_pred CCcEEEEEecCCC--cchHHHHHHHHHHHHHc---CCEEEEEecCChHHHHHHHHHHh-ccCCEEEE-CCcHhHHHHHHH
Confidence 6889999999853 12344555566666664 34444433344566777777776 46787655 688877666555
Q ss_pred HHh
Q 025520 125 FFS 127 (251)
Q Consensus 125 l~~ 127 (251)
+..
T Consensus 212 l~~ 214 (302)
T 2qh8_A 212 MIV 214 (302)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 100
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=58.40 E-value=62 Score=25.05 Aligned_cols=47 Identities=13% Similarity=0.020 Sum_probs=27.9
Q ss_pred HHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHc-CCCEEEEEeCCc
Q 025520 69 LLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKE-GADAVIAVGGDG 116 (251)
Q Consensus 69 i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~-~~d~ivv~GGDG 116 (251)
+...|++.. .......+..++.+...+..+++..+ ++|+||+.||=|
T Consensus 33 l~~~L~~~G-~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~g 80 (172)
T 1mkz_A 33 LRDSAQEAG-HHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTG 80 (172)
T ss_dssp HHHHHHHTT-CEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCCS
T ss_pred HHHHHHHCC-CeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCCC
Confidence 455666542 22222234455555666666666655 699999999965
No 101
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=58.16 E-value=64 Score=25.10 Aligned_cols=108 Identities=17% Similarity=0.159 Sum_probs=58.7
Q ss_pred CCCCCCCCeEEEEEcCCCC--------CCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHH----cCCC
Q 025520 40 AASSSRRRDLVFVVNPRGA--------SGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIK----EGAD 107 (251)
Q Consensus 40 ~~~~~~~~~i~vivNP~sg--------~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~----~~~d 107 (251)
++-..+++.+.+|+|-..- +..+..-.+.+...|+.. ++++.++.--+..+..+.++++.+ ..+|
T Consensus 26 Y~m~~~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~L---gF~V~~~~dlt~~em~~~l~~~~~~~dh~~~d 102 (167)
T 1pyo_A 26 YRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLL---GYDVHVLCDQTAQEMQEKLQNFAQLPAHRVTD 102 (167)
T ss_dssp CCCCCSSSEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHT---TEEEEEEESCCHHHHHHHHHHHHTCGGGGTSS
T ss_pred ccCCCCCceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHC---CCEEEEeeCCCHHHHHHHHHHhhhhhhccCCC
Confidence 4455667888888876521 111233345566666653 466666665566777777777765 2445
Q ss_pred EEE-----------EEeCCc---hHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHH
Q 025520 108 AVI-----------AVGGDG---TLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDF 156 (251)
Q Consensus 108 ~iv-----------v~GGDG---Tl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~f 156 (251)
.+| +.|=|| .+.++.+.+-... + .....+|-|-+|-+--|+.+
T Consensus 103 c~vv~ilSHG~~g~i~g~D~~~v~l~~i~~~F~~~~----C--psL~gKPKlffiQACRG~~~ 159 (167)
T 1pyo_A 103 SCIVALLSHGVEGAIYGVDGKLLQLQEVFQLFDNAN----C--PSLQNKPKMFFIQACRGDET 159 (167)
T ss_dssp EEEEEEESCEETTEEECTTSCEEEHHHHHHHTSTTT----C--GGGTTSCEEEEEESCSSSBC
T ss_pred EEEEEeCCCCCCCeEEEeCCCEEcHHHHHHHhcccC----C--hhHcCCCeEEEEECCCCCCC
Confidence 332 334466 3555555442210 0 11233566777776666544
No 102
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=57.67 E-value=51 Score=26.50 Aligned_cols=76 Identities=3% Similarity=0.011 Sum_probs=39.8
Q ss_pred CCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCchHHH
Q 025520 43 SSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTLHE 120 (251)
Q Consensus 43 ~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~ 120 (251)
+++.+.|.|++...+ ...|..+..-++..+. .++++.+..+.. .....++.+.+...++|.||+.+.| .+
T Consensus 5 ~~~~~~Ig~i~~~~~-----~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~~---~~ 76 (277)
T 3e61_A 5 KRKSKLIGLLLPDMS-----NPFFTLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTAFN---EN 76 (277)
T ss_dssp -----CEEEEESCTT-----SHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECGGG---HH
T ss_pred cCCCCEEEEEECCCC-----CHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCC---hH
Confidence 345667888875322 2344444433332221 245665555443 3334456677777899999998844 44
Q ss_pred HHH-HHH
Q 025520 121 VVN-GFF 126 (251)
Q Consensus 121 vln-~l~ 126 (251)
.+. .+.
T Consensus 77 ~~~~~l~ 83 (277)
T 3e61_A 77 IIENTLT 83 (277)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 555 554
No 103
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=57.48 E-value=65 Score=24.96 Aligned_cols=108 Identities=16% Similarity=0.146 Sum_probs=58.0
Q ss_pred CCCCCCCCeEEEEEcCC---------------CCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHc
Q 025520 40 AASSSRRRDLVFVVNPR---------------GASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKE 104 (251)
Q Consensus 40 ~~~~~~~~~i~vivNP~---------------sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~ 104 (251)
++-..+++.+.+|+|-. ..+..+..-.+.+...|+.. ++++.++.--+..+..+.++++...
T Consensus 16 Y~m~~~~rG~~LIinn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~L---gF~V~~~~dlt~~em~~~l~~~~~~ 92 (164)
T 1qtn_A 16 YQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEEL---HFEIKPHDDCTVEQIYEILKIYQLM 92 (164)
T ss_dssp CCCCCSSCCEEEEEECCCCHHHHHHCGGGTTCCCCTTHHHHHHHHHHHHHHT---TCEEEEEESCCHHHHHHHHHHHHHS
T ss_pred ccCCCCCceEEEEEechhcCCccccccccccCcCCCCcHHHHHHHHHHHHHC---CCEEEEecCCCHHHHHHHHHHHHHh
Confidence 44455567788888743 22222233345566666653 4667666665667777777777643
Q ss_pred ---CCCEEE-----------EEeCCc---hHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHH
Q 025520 105 ---GADAVI-----------AVGGDG---TLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDF 156 (251)
Q Consensus 105 ---~~d~iv-----------v~GGDG---Tl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~f 156 (251)
.+|.+| +.|=|| .|.++.+.+-... + .....+|-|-+|.+--|+.+
T Consensus 93 dh~~~dc~vv~ilSHG~~g~i~g~D~~~v~i~~i~~~F~~~~----C--psL~gKPKlFfiQACRG~~~ 155 (164)
T 1qtn_A 93 DHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLK----C--PSLAGKPKVFFIQACQGDNY 155 (164)
T ss_dssp CCTTCSCEEEEEESCEETTEEECTTSCEEEHHHHHGGGSTTT----C--GGGTTSCEEEEEESCSSSBC
T ss_pred hccCCCEEEEEeCCCCCCCEEEeeCCCEeeHHHHHHHhcccc----C--hhhcCCCeEEEEECCCCCCc
Confidence 244222 334466 3555555442110 0 11234566777777666554
No 104
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=57.36 E-value=35 Score=28.46 Aligned_cols=68 Identities=15% Similarity=0.188 Sum_probs=36.9
Q ss_pred CCCCeEEEEEc-CCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCc-cHHHHHHHHHHHcCCCEEEEEeC
Q 025520 44 SRRRDLVFVVN-PRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGP-SHAIDITREAIKEGADAVIAVGG 114 (251)
Q Consensus 44 ~~~~~i~vivN-P~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~-~~a~~~~~~~~~~~~d~ivv~GG 114 (251)
.+..++.+|+. +...+.-....++.++..++.. ++++....+... .+..+..+.+...++|.|++.|.
T Consensus 3 ~~~~~Ig~v~~~~~~d~~f~~~~~~gi~~~~~~~---g~~~~~~~~~~~~~~~~~~l~~l~~~~vdgIi~~~~ 72 (296)
T 2hqb_A 3 GGGGMVGLLVEDTIDDQGWNRKAYEGLLNIHSNL---DVDVVLEEGVNSEQKAHRRIKELVDGGVNLIFGHGH 72 (296)
T ss_dssp ---CEEEEECCCC----CCTHHHHHHHHHHHHHS---CCEEEEECCCCSHHHHHHHHHHHHHTTCCEEEECST
T ss_pred CCCcEEEEEECCCCCCCcHHHHHHHHHHHHHHHh---CCeEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEcCH
Confidence 34567888884 3332233345555566565553 355544434332 34445667777889999998864
No 105
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=57.26 E-value=49 Score=27.89 Aligned_cols=79 Identities=9% Similarity=-0.013 Sum_probs=50.2
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEE-ecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICES-LTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVN 123 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~-~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln 123 (251)
..+++.+|+.+.. ..+....+.+...+++. +.++... ......+....++++...++|.|++.+-|.....++.
T Consensus 148 g~~~iaii~~~~~--~~~~~~~~~~~~~~~~~---G~~v~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~ 222 (366)
T 3td9_A 148 GAKRVVVFTDVEQ--DYSVGLSNFFINKFTEL---GGQVKRVFFRSGDQDFSAQLSVAMSFNPDAIYITGYYPEIALISR 222 (366)
T ss_dssp CCCEEEEEEETTC--HHHHHHHHHHHHHHHHT---TCEEEEEEECTTCCCCHHHHHHHHHTCCSEEEECSCHHHHHHHHH
T ss_pred CCcEEEEEEeCCC--cHHHHHHHHHHHHHHHC---CCEEEEEEeCCCCccHHHHHHHHHhcCCCEEEEccchhHHHHHHH
Confidence 6789999975432 12233445556666664 2333211 2333445566777787788999999888888888888
Q ss_pred HHHhC
Q 025520 124 GFFSA 128 (251)
Q Consensus 124 ~l~~~ 128 (251)
.+...
T Consensus 223 ~~~~~ 227 (366)
T 3td9_A 223 QARQL 227 (366)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 88654
No 106
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=57.23 E-value=48 Score=28.11 Aligned_cols=77 Identities=12% Similarity=0.113 Sum_probs=40.8
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
.+.+.|.+|+.... ...|..+..-++..+. .++++.+..+.. .....+..+.+...++|.||+.+.+.+ .+.
T Consensus 64 ~~s~~Igvi~~~~~-----~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~ 137 (348)
T 3bil_A 64 SRSNTIGVIVPSLI-----NHYFAAMVTEIQSTASKAGLATIITNSNEDATTMSGSLEFLTSHGVDGIICVPNEEC-ANQ 137 (348)
T ss_dssp ----CEEEEESCSS-----SHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSCEEECCCGGG-HHH
T ss_pred CCCCEEEEEeCCCC-----CcHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHH
Confidence 35567888874321 2344444433332211 245555544433 233445666777788999999988766 455
Q ss_pred HHHHH
Q 025520 122 VNGFF 126 (251)
Q Consensus 122 ln~l~ 126 (251)
+..+.
T Consensus 138 ~~~l~ 142 (348)
T 3bil_A 138 LEDLQ 142 (348)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 107
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=56.57 E-value=20 Score=29.52 Aligned_cols=65 Identities=12% Similarity=0.148 Sum_probs=43.9
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l 125 (251)
+++.|+-.+.-- ..++ .+...++ .++..+.-.+++++.+.++++.++|+++|| ||++..+.+..+
T Consensus 107 ~kIavVg~~~~~-----~~~~----~i~~ll~--~~i~~~~~~~~ee~~~~i~~l~~~G~~vVV---G~~~~~~~A~~~ 171 (225)
T 2pju_A 107 SSIGVVTYQETI-----PALV----AFQKTFN--LRLDQRSYITEEDARGQINELKANGTEAVV---GAGLITDLAEEA 171 (225)
T ss_dssp SCEEEEEESSCC-----HHHH----HHHHHHT--CCEEEEEESSHHHHHHHHHHHHHTTCCEEE---ESHHHHHHHHHT
T ss_pred CcEEEEeCchhh-----hHHH----HHHHHhC--CceEEEEeCCHHHHHHHHHHHHHCCCCEEE---CCHHHHHHHHHc
Confidence 578888766532 1122 2333332 445556667888999999999999999877 578877777654
No 108
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=56.56 E-value=36 Score=28.46 Aligned_cols=79 Identities=8% Similarity=0.037 Sum_probs=48.8
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEE--EEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNIC--ESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~--~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
..+++.+|.. .. ..+....+.+...|++. +.++. ........+....++++...++|.|++++-|.....++
T Consensus 134 g~~~ia~i~~-~~--~~~~~~~~~~~~~l~~~---g~~v~~~~~~~~~~~~~~~~~~~l~~~~~dav~~~~~~~~a~~~~ 207 (362)
T 3snr_A 134 NVKTVGYIGY-SD--SYGDLWFNDLKKQGEAM---GLKIVGEERFARPDTSVAGQALKLVAANPDAILVGASGTAAALPQ 207 (362)
T ss_dssp TCCEEEEEEE-SS--HHHHHHHHHHHHHHHHT---TCEEEEEEEECTTCSCCHHHHHHHHHHCCSEEEEECCHHHHHHHH
T ss_pred CCCEEEEEec-Cc--hHHHHHHHHHHHHHHHc---CCEEEEEeecCCCCCCHHHHHHHHHhcCCCEEEEecCcchHHHHH
Confidence 5789998853 21 22334455566667664 23322 22222334555666777777899999888788888888
Q ss_pred HHHHhCC
Q 025520 123 NGFFSAG 129 (251)
Q Consensus 123 n~l~~~~ 129 (251)
..+.+.+
T Consensus 208 ~~~~~~g 214 (362)
T 3snr_A 208 TTLRERG 214 (362)
T ss_dssp HHHHHTT
T ss_pred HHHHHcC
Confidence 8886543
No 109
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=56.43 E-value=65 Score=26.92 Aligned_cols=77 Identities=6% Similarity=0.085 Sum_probs=41.3
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
.+.+.+.+++.-.. ...|..+..-++..+. .++++.+..+.. +....+..+.+...+.|.||+.+.+.+ .+.
T Consensus 61 ~~~~~Ig~i~~~~~-----~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~ 134 (332)
T 2o20_A 61 KRTTTVGVILPTIT-----STYFAAITRGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGSSLD-EKI 134 (332)
T ss_dssp -CCCEEEEEESCTT-----CHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECSSCCC-HHH
T ss_pred CCCCEEEEEeCCCC-----CcHHHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHHHhCCCCEEEEeCCCCC-HHH
Confidence 45667888874321 2344444433332211 245554444432 233345667777788999999987654 344
Q ss_pred HHHHH
Q 025520 122 VNGFF 126 (251)
Q Consensus 122 ln~l~ 126 (251)
+..+.
T Consensus 135 ~~~l~ 139 (332)
T 2o20_A 135 RTSLK 139 (332)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55553
No 110
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=56.39 E-value=33 Score=27.21 Aligned_cols=31 Identities=10% Similarity=0.199 Sum_probs=20.8
Q ss_pred EecCCccHHHHHHHHHHH-cCCCEEEEEeCCc
Q 025520 86 SLTSGPSHAIDITREAIK-EGADAVIAVGGDG 116 (251)
Q Consensus 86 ~~t~~~~~a~~~~~~~~~-~~~d~ivv~GGDG 116 (251)
+..++++...+..+++.. .++|+||+.||=|
T Consensus 58 iv~Dd~~~I~~al~~a~~~~~~DlVIttGGtg 89 (189)
T 1jlj_A 58 IVPDEIEEIKETLIDWCDEKELNLILTTGGTG 89 (189)
T ss_dssp EECSCHHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred EeCCCHHHHHHHHHHHhhcCCCCEEEEcCCCC
Confidence 445555555566666554 3799999999954
No 111
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=56.23 E-value=63 Score=26.41 Aligned_cols=72 Identities=14% Similarity=0.096 Sum_probs=44.4
Q ss_pred CCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCch
Q 025520 43 SSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGT 117 (251)
Q Consensus 43 ~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGT 117 (251)
+++.+.|.|++.......-....++.+...+++. ++++.+..+.. .....++.+.+...+.|.||+.+.+..
T Consensus 10 ~~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~---g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~ 82 (301)
T 3miz_A 10 SSRSNTFGIITDYVSTTPYSVDIVRGIQDWANAN---GKTILIANTGGSSEREVEIWKMFQSHRIDGVLYVTMYRR 82 (301)
T ss_dssp --CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHT---TCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEEEEE
T ss_pred hCCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHC---CCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEecCCcc
Confidence 4456788888865543332225566666666664 46665555443 334456667777789999999987754
No 112
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=55.96 E-value=32 Score=27.11 Aligned_cols=46 Identities=26% Similarity=0.454 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHcCCCEEEEEeC-CchHHHHHHHHHhCCcccccccccccCCceEEEecCC
Q 025520 93 HAIDITREAIKEGADAVIAVGG-DGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLG 151 (251)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GG-DGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~G 151 (251)
.+.++++.+.+.++ .||..|| -|--..+..+.++.+ ...+|+||-.
T Consensus 33 ~A~~lg~~La~~g~-~lVsGGg~~Gim~aa~~gAl~~g------------G~tigVlP~~ 79 (176)
T 2iz6_A 33 MANELGKQIATHGW-ILLTGGRSLGVMHEAMKGAKEAG------------GTTIGVLPGP 79 (176)
T ss_dssp HHHHHHHHHHHTTC-EEEEECSSSSHHHHHHHHHHHTT------------CCEEEEECC-
T ss_pred HHHHHHHHHHHCCC-EEEECCCccCHhHHHHHHHHHcC------------CEEEEEeCch
Confidence 44555666666554 5556666 788888888887643 4789999865
No 113
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=55.51 E-value=1e+02 Score=27.84 Aligned_cols=75 Identities=17% Similarity=0.244 Sum_probs=50.5
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEE-ecCCccHHHHHHHHHHHcCCC--EEEEEeCCchHHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICES-LTSGPSHAIDITREAIKEGAD--AVIAVGGDGTLHEVVN 123 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~-~t~~~~~a~~~~~~~~~~~~d--~ivv~GGDGTl~~vln 123 (251)
.++.||.--.|. ....++....|+.. +..+++.+. .-..++...++++++..++.. .|.++||.|.|--++.
T Consensus 266 ~~V~Ii~gs~SD----~~~~~~a~~~l~~~-gi~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~Lpgvva 340 (425)
T 2h31_A 266 CRVVVLMGSTSD----LGHCEKIKKACGNF-GIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLGPVMS 340 (425)
T ss_dssp CEEEEEESCGGG----HHHHHHHHHHHHHT-TCCEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCCHHHHHH
T ss_pred CeEEEEecCccc----HHHHHHHHHHHHHc-CCceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccchHhHHh
Confidence 467777654431 34456666677754 334455443 233567788888888777784 6778899999999999
Q ss_pred HHH
Q 025520 124 GFF 126 (251)
Q Consensus 124 ~l~ 126 (251)
++.
T Consensus 341 ~~t 343 (425)
T 2h31_A 341 GNT 343 (425)
T ss_dssp HHC
T ss_pred ccC
Confidence 984
No 114
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=53.31 E-value=50 Score=26.90 Aligned_cols=78 Identities=5% Similarity=-0.144 Sum_probs=41.1
Q ss_pred CCCeEEEEEcC-CC--CCCChhhHHHHHHHHHHhhcCCCccEEEEecC-CccHHHHHHHHHHHcCCCEEEEEeCCchHHH
Q 025520 45 RRRDLVFVVNP-RG--ASGRTGKEWKKLLPYLRSRLSVDCNICESLTS-GPSHAIDITREAIKEGADAVIAVGGDGTLHE 120 (251)
Q Consensus 45 ~~~~i~vivNP-~s--g~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~ 120 (251)
+.+.|.+++.. .. .+.-....++.+...+++. ++++.+..+. +.....++.+.+...++|.||+.+.|.+ .+
T Consensus 3 ~s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~---g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~ 78 (287)
T 3bbl_A 3 LSFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAV---NYFVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSINYN-DP 78 (287)
T ss_dssp CCCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHT---TCEEEECCCCSSTTCCHHHHHHHHTTCCSEEEECSCCTT-CH
T ss_pred ceeEEEEEecccccccCChhHHHHHHHHHHHHHHc---CCEEEEEeCCCchHHHHHHHHHHHcCCCCEEEEeecCCC-cH
Confidence 45677777643 21 1112223333344444442 3555443332 2233445667777778999999987654 24
Q ss_pred HHHHHH
Q 025520 121 VVNGFF 126 (251)
Q Consensus 121 vln~l~ 126 (251)
.+..+.
T Consensus 79 ~~~~l~ 84 (287)
T 3bbl_A 79 RVQFLL 84 (287)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 115
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=53.29 E-value=41 Score=28.86 Aligned_cols=78 Identities=8% Similarity=-0.033 Sum_probs=44.7
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEE--EecCCccHHHHHHHH--HHHcCCCEEEEEeCCchHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICE--SLTSGPSHAIDITRE--AIKEGADAVIAVGGDGTLHE 120 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~--~~t~~~~~a~~~~~~--~~~~~~d~ivv~GGDGTl~~ 120 (251)
..+++.+|..+.. ..+....+.+...+++. +.++.. .......+....+.+ +...++|.|++.+-......
T Consensus 140 g~~~iaii~~~~~--~~g~~~~~~~~~~l~~~---G~~v~~~~~~~~~~~d~~~~~~~~~l~~~~~dav~~~~~~~~~~~ 214 (391)
T 3eaf_A 140 GQGKLALAYDSKV--AYSRSPIGAIKKAAPSL---GLQVVGDYDLPLRATEADAERIAREMLAADPDYVWCGNTISSCSL 214 (391)
T ss_dssp CSEEEEEEECTTC--HHHHTTHHHHHHHTGGG---TEEEEEEEECCTTCCHHHHHHHHHHHHTTCCSEEEECSCHHHHHH
T ss_pred CCCEEEEEEecCC--hhHHHHHHHHHHHHHHc---CCceeeeeccCCCCcCHHHHHHHHHHHHcCCCEEEEecCcHHHHH
Confidence 5789999987522 22334444455555553 233322 223334466777777 77778898766544345556
Q ss_pred HHHHHHh
Q 025520 121 VVNGFFS 127 (251)
Q Consensus 121 vln~l~~ 127 (251)
++..+..
T Consensus 215 ~~~~~~~ 221 (391)
T 3eaf_A 215 LGRAMAK 221 (391)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
No 116
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=52.58 E-value=43 Score=27.32 Aligned_cols=78 Identities=14% Similarity=0.081 Sum_probs=43.5
Q ss_pred CCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecCC---ccHHHHHHHHHHHcCCCEEEEEeCCch-
Q 025520 43 SSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSG---PSHAIDITREAIKEGADAVIAVGGDGT- 117 (251)
Q Consensus 43 ~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~~---~~~a~~~~~~~~~~~~d~ivv~GGDGT- 117 (251)
+++.++|.|++.-.+ ...|..+..-++..+. .++++.+..+.. .....+.++.+...+.|.||+.+.|..
T Consensus 2 s~~~~~Igvi~~~~~-----~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~ 76 (304)
T 3o1i_D 2 SGSDEKICAIYPHLK-----DSYWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHA 76 (304)
T ss_dssp ---CCEEEEEESCSC-----SHHHHHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTS
T ss_pred CCCCcEEEEEeCCCC-----CcHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhH
Confidence 456788888886432 2445444433332221 135565555543 334455667777789999999988765
Q ss_pred HHHHHHHH
Q 025520 118 LHEVVNGF 125 (251)
Q Consensus 118 l~~vln~l 125 (251)
+.+.+..+
T Consensus 77 ~~~~~~~~ 84 (304)
T 3o1i_D 77 YEHNLKSW 84 (304)
T ss_dssp STTTHHHH
T ss_pred HHHHHHHH
Confidence 23344544
No 117
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=52.56 E-value=48 Score=28.21 Aligned_cols=81 Identities=9% Similarity=0.016 Sum_probs=47.3
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCcc--HHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPS--HAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~--~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
.+.+.|.||+............|..+..-+...+. ++.+.++.+.... ...++.+.+...+.|.||+++-+.+ .+.
T Consensus 66 ~~s~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~-g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~-~~~ 143 (366)
T 3h5t_A 66 RRAGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAG-DTQLTLIPASPASSVDHVSAQQLVNNAAVDGVVIYSVAKG-DPH 143 (366)
T ss_dssp --CCEEEEEESSCTTHHHHSHHHHHHHHHHHHHSS-SCEEEEEECCCCTTCCHHHHHHHHHTCCCSCEEEESCCTT-CHH
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHh-hCCEEEEEcCCCccHHHHHHHHHHHhCCCCEEEEecCCCC-hHH
Confidence 45677888886532211123456667776766654 5666655544322 3556677777788999999876433 244
Q ss_pred HHHHH
Q 025520 122 VNGFF 126 (251)
Q Consensus 122 ln~l~ 126 (251)
+..+.
T Consensus 144 ~~~l~ 148 (366)
T 3h5t_A 144 IDAIR 148 (366)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55453
No 118
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=52.44 E-value=66 Score=26.29 Aligned_cols=47 Identities=4% Similarity=0.015 Sum_probs=30.5
Q ss_pred CccEEEEecC---CccHHHHHHHHHHHcCCCEEEEEeCCch-HHHHHHHHH
Q 025520 80 DCNICESLTS---GPSHAIDITREAIKEGADAVIAVGGDGT-LHEVVNGFF 126 (251)
Q Consensus 80 ~~~~~~~~t~---~~~~a~~~~~~~~~~~~d~ivv~GGDGT-l~~vln~l~ 126 (251)
++++.+..+. ++....+..+.+...+.|.||+.+-|.+ +...+..+.
T Consensus 33 g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~ 83 (297)
T 3rot_A 33 KVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQRAN 83 (297)
T ss_dssp TCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHHHHH
T ss_pred CcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHH
Confidence 3555555544 3444556677777889999999888765 345566554
No 119
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=52.34 E-value=27 Score=27.98 Aligned_cols=45 Identities=20% Similarity=0.253 Sum_probs=29.3
Q ss_pred HHHHHHHHHHcCCCEEEEEeCC-chHHHHHHHHHhCCcccccccccccCCceEEEecCC
Q 025520 94 AIDITREAIKEGADAVIAVGGD-GTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLG 151 (251)
Q Consensus 94 a~~~~~~~~~~~~d~ivv~GGD-GTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~G 151 (251)
|.++.+.+.+.++ .||..||. |-...+..+..+.+ ...+|++|--
T Consensus 33 A~~lg~~la~~g~-~lv~GGG~~GlM~a~~~ga~~~G------------G~viGv~p~~ 78 (189)
T 3sbx_A 33 AGAVGAAIAARGW-TLVWGGGHVSAMGAVSSAARAHG------------GWTVGVIPKM 78 (189)
T ss_dssp HHHHHHHHHHTTC-EEEECCBCSHHHHHHHHHHHTTT------------CCEEEEEETT
T ss_pred HHHHHHHHHHCCC-EEEECCCccCHHHHHHHHHHHcC------------CcEEEEcCch
Confidence 4556666666554 34444457 88888888887543 5678888863
No 120
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=52.10 E-value=30 Score=27.56 Aligned_cols=45 Identities=22% Similarity=0.497 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHcCCCEEEEEe-CC-chHHHHHHHHHhCCcccccccccccCCceEEEecCC
Q 025520 93 HAIDITREAIKEGADAVIAVG-GD-GTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLG 151 (251)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~G-GD-GTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~G 151 (251)
.+.++.+.+.+.++ .||.| |. |--..+..+.++.+ ...+|++|-+
T Consensus 21 ~A~~lg~~La~~g~--~lV~GGg~~GiM~aa~~gA~~~g------------G~~iGv~p~~ 67 (191)
T 1t35_A 21 KAAELGVYMAEQGI--GLVYGGSRVGLMGTIADAIMENG------------GTAIGVMPSG 67 (191)
T ss_dssp HHHHHHHHHHHTTC--EEEECCCCSHHHHHHHHHHHTTT------------CCEEEEEETT
T ss_pred HHHHHHHHHHHCCC--EEEECCCcccHHHHHHHHHHHcC------------CeEEEEeCch
Confidence 45566666666554 44555 55 88888888887543 5789999876
No 121
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=51.22 E-value=85 Score=24.47 Aligned_cols=72 Identities=10% Similarity=0.083 Sum_probs=37.6
Q ss_pred CCCCCeEEEEEcCC-------C-CCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHc-CCCEEEEEe
Q 025520 43 SSRRRDLVFVVNPR-------G-ASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKE-GADAVIAVG 113 (251)
Q Consensus 43 ~~~~~~i~vivNP~-------s-g~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~-~~d~ivv~G 113 (251)
..+..++.||.--. . |+-. +..-..+...|++.. .......+..++++...+..+++..+ ++|+||+.|
T Consensus 12 ~~~~~rv~IittGde~~~~~~~~G~i~-Dsn~~~L~~~l~~~G-~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittG 89 (178)
T 2pjk_A 12 APKSLNFYVITISTSRYEKLLKKEPIV-DESGDIIKQLLIENG-HKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTG 89 (178)
T ss_dssp -CCCCEEEEEEECHHHHHHHHTTCCCC-CHHHHHHHHHHHHTT-CEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEES
T ss_pred CCCCCEEEEEEeCcccccccccCCeEe-ehHHHHHHHHHHHCC-CEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECC
Confidence 34556777776432 2 3322 222233455666542 22222224455555555556665544 599999999
Q ss_pred CCc
Q 025520 114 GDG 116 (251)
Q Consensus 114 GDG 116 (251)
|=|
T Consensus 90 G~s 92 (178)
T 2pjk_A 90 GTG 92 (178)
T ss_dssp CCS
T ss_pred CCC
Confidence 944
No 122
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=50.81 E-value=57 Score=27.50 Aligned_cols=79 Identities=10% Similarity=0.009 Sum_probs=50.2
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEE--EEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNIC--ESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~--~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
..+++.+|.... ..+....+.+...|++. +.++. ........+....++++...++|.|++.+-|.....++
T Consensus 150 g~~~ia~i~~~~---~~~~~~~~~~~~~l~~~---G~~v~~~~~~~~~~~d~~~~~~~l~~~~~dai~~~~~~~~a~~~~ 223 (375)
T 4evq_A 150 GLKKAVTVTWKY---AAGEEMVSGFKKSFTAG---KGEVVKDITIAFPDVEFQSALAEIASLKPDCVYAFFSGGGALKFI 223 (375)
T ss_dssp TCCEEEEEEESS---HHHHHHHHHHHHHHHHT---TCEEEEEEEECTTCCCCHHHHHHHHHHCCSEEEEECCTHHHHHHH
T ss_pred CCcEEEEEecCc---hHHHHHHHHHHHHHHHc---CCeEEEEEecCCCCccHHHHHHHHHhcCCCEEEEecCcchHHHHH
Confidence 678999986322 22334455566667664 23332 22222334555667777777899999989998888889
Q ss_pred HHHHhCC
Q 025520 123 NGFFSAG 129 (251)
Q Consensus 123 n~l~~~~ 129 (251)
..+...+
T Consensus 224 ~~~~~~g 230 (375)
T 4evq_A 224 KDYAAAN 230 (375)
T ss_dssp HHHHHTT
T ss_pred HHHHHcC
Confidence 9887543
No 123
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=50.78 E-value=74 Score=26.58 Aligned_cols=78 Identities=10% Similarity=0.043 Sum_probs=46.4
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEE--EEecCCccHHHHHHHHHHHcCCCEEEEEeCCc-hHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNIC--ESLTSGPSHAIDITREAIKEGADAVIAVGGDG-TLHEV 121 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~--~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDG-Tl~~v 121 (251)
..+++.+|. +.. ..+....+.+...|++. +.++. ........+....++++...++|.|+++ +|+ ....+
T Consensus 138 g~~~ia~i~-~~~--~~~~~~~~~~~~~l~~~---g~~v~~~~~~~~~~~~~~~~~~~l~~~~~d~i~~~-~~~~~a~~~ 210 (358)
T 3hut_A 138 GFTSVAVIG-VTT--DWGLSSAQAFRKAFELR---GGAVVVNEEVPPGNRRFDDVIDEIEDEAPQAIYLA-MAYEDAAPF 210 (358)
T ss_dssp TCCEEEEEE-ESS--HHHHHHHHHHHHHHHHT---TCEEEEEEEECTTCCCCHHHHHHHHHHCCSEEEEE-SCHHHHHHH
T ss_pred CCCEEEEEe-cCc--HHHHHHHHHHHHHHHHc---CCEEEEEEecCCCCccHHHHHHHHHhcCCCEEEEc-cCchHHHHH
Confidence 678999987 322 22334455566667664 23332 1222233455566777777788877765 555 77788
Q ss_pred HHHHHhCC
Q 025520 122 VNGFFSAG 129 (251)
Q Consensus 122 ln~l~~~~ 129 (251)
+..+...+
T Consensus 211 ~~~~~~~g 218 (358)
T 3hut_A 211 LRALRARG 218 (358)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 88886543
No 124
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=50.30 E-value=79 Score=26.53 Aligned_cols=113 Identities=12% Similarity=0.056 Sum_probs=62.3
Q ss_pred CCCCCCCCCCeEEEEEcCCCC-------CCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHc---CCC
Q 025520 38 HGAASSSRRRDLVFVVNPRGA-------SGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKE---GAD 107 (251)
Q Consensus 38 ~~~~~~~~~~~i~vivNP~sg-------~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~---~~d 107 (251)
..++-..+.+.+.+|+|-..= ...+..-.+.+...|+.. ++++.++.--...+..+.++++.+. ..|
T Consensus 23 ~~Y~m~~~~rg~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~L---GF~V~~~~dlt~~em~~~l~~~~~~dh~~~d 99 (272)
T 1m72_A 23 PYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTL---GFKVTVFPNLKSEEINKFIQQTAEMDHSDAD 99 (272)
T ss_dssp SBCCCCSSEEEEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHT---TCEEEEEESCCHHHHHHHHHHHHTSCCTTEE
T ss_pred ccccCCCCCCCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHC---CCEEEEecCcCHHHHHHHHHHHHHhhcCCCC
Confidence 344555666888888875421 122233345566677764 4677666666677888888887653 223
Q ss_pred EE--EE---------EeCCch--HHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhh
Q 025520 108 AV--IA---------VGGDGT--LHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFART 159 (251)
Q Consensus 108 ~i--vv---------~GGDGT--l~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~ 159 (251)
.+ ++ .|=||. +.++++.+-.. ++ .....++-|-+|-+--||.+.+.
T Consensus 100 ~~v~~~lsHG~~~~i~~~D~~v~l~~i~~~f~~~----~c--psL~gKPKlffiqACRg~~~~~g 158 (272)
T 1m72_A 100 CLLVAVLTHGELGMLYAKDTHYKPDNLWYYFTAD----KC--PTLAGKPKLFFIQACQGDRLDGG 158 (272)
T ss_dssp EEEEEEESCEETTEEECSSSEECTTHHHHTTSTT----TC--GGGTTSCEEEEEESCSSSBCBCC
T ss_pred EEEEEEcCCCCCCEEEecCCcEEHHHHHHHhccc----cC--hhhcCCceEEEEeCCCCCcccCC
Confidence 22 22 233443 23333322110 00 11234677999999888888543
No 125
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=49.99 E-value=78 Score=25.21 Aligned_cols=48 Identities=21% Similarity=0.245 Sum_probs=27.7
Q ss_pred HHHHHHhhcCCC-ccEEEEecCCccHHHHHHHHHHHc-CCCEEEEEeCCc
Q 025520 69 LLPYLRSRLSVD-CNICESLTSGPSHAIDITREAIKE-GADAVIAVGGDG 116 (251)
Q Consensus 69 i~~~L~~~~~~~-~~~~~~~t~~~~~a~~~~~~~~~~-~~d~ivv~GGDG 116 (251)
+...|++..... .....+..++.+...+..+++..+ ++|+|++.||=|
T Consensus 28 L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitTGGtg 77 (195)
T 1di6_A 28 LEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGTG 77 (195)
T ss_dssp HHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred HHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 445566543211 112224455555566666666553 799999999955
No 126
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=49.20 E-value=88 Score=24.02 Aligned_cols=68 Identities=19% Similarity=0.205 Sum_probs=34.8
Q ss_pred CCeEEEEE--cCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHH-cCCCEEEEEeCCc
Q 025520 46 RRDLVFVV--NPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIK-EGADAVIAVGGDG 116 (251)
Q Consensus 46 ~~~i~viv--NP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~-~~~d~ivv~GGDG 116 (251)
..++.||. |.. |+ ..+..-..+...|++.. .......+..++.+...+..+++.. .++|+||+.||=|
T Consensus 13 ~~rv~Ii~tGdEl-g~-i~Dsn~~~l~~~L~~~G-~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g 83 (169)
T 1y5e_A 13 EVRCKIVTISDTR-TE-ETDKSGQLLHELLKEAG-HKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTG 83 (169)
T ss_dssp CCEEEEEEECSSC-CT-TTCHHHHHHHHHHHHHT-CEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCCS
T ss_pred CCEEEEEEEcCcc-Ce-eccChHHHHHHHHHHCC-CeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence 34566655 444 22 11222233455666542 1222222444455555555555554 2799999999965
No 127
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=49.13 E-value=70 Score=26.51 Aligned_cols=78 Identities=13% Similarity=0.135 Sum_probs=47.0
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEE--EEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNIC--ESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~--~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
..+++.+|..+.. .+....+.+...+++. +.++. ........+....++++...++|.|++.+-|.....++
T Consensus 137 g~~~i~~i~~~~~---~~~~~~~~~~~~l~~~---g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~i~~~~~~~~a~~~~ 210 (346)
T 1usg_A 137 KPQRIAIIHDKQQ---YGEGLARSVQDGLKAA---NANVVFFDGITAGEKDFSALIARLKKENIDFVYYGGYYPEMGQML 210 (346)
T ss_dssp CCSSEEEEECSSH---HHHHHHHHHHHHHHHT---TCCEEEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEEECCCc---hHHHHHHHHHHHHHHc---CCEEEEEeccCCCCcCHHHHHHHHHhcCCCEEEEcCcchHHHHHH
Confidence 5688999886421 2233445555666654 23332 12222333455667777777899988887666667788
Q ss_pred HHHHhC
Q 025520 123 NGFFSA 128 (251)
Q Consensus 123 n~l~~~ 128 (251)
..+...
T Consensus 211 ~~~~~~ 216 (346)
T 1usg_A 211 RQARSV 216 (346)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 887653
No 128
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=49.00 E-value=1.2e+02 Score=25.40 Aligned_cols=113 Identities=15% Similarity=0.103 Sum_probs=58.8
Q ss_pred CCCCCCCCeEEEEEcCCCC--------CCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHc---CCCE
Q 025520 40 AASSSRRRDLVFVVNPRGA--------SGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKE---GADA 108 (251)
Q Consensus 40 ~~~~~~~~~i~vivNP~sg--------~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~---~~d~ 108 (251)
+.-..+++.+.+|+|-..= ...+..-.+.+...|+.. ++++.++.--...+..+.++++.+. .+|.
T Consensus 14 Y~m~~~~rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~L---gF~V~~~~dlt~~em~~~l~~~~~~~h~~~D~ 90 (277)
T 1nw9_B 14 YILSMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSL---HFMVEVKGDLTAKKMVLALLELARQDHGALDC 90 (277)
T ss_dssp CCCCCSSCEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHT---TEEEEEEESCCHHHHHHHHHHHHHSCCTTCSE
T ss_pred eeCCCCcccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHHC---CCEEEEEcCCCHHHHHHHHHHHHHhhcccCCe
Confidence 4445667788888876531 112233345566667664 4677666655667788888887654 3453
Q ss_pred EEE----EeC--------------Cc---hHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhhcC
Q 025520 109 VIA----VGG--------------DG---TLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFG 161 (251)
Q Consensus 109 ivv----~GG--------------DG---Tl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg 161 (251)
+|+ -|. || .|.++++.+-... + .....+|-|-+|-+--||.+.+...
T Consensus 91 ~vv~ilSHG~~~~~~~~~g~iy~~D~~~v~l~~i~~~f~~~~----C--psL~gKPKlffiQACRG~~~d~g~~ 158 (277)
T 1nw9_B 91 CVVVILSHGCQASHLQFPGAVYGTDGCPVSVEKIVNIFNGTS----C--PSLGGKPKLFFIQACGGEQKDHGFE 158 (277)
T ss_dssp EEEEEEEEEECCCCSSSCCEEECTTSCEEEHHHHHHTTCTTT----C--GGGTTSCEEEEEEEEC---------
T ss_pred EEEEEeCCCCccccccCCCcEEecCCceeeHHHHHHHhcccC----C--hhHcCCCcEEEEeccCCCcccCCce
Confidence 221 232 44 2556655442110 1 1234467899999999998865543
No 129
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=48.80 E-value=32 Score=28.08 Aligned_cols=44 Identities=27% Similarity=0.537 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCC-chHHHHHHHHHhCCcccccccccccCCceEEEec
Q 025520 93 HAIDITREAIKEGADAVIAVGGD-GTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIP 149 (251)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGD-GTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP 149 (251)
.+.++.+.+.+.++ .||..||. |-...+..+.+..+ ...+|++|
T Consensus 29 ~A~~lg~~LA~~g~-~lV~GGg~~GlM~aa~~gA~~~G------------G~~iGv~p 73 (216)
T 1ydh_A 29 AAIELGNELVKRKI-DLVYGGGSVGLMGLISRRVYEGG------------LHVLGIIP 73 (216)
T ss_dssp HHHHHHHHHHHTTC-EEEECCCSSHHHHHHHHHHHHTT------------CCEEEEEE
T ss_pred HHHHHHHHHHHCCC-EEEECCCcccHhHHHHHHHHHcC------------CcEEEEec
Confidence 34555666665554 44555565 77777777776543 46778877
No 130
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=48.69 E-value=83 Score=25.76 Aligned_cols=76 Identities=16% Similarity=0.077 Sum_probs=40.4
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCch-HHHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGT-LHEVVNG 124 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGT-l~~vln~ 124 (251)
.+|.+++.. ....-....++.++..++.. ++++.+..+.. +....+..+.+...+.|.||+.+.|.+ +.+.+..
T Consensus 3 ~~Ig~i~~~-~~~~~~~~~~~gi~~~a~~~---g~~l~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~ 78 (306)
T 2vk2_A 3 LTVGFSQVG-SESGWRAAETNVAKSEAEKR---GITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKE 78 (306)
T ss_dssp CEEEEEECC-CCSHHHHHHHHHHHHHHHHH---TCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHHH
T ss_pred eEEEEEeCC-CCCHHHHHHHHHHHHHHHHc---CCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHH
Confidence 456666543 22111112223333444443 35555444432 333445667777778999999988764 3566666
Q ss_pred HH
Q 025520 125 FF 126 (251)
Q Consensus 125 l~ 126 (251)
+.
T Consensus 79 ~~ 80 (306)
T 2vk2_A 79 AK 80 (306)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 131
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=48.35 E-value=63 Score=26.97 Aligned_cols=77 Identities=12% Similarity=0.096 Sum_probs=39.3
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCc-cHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGP-SHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~-~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
.+.+.+.+++.... +.-....++.++..+++. ++++.+..+... ....+..+.+...+.|.||+.+.+.+- +.+
T Consensus 58 ~~~~~Ig~i~~~~~-~~~~~~~~~gi~~~a~~~---g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~ 132 (332)
T 2hsg_A 58 KKTTTVGVIIPDIS-NIFYAELARGIEDIATMY---KYNIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSGNVTE-EHV 132 (332)
T ss_dssp C-CCEEEEEEC--C-CSHHHHHHHHHHHHHHHH---TCEEEEEECCSHHHHHHHHHHHTSCCSSCCEEECCSSCCH-HHH
T ss_pred CCCCEEEEEeCCCC-CcHHHHHHHHHHHHHHHc---CCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCH-HHH
Confidence 45677888875322 111122333344444443 355544443321 222344555556789999999877653 555
Q ss_pred HHH
Q 025520 123 NGF 125 (251)
Q Consensus 123 n~l 125 (251)
..+
T Consensus 133 ~~l 135 (332)
T 2hsg_A 133 EEL 135 (332)
T ss_dssp HHH
T ss_pred HHH
Confidence 555
No 132
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=48.16 E-value=79 Score=26.32 Aligned_cols=77 Identities=17% Similarity=0.162 Sum_probs=46.7
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHH
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVN 123 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln 123 (251)
+..|++.||+||...+ +....+.++..++.. ++++......+..+..+..+.+. .+.|.|++ ..|+++.....
T Consensus 138 P~~k~vgvi~~~~~~~--s~~~~~~~~~~~~~~---g~~~v~~~~~~~~~~~~~~~~l~-~~~d~i~~-~~d~~~~~~~~ 210 (302)
T 3lkv_A 138 PNVKSIGVVYNPGEAN--AVSLMELLKLSAAKH---GIKLVEATALKSADVQSATQAIA-EKSDVIYA-LIDNTVASAIE 210 (302)
T ss_dssp TTCCEEEEEECTTCHH--HHHHHHHHHHHHHHT---TCEEEEEECSSGGGHHHHHHHHH-TTCSEEEE-CSCHHHHHTHH
T ss_pred CCCCEEEEEeCCCccc--HHHHHHHHHHHHHHc---CCEEEEEecCChHHHHHHHHhcc-CCeeEEEE-eCCcchhhHHH
Confidence 5788999999986422 222233344444442 35555555556666666555543 56787764 67999887777
Q ss_pred HHHh
Q 025520 124 GFFS 127 (251)
Q Consensus 124 ~l~~ 127 (251)
.+..
T Consensus 211 ~i~~ 214 (302)
T 3lkv_A 211 GMIV 214 (302)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 133
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=48.03 E-value=92 Score=26.77 Aligned_cols=113 Identities=12% Similarity=0.059 Sum_probs=63.3
Q ss_pred CCCCCCCCCCeEEEEEcCCC-------CCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHc---CCC
Q 025520 38 HGAASSSRRRDLVFVVNPRG-------ASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKE---GAD 107 (251)
Q Consensus 38 ~~~~~~~~~~~i~vivNP~s-------g~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~---~~d 107 (251)
..++-..+.+.+.+|+|-.. ....+..-.+.+...|+.. ++++.++.--...+..+.++++.+. ..|
T Consensus 51 ~~Y~m~~~~rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~L---GF~V~~~~dlt~~em~~~l~~f~~~dh~~~D 127 (310)
T 2nn3_C 51 PYYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTL---GFKVTVFPNLKSEEINKFIQQTAEMDHSDAD 127 (310)
T ss_dssp SBCCCCSSBCCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHT---TCEEEEEESCCHHHHHHHHHHHHSSCGGGBS
T ss_pred ccccCCCCCcCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHC---CCEEEEecCCCHHHHHHHHHHHHHhccCCCC
Confidence 34555666678888887441 1122233345566677764 4677666666677787878777643 234
Q ss_pred E-E-E---------EEeCCch--HHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhh
Q 025520 108 A-V-I---------AVGGDGT--LHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFART 159 (251)
Q Consensus 108 ~-i-v---------v~GGDGT--l~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~ 159 (251)
. | + +.|=||. |.++++.+-... + .....++-|-+|-+--||.+.+.
T Consensus 128 ~~vv~ilSHG~~g~i~g~D~~v~l~~I~~~f~~~~----C--psL~gKPKlffiQACRG~~~d~g 186 (310)
T 2nn3_C 128 CLLVAVLTAGELGMLYAKDTHYKPDNLWYYFTADK----C--PTLAGKPKLFFIQACQGDRLDGG 186 (310)
T ss_dssp CEEEEEEEEEETTEEECSSCEECTHHHHGGGSTTT----C--GGGTTSCEEEEEEEECCCCCCCC
T ss_pred EEEEEEeCCCCCCEEEecCCcEEHHHHHHHhcccc----C--hhhcCCceEEEEecccCCccccC
Confidence 2 2 2 2333553 344444332110 1 12344678999999888888543
No 134
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=47.49 E-value=79 Score=25.01 Aligned_cols=66 Identities=9% Similarity=0.026 Sum_probs=35.4
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCc
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDG 116 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDG 116 (251)
.+.+.+++.... ...|.++..-+++.+. .++++.+..+.. .....+..+.+...+.|.||+.+.+.
T Consensus 2 s~~Igvi~~~~~-----~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 69 (255)
T 1byk_A 2 DKVVAIIVTRLD-----SLSENLAVQTMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKRRNIDGVVLFGFTG 69 (255)
T ss_dssp CCEEEEEESCTT-----CHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred CCEEEEEeCCCC-----CccHHHHHHHHHHHHHHcCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecCcc
Confidence 456777774322 2344444433332221 135554444432 23334556667677899999998653
No 135
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=47.47 E-value=63 Score=27.83 Aligned_cols=64 Identities=16% Similarity=0.181 Sum_probs=32.9
Q ss_pred cEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCch-------HHHHHHHHHhCCcccccccccccCCceEEEecCCChh
Q 025520 82 NICESLTSGPSHAIDITREAIKEGADAVIAVGGDGT-------LHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGS 154 (251)
Q Consensus 82 ~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGT-------l~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN 154 (251)
+..++.+...+...++++. .++-|+-||||. |.++++-.-. ......+.|+++--+.-|
T Consensus 94 D~iviR~~~~~~~~~la~~-----~~vPVINagdg~~~HPtQaLaDl~Ti~e~---------~g~l~glkva~vGD~~~~ 159 (304)
T 3r7f_A 94 DVCVIRHSEDEYYEELVSQ-----VNIPILNAGDGCGQHPTQSLLDLMTIYEE---------FNTFKGLTVSIHGDIKHS 159 (304)
T ss_dssp CEEEEECSSTTCHHHHHHH-----CSSCEEESCCTTSCCHHHHHHHHHHHHHH---------HSCCTTCEEEEESCCTTC
T ss_pred CEEEEecCChhHHHHHHHh-----CCCCEEeCCCCCCcCcHHHHHHHHHHHHH---------hCCCCCCEEEEEcCCCCc
Confidence 4444555555555555432 235588888874 2222221110 012346788888777655
Q ss_pred HHhhh
Q 025520 155 DFART 159 (251)
Q Consensus 155 ~fa~~ 159 (251)
..+++
T Consensus 160 rva~S 164 (304)
T 3r7f_A 160 RVARS 164 (304)
T ss_dssp HHHHH
T ss_pred chHHH
Confidence 55554
No 136
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=46.61 E-value=1.2e+02 Score=24.79 Aligned_cols=80 Identities=9% Similarity=0.111 Sum_probs=44.8
Q ss_pred CCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 43 SSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 43 ~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
+++.+.|.||+...+ +.-....++.++..+++. ++++.+..+.. .....++.+.+...+.|.||+.+.+.+-.+.
T Consensus 12 ~~~s~~Igvi~~~~~-~~~~~~~~~gi~~~a~~~---g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~ 87 (303)
T 3kke_A 12 HSRSGTIGLIVPDVN-NAVFADMFSGVQMAASGH---STDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDFDDDM 87 (303)
T ss_dssp -----CEEEEESCTT-STTHHHHHHHHHHHHHHT---TCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTCCHHH
T ss_pred hCCCCEEEEEeCCCc-ChHHHHHHHHHHHHHHHC---CCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCcHHH
Confidence 345667888886433 222233444455555543 45665555543 3344556677777899999999988774325
Q ss_pred HHHHH
Q 025520 122 VNGFF 126 (251)
Q Consensus 122 ln~l~ 126 (251)
+..+.
T Consensus 88 ~~~l~ 92 (303)
T 3kke_A 88 LAAVL 92 (303)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66554
No 137
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=46.25 E-value=98 Score=24.91 Aligned_cols=79 Identities=5% Similarity=0.015 Sum_probs=40.9
Q ss_pred CCCCCeEEEEEcC-----CCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCcc-HHHHHHHHHHHcCCCEEEEEeCCc
Q 025520 43 SSRRRDLVFVVNP-----RGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPS-HAIDITREAIKEGADAVIAVGGDG 116 (251)
Q Consensus 43 ~~~~~~i~vivNP-----~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~-~a~~~~~~~~~~~~d~ivv~GGDG 116 (251)
+++.+.|.|++.. .. +.-....++.+...+++. ++++.+..+.... ...++.+.+...++|.||+.+.+.
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~-~~~~~~~~~gi~~~a~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~ 80 (292)
T 3k4h_A 5 NQTTKTLGLVMPSSASKAFQ-NPFFPEVIRGISSFAHVE---GYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSRE 80 (292)
T ss_dssp --CCCEEEEECSSCHHHHTT-STHHHHHHHHHHHHHHHT---TCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBT
T ss_pred cCCCCEEEEEecCCcccccc-CHHHHHHHHHHHHHHHHc---CCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCC
Confidence 3466777777754 22 111122233333444442 3555444333322 223445556667899999998876
Q ss_pred hHHHHHHHHH
Q 025520 117 TLHEVVNGFF 126 (251)
Q Consensus 117 Tl~~vln~l~ 126 (251)
+ .+.+..+.
T Consensus 81 ~-~~~~~~l~ 89 (292)
T 3k4h_A 81 N-DRIIQYLH 89 (292)
T ss_dssp T-CHHHHHHH
T ss_pred C-hHHHHHHH
Confidence 5 35666664
No 138
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=45.96 E-value=86 Score=26.36 Aligned_cols=79 Identities=10% Similarity=0.025 Sum_probs=46.8
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEE--EEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNIC--ESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~--~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
..+++.+|.... ..+....+.+...|++.. .++. ........+....++++...++|.|++++-+.....++
T Consensus 158 g~~~ia~i~~~~---~~~~~~~~~~~~~l~~~g---~~v~~~~~~~~~~~d~~~~~~~~~~~~~dav~~~~~~~~a~~~~ 231 (386)
T 3sg0_A 158 GAKKVGYIGFSD---AYGEGYYKVLAAAAPKLG---FELTTHEVYARSDASVTGQVLKIIATKPDAVFIASAGTPAVLPQ 231 (386)
T ss_dssp TCCEEEEEEESS---HHHHHHHHHHHHHHHHHT---CEECCCEEECTTCSCCHHHHHHHHHTCCSEEEEECCSGGGHHHH
T ss_pred CCCEEEEEecCc---hHHHHHHHHHHHHHHHcC---CEEEEEEeeCCCCCcHHHHHHHHHhcCCCEEEEecCcchHHHHH
Confidence 568999885321 223344555666666642 2221 12222334555667777777899988877656667788
Q ss_pred HHHHhCC
Q 025520 123 NGFFSAG 129 (251)
Q Consensus 123 n~l~~~~ 129 (251)
..+.+.+
T Consensus 232 ~~~~~~g 238 (386)
T 3sg0_A 232 KALRERG 238 (386)
T ss_dssp HHHHHTT
T ss_pred HHHHHcC
Confidence 8886543
No 139
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=45.89 E-value=1.3e+02 Score=25.24 Aligned_cols=77 Identities=9% Similarity=0.095 Sum_probs=42.3
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecC-CccHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTS-GPSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
.+.+.+.|++...+ ...|.++...+...+. .++++.+..+. +.....++.+.+...+.|.||+.+.+.+- +.
T Consensus 68 ~~~~~Igvi~~~~~-----~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~-~~ 141 (355)
T 3e3m_A 68 KRSGFVGLLLPSLN-----NLHFAQTAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRRRPEAMVLSYDGHTE-QT 141 (355)
T ss_dssp ---CEEEEEESCSB-----CHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEECSCCCH-HH
T ss_pred CCCCEEEEEeCCCC-----chHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCCH-HH
Confidence 45567777775332 2344444433332221 24565555443 33344466677777899999999988764 55
Q ss_pred HHHHH
Q 025520 122 VNGFF 126 (251)
Q Consensus 122 ln~l~ 126 (251)
+..+.
T Consensus 142 ~~~l~ 146 (355)
T 3e3m_A 142 IRLLQ 146 (355)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 140
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=45.73 E-value=1e+02 Score=24.10 Aligned_cols=71 Identities=15% Similarity=0.096 Sum_probs=31.1
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEec------CCccHHHHHHHHHHHcCCCEEEE
Q 025520 38 HGAASSSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLT------SGPSHAIDITREAIKEGADAVIA 111 (251)
Q Consensus 38 ~~~~~~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t------~~~~~a~~~~~~~~~~~~d~ivv 111 (251)
.+.++++...+| .|-+-++|- ..-+.++..|++. ++++..+-+ ++|+-+...++.....+.|.-|+
T Consensus 13 ~~~~~~~~~MkI-aIgsDhaG~----~lK~~i~~~L~~~---G~eV~D~G~~~~~~~dYPd~a~~va~~V~~g~~d~GIl 84 (166)
T 3s5p_A 13 EAQTQGPGSMKV-AFASDHGGR----DLRMFLQQRASAH---GYEVMDLGTESDASVDYPDFAKIGCEAVTSGRADCCIL 84 (166)
T ss_dssp ------CTTCEE-EEEECGGGH----HHHHHHHHHHHHT---TCEEEEEEC--------CHHHHHHHHHHHTTSCSEEEE
T ss_pred eecCCCCCceEE-EEEECchHH----HHHHHHHHHHHHC---CCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCcEEEE
Confidence 334455555554 455666542 2223456677763 355554432 24444445555544444554444
Q ss_pred EeCCc
Q 025520 112 VGGDG 116 (251)
Q Consensus 112 ~GGDG 116 (251)
+.|-|
T Consensus 85 iCGTG 89 (166)
T 3s5p_A 85 VCGTG 89 (166)
T ss_dssp EESSS
T ss_pred EcCCc
Confidence 44444
No 141
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=45.60 E-value=1.3e+02 Score=24.80 Aligned_cols=78 Identities=10% Similarity=0.162 Sum_probs=44.2
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCch-HHHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGT-LHEVVN 123 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGT-l~~vln 123 (251)
.++|.|++...+. .-....++.++..+++. ++++.+..+.. .....+.++.+...++|.||+.+-|.+ ....+.
T Consensus 3 ~~~Igvi~~~~~~-~~~~~~~~gi~~~a~~~---g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~ 78 (330)
T 3uug_A 3 KGSVGIAMPTKSS-ARWIDDGNNIVKQLQEA---GYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLK 78 (330)
T ss_dssp CCEEEEEECCSSS-THHHHHHHHHHHHHHHT---TCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHH
T ss_pred CcEEEEEeCCCcc-hHHHHHHHHHHHHHHHc---CCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHH
Confidence 4567777754432 11122233344444442 45555444432 233445667777789999999999864 466677
Q ss_pred HHHh
Q 025520 124 GFFS 127 (251)
Q Consensus 124 ~l~~ 127 (251)
.+..
T Consensus 79 ~~~~ 82 (330)
T 3uug_A 79 QAGE 82 (330)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 142
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=45.58 E-value=38 Score=27.29 Aligned_cols=46 Identities=20% Similarity=0.395 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCC-chHHHHHHHHHhCCcccccccccccCCceEEEecCC
Q 025520 93 HAIDITREAIKEGADAVIAVGGD-GTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLG 151 (251)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGD-GTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~G 151 (251)
.+.++.+.+.+.++ .||..||. |-...+..+..+.+ ...+|++|-.
T Consensus 41 ~A~~lg~~La~~g~-~lV~GGG~~GlM~a~~~gA~~~G------------G~viGv~p~~ 87 (199)
T 3qua_A 41 LAAEVGSSIAARGW-TLVSGGGNVSAMGAVAQAARAKG------------GHTVGVIPKA 87 (199)
T ss_dssp HHHHHHHHHHHTTC-EEEECCBCSHHHHHHHHHHHHTT------------CCEEEEEEGG
T ss_pred HHHHHHHHHHHCCC-EEEECCCccCHHHHHHHHHHHcC------------CcEEEEeCch
Confidence 34455666666554 34444566 88888888887643 4678888863
No 143
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=45.35 E-value=96 Score=24.60 Aligned_cols=59 Identities=14% Similarity=0.122 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhcCCCccEEEEecC---CccHHHHHHHHHHHcC-CCEEEEEeCCc-hHHHHHHHHHh
Q 025520 66 WKKLLPYLRSRLSVDCNICESLTS---GPSHAIDITREAIKEG-ADAVIAVGGDG-TLHEVVNGFFS 127 (251)
Q Consensus 66 ~~~i~~~L~~~~~~~~~~~~~~t~---~~~~a~~~~~~~~~~~-~d~ivv~GGDG-Tl~~vln~l~~ 127 (251)
++.+...+++. ++++.+..+. +.....+..+.+...+ +|.||+.+-|. ...+.+..+..
T Consensus 19 ~~gi~~~~~~~---g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~~~~~~~ 82 (276)
T 3ksm_A 19 YLGAQKAADEA---GVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVAQYRA 82 (276)
T ss_dssp HHHHHHHHHHH---TCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHc---CCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHH
Confidence 33444444443 3555444322 2233345667777778 99999999764 45566776653
No 144
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=45.08 E-value=72 Score=27.18 Aligned_cols=81 Identities=7% Similarity=-0.094 Sum_probs=50.5
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEE--EecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICE--SLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~--~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
..+++.+|.... ..+....+.+...|++.. .+.++.. .......+....++++...++|+|++.+-+.....++
T Consensus 141 g~~~vaii~~~~---~~g~~~~~~~~~~l~~~~-~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~ 216 (387)
T 3i45_A 141 PITRWATIAPNY---EYGQSAVARFKELLLAAR-PEVTFVAEQWPALYKLDAGPTVQALQQAEPEGLFNVLFGADLPKFV 216 (387)
T ss_dssp SCCEEEEECCSS---HHHHHHHHHHHHHHHHHC-TTCEEEEEECCCTTCCCHHHHHHHHHHTCCSEEEECCCTTHHHHHH
T ss_pred CCCeEEEEeCCc---hHhHHHHHHHHHHHHHhC-CCcEEEeeecCCCCCcCHHHHHHHHHhCCCCEEEEcCccHHHHHHH
Confidence 568888887321 223344455566666541 1233321 2222345677778888888999999988888888888
Q ss_pred HHHHhCC
Q 025520 123 NGFFSAG 129 (251)
Q Consensus 123 n~l~~~~ 129 (251)
..+...+
T Consensus 217 ~~~~~~g 223 (387)
T 3i45_A 217 REGRVRG 223 (387)
T ss_dssp HHHHHHT
T ss_pred HHHHHcC
Confidence 8876543
No 145
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=45.06 E-value=40 Score=27.44 Aligned_cols=45 Identities=24% Similarity=0.489 Sum_probs=28.1
Q ss_pred HHHHHHHHHHcCCCEEEEEeCC-chHHHHHHHHHhCCcccccccccccCCceEEEecCC
Q 025520 94 AIDITREAIKEGADAVIAVGGD-GTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLG 151 (251)
Q Consensus 94 a~~~~~~~~~~~~d~ivv~GGD-GTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~G 151 (251)
+.++.+.+.+.++ .||..||. |---.+..+.+..+ ...+|+||-.
T Consensus 34 A~~lg~~LA~~G~-~vVsGGg~~GiM~aa~~gAl~~G------------G~tiGVlP~~ 79 (215)
T 2a33_A 34 AVDLGNELVSRNI-DLVYGGGSIGLMGLVSQAVHDGG------------RHVIGIIPKT 79 (215)
T ss_dssp HHHHHHHHHHTTC-EEEECCCSSHHHHHHHHHHHHTT------------CCEEEEEESS
T ss_pred HHHHHHHHHHCCC-EEEECCChhhHhHHHHHHHHHcC------------CcEEEEcchH
Confidence 4555666665554 33444555 87777777777543 4678888864
No 146
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=44.94 E-value=1.4e+02 Score=24.99 Aligned_cols=78 Identities=13% Similarity=0.107 Sum_probs=43.9
Q ss_pred CCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCchHHH
Q 025520 43 SSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTLHE 120 (251)
Q Consensus 43 ~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~ 120 (251)
+.+.+.+.+++...+ + ..|..+..-++..+. .++++.+..+.. ++...+..+.+...+.|.||+++-+.+- +
T Consensus 65 ~~~~~~Ig~i~~~~~-~----~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~-~ 138 (344)
T 3kjx_A 65 SNRVNLVAVIIPSLS-N----MVFPEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEHSE-A 138 (344)
T ss_dssp TSCCSEEEEEESCSS-S----SSHHHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCCH-H
T ss_pred cCCCCEEEEEeCCCC-c----HHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCCCH-H
Confidence 345667888874332 2 234444443333322 245555444433 3344456667777789999999887654 4
Q ss_pred HHHHHH
Q 025520 121 VVNGFF 126 (251)
Q Consensus 121 vln~l~ 126 (251)
.+..+.
T Consensus 139 ~~~~l~ 144 (344)
T 3kjx_A 139 ARAMLD 144 (344)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 147
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=44.46 E-value=16 Score=28.98 Aligned_cols=53 Identities=19% Similarity=0.143 Sum_probs=33.8
Q ss_pred EEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCCh--hHHhhh-----cCCCCCHHHHHHHHHc
Q 025520 108 AVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTG--SDFART-----FGWRNDPYEAVERIAK 175 (251)
Q Consensus 108 ~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTg--N~fa~~-----lg~~~~~~~al~~i~~ 175 (251)
.|++-||=||+.|+...+. ...|+.++|. .. ..|.+. +-+..+++++++.+.+
T Consensus 111 ~IvlpGg~GTL~E~~~al~--------------~~kpV~~l~~-~~~~~gfi~~~~~~~i~~~~~~~e~~~~l~~ 170 (176)
T 2iz6_A 111 LVAVGMGPGTAAEVALALK--------------AKKPVVLLGT-QPEAEKFFTSLDAGLVHVAADVAGAIAAVKQ 170 (176)
T ss_dssp EEEESCCHHHHHHHHHHHH--------------TTCCEEEESC-CHHHHHHHHHHCTTTEEEESSHHHHHHHHHH
T ss_pred EEEecCCccHHHHHHHHHH--------------hCCcEEEEcC-cccccccCChhhcCeEEEcCCHHHHHHHHHH
Confidence 5666688999999999884 3578888987 22 112111 1223467777776654
No 148
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=44.08 E-value=1.3e+02 Score=24.72 Aligned_cols=35 Identities=14% Similarity=0.262 Sum_probs=24.2
Q ss_pred cHHHHHHHHHHHcCCCEEEEEeCCch-HHHHHHHHH
Q 025520 92 SHAIDITREAIKEGADAVIAVGGDGT-LHEVVNGFF 126 (251)
Q Consensus 92 ~~a~~~~~~~~~~~~d~ivv~GGDGT-l~~vln~l~ 126 (251)
....+.++++...++|.||+.+.|.+ +...+..+.
T Consensus 44 ~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~ 79 (313)
T 2h3h_A 44 NAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKAL 79 (313)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHH
Confidence 34445667777789999999888764 345666654
No 149
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=43.98 E-value=53 Score=28.35 Aligned_cols=67 Identities=13% Similarity=0.182 Sum_probs=34.0
Q ss_pred EEEEcCCCCCC-ChhhHHHHHHHHHHhhcCCCccEEEEecC------CccH----HHHHHHHHHHcCCCEEEE-EeCCch
Q 025520 50 VFVVNPRGASG-RTGKEWKKLLPYLRSRLSVDCNICESLTS------GPSH----AIDITREAIKEGADAVIA-VGGDGT 117 (251)
Q Consensus 50 ~vivNP~sg~g-~~~~~~~~i~~~L~~~~~~~~~~~~~~t~------~~~~----a~~~~~~~~~~~~d~ivv-~GGDGT 117 (251)
.=|+-|.++-+ .....++..+..|++. ++++..-.+. ..++ +.++.+.+...+.+.|++ .||+|+
T Consensus 15 I~ivaPSs~~~~~~~~~~~~~~~~L~~~---G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~ 91 (327)
T 4h1h_A 15 IRIIAPSRSIGIMADNQVEIAVNRLTDM---GFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIGGFNS 91 (327)
T ss_dssp EEEECSSSCGGGSCHHHHHHHHHHHHHT---TCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCCCSCG
T ss_pred EEEEeCCCCcCccCHHHHHHHHHHHHhC---CCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCCchhH
Confidence 44566776532 2334556666677764 2444321111 1122 333333333456676665 599998
Q ss_pred HH
Q 025520 118 LH 119 (251)
Q Consensus 118 l~ 119 (251)
..
T Consensus 92 ~r 93 (327)
T 4h1h_A 92 NQ 93 (327)
T ss_dssp GG
T ss_pred HH
Confidence 64
No 150
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=43.70 E-value=1.4e+02 Score=24.89 Aligned_cols=113 Identities=15% Similarity=0.141 Sum_probs=65.0
Q ss_pred CCCCCCCCeEEEEEcCC---------------CCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHc
Q 025520 40 AASSSRRRDLVFVVNPR---------------GASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKE 104 (251)
Q Consensus 40 ~~~~~~~~~i~vivNP~---------------sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~ 104 (251)
+.-..+++.+.+|+|-. .....+..-.+.+...|+.. ++++.++.--...+..+..+++.+.
T Consensus 10 Y~m~~~~rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~L---GF~V~~~~dlt~~em~~~l~~~~~~ 86 (271)
T 3h11_B 10 YQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEEL---HFEIKPHDDCTVEQIYEILKIYQLM 86 (271)
T ss_dssp CCCCSSSCCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHHHT---TCEEEEEESCCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHHHC---CCEEEEEeCCCHHHHHHHHHHHHHh
Confidence 44455667788888752 11112233345566677664 4677666666677888888877653
Q ss_pred ---CCCEEE-----------EEeCCch---HHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhhcC
Q 025520 105 ---GADAVI-----------AVGGDGT---LHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFG 161 (251)
Q Consensus 105 ---~~d~iv-----------v~GGDGT---l~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg 161 (251)
..|.++ +.|=||. |.++.+.+-... + .....+|-|-+|-+--||.+.+...
T Consensus 87 ~h~~~d~~v~~ilSHG~~g~i~g~D~~~v~l~~I~~~f~~~~----C--psL~gKPKlffiQACRG~~~~~gv~ 154 (271)
T 3h11_B 87 DHSNMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLK----C--PSLAGKPKVFFIQACQGDNYQKGIP 154 (271)
T ss_dssp CCTTCSCEEEEEESCEETTEEECTTSCEEEHHHHHGGGSTTT----C--GGGTTSCEEEEEESCCSSBCC----
T ss_pred cCCCCCEEEEEEEcCCcCCEEEecCCCeecHHHHHHHhhhcc----C--hhhcCCccEEEEeccCCCcccCCce
Confidence 345332 3566774 566666542211 1 1234567899999999998866443
No 151
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=43.48 E-value=1e+02 Score=23.25 Aligned_cols=62 Identities=13% Similarity=0.170 Sum_probs=37.5
Q ss_pred CCCCCCCCeEEEEEcCCC--------CCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHc
Q 025520 40 AASSSRRRDLVFVVNPRG--------ASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKE 104 (251)
Q Consensus 40 ~~~~~~~~~i~vivNP~s--------g~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~ 104 (251)
++-..+++.+.+|+|-.. .+..+..-.+.+...|+.. ++++.++.--+..+..+.++++.+.
T Consensus 9 Y~m~~~~rG~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~L---gF~V~~~~dlt~~em~~~l~~~~~~ 78 (146)
T 2dko_A 9 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNL---KYEVRNKNDLTREEIVELMRDVSKE 78 (146)
T ss_dssp CCCCSSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHT---TCEEEEEESCCHHHHHHHHHHHHHS
T ss_pred ccCCCCCceEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHC---CCEEEEeeCCCHHHHHHHHHHHHHh
Confidence 344556677888887541 1112233345566667663 4677666666677788888877654
No 152
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=43.35 E-value=61 Score=27.34 Aligned_cols=28 Identities=11% Similarity=0.129 Sum_probs=22.4
Q ss_pred CCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecC
Q 025520 105 GADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPL 150 (251)
Q Consensus 105 ~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~ 150 (251)
..|.+|..|| +|+.|++. ...|..++|.
T Consensus 225 ~aDlvI~~gG-~T~~E~~~-----------------~g~P~i~ip~ 252 (282)
T 3hbm_A 225 ESNKLIISAS-SLVNEALL-----------------LKANFKAICY 252 (282)
T ss_dssp TEEEEEEESS-HHHHHHHH-----------------TTCCEEEECC
T ss_pred HCCEEEECCc-HHHHHHHH-----------------cCCCEEEEeC
Confidence 5789999999 99999876 2467777885
No 153
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=43.23 E-value=58 Score=26.23 Aligned_cols=70 Identities=13% Similarity=0.088 Sum_probs=39.5
Q ss_pred CCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCch
Q 025520 43 SSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGT 117 (251)
Q Consensus 43 ~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGT 117 (251)
+++.+.|.|++.-.+ ..-....++.+...+++. ++++.+..+.+.....++.+.+...++|.|| ++.+..
T Consensus 2 ~~~~~~Igvi~~~~~-~~~~~~~~~gi~~~a~~~---g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI-~~~~~~ 71 (280)
T 3gyb_A 2 SLRTQLIAVLIDDYS-NPWFIDLIQSLSDVLTPK---GYRLSVIDSLTSQAGTDPITSALSMRPDGII-IAQDIP 71 (280)
T ss_dssp --CCCEEEEEESCTT-SGGGHHHHHHHHHHHGGG---TCEEEEECSSSSCSSSCHHHHHHTTCCSEEE-EESCC-
T ss_pred CCccCEEEEEeCCCC-ChHHHHHHHHHHHHHHHC---CCEEEEEeCCCchHHHHHHHHHHhCCCCEEE-ecCCCC
Confidence 346678888875432 112223334444444443 4566555555444445667777778999999 887766
No 154
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=42.21 E-value=1.1e+02 Score=23.99 Aligned_cols=62 Identities=15% Similarity=0.172 Sum_probs=36.2
Q ss_pred CCCCCCCCeEEEEEcCCC--------CCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHc
Q 025520 40 AASSSRRRDLVFVVNPRG--------ASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKE 104 (251)
Q Consensus 40 ~~~~~~~~~i~vivNP~s--------g~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~ 104 (251)
++-..+++.+.+|+|-.. .+..+..-.+.+...|+.. ++++.++.--+..+..+.++++...
T Consensus 37 Y~m~~~~rG~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~L---gF~V~v~~dlt~~em~~~l~~~s~~ 106 (173)
T 2ql9_A 37 YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSL---GFDVIVYNDCSCAKMQDLLKKASEE 106 (173)
T ss_dssp CCCCSSEEEEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHH---TEEEEEEESCCHHHHHHHHHHHHTS
T ss_pred cccCCCCceEEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHHHC---CCEEEEEeCCCHHHHHHHHHHHHHh
Confidence 444556677888887541 1112233345566666654 3667666655667777777776643
No 155
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=42.19 E-value=1e+02 Score=26.52 Aligned_cols=75 Identities=9% Similarity=0.020 Sum_probs=38.9
Q ss_pred HHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCch-------HHHHHHHHHhCCcccccccccc
Q 025520 67 KKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGT-------LHEVVNGFFSAGKLVTNHNRES 139 (251)
Q Consensus 67 ~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGT-------l~~vln~l~~~~~~~~~~~~~~ 139 (251)
+...+.|... .+..++.+...+...++++. ..+-|+-||||. |.++++-.-. ...
T Consensus 87 ~DTarvls~~----~D~iviR~~~~~~~~~lA~~-----~~vPVINag~g~~~HPtQ~LaDl~Ti~e~---------~g~ 148 (306)
T 4ekn_B 87 IDTIRVISGY----ADIIVLRHPSEGAARLASEY-----SQVPIINAGDGSNQHPTQTLLDLYTIMRE---------IGR 148 (306)
T ss_dssp HHHHHHHHHH----CSEEEEECSSTTHHHHHHHH-----CSSCEEESCSSSSCCHHHHHHHHHHHHHH---------HSC
T ss_pred HHHHHHHHHh----CcEEEEEcCChHHHHHHHHh-----CCCCEEeCCCCCCcCcHHHHHHHHHHHHH---------hCC
Confidence 3344455554 24444555555555444432 345688999984 2233221111 012
Q ss_pred cCCceEEEecCCChhHHhhh
Q 025520 140 AHSTALGLIPLGTGSDFART 159 (251)
Q Consensus 140 ~~~~~lgilP~GTgN~fa~~ 159 (251)
...+.|+++--+.-|..+++
T Consensus 149 l~glkva~vGD~~~~rva~S 168 (306)
T 4ekn_B 149 IDGIKIAFVGDLKYGRTVHS 168 (306)
T ss_dssp STTCEEEEESCTTTCHHHHH
T ss_pred cCCCEEEEEcCCCCCcHHHH
Confidence 35788999877764445444
No 156
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=41.63 E-value=1.3e+02 Score=23.74 Aligned_cols=62 Identities=11% Similarity=0.040 Sum_probs=36.8
Q ss_pred CCCCCCCCCeEEEEEcCCC--------CCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHH
Q 025520 39 GAASSSRRRDLVFVVNPRG--------ASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIK 103 (251)
Q Consensus 39 ~~~~~~~~~~i~vivNP~s--------g~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~ 103 (251)
.+.-..+++.+.+|+|-.. .+..+..-.+.+...|+.. ++++.++.--...+..+.++++..
T Consensus 36 ~Y~m~~~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~L---GF~V~~~~dlt~~em~~~l~~~~~ 105 (179)
T 3p45_A 36 KYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDL---GFEVKCFNDLKAEELLLKIHEVST 105 (179)
T ss_dssp BCCCCSSBCCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHT---TCEEEEEESCCHHHHHHHHHHHHT
T ss_pred cCCCCCCccCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCCHHHHHHHHHHHhh
Confidence 3455566777888876542 1111223345566667663 467776666666777777777654
No 157
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=41.31 E-value=50 Score=26.19 Aligned_cols=70 Identities=16% Similarity=0.126 Sum_probs=37.5
Q ss_pred CCCCeEEEEEc--CC-CCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCc
Q 025520 44 SRRRDLVFVVN--PR-GASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDG 116 (251)
Q Consensus 44 ~~~~~i~vivN--P~-sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDG 116 (251)
.+..++.||.- .. .|+ -+..-.-+...|++.. .......+..++++...+..+++..+++|+||+.||=|
T Consensus 28 ~~~~rvaIistGdEl~~G~--~Dsn~~~L~~~L~~~G-~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVIttGGts 100 (185)
T 3rfq_A 28 LVVGRALVVVVDDRTAHGD--EDHSGPLVTELLTEAG-FVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGTG 100 (185)
T ss_dssp -CCEEEEEEEECHHHHTTC--CCSHHHHHHHHHHHTT-EEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESCCS
T ss_pred CCCCEEEEEEECcccCCCC--cCcHHHHHHHHHHHCC-CEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 35556666663 22 233 2233333455666542 11222224455555566666665556799999999965
No 158
>4eys_A MCCC family protein; MCCF like, serine peptidase, csgid, structural genomics, NIA national institute of allergy and infectious diseases; HET: AMP; 1.58A {Streptococcus pneumoniae} PDB: 4e94_A*
Probab=41.05 E-value=89 Score=27.20 Aligned_cols=76 Identities=16% Similarity=0.097 Sum_probs=39.7
Q ss_pred CCeEEEEEcCCCCCCC---hhhHHHHHHHHHHhhcCCCccEEEEecCCcc----------HHHHHHHHHHHcCCCEEEE-
Q 025520 46 RRDLVFVVNPRGASGR---TGKEWKKLLPYLRSRLSVDCNICESLTSGPS----------HAIDITREAIKEGADAVIA- 111 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~---~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~----------~a~~~~~~~~~~~~d~ivv- 111 (251)
|..-.-|+.|.++-.. ....++..+..|++. ++++.+..+.... -+.++.+.+...+.+.|++
T Consensus 4 ~~D~I~ivaPSs~~~~~~~~~~~~~~~~~~L~~~---G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~ 80 (346)
T 4eys_A 4 MVSTIGIVSLSSGIIGEDFVKHEVDLGIQRLKDL---GLNPIFLPHSLKGLDFIKDHPEARAEDLIHAFSDDSIDMILCA 80 (346)
T ss_dssp CCCEEEEECSSCCGGGSGGGHHHHHHHHHHHHHT---TCEEEECTTTTSCHHHHHHCHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred cCcEEEEEeCCCcccccccCHHHHHHHHHHHHhC---CCEEEECCchhccCCccCCCHHHHHHHHHHHhhCCCCCEEEEc
Confidence 3445667888875321 133456666677764 3555443232221 2222222233356776665
Q ss_pred EeCCchHHHHHHHH
Q 025520 112 VGGDGTLHEVVNGF 125 (251)
Q Consensus 112 ~GGDGTl~~vln~l 125 (251)
.||+|+.. ++..|
T Consensus 81 rGG~g~~r-lLp~L 93 (346)
T 4eys_A 81 IGGDDTYR-LLPYL 93 (346)
T ss_dssp CCCSCGGG-GHHHH
T ss_pred ccccCHHH-HHHHh
Confidence 59999865 44444
No 159
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=40.99 E-value=56 Score=25.04 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=21.1
Q ss_pred EecCCccHHHHHHHHHHHc-CCCEEEEEeCCc
Q 025520 86 SLTSGPSHAIDITREAIKE-GADAVIAVGGDG 116 (251)
Q Consensus 86 ~~t~~~~~a~~~~~~~~~~-~~d~ivv~GGDG 116 (251)
+..++.+...+..+++..+ ++|+||+.||=|
T Consensus 42 iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g 73 (164)
T 2is8_A 42 LVPDEPPMIKKVLRLWADREGLDLILTNGGTG 73 (164)
T ss_dssp EECSCHHHHHHHHHHHHHTSCCSEEEEESCCS
T ss_pred EcCCCHHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence 4455555566666666554 799999999954
No 160
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=40.84 E-value=1.5e+02 Score=24.47 Aligned_cols=80 Identities=18% Similarity=0.061 Sum_probs=41.5
Q ss_pred CCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEE--ecC---CccHHHHHHHHHHHcCCCEEEEEeCCch
Q 025520 43 SSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICES--LTS---GPSHAIDITREAIKEGADAVIAVGGDGT 117 (251)
Q Consensus 43 ~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~--~t~---~~~~a~~~~~~~~~~~~d~ivv~GGDGT 117 (251)
..+.+.+.+++.....+.-.....+.++..++.. ++++.+. .+. +.....+..+.+...++|.||+ .+|..
T Consensus 40 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~---g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi-~~~~~ 115 (342)
T 1jx6_A 40 TQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKL---NINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIF-TLDTT 115 (342)
T ss_dssp CSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHT---TCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEE-CCSSS
T ss_pred cCCceEEEEEecCCcccHHHHHHHHHHHHHHHHc---CCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEE-eCChH
Confidence 3455677777743111111122223333444432 3444443 343 3333445667777788999998 56654
Q ss_pred -HHHHHHHHH
Q 025520 118 -LHEVVNGFF 126 (251)
Q Consensus 118 -l~~vln~l~ 126 (251)
..+.+..+.
T Consensus 116 ~~~~~~~~~~ 125 (342)
T 1jx6_A 116 RHRKFVEHVL 125 (342)
T ss_dssp TTHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 356666664
No 161
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=40.77 E-value=95 Score=22.01 Aligned_cols=69 Identities=7% Similarity=0.174 Sum_probs=43.7
Q ss_pred eEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHH-cCCCEEEEEeCCchHHHHHHHHH
Q 025520 48 DLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIK-EGADAVIAVGGDGTLHEVVNGFF 126 (251)
Q Consensus 48 ~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~-~~~d~ivv~GGDGTl~~vln~l~ 126 (251)
+++|++|... +...+++.+..... ++++ ......++.+.-+++++. .++..|+++..|--+..-+-.|+
T Consensus 2 kililintnn-----delikkikkevenq---gyqv--rdvndsdelkkemkklaeeknfekiliisndkqllkemleli 71 (134)
T 2lci_A 2 KILILINTNN-----DELIKKIKKEVENQ---GYQV--RDVNDSDELKKEMKKLAEEKNFEKILIISNDKQLLKEMLELI 71 (134)
T ss_dssp CCEEEEECSC-----HHHHHHHHHHTTTT---TCEE--EEECSHHHHHHHHHHHHHCCSCCCEEEEESCHHHHHHHHHHH
T ss_pred eEEEEEcCCc-----HHHHHHHHHHHHcc---Ceee--eecCchHHHHHHHHHHHhhcCcceEEEEcCcHHHHHHHHHHH
Confidence 5788999642 45566665555442 3554 455566677766777664 46788999999987654333343
No 162
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=40.37 E-value=1.6e+02 Score=24.49 Aligned_cols=69 Identities=1% Similarity=0.020 Sum_probs=37.9
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCch
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGT 117 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGT 117 (251)
.+.+.+.+++.-.. ...|..+..-++..+. .++++.+..+.. .....+..+.+...+.|.||+.+.+.+
T Consensus 56 ~~~~~Igvi~~~~~-----~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 126 (340)
T 1qpz_A 56 NHTKSIGLLATSSE-----AAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYP 126 (340)
T ss_dssp TCCSEEEEEESCSC-----SHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCCC
T ss_pred CCCCEEEEEeCCCC-----ChHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 45567888874321 2344444333332211 235554444432 233345566777788999999987754
No 163
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=40.22 E-value=51 Score=27.03 Aligned_cols=83 Identities=7% Similarity=0.041 Sum_probs=42.1
Q ss_pred CCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecCCc-cHHHHHHHHHHHcCCCEEEEEeCCchHHH
Q 025520 43 SSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSGP-SHAIDITREAIKEGADAVIAVGGDGTLHE 120 (251)
Q Consensus 43 ~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~~~-~~a~~~~~~~~~~~~d~ivv~GGDGTl~~ 120 (251)
+++.+.|.||+............|..+..-++..+. .++++.+..+... ....++.+.+...+.|.||+++.+.+ .+
T Consensus 4 ~~~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~-~~ 82 (295)
T 3hcw_A 4 TNQTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKEN-DP 82 (295)
T ss_dssp CCCSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTT-CH
T ss_pred CCCCcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcccC-hH
Confidence 456778888873110000112344444443333321 2355544333322 22334555666778999999987754 24
Q ss_pred HHHHHH
Q 025520 121 VVNGFF 126 (251)
Q Consensus 121 vln~l~ 126 (251)
.+..+.
T Consensus 83 ~~~~l~ 88 (295)
T 3hcw_A 83 IKQMLI 88 (295)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 164
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=40.18 E-value=55 Score=26.21 Aligned_cols=45 Identities=31% Similarity=0.500 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecC
Q 025520 93 HAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPL 150 (251)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~ 150 (251)
.+.++.+.+.+.++. ||..|+-|--..+..+.+..+ ...+|+||.
T Consensus 46 ~A~~lg~~LA~~G~~-vVsGg~~GiM~aa~~gAl~~G------------G~~iGVlP~ 90 (195)
T 1rcu_A 46 ICLELGRTLAKKGYL-VFNGGRDGVMELVSQGVREAG------------GTVVGILPD 90 (195)
T ss_dssp HHHHHHHHHHHTTCE-EEECCSSHHHHHHHHHHHHTT------------CCEEEEEST
T ss_pred HHHHHHHHHHHCCCE-EEeCCHHHHHHHHHHHHHHcC------------CcEEEEeCC
Confidence 456666777766653 334456666666666666533 468888886
No 165
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=40.16 E-value=1.3e+02 Score=24.23 Aligned_cols=80 Identities=11% Similarity=-0.008 Sum_probs=42.9
Q ss_pred CCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecCCc-cHHHHHHHHHHHcCCCEEEEEeCCchHHH
Q 025520 43 SSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSGP-SHAIDITREAIKEGADAVIAVGGDGTLHE 120 (251)
Q Consensus 43 ~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~~~-~~a~~~~~~~~~~~~d~ivv~GGDGTl~~ 120 (251)
+++.+.|.|++...... ...|.++...+++.+. .++++.+..+... ....++.+.+...+.|.||+.+.+.+- +
T Consensus 5 ~~~s~~Igvv~~~~~~~---~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~ 80 (288)
T 3gv0_A 5 TGKTNVIALVLSVDEEL---MGFTSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIEPND-P 80 (288)
T ss_dssp --CCCEEEEECBCCCCS---SCHHHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCTTC-H
T ss_pred cCCCCEEEEEecCCccc---cHHHHHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCCCCc-H
Confidence 45667788888644321 1355555554444332 2455554444332 223344444556789999999876542 5
Q ss_pred HHHHHH
Q 025520 121 VVNGFF 126 (251)
Q Consensus 121 vln~l~ 126 (251)
.+..+.
T Consensus 81 ~~~~l~ 86 (288)
T 3gv0_A 81 RVRFMT 86 (288)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 556554
No 166
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=39.93 E-value=26 Score=30.78 Aligned_cols=33 Identities=18% Similarity=0.408 Sum_probs=27.1
Q ss_pred CCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecC
Q 025520 105 GADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPL 150 (251)
Q Consensus 105 ~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~ 150 (251)
++|.||.+|| |++.++...+.. ...+|+..||.
T Consensus 94 ~~d~IIavGG-Gsv~D~aK~iA~------------~~~~p~i~IPT 126 (376)
T 1kq3_A 94 ETDVVVGIGG-GKTLDTAKAVAY------------KLKKPVVIVPT 126 (376)
T ss_dssp TCCEEEEEES-HHHHHHHHHHHH------------HTTCCEEEEES
T ss_pred CCCEEEEeCC-cHHHHHHHHHHH------------hcCCCEEEecC
Confidence 8899999998 899999988763 23688888886
No 167
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=39.90 E-value=45 Score=25.67 Aligned_cols=31 Identities=29% Similarity=0.567 Sum_probs=21.6
Q ss_pred EecCCccHHHHHHHHHHHcCCCEEEEEeCCc
Q 025520 86 SLTSGPSHAIDITREAIKEGADAVIAVGGDG 116 (251)
Q Consensus 86 ~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDG 116 (251)
+..++++...+..+++..+++|.|++.||=|
T Consensus 50 iv~Dd~~~I~~~l~~a~~~~~DlVittGG~g 80 (167)
T 2g2c_A 50 VVPEGYDTVVEAIATALKQGARFIITAGGTG 80 (167)
T ss_dssp EECSSHHHHHHHHHHHHHTTCSEEEEESCCS
T ss_pred EeCCCHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 4445555566666666654699999999966
No 168
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Probab=39.44 E-value=1.3e+02 Score=23.55 Aligned_cols=100 Identities=14% Similarity=0.087 Sum_probs=56.3
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHH------cCCCEEEEEe----C
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIK------EGADAVIAVG----G 114 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~------~~~d~ivv~G----G 114 (251)
...++.|++-.-. ..-.+..++..+..|+.+.-...++.++.....-|.--.++++.+ .++|.||++| |
T Consensus 15 ~~~ri~IV~arfn-~~I~~~Ll~gA~~~L~~~Gv~~~~i~v~~VPGafEiP~aak~la~~~~~~~~~yDavIaLG~VIrG 93 (168)
T 1ejb_A 15 SKIRVGIIHARWN-RVIIDALVKGAIERMASLGVEENNIIIETVPGSYELPWGTKRFVDRQAKLGKPLDVVIPIGVLIKG 93 (168)
T ss_dssp TTCCEEEEECCTT-HHHHHHHHHHHHHHHHHTTCCGGGEEEEECSSGGGHHHHHHHHHHHHHHTTCCCSEEEEEEEEECC
T ss_pred CCCEEEEEEEeCc-HHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhhccccCCCcCEEEEecccccC
Confidence 4467888775321 111123344445566665322235666666666677666777664 4799999988 5
Q ss_pred CchH-----HHHHHHHHhCCcccccccccccCCceEEEecCCC
Q 025520 115 DGTL-----HEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGT 152 (251)
Q Consensus 115 DGTl-----~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GT 152 (251)
+-.= +++..+|.+-. -+....+..|+|+.-|
T Consensus 94 ~T~Hfd~Va~~vs~Gl~~vs-------L~~~vPV~~GVLT~~~ 129 (168)
T 1ejb_A 94 STMHFEYISDSTTHALMNLQ-------EKVDMPVIFGLLTCMT 129 (168)
T ss_dssp SSSHHHHHHHHHHHHHHHHH-------HHHTSCBCCEEEEESS
T ss_pred CchHHHHHHHHHHHHHHHHH-------hhcCCCEEEEEecCCC
Confidence 5433 45556665421 1234456678885544
No 169
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=39.33 E-value=1.5e+02 Score=23.83 Aligned_cols=75 Identities=9% Similarity=0.092 Sum_probs=39.3
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCch-HHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGT-LHEVVN 123 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGT-l~~vln 123 (251)
+.+.|++.- .. ..+|..+..-++..+. .++++.+..+.. +....+..+.+...+.|.||+.+.|.+ +.+.+.
T Consensus 2 ~~Igvi~~~-~~----~~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 76 (283)
T 2ioy_A 2 KTIGLVIST-LN----NPFFVTLKNGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIK 76 (283)
T ss_dssp CEEEEEESC-SS----SHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHH
T ss_pred eEEEEEecC-CC----CHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhHHHHH
Confidence 456666632 21 2344444443333221 135554444432 233345566777788999999887654 335566
Q ss_pred HHH
Q 025520 124 GFF 126 (251)
Q Consensus 124 ~l~ 126 (251)
.+.
T Consensus 77 ~~~ 79 (283)
T 2ioy_A 77 EAN 79 (283)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 170
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=38.26 E-value=1.7e+02 Score=24.23 Aligned_cols=77 Identities=10% Similarity=0.037 Sum_probs=43.3
Q ss_pred CCCCCeEEEEEcCCCCCCChhhHHHHH----HHHHHhhcCCCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCch
Q 025520 43 SSRRRDLVFVVNPRGASGRTGKEWKKL----LPYLRSRLSVDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGT 117 (251)
Q Consensus 43 ~~~~~~i~vivNP~sg~g~~~~~~~~i----~~~L~~~~~~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGT 117 (251)
+.+.+.+.+++.... ....+|..+ +..+++. ++++.+..+.. .+...+..+.+...+.|.||+.+.+.+
T Consensus 58 ~~~~~~Igvi~~~~~---~~~~~~~~~~~gi~~~a~~~---g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~ 131 (338)
T 3dbi_A 58 AKSTQTLGLVVTNTL---YHGIYFSELLFHAARMAEEK---GRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLS 131 (338)
T ss_dssp --CCSEEEEEECTTT---TSTTHHHHHHHHHHHHHHHT---TCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSSSC
T ss_pred hCCCCEEEEEecCCc---ccChhHHHHHHHHHHHHHHC---CCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 446678888886411 112344444 3444442 45555554433 233344667777789999999998877
Q ss_pred HHHHHHHH
Q 025520 118 LHEVVNGF 125 (251)
Q Consensus 118 l~~vln~l 125 (251)
-..+...+
T Consensus 132 ~~~~~~~~ 139 (338)
T 3dbi_A 132 VDEIDDII 139 (338)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 55455444
No 171
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A {Rhodobacter capsulatus} PDB: 3nei_A
Probab=38.05 E-value=1.3e+02 Score=24.93 Aligned_cols=55 Identities=22% Similarity=0.231 Sum_probs=35.1
Q ss_pred HHHHHHHHcCCCEEEEEeCC----chHHHHHHHHHhCCcccccccccccCCceEEEecCCCh-hHHhhhcCCC
Q 025520 96 DITREAIKEGADAVIAVGGD----GTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTG-SDFARTFGWR 163 (251)
Q Consensus 96 ~~~~~~~~~~~d~ivv~GGD----GTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTg-N~fa~~lg~~ 163 (251)
+.+.+...++-+++++.+|| |+..+.+..+.. ..+++-++|+=|. ...+-.+|+|
T Consensus 67 ~~i~~~~~~G~~Va~L~~GDP~iyg~~~~l~~~l~~-------------~gi~veviPGiSs~~aaaA~lG~p 126 (264)
T 3ndc_A 67 DTIAEAHAAGQDVARLHSGDLSIWSAMGEQLRRLRA-------------LNIPYDVTPGVPSFAAAAATLGAE 126 (264)
T ss_dssp HHHHHHHHHTCCEEEEESBCTTSSCSHHHHHHHHHH-------------TTCCEEEECCCCHHHHHHHHHTCC
T ss_pred HHHHHHHHCCCeEEEEeCCCCccccHHHHHHHHHHh-------------CCCCEEEeCCHHHHHHHHHHhCCC
Confidence 33444445678899999999 666777776643 2467777777665 3344445554
No 172
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=37.44 E-value=36 Score=27.63 Aligned_cols=73 Identities=10% Similarity=-0.030 Sum_probs=37.4
Q ss_pred CCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecC-CccHHHHHHHHHHHcCCCEEEEEeCCchH
Q 025520 43 SSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTS-GPSHAIDITREAIKEGADAVIAVGGDGTL 118 (251)
Q Consensus 43 ~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGTl 118 (251)
+.+.+.|.|++.......-....++.++..+++. ++++.+..+. +.....++.+.+...+.|.||+.+-|.+-
T Consensus 8 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~---g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~ 81 (289)
T 3g85_A 8 SQSKPTIALYWSSDISVNIISRFLRGLQSKLAKQ---NYNYNVVICPYKTDCLHLEKGISKENSFDAAIIANISNYD 81 (289)
T ss_dssp ---CCEEEEEEETTSCGGGHHHHHHHHHHHHHHT---TTCSEEEEEEECTTCGGGCGGGSTTTCCSEEEESSCCHHH
T ss_pred cCCCceEEEEeccccchHHHHHHHHHHHHHHHHc---CCeEEEEecCCCchhHHHHHHHHhccCCCEEEEecCCccc
Confidence 4566788888862222222223333444444443 3444333322 23333344555556789999999887664
No 173
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=37.37 E-value=1.7e+02 Score=23.93 Aligned_cols=71 Identities=17% Similarity=0.166 Sum_probs=33.1
Q ss_pred EEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCC----ccHH----------HHHHHHHHHcCCCEEE-EEeC
Q 025520 50 VFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSG----PSHA----------IDITREAIKEGADAVI-AVGG 114 (251)
Q Consensus 50 ~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~----~~~a----------~~~~~~~~~~~~d~iv-v~GG 114 (251)
.+++||.+-. ..-+.+...++.....+.++..+.... .++. .+.++++...++|.|| .|-.
T Consensus 4 ilvINPnts~----~~T~~i~~~~~~~~~p~~~i~~~t~~~gp~~i~~~~d~~~a~~~l~~~~~~l~~~g~d~iviaCnt 79 (245)
T 3qvl_A 4 IQVINPNTSL----AMTETIGAAARAVAAPGTEILAVCPRAGVPSIEGHFDEAIAAVGVLEQIRAGREQGVDGHVIASFG 79 (245)
T ss_dssp EEEECSSCCH----HHHHHHHHHHHHHCCTTEEEEEECCSSSCSSCCSHHHHHHHHHHHHHHHHHHHHHTCSEEEEC-CC
T ss_pred EEEEeCCCCH----HHHHHHHHHHHHhcCCCCEEEEEeCCCCchhhcChhHHHHHHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 5688998732 222344555555443344443322111 1111 1222233456898655 4666
Q ss_pred CchHHHHHHHH
Q 025520 115 DGTLHEVVNGF 125 (251)
Q Consensus 115 DGTl~~vln~l 125 (251)
|-.+ +.+...
T Consensus 80 ~~~l-~~lr~~ 89 (245)
T 3qvl_A 80 DPGL-LAAREL 89 (245)
T ss_dssp CTTH-HHHHHH
T ss_pred hhHH-HHHHHH
Confidence 6665 444443
No 174
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=37.16 E-value=1.2e+02 Score=25.47 Aligned_cols=113 Identities=15% Similarity=0.201 Sum_probs=64.5
Q ss_pred CCCCCCCCCeEEEEEcCCCC--------CCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHc---CCC
Q 025520 39 GAASSSRRRDLVFVVNPRGA--------SGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKE---GAD 107 (251)
Q Consensus 39 ~~~~~~~~~~i~vivNP~sg--------~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~---~~d 107 (251)
.+.-..+++.+.+|+|-..= ...+..-.+.+...|+.. ++++.++.--...+..+.++++.+. ..|
T Consensus 36 ~Y~m~~~~rg~aLIInN~~F~~~~~l~~R~Gt~~D~~~L~~~f~~L---GF~V~~~~dlt~~em~~~l~~f~~~dh~~~d 112 (277)
T 4ehd_A 36 SYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNL---KYEVRNKNDLTREEIVELMRDVSKEDHSKRS 112 (277)
T ss_dssp BCCCCSSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHT---TCEEEEEESCCHHHHHHHHHHHHTSCCTTEE
T ss_pred cccCCCCCCCEEEEEEchhcCCcCCCCCCCCCHHHHHHHHHHHHHC---CCEEEEecCCCHHHHHHHHHHHHhhcccCCC
Confidence 35556677889888874321 111233345566677664 4677666666677788888887653 233
Q ss_pred EEE-----------EEeCCch--HHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhhc
Q 025520 108 AVI-----------AVGGDGT--LHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTF 160 (251)
Q Consensus 108 ~iv-----------v~GGDGT--l~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~l 160 (251)
.+| +.|=||. |.++++.+-... + .....++-|-+|-+--||.+.+.+
T Consensus 113 ~~vv~ilSHG~~g~i~g~D~~v~l~~I~~~f~~~~----C--psL~gKPKlffiQACRG~~~~~g~ 172 (277)
T 4ehd_A 113 SFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDR----C--RSLTGKPKLFIIQACRGTELDCGI 172 (277)
T ss_dssp EEEEEEESCEETTEEEETTEEEEHHHHHHTTSTTT----C--GGGTTSCEEEEEESCCSSBCBCCC
T ss_pred EEEEEEEcCCCCCEEEEeCCcEeHHHHHHHhhhcc----C--chhcCCccEEEEecCCCCcccCCc
Confidence 222 3455654 334443332110 0 123456789999999999876644
No 175
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=37.07 E-value=1.8e+02 Score=24.14 Aligned_cols=79 Identities=9% Similarity=0.082 Sum_probs=43.8
Q ss_pred CCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 43 SSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 43 ~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
+.+.+.+.+++...+. .-....++.++..+++. ++++.+..+.. .....++.+.+...+.|.||+.+-+.+- +.
T Consensus 59 ~~~~~~Igvi~~~~~~-~~~~~~~~gi~~~a~~~---g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-~~ 133 (339)
T 3h5o_A 59 SAKSRTVLVLIPSLAN-TVFLETLTGIETVLDAA---GYQMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGLSHAE-PF 133 (339)
T ss_dssp ----CEEEEEESCSTT-CTTHHHHHHHHHHHHHT---TCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCCT-TH
T ss_pred cCCCCEEEEEeCCCCC-HHHHHHHHHHHHHHHHC---CCEEEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCCCCCH-HH
Confidence 3455678888754432 22234445555555553 45655544443 3344456667777899999999876553 44
Q ss_pred HHHHH
Q 025520 122 VNGFF 126 (251)
Q Consensus 122 ln~l~ 126 (251)
+..+.
T Consensus 134 ~~~l~ 138 (339)
T 3h5o_A 134 ERILS 138 (339)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 45443
No 176
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=36.95 E-value=70 Score=26.39 Aligned_cols=71 Identities=13% Similarity=-0.025 Sum_probs=36.3
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHH---HHHc-CCCEEE-EEeCCchHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITRE---AIKE-GADAVI-AVGGDGTLH 119 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~---~~~~-~~d~iv-v~GGDGTl~ 119 (251)
+..+++++. |.....+..+-++.+...|... + ..++.++..+ +.+..+.+.+ .... ..++++ +.||-..++
T Consensus 33 ~~d~ViLv~-~~~~~~~~~~A~~~i~~~l~~~-~-~i~~e~~~vd-~~df~~~v~~i~~~i~~~~~~iivnlsGG~Ril~ 108 (244)
T 2wte_A 33 KEDSLVIVV-PSPIVSGTRAAIESLRAQISRL-N-YPPPRIYEIE-ITDFNLALSKILDIILTLPEPIISDLTMGMRMIN 108 (244)
T ss_dssp TTSEEEEEE-ESSCCHHHHHHHHHHHHHHHHH-T-CCCEEEEEEC-CCSHHHHHHHHHHHHTTSCSSEEEECSSSCHHHH
T ss_pred CCCEEEEEe-CCCcchhHHHHHHHHHHHHHHc-C-CCceEEEEEC-CccHHHHHHHHHHHHhhcCCcEEEEecCCchHHH
Confidence 344555555 4332345566677777777765 2 1233333332 2334444333 3222 226666 789998763
No 177
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=36.93 E-value=1.5e+02 Score=23.16 Aligned_cols=53 Identities=6% Similarity=-0.024 Sum_probs=30.9
Q ss_pred CeEEEEEcCCC-----CCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHH
Q 025520 47 RDLVFVVNPRG-----ASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAI 102 (251)
Q Consensus 47 ~~i~vivNP~s-----g~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~ 102 (251)
+++.+|+|-.. ....+..-.+.+...|+.. ++++.++.--+..+..+.++++.
T Consensus 43 ~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~L---gF~V~~~~dlt~~em~~~l~~f~ 100 (178)
T 2h54_A 43 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNL---GYSVDVKKNLTASDMTTELEAFA 100 (178)
T ss_dssp CCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHT---TCEEEEEESCCHHHHHHHHHHHH
T ss_pred CCEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHC---CCEEEEecCCCHHHHHHHHHHHH
Confidence 56666665442 1122233345566677664 46676665556677777777765
No 178
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1
Probab=36.91 E-value=51 Score=25.64 Aligned_cols=45 Identities=16% Similarity=0.255 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecC
Q 025520 93 HAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPL 150 (251)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~ 150 (251)
.+.++.+.+.+.++ .||..||.|--..+..+.++.+ ...+|++|-
T Consensus 21 ~A~~lg~~La~~g~-~lV~Ggg~GiM~aa~~gAl~~g------------G~tiGV~~~ 65 (171)
T 1weh_A 21 RWVRYGEVLAEEGF-GLACGGYQGGMEALARGVKAKG------------GLVVGVTAP 65 (171)
T ss_dssp HHHHHHHHHHHTTE-EEEECCSSTHHHHHHHHHHHTT------------CCEEECCCG
T ss_pred HHHHHHHHHHHCCC-EEEeCChhhHHHHHHHHHHHcC------------CcEEEEecc
Confidence 45566666666554 5666677787777777777543 467888654
No 179
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=36.37 E-value=76 Score=24.62 Aligned_cols=60 Identities=17% Similarity=0.158 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHhhcCCCccEEEE-ecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHH
Q 025520 64 KEWKKLLPYLRSRLSVDCNICES-LTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFF 126 (251)
Q Consensus 64 ~~~~~i~~~L~~~~~~~~~~~~~-~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~ 126 (251)
...++....|+.. +..+++.+. .-..++...++++++. .--.|.++|+.+-|--++.++.
T Consensus 13 ~v~~~a~~~l~~~-gi~~dv~V~saHR~p~~~~~~~~~a~--~~ViIa~AG~aa~Lpgvva~~t 73 (157)
T 2ywx_A 13 KIAEKAVNILKEF-GVEFEVRVASAHRTPELVEEIVKNSK--ADVFIAIAGLAAHLPGVVASLT 73 (157)
T ss_dssp HHHHHHHHHHHHT-TCCEEEEECCTTTCHHHHHHHHHHCC--CSEEEEEEESSCCHHHHHHTTC
T ss_pred HHHHHHHHHHHHc-CCCeEEEEEcccCCHHHHHHHHHhcC--CCEEEEEcCchhhhHHHHHhcc
Confidence 3455666677754 333444442 2223455555554432 2227788999999999999874
No 180
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=35.98 E-value=1.7e+02 Score=23.54 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=23.3
Q ss_pred cHHHHHHHHHHHcCCCEEEEEeCCch-HHHHHHHHH
Q 025520 92 SHAIDITREAIKEGADAVIAVGGDGT-LHEVVNGFF 126 (251)
Q Consensus 92 ~~a~~~~~~~~~~~~d~ivv~GGDGT-l~~vln~l~ 126 (251)
....+.++.+...+.|.|++.+.|.. +...+..+.
T Consensus 48 ~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~ 83 (303)
T 3d02_A 48 PQQVKIIEDLIARKVDAITIVPNDANVLEPVFKKAR 83 (303)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHH
Confidence 33445567777788999999888764 334555554
No 181
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=35.42 E-value=1.8e+02 Score=23.71 Aligned_cols=76 Identities=12% Similarity=0.074 Sum_probs=43.3
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecC------------CccHHHHHHHHHHHcCCCEEEEEe
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTS------------GPSHAIDITREAIKEGADAVIAVG 113 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~------------~~~~a~~~~~~~~~~~~d~ivv~G 113 (251)
+++-.+++.--|....+...+..+...+++.+. ...+..-.++ ..-...+.++++..++++.|+|+=
T Consensus 8 ~~~aillv~hGS~~~~~~~~~~~~~~~l~~~~~-~~~V~~af~~~~i~~~l~~~~~~~P~i~~al~~l~~~G~~~ivV~P 86 (269)
T 2xvy_A 8 QKTGILLVAFGTSVEEARPALDKMGDRVRAAHP-DIPVRWAYTAKMIRAKLRAEGIAAPSPAEALAGMAEEGFTHVAVQS 86 (269)
T ss_dssp CCEEEEEEECCCCCTTTTHHHHHHHHHHHHHCT-TSCEEEEESCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCceEEEEeCCCCcHHHHHHHHHHHHHHHHHCC-CCeEEeehhhHHHHHHHHHcCCCCCCHHHHHHHHHHCCCCEEEEEe
Confidence 445555554444344455567777778887653 3455443343 334556667778888888776643
Q ss_pred ---CCchHHHHH
Q 025520 114 ---GDGTLHEVV 122 (251)
Q Consensus 114 ---GDGTl~~vl 122 (251)
..|+..+-+
T Consensus 87 l~l~~G~~~~di 98 (269)
T 2xvy_A 87 LHTIPGEEFHGL 98 (269)
T ss_dssp CCSSSSHHHHHH
T ss_pred ceeeccHhHHHH
Confidence 245544433
No 182
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=34.69 E-value=95 Score=24.24 Aligned_cols=58 Identities=16% Similarity=0.019 Sum_probs=32.0
Q ss_pred HHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCc-----hHHHHHHHHH
Q 025520 67 KKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDG-----TLHEVVNGFF 126 (251)
Q Consensus 67 ~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDG-----Tl~~vln~l~ 126 (251)
..+...|.+.. .......+..++++...+..+++.. ++|+|++.||=| -..+++..++
T Consensus 26 ~~l~~~L~~~G-~~v~~~~iv~Dd~~~I~~~l~~a~~-~~DlVittGG~g~~~~D~T~ea~a~~~ 88 (172)
T 3kbq_A 26 AFIGNFLTYHG-YQVRRGFVVMDDLDEIGWAFRVALE-VSDLVVSSGGLGPTFDDMTVEGFAKCI 88 (172)
T ss_dssp HHHHHHHHHTT-CEEEEEEEECSCHHHHHHHHHHHHH-HCSEEEEESCCSSSTTCCHHHHHHHHH
T ss_pred HHHHHHHHHCC-CEEEEEEEeCCCHHHHHHHHHHHHh-cCCEEEEcCCCcCCcccchHHHHHHHc
Confidence 33555666642 2222222445555566666666554 499999999855 2344554444
No 183
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=33.62 E-value=1.1e+02 Score=25.71 Aligned_cols=79 Identities=9% Similarity=0.001 Sum_probs=46.6
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEE--EEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNIC--ESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~--~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
..+++.+|.... ..+....+.+...+++. +.++. ........+....++++...++|+|++.+-......++
T Consensus 139 g~~~vaii~~~~---~~g~~~~~~~~~~~~~~---G~~v~~~~~~~~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~ 212 (375)
T 3i09_A 139 GGKTWFFLTADY---AFGKALEKNTADVVKAN---GGKVLGEVRHPLSASDFSSFLLQAQSSKAQILGLANAGGDTVNAI 212 (375)
T ss_dssp TCCEEEEEEESS---HHHHHHHHHHHHHHHHT---TCEEEEEEEECTTCSCCHHHHHHHHHTCCSEEEEECCHHHHHHHH
T ss_pred CCceEEEEeccc---HHHHHHHHHHHHHHHHc---CCEEeeeeeCCCCCccHHHHHHHHHhCCCCEEEEecCchhHHHHH
Confidence 578898886422 12234445566666664 23332 22222344566677777778899888765544666777
Q ss_pred HHHHhCC
Q 025520 123 NGFFSAG 129 (251)
Q Consensus 123 n~l~~~~ 129 (251)
..+...+
T Consensus 213 ~~~~~~g 219 (375)
T 3i09_A 213 KAAKEFG 219 (375)
T ss_dssp HHHHHTT
T ss_pred HHHHHcC
Confidence 7776543
No 184
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=33.55 E-value=1.6e+02 Score=22.58 Aligned_cols=101 Identities=17% Similarity=0.109 Sum_probs=56.2
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHH-cCCCEEEEEe----CCch--
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIK-EGADAVIAVG----GDGT-- 117 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~-~~~d~ivv~G----GDGT-- 117 (251)
+..++.|+.-.-. ..-.++.++..+..|+.+.....++.++.....-+.--.++++.+ .++|.||++| |+-.
T Consensus 11 ~~~ri~IV~arfn-~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hf 89 (154)
T 1rvv_A 11 TGLKIGIVVGRFN-DFITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAETKKYDAIITLGTVIRGATTHY 89 (154)
T ss_dssp TTCCEEEEEESTT-HHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHHTSCCSEEEEEEEEECCSSSHH
T ss_pred CCCEEEEEEEeCc-HHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeeeecCCchHH
Confidence 3456777775321 111123344445566665322235666666666777777777764 5799999988 5443
Q ss_pred ---HHHHHHHHHhCCcccccccccccCCceEEEecCCCh
Q 025520 118 ---LHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTG 153 (251)
Q Consensus 118 ---l~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTg 153 (251)
-+++..+|.+-. -+....+..|+|...|-
T Consensus 90 d~V~~~vs~Gl~~v~-------l~~~vPV~~GVLT~~~~ 121 (154)
T 1rvv_A 90 DYVCNEAAKGIAQAA-------NTTGVPVIFGIVTTENI 121 (154)
T ss_dssp HHHHHHHHHHHHHHH-------HHHCSCEEEEEEEESSH
T ss_pred HHHHHHHHHHHHHHH-------hhhCCCEEEEecCCCCH
Confidence 345556665421 12233455666666543
No 185
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.49A {Clostridium difficile}
Probab=33.52 E-value=1.3e+02 Score=24.49 Aligned_cols=55 Identities=24% Similarity=0.316 Sum_probs=36.5
Q ss_pred HHHHHHHHcCCCEEEEEeCC----chHHHHHHHHHhCCcccccccccccCCceEEEecCCCh-hHHhhhcCCC
Q 025520 96 DITREAIKEGADAVIAVGGD----GTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTG-SDFARTFGWR 163 (251)
Q Consensus 96 ~~~~~~~~~~~d~ivv~GGD----GTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTg-N~fa~~lg~~ 163 (251)
+.+.+..+++-+++++.+|| |+..+.+..+.. ..+++-++|+=|. ...+-.+|+|
T Consensus 68 ~~i~~~~~~g~~V~~l~~GDP~i~~~~~~l~~~l~~-------------~gi~veviPGiSS~~aa~a~~G~p 127 (253)
T 4e16_A 68 DVMREGIENNKSVVRLQTGDFSIYGSIREQVEDLNK-------------LNIDYDCTPGVSSFLGAASSLGVE 127 (253)
T ss_dssp HHHHHHHHTTCCEEEEESBCTTTTCCHHHHHHHHHH-------------HTCCEEEECCCCHHHHHHHHHTCC
T ss_pred HHHHHHHHCCCcEEEEeCCCCccccCHHHHHHHHHH-------------CCCCEEEECCHHHHHHHHHHhCCC
Confidence 33344445678899999999 666777766642 2467888888776 4444556665
No 186
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=33.37 E-value=1.6e+02 Score=24.19 Aligned_cols=112 Identities=16% Similarity=0.205 Sum_probs=63.1
Q ss_pred CCCCCCCCeEEEEEcCCCC--------CCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcC---CCE
Q 025520 40 AASSSRRRDLVFVVNPRGA--------SGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEG---ADA 108 (251)
Q Consensus 40 ~~~~~~~~~i~vivNP~sg--------~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~---~d~ 108 (251)
++-..+.+.+.+|+|-..= ...+..-.+.+...|+.. ++++.++.--+..+..+.++++.+.. +|.
T Consensus 9 Y~m~~~~rg~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~~L---gF~V~~~~dlt~~em~~~l~~~~~~~~~~~d~ 85 (250)
T 2j32_A 9 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNL---KYEVRNKNDLTREEIVELMRDVSKEDHSKRSS 85 (250)
T ss_dssp CCCCSSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHT---TCEEEEEESCCHHHHHHHHHHHHTSCCTTEEE
T ss_pred ccCCCCCccEEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCCHHHHHHHHHHHHHhhccCCCE
Confidence 3345566778888865321 122233345566677764 46776666566777888888876542 332
Q ss_pred -EEE----------EeCCc--hHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhhc
Q 025520 109 -VIA----------VGGDG--TLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTF 160 (251)
Q Consensus 109 -ivv----------~GGDG--Tl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~l 160 (251)
|++ .|=|| .|.++++.+-... + .....++-|-+|-+--||.+.+..
T Consensus 86 ~v~~~lsHG~~g~i~~~D~~v~l~~i~~~f~~~~----c--p~L~gKPKlf~iqACRg~~~~~g~ 144 (250)
T 2j32_A 86 FVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDR----C--RSLTGKPKLFIIQACRGTELDCGI 144 (250)
T ss_dssp EEEEEESCEETTEEEETTEEEEHHHHHHTTSTTT----C--GGGTTSCEEEEEESCSEEECBCCC
T ss_pred EEEEECCCCCCCeEEecCCcEEHHHHHHHhcccc----C--hhHcCCCeEEEEecccCCcccCCc
Confidence 222 22344 4555555442110 0 113456789999999999886543
No 187
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=33.18 E-value=2.3e+02 Score=24.21 Aligned_cols=77 Identities=5% Similarity=0.062 Sum_probs=47.4
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecC---CccHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTS---GPSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~---~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
..+++.+|++-.- + ....+.+...+++. +.++...... ...+...++.++...+.|+|++.+-......+
T Consensus 129 gw~~vaii~d~~~--g--~~~~~~~~~~~~~~---g~~v~~~~~~~~~~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~i 201 (389)
T 3o21_A 129 KWEKFVYLYDTER--G--FSVLQAIMEAAVQN---NWQVTARSVGNIKDVQEFRRIIEEMDRRQEKRYLIDCEVERINTI 201 (389)
T ss_dssp TCCEEEEEECSTT--C--SHHHHHHHHHHHHT---TCEEEEEECTTCCCTHHHHHHHHHHHTTTCCEEEEESCHHHHHHH
T ss_pred CCCEEEEEEcCcH--H--HHHHHHHHHHhhcC---CCeEEEEEecCCCCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHH
Confidence 6789999995322 2 23445555566553 2333322221 22367777888877788999887776677777
Q ss_pred HHHHHhC
Q 025520 122 VNGFFSA 128 (251)
Q Consensus 122 ln~l~~~ 128 (251)
+..+.+.
T Consensus 202 ~~qa~~~ 208 (389)
T 3o21_A 202 LEQVVIL 208 (389)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 7776543
No 188
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=33.04 E-value=1.6e+02 Score=22.71 Aligned_cols=101 Identities=18% Similarity=0.119 Sum_probs=55.9
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhc-CCCccEEEEecCCccHHHHHHHHHH-HcCCCEEEEEe----CCch-
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRL-SVDCNICESLTSGPSHAIDITREAI-KEGADAVIAVG----GDGT- 117 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~-~~~~~~~~~~t~~~~~a~~~~~~~~-~~~~d~ivv~G----GDGT- 117 (251)
...++.|+.-.-- ..-.++.++.....|+.+. -..-++.++.....-+.--.++++. ..++|.||++| |+-.
T Consensus 11 ~~~ri~IV~arfn-~~I~~~Ll~gA~~~l~~~G~v~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~H 89 (156)
T 3nq4_A 11 PDARVAITIARFN-QFINDSLLDGAVDALTRIGQVKDDNITVVWVPGAYELPLATEALAKSGKYDAVVALGTVIRGGTAH 89 (156)
T ss_dssp TTCCEEEEEESTT-HHHHHHHHHHHHHHHHHTTCCCTTSEEEEEESSTTTHHHHHHHHHHHCSCSEEEEEEEEECCSSTH
T ss_pred CCCEEEEEEeeCc-HHHHHHHHHHHHHHHHHcCCCcccceEEEEcCcHHHHHHHHHHHHhcCCCCEEEEeeeeecCCchH
Confidence 3457777774321 1111233444455666654 2123455666666667777777766 45799999998 6543
Q ss_pred ----HHHHHHHHHhCCcccccccccccCCceEEEecCCCh
Q 025520 118 ----LHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTG 153 (251)
Q Consensus 118 ----l~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTg 153 (251)
-+++..+|.+-. -+....+..|+|..-|-
T Consensus 90 fd~Va~~v~~Gl~~v~-------L~~~vPV~~GVLT~~~~ 122 (156)
T 3nq4_A 90 FEYVAGGASNGLASVA-------QDSGVPVAFGVLTTESI 122 (156)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHCCCEEEEEEEESCH
T ss_pred HHHHHHHHHHHHHHHH-------hccCCCEEEEEeCCCCH
Confidence 345556665421 12234455777766443
No 189
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=33.03 E-value=1.7e+02 Score=22.75 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=19.5
Q ss_pred CCeEEEEE-cCCCCCCChhhHHHHHHHHHHhh
Q 025520 46 RRDLVFVV-NPRGASGRTGKEWKKLLPYLRSR 76 (251)
Q Consensus 46 ~~~i~viv-NP~sg~g~~~~~~~~i~~~L~~~ 76 (251)
|+++++|. +|+..++.+.+..+.+...+++.
T Consensus 1 MmkiLii~gSpr~~~s~t~~l~~~~~~~~~~~ 32 (212)
T 3r6w_A 1 MSRILAVHASPRGERSQSRRLAEVFLAAYREA 32 (212)
T ss_dssp CCCEEEEECCSCSTTCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence 35666665 66653456667777777777664
No 190
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=32.99 E-value=1.5e+02 Score=22.76 Aligned_cols=100 Identities=19% Similarity=0.173 Sum_probs=55.9
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHH-cCCCEEEEEe----CCch--
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIK-EGADAVIAVG----GDGT-- 117 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~-~~~d~ivv~G----GDGT-- 117 (251)
+..++.|+.-.-. ..-.++.++..+..|+.+.....++.++.....-+.--.++++.+ .++|.||++| |+-.
T Consensus 11 ~~~ri~IV~arfn-~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIalG~VIrG~T~Hf 89 (154)
T 1hqk_A 11 EGLRFGIVASRFN-HALVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELARKEDIDAVIAIGVLIRGATPHF 89 (154)
T ss_dssp TTCCEEEEEECTT-HHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHTCTTCCEEEEEEEEECCSSTHH
T ss_pred CCCEEEEEEeeCc-HHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeeeecCCchHH
Confidence 3456777775321 111123444455566665322235666666667777777777764 4799999988 5443
Q ss_pred ---HHHHHHHHHhCCcccccccccccCCceEEEecCCC
Q 025520 118 ---LHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGT 152 (251)
Q Consensus 118 ---l~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GT 152 (251)
-+++..+|.+-. -+....+..|+|...|
T Consensus 90 d~Va~~vs~gl~~v~-------l~~~vPV~~GVLT~~~ 120 (154)
T 1hqk_A 90 DYIASEVSKGLANLS-------LELRKPITFGVITADT 120 (154)
T ss_dssp HHHHHHHHHHHHHHH-------HHHTSCEEEEEEEESS
T ss_pred HHHHHHHHHHHHHHH-------hhcCCCEEEEEeCCCC
Confidence 345556665421 1223345566666654
No 191
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=32.85 E-value=73 Score=25.75 Aligned_cols=68 Identities=12% Similarity=0.190 Sum_probs=37.6
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCch
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGT 117 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGT 117 (251)
++.+.+.+++.- . ...|..+..-++..+. .++++.+..+.. +....+..+.+...++|.||+.+.|.+
T Consensus 6 ~~~~~Igvi~~~--~----~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 75 (288)
T 2qu7_A 6 GRSNIIAFIVPD--Q----NPFFTEVLTEISHECQKHHLHVAVASSEENEDKQQDLIETFVSQNVSAIILVPVKSK 75 (288)
T ss_dssp -CEEEEEEEESS--C----CHHHHHHHHHHHHHHGGGTCEEEEEECTTCHHHHHHHHHHHHHTTEEEEEECCSSSC
T ss_pred CCCCEEEEEECC--C----CchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCccEEEEecCCCC
Confidence 344567777743 1 2445555444433321 235554444432 233445667777788999999988764
No 192
>3gw6_A Endo-N-acetylneuraminidase; chaperone, glycosidase, hydrolase; HET: TAM; 2.60A {Enterobacteria phage K1F}
Probab=32.84 E-value=17 Score=30.96 Aligned_cols=14 Identities=36% Similarity=0.660 Sum_probs=12.1
Q ss_pred CEEEEEeCCchHHH
Q 025520 107 DAVIAVGGDGTLHE 120 (251)
Q Consensus 107 d~ivv~GGDGTl~~ 120 (251)
.+|+||||+||-+.
T Consensus 47 q~~i~~g~~~t~~~ 60 (275)
T 3gw6_A 47 QRIIFCGGEGTSST 60 (275)
T ss_dssp CEEEEESSSSSSTT
T ss_pred cEEEEecCCCCCCC
Confidence 58999999999764
No 193
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=32.73 E-value=1.8e+02 Score=24.61 Aligned_cols=76 Identities=11% Similarity=0.039 Sum_probs=44.8
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEE--EecC--CccHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICE--SLTS--GPSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~--~~t~--~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~v 121 (251)
.+++.+|.... ..+....+.+...+++. +.++.. .... ...+....++++...++|.|++.+-|.....+
T Consensus 140 ~~~ia~i~~~~---~~~~~~~~~~~~~l~~~---G~~v~~~~~~~~~~~~~d~~~~~~~l~~~~pdaI~~~~~~~~a~~~ 213 (385)
T 1pea_A 140 GERVVFIGSDY---IYPRESNHVMRHLYRQH---GGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAEL 213 (385)
T ss_dssp CSEEEEEEESS---HHHHHHHHHHHHHHHHT---TCEEEEEEEECSSCCHHHHHHHHHHHHHHTCSEEEEECCTHHHHHH
T ss_pred CcEEEEEeCCC---hHHHHHHHHHHHHHHHc---CCEEEEEEeecCCCCcchHHHHHHHHHHCCCCEEEEecccccHHHH
Confidence 58999887532 12234445555666654 233321 2222 33455667777766789988886655566777
Q ss_pred HHHHHh
Q 025520 122 VNGFFS 127 (251)
Q Consensus 122 ln~l~~ 127 (251)
+..+.+
T Consensus 214 ~~~~~~ 219 (385)
T 1pea_A 214 YRAIAR 219 (385)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777764
No 194
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=32.47 E-value=2.2e+02 Score=23.79 Aligned_cols=114 Identities=11% Similarity=0.032 Sum_probs=64.3
Q ss_pred CCCCCCCCeEEEEEcCCC--------CCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHc---CCCE
Q 025520 40 AASSSRRRDLVFVVNPRG--------ASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKE---GADA 108 (251)
Q Consensus 40 ~~~~~~~~~i~vivNP~s--------g~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~---~~d~ 108 (251)
+.-..+++.+.+|+|-.. ....+..-.+.+...|+.. ++++.++.--...+..+.++++... .+|.
T Consensus 14 Y~m~~~~rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~L---GF~V~~~~dlt~~em~~~l~~~~~~~h~~~d~ 90 (278)
T 3od5_A 14 YKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDL---GFEVKCFNDLKAEELLLKIHEVSTVSHADADC 90 (278)
T ss_dssp CCCCSSBCCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHT---TCEEEEEESCCHHHHHHHHHHHHHSCCTTBSC
T ss_pred cCCCCCCcCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHC---CCEEEEecCCCHHHHHHHHHHHHhhcccCCCE
Confidence 334556777777776542 1112233345566677664 4677666666677788888877653 3342
Q ss_pred E-E----------EEeCCch--HHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhhcCC
Q 025520 109 V-I----------AVGGDGT--LHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGW 162 (251)
Q Consensus 109 i-v----------v~GGDGT--l~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~ 162 (251)
+ + +.|=||. |.++++.+-... + .....+|-|-+|-+--||.+......
T Consensus 91 ~vv~ilSHG~~g~i~g~D~~v~l~~I~~~f~~~~----C--psL~gKPKlffiQACRG~~~~~g~~~ 151 (278)
T 3od5_A 91 FVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDK----C--HSLVGKPKIFIIQACRGNQHDVPVIP 151 (278)
T ss_dssp EEEEEESCEETTEEECSSSEEEHHHHHHTTSTTT----C--GGGTTSCEEEEEESCCSSBCBCEECC
T ss_pred EEEEEECCCCCCEEEEeCCeEEHHHHHHHhcccc----C--hhhcCCCcEEEEecCCCCcccCCeec
Confidence 2 2 2455665 333333331100 1 12345678999999999988766543
No 195
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=32.10 E-value=1.8e+02 Score=22.53 Aligned_cols=102 Identities=21% Similarity=0.169 Sum_probs=58.5
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHh-hcCCCccEEEEecCCccHHHHHHHHHHH-cCCCEEEEEe----CCch-
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRS-RLSVDCNICESLTSGPSHAIDITREAIK-EGADAVIAVG----GDGT- 117 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~-~~~~~~~~~~~~t~~~~~a~~~~~~~~~-~~~d~ivv~G----GDGT- 117 (251)
...++.|+.-.-- ..-.++.++..+..|+. +.-...++.++.....-|.--.++++.+ .++|.||++| |+-.
T Consensus 16 ~~~riaIV~arfn-~~I~~~Ll~ga~~~l~~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~H 94 (159)
T 1kz1_A 16 PELRILIVHARGN-LQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRASIARNTYDAVIGIGVLIKGSTMH 94 (159)
T ss_dssp TTCCEEEEECCTT-HHHHHHHHHHHHHHHHHHHCCCGGGEEEEECSSGGGHHHHHHHHHHHSCCSEEEEEEEEECCSSSH
T ss_pred CCCEEEEEEeeCc-HHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEecccccCCchH
Confidence 3456888774321 11112344445556666 4322235666666667777777777764 5799999988 5443
Q ss_pred ----HHHHHHHHHhCCcccccccccccCCceEEEecCCChh
Q 025520 118 ----LHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGS 154 (251)
Q Consensus 118 ----l~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN 154 (251)
-+++.++|.+-. -+....+..|+|...|--
T Consensus 95 fd~Va~~v~~Gl~~v~-------L~~~vPV~~GVLT~~~~e 128 (159)
T 1kz1_A 95 FEYISEAVVHGLMRVG-------LDSGVPVILGLLTVLNEE 128 (159)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHCCCEEEEEEEESSHH
T ss_pred HHHHHHHHHHHHHHHH-------hhcCCCEEEEEeCCCCHH
Confidence 345556665421 123445667888776543
No 196
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=31.75 E-value=1.8e+02 Score=23.19 Aligned_cols=72 Identities=13% Similarity=0.018 Sum_probs=35.4
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHH
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVN 123 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln 123 (251)
++.+.|.|++.-.. +.-....++.+...+++. ++++.+..+....+.. .++ ++|.||+.+.|-+ .+.+.
T Consensus 6 ~~~~~Igvi~~~~~-~~~~~~~~~gi~~~a~~~---g~~~~~~~~~~~~~~~---~~~---~vdgiI~~~~~~~-~~~~~ 74 (277)
T 3cs3_A 6 RQTNIIGVYLADYG-GSFYGELLEGIKKGLALF---DYEMIVCSGKKSHLFI---PEK---MVDGAIILDWTFP-TKEIE 74 (277)
T ss_dssp CCCCEEEEEECSSC-TTTHHHHHHHHHHHHHTT---TCEEEEEESTTTTTCC---CTT---TCSEEEEECTTSC-HHHHH
T ss_pred cCCcEEEEEecCCC-ChhHHHHHHHHHHHHHHC---CCeEEEEeCCCCHHHH---hhc---cccEEEEecCCCC-HHHHH
Confidence 45667888874322 222223333344444432 3555544443221110 011 7899999988755 35555
Q ss_pred HHH
Q 025520 124 GFF 126 (251)
Q Consensus 124 ~l~ 126 (251)
.+.
T Consensus 75 ~l~ 77 (277)
T 3cs3_A 75 KFA 77 (277)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 197
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=31.74 E-value=81 Score=25.18 Aligned_cols=83 Identities=11% Similarity=0.014 Sum_probs=0.0
Q ss_pred eEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecC-CccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHH
Q 025520 48 DLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTS-GPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFF 126 (251)
Q Consensus 48 ~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~ 126 (251)
.+.+++ |...+.-....++.++..+++. ++++.+..+. +.....+..+.+...+.|.||+.+.+.+ .+.+..+.
T Consensus 1 ~Igvi~-~~~~~~~~~~~~~gi~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~~~ 75 (276)
T 2h0a_A 1 TVSVLL-PFVATEFYRRLVEGIEGVLLEQ---RYDLALFPILSLARLKRYLENTTLAYLTDGLILASYDLT-ERFEEGRL 75 (276)
T ss_dssp CEEEEE-CCSCCHHHHHHHHHHHHHHGGG---TCEEEECCCCSCCCCC---------CCCSEEEEESCCCC-------CC
T ss_pred CEEEEE-CCCCCHHHHHHHHHHHHHHHHC---CCEEEEEeCCCchhhHHHHHHHHHhCCCCEEEEecCCCC-HHHHHHHh
Q ss_pred hCCcccccccccccCCceEEEe
Q 025520 127 SAGKLVTNHNRESAHSTALGLI 148 (251)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~lgil 148 (251)
...+|+-.+
T Consensus 76 -------------~~~iPvV~~ 84 (276)
T 2h0a_A 76 -------------PTERPVVLV 84 (276)
T ss_dssp -------------SCSSCEEEE
T ss_pred -------------hcCCCEEEE
No 198
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=31.65 E-value=1.5e+02 Score=24.53 Aligned_cols=113 Identities=12% Similarity=0.158 Sum_probs=58.5
Q ss_pred CCCCCCCCeEEEEEcCCCCC-------CChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHc---CCCEE
Q 025520 40 AASSSRRRDLVFVVNPRGAS-------GRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKE---GADAV 109 (251)
Q Consensus 40 ~~~~~~~~~i~vivNP~sg~-------g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~---~~d~i 109 (251)
++-..+++.+.+|+|-..=. ..+..-.+.+...|+.. ++++.++.--...+..+.++++... ..|.+
T Consensus 13 Y~m~~~~rg~aLIInn~~f~~~~l~~R~G~~~D~~~L~~~f~~L---GF~V~~~~dlt~~em~~~l~~~~~~~h~~~d~~ 89 (259)
T 3sir_A 13 YNMRHKNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQL---DFEVTVYKDCRYKDILRTIEYSASQNHSDSDCI 89 (259)
T ss_dssp CCCCSSEEEEEEEEEECCC-----------CCHHHHHHHHHHHT---TCEEEEEEECSHHHHHHHHHHHHTSCCTTEEEE
T ss_pred CCCCCCCccEEEEEeccccCCCCCCCCCCcHHHHHHHHHHHHHC---CCEEEEEeCCCHHHHHHHHHHHHHhhccCCCEE
Confidence 34455667788887654211 11122344566667664 4667666555667777878877643 23422
Q ss_pred E--E---------EeCCchHHHHHHHHHhCCccccccc-ccccCCceEEEecCCChhHHhhhc
Q 025520 110 I--A---------VGGDGTLHEVVNGFFSAGKLVTNHN-RESAHSTALGLIPLGTGSDFARTF 160 (251)
Q Consensus 110 v--v---------~GGDGTl~~vln~l~~~~~~~~~~~-~~~~~~~~lgilP~GTgN~fa~~l 160 (251)
| + .|=||.+. ++.|+.. .+... .....++-|-+|-+--||.+.+..
T Consensus 90 v~~~lsHG~~g~i~~~D~~v~--l~~i~~~---f~~~~cpsL~gKPKlf~iQACRG~~~~~g~ 147 (259)
T 3sir_A 90 LVAILSHGEMGYIYAKDTQYK--LDNIWSF---FTANHCPSLAGKPKLFFIQACQGDRLDGGV 147 (259)
T ss_dssp EEEEEECTTCCCCCCTTHHHH--HHHTTGG---GSTTTCGGGSSSCEEEEEEEETTSCEEC--
T ss_pred EEEEecCCCCCeEEeCCCcEE--HHHHHHH---hhhccCccccCCCCEEEEecCCCCcccCCc
Confidence 2 1 23455432 2333221 01001 112346779999999888876544
No 199
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=31.44 E-value=2.3e+02 Score=23.66 Aligned_cols=67 Identities=4% Similarity=-0.026 Sum_probs=33.0
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCc--cHHHHHHHHHHHcCCCEEEEEeC
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGP--SHAIDITREAIKEGADAVIAVGG 114 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~--~~a~~~~~~~~~~~~d~ivv~GG 114 (251)
.+.+.+.|++.... +.-....++.++..++.. ++++.+..+... ....+..+.+...+.|.||+.+.
T Consensus 59 ~~~~~Igvi~~~~~-~~~~~~~~~gi~~~a~~~---g~~~~~~~~~~~~~~~~~~~l~~l~~~~vdGiIi~~~ 127 (349)
T 1jye_A 59 KQSLLIGVATSSLA-LHAPSQIVAAILSRADQL---GASVVVSMVERSGVEACKTAVHNLLAQRVSGLIINYP 127 (349)
T ss_dssp ---CEEEEEESCTT-SHHHHHHHHHHHHHHHHT---TCEEEEEECCSSSHHHHHHHHHHHHTTTCSCEEEESC
T ss_pred CCCCEEEEEeCCCC-cccHHHHHHHHHHHHHHc---CCEEEEEeCCCCcHHHHHHHHHHHHHCCCCEEEEecC
Confidence 45567777774321 111112233333444432 455554444332 23345566777778999998864
No 200
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=31.28 E-value=47 Score=26.38 Aligned_cols=35 Identities=26% Similarity=0.327 Sum_probs=24.7
Q ss_pred EEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecC
Q 025520 108 AVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPL 150 (251)
Q Consensus 108 ~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~ 150 (251)
.|++-||=||+.|+...+.-.. -.....|+.++..
T Consensus 101 ~IvlPGG~GTl~El~e~lt~~q--------~g~~~kPvvll~~ 135 (191)
T 1t35_A 101 FISMPGGFGTYEELFEVLCWAQ--------IGIHQKPIGLYNV 135 (191)
T ss_dssp EEECSCCHHHHHHHHHHHHTTS--------CSSCCCCEEEECG
T ss_pred EEEeCCCccHHHHHHHHHHHHH--------hCCCCCCEEEecC
Confidence 5666789999999999985321 1234578888843
No 201
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=31.20 E-value=1.7e+02 Score=22.50 Aligned_cols=99 Identities=8% Similarity=-0.018 Sum_probs=55.4
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHH-HcCCCEEEEEe----CCc----
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAI-KEGADAVIAVG----GDG---- 116 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~-~~~~d~ivv~G----GDG---- 116 (251)
..++.|+.-.-. ..-.++.++..+..|+.+....-++.++.....-|.--.++++. ..++|.||++| |+-
T Consensus 11 ~~ri~IV~arfn-~~I~~~Ll~gA~~~l~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd 89 (157)
T 2obx_A 11 TVRIAVVRARWH-ADIVDQCVSAFEAEMADIGGDRFAVDVFDVPGAYEIPLHARTLAETGRYGAVLGTAFVVNGGIYRHE 89 (157)
T ss_dssp CEEEEEEEECTT-HHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHHTCCSEEEEEEECCCCSSBCCH
T ss_pred CCEEEEEEeeCc-HHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeccccCCCcHHH
Confidence 356777775321 11112334444556665532222455666666667777777766 45799999998 433
Q ss_pred -hHHHHHHHHHhCCcccccccccccCCceEEEecCCC
Q 025520 117 -TLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGT 152 (251)
Q Consensus 117 -Tl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GT 152 (251)
--+++..+|.+-. -+....+..|+|...+
T Consensus 90 ~Va~~vs~Gl~~v~-------L~~~vPV~~GVLT~~~ 119 (157)
T 2obx_A 90 FVASAVIDGMMNVQ-------LSTGVPVLSAVLTPHN 119 (157)
T ss_dssp HHHHHHHHHHHHHH-------HHHCCCEEEEEECBSC
T ss_pred HHHHHHHHHHHHHH-------hhcCCCEEEEecCCCC
Confidence 2466777776422 1223345566666655
No 202
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=31.14 E-value=1e+02 Score=23.55 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=25.6
Q ss_pred EecCCccHHHHHHHHHHH-cCCCEEEEEeCCc-----hHHHHHHHHH
Q 025520 86 SLTSGPSHAIDITREAIK-EGADAVIAVGGDG-----TLHEVVNGFF 126 (251)
Q Consensus 86 ~~t~~~~~a~~~~~~~~~-~~~d~ivv~GGDG-----Tl~~vln~l~ 126 (251)
+..++.+...+..+++.+ +++|+||+.||=| -..+++..+.
T Consensus 51 iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g~~D~t~~a~~~~~ 97 (167)
T 1uuy_A 51 VVPDEVERIKDILQKWSDVDEMDLILTLGGTGFTPRDVTPEATKKVI 97 (167)
T ss_dssp EECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTCCHHHHHHHHC
T ss_pred EcCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCCchHHHHHHHh
Confidence 444555555566666554 4799999999854 2345555553
No 203
>2x9a_A Attachment protein G3P; transmembrane, phage infection, phage recognition, HOST-VIRU interaction, virion; 2.47A {Enterobacteria phage IF1} PDB: 2x9b_A
Probab=31.03 E-value=14 Score=24.17 Aligned_cols=11 Identities=9% Similarity=-0.185 Sum_probs=9.9
Q ss_pred EEEEEeCCchH
Q 025520 108 AVIAVGGDGTL 118 (251)
Q Consensus 108 ~ivv~GGDGTl 118 (251)
-|+|++||||+
T Consensus 40 GViVg~~dgtv 50 (65)
T 2x9a_A 40 GIGIGYDNDTS 50 (65)
T ss_dssp EEEEEETTTTE
T ss_pred eEEEECCCCCE
Confidence 68999999996
No 204
>3c5y_A Ribose/galactose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.81A {Novosphingobium aromaticivorans}
Probab=30.91 E-value=71 Score=26.41 Aligned_cols=76 Identities=9% Similarity=-0.004 Sum_probs=38.8
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecC---------CccHHHHHHHHHHHcCCCEEEEEeCCc
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTS---------GPSHAIDITREAIKEGADAVIAVGGDG 116 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~---------~~~~a~~~~~~~~~~~~d~ivv~GGDG 116 (251)
.+++.+| |..|..++.....+.+...|+.. ++++..+-|. +|+-+...++.......|.-|++.|-|
T Consensus 19 ~mkiali-~~~sqa~kN~~lKe~i~~~L~~~---G~eV~D~G~~s~~d~~svDYPd~a~~vA~~V~~g~~d~GIliCGTG 94 (231)
T 3c5y_A 19 GMKIALI-IENSQAAKNAVVHEALTTVAEPL---GHKVFNYGMYTAEDKASLTYVMNGLLAGILLNSGAADFVVTGCGTG 94 (231)
T ss_dssp CCEEEEC-CCGGGGGGHHHHHHHHHHHHGGG---TCEEEECCCCSTTCSSCCCHHHHHHHHHHHHHHTSCSEEEEEESSS
T ss_pred cceEEEE-ecCCHhhhHHHHHHHHHHHHHHC---CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHcCCCCeEEEEcCCc
Confidence 3455544 44333333333444566667653 3555554222 334455555555555667666666666
Q ss_pred -hHHHHHHHH
Q 025520 117 -TLHEVVNGF 125 (251)
Q Consensus 117 -Tl~~vln~l 125 (251)
=++-++|.+
T Consensus 95 iG~sIAANKv 104 (231)
T 3c5y_A 95 MGSMLAANAM 104 (231)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHhcC
Confidence 344455544
No 205
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=30.91 E-value=98 Score=26.59 Aligned_cols=66 Identities=12% Similarity=-0.013 Sum_probs=34.7
Q ss_pred EEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecC------CccHHHHHHH----HHHHcCCC-EEEEEeCCch
Q 025520 49 LVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTS------GPSHAIDITR----EAIKEGAD-AVIAVGGDGT 117 (251)
Q Consensus 49 i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~------~~~~a~~~~~----~~~~~~~d-~ivv~GGDGT 117 (251)
-.-|+.|.++-. ...+++.++.|++. ++++.+-.+. ..++.++-++ .+...+.| ++-+.||+|+
T Consensus 19 ~I~ivaPSs~~~--~~~~~~~~~~L~~~---G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGGyga 93 (311)
T 1zl0_A 19 RVALIAPASAIA--TDVLEATLRQLEVH---GVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPDITAVWCLRGGYGC 93 (311)
T ss_dssp EEEEECCSBCCC--HHHHHHHHHHHHHT---TCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHSTTEEEEEESCCSSCG
T ss_pred EEEEEeCCCCCC--HHHHHHHHHHHHhC---CCEEEECccccccccccCCCHHHHHHHHHHHHhCCCCCEEEEccCCcCH
Confidence 355678887643 45556667778774 3444431111 1222333333 33334555 4555799998
Q ss_pred HH
Q 025520 118 LH 119 (251)
Q Consensus 118 l~ 119 (251)
..
T Consensus 94 ~r 95 (311)
T 1zl0_A 94 GQ 95 (311)
T ss_dssp GG
T ss_pred HH
Confidence 64
No 206
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=30.78 E-value=1.8e+02 Score=22.46 Aligned_cols=101 Identities=10% Similarity=0.080 Sum_probs=56.6
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHH-cCCCEEEEEe----CCc--
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIK-EGADAVIAVG----GDG-- 116 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~-~~~d~ivv~G----GDG-- 116 (251)
....++.|+.-.-. ..-.++.++..+..|+.+....-++.++.....-|.--.++++.+ .+||.||++| |+-
T Consensus 8 ~~~~ri~IV~arfn-~~I~~~Ll~gA~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~H 86 (158)
T 1di0_A 8 KTSFKIAFIQARWH-ADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIVGAAFVIDGGIYD 86 (158)
T ss_dssp -CCEEEEEEEECTT-HHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHTSCCSEEEEEEECCCCSSBC
T ss_pred CCCCEEEEEEEeCc-HHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeccccCCCcH
Confidence 34567888775321 111123344445566665322224566666666677777777764 5799999998 443
Q ss_pred ---hHHHHHHHHHhCCcccccccccccCCceEEEecCCC
Q 025520 117 ---TLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGT 152 (251)
Q Consensus 117 ---Tl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GT 152 (251)
--+++..+|.+-. -+....+..|+|...+
T Consensus 87 fd~Va~~vs~Gl~~v~-------L~~~vPV~~GVLT~~~ 118 (158)
T 1di0_A 87 HDFVATAVINGMMQVQ-------LETEVPVLSVVLTPHH 118 (158)
T ss_dssp CHHHHHHHHHHHHHHH-------HHHCCCEEEEEECBSS
T ss_pred HHHHHHHHHHHHHHHH-------hhcCCCEEEEecCCCC
Confidence 2466677776422 1223345566666665
No 207
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=30.72 E-value=2.2e+02 Score=24.22 Aligned_cols=104 Identities=10% Similarity=0.074 Sum_probs=59.6
Q ss_pred CCeEEEEEcCCC-----CCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHH----cCCCEEE------
Q 025520 46 RRDLVFVVNPRG-----ASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIK----EGADAVI------ 110 (251)
Q Consensus 46 ~~~i~vivNP~s-----g~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~----~~~d~iv------ 110 (251)
.+++.+|+|-.. ....+..-.+.+...|+.. ++++.++.--...+..+.++++.. .+.|.+|
T Consensus 59 ~~r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~L---GF~V~~~~dlt~~em~~~l~~f~~~~dh~~~d~~vv~~lsH 135 (302)
T 3e4c_A 59 RTRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNL---GYSVDVKKNLTASDMTTELEAFAHRPEHKTSDSTFLVFMSH 135 (302)
T ss_dssp CCCEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHT---TCEEEEEESCCHHHHHHHHHHHHTCGGGGGCSCEEEEEEEE
T ss_pred CccEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHC---CCEEEEeeCCCHHHHHHHHHHHHhhhccCCCCEEEEEEecc
Confidence 356766666542 1122233345566677664 467766665667778888887753 2355333
Q ss_pred -----EEeCCc--------hHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhh
Q 025520 111 -----AVGGDG--------TLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFAR 158 (251)
Q Consensus 111 -----v~GGDG--------Tl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~ 158 (251)
+.|=|+ .+.++++.+-... + .....++-|-+|-+--||.+..
T Consensus 136 G~~~~i~g~D~~~~~~~~v~l~~I~~~F~~~~----C--psL~gKPKlffIQACRG~~~~~ 190 (302)
T 3e4c_A 136 GIREGICGKKHSEQVPDILQLNAIFNMLNTKN----C--PSLKDKPKVIIIQAARGDSPGV 190 (302)
T ss_dssp EETTEEECTTCCSSSCCEECHHHHHHHTSTTT----C--GGGTTSCEEEEEEEECSSSCCC
T ss_pred CcCCeEEeecccccCCcEEEHHHHHHHHhhhc----c--hhhcCCccEEEEECCCCCCCCc
Confidence 235455 2666666553211 0 1124567799999988888753
No 208
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=30.10 E-value=1.4e+02 Score=24.30 Aligned_cols=83 Identities=5% Similarity=-0.004 Sum_probs=40.3
Q ss_pred CCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecCCcc-HHHHHHHHHHHcCCCEEEEEeCCchHHH
Q 025520 43 SSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSGPS-HAIDITREAIKEGADAVIAVGGDGTLHE 120 (251)
Q Consensus 43 ~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~~~~-~a~~~~~~~~~~~~d~ivv~GGDGTl~~ 120 (251)
+.+.+.|.|++............|..+..-++..+. .++++.+..+.... ...++.+.+...+.|.||+.+.+.+ .+
T Consensus 19 ~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~ 97 (305)
T 3huu_A 19 TNKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKD-DP 97 (305)
T ss_dssp --CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBTT-CH
T ss_pred hCCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcCC-cH
Confidence 345567777765410000112344444433332221 13555444333222 2234556666778999999987755 35
Q ss_pred HHHHHH
Q 025520 121 VVNGFF 126 (251)
Q Consensus 121 vln~l~ 126 (251)
.+..+.
T Consensus 98 ~~~~l~ 103 (305)
T 3huu_A 98 IEHLLN 103 (305)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 566554
No 209
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=29.74 E-value=1.8e+02 Score=23.15 Aligned_cols=75 Identities=11% Similarity=0.100 Sum_probs=36.8
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCch-HHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGT-LHEVVN 123 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGT-l~~vln 123 (251)
+.+.+++ |... ...|..+...++..+. .++++.+..+.. .....+..+.+...+.|.|++.+.|.. +.+.+.
T Consensus 2 ~~Igvi~-~~~~----~~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 76 (271)
T 2dri_A 2 DTIALVV-STLN----NPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVK 76 (271)
T ss_dssp CEEEEEE-SCSS----SHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHH
T ss_pred cEEEEEe-cCCC----CHHHHHHHHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHH
Confidence 4566665 3321 2344444433332221 135554443332 222334455666678899998887654 234555
Q ss_pred HHH
Q 025520 124 GFF 126 (251)
Q Consensus 124 ~l~ 126 (251)
.+.
T Consensus 77 ~~~ 79 (271)
T 2dri_A 77 MAN 79 (271)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 210
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=29.56 E-value=1.4e+02 Score=23.47 Aligned_cols=62 Identities=13% Similarity=-0.073 Sum_probs=31.8
Q ss_pred CCeEEEEEcCCCCC---CChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEE
Q 025520 46 RRDLVFVVNPRGAS---GRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAV 112 (251)
Q Consensus 46 ~~~i~vivNP~sg~---g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~ 112 (251)
.|-+.|.-+|+-.. +.+....+.+...++.. ..++.++......+..++.+++.. .|.||++
T Consensus 13 ~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~---g~~v~~~dL~~~~d~~~~~~~l~~--AD~iV~~ 77 (204)
T 2amj_A 13 SNILIINGAKKFAHSNGQLNDTLTEVADGTLRDL---GHDVRIVRADSDYDVKAEVQNFLW--ADVVIWQ 77 (204)
T ss_dssp CEEEEEECCC------CHHHHHHHHHHHHHHHHT---TCEEEEEESSSCCCHHHHHHHHHH--CSEEEEE
T ss_pred cCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHc---CCEEEEEeCCccccHHHHHHHHHh--CCEEEEE
Confidence 33444445888321 33344555555566553 245555555445566666666553 6777765
No 211
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=28.93 E-value=1.6e+02 Score=21.20 Aligned_cols=106 Identities=17% Similarity=0.171 Sum_probs=54.4
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHc-CCCEEEEEe---CC--chHH
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKE-GADAVIAVG---GD--GTLH 119 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~-~~d~ivv~G---GD--GTl~ 119 (251)
|++++|++-.. .|.+.+..+.+...|... ++++.++...... ..+ + . ++|.|+++. |+ |.+.
T Consensus 1 M~ki~I~y~S~--tGnT~~~A~~ia~~l~~~---g~~v~~~~~~~~~-~~~----l--~~~~d~ii~g~pty~~~~G~~p 68 (148)
T 3f6r_A 1 MSKVLIVFGSS--TGNTESIAQKLEELIAAG---GHEVTLLNAADAS-AEN----L--ADGYDAVLFGCSAWGMEDLEMQ 68 (148)
T ss_dssp -CEEEEEEECS--SSHHHHHHHHHHHHHHTT---TCEEEEEETTTBC-CTT----T--TTTCSEEEEEECEECSSSCEEC
T ss_pred CCeEEEEEECC--CchHHHHHHHHHHHHHhC---CCeEEEEehhhCC-HhH----h--cccCCEEEEEecccCCCCCCCc
Confidence 46788888654 456777777777777653 3444444433211 011 1 2 578777665 45 7776
Q ss_pred HHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhhcCCCCCHHHHHHHHH
Q 025520 120 EVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIA 174 (251)
Q Consensus 120 ~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~~~~~~al~~i~ 174 (251)
..+..+++.- ........+++++- +||. .+++.......++.++
T Consensus 69 ~~~~~fl~~l------~~~~l~~k~~~vfg--~G~~---~y~~~~~a~~~l~~~l 112 (148)
T 3f6r_A 69 DDFLSLFEEF------DRIGLAGRKVAAFA--SGDQ---EYEHFCGAVPAIEERA 112 (148)
T ss_dssp HHHHHHHTTG------GGTCCTTCEEEEEE--EECT---TSSSTTTHHHHHHHHH
T ss_pred HHHHHHHHHh------hccCCCCCEEEEEE--eCCC---CHHHHHHHHHHHHHHH
Confidence 6666565421 00113456777774 4443 1233334444454443
No 212
>1xxa_A ARGR, arginine repressor; complex (DNA binding protein/peptide); HET: ARG; 2.20A {Escherichia coli K12} SCOP: d.74.2.1 PDB: 1xxb_A* 1xxc_A
Probab=28.73 E-value=39 Score=22.85 Aligned_cols=31 Identities=26% Similarity=0.276 Sum_probs=23.7
Q ss_pred cCCccHHHHHHHHHHHc-CCC-EEEEEeCCchH
Q 025520 88 TSGPSHAIDITREAIKE-GAD-AVIAVGGDGTL 118 (251)
Q Consensus 88 t~~~~~a~~~~~~~~~~-~~d-~ivv~GGDGTl 118 (251)
.+.|+.|..++..+... ..+ ++-.+.||-|+
T Consensus 21 kT~PG~A~~va~~iD~~~~~~~I~GTIAGDDTI 53 (78)
T 1xxa_A 21 HTSPGAAQLIARLLDSLGKAEGILGTIAGDDTI 53 (78)
T ss_dssp EESTTTHHHHHHHHTTTTTTTTEEEEEECSSEE
T ss_pred EeCCCcHHHHHHHHHhcCCCCCeEEEEecCCEE
Confidence 34688898888887744 444 88899999886
No 213
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=28.60 E-value=1.9e+02 Score=24.61 Aligned_cols=112 Identities=15% Similarity=0.212 Sum_probs=63.1
Q ss_pred CCCCCCCCeEEEEEcCCCCC--------CChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHc---CCCE
Q 025520 40 AASSSRRRDLVFVVNPRGAS--------GRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKE---GADA 108 (251)
Q Consensus 40 ~~~~~~~~~i~vivNP~sg~--------g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~---~~d~ 108 (251)
++-..+.+.+.+|+|-..=. ..+..-.+.+...|+.. ++++.++.--...+..+.++++.+. +.|.
T Consensus 62 Y~m~~~~rg~aLIInN~~f~~~~~L~~R~G~~~Da~~L~~~f~~L---GF~V~~~~dlt~~em~~~l~~~~~~~h~~~d~ 138 (305)
T 1f1j_A 62 YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSL---GFDVIVYNDCSCAKMQDLLKKASEEDHTNAAC 138 (305)
T ss_dssp CCCCSSEEEEEEEEECCCCCTTTTCCCCTTHHHHHHHHHHHHHHH---TEEEEEEESCCHHHHHHHHHHHHHSCGGGEEE
T ss_pred cccCCCCCCEEEEEechhcCCCccCccCCCcHHHHHHHHHHHHHC---CCEEEEecCcCHHHHHHHHHHHHHhhcCCCCE
Confidence 44455667888888754211 11233345566677764 4677666555667777777777653 3343
Q ss_pred -EEE----------EeCCc--hHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhhc
Q 025520 109 -VIA----------VGGDG--TLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTF 160 (251)
Q Consensus 109 -ivv----------~GGDG--Tl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~l 160 (251)
|++ .|=|| .+.++.+.+-.. ++ .....++-|-+|-+--||.+.+..
T Consensus 139 ~vv~ilsHG~~~~i~g~D~~v~l~~I~~~f~~~----~C--psL~gKPKlffiQACRG~~~~~g~ 197 (305)
T 1f1j_A 139 FACILLSHGEENVIYGKDGVTPIKDLTAHFRGD----RS--KTLLEKPKLFFIQACRGTELDDGI 197 (305)
T ss_dssp EEEEEESCEETTEEECSSSEEEHHHHHHTTSTT----TC--GGGTTSCEEEEEESCCSSBCBCCB
T ss_pred EEEEEecCCCCCeEEecCCeEEHHHHHHHhhhc----cC--hhhcCCceEEEeccccCCcccCCc
Confidence 222 33355 344444433110 01 112346779999999999886544
No 214
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=28.42 E-value=1.9e+02 Score=21.66 Aligned_cols=72 Identities=1% Similarity=-0.045 Sum_probs=40.1
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeC--CchHH--HHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGG--DGTLH--EVV 122 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GG--DGTl~--~vl 122 (251)
+++.|++-.. .|.+.+..+.+...|... +.++.++......+..++..++. ++|.||+..- .|.+. ..+
T Consensus 5 ~kv~IvY~S~--~GnT~~iA~~ia~~l~~~---g~~v~~~~~~~~~~~~~~~~~~~--~~d~ii~Gspty~g~~p~~~~l 77 (159)
T 3fni_A 5 TSIGVFYVSE--YGYSDRLAQAIINGITKT---GVGVDVVDLGAAVDLQELRELVG--RCTGLVIGMSPAASAASIQGAL 77 (159)
T ss_dssp CEEEEEECTT--STTHHHHHHHHHHHHHHT---TCEEEEEESSSCCCHHHHHHHHH--TEEEEEEECCBTTSHHHHHHHH
T ss_pred CEEEEEEECC--ChHHHHHHHHHHHHHHHC---CCeEEEEECcCcCCHHHHHHHHH--hCCEEEEEcCcCCCCccHHHHH
Confidence 5788888554 467778877777777663 34555454433214445544443 4676666531 14455 444
Q ss_pred HHH
Q 025520 123 NGF 125 (251)
Q Consensus 123 n~l 125 (251)
..|
T Consensus 78 ~~l 80 (159)
T 3fni_A 78 STI 80 (159)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 215
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1
Probab=28.34 E-value=2.3e+02 Score=22.78 Aligned_cols=54 Identities=22% Similarity=0.345 Sum_probs=35.0
Q ss_pred cEEEEecCCcc-------HHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEe
Q 025520 82 NICESLTSGPS-------HAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLI 148 (251)
Q Consensus 82 ~~~~~~t~~~~-------~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgil 148 (251)
.+.++-+.+.. .+.++.+.+.+.++ .||..||-|--..+..+.+..+ ...+|++
T Consensus 39 ~VaV~Gss~~~~~~~~~~~A~~lg~~La~~g~-~lVsGGg~GiM~aa~~gAl~~g------------G~~iGV~ 99 (217)
T 1wek_A 39 LVSVFGSARFGEGHPAYEAGYRLGRALAEAGF-GVVTGGGPGVMEAVNRGAYEAG------------GVSVGLN 99 (217)
T ss_dssp EEEEECCSSCCTTSHHHHHHHHHHHHHHHHTC-EEEECSCSHHHHHHHHHHHHTT------------CCEEEEE
T ss_pred EEEEEeCCCCCCCcHHHHHHHHHHHHHHHCCC-EEEeCChhhHHHHHHHHHHHcC------------CCEEEEe
Confidence 46666655543 25566666666665 6666777888888888877543 4678883
No 216
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=28.21 E-value=1.7e+02 Score=25.06 Aligned_cols=77 Identities=5% Similarity=-0.048 Sum_probs=45.9
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEE--EecCCccHHHHHHHHHHHcCCCEEEEEeCCc-hHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICE--SLTSGPSHAIDITREAIKEGADAVIAVGGDG-TLHEV 121 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~--~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDG-Tl~~v 121 (251)
..+++.+|.... ..+....+.+...+++. +.++.. .......+...++.++...+.|+|++++-.+ ....+
T Consensus 163 ~~~~vail~~~~---~~g~~~~~~~~~~~~~~---g~~vv~~~~~~~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~ 236 (419)
T 3h5l_A 163 PNNKIAIITGPG---IYSVNIANAIRDGAGEY---GYDVSLFETVAIPVSDWGPTLAKLRADPPAVIVVTHFYPQDQALF 236 (419)
T ss_dssp SSSEEEEEECSS---HHHHHHHHHHHHHGGGG---TCEEEEEEECCSSCSCCHHHHHHHHHSCCSEEEECCCCHHHHHHH
T ss_pred CCCEEEEEEcCc---chhHHHHHHHHHHHHHc---CCeEEEEecCCCCCccHHHHHHHHHhcCCCEEEEccccCchHHHH
Confidence 568899888532 22233444455555543 233332 2222345667778888888999988876554 46677
Q ss_pred HHHHHh
Q 025520 122 VNGFFS 127 (251)
Q Consensus 122 ln~l~~ 127 (251)
+..+..
T Consensus 237 ~~~~~~ 242 (419)
T 3h5l_A 237 MNQFMT 242 (419)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 777754
No 217
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=27.70 E-value=2.2e+02 Score=23.40 Aligned_cols=68 Identities=4% Similarity=0.023 Sum_probs=36.0
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEeCCch
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGT 117 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGT 117 (251)
.+.+.+.+++.-. . ...|..+..-++..+. .++++.+..+.. +....+..+.+...++|.|| .+.|.+
T Consensus 58 ~~~~~Igvi~~~~-~----~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI-~~~~~~ 127 (330)
T 3ctp_A 58 KNSKTIGLMVPNI-S----NPFFNQMASVIEEYAKNKGYTLFLCNTDDDKEKEKTYLEVLQSHRVAGII-ASRSQC 127 (330)
T ss_dssp --CCEEEEEESCT-T----SHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEE-EETCCC
T ss_pred CCCCEEEEEeCCC-C----CcHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEE-ECCCCC
Confidence 4556788887432 1 2344444333332211 235555444432 23344566777778899999 887755
No 218
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=27.55 E-value=2.2e+02 Score=22.88 Aligned_cols=67 Identities=18% Similarity=0.201 Sum_probs=32.5
Q ss_pred CCeEEEEEcCCCC-CCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHH
Q 025520 46 RRDLVFVVNPRGA-SGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNG 124 (251)
Q Consensus 46 ~~~i~vivNP~sg-~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~ 124 (251)
.+++.|| |.+. ....+.....+.+.|+.. ++++. .+....+.. +++. +.|.|++.||+ -...+..
T Consensus 31 ~~~i~iI--~~a~~~~~~~~~~~~~~~al~~l---G~~~~--~v~~~~d~~---~~l~--~ad~I~lpGG~--~~~~~~~ 96 (229)
T 1fy2_A 31 RRSAVFI--PFAGVTQTWDEYTDKTAEVLAPL---GVNVT--GIHRVADPL---AAIE--KAEIIIVGGGN--TFQLLKE 96 (229)
T ss_dssp CCEEEEE--CTTCCSSCHHHHHHHHHHHHGGG---TCEEE--ETTSSSCHH---HHHH--HCSEEEECCSC--HHHHHHH
T ss_pred CCeEEEE--ECCCCCCCHHHHHHHHHHHHHHC---CCEEE--EEeccccHH---HHHh--cCCEEEECCCc--HHHHHHH
Confidence 4566666 4442 233344455666677654 23433 232222221 2222 37888877755 4444454
Q ss_pred HH
Q 025520 125 FF 126 (251)
Q Consensus 125 l~ 126 (251)
|.
T Consensus 97 l~ 98 (229)
T 1fy2_A 97 SR 98 (229)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 219
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=27.32 E-value=1.9e+02 Score=24.44 Aligned_cols=78 Identities=6% Similarity=0.092 Sum_probs=35.6
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecC------CccHHHHHHHHHHHcCCCEEEEEeCCch
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTS------GPSHAIDITREAIKEGADAVIAVGGDGT 117 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~------~~~~a~~~~~~~~~~~~d~ivv~GGDGT 117 (251)
-..+++.+|+|-. -+ ....+.+...+++. +.++...... ...+...++.++...+.|+|++.+-...
T Consensus 119 ~gw~~vaii~d~~--~g--~~~~~~~~~~~~~~---g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~ 191 (376)
T 3hsy_A 119 YQWDKFAYLYDSD--RG--LSTLQAVLDSAAEK---KWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDK 191 (376)
T ss_dssp TTCCEEEEEECST--TC--SHHHHHHHHHHHHH---TCEEEEEECTTCC--------------------CEEEEESCHHH
T ss_pred cCCCEEEEEEeCc--hh--HHHHHHHHHHhhhc---CCeEEEEEeccccccccchhHHHHHHHHhhCCCeEEEEECCHHH
Confidence 3678999999532 22 23445555666654 2333322211 1245556667776677888888776666
Q ss_pred HHHHHHHHHhC
Q 025520 118 LHEVVNGFFSA 128 (251)
Q Consensus 118 l~~vln~l~~~ 128 (251)
...++..+.+.
T Consensus 192 ~~~~~~qa~~~ 202 (376)
T 3hsy_A 192 VNDIVDQVITI 202 (376)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 66777776543
No 220
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=27.23 E-value=1.5e+02 Score=25.19 Aligned_cols=78 Identities=10% Similarity=0.069 Sum_probs=47.1
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEE-ecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICES-LTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVN 123 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~-~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln 123 (251)
..+++.||.|-. .+....+.+...+++. +.++... ......+...+++++...+.|+|++.+-......++.
T Consensus 137 g~~~v~ii~d~~----~g~~~~~~~~~~~~~~---g~~v~~~~~~~~~~d~~~~l~~i~~~~~~vi~~~~~~~~~~~~~~ 209 (395)
T 3h6g_A 137 KWKTVTVVYDDS----TGLIRLQELIKAPSRY---NLRLKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILK 209 (395)
T ss_dssp TCSEEEEEESST----HHHHHTHHHHTGGGTS---SCEEEEEECCSSGGGGHHHHHHHHHTTCCEEEEESCHHHHHHHHH
T ss_pred CCeEEEEEEECh----hHHHHHHHHHHhhhcC---CceEEEEEeCCCchhHHHHHHHHhhcCCeEEEEECCHHHHHHHHH
Confidence 578899887532 2223333333333332 2333221 2223456777888888888999999887777777888
Q ss_pred HHHhCC
Q 025520 124 GFFSAG 129 (251)
Q Consensus 124 ~l~~~~ 129 (251)
.+.+.+
T Consensus 210 qa~~~g 215 (395)
T 3h6g_A 210 QALAMG 215 (395)
T ss_dssp HHHHTT
T ss_pred HHHHcc
Confidence 776543
No 221
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=26.97 E-value=1.7e+02 Score=20.71 Aligned_cols=38 Identities=16% Similarity=0.241 Sum_probs=24.4
Q ss_pred HHHHcCCCEEEEE-eCCc----hHHHHHHHHHhCCcccccccccccCCceEEEecC
Q 025520 100 EAIKEGADAVIAV-GGDG----TLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPL 150 (251)
Q Consensus 100 ~~~~~~~d~ivv~-GGDG----Tl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~ 150 (251)
+..+++-+++++. +||= |..+.+..+.+ ..+++-++|+
T Consensus 74 ~~~~~G~~V~~l~d~GdP~i~~~~~~l~~~~~~-------------~gi~v~viPG 116 (117)
T 3hh1_A 74 ELLEEGSDVALVTDAGTPAISDPGYTMASAAHA-------------AGLPVVPVPG 116 (117)
T ss_dssp HHHHTTCCEEEEEETTSCGGGSTTHHHHHHHHH-------------TTCCEEEEC-
T ss_pred HHHHCCCeEEEEecCCcCeEeccHHHHHHHHHH-------------CCCcEEEeCC
Confidence 3345678899999 8994 45555555532 3577788874
No 222
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=26.59 E-value=2.1e+02 Score=21.65 Aligned_cols=31 Identities=6% Similarity=0.117 Sum_probs=18.6
Q ss_pred CCeEEEEE-cCCCCCCChhhHHHHHHHHHHhh
Q 025520 46 RRDLVFVV-NPRGASGRTGKEWKKLLPYLRSR 76 (251)
Q Consensus 46 ~~~i~viv-NP~sg~g~~~~~~~~i~~~L~~~ 76 (251)
|+++++|+ .|+..++.+.+..+.+...++..
T Consensus 1 Mmkilii~~S~~~~~s~t~~la~~~~~~l~~~ 32 (201)
T 1t5b_A 1 MSKVLVLKSSILAGYSQSGQLTDYFIEQWREK 32 (201)
T ss_dssp CCEEEEEECCSSGGGCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHHHh
Confidence 34665555 55532356677777777777764
No 223
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=25.86 E-value=1e+02 Score=25.41 Aligned_cols=52 Identities=15% Similarity=0.018 Sum_probs=33.1
Q ss_pred HHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhh
Q 025520 97 ITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFAR 158 (251)
Q Consensus 97 ~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~ 158 (251)
.++++...+.|.|.+.|-||+-.+-+..+++.- ....+|+.+.|..- +.|..
T Consensus 28 ~l~~~~~~GtDaI~vGgs~gvt~~~~~~~v~~i---------k~~~~Piil~p~~~-~~~~~ 79 (235)
T 3w01_A 28 DLDAICMSQTDAIMIGGTDDVTEDNVIHLMSKI---------RRYPLPLVLEISNI-ESVMP 79 (235)
T ss_dssp HHHHHHTSSCSEEEECCSSCCCHHHHHHHHHHH---------TTSCSCEEEECCCS-TTCCT
T ss_pred HHHHHHHcCCCEEEECCcCCcCHHHHHHHHHHh---------cCcCCCEEEecCCH-HHhhc
Confidence 445567789999999998987333333333211 12578999999964 44544
No 224
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=25.74 E-value=2.6e+02 Score=23.81 Aligned_cols=19 Identities=37% Similarity=0.342 Sum_probs=15.2
Q ss_pred CCCEEEEEeCCchHHHHHH
Q 025520 105 GADAVIAVGGDGTLHEVVN 123 (251)
Q Consensus 105 ~~d~ivv~GGDGTl~~vln 123 (251)
..|.+|.-+|=+|+.|++.
T Consensus 252 ~aDlvI~raG~~Tv~E~~a 270 (365)
T 3s2u_A 252 WADLVICRAGALTVSELTA 270 (365)
T ss_dssp HCSEEEECCCHHHHHHHHH
T ss_pred cceEEEecCCcchHHHHHH
Confidence 4678888789899988776
No 225
>3ky8_A Putative riboflavin biosynthesis protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE UNL; 2.12A {Shewanella loihica}
Probab=25.72 E-value=57 Score=25.89 Aligned_cols=30 Identities=20% Similarity=0.372 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCchHHHHHH
Q 025520 93 HAIDITREAIKEGADAVIAVGGDGTLHEVVN 123 (251)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln 123 (251)
+..++++++.+.+.+-|+|.|| ++|.+++.
T Consensus 114 ~l~~~l~~L~~~~~~~i~v~GG-~~l~~~l~ 143 (197)
T 3ky8_A 114 KLVDIIADLNAKGFNELYIDGG-VTIQNFLK 143 (197)
T ss_dssp CHHHHHHHHHHTTCCEEEEESH-HHHHHHHH
T ss_pred CHHHHHHHHHhCCCCeEEEEeh-HHHHHHHh
Confidence 3445555555567778888888 45554444
No 226
>3sgw_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, valley fever; 1.70A {Coccidioides immitis} PDB: 3sdw_A 3qd5_A*
Probab=25.71 E-value=1.4e+02 Score=23.67 Aligned_cols=41 Identities=10% Similarity=-0.044 Sum_probs=11.5
Q ss_pred cCCCCCCCCCCCCCCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHh
Q 025520 30 DLSPNPISHGAASSSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRS 75 (251)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~ 75 (251)
..|.+++.+.++......+ .+|-+-++|- ..-+.++..|++
T Consensus 13 ~~~~~~~~~~~~~~~~~Mk-IaIgsDHaG~----~LK~~i~~~L~~ 53 (184)
T 3sgw_A 13 EAQTQGPGSMAATPLPPLR-LAIACDDAGV----SYKEALKAHLSD 53 (184)
T ss_dssp --------------CCCEE-EEEEECGGGH----HHHHHHHHHHTT
T ss_pred eecccCCCccCCCCCCCcE-EEEEECchhH----HHHHHHHHHHHh
Confidence 4455555443333322233 3455665531 222334555654
No 227
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=25.42 E-value=2.3e+02 Score=23.73 Aligned_cols=78 Identities=8% Similarity=-0.003 Sum_probs=43.7
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEE--EEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNIC--ESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~--~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
..+++.+|.... ..+....+.+...+++.. .++. ........+....+.++...+.|+|++.+-......++
T Consensus 141 g~~~vaii~~~~---~~g~~~~~~~~~~~~~~G---~~v~~~~~~~~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~ 214 (379)
T 3n0w_A 141 GYKTWFLMLPDA---AYGDLMNAAIRRELTAGG---GQIVGSVRFPFETQDFSSYLLQAKASGAQLIVSTSGGAANINIM 214 (379)
T ss_dssp TCCEEEEEEESS---HHHHHHHHHHHHHHHHHT---CEEEEEEEECTTCCCCHHHHHHHHHHTCSEEEECCCHHHHHHHH
T ss_pred CCcEEEEEeccc---chhHHHHHHHHHHHHHcC---CEEEEEEeCCCCCCCHHHHHHHHHHCCCCEEEEecccchHHHHH
Confidence 578898886322 122334455566666542 3332 12222334556667777777899887654334455677
Q ss_pred HHHHhC
Q 025520 123 NGFFSA 128 (251)
Q Consensus 123 n~l~~~ 128 (251)
..+...
T Consensus 215 ~~~~~~ 220 (379)
T 3n0w_A 215 KQAREF 220 (379)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 776543
No 228
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=25.31 E-value=2.5e+02 Score=24.01 Aligned_cols=66 Identities=9% Similarity=-0.009 Sum_probs=35.7
Q ss_pred ccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCch-------HHHHHHHHHhCCcccccccccccCCceEEEecCCCh
Q 025520 81 CNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGT-------LHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTG 153 (251)
Q Consensus 81 ~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGT-------l~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTg 153 (251)
.+..++.+...+...++++.. .++-|+-||||. |.++++-.-.. .....+.|+++--|.-
T Consensus 99 ~D~iviR~~~~~~~~~la~~~----~~vPVINag~G~~~HPtQaLaDl~Ti~e~~---------g~l~gl~va~vGD~~~ 165 (310)
T 3csu_A 99 VDAIVMRHPQEGAARLATEFS----GNVPVLNAGDGSNQHPTQTLLDLFTIQETQ---------GRLDNLHVAMVGDLKY 165 (310)
T ss_dssp CSEEEEEESSTTHHHHHHHHC----TTCCEEEEEETTSCCHHHHHHHHHHHHHHH---------SCSSSCEEEEESCTTT
T ss_pred CCEEEEECCChhHHHHHHHhc----CCCCEEcCccCCCCCchHHHHHHHHHHHHh---------CCcCCcEEEEECCCCC
Confidence 345556665555555554321 146689999984 44444322111 1234688999877653
Q ss_pred hHHhhh
Q 025520 154 SDFART 159 (251)
Q Consensus 154 N~fa~~ 159 (251)
|..+++
T Consensus 166 ~rva~S 171 (310)
T 3csu_A 166 GRTVHS 171 (310)
T ss_dssp CHHHHH
T ss_pred CchHHH
Confidence 444444
No 229
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=25.07 E-value=2.9e+02 Score=23.76 Aligned_cols=81 Identities=11% Similarity=0.033 Sum_probs=45.2
Q ss_pred CCCeEEEEEcCCCCCCCh-hhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRT-GKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVN 123 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~-~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln 123 (251)
..+++.+|+.-.. -++. ....+.+...+++.. ..+...........+...+++++. .+.|+|+++|-...+..++.
T Consensus 153 ~w~~v~ii~~d~~-~g~~~~~~~~~~~~~~~~~g-~~v~~~~~~~~~~~d~~~~l~~i~-~~~~vii~~~~~~~~~~~~~ 229 (441)
T 1jdp_A 153 HWSRAALVYSDDK-LERNCYFTLEGVHEVFQEEG-LHTSIYSFDETKDLDLEDIVRNIQ-ASERVVIMCASSDTIRSIML 229 (441)
T ss_dssp TCCEEEEEEECCS-SSCHHHHHHHHHHHHHHHHT-CEEEEEEECTTSCCCHHHHHHHHH-HHCSEEEEESCHHHHHHHHH
T ss_pred CCcEEEEEEEcCC-cccchHHHHHHHHHHHHhcC-cEEEEEEecCCcccCHHHHHHHhh-cCCcEEEEecCHHHHHHHHH
Confidence 4678888885332 2221 114455556666542 112222222223345667777776 67888888876666777777
Q ss_pred HHHhC
Q 025520 124 GFFSA 128 (251)
Q Consensus 124 ~l~~~ 128 (251)
.+...
T Consensus 230 ~~~~~ 234 (441)
T 1jdp_A 230 VAHRH 234 (441)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 66543
No 230
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=24.62 E-value=3e+02 Score=22.81 Aligned_cols=77 Identities=6% Similarity=0.037 Sum_probs=48.5
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEE--ecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICES--LTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~--~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vl 122 (251)
..+++.||+.-..+. ...+.+.+.+.+. +..+... ......+...+.+++...+.++|++.+..-....++
T Consensus 129 ~w~~vaii~~~d~~~----~~~~~~~~~~~~~---g~~v~~~~~~~~~~~d~~~~l~~i~~~~~~vIv~~~~~~~~~~il 201 (389)
T 4gpa_A 129 EWNCFVFLYDTDRGY----SILQAIMEKAGQN---GWHVSAICVENFNDVSYRQLLEELDRRQEKKFVIDCEIERLQNIL 201 (389)
T ss_dssp TCCEEEEEECSTTCS----HHHHHHHHHHHTT---TCEEEEEECTTCCHHHHHHHHHHHHHHTCCEEEEECCHHHHHHHH
T ss_pred CCcEEEEEEecchhh----HHHHHHHHHHHhc---CceEEEEeecCCcchhHHHHHHHhhccCCcEEEEEechhHHHHHH
Confidence 567888888644321 2234444445443 3333332 233344666777777778899999999888888888
Q ss_pred HHHHhC
Q 025520 123 NGFFSA 128 (251)
Q Consensus 123 n~l~~~ 128 (251)
....+.
T Consensus 202 ~~a~~~ 207 (389)
T 4gpa_A 202 EQIVSV 207 (389)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 877654
No 231
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=24.32 E-value=3.2e+02 Score=23.33 Aligned_cols=78 Identities=9% Similarity=0.048 Sum_probs=45.5
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNG 124 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~ 124 (251)
..+++.+|+.... .+....+.+...+++. +.++.... ..+.+...+++++...+.|+|++++-......++..
T Consensus 153 g~~~v~ii~~~~~---~g~~~~~~~~~~~~~~---g~~v~~~~-~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~ 225 (433)
T 4f11_A 153 QWKRVGTLTQDVQ---RFSEVRNDLTGVLYGE---DIEISDTE-SFSNDPCTSVKKLKGNDVRIILGQFDQNMAAKVFCC 225 (433)
T ss_dssp TCCEEEEEEESSH---HHHHHHHHHHHHSSSS---SCEEEEEE-EESSCCHHHHHHHHHTTCCEEEEECCHHHHHHHHHH
T ss_pred CCcEEEEEEecch---hhHHHHHHHHHHHHHc---CceEEEEe-ccCcCHHHHHHHHhhCCCeEEEEeCcHHHHHHHHHH
Confidence 5688998886431 1222233333333332 23332211 112345566777777889999998887788888888
Q ss_pred HHhCC
Q 025520 125 FFSAG 129 (251)
Q Consensus 125 l~~~~ 129 (251)
+.+.+
T Consensus 226 a~~~g 230 (433)
T 4f11_A 226 AYEEN 230 (433)
T ss_dssp HHHTT
T ss_pred HHHcC
Confidence 76543
No 232
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=24.21 E-value=2.8e+02 Score=22.23 Aligned_cols=75 Identities=7% Similarity=0.078 Sum_probs=38.3
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcC-CCccEEEEe--cCC-ccHHHHHHHHHHHcCCCEEEEEeCCch-HHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESL--TSG-PSHAIDITREAIKEGADAVIAVGGDGT-LHEV 121 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~-~~~~~~~~~--t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGT-l~~v 121 (251)
+.+.|++.... ...|..+..-++..+. .++++.+.. +.. .....+..+.+...+.|.|++.+.|.+ +.+.
T Consensus 2 ~~Igvi~~~~~-----~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~ 76 (288)
T 1gud_A 2 AEYAVVLKTLS-----NPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMP 76 (288)
T ss_dssp CEEEEEESCSS-----SHHHHHHHHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHH
T ss_pred cEEEEEeCCCC-----chHHHHHHHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHH
Confidence 35666663221 2455554443332221 135554444 322 223334456666678999999887754 3355
Q ss_pred HHHHH
Q 025520 122 VNGFF 126 (251)
Q Consensus 122 ln~l~ 126 (251)
+..+.
T Consensus 77 ~~~~~ 81 (288)
T 1gud_A 77 VARAW 81 (288)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 233
>1b4b_A Arginine repressor; core, oligomerization domain, helix TUR; HET: ARG; 2.20A {Geobacillus stearothermophilus} SCOP: d.74.2.1
Probab=23.63 E-value=63 Score=21.26 Aligned_cols=32 Identities=25% Similarity=0.124 Sum_probs=23.7
Q ss_pred ecCCccHHHHHHHHHHHc-CCCEEEEEeCCchH
Q 025520 87 LTSGPSHAIDITREAIKE-GADAVIAVGGDGTL 118 (251)
Q Consensus 87 ~t~~~~~a~~~~~~~~~~-~~d~ivv~GGDGTl 118 (251)
..+.|+.|..++..+... -.+++-.+.||-|+
T Consensus 18 ikT~pG~A~~va~~iD~~~~~eI~GTIAGDDTI 50 (71)
T 1b4b_A 18 LRTLPGNAHAIGVLLDNLDWDEIVGTICGDDTC 50 (71)
T ss_dssp EEESTTCHHHHHHHHHHHCCTTEEEEEECSSEE
T ss_pred EEeCCCcHHHHHHHHHhCCCCCeEEEEeeCCEE
Confidence 334688888888887754 34688888899886
No 234
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=23.57 E-value=1.6e+02 Score=23.38 Aligned_cols=96 Identities=14% Similarity=0.001 Sum_probs=44.1
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHHHHH
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFF 126 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln~l~ 126 (251)
+++.||=.. |+....+...+.+.+.|+.. ++++.+..... .+..+..+.+. +.|.|++.||+=+ ..+..|.
T Consensus 28 ~~i~~Ip~A-s~~~~~~~~~~s~~~a~~~l---G~~v~~~~i~~-~~~~~~~~~l~--~ad~I~l~GG~~~--~l~~~L~ 98 (206)
T 3l4e_A 28 KTVTFIPTA-STVEEVTFYVEAGKKALESL---GLLVEELDIAT-ESLGEITTKLR--KNDFIYVTGGNTF--FLLQELK 98 (206)
T ss_dssp CEEEEECGG-GGGCSCCHHHHHHHHHHHHT---TCEEEECCTTT-SCHHHHHHHHH--HSSEEEECCSCHH--HHHHHHH
T ss_pred CEEEEECCC-CCCCCHHHHHHHHHHHHHHc---CCeEEEEEecC-CChHHHHHHHH--hCCEEEECCCCHH--HHHHHHH
Confidence 566665332 33222234556677777764 24444332222 22333333333 4788888776543 4455443
Q ss_pred hCCcccccccccccCCceEEEecCCC
Q 025520 127 SAGKLVTNHNRESAHSTALGLIPLGT 152 (251)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~lgilP~GT 152 (251)
+.+ ..+.+........|+.-+-+|.
T Consensus 99 ~~g-l~~~l~~~~~~G~p~~G~sAGa 123 (206)
T 3l4e_A 99 RTG-ADKLILEEIAAGKLYIGESAGA 123 (206)
T ss_dssp HHT-HHHHHHHHHHTTCEEEEETHHH
T ss_pred HCC-hHHHHHHHHHcCCeEEEECHHH
Confidence 322 0000001112346666666666
No 235
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=23.48 E-value=2.2e+02 Score=23.15 Aligned_cols=66 Identities=15% Similarity=0.229 Sum_probs=35.7
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCc----c--EEEEecC-CccHHHHHHHHHHHcCCCEEEEEeC
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDC----N--ICESLTS-GPSHAIDITREAIKEGADAVIAVGG 114 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~----~--~~~~~t~-~~~~a~~~~~~~~~~~~d~ivv~GG 114 (251)
.+.+.|.||.+ .+ +--.....+.++..+++. ++ + +....+. +++...++++++...+.|.|++.|.
T Consensus 6 ~~t~~IGvi~~-~~-~p~~~~~~~gi~~~l~~~---Gy~~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~ 78 (302)
T 2qh8_A 6 AKTAKVAVSQI-VE-HPALDATRQGLLDGLKAK---GYEEGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIAT 78 (302)
T ss_dssp -CCEEEEEEES-SC-CHHHHHHHHHHHHHHHHT---TCCBTTTEEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEESH
T ss_pred cCCcEEEEEEe-cc-ChhHHHHHHHHHHHHHHc---CCCCCCceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCh
Confidence 36678888732 21 111123334455556553 23 3 3323343 2344556677787889999998864
No 236
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=23.32 E-value=1.7e+02 Score=22.17 Aligned_cols=35 Identities=20% Similarity=0.031 Sum_probs=25.6
Q ss_pred EEEEecCCccHHHHHHHHHHHc-CCCEEEEEeCCchH
Q 025520 83 ICESLTSGPSHAIDITREAIKE-GADAVIAVGGDGTL 118 (251)
Q Consensus 83 ~~~~~t~~~~~a~~~~~~~~~~-~~d~ivv~GGDGTl 118 (251)
+.++. +.|+.|..++..+... -.+++-.+.||-||
T Consensus 93 ~vVik-T~PG~A~~va~~iD~~~~~eIlGTIAGDDTI 128 (149)
T 1b4a_A 93 LLVLR-TLPGNAHAIGVLLDNLDWDEIVGTICGDDTC 128 (149)
T ss_dssp EEEEE-ESTTCHHHHHHHHHHHTCTTEEEEEECSSEE
T ss_pred EEEEE-eCCCcHHHHHHHHHhCCCCCeEEEEecCCEE
Confidence 33444 4688999888887754 34688889999886
No 237
>2zfz_A Arginine repressor; DNA binding protein, core, oligomeriza domain, alpha/beta topology, structural genomics; HET: ARG; 1.85A {Mycobacterium tuberculosis} PDB: 3bue_A 3cag_A*
Probab=23.17 E-value=75 Score=21.34 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=25.0
Q ss_pred EecCCccHHHHHHHHHHHc-CCCEEEEEeCCchH
Q 025520 86 SLTSGPSHAIDITREAIKE-GADAVIAVGGDGTL 118 (251)
Q Consensus 86 ~~t~~~~~a~~~~~~~~~~-~~d~ivv~GGDGTl 118 (251)
+..+.|+.|..++..+... -.+++-.+.||-|+
T Consensus 25 VikT~PG~A~~vA~~iD~~~~~eIlGTIAGDDTI 58 (79)
T 2zfz_A 25 VLRTPPGAAHYLASAIDRAALPQVVGTIAGDDTI 58 (79)
T ss_dssp EEECSTTCHHHHHHHHHHHCCTTEEEEEECSSEE
T ss_pred EEEeCCCcHHHHHHHHHhCCCCCeEEEEecCCEE
Confidence 3445789999988888754 34688889999886
No 238
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=23.17 E-value=2.4e+02 Score=21.73 Aligned_cols=98 Identities=16% Similarity=0.114 Sum_probs=54.8
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEe----CCch---
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVG----GDGT--- 117 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~G----GDGT--- 117 (251)
...++.|+.-.-. ..-.++.++..+..|+.+... ++.++.....-|.--.++++.+ +||.||++| |+-.
T Consensus 16 ~~~ri~IV~arfn-~~I~~~Ll~gA~~~l~~~G~~--~i~v~~VPGafEiP~aak~la~-~yDavIaLG~VIrG~T~Hfd 91 (160)
T 2c92_A 16 SGVRLAIVASSWH-GKICDALLDGARKVAAGCGLD--DPTVVRVLGAIEIPVVAQELAR-NHDAVVALGVVIRGQTPHFD 91 (160)
T ss_dssp TTCCEEEEEECSS-HHHHHHHHHHHHHHHHHTTCS--CCEEEEESSGGGHHHHHHHHHT-SCSEEEEEEEEECCSSTHHH
T ss_pred CCCEEEEEEEeCc-HHHHHHHHHHHHHHHHHcCCC--ceEEEECCcHHHHHHHHHHHHh-cCCEEEEEeeeecCCchHHH
Confidence 4457888875321 111123444455566665322 4555656666677666777765 699999988 5443
Q ss_pred --HHHHHHHHHhCCcccccccccccCCceEEEecCCCh
Q 025520 118 --LHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTG 153 (251)
Q Consensus 118 --l~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTg 153 (251)
-+++..+|.+-. -+....+..|+|...|-
T Consensus 92 ~Va~~vs~Gl~~v~-------L~~~vPV~~GVLT~~~~ 122 (160)
T 2c92_A 92 YVCDAVTQGLTRVS-------LDSSTPIANGVLTTNTE 122 (160)
T ss_dssp HHHHHHHHHHHHHH-------HHHTCCEEEEEEEESSH
T ss_pred HHHHHHHHHHHHHH-------hhcCCCEEEEEcCCCCH
Confidence 345566665421 12234455677766654
No 239
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=23.15 E-value=1.7e+02 Score=23.69 Aligned_cols=64 Identities=9% Similarity=0.117 Sum_probs=34.0
Q ss_pred CCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCc---cEEE--EecC-CccHHHHHHHHHHHcCCCEEEEEeC
Q 025520 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDC---NICE--SLTS-GPSHAIDITREAIKEGADAVIAVGG 114 (251)
Q Consensus 46 ~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~---~~~~--~~t~-~~~~a~~~~~~~~~~~~d~ivv~GG 114 (251)
++.|.|+ |.-.+--.....+.++..+.+. ++ ++.+ ..+. +++...++++++...++|.|++.|.
T Consensus 2 ~~~Igvi--~~~~~p~~~~i~~gi~~~l~~~---gy~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~ 71 (295)
T 3lft_A 2 NAKIGVL--QFVSHPSLDLIYKGIQDGLAEE---GYKDDQVKIDFMNSEGDQSKVATMSKQLVANGNDLVVGIAT 71 (295)
T ss_dssp CEEEEEE--ECSCCHHHHHHHHHHHHHHHHT---TCCGGGEEEEEEECTTCHHHHHHHHHHHTTSSCSEEEEESH
T ss_pred ceEEEEE--EccCChhHHHHHHHHHHHHHHc---CCCCCceEEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCc
Confidence 4567766 4321111123334455556553 34 4333 3333 2344556677777788999998863
No 240
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=23.07 E-value=99 Score=25.38 Aligned_cols=51 Identities=22% Similarity=0.139 Sum_probs=32.4
Q ss_pred HHHHHHHcCCCEEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHh
Q 025520 97 ITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA 157 (251)
Q Consensus 97 ~~~~~~~~~~d~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa 157 (251)
.++++...+.|.|+|.|-||.=.+-+..++..- ....+|+.+.|... +.+.
T Consensus 23 ~~~~~~~~GtD~i~vGGs~gvt~~~~~~~v~~i---------k~~~~Pvvlfp~~~-~~v~ 73 (228)
T 3vzx_A 23 QLEILCESGTDAVIIGGSDGVTEDNVLRMMSKV---------RRFLVPCVLEVSAI-EAIV 73 (228)
T ss_dssp HHHHHHTSSCSEEEECCCSCCCHHHHHHHHHHH---------TTSSSCEEEECSCG-GGCC
T ss_pred HHHHHHHcCCCEEEECCcCCCCHHHHHHHHHHh---------hccCCCEEEeCCCH-HHcc
Confidence 344566779999999999987333333333211 12578999999884 4444
No 241
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=22.84 E-value=83 Score=24.39 Aligned_cols=41 Identities=27% Similarity=0.301 Sum_probs=25.3
Q ss_pred EEeCCchHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhhcCC
Q 025520 111 AVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGW 162 (251)
Q Consensus 111 v~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~ 162 (251)
-+|||-|-. ++.-+-.. ....++.+.+|=+|| ||+.+..+.
T Consensus 57 Gi~G~tt~~-~l~r~~~~---------v~~~~Pd~vvi~~G~-ND~~~~~~~ 97 (209)
T 4hf7_A 57 GISGQTSYQ-FLLRFRED---------VINLSPALVVINAGT-NDVAENTGA 97 (209)
T ss_dssp ECTTCCHHH-HHHHHHHH---------TGGGCCSEEEECCCH-HHHTTSSSS
T ss_pred ccCcccHHH-HHHHHHHH---------HHhcCCCEEEEEeCC-CcCcccccc
Confidence 468987643 44433210 112457788899998 999876654
No 242
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrin methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP: c.90.1.1
Probab=22.83 E-value=2.9e+02 Score=22.82 Aligned_cols=55 Identities=20% Similarity=0.134 Sum_probs=34.2
Q ss_pred HHHHHHHHcCCCEEEEEeCC----chHHHHHHHHHhCCcccccccccccCCceEEEecCCCh-hHHhhhcCCC
Q 025520 96 DITREAIKEGADAVIAVGGD----GTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTG-SDFARTFGWR 163 (251)
Q Consensus 96 ~~~~~~~~~~~d~ivv~GGD----GTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTg-N~fa~~lg~~ 163 (251)
+.+.+..+++-+++++.+|| |+-.+.+..+.. ..+++-++|+=|. ...+-.+|+|
T Consensus 83 ~~l~~~~~~G~~Vv~L~~GDP~i~g~g~~l~~~l~~-------------~gi~veviPGiSs~~aa~a~~Gip 142 (280)
T 1s4d_A 83 LRLVELARAGNRVLRLKGGDPFVFGRGGEEALTLVE-------------HQVPFRIVPGITAGIGGLAYAGIP 142 (280)
T ss_dssp HHHHHHHHTTCCEEEEESBCTTSSSSHHHHHHHHHT-------------TTCCEEEECCCCTTTHHHHHTTCC
T ss_pred HHHHHHHhCCCeEEEEcCCCCccccCHHHHHHHHHH-------------CCCCEEEEcCccHHHHHHHHcCCC
Confidence 33334445678899999999 566666666643 2466777776554 3334455554
No 243
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=22.75 E-value=2e+02 Score=20.12 Aligned_cols=44 Identities=16% Similarity=0.023 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCch------HHHHHHHHHhCCcccccccccccCCceEEEec
Q 025520 93 HAIDITREAIKEGADAVIAVGGDGT------LHEVVNGFFSAGKLVTNHNRESAHSTALGLIP 149 (251)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGT------l~~vln~l~~~~~~~~~~~~~~~~~~~lgilP 149 (251)
-+..+.+.+.+.++|.||+.-- |+ +..+...++. ...+|+-++|
T Consensus 94 ~~~~I~~~a~~~~~dliV~G~~-~~~~~~~~~Gs~~~~v~~------------~~~~pVlvv~ 143 (143)
T 3fdx_A 94 PKDKILALAKSLPADLVIIASH-RPDITTYLLGSNAAAVVR------------HAECSVLVVR 143 (143)
T ss_dssp HHHHHHHHHHHTTCSEEEEESS-CTTCCSCSSCHHHHHHHH------------HCSSEEEEEC
T ss_pred hHHHHHHHHHHhCCCEEEEeCC-CCCCeeeeeccHHHHHHH------------hCCCCEEEeC
Confidence 4455566555668887777643 22 2345555554 3468888776
No 244
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=22.60 E-value=2.9e+02 Score=21.92 Aligned_cols=29 Identities=17% Similarity=0.158 Sum_probs=17.1
Q ss_pred CeEEEEE-cCCCCCCChhhHHHHHHHHHHhh
Q 025520 47 RDLVFVV-NPRGASGRTGKEWKKLLPYLRSR 76 (251)
Q Consensus 47 ~~i~viv-NP~sg~g~~~~~~~~i~~~L~~~ 76 (251)
+++++|. .|+. .+.+.+..+.+...|+..
T Consensus 2 mkIliI~gS~r~-~s~T~~la~~i~~~l~~~ 31 (242)
T 1sqs_A 2 NKIFIYAGVRNH-NSKTLEYTKRLSSIISSR 31 (242)
T ss_dssp CEEEEEECCCCT-TCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCC-CChHHHHHHHHHHHHHHh
Confidence 4666665 4442 355666667676667653
No 245
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=22.54 E-value=1.2e+02 Score=22.95 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=22.0
Q ss_pred cCCCEEEEEeCCchHHHHHHHHHh
Q 025520 104 EGADAVIAVGGDGTLHEVVNGFFS 127 (251)
Q Consensus 104 ~~~d~ivv~GGDGTl~~vln~l~~ 127 (251)
..+|.+|++.|||=+..++..|.+
T Consensus 107 ~~~d~~vLvSgD~DF~plv~~lr~ 130 (165)
T 2qip_A 107 PDVDRVILVSGDGDFSLLVERIQQ 130 (165)
T ss_dssp GGCSEEEEECCCGGGHHHHHHHHH
T ss_pred ccCCEEEEEECChhHHHHHHHHHH
Confidence 578999999999999999999975
No 246
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=22.41 E-value=2.6e+02 Score=21.47 Aligned_cols=100 Identities=17% Similarity=0.151 Sum_probs=54.6
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHH-cCCCEEEEEe----CCch--
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIK-EGADAVIAVG----GDGT-- 117 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~-~~~d~ivv~G----GDGT-- 117 (251)
...++.|+.-.-- ..-.++.++..+..|+.+.-. .++.++.....-|.--.++++.+ .++|.||++| |+-.
T Consensus 12 ~~~ri~IV~arfn-~~I~~~Ll~ga~~~l~~~Gv~-~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hf 89 (156)
T 1c2y_A 12 QSFRFAIVVARFN-EFVTRRLMEGALDTFKKYSVN-EDIDVVWVPGAYELGVTAQALGKSGKYHAIVCLGAVVKGDTSHY 89 (156)
T ss_dssp TTCCEEEEEESTT-HHHHHHHHHHHHHHHHHTTCC-SCCEEEEESSHHHHHHHHHHHHHTTCCSEEEEEEECCCCSSTHH
T ss_pred CCCEEEEEEEeCc-HHHHHHHHHHHHHHHHHcCCC-CceEEEECCcHHHHHHHHHHHHhcCCCCEEEEecccccCCchHH
Confidence 3456777775321 111123344445566665322 24555555555566666777664 5799999998 5443
Q ss_pred ---HHHHHHHHHhCCcccccccccccCCceEEEecCCCh
Q 025520 118 ---LHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTG 153 (251)
Q Consensus 118 ---l~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTg 153 (251)
-+++..+|.+-. -+....+..|+|...|-
T Consensus 90 d~Va~~v~~gl~~v~-------L~~~vPV~~GVLT~~~~ 121 (156)
T 1c2y_A 90 DAVVNSASSGVLSAG-------LNSGVPCVFGVLTCDNM 121 (156)
T ss_dssp HHHHHHHHHHHHHHH-------HHHTSCEEEEEECCSSH
T ss_pred HHHHHHHHHHHHHHH-------hhcCCCEEEEEeCCCCH
Confidence 345566665421 12234455677766654
No 247
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=22.35 E-value=2.7e+02 Score=21.39 Aligned_cols=97 Identities=12% Similarity=0.068 Sum_probs=55.6
Q ss_pred CeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHH------cCCCEEEEEe----CCc
Q 025520 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIK------EGADAVIAVG----GDG 116 (251)
Q Consensus 47 ~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~------~~~d~ivv~G----GDG 116 (251)
.++.|+.-.-- ..-.++.++..+..|+.+. .++.++.....-+.--.++++.+ .++|.||++| |+-
T Consensus 13 ~ri~IV~arfn-~~I~~~Ll~gA~~~l~~~G---~~i~v~~VPGafEiP~aa~~la~~~~~~~~~yDavIaLG~VIrG~T 88 (157)
T 2i0f_A 13 PHLLIVEARFY-DDLADALLDGAKAALDEAG---ATYDVVTVPGALEIPATISFALDGADNGGTEYDGFVALGTVIRGET 88 (157)
T ss_dssp CEEEEEEECSS-HHHHHHHHHHHHHHHHHTT---CEEEEEEESSGGGHHHHHHHHHHHHHTTCCCCSEEEEEEEEECCSS
T ss_pred cEEEEEEEeCc-HHHHHHHHHHHHHHHHHcC---CCeEEEECCcHHHHHHHHHHHHhhccccCCCCCEEEEeeeeecCCc
Confidence 56777764321 1111233444455666543 34555666666677777777664 5799999988 543
Q ss_pred h-----HHHHHHHHHhCCcccccccccccCCceEEEecCCChh
Q 025520 117 T-----LHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGS 154 (251)
Q Consensus 117 T-----l~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN 154 (251)
. -+++..+|.+-. -+....+..|+|...|--
T Consensus 89 ~Hfd~Va~~v~~gl~~vs-------l~~~vPV~~GVLT~~~~e 124 (157)
T 2i0f_A 89 YHFDIVSNESCRALTDLS-------VEESIAIGNGILTVENEE 124 (157)
T ss_dssp STTHHHHHHHHHHHHHHH-------HHTTCCEEEEEEEESSHH
T ss_pred hHHHHHHHHHHHHHHHHH-------hhcCCCEEEEEeCCCCHH
Confidence 2 456666676421 122345567888776543
No 248
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=22.35 E-value=1.2e+02 Score=25.77 Aligned_cols=12 Identities=25% Similarity=0.565 Sum_probs=9.5
Q ss_pred CCCEEEEEeCCc
Q 025520 105 GADAVIAVGGDG 116 (251)
Q Consensus 105 ~~d~ivv~GGDG 116 (251)
+.|.|++.|||-
T Consensus 110 ~ad~I~v~GGnt 121 (291)
T 3en0_A 110 QCTGIFMTGGDQ 121 (291)
T ss_dssp HCSEEEECCSCH
T ss_pred cCCEEEECCCCH
Confidence 478888888885
No 249
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=22.20 E-value=3.1e+02 Score=22.10 Aligned_cols=75 Identities=15% Similarity=0.081 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEe-CCc-----hHHHHHHHHHhCCccccccc
Q 025520 63 GKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVG-GDG-----TLHEVVNGFFSAGKLVTNHN 136 (251)
Q Consensus 63 ~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~G-GDG-----Tl~~vln~l~~~~~~~~~~~ 136 (251)
.+.++++...+... ++++.........-+..+.+.+...++|.||+.- |.+ .+..+...++.
T Consensus 50 ~~~l~~~~~~~~~~---~~~~~~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~vl~--------- 117 (290)
T 3mt0_A 50 SAALNDLAQELREE---GYSVSTNQAWKDSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTPDDWKLLR--------- 117 (290)
T ss_dssp HHHHHHHHHHHHHT---TCCEEEEEECSSSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCCHHHHHHHH---------
T ss_pred HHHHHHHHHHHhhC---CCeEEEEEEeCCCHHHHHHHHHHhcCCCEEEEecccCCchhhcccCHHHHHHHh---------
Confidence 44455555555432 3344333222222345556665566788766542 222 13455556654
Q ss_pred ccccCCceEEEecCCC
Q 025520 137 RESAHSTALGLIPLGT 152 (251)
Q Consensus 137 ~~~~~~~~lgilP~GT 152 (251)
...+|+-++|.+.
T Consensus 118 ---~~~~PVlvv~~~~ 130 (290)
T 3mt0_A 118 ---FAPCPVLMTKTAR 130 (290)
T ss_dssp ---HCSSCEEEECCCS
T ss_pred ---cCCCCEEEecCCC
Confidence 3468999999544
No 250
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=21.70 E-value=31 Score=29.57 Aligned_cols=17 Identities=41% Similarity=0.696 Sum_probs=11.6
Q ss_pred CEEEEEeCCchHH-HHHH
Q 025520 107 DAVIAVGGDGTLH-EVVN 123 (251)
Q Consensus 107 d~ivv~GGDGTl~-~vln 123 (251)
+++|+.||||++. +++.
T Consensus 86 ~VLIiGgGdG~~~revlk 103 (294)
T 3o4f_A 86 HVLIIGGGDGAMLREVTR 103 (294)
T ss_dssp EEEEESCTTSHHHHHHHT
T ss_pred eEEEECCCchHHHHHHHH
Confidence 5788888999654 4443
No 251
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=21.58 E-value=2.1e+02 Score=22.41 Aligned_cols=81 Identities=9% Similarity=0.117 Sum_probs=42.9
Q ss_pred CCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecC-CccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHH
Q 025520 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTS-GPSHAIDITREAIKEGADAVIAVGGDGTLHEVVN 123 (251)
Q Consensus 45 ~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln 123 (251)
..+++.+|..+.........+++-+...+++.. ..+..+... +...+.+.++++....++.| ++..|.....+++
T Consensus 114 G~~~I~~i~~~~~~~~~~~~R~~gf~~al~~~g---~~~~~~~~~~~~~~~~~~~~~~l~~~~~ai-~~~~d~~A~g~~~ 189 (255)
T 1byk_A 114 GHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHK---LHPVAALPGLAMKQGYENVAKVITPETTAL-LCATDTLALGASK 189 (255)
T ss_dssp TCCCEEEECCCTTSTTTTHHHHHHHHHHHHHTT---CCCEEECCCSCHHHHHHHSGGGCCTTCCEE-EESSHHHHHHHHH
T ss_pred CCCeEEEEecCCCCcccHHHHHHHHHHHHHHcC---CCcceeecCCccchHHHHHHHHhcCCCCEE-EEeChHHHHHHHH
Confidence 456788776542222233445555666666542 222222222 23344444555444456654 4577888888888
Q ss_pred HHHhCC
Q 025520 124 GFFSAG 129 (251)
Q Consensus 124 ~l~~~~ 129 (251)
.+.+.+
T Consensus 190 al~~~g 195 (255)
T 1byk_A 190 YLQEQR 195 (255)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 886543
No 252
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=21.57 E-value=2.4e+02 Score=21.47 Aligned_cols=45 Identities=18% Similarity=0.326 Sum_probs=25.1
Q ss_pred HHHHHHhhcCCCccEE--EEecCCccHHHHHHHHHH-HcCCCEEEEEeCCc
Q 025520 69 LLPYLRSRLSVDCNIC--ESLTSGPSHAIDITREAI-KEGADAVIAVGGDG 116 (251)
Q Consensus 69 i~~~L~~~~~~~~~~~--~~~t~~~~~a~~~~~~~~-~~~~d~ivv~GGDG 116 (251)
+...|.+. ++++. .+..++++...+..++.. ..++|+|+..||=|
T Consensus 45 L~~~L~~~---G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~g 92 (178)
T 3iwt_A 45 IKQLLIEN---GHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTG 92 (178)
T ss_dssp HHHHHHHT---TCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCS
T ss_pred HHHHHHHC---CCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCcc
Confidence 45566654 23332 233444444444444433 35789999999966
No 253
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=21.40 E-value=1.6e+02 Score=28.38 Aligned_cols=100 Identities=12% Similarity=0.066 Sum_probs=53.8
Q ss_pred CCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCC-c------
Q 025520 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGD-G------ 116 (251)
Q Consensus 44 ~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGD-G------ 116 (251)
-..+++.|++.+.- |-.......+...|+.. ++++.++-.+....+.....+.....+|.||+.||- |
T Consensus 527 l~g~kVaIL~a~~d--Gfe~~E~~~~~~~L~~a---G~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~ 601 (688)
T 2iuf_A 527 LDGLKVGLLASVNK--PASIAQGAKLQVALSSV---GVDVVVVAERXANNVDETYSASDAVQFDAVVVADGAEGLFGADS 601 (688)
T ss_dssp CTTCEEEEECCTTC--HHHHHHHHHHHHHHGGG---TCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTCGGGCCTTT
T ss_pred CCCCEEEEEecCCC--CCcHHHHHHHHHHHHHC---CCEEEEEeccCCcccccchhcCCccccCeEEecCCCcccccccc
Confidence 34578999987421 21222334455666653 456655544322111111112223579999999993 3
Q ss_pred ------------------hHHHHHHHHHhCCcccccccccccCCceEEEecCCChhHHhhhcCCC
Q 025520 117 ------------------TLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWR 163 (251)
Q Consensus 117 ------------------Tl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~fa~~lg~~ 163 (251)
.+.+++...++ ...+||.|-.|.. +-...|+.
T Consensus 602 ~~~~~~~~~~~~~L~~~~~~~~~v~~~~~-------------~gKpIaAIc~ap~--vL~~aGi~ 651 (688)
T 2iuf_A 602 FTVEPSAGSGASTLYPAGRPLNILLDAFR-------------FGKTVGALGSGSD--ALESGQIS 651 (688)
T ss_dssp TTCCCCTTSCCCSSSCTTHHHHHHHHHHH-------------HTCEEEEEGGGHH--HHHHTTCC
T ss_pred cccccccccchhhcccChHHHHHHHHHHH-------------cCCEEEEECchHH--HHHHcCCC
Confidence 35555655553 3568888877764 33445664
No 254
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=21.15 E-value=2.2e+02 Score=23.68 Aligned_cols=68 Identities=10% Similarity=0.032 Sum_probs=36.2
Q ss_pred CCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeC
Q 025520 43 SSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGG 114 (251)
Q Consensus 43 ~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GG 114 (251)
+.+.+.+.+++...+ +.-....++.++..+++. ++++.+..+.......+..+.+...+.|.||+.+-
T Consensus 61 ~~~~~~Igvi~~~~~-~~~~~~~~~gi~~~a~~~---g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 128 (333)
T 3jvd_A 61 EHRSALVGVIVPDLS-NEYYSESLQTIQQDLKAA---GYQMLVAEANSVQAQDVVMESLISIQAAGIIHVPV 128 (333)
T ss_dssp ---CCEEEEEESCSS-SHHHHHHHHHHHHHHHHH---TCEEEEEECCSHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred cCCCCEEEEEeCCCc-ChHHHHHHHHHHHHHHHC---CCEEEEECCCChHHHHHHHHHHHhCCCCEEEEcch
Confidence 345667888775432 111122233344444443 45665555554334445666777778999998876
No 255
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=21.04 E-value=2.4e+02 Score=20.32 Aligned_cols=47 Identities=19% Similarity=0.245 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHcCCCEEEEEe-CCch-----HHHHHHHHHhCCcccccccccccCCceEEEecCC
Q 025520 93 HAIDITREAIKEGADAVIAVG-GDGT-----LHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLG 151 (251)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~G-GDGT-----l~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~G 151 (251)
-+..+.+.+.+.++|.||+.- |-+. +..+...+++ ...+|+-++|-.
T Consensus 108 ~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~vl~------------~~~~pVlvv~~~ 160 (162)
T 1mjh_A 108 PHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIK------------KSNKPVLVVKRK 160 (162)
T ss_dssp HHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHH------------HCCSCEEEECCC
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCccceEecchHHHHHH------------hCCCCEEEEeCC
Confidence 345555555566788776642 2332 3446666664 246899998854
No 256
>3nut_A Precorrin-3 methylase; vitamin B12 pathway, cobalamin, methyltransferase, transfera; HET: SAH; 2.22A {Rhodobacter capsulatus}
Probab=20.80 E-value=2.5e+02 Score=22.74 Aligned_cols=45 Identities=20% Similarity=0.280 Sum_probs=27.1
Q ss_pred HHHHcCCCEEEEEeCC----chHHHHHHHHHhCCcccccccccccCCceEEEecCCCh
Q 025520 100 EAIKEGADAVIAVGGD----GTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTG 153 (251)
Q Consensus 100 ~~~~~~~d~ivv~GGD----GTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTg 153 (251)
+...++-+++++.+|| |+-.+.+..+.... ....+++-++|+=|.
T Consensus 73 ~~~~~G~~Vv~L~~GDP~i~g~g~~l~~~l~~~~---------~~~gi~veviPGiSS 121 (251)
T 3nut_A 73 EMAAEGRRVVVVSSGDPGVFAMASALFEALEAHP---------EHAGTEIRILPGITA 121 (251)
T ss_dssp HHHHTTCEEEEEESBCTTSSSHHHHHHHHHHHCG---------GGTTCCEEEECCCCH
T ss_pred HHHHCCCeEEEEeCCCcccccCHHHHHHHHHhhc---------ccCCCcEEEECCHHH
Confidence 3345677788888999 66666666664200 012456667776655
No 257
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=20.64 E-value=72 Score=23.59 Aligned_cols=67 Identities=15% Similarity=0.004 Sum_probs=37.3
Q ss_pred EEEEEcCCCCCCChhhHHHHHH-HHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeCCchHHHHHH
Q 025520 49 LVFVVNPRGASGRTGKEWKKLL-PYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVN 123 (251)
Q Consensus 49 i~vivNP~sg~g~~~~~~~~i~-~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTl~~vln 123 (251)
-.++..+..- . ...-..+. ..|+.. ++++ +.........++++.+.+.++|+|.+..=+++-.+.+.
T Consensus 5 ~vvla~~~~d-~--HdiG~~~v~~~l~~~---G~~V--i~lG~~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~ 72 (137)
T 1ccw_A 5 TIVLGVIGSD-C--HAVGNKILDHAFTNA---GFNV--VNIGVLSPQELFIKAAIETKADAILVSSLYGQGEIDCK 72 (137)
T ss_dssp EEEEEEETTC-C--CCHHHHHHHHHHHHT---TCEE--EEEEEEECHHHHHHHHHHHTCSEEEEEECSSTHHHHHT
T ss_pred EEEEEeCCCc-h--hHHHHHHHHHHHHHC---CCEE--EECCCCCCHHHHHHHHHhcCCCEEEEEecCcCcHHHHH
Confidence 4555566432 2 22222333 345553 3454 32322334566677777778999999999988555433
No 258
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=20.50 E-value=2.7e+02 Score=20.68 Aligned_cols=65 Identities=11% Similarity=-0.002 Sum_probs=38.8
Q ss_pred CCCCCeEEEEEcCCCCCCChhhHHHHHHHHHHhhcCCCccEEEEecCCccHHHHHHHHHHHcCCCEEEEEeC
Q 025520 43 SSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGG 114 (251)
Q Consensus 43 ~~~~~~i~vivNP~sg~g~~~~~~~~i~~~L~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GG 114 (251)
..++..+.|| |.+ .......+++...|+.. ++.+.+......+..-..++++...++-+++|+|-
T Consensus 5 ~~~P~Qv~Il--pVs--~~~~~YA~~V~~~L~~~---GiRvevD~~r~~e~Lg~kIR~a~~~kvPy~lVVG~ 69 (130)
T 1v95_A 5 SSGPVDCSVI--VVN--KQTKDYAESVGRKVRDL---GMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQ 69 (130)
T ss_dssp CCCCCTEEEE--ESS--SGGGHHHHHHHHHHHTT---TCCEEEEECTTSSCHHHHHHHHHHHTCSEEEEECH
T ss_pred CCCCCeEEEE--EeC--cchHHHHHHHHHHHHHC---CCEEEEecCCCCCcHHHHHHHHHHcCCCEEEEEec
Confidence 3455555555 222 12335556677778764 45555433222455666778887888999999984
No 259
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=20.27 E-value=51 Score=26.41 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=23.4
Q ss_pred cCCC-EEEEEeCCchHHHHHHHHHhCCcccccccccccCCceEEEec
Q 025520 104 EGAD-AVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIP 149 (251)
Q Consensus 104 ~~~d-~ivv~GGDGTl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP 149 (251)
.-.| .|++-||=||+.|+...+- ...|+.+++
T Consensus 117 ~~sda~IvlpGG~GTL~E~~eal~--------------~~kPV~lln 149 (195)
T 1rcu_A 117 RNADVVVSIGGEIGTAIEILGAYA--------------LGKPVILLR 149 (195)
T ss_dssp TTCSEEEEESCCHHHHHHHHHHHH--------------TTCCEEEET
T ss_pred HhCCEEEEecCCCcHHHHHHHHHh--------------cCCCEEEEC
Confidence 3455 4555577899999999884 346888885
No 260
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=20.19 E-value=3e+02 Score=21.07 Aligned_cols=77 Identities=14% Similarity=0.141 Sum_probs=40.9
Q ss_pred CCeEEEEE-cCCCCCCChhhHHHHHHHH-HHhhcCCCccEEEEecCC------------ccHHHHHHHHHHHcCCCEEEE
Q 025520 46 RRDLVFVV-NPRGASGRTGKEWKKLLPY-LRSRLSVDCNICESLTSG------------PSHAIDITREAIKEGADAVIA 111 (251)
Q Consensus 46 ~~~i~viv-NP~sg~g~~~~~~~~i~~~-L~~~~~~~~~~~~~~t~~------------~~~a~~~~~~~~~~~~d~ivv 111 (251)
|+++++|+ .|+. .+.+.+..+.+... |... +.++.++.... +.+..++.+++. .+|.||+
T Consensus 2 Mmkilii~gS~r~-~g~t~~la~~i~~~~l~~~---g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~--~aD~ii~ 75 (197)
T 2vzf_A 2 TYSIVAISGSPSR-NSTTAKLAEYALAHVLARS---DSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATC--NADGLIV 75 (197)
T ss_dssp CEEEEEEECCSST-TCHHHHHHHHHHHHHHHHS---SEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHH--HCSEEEE
T ss_pred CceEEEEECCCCC-CChHHHHHHHHHHHHHHHC---CCeEEEEEccccCchhhcccccCcHHHHHHHHHHH--HCCEEEE
Confidence 34666666 3432 35566666666666 6653 23444443322 124444445543 4787776
Q ss_pred Ee--CCchHHHHHHHHHhC
Q 025520 112 VG--GDGTLHEVVNGFFSA 128 (251)
Q Consensus 112 ~G--GDGTl~~vln~l~~~ 128 (251)
+- =.|++...+..++++
T Consensus 76 ~sP~y~~~~p~~lK~~ld~ 94 (197)
T 2vzf_A 76 ATPIYKASYTGLLKAFLDI 94 (197)
T ss_dssp EEECBTTBCCHHHHHHHTT
T ss_pred EeCccCCCCCHHHHHHHHh
Confidence 53 135566666666653
No 261
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S-adenosylmethi transferase; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A*
Probab=20.18 E-value=3e+02 Score=22.28 Aligned_cols=54 Identities=15% Similarity=0.147 Sum_probs=29.8
Q ss_pred HHHHHHHcCCCEEEEEeCCc----hHHHHHHHHHhCCcccccccccccCCceEEEecCCChhH-HhhhcCCC
Q 025520 97 ITREAIKEGADAVIAVGGDG----TLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSD-FARTFGWR 163 (251)
Q Consensus 97 ~~~~~~~~~~d~ivv~GGDG----Tl~~vln~l~~~~~~~~~~~~~~~~~~~lgilP~GTgN~-fa~~lg~~ 163 (251)
.+.+..+++-+++++.+||= +..+.+..+.. ..+++-++|+=|.=. .+-.+|++
T Consensus 88 ~i~~~~~~g~~Va~l~~GDP~~~~~~~~l~~~l~~-------------~gi~v~viPGiSs~~aa~a~~G~p 146 (259)
T 2e0n_A 88 SMAEEVQAGRRVAVVSVGDGGFYSTASAIIERARR-------------DGLDCSMTPGIPAFIAAGSAAGMP 146 (259)
T ss_dssp HHHHHHHTTCEEEEEESBCTTBSCTHHHHHHHHHT-------------TTCCEEEECCCCHHHHHHHHTTCC
T ss_pred HHHHHHHCCCeEEEEeCCCCcccccHHHHHHHHHH-------------CCCCEEEeCChhHHHHHHHhcCCC
Confidence 33344455678888889984 44555555542 235566666555422 33444444
Done!