Query 025522
Match_columns 251
No_of_seqs 181 out of 1539
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 06:41:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025522.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025522hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1225 Bcp Peroxiredoxin [Pos 100.0 8.1E-28 1.8E-32 199.4 16.0 150 68-250 3-153 (157)
2 cd02970 PRX_like2 Peroxiredoxi 100.0 8.7E-28 1.9E-32 194.2 14.6 148 74-234 1-149 (149)
3 KOG4498 Uncharacterized conser 99.9 5.8E-28 1.2E-32 203.0 10.7 190 47-251 6-196 (197)
4 cd03018 PRX_AhpE_like Peroxire 99.9 7.4E-24 1.6E-28 172.0 15.6 143 70-248 2-149 (149)
5 TIGR03137 AhpC peroxiredoxin. 99.9 2E-23 4.4E-28 178.0 16.1 143 70-250 3-153 (187)
6 PRK13191 putative peroxiredoxi 99.9 2.9E-23 6.3E-28 181.1 17.2 145 69-250 7-158 (215)
7 PRK00522 tpx lipid hydroperoxi 99.9 3.8E-23 8.3E-28 173.2 17.2 146 69-251 18-167 (167)
8 cd03016 PRX_1cys Peroxiredoxin 99.9 4.8E-23 1E-27 177.9 16.4 144 71-250 1-151 (203)
9 PRK13599 putative peroxiredoxi 99.9 6.4E-23 1.4E-27 178.9 16.7 145 70-251 3-154 (215)
10 PTZ00137 2-Cys peroxiredoxin; 99.9 6.1E-23 1.3E-27 183.6 16.7 147 66-250 65-222 (261)
11 PRK13190 putative peroxiredoxi 99.9 7.4E-23 1.6E-27 176.7 16.6 143 69-250 2-151 (202)
12 cd03014 PRX_Atyp2cys Peroxired 99.9 1E-22 2.3E-27 164.8 15.5 140 70-248 1-143 (143)
13 PF00578 AhpC-TSA: AhpC/TSA fa 99.9 1.3E-22 2.8E-27 159.3 14.6 123 71-230 1-124 (124)
14 PRK13189 peroxiredoxin; Provis 99.9 1.8E-22 4E-27 176.8 17.0 145 69-250 9-160 (222)
15 cd03013 PRX5_like Peroxiredoxi 99.9 1.1E-22 2.3E-27 168.8 14.6 144 71-246 1-154 (155)
16 cd03015 PRX_Typ2cys Peroxiredo 99.9 2.6E-22 5.7E-27 168.4 16.8 142 71-250 1-154 (173)
17 PRK10382 alkyl hydroperoxide r 99.9 2.8E-22 6.1E-27 171.5 16.6 143 70-250 3-153 (187)
18 PRK09437 bcp thioredoxin-depen 99.9 5.9E-22 1.3E-26 162.6 16.9 152 66-250 1-153 (154)
19 PF08534 Redoxin: Redoxin; In 99.9 4.8E-22 1E-26 161.2 14.8 142 70-246 1-146 (146)
20 PRK15000 peroxidase; Provision 99.9 6.9E-22 1.5E-26 170.6 16.4 144 70-250 3-159 (200)
21 cd02971 PRX_family Peroxiredox 99.9 1.1E-21 2.5E-26 157.2 15.2 137 74-245 1-139 (140)
22 cd03017 PRX_BCP Peroxiredoxin 99.9 1.8E-21 3.9E-26 156.2 14.9 138 73-246 1-139 (140)
23 PTZ00253 tryparedoxin peroxida 99.9 2E-20 4.3E-25 160.9 16.2 146 67-250 4-161 (199)
24 PF13911 AhpC-TSA_2: AhpC/TSA 99.8 6.7E-20 1.5E-24 144.1 12.2 114 118-235 1-115 (115)
25 KOG0855 Alkyl hydroperoxide re 99.8 1.5E-19 3.3E-24 149.9 14.7 176 28-250 32-209 (211)
26 cd02969 PRX_like1 Peroxiredoxi 99.8 4.2E-19 9.1E-24 148.3 14.5 136 72-250 1-149 (171)
27 TIGR02661 MauD methylamine deh 99.8 1.4E-18 3E-23 148.4 15.4 144 59-251 36-180 (189)
28 COG0450 AhpC Peroxiredoxin [Po 99.8 1.5E-18 3.2E-23 147.6 14.7 144 69-250 3-158 (194)
29 PTZ00056 glutathione peroxidas 99.8 1.2E-18 2.6E-23 150.2 13.6 89 70-160 14-111 (199)
30 cd00340 GSH_Peroxidase Glutath 99.8 8.1E-19 1.8E-23 144.3 10.5 83 75-160 2-94 (152)
31 PLN02399 phospholipid hydroper 99.8 3.6E-18 7.9E-23 150.9 15.0 89 70-160 74-172 (236)
32 PRK03147 thiol-disulfide oxido 99.8 6.4E-18 1.4E-22 140.3 15.0 138 67-250 33-172 (173)
33 PLN02412 probable glutathione 99.8 3.3E-18 7.2E-23 143.4 13.1 134 70-234 4-150 (167)
34 PRK15412 thiol:disulfide inter 99.8 7.5E-18 1.6E-22 143.3 13.9 121 68-235 38-163 (185)
35 PTZ00256 glutathione peroxidas 99.8 8.2E-18 1.8E-22 142.9 13.2 88 71-159 16-113 (183)
36 cd03012 TlpA_like_DipZ_like Tl 99.8 5.2E-18 1.1E-22 135.0 10.9 106 85-234 13-125 (126)
37 TIGR02540 gpx7 putative glutat 99.8 1.2E-17 2.5E-22 137.5 12.0 84 75-160 2-95 (153)
38 TIGR00385 dsbE periplasmic pro 99.7 3.5E-17 7.7E-22 137.5 13.9 122 65-233 30-156 (173)
39 cd02968 SCO SCO (an acronym fo 99.7 4.5E-17 9.8E-22 130.9 12.3 129 74-232 1-141 (142)
40 cd03010 TlpA_like_DsbE TlpA-li 99.7 1.4E-16 3E-21 126.4 12.7 116 73-235 1-121 (127)
41 cd02967 mauD Methylamine utili 99.7 6.6E-16 1.4E-20 119.8 13.4 82 76-159 1-84 (114)
42 cd02966 TlpA_like_family TlpA- 99.7 2.3E-15 5E-20 113.9 12.6 93 77-171 1-96 (116)
43 cd03011 TlpA_like_ScsD_MtbDsbE 99.6 1.7E-14 3.8E-19 113.2 13.2 117 76-247 1-120 (123)
44 PRK14018 trifunctional thiored 99.6 3.4E-14 7.4E-19 137.9 16.6 121 69-235 32-160 (521)
45 KOG0854 Alkyl hydroperoxide re 99.6 6.9E-14 1.5E-18 117.3 13.6 154 66-251 3-166 (224)
46 PRK10606 btuE putative glutath 99.5 9.6E-14 2.1E-18 118.5 12.9 84 73-159 3-96 (183)
47 TIGR01626 ytfJ_HI0045 conserve 99.5 9.7E-14 2.1E-18 118.5 10.6 132 68-249 22-179 (184)
48 cd03008 TryX_like_RdCVF Trypar 99.5 1.1E-13 2.3E-18 114.2 10.1 68 86-155 16-91 (146)
49 PLN02919 haloacid dehalogenase 99.5 1.4E-13 3E-18 144.0 13.2 137 67-249 389-535 (1057)
50 cd03009 TryX_like_TryX_NRX Try 99.5 9.1E-14 2E-18 110.8 8.0 71 80-152 3-76 (131)
51 cd02964 TryX_like_family Trypa 99.4 9.3E-13 2E-17 105.6 8.5 70 83-155 4-77 (132)
52 PRK13728 conjugal transfer pro 99.4 2.9E-12 6.3E-17 109.1 11.8 104 70-233 50-156 (181)
53 KOG0852 Alkyl hydroperoxide re 99.3 6.9E-11 1.5E-15 99.1 13.7 142 71-250 6-158 (196)
54 COG2077 Tpx Peroxiredoxin [Pos 99.2 2.3E-10 5.1E-15 93.9 12.4 139 67-241 16-157 (158)
55 PF13905 Thioredoxin_8: Thiore 99.2 1.9E-10 4E-15 86.4 10.2 63 97-159 1-66 (95)
56 TIGR02738 TrbB type-F conjugat 99.0 3.9E-09 8.5E-14 87.7 9.8 49 84-141 43-91 (153)
57 KOG0541 Alkyl hydroperoxide re 98.9 6.2E-09 1.3E-13 85.9 9.0 150 67-248 7-170 (171)
58 PF02630 SCO1-SenC: SCO1/SenC; 98.8 1.2E-07 2.6E-12 80.1 12.1 100 71-172 28-138 (174)
59 COG0678 AHP1 Peroxiredoxin [Po 98.8 5.6E-08 1.2E-12 79.9 9.6 106 69-174 3-120 (165)
60 KOG2501 Thioredoxin, nucleored 98.6 9.7E-08 2.1E-12 79.3 6.7 79 76-155 13-94 (157)
61 TIGR02740 TraF-like TraF-like 98.5 2.6E-07 5.6E-12 83.5 7.3 51 86-141 157-207 (271)
62 cd02950 TxlA TRX-like protein 98.5 8.9E-08 1.9E-12 78.3 3.6 83 79-163 2-88 (142)
63 COG1999 Uncharacterized protei 98.5 2.9E-06 6.2E-11 73.8 12.4 139 77-250 49-201 (207)
64 cd02951 SoxW SoxW family; SoxW 98.3 1.7E-06 3.7E-11 68.3 7.4 46 95-141 11-60 (125)
65 cd02985 TRX_CDSP32 TRX family, 98.3 1.9E-06 4.2E-11 66.2 7.4 56 97-154 15-70 (103)
66 cd02948 TRX_NDPK TRX domain, T 98.2 2E-06 4.3E-11 65.9 5.1 61 94-155 14-74 (102)
67 COG0386 BtuE Glutathione perox 98.2 2.3E-05 4.9E-10 65.0 11.1 82 74-158 4-95 (162)
68 cd02999 PDI_a_ERp44_like PDIa 98.1 4.1E-06 8.8E-11 64.3 5.5 63 96-161 17-82 (100)
69 PF05988 DUF899: Bacterial pro 98.1 2.8E-05 6.1E-10 67.5 11.0 94 76-170 47-147 (211)
70 PF00255 GSHPx: Glutathione pe 98.1 1.6E-05 3.4E-10 62.5 8.3 78 77-157 3-90 (108)
71 cd02963 TRX_DnaJ TRX domain, D 98.0 1.2E-05 2.6E-10 62.6 5.5 64 96-159 23-87 (111)
72 PF13098 Thioredoxin_2: Thiore 98.0 2.6E-05 5.6E-10 59.9 7.0 47 96-142 4-52 (112)
73 cd02993 PDI_a_APS_reductase PD 98.0 2.3E-05 4.9E-10 60.7 6.6 65 97-161 21-88 (109)
74 KOG1651 Glutathione peroxidase 98.0 6.2E-05 1.3E-09 63.0 9.3 86 71-158 10-105 (171)
75 cd02956 ybbN ybbN protein fami 97.9 2E-05 4.4E-10 58.9 5.6 64 97-161 12-76 (96)
76 cd03000 PDI_a_TMX3 PDIa family 97.9 4.3E-05 9.4E-10 58.4 6.7 64 96-159 14-80 (104)
77 cd02959 ERp19 Endoplasmic reti 97.9 2.9E-05 6.2E-10 61.4 5.4 70 96-166 18-91 (117)
78 cd03005 PDI_a_ERp46 PDIa famil 97.8 1.7E-05 3.7E-10 59.6 3.4 66 95-161 15-83 (102)
79 cd02949 TRX_NTR TRX domain, no 97.8 2.5E-05 5.4E-10 59.0 4.2 69 94-163 10-79 (97)
80 PRK10996 thioredoxin 2; Provis 97.8 1.1E-05 2.3E-10 65.6 2.3 73 89-162 44-117 (139)
81 cd03003 PDI_a_ERdj5_N PDIa fam 97.8 3.4E-05 7.3E-10 58.5 4.8 47 95-142 16-62 (101)
82 cd02953 DsbDgamma DsbD gamma f 97.8 9E-05 1.9E-09 56.4 7.0 65 95-160 9-81 (104)
83 cd03002 PDI_a_MPD1_like PDI fa 97.8 8.4E-05 1.8E-09 56.6 6.7 65 96-162 17-85 (109)
84 PRK09381 trxA thioredoxin; Pro 97.7 5.6E-05 1.2E-09 58.0 4.8 66 96-162 20-86 (109)
85 cd03004 PDI_a_ERdj5_C PDIa fam 97.7 0.00017 3.6E-09 54.8 7.2 64 97-161 19-83 (104)
86 cd02997 PDI_a_PDIR PDIa family 97.7 3.2E-05 7E-10 58.2 3.2 50 91-140 11-61 (104)
87 PTZ00051 thioredoxin; Provisio 97.7 3.4E-05 7.4E-10 57.8 3.0 48 92-141 13-60 (98)
88 cd02998 PDI_a_ERp38 PDIa famil 97.7 8.3E-05 1.8E-09 55.8 5.2 64 97-161 18-85 (105)
89 TIGR01126 pdi_dom protein disu 97.6 6.9E-05 1.5E-09 56.0 4.4 71 94-164 10-82 (102)
90 cd02962 TMX2 TMX2 family; comp 97.6 8.5E-05 1.8E-09 61.7 5.0 47 97-143 47-93 (152)
91 cd02961 PDI_a_family Protein D 97.6 7.3E-05 1.6E-09 54.9 4.2 67 92-161 10-81 (101)
92 cd02995 PDI_a_PDI_a'_C PDIa fa 97.6 0.00021 4.6E-09 53.6 6.8 65 96-161 17-83 (104)
93 cd02996 PDI_a_ERp44 PDIa famil 97.6 0.00012 2.5E-09 56.3 5.4 50 92-141 13-67 (108)
94 cd03006 PDI_a_EFP1_N PDIa fami 97.6 0.00041 9E-09 54.7 8.0 63 95-159 27-93 (113)
95 cd02984 TRX_PICOT TRX domain, 97.6 0.00012 2.6E-09 54.6 4.8 64 97-161 14-78 (97)
96 cd03001 PDI_a_P5 PDIa family, 97.5 0.00037 8E-09 52.3 7.1 65 96-161 17-82 (103)
97 cd02947 TRX_family TRX family; 97.5 0.0001 2.3E-09 52.9 3.3 64 96-162 9-74 (93)
98 TIGR01295 PedC_BrcD bacterioci 97.5 0.00022 4.9E-09 56.8 5.5 57 93-152 19-83 (122)
99 cd02994 PDI_a_TMX PDIa family, 97.5 0.0004 8.6E-09 52.4 6.5 43 100-142 19-61 (101)
100 TIGR01068 thioredoxin thioredo 97.5 0.00024 5.2E-09 52.7 5.2 65 97-162 14-79 (101)
101 cd02954 DIM1 Dim1 family; Dim1 97.4 0.00022 4.8E-09 56.5 4.9 74 97-171 14-88 (114)
102 PF00085 Thioredoxin: Thioredo 97.4 0.00062 1.3E-08 50.7 7.0 66 97-163 17-83 (103)
103 COG4312 Uncharacterized protei 97.4 0.0015 3.3E-08 57.1 10.1 93 80-172 56-155 (247)
104 PF00837 T4_deiodinase: Iodoth 97.4 0.0014 3E-08 58.2 10.0 62 67-128 71-133 (237)
105 cd02986 DLP Dim1 family, Dim1- 97.4 0.00045 9.8E-09 54.7 6.3 53 96-152 13-65 (114)
106 cd02992 PDI_a_QSOX PDIa family 97.2 0.0017 3.7E-08 50.8 7.4 43 97-139 19-63 (114)
107 COG0526 TrxA Thiol-disulfide i 97.2 0.0021 4.6E-08 46.9 7.3 65 97-162 32-101 (127)
108 PF13899 Thioredoxin_7: Thiore 97.1 0.0038 8.1E-08 45.7 7.9 63 97-160 17-82 (82)
109 cd01659 TRX_superfamily Thiore 97.1 0.0014 3E-08 42.6 5.0 59 101-161 1-63 (69)
110 PHA02278 thioredoxin-like prot 97.0 0.00052 1.1E-08 53.2 2.9 45 95-140 12-56 (103)
111 cd02952 TRP14_like Human TRX-r 97.0 0.0016 3.4E-08 52.0 5.3 43 97-140 21-70 (119)
112 cd02975 PfPDO_like_N Pyrococcu 96.9 0.0027 5.9E-08 49.6 6.5 62 97-160 22-84 (113)
113 KOG0907 Thioredoxin [Posttrans 96.9 0.0019 4.1E-08 50.5 5.2 52 97-153 21-72 (106)
114 TIGR01130 ER_PDI_fam protein d 96.8 0.001 2.3E-08 62.8 4.0 51 92-142 13-65 (462)
115 PTZ00443 Thioredoxin domain-co 96.8 0.0026 5.7E-08 56.0 6.3 59 98-160 53-115 (224)
116 PLN00410 U5 snRNP protein, DIM 96.8 0.0031 6.7E-08 51.9 6.1 49 96-145 22-70 (142)
117 cd02989 Phd_like_TxnDC9 Phosdu 96.8 0.0029 6.3E-08 49.5 5.4 72 96-169 21-93 (113)
118 TIGR00424 APS_reduc 5'-adenyly 96.8 0.004 8.7E-08 60.4 7.3 46 96-141 370-415 (463)
119 TIGR00411 redox_disulf_1 small 96.7 0.0042 9E-08 44.7 5.4 41 100-141 2-42 (82)
120 cd02957 Phd_like Phosducin (Ph 96.7 0.0023 5.1E-08 49.7 4.2 42 98-141 25-66 (113)
121 PLN02309 5'-adenylylsulfate re 96.6 0.0049 1.1E-07 59.8 6.7 64 96-159 364-430 (457)
122 KOG2792 Putative cytochrome C 96.6 0.0097 2.1E-07 53.4 7.7 74 76-151 120-201 (280)
123 cd02955 SSP411 TRX domain, SSP 96.6 0.0074 1.6E-07 48.4 6.4 69 96-165 14-94 (124)
124 PTZ00102 disulphide isomerase; 96.5 0.0035 7.7E-08 59.9 5.1 68 95-163 373-443 (477)
125 cd03065 PDI_b_Calsequestrin_N 96.5 0.0065 1.4E-07 48.5 5.6 64 96-159 26-96 (120)
126 PF09695 YtfJ_HI0045: Bacteria 96.5 0.062 1.3E-06 44.9 11.5 138 70-251 2-159 (160)
127 PTZ00102 disulphide isomerase; 96.4 0.0048 1E-07 59.0 5.1 70 92-162 44-117 (477)
128 cd02982 PDI_b'_family Protein 96.3 0.0079 1.7E-07 45.1 4.7 43 98-141 13-55 (103)
129 PRK00293 dipZ thiol:disulfide 96.2 0.013 2.8E-07 58.3 7.4 67 96-164 473-547 (571)
130 cd02965 HyaE HyaE family; HyaE 96.0 0.01 2.2E-07 46.8 4.4 59 96-155 26-86 (111)
131 KOG0910 Thioredoxin-like prote 96.0 0.011 2.3E-07 49.0 4.5 44 97-141 61-104 (150)
132 PF05176 ATP-synt_10: ATP10 pr 95.9 0.2 4.4E-06 44.9 12.6 73 69-141 95-168 (252)
133 PF13728 TraF: F plasmid trans 95.7 0.034 7.3E-07 48.7 6.8 46 90-140 115-160 (215)
134 COG3118 Thioredoxin domain-con 95.7 0.026 5.7E-07 51.6 6.1 58 97-155 43-100 (304)
135 cd02973 TRX_GRX_like Thioredox 95.5 0.032 6.9E-07 38.7 4.9 39 101-141 3-41 (67)
136 cd02987 Phd_like_Phd Phosducin 95.5 0.038 8.2E-07 46.7 6.1 59 98-159 84-144 (175)
137 PF04592 SelP_N: Selenoprotein 95.4 0.15 3.2E-06 45.2 9.7 79 74-158 9-94 (238)
138 TIGR01130 ER_PDI_fam protein d 95.4 0.024 5.2E-07 53.6 5.1 64 96-161 363-429 (462)
139 TIGR02196 GlrX_YruB Glutaredox 95.4 0.11 2.3E-06 35.8 7.2 47 101-154 2-49 (74)
140 cd02960 AGR Anterior Gradient 94.9 0.021 4.5E-07 46.3 2.7 70 96-167 22-95 (130)
141 TIGR02200 GlrX_actino Glutared 94.8 0.094 2E-06 36.9 5.6 41 101-148 2-42 (77)
142 TIGR02739 TraF type-F conjugat 94.7 0.079 1.7E-06 47.7 6.3 42 96-141 150-191 (256)
143 TIGR00412 redox_disulf_2 small 94.7 0.079 1.7E-06 38.3 5.2 40 102-144 3-42 (76)
144 cd02979 PHOX_C FAD-dependent P 94.7 0.2 4.3E-06 42.1 8.1 90 72-161 1-117 (167)
145 TIGR02187 GlrX_arch Glutaredox 94.4 0.082 1.8E-06 45.8 5.4 43 95-139 18-62 (215)
146 cd02958 UAS UAS family; UAS is 94.4 0.1 2.2E-06 40.3 5.4 65 96-162 16-88 (114)
147 PRK13703 conjugal pilus assemb 94.3 0.079 1.7E-06 47.5 5.2 46 90-140 138-183 (248)
148 smart00594 UAS UAS domain. 94.2 0.18 3.9E-06 39.8 6.5 65 96-162 26-97 (122)
149 PF06110 DUF953: Eukaryotic pr 94.1 0.15 3.3E-06 40.7 6.0 46 96-142 19-70 (119)
150 TIGR02187 GlrX_arch Glutaredox 94.1 0.16 3.5E-06 43.9 6.7 44 96-141 132-175 (215)
151 PF07976 Phe_hydrox_dim: Pheno 94.1 0.04 8.7E-07 46.3 2.7 108 66-173 27-167 (169)
152 PTZ00062 glutaredoxin; Provisi 93.9 0.098 2.1E-06 45.5 4.9 51 98-158 18-69 (204)
153 PRK08294 phenol 2-monooxygenas 93.7 0.36 7.9E-06 48.7 9.2 104 67-170 461-595 (634)
154 cd03026 AhpF_NTD_C TRX-GRX-lik 93.5 0.14 3.1E-06 38.3 4.6 53 96-153 11-63 (89)
155 cd02988 Phd_like_VIAF Phosduci 93.3 0.17 3.6E-06 43.5 5.2 57 98-159 103-161 (192)
156 PRK11200 grxA glutaredoxin 1; 93.1 0.26 5.7E-06 36.0 5.4 38 101-140 3-40 (85)
157 PF14595 Thioredoxin_9: Thiore 93.1 0.034 7.5E-07 44.8 0.7 65 96-162 40-108 (129)
158 TIGR02180 GRX_euk Glutaredoxin 93.0 0.45 9.8E-06 33.9 6.5 56 102-160 2-62 (84)
159 PRK01655 spxA transcriptional 92.9 0.26 5.6E-06 39.7 5.5 65 101-172 2-71 (131)
160 KOG0190 Protein disulfide isom 92.8 0.11 2.3E-06 50.9 3.6 62 90-154 35-98 (493)
161 PF00462 Glutaredoxin: Glutare 92.6 0.69 1.5E-05 31.4 6.6 52 101-159 1-56 (60)
162 PHA02125 thioredoxin-like prot 92.4 0.31 6.8E-06 34.9 4.9 21 101-121 2-22 (75)
163 TIGR02190 GlrX-dom Glutaredoxi 92.0 0.78 1.7E-05 33.1 6.7 52 101-159 10-64 (79)
164 cd03036 ArsC_like Arsenate Red 91.9 0.33 7.3E-06 37.8 4.9 64 102-172 2-70 (111)
165 cd02977 ArsC_family Arsenate R 90.9 0.55 1.2E-05 35.9 5.1 64 101-171 1-69 (105)
166 TIGR00365 monothiol glutaredox 90.7 1.5 3.2E-05 33.3 7.2 58 95-160 10-75 (97)
167 PF13778 DUF4174: Domain of un 90.4 1.6 3.5E-05 34.5 7.4 51 90-140 3-53 (118)
168 cd03419 GRX_GRXh_1_2_like Glut 90.3 1.4 3E-05 31.3 6.6 55 101-160 2-61 (82)
169 PRK12559 transcriptional regul 90.2 0.98 2.1E-05 36.4 6.2 65 101-172 2-71 (131)
170 cd03032 ArsC_Spx Arsenate Redu 90.0 0.87 1.9E-05 35.5 5.6 65 101-172 2-71 (115)
171 TIGR01617 arsC_related transcr 89.9 0.91 2E-05 35.5 5.7 63 102-171 2-69 (117)
172 cd02976 NrdH NrdH-redoxin (Nrd 89.3 2.8 6.1E-05 28.4 7.3 43 101-150 2-45 (73)
173 cd03028 GRX_PICOT_like Glutare 89.0 2.5 5.5E-05 31.4 7.3 61 92-160 3-71 (90)
174 TIGR02194 GlrX_NrdH Glutaredox 88.9 2.3 5.1E-05 29.9 6.7 52 101-159 1-55 (72)
175 cd02066 GRX_family Glutaredoxi 88.8 2.4 5.2E-05 28.5 6.6 45 101-152 2-47 (72)
176 cd03418 GRX_GRXb_1_3_like Glut 88.7 3.4 7.5E-05 28.8 7.5 53 101-160 2-59 (75)
177 cd03029 GRX_hybridPRX5 Glutare 88.2 2.7 5.8E-05 29.5 6.6 53 101-160 3-58 (72)
178 KOG0191 Thioredoxin/protein di 87.9 1 2.2E-05 42.4 5.4 64 97-161 47-111 (383)
179 PRK06184 hypothetical protein; 87.6 4.9 0.00011 39.0 10.2 75 67-169 384-460 (502)
180 COG0695 GrxC Glutaredoxin and 87.4 2.2 4.8E-05 31.2 6.0 53 101-160 3-61 (80)
181 cd03023 DsbA_Com1_like DsbA fa 87.3 0.85 1.8E-05 36.0 4.0 39 96-136 4-42 (154)
182 cd02991 UAS_ETEA UAS family, E 87.2 2.4 5.1E-05 33.4 6.4 65 96-162 16-87 (116)
183 TIGR00995 3a0901s06TIC22 chlor 87.2 0.95 2.1E-05 41.1 4.6 84 69-161 76-161 (270)
184 TIGR02183 GRXA Glutaredoxin, G 87.2 1.8 4E-05 31.8 5.5 58 101-160 2-65 (86)
185 PF13462 Thioredoxin_4: Thiore 87.0 2 4.3E-05 34.4 6.1 49 88-138 5-54 (162)
186 cd03027 GRX_DEP Glutaredoxin ( 86.4 5.3 0.00011 28.0 7.3 52 101-159 3-58 (73)
187 PRK08132 FAD-dependent oxidore 86.4 4.3 9.3E-05 39.9 9.1 117 67-250 425-542 (547)
188 PRK10638 glutaredoxin 3; Provi 86.2 3.8 8.2E-05 29.7 6.6 52 101-159 4-59 (83)
189 KOG3425 Uncharacterized conser 86.0 1.2 2.6E-05 35.8 4.0 45 97-142 26-77 (128)
190 KOG0190 Protein disulfide isom 86.0 0.92 2E-05 44.5 4.1 34 96-129 383-416 (493)
191 PRK13344 spxA transcriptional 86.0 2.9 6.4E-05 33.7 6.5 65 101-172 2-71 (132)
192 TIGR03759 conj_TIGR03759 integ 85.8 3.1 6.7E-05 36.1 6.8 54 96-155 108-162 (200)
193 KOG0908 Thioredoxin-like prote 85.1 1.2 2.6E-05 40.1 4.1 31 96-126 20-50 (288)
194 cd03035 ArsC_Yffb Arsenate Red 85.1 1.9 4.2E-05 33.3 4.8 63 101-171 1-67 (105)
195 TIGR02189 GlrX-like_plant Glut 84.3 2.7 5.9E-05 32.0 5.3 25 95-121 6-30 (99)
196 COG2179 Predicted hydrolase of 83.1 3 6.5E-05 35.4 5.4 43 116-158 48-90 (175)
197 TIGR02181 GRX_bact Glutaredoxi 82.2 5.6 0.00012 28.2 6.0 52 101-159 1-56 (79)
198 PRK10824 glutaredoxin-4; Provi 81.8 8.7 0.00019 30.4 7.4 57 99-161 16-79 (115)
199 PRK10329 glutaredoxin-like pro 81.4 9.5 0.00021 27.8 7.0 45 101-152 3-47 (81)
200 COG4232 Thiol:disulfide interc 80.8 1.5 3.2E-05 43.8 3.2 74 90-163 465-546 (569)
201 KOG0191 Thioredoxin/protein di 79.6 3.6 7.8E-05 38.7 5.3 57 99-155 164-221 (383)
202 cd03007 PDI_a_ERp29_N PDIa fam 79.5 3.5 7.7E-05 32.6 4.5 61 90-154 11-77 (116)
203 PHA03050 glutaredoxin; Provisi 78.4 2.4 5.2E-05 32.9 3.1 22 101-122 15-36 (108)
204 cd03020 DsbA_DsbC_DsbG DsbA fa 74.2 5.6 0.00012 33.6 4.6 26 96-121 76-101 (197)
205 PRK06183 mhpA 3-(3-hydroxyphen 73.8 35 0.00075 33.5 10.6 86 68-169 410-497 (538)
206 PF00875 DNA_photolyase: DNA p 72.5 10 0.00023 30.9 5.7 48 115-162 51-98 (165)
207 KOG1731 FAD-dependent sulfhydr 72.2 3.2 6.9E-05 41.4 2.9 57 98-155 58-116 (606)
208 PRK10026 arsenate reductase; P 71.9 10 0.00022 31.1 5.4 65 101-172 4-73 (141)
209 PRK10877 protein disulfide iso 71.9 8.2 0.00018 34.0 5.2 37 96-136 106-142 (232)
210 cd03034 ArsC_ArsC Arsenate Red 71.5 9.8 0.00021 29.5 5.0 64 102-172 2-70 (112)
211 KOG1752 Glutaredoxin and relat 70.8 7.2 0.00016 30.3 4.1 53 99-159 15-74 (104)
212 cd03019 DsbA_DsbA DsbA family, 69.6 7 0.00015 31.7 4.0 38 96-134 14-51 (178)
213 PF05768 DUF836: Glutaredoxin- 69.0 15 0.00033 26.6 5.3 54 101-160 2-57 (81)
214 PF03190 Thioredox_DsbH: Prote 66.7 19 0.00041 30.3 6.1 69 97-165 37-116 (163)
215 cd01427 HAD_like Haloacid deha 66.5 15 0.00033 27.2 5.2 38 116-153 26-63 (139)
216 PF06053 DUF929: Domain of unk 65.9 8.1 0.00018 34.7 3.9 38 92-129 53-90 (249)
217 PRK13600 putative ribosomal pr 65.3 29 0.00062 26.0 6.2 53 121-173 20-76 (84)
218 PTZ00062 glutaredoxin; Provisi 65.3 9.2 0.0002 33.2 4.1 62 91-160 107-176 (204)
219 COG1393 ArsC Arsenate reductas 62.6 14 0.0003 29.2 4.3 65 101-172 3-72 (117)
220 TIGR00014 arsC arsenate reduct 61.3 26 0.00057 27.2 5.7 64 102-172 2-71 (114)
221 cd02972 DsbA_family DsbA famil 60.8 12 0.00025 26.4 3.4 35 102-137 2-36 (98)
222 KOG0912 Thiol-disulfide isomer 60.6 18 0.00039 33.8 5.1 33 97-129 13-45 (375)
223 PF13192 Thioredoxin_3: Thiore 58.9 31 0.00068 24.4 5.3 47 106-159 7-56 (76)
224 TIGR01662 HAD-SF-IIIA HAD-supe 56.1 45 0.00097 25.7 6.3 39 117-155 28-74 (132)
225 PRK13602 putative ribosomal pr 54.3 58 0.0013 23.9 6.2 52 123-174 20-75 (82)
226 TIGR03556 photolyase_8HDF deox 53.8 81 0.0017 30.7 8.8 49 113-161 51-99 (471)
227 PRK11657 dsbG disulfide isomer 52.9 29 0.00063 30.9 5.2 28 96-123 116-143 (251)
228 TIGR00591 phr2 photolyase PhrI 52.9 85 0.0018 30.2 8.8 46 115-160 76-121 (454)
229 PRK13601 putative L7Ae-like ri 51.9 58 0.0013 24.1 5.8 51 123-173 17-71 (82)
230 cd00860 ThrRS_anticodon ThrRS 51.4 68 0.0015 22.7 6.2 47 116-162 14-62 (91)
231 PRK01018 50S ribosomal protein 50.6 52 0.0011 25.0 5.6 50 123-172 25-79 (99)
232 COG3054 Predicted transcriptio 50.6 37 0.0008 28.6 5.0 32 216-250 149-180 (184)
233 TIGR03765 ICE_PFL_4695 integra 50.2 80 0.0017 24.7 6.5 61 113-174 34-95 (105)
234 COG3019 Predicted metal-bindin 49.6 46 0.001 27.5 5.3 48 98-155 25-72 (149)
235 PF03960 ArsC: ArsC family; I 49.5 56 0.0012 24.9 5.7 57 106-169 3-64 (110)
236 TIGR02765 crypto_DASH cryptoch 49.3 46 0.00099 31.7 6.2 47 115-161 59-105 (429)
237 COG1651 DsbG Protein-disulfide 49.2 33 0.00071 29.7 4.9 45 81-127 70-114 (244)
238 PRK10853 putative reductase; P 48.2 43 0.00094 26.3 4.9 64 101-172 2-69 (118)
239 PF12710 HAD: haloacid dehalog 48.0 30 0.00065 28.1 4.2 35 121-155 96-130 (192)
240 PF04278 Tic22: Tic22-like fam 47.9 19 0.00042 32.7 3.2 84 70-161 70-161 (274)
241 PF11072 DUF2859: Protein of u 47.8 84 0.0018 25.9 6.7 61 113-174 72-133 (142)
242 TIGR02174 CXXU_selWTH selT/sel 46.7 39 0.00084 24.1 4.1 35 213-250 38-72 (72)
243 PRK06683 hypothetical protein; 46.3 84 0.0018 23.1 6.0 51 124-174 21-75 (82)
244 cd00570 GST_N_family Glutathio 45.8 31 0.00068 22.3 3.4 33 103-140 3-35 (71)
245 cd03060 GST_N_Omega_like GST_N 45.4 31 0.00068 23.7 3.4 52 102-160 2-55 (71)
246 PF13419 HAD_2: Haloacid dehal 45.2 36 0.00078 26.6 4.2 35 120-154 83-117 (176)
247 PF00702 Hydrolase: haloacid d 45.0 45 0.00096 27.5 4.9 42 118-159 131-174 (215)
248 cd05017 SIS_PGI_PMI_1 The memb 41.6 95 0.0021 23.8 6.0 52 96-155 42-93 (119)
249 cd03420 SirA_RHOD_Pry_redox Si 41.5 75 0.0016 22.2 4.9 53 102-158 2-57 (69)
250 cd00859 HisRS_anticodon HisRS 40.3 1.2E+02 0.0027 20.9 6.1 46 115-160 13-60 (91)
251 PF02514 CobN-Mg_chel: CobN/Ma 39.9 83 0.0018 34.3 6.9 72 98-172 73-162 (1098)
252 PRK10954 periplasmic protein d 39.8 49 0.0011 28.2 4.4 37 97-135 38-77 (207)
253 PRK12759 bifunctional gluaredo 39.1 68 0.0015 30.7 5.6 41 101-148 4-44 (410)
254 PTZ00106 60S ribosomal protein 39.0 93 0.002 24.2 5.5 49 124-172 35-88 (108)
255 cd03423 SirA SirA (also known 38.7 53 0.0011 23.0 3.7 54 102-159 2-58 (69)
256 cd00738 HGTP_anticodon HGTP an 38.1 98 0.0021 22.0 5.3 45 116-160 17-63 (94)
257 TIGR01428 HAD_type_II 2-haloal 37.4 1E+02 0.0022 25.5 5.9 38 117-154 95-132 (198)
258 cd01460 vWA_midasin VWA_Midasi 37.0 33 0.00071 31.1 3.0 33 123-155 187-238 (266)
259 cd03033 ArsC_15kD Arsenate Red 36.9 80 0.0017 24.6 4.8 64 101-172 2-69 (113)
260 cd03041 GST_N_2GST_N GST_N fam 36.7 1.5E+02 0.0032 20.7 6.5 54 101-160 2-57 (77)
261 TIGR01689 EcbF-BcbF capsule bi 36.7 1.1E+02 0.0023 24.5 5.6 42 118-159 28-86 (126)
262 PF11948 DUF3465: Protein of u 36.2 54 0.0012 26.7 3.7 31 209-240 89-119 (131)
263 PF10262 Rdx: Rdx family; Int 35.6 19 0.00041 25.9 1.0 35 213-250 40-74 (76)
264 cd00861 ProRS_anticodon_short 35.4 1.2E+02 0.0026 21.7 5.4 47 115-161 16-64 (94)
265 PF14968 CCDC84: Coiled coil p 35.3 8.1 0.00018 36.2 -1.2 17 105-121 57-73 (336)
266 PRK07714 hypothetical protein; 35.0 1.5E+02 0.0032 22.4 6.0 50 123-172 27-80 (100)
267 cd01453 vWA_transcription_fact 34.9 1.7E+02 0.0037 24.4 7.0 42 120-161 126-169 (183)
268 cd03040 GST_N_mPGES2 GST_N fam 34.5 52 0.0011 22.8 3.2 20 102-121 3-22 (77)
269 PF02966 DIM1: Mitosis protein 34.5 1.3E+02 0.0028 24.5 5.7 98 96-195 19-121 (133)
270 PF04134 DUF393: Protein of un 34.3 29 0.00062 26.3 1.9 28 106-136 4-31 (114)
271 PF01323 DSBA: DSBA-like thior 34.3 1.4E+02 0.0029 24.3 6.2 41 101-141 2-42 (193)
272 PF01206 TusA: Sulfurtransfera 34.1 1.6E+02 0.0034 20.3 5.6 55 101-159 2-59 (70)
273 TIGR02766 crypt_chrom_pln cryp 34.1 1.1E+02 0.0023 29.7 6.2 46 116-161 50-96 (475)
274 PLN02311 chalcone isomerase 33.7 89 0.0019 28.5 5.2 78 1-79 1-81 (271)
275 KOG3414 Component of the U4/U6 33.6 2.3E+02 0.0049 23.2 6.9 58 96-154 22-79 (142)
276 COG0560 SerB Phosphoserine pho 32.3 79 0.0017 27.3 4.5 38 118-155 81-118 (212)
277 cd03061 GST_N_CLIC GST_N famil 32.0 60 0.0013 24.4 3.3 52 107-165 20-73 (91)
278 PF15632 ATPgrasp_Ter: ATP-gra 31.9 1.9E+02 0.004 27.1 7.2 33 216-250 160-192 (329)
279 PHA00159 endonuclease I 31.9 64 0.0014 26.6 3.6 47 106-155 68-120 (148)
280 cd00858 GlyRS_anticodon GlyRS 31.4 2.4E+02 0.0053 21.6 8.9 47 115-161 40-87 (121)
281 PF01583 APS_kinase: Adenylyls 31.3 1.4E+02 0.0029 24.9 5.6 57 113-169 57-117 (156)
282 TIGR01490 HAD-SF-IB-hyp1 HAD-s 31.2 1.3E+02 0.0027 24.8 5.5 36 120-155 93-128 (202)
283 TIGR01488 HAD-SF-IB Haloacid D 31.2 91 0.002 24.9 4.5 38 118-155 77-114 (177)
284 cd03059 GST_N_SspA GST_N famil 31.0 64 0.0014 21.9 3.1 20 103-122 3-22 (73)
285 TIGR01761 thiaz-red thiazoliny 30.2 81 0.0018 29.6 4.5 46 108-159 10-55 (343)
286 PF01248 Ribosomal_L7Ae: Ribos 29.9 1E+02 0.0023 22.6 4.3 52 121-172 22-78 (95)
287 PLN03098 LPA1 LOW PSII ACCUMUL 29.7 1.3E+02 0.0029 29.4 5.9 66 72-140 273-338 (453)
288 KOG1615 Phosphoserine phosphat 29.7 89 0.0019 27.5 4.3 40 119-158 93-134 (227)
289 PF03129 HGTP_anticodon: Antic 29.0 1.9E+02 0.0041 20.8 5.5 47 115-161 13-62 (94)
290 PRK04175 rpl7ae 50S ribosomal 28.9 2.4E+02 0.0052 22.3 6.4 50 123-172 39-93 (122)
291 TIGR03143 AhpF_homolog putativ 28.0 1.4E+02 0.0029 29.6 5.9 61 96-161 475-538 (555)
292 KOG2741 Dimeric dihydrodiol de 27.8 94 0.002 29.4 4.4 43 111-153 13-55 (351)
293 COG4615 PvdE ABC-type sideroph 27.7 1.7E+02 0.0036 28.8 6.1 53 94-148 464-519 (546)
294 TIGR01684 viral_ppase viral ph 27.6 1.9E+02 0.0042 26.8 6.3 38 117-154 149-186 (301)
295 cd00291 SirA_YedF_YeeD SirA, Y 27.5 1.9E+02 0.0041 19.6 5.1 53 103-159 3-58 (69)
296 KOG4530 Predicted flavoprotein 27.3 76 0.0017 27.0 3.3 29 94-122 116-144 (199)
297 cd01026 TOPRIM_OLD TOPRIM_OLD: 27.2 2.6E+02 0.0056 20.6 6.4 39 125-163 28-67 (97)
298 PF01297 TroA: Periplasmic sol 27.0 1.2E+02 0.0025 26.5 4.8 43 117-159 186-229 (256)
299 PF01380 SIS: SIS domain SIS d 26.7 1.2E+02 0.0026 22.9 4.3 44 99-148 55-98 (131)
300 COG1358 RPL8A Ribosomal protei 26.7 2.4E+02 0.0053 22.2 6.0 50 122-171 35-89 (116)
301 TIGR03677 rpl7ae 50S ribosomal 26.6 2.3E+02 0.005 22.2 5.9 49 123-171 35-88 (117)
302 cd01821 Rhamnogalacturan_acety 26.5 1.9E+02 0.0041 23.8 5.8 42 114-155 91-149 (198)
303 PF09419 PGP_phosphatase: Mito 26.5 1.7E+02 0.0036 24.7 5.4 83 74-158 17-113 (168)
304 COG4469 CoiA Competence protei 26.5 16 0.00036 34.1 -0.8 35 78-117 2-36 (342)
305 PRK00299 sulfur transfer prote 26.5 2.5E+02 0.0055 20.3 5.9 54 98-155 8-63 (81)
306 PRK10200 putative racemase; Pr 26.3 1.3E+02 0.0028 26.3 4.9 57 114-170 59-117 (230)
307 COG3769 Predicted hydrolase (H 26.1 97 0.0021 27.8 3.9 33 123-155 32-64 (274)
308 cd05008 SIS_GlmS_GlmD_1 SIS (S 25.8 1.1E+02 0.0023 23.3 3.9 46 97-148 46-91 (126)
309 cd05013 SIS_RpiR RpiR-like pro 25.4 1.4E+02 0.003 22.5 4.5 44 98-147 61-104 (139)
310 TIGR00338 serB phosphoserine p 25.3 1.2E+02 0.0025 25.5 4.3 36 120-155 91-126 (219)
311 cd02950 TxlA TRX-like protein 25.2 3.5E+02 0.0076 21.5 10.0 32 214-248 77-108 (142)
312 PLN02954 phosphoserine phospha 25.0 1.3E+02 0.0029 25.2 4.7 38 117-154 87-124 (224)
313 cd01018 ZntC Metal binding pro 24.9 2.2E+02 0.0048 25.1 6.2 38 118-155 205-243 (266)
314 PHA03398 viral phosphatase sup 24.7 1.7E+02 0.0036 27.2 5.4 51 117-167 151-204 (303)
315 COG0415 PhrB Deoxyribodipyrimi 24.7 1.9E+02 0.0041 28.5 6.0 45 116-160 54-98 (461)
316 PRK07283 hypothetical protein; 24.6 2.5E+02 0.0054 21.1 5.6 50 123-172 27-80 (98)
317 PF12017 Tnp_P_element: Transp 24.5 1.4E+02 0.0029 26.7 4.7 38 116-153 195-232 (236)
318 PF04800 ETC_C1_NDUFA4: ETC co 24.1 85 0.0018 24.3 2.9 28 134-161 51-79 (101)
319 TIGR01491 HAD-SF-IB-PSPlk HAD- 23.5 1.6E+02 0.0034 24.0 4.7 35 120-154 86-120 (201)
320 TIGR03351 PhnX-like phosphonat 23.1 2E+02 0.0043 24.1 5.3 36 119-154 92-127 (220)
321 PRK08674 bifunctional phosphog 22.8 2.6E+02 0.0057 25.7 6.4 52 96-155 77-128 (337)
322 cd03051 GST_N_GTT2_like GST_N 22.7 78 0.0017 21.2 2.3 21 102-122 2-22 (74)
323 PF02244 Propep_M14: Carboxype 22.5 1.1E+02 0.0024 21.2 3.1 28 132-159 36-64 (74)
324 PRK10674 deoxyribodipyrimidine 22.1 2.4E+02 0.0052 27.4 6.3 47 115-161 55-105 (472)
325 cd03045 GST_N_Delta_Epsilon GS 21.9 1.3E+02 0.0028 20.3 3.3 55 103-162 3-60 (74)
326 PRK15317 alkyl hydroperoxide r 21.9 2.1E+02 0.0047 27.8 6.0 61 96-161 115-178 (517)
327 TIGR01352 tonB_Cterm TonB fami 21.9 1.4E+02 0.0029 20.3 3.4 33 216-250 14-47 (74)
328 TIGR01449 PGP_bact 2-phosphogl 21.8 1.4E+02 0.003 24.7 4.1 36 119-154 90-125 (213)
329 TIGR00213 GmhB_yaeD D,D-heptos 21.7 3.5E+02 0.0076 22.0 6.5 25 117-141 29-53 (176)
330 TIGR01668 YqeG_hyp_ppase HAD s 21.7 2.6E+02 0.0056 22.9 5.6 39 117-155 46-85 (170)
331 PF01011 PQQ: PQQ enzyme repea 21.6 1.6E+02 0.0034 17.9 3.3 23 214-236 9-31 (38)
332 TIGR01670 YrbI-phosphatas 3-de 21.5 1.6E+02 0.0034 23.7 4.2 34 122-155 36-69 (154)
333 PF08821 CGGC: CGGC domain; I 21.5 2.4E+02 0.0052 21.9 5.0 46 88-138 28-73 (107)
334 TIGR00035 asp_race aspartate r 21.4 1.6E+02 0.0034 25.5 4.4 58 115-172 60-119 (229)
335 cd01452 VWA_26S_proteasome_sub 21.2 1.8E+02 0.0039 24.8 4.6 36 117-152 123-162 (187)
336 cd01285 nucleoside_deaminase N 21.1 1.5E+02 0.0033 22.4 3.9 37 212-250 17-58 (109)
337 PRK13288 pyrophosphatase PpaX; 21.0 3.1E+02 0.0066 22.8 6.1 38 117-154 85-122 (214)
338 COG3593 Predicted ATP-dependen 21.0 1.1E+02 0.0023 31.1 3.6 49 116-164 411-461 (581)
339 PRK01122 potassium-transportin 20.9 1.7E+02 0.0037 30.1 5.1 20 118-137 412-431 (679)
340 PRK14010 potassium-transportin 20.7 1.8E+02 0.0039 29.9 5.3 32 123-154 450-481 (673)
341 PRK11869 2-oxoacid ferredoxin 20.6 87 0.0019 28.6 2.7 23 104-126 6-30 (280)
342 cd01017 AdcA Metal binding pro 20.6 2.4E+02 0.0052 25.1 5.6 21 119-139 209-229 (282)
343 TIGR03706 exo_poly_only exopol 20.5 4.1E+02 0.009 23.9 7.2 54 119-172 58-120 (300)
344 PF02844 GARS_N: Phosphoribosy 20.4 73 0.0016 24.6 1.9 29 136-164 46-74 (100)
345 KOG3110 Riboflavin kinase [Coe 20.3 39 0.00084 27.8 0.3 17 28-44 65-82 (153)
346 KOG1422 Intracellular Cl- chan 20.3 1.8E+02 0.0039 25.7 4.4 14 107-120 19-32 (221)
347 PRK11031 guanosine pentaphosph 20.2 4.8E+02 0.01 25.6 8.0 56 118-173 63-127 (496)
348 PRK09545 znuA high-affinity zi 20.2 2.3E+02 0.005 25.9 5.5 39 117-155 239-278 (311)
349 TIGR02949 anti_SigH_actin anti 20.1 1.1E+02 0.0023 22.5 2.7 23 107-129 37-59 (84)
350 COG1636 Uncharacterized protei 20.1 2.5E+02 0.0054 24.5 5.2 61 106-172 9-83 (204)
No 1
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.1e-28 Score=199.38 Aligned_cols=150 Identities=17% Similarity=0.203 Sum_probs=129.2
Q ss_pred CccccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHH
Q 025522 68 SEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (251)
Q Consensus 68 ~~~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f 147 (251)
..++|+.||||+|.|.+|+.|+|+++. ++++||.||+..++|.|..|++++++.+++|++.|+.|++||+|+++.+++|
T Consensus 3 ~l~~G~~aPdF~Lp~~~g~~v~Lsd~~-Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F 81 (157)
T COG1225 3 MLKVGDKAPDFELPDQDGETVSLSDLR-GKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKF 81 (157)
T ss_pred cCCCCCcCCCeEeecCCCCEEehHHhc-CCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHH
Confidence 468899999999999999999999994 5599999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCce-EEEcCChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCccccceEEEEcCCCCe
Q 025522 148 SEQTKFKG-VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSN 226 (251)
Q Consensus 148 ~~~~~~pf-l~sDp~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~ggg~ 226 (251)
+++++++| ++||++++++++||+..... .+.+ . -....+++||||++ |+
T Consensus 82 ~~k~~L~f~LLSD~~~~v~~~ygv~~~k~-----------------~~gk----~--------~~~~~R~TfvId~d-G~ 131 (157)
T COG1225 82 AEKHGLTFPLLSDEDGEVAEAYGVWGEKK-----------------MYGK----E--------YMGIERSTFVIDPD-GK 131 (157)
T ss_pred HHHhCCCceeeECCcHHHHHHhCcccccc-----------------cCcc----c--------cccccceEEEECCC-Ce
Confidence 99999999 99999999999999876421 0000 0 01246799999998 69
Q ss_pred EEEEEeCCCCCCCCCHHHHHHHhh
Q 025522 227 ISYIHRDKEAGDDPDIQDILKACC 250 (251)
Q Consensus 227 I~~~h~~~~~~D~~~~~eIL~al~ 250 (251)
|+++|++....+|+ +++|++++
T Consensus 132 I~~~~~~v~~~~h~--~~vl~~l~ 153 (157)
T COG1225 132 IRYVWRKVKVKGHA--DEVLAALK 153 (157)
T ss_pred EEEEecCCCCcccH--HHHHHHHH
Confidence 99999766666554 58887775
No 2
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.95 E-value=8.7e-28 Score=194.16 Aligned_cols=148 Identities=32% Similarity=0.518 Sum_probs=122.2
Q ss_pred CCCCcEEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCC
Q 025522 74 LLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (251)
Q Consensus 74 ~ap~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~ 153 (251)
.+|+|++.|.+|+.++++++.+++++||+|||++|||+|++|+++|+++++++++.|+.+|+|+.++.+..++|.+++++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~ 80 (149)
T cd02970 1 TAPDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFL 80 (149)
T ss_pred CCCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCC
Confidence 47999999999999999998777899999999999999999999999999999999999999999999888899999999
Q ss_pred ce-EEEcCChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCccccceEEEEcCCCCeEEEEEe
Q 025522 154 KG-VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSNISYIHR 232 (251)
Q Consensus 154 pf-l~sDp~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~ggg~I~~~h~ 232 (251)
+| +++|+++.+|++||+.........+...++ ... ....+ ...++++++||+||+|++ |+|+|.|+
T Consensus 81 ~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~-------~~~----~~~~~-~~~~~~~~~p~~fvid~~-g~i~~~~~ 147 (149)
T cd02970 81 PFPVYADPDRKLYRALGLVRSLPWSNTPRALWK-------NAA----IGFRG-NDEGDGLQLPGVFVIGPD-GTILFAHV 147 (149)
T ss_pred CCeEEECCchhHHHHcCceecCcHHHHHHHHhh-------Ccc----ccccc-CCCCcccccceEEEECCC-CeEEEEec
Confidence 99 999999999999999875432222221111 111 11111 124556899999999998 69999998
Q ss_pred CC
Q 025522 233 DK 234 (251)
Q Consensus 233 ~~ 234 (251)
+.
T Consensus 148 ~~ 149 (149)
T cd02970 148 DR 149 (149)
T ss_pred CC
Confidence 73
No 3
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=5.8e-28 Score=203.04 Aligned_cols=190 Identities=35% Similarity=0.600 Sum_probs=153.2
Q ss_pred ccCCCCcceeecccCCCCCCCCccccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHH
Q 025522 47 LSPRRPSHVIASAVSESPPSVSEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVM 126 (251)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~ 126 (251)
..|+++.+.++|..++-...|-...+... .|..|+.|++++||++++.||.|.|+++|..||+++.+|.++.+-+
T Consensus 6 ~~p~t~~~l~~s~i~pa~sgp~~~q~~a~-----l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~l 80 (197)
T KOG4498|consen 6 VAPSTRLPLIASTIVPARSGPMIGQLPAN-----LDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLL 80 (197)
T ss_pred cCchhhhhHHHhhcccccCCccccccchh-----hhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHH
Confidence 45667777777775544433333322222 6889999999999999999999999999999999999999999999
Q ss_pred HHcCCEEEEEeCCCHHHHHHHHHHhCCce-EEEcCChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccC
Q 025522 127 DASGVALVLIGPGSVEQARTFSEQTKFKG-VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERD 205 (251)
Q Consensus 127 ~~~gv~vVaVs~~~~~~~~~f~~~~~~pf-l~sDp~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~ 205 (251)
++.|+.+|+|++++..+...|.++.+|.. ||.||++.+|+.+++.........+..+...++++ ..+++|+
T Consensus 81 d~~Gv~Li~vg~g~~~~~~~f~~q~~f~gevylD~~~~~Y~~le~k~~~~g~l~~g~~~~~~Ka~--------~~gv~gn 152 (197)
T KOG4498|consen 81 DELGVVLIAVGPGSHVQFEDFWDQTYFSGEVYLDPHRGFYKPLEFKRAEMGFLRPGTDAAAVKAK--------AVGVEGN 152 (197)
T ss_pred HHhCCEEEEEeccceeecchhhcccCcceeEEEcCccceechhhhhcccccccccccHHHHHHHh--------hcccCCC
Confidence 99999999999999999999999999999 99999999999999988532222222222222222 2334453
Q ss_pred cCCCCccccceEEEEcCCCCeEEEEEeCCCCCCCCCHHHHHHHhhC
Q 025522 206 TVSRGGWQQGGIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACCS 251 (251)
Q Consensus 206 ~~~g~~~q~gg~fVid~ggg~I~~~h~~~~~~D~~~~~eIL~al~~ 251 (251)
++|+.+|+||.+++.+| ++|.|.|++++++||+++++||++++.
T Consensus 153 -~~gd~~~~gG~~~V~~G-~~il~~h~dk~~gD~~~i~~Vl~v~~~ 196 (197)
T KOG4498|consen 153 -LEGDGLLSGGVLVVGRG-KKILFIHVDKETGDHVPIDSVLQVVGK 196 (197)
T ss_pred -cccChHHhCCeEEEecC-CeEEEEEecCCCCCCcCHHHHHHHhhc
Confidence 57888999999999998 499999999999999999999999863
No 4
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.92 E-value=7.4e-24 Score=172.03 Aligned_cols=143 Identities=19% Similarity=0.245 Sum_probs=126.6
Q ss_pred cccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHH
Q 025522 70 DTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSE 149 (251)
Q Consensus 70 ~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~ 149 (251)
++|+.+|+|++.|.+|+.++++++.+++++||+|||+.||+.|..++++|+++++++++.|+++|+|+.++.+.+++|++
T Consensus 2 ~~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~ 81 (149)
T cd03018 2 EVGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAE 81 (149)
T ss_pred CCCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHH
Confidence 57999999999999999999999844378889999999999999999999999999999999999999999999999999
Q ss_pred HhCCce-EEEcCC--hhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCccccceEEEEcCCCCe
Q 025522 150 QTKFKG-VYADPN--HSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSN 226 (251)
Q Consensus 150 ~~~~pf-l~sDp~--~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~ggg~ 226 (251)
+++++| +++|++ +++++.||+..... +...+.+||+|++ |+
T Consensus 82 ~~~~~~~~~~D~~~~~~~~~~~g~~~~~~-----------------------------------~~~~~~~~lid~~-G~ 125 (149)
T cd03018 82 ENGLTFPLLSDFWPHGEVAKAYGVFDEDL-----------------------------------GVAERAVFVIDRD-GI 125 (149)
T ss_pred hcCCCceEecCCCchhHHHHHhCCccccC-----------------------------------CCccceEEEECCC-CE
Confidence 999999 999987 89999998764210 0124579999998 69
Q ss_pred EEEEEeCCC--CCCCCCHHHHHHH
Q 025522 227 ISYIHRDKE--AGDDPDIQDILKA 248 (251)
Q Consensus 227 I~~~h~~~~--~~D~~~~~eIL~a 248 (251)
|+|.|.+.+ ..+.|+++++|+|
T Consensus 126 v~~~~~~~~~~~~~~~~~~~~~~~ 149 (149)
T cd03018 126 IRYAWVSDDGEPRDLPDYDEALDA 149 (149)
T ss_pred EEEEEecCCcccccchhHHHHhhC
Confidence 999999999 9999999998874
No 5
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.91 E-value=2e-23 Score=177.95 Aligned_cols=143 Identities=16% Similarity=0.202 Sum_probs=122.2
Q ss_pred cccCCCCCcEEec-CCCC--eEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHH
Q 025522 70 DTKNLLDTVKVYD-VNGN--AIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (251)
Q Consensus 70 ~~g~~ap~f~l~d-~~G~--~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~ 146 (251)
.+|+.+|+|++.+ .+|+ .++++++ +++++||.|||+.|||.|+.|+++|++.+++|++.|++||+|+.++.+.+++
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~-~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~ 81 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDV-KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKA 81 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHH-CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHH
Confidence 4689999999998 5787 6777787 5668888888899999999999999999999999999999999999988888
Q ss_pred HHHHh----CCce-EEEcCChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCccccceEEEEc
Q 025522 147 FSEQT----KFKG-VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAG 221 (251)
Q Consensus 147 f~~~~----~~pf-l~sDp~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid 221 (251)
|++.. +++| +++|++.++.++||+..... +...+++||||
T Consensus 82 ~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~-----------------------------------g~~~p~tfiID 126 (187)
T TIGR03137 82 WHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEA-----------------------------------GLADRGTFVID 126 (187)
T ss_pred HHhhhhhccCcceeEEECCccHHHHHhCCcccCC-----------------------------------CceeeEEEEEC
Confidence 88764 6899 99999999999999864210 12357899999
Q ss_pred CCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025522 222 PGKSNISYIHRDKEAGDDPDIQDILKACC 250 (251)
Q Consensus 222 ~ggg~I~~~h~~~~~~D~~~~~eIL~al~ 250 (251)
++ |+|+|.|+...+.++ ++++||++++
T Consensus 127 ~~-G~I~~~~~~~~~~~~-~~~~ll~~l~ 153 (187)
T TIGR03137 127 PE-GVIQAVEITDNGIGR-DASELLRKIK 153 (187)
T ss_pred CC-CEEEEEEEeCCCCCC-CHHHHHHHHH
Confidence 98 699999998777666 8999999875
No 6
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.91 E-value=2.9e-23 Score=181.07 Aligned_cols=145 Identities=14% Similarity=0.106 Sum_probs=123.0
Q ss_pred ccccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHH
Q 025522 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS 148 (251)
Q Consensus 69 ~~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~ 148 (251)
+.+|+.+|+|++.+.+|+ +.+.+.++++++||+|||+.|||.|..|+++|++++++|+++|++||+||.|+....++|.
T Consensus 7 ~~iG~~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~ 85 (215)
T PRK13191 7 PLIGEKFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWV 85 (215)
T ss_pred ccCCCcCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHH
Confidence 468999999999999996 6676645677889999999999999999999999999999999999999999998877775
Q ss_pred H------HhCCce-EEEcCChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCccccceEEEEc
Q 025522 149 E------QTKFKG-VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAG 221 (251)
Q Consensus 149 ~------~~~~pf-l~sDp~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid 221 (251)
+ ..+++| +++|+++++.++||+..... .+..++++||||
T Consensus 86 ~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~----------------------------------~~~~~r~tfIID 131 (215)
T PRK13191 86 MWIEKNLKVEVPFPIIADPMGNVAKRLGMIHAES----------------------------------STATVRAVFIVD 131 (215)
T ss_pred hhHHHhcCCCCceEEEECCchHHHHHcCCccccc----------------------------------CCceeEEEEEEC
Confidence 4 246889 99999999999999854210 012467999999
Q ss_pred CCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025522 222 PGKSNISYIHRDKEAGDDPDIQDILKACC 250 (251)
Q Consensus 222 ~ggg~I~~~h~~~~~~D~~~~~eIL~al~ 250 (251)
++ |+|++.++....-.+ +++|+|++++
T Consensus 132 ~~-G~Ir~~~~~~~~~gr-~~~eilr~l~ 158 (215)
T PRK13191 132 DK-GTVRLILYYPMEIGR-NIDEILRAIR 158 (215)
T ss_pred CC-CEEEEEEecCCCCCC-CHHHHHHHHH
Confidence 98 699999988766666 9999999875
No 7
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.91 E-value=3.8e-23 Score=173.19 Aligned_cols=146 Identities=12% Similarity=0.132 Sum_probs=122.6
Q ss_pred ccccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEccCC-ChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHH
Q 025522 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFG-CVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (251)
Q Consensus 69 ~~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~-Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f 147 (251)
.+.|+.+|+|++.|.+|+.++++++ +++++ |++|+..| ||+|+.|+++|++.++++ .|++||+|+.|+++.+++|
T Consensus 18 ~~~G~~~P~f~l~~~~g~~v~l~~~-~Gk~v-vl~f~~s~~cp~C~~e~~~l~~~~~~~--~~~~vv~vs~D~~~~~~~f 93 (167)
T PRK00522 18 PQVGDKAPDFTLVANDLSDVSLADF-AGKRK-VLNIFPSIDTGVCATSVRKFNQEAAEL--DNTVVLCISADLPFAQKRF 93 (167)
T ss_pred CCCCCCCCCeEEEcCCCcEEehHHh-CCCEE-EEEEEcCCCCCccHHHHHHHHHHHHHc--CCcEEEEEeCCCHHHHHHH
Confidence 5789999999999999999999998 44444 45555555 999999999999999998 3999999999999889999
Q ss_pred HHHhCCc-e-EEEc-CChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCccccceEEEEcCCC
Q 025522 148 SEQTKFK-G-VYAD-PNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGK 224 (251)
Q Consensus 148 ~~~~~~p-f-l~sD-p~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~gg 224 (251)
+++++++ + +++| +++.+.++||+.... . ...++..+++||||++
T Consensus 94 ~~~~~~~~~~~lsD~~~~~~~~~~gv~~~~------~--------------------------~~~g~~~r~tfvId~~- 140 (167)
T PRK00522 94 CGAEGLENVITLSDFRDHSFGKAYGVAIAE------G--------------------------PLKGLLARAVFVLDEN- 140 (167)
T ss_pred HHhCCCCCceEeecCCccHHHHHhCCeecc------c--------------------------ccCCceeeEEEEECCC-
Confidence 9999998 6 9999 566999999976421 0 0012346789999998
Q ss_pred CeEEEEEeCCCCCCCCCHHHHHHHhhC
Q 025522 225 SNISYIHRDKEAGDDPDIQDILKACCS 251 (251)
Q Consensus 225 g~I~~~h~~~~~~D~~~~~eIL~al~~ 251 (251)
|+|+|.|+..+..+.++++++|+++++
T Consensus 141 G~I~~~~~~~~~~~~~~~~~~l~~l~~ 167 (167)
T PRK00522 141 NKVVYSELVPEITNEPDYDAALAALKA 167 (167)
T ss_pred CeEEEEEECCCcCCCCCHHHHHHHhhC
Confidence 699999999899999999999999874
No 8
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.90 E-value=4.8e-23 Score=177.86 Aligned_cols=144 Identities=15% Similarity=0.166 Sum_probs=121.5
Q ss_pred ccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHH
Q 025522 71 TKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQ 150 (251)
Q Consensus 71 ~g~~ap~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~ 150 (251)
+|+.+|+|++.+.+| .++++++.+++++||+|||+.|||.|..|+++|++++++|++.|++||+|+.++.+..++|.++
T Consensus 1 vG~~aP~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~ 79 (203)
T cd03016 1 LGDTAPNFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIED 79 (203)
T ss_pred CcCCCCCeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhh
Confidence 488999999999988 5899998544678999999999999999999999999999999999999999999888888765
Q ss_pred ------hCCce-EEEcCChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCccccceEEEEcCC
Q 025522 151 ------TKFKG-VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPG 223 (251)
Q Consensus 151 ------~~~pf-l~sDp~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~g 223 (251)
.+++| +++|+++.++++||+..... +.....+++||||++
T Consensus 80 i~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~---------------------------------~~~~~~r~~fiID~~ 126 (203)
T cd03016 80 IEEYTGVEIPFPIIADPDREVAKLLGMIDPDA---------------------------------GSTLTVRAVFIIDPD 126 (203)
T ss_pred HHHhcCCCCceeEEECchHHHHHHcCCccccC---------------------------------CCCceeeEEEEECCC
Confidence 68999 99999999999999864210 001236799999998
Q ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025522 224 KSNISYIHRDKEAGDDPDIQDILKACC 250 (251)
Q Consensus 224 gg~I~~~h~~~~~~D~~~~~eIL~al~ 250 (251)
|+|++.|+......+ +.+++++++.
T Consensus 127 -G~I~~~~~~~~~~gr-~~~ell~~l~ 151 (203)
T cd03016 127 -KKIRLILYYPATTGR-NFDEILRVVD 151 (203)
T ss_pred -CeEEEEEecCCCCCC-CHHHHHHHHH
Confidence 699999987555444 6899988774
No 9
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.90 E-value=6.4e-23 Score=178.93 Aligned_cols=145 Identities=14% Similarity=0.067 Sum_probs=121.8
Q ss_pred cccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHH
Q 025522 70 DTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSE 149 (251)
Q Consensus 70 ~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~ 149 (251)
..|+.+|+|++.+.+|+.+.++++ +++++||+|||+.|||.|..|+.+|++++++|+++|++||+||.++.+..++|.+
T Consensus 3 ~~Gd~aPdF~l~t~~G~~~~~~~~-~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~ 81 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGVKRLPEDY-AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVE 81 (215)
T ss_pred CCCCCCCCCEeECCCCcEecHHHH-CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH
Confidence 689999999999999997777776 5668889999999999999999999999999999999999999999987777765
Q ss_pred ------HhCCce-EEEcCChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCccccceEEEEcC
Q 025522 150 ------QTKFKG-VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGP 222 (251)
Q Consensus 150 ------~~~~pf-l~sDp~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~ 222 (251)
..+++| +++|+++++.++||+..... +....+++||||+
T Consensus 82 ~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~----------------------------------~~~~~R~tfIID~ 127 (215)
T PRK13599 82 WIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGK----------------------------------GTNTVRAVFIVDD 127 (215)
T ss_pred hHHHhcCCCCceeEEECCCchHHHHcCCCccCC----------------------------------CCceeeEEEEECC
Confidence 347899 99999999999999754210 0123679999999
Q ss_pred CCCeEEEEEeCCCCCCCCCHHHHHHHhhC
Q 025522 223 GKSNISYIHRDKEAGDDPDIQDILKACCS 251 (251)
Q Consensus 223 ggg~I~~~h~~~~~~D~~~~~eIL~al~~ 251 (251)
+ |+|++.++.....++ .++|||+++.+
T Consensus 128 d-G~Ir~~~~~p~~~gr-~~~eilr~l~~ 154 (215)
T PRK13599 128 K-GTIRLIMYYPQEVGR-NVDEILRALKA 154 (215)
T ss_pred C-CEEEEEEEcCCCCCC-CHHHHHHHHHH
Confidence 8 699999986554444 88999998753
No 10
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.90 E-value=6.1e-23 Score=183.61 Aligned_cols=147 Identities=12% Similarity=0.163 Sum_probs=125.1
Q ss_pred CCCccccCCCCCcEEec-CCC--CeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHH
Q 025522 66 SVSEDTKNLLDTVKVYD-VNG--NAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (251)
Q Consensus 66 ~~~~~~g~~ap~f~l~d-~~G--~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~ 142 (251)
.+...+|+.+|+|++.+ .+| +.++|+++.+++++||+|||+.|||.|..|+++|++.+++|++.|++||+||.|+++
T Consensus 65 ~~~~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~ 144 (261)
T PTZ00137 65 VTSSLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPF 144 (261)
T ss_pred cccccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHH
Confidence 34568999999999987 455 468999987778999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHH-------hCCce-EEEcCChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCcccc
Q 025522 143 QARTFSEQ-------TKFKG-VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQ 214 (251)
Q Consensus 143 ~~~~f~~~-------~~~pf-l~sDp~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~ 214 (251)
..++|.+. .+++| +++|+++++.++||+.... +..+
T Consensus 145 ~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~------------------------------------g~a~ 188 (261)
T PTZ00137 145 SHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDE------------------------------------GFSH 188 (261)
T ss_pred HHHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcC------------------------------------Ccee
Confidence 88888763 57899 9999999999999975420 1236
Q ss_pred ceEEEEcCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025522 215 GGIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 250 (251)
Q Consensus 215 gg~fVid~ggg~I~~~h~~~~~~D~~~~~eIL~al~ 250 (251)
+++||||++ |+|+|.++.....++ +++|+|++++
T Consensus 189 R~tFIID~d-G~I~~~~~~~~~~gr-~v~eiLr~l~ 222 (261)
T PTZ00137 189 RASVLVDKA-GVVKHVAVYDLGLGR-SVDETLRLFD 222 (261)
T ss_pred cEEEEECCC-CEEEEEEEeCCCCCC-CHHHHHHHHH
Confidence 799999998 699999976555554 8999998874
No 11
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.90 E-value=7.4e-23 Score=176.72 Aligned_cols=143 Identities=13% Similarity=0.145 Sum_probs=120.7
Q ss_pred ccccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHH
Q 025522 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS 148 (251)
Q Consensus 69 ~~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~ 148 (251)
...|+.+|+|++.+.+| .++++++ +++++||+|||+.|||.|..|+++|++++++|++.|++||+||.++.+..++|+
T Consensus 2 ~~vG~~aP~F~~~~~~g-~v~l~d~-~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~ 79 (202)
T PRK13190 2 VKLGQKAPDFTVNTTKG-PIDLSKY-KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWL 79 (202)
T ss_pred CCCCCCCCCcEEecCCC-cEeHHHh-CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH
Confidence 36899999999999888 6999997 566788889999999999999999999999999999999999999987766665
Q ss_pred H----HhC--Cce-EEEcCChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCccccceEEEEc
Q 025522 149 E----QTK--FKG-VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAG 221 (251)
Q Consensus 149 ~----~~~--~pf-l~sDp~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid 221 (251)
+ +.+ ++| +++|++++++++||+.... .+..++++||||
T Consensus 80 ~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~-----------------------------------~g~~~p~~fiId 124 (202)
T PRK13190 80 RDIEERFGIKIPFPVIADIDKELAREYNLIDEN-----------------------------------SGATVRGVFIID 124 (202)
T ss_pred HhHHHhcCCCceEEEEECCChHHHHHcCCcccc-----------------------------------CCcEEeEEEEEC
Confidence 4 444 689 9999999999999985421 012367999999
Q ss_pred CCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025522 222 PGKSNISYIHRDKEAGDDPDIQDILKACC 250 (251)
Q Consensus 222 ~ggg~I~~~h~~~~~~D~~~~~eIL~al~ 250 (251)
++ |+|+|.+.......+ +++|+|+++.
T Consensus 125 ~~-G~I~~~~~~~~~~gr-~~~ellr~l~ 151 (202)
T PRK13190 125 PN-QIVRWMIYYPAETGR-NIDEIIRITK 151 (202)
T ss_pred CC-CEEEEEEEeCCCCCC-CHHHHHHHHH
Confidence 98 699999987666554 8999998875
No 12
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.90 E-value=1e-22 Score=164.80 Aligned_cols=140 Identities=13% Similarity=0.205 Sum_probs=120.4
Q ss_pred cccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHH
Q 025522 70 DTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSE 149 (251)
Q Consensus 70 ~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~ 149 (251)
+.|+.+|+|++.|.+|+.++|+++ +++++||.|++..|||+|+.+++.|+++++++ .|+.+|+|+.++.+.+++|.+
T Consensus 1 ~~G~~aP~f~l~~~~g~~~~l~~~-~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~~~~vi~Is~d~~~~~~~~~~ 77 (143)
T cd03014 1 KVGDKAPDFTLVTSDLSEVSLADF-AGKVKVISVFPSIDTPVCATQTKRFNKEAAKL--DNTVVLTISADLPFAQKRWCG 77 (143)
T ss_pred CCCCCCCCcEEECCCCcEEeHHHh-CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhc--CCCEEEEEECCCHHHHHHHHH
Confidence 368999999999999999999997 55667777776677999999999999999987 499999999999988999999
Q ss_pred HhCC-ce-EEEcCC-hhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCccccceEEEEcCCCCe
Q 025522 150 QTKF-KG-VYADPN-HSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSN 226 (251)
Q Consensus 150 ~~~~-pf-l~sDp~-~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~ggg~ 226 (251)
+.+. .| +++|++ +++.++||+..... +...+++||||++ |+
T Consensus 78 ~~~~~~~~~l~D~~~~~~~~~~gv~~~~~-----------------------------------~~~~~~~~iid~~-G~ 121 (143)
T cd03014 78 AEGVDNVTTLSDFRDHSFGKAYGVLIKDL-----------------------------------GLLARAVFVIDEN-GK 121 (143)
T ss_pred hcCCCCceEeecCcccHHHHHhCCeeccC-----------------------------------CccceEEEEEcCC-Ce
Confidence 9987 68 999996 99999999854210 1235689999998 69
Q ss_pred EEEEEeCCCCCCCCCHHHHHHH
Q 025522 227 ISYIHRDKEAGDDPDIQDILKA 248 (251)
Q Consensus 227 I~~~h~~~~~~D~~~~~eIL~a 248 (251)
|+|.|++....+.|+++++|++
T Consensus 122 I~~~~~~~~~~~~~~~~~~~~~ 143 (143)
T cd03014 122 VIYVELVPEITDEPDYEAALAA 143 (143)
T ss_pred EEEEEECCCcccCCCHHHHhhC
Confidence 9999999999999999999863
No 13
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.90 E-value=1.3e-22 Score=159.29 Aligned_cols=123 Identities=20% Similarity=0.306 Sum_probs=111.8
Q ss_pred ccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHH
Q 025522 71 TKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQ 150 (251)
Q Consensus 71 ~g~~ap~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~ 150 (251)
+|+++|+|++.|.+|+.++|+++ +++++||.||+..|||.|+.++++|+++++++++.|+++|+|+.++.+.+++|.++
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~~l-~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~ 79 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLSDL-KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEE 79 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGGGG-TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHH
T ss_pred CcCCCCCcEeECCCCCEEEHHHH-CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhh
Confidence 58999999999999999999999 66788888888889999999999999999999999999999999999999999999
Q ss_pred hCCce-EEEcCChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCccccceEEEEcCCCCeEEE
Q 025522 151 TKFKG-VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSNISY 229 (251)
Q Consensus 151 ~~~pf-l~sDp~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~ggg~I~~ 229 (251)
.+++| +++|++..+.++||+.... ...+.|++||||++ |+|+|
T Consensus 80 ~~~~~~~~~D~~~~~~~~~~~~~~~-----------------------------------~~~~~p~~~lid~~-g~I~~ 123 (124)
T PF00578_consen 80 YGLPFPVLSDPDGELAKAFGIEDEK-----------------------------------DTLALPAVFLIDPD-GKIRY 123 (124)
T ss_dssp HTCSSEEEEETTSHHHHHTTCEETT-----------------------------------TSEESEEEEEEETT-SBEEE
T ss_pred hccccccccCcchHHHHHcCCcccc-----------------------------------CCceEeEEEEECCC-CEEEe
Confidence 99999 9999999999999987631 01357899999998 69998
Q ss_pred E
Q 025522 230 I 230 (251)
Q Consensus 230 ~ 230 (251)
+
T Consensus 124 ~ 124 (124)
T PF00578_consen 124 A 124 (124)
T ss_dssp E
T ss_pred C
Confidence 5
No 14
>PRK13189 peroxiredoxin; Provisional
Probab=99.90 E-value=1.8e-22 Score=176.80 Aligned_cols=145 Identities=14% Similarity=0.107 Sum_probs=122.8
Q ss_pred ccccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHH
Q 025522 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS 148 (251)
Q Consensus 69 ~~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~ 148 (251)
..+|+.+|+|++.+.+|+ +.+++.++++++||+|||+.|||.|..|+.+|++++++|++.|++||+||.++....++|+
T Consensus 9 ~~vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~ 87 (222)
T PRK13189 9 PLIGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWV 87 (222)
T ss_pred ccCCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHH
Confidence 468999999999999985 7788766677899999999999999999999999999999999999999999998887877
Q ss_pred HH------hCCce-EEEcCChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCccccceEEEEc
Q 025522 149 EQ------TKFKG-VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAG 221 (251)
Q Consensus 149 ~~------~~~pf-l~sDp~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid 221 (251)
+. .+++| +++|+++++.++||+..... ++...+++||||
T Consensus 88 ~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~----------------------------------~~~~~r~tfIID 133 (222)
T PRK13189 88 EWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGK----------------------------------GTNTVRAVFIID 133 (222)
T ss_pred HhHHHhcCcCcceeEEEcCccHHHHHhCCCcccc----------------------------------CCCceeEEEEEC
Confidence 64 35889 99999999999999764210 001367999999
Q ss_pred CCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025522 222 PGKSNISYIHRDKEAGDDPDIQDILKACC 250 (251)
Q Consensus 222 ~ggg~I~~~h~~~~~~D~~~~~eIL~al~ 250 (251)
++ |+|++.++.....++ ..+|+|+++.
T Consensus 134 ~~-G~Ir~~~~~~~~~gr-~~~eilr~l~ 160 (222)
T PRK13189 134 PK-GIIRAILYYPQEVGR-NMDEILRLVK 160 (222)
T ss_pred CC-CeEEEEEecCCCCCC-CHHHHHHHHH
Confidence 98 699999987666555 6889988875
No 15
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.90 E-value=1.1e-22 Score=168.82 Aligned_cols=144 Identities=17% Similarity=0.262 Sum_probs=121.3
Q ss_pred ccCCCCCcEEecCC---CCeEeCCCccCCCcEEEEEEccCCChhhHHH-HHHHHHcHHHHHHcCC-EEEEEeCCCHHHHH
Q 025522 71 TKNLLDTVKVYDVN---GNAIPISDLWKDRKAVVAFARHFGCVLCRKR-ADYLAAKKDVMDASGV-ALVLIGPGSVEQAR 145 (251)
Q Consensus 71 ~g~~ap~f~l~d~~---G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~e-l~~L~~~~~~~~~~gv-~vVaVs~~~~~~~~ 145 (251)
+|+.+|+|++.+.+ |+.++|+++.+++++||+|||+.|||.|..| +++|++.+++|++.|+ .|++||.++.+.++
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~ 80 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMK 80 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHH
Confidence 58999999999985 9999999966778999999999999999999 9999999999999999 69999999999999
Q ss_pred HHHHHhCC--ce-EEEcCChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCccccceEEEEcC
Q 025522 146 TFSEQTKF--KG-VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGP 222 (251)
Q Consensus 146 ~f~~~~~~--pf-l~sDp~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~ 222 (251)
+|++++++ +| +++|+++++.++||+..... + .| .+.+..+++||||
T Consensus 81 ~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~~~~----~-----------~~---------------~~~~~~R~~fiId- 129 (155)
T cd03013 81 AWGKALGAKDKIRFLADGNGEFTKALGLTLDLS----A-----------AG---------------GGIRSKRYALIVD- 129 (155)
T ss_pred HHHHhhCCCCcEEEEECCCHHHHHHcCCCcccc----c-----------cC---------------CcceeeeEEEEEC-
Confidence 99999998 89 99999999999999875321 0 00 0113467899999
Q ss_pred CCCeEEEEEeCCCCCCC--CCHHHHH
Q 025522 223 GKSNISYIHRDKEAGDD--PDIQDIL 246 (251)
Q Consensus 223 ggg~I~~~h~~~~~~D~--~~~~eIL 246 (251)
+ |+|.|.++...+.++ ...+.+|
T Consensus 130 ~-g~I~~~~~~~~~~~~~~~~~~~~~ 154 (155)
T cd03013 130 D-GKVKYLFVEEDPGDVEVSSAENVL 154 (155)
T ss_pred C-CEEEEEEEecCCCCccccCHHHhc
Confidence 5 699999999776433 4444443
No 16
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.89 E-value=2.6e-22 Score=168.44 Aligned_cols=142 Identities=14% Similarity=0.129 Sum_probs=120.8
Q ss_pred ccCCCCCcEEecCCC----CeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHH
Q 025522 71 TKNLLDTVKVYDVNG----NAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (251)
Q Consensus 71 ~g~~ap~f~l~d~~G----~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~ 146 (251)
+|+.+|+|++.+.+| +.++|+++ +++++||.|+++.|||.|..++++|++++++|++.|+.||+|+.++.+..++
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~-~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~ 79 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDY-KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLA 79 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHh-CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHH
Confidence 489999999999887 79999998 5567888888899999999999999999999999999999999999877778
Q ss_pred HHHH-------hCCce-EEEcCChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCccccceEE
Q 025522 147 FSEQ-------TKFKG-VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGII 218 (251)
Q Consensus 147 f~~~-------~~~pf-l~sDp~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~f 218 (251)
|.+. .+++| +++|++.+++++||+..... ++..+.+|
T Consensus 80 ~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~-----------------------------------~~~~p~~~ 124 (173)
T cd03015 80 WRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEE-----------------------------------GVALRGTF 124 (173)
T ss_pred HHHhhhhhCCccCcceeEEECCchhHHHHhCCccccC-----------------------------------CceeeEEE
Confidence 8776 46899 99999999999999865310 12356899
Q ss_pred EEcCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025522 219 VAGPGKSNISYIHRDKEAGDDPDIQDILKACC 250 (251)
Q Consensus 219 Vid~ggg~I~~~h~~~~~~D~~~~~eIL~al~ 250 (251)
|||++ |+|+|.|++..+.+ .+.++||++++
T Consensus 125 lID~~-G~I~~~~~~~~~~~-~~~~~il~~l~ 154 (173)
T cd03015 125 IIDPE-GIIRHITVNDLPVG-RSVDETLRVLD 154 (173)
T ss_pred EECCC-CeEEEEEecCCCCC-CCHHHHHHHHH
Confidence 99998 69999999876654 47889998875
No 17
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.89 E-value=2.8e-22 Score=171.47 Aligned_cols=143 Identities=15% Similarity=0.139 Sum_probs=121.1
Q ss_pred cccCCCCCcEEec---CCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHH
Q 025522 70 DTKNLLDTVKVYD---VNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (251)
Q Consensus 70 ~~g~~ap~f~l~d---~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~ 146 (251)
.+|.++|+|++.. -+...++|+++ +++++||.||++.|||.|..|+++|++.+++|++.|++||+||.|+.+..++
T Consensus 3 ~~~~~~p~f~~~~~~~g~~~~v~L~d~-~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a 81 (187)
T PRK10382 3 LINTKIKPFKNQAFKNGEFIEVTEKDT-EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKA 81 (187)
T ss_pred ccCCcCCCcEEEEEeCCcceEEEHHHh-CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHH
Confidence 5789999999876 34456777887 4568999999999999999999999999999999999999999999999999
Q ss_pred HHHHh----CCce-EEEcCChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCccccceEEEEc
Q 025522 147 FSEQT----KFKG-VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAG 221 (251)
Q Consensus 147 f~~~~----~~pf-l~sDp~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid 221 (251)
|++.. +++| +++|+++++.++||+.... .++..+++||||
T Consensus 82 ~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~-----------------------------------~g~~~r~tfIID 126 (187)
T PRK10382 82 WHSSSETIAKIKYAMIGDPTGALTRNFDNMRED-----------------------------------EGLADRATFVVD 126 (187)
T ss_pred HHHhhccccCCceeEEEcCchHHHHHcCCCccc-----------------------------------CCceeeEEEEEC
Confidence 99763 8999 9999999999999985421 012347899999
Q ss_pred CCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025522 222 PGKSNISYIHRDKEAGDDPDIQDILKACC 250 (251)
Q Consensus 222 ~ggg~I~~~h~~~~~~D~~~~~eIL~al~ 250 (251)
++ |+|+|.|+.....++ +++|+|++++
T Consensus 127 ~~-G~I~~~~~~~~~~~~-~~~eil~~l~ 153 (187)
T PRK10382 127 PQ-GIIQAIEVTAEGIGR-DASDLLRKIK 153 (187)
T ss_pred CC-CEEEEEEEeCCCCCC-CHHHHHHHHH
Confidence 98 699999998655554 8999999875
No 18
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.89 E-value=5.9e-22 Score=162.60 Aligned_cols=152 Identities=14% Similarity=0.176 Sum_probs=125.8
Q ss_pred CCCccccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHH
Q 025522 66 SVSEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQAR 145 (251)
Q Consensus 66 ~~~~~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~ 145 (251)
|+..+.|+.+|+|++.|.+|+.++++++ +++++||.|++..|||.|+.+++.|++.++++++.|+++|+|+.++.+.++
T Consensus 1 ~~~~~~g~~~p~f~l~~~~G~~~~l~~~-~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~ 79 (154)
T PRK09437 1 MNPLKAGDIAPKFSLPDQDGEQVSLTDF-QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLS 79 (154)
T ss_pred CCcCCCCCcCCCcEeeCCCCCEEeHHHh-CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHH
Confidence 4567889999999999999999999997 556666666666799999999999999999999999999999999999999
Q ss_pred HHHHHhCCce-EEEcCChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCccccceEEEEcCCC
Q 025522 146 TFSEQTKFKG-VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGK 224 (251)
Q Consensus 146 ~f~~~~~~pf-l~sDp~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~gg 224 (251)
+|+++++++| +++|++..++++||+..... . .+ .... ...+.+||||++
T Consensus 80 ~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~-----~----------~~------~~~~--------~~~~~~~lid~~- 129 (154)
T PRK09437 80 RFAEKELLNFTLLSDEDHQVAEQFGVWGEKK-----F----------MG------KTYD--------GIHRISFLIDAD- 129 (154)
T ss_pred HHHHHhCCCCeEEECCCchHHHHhCCCcccc-----c----------cc------cccc--------CcceEEEEECCC-
Confidence 9999999999 99999999999999854210 0 00 0000 123578999998
Q ss_pred CeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025522 225 SNISYIHRDKEAGDDPDIQDILKACC 250 (251)
Q Consensus 225 g~I~~~h~~~~~~D~~~~~eIL~al~ 250 (251)
|+|++.|.+..+.++ .+++|++++
T Consensus 130 G~i~~~~~g~~~~~~--~~~~~~~~~ 153 (154)
T PRK09437 130 GKIEHVFDKFKTSNH--HDVVLDYLK 153 (154)
T ss_pred CEEEEEEcCCCcchh--HHHHHHHHh
Confidence 699999998766654 789999886
No 19
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.89 E-value=4.8e-22 Score=161.24 Aligned_cols=142 Identities=20% Similarity=0.317 Sum_probs=117.1
Q ss_pred cccCCCCCcEEec--CCCCeEeCCCccCCCcEEEEEEccC-CChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHH
Q 025522 70 DTKNLLDTVKVYD--VNGNAIPISDLWKDRKAVVAFARHF-GCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (251)
Q Consensus 70 ~~g~~ap~f~l~d--~~G~~v~ls~l~~~~~vVLvF~R~~-~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~ 146 (251)
++|+.+|+|++.+ .+|+.++++++ + ++++|++||+. |||+|+.+++.|.++++++.+.|+.+|+|+.++...+++
T Consensus 1 k~G~~~P~~~~~~~~~~g~~~~l~~~-~-gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~ 78 (146)
T PF08534_consen 1 KVGDKAPDFSLKDLDLDGKPVSLSDF-K-GKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVRE 78 (146)
T ss_dssp STTSB--CCEEEEEETTSEEEEGGGG-T-TSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHH
T ss_pred CCCCCCCCeEEEeecCCCCEecHHHh-C-CCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHH
Confidence 5799999999966 99999999996 4 45566666677 999999999999999999999999999999998877999
Q ss_pred HHHHhCCce-EEEcCChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCccccceEEEEcCCCC
Q 025522 147 FSEQTKFKG-VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKS 225 (251)
Q Consensus 147 f~~~~~~pf-l~sDp~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~ggg 225 (251)
|+++++++| ++.|++..+.++||+..... . +.++..|..||||++ |
T Consensus 79 ~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-----~---------------------------~~~~~~P~~~lId~~-G 125 (146)
T PF08534_consen 79 FLKKYGINFPVLSDPDGALAKALGVTIMED-----P---------------------------GNGFGIPTTFLIDKD-G 125 (146)
T ss_dssp HHHHTTTTSEEEEETTSHHHHHTTCEEECC-----T---------------------------TTTSSSSEEEEEETT-S
T ss_pred HHHhhCCCceEEechHHHHHHHhCCccccc-----c---------------------------ccCCeecEEEEEECC-C
Confidence 999999999 99999999999999764311 0 011357789999998 6
Q ss_pred eEEEEEeCCCCCCCCCHHHHH
Q 025522 226 NISYIHRDKEAGDDPDIQDIL 246 (251)
Q Consensus 226 ~I~~~h~~~~~~D~~~~~eIL 246 (251)
+|+|.|.+....+.++++++|
T Consensus 126 ~V~~~~~g~~~~~~~~~~~~l 146 (146)
T PF08534_consen 126 KVVYRHVGPDPDEESDLEAVL 146 (146)
T ss_dssp BEEEEEESSBTTSHHSHHHHH
T ss_pred EEEEEEeCCCCCCCCChhhcC
Confidence 999999998883366676665
No 20
>PRK15000 peroxidase; Provisional
Probab=99.88 E-value=6.9e-22 Score=170.57 Aligned_cols=144 Identities=12% Similarity=0.057 Sum_probs=118.9
Q ss_pred cccCCCCCcEEecCC--CCe---EeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHH
Q 025522 70 DTKNLLDTVKVYDVN--GNA---IPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQA 144 (251)
Q Consensus 70 ~~g~~ap~f~l~d~~--G~~---v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~ 144 (251)
.+|+.+|+|++.+.. |+. ++++++++++++||.||++.|||.|..|+++|++++++|++.|++||+||.|+.+..
T Consensus 3 ~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~ 82 (200)
T PRK15000 3 LVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVH 82 (200)
T ss_pred cCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
Confidence 478999999999864 454 455555567788999998899999999999999999999999999999999999877
Q ss_pred HHHHHH----hC---Cce-EEEcCChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCccccce
Q 025522 145 RTFSEQ----TK---FKG-VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGG 216 (251)
Q Consensus 145 ~~f~~~----~~---~pf-l~sDp~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg 216 (251)
++|.+. .+ ++| +++|+++++.++||+.... .+..+++
T Consensus 83 ~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~-----------------------------------~g~~~r~ 127 (200)
T PRK15000 83 NAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPD-----------------------------------EGVALRG 127 (200)
T ss_pred HHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCC-----------------------------------CCcEEeE
Confidence 777543 33 689 9999999999999975421 0124689
Q ss_pred EEEEcCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025522 217 IIVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 250 (251)
Q Consensus 217 ~fVid~ggg~I~~~h~~~~~~D~~~~~eIL~al~ 250 (251)
+||||++ |+|++.+.+...-++ +++|+|++++
T Consensus 128 tfiID~~-G~I~~~~~~~~~~gr-~~~eilr~l~ 159 (200)
T PRK15000 128 SFLIDAN-GIVRHQVVNDLPLGR-NIDEMLRMVD 159 (200)
T ss_pred EEEECCC-CEEEEEEecCCCCCC-CHHHHHHHHH
Confidence 9999998 699999998766665 8999999875
No 21
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.88 E-value=1.1e-21 Score=157.17 Aligned_cols=137 Identities=13% Similarity=0.227 Sum_probs=119.6
Q ss_pred CCCCcEEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHh-C
Q 025522 74 LLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQT-K 152 (251)
Q Consensus 74 ~ap~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~-~ 152 (251)
.+|+|++.|.+|+.++++++ +++++||+|++..||+.|..++++|+++++++++.|+.+|+|+.++.+.+++|++++ +
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~-~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~ 79 (140)
T cd02971 1 KAPDFTLPATDGGEVSLSDF-KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGG 79 (140)
T ss_pred CCCCceeccCCCcEEehHHh-CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccC
Confidence 47999999999999999998 567788888889999999999999999999999999999999999999999999999 9
Q ss_pred Cce-EEEcCChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCccccceEEEEcCCCCeEEEEE
Q 025522 153 FKG-VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSNISYIH 231 (251)
Q Consensus 153 ~pf-l~sDp~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~ggg~I~~~h 231 (251)
.+| +++|++..+++.||+..... .++....+.+||+|++ |+|+|.|
T Consensus 80 ~~~~~l~D~~~~~~~~~g~~~~~~--------------------------------~~~~~~~p~~~lid~~-g~i~~~~ 126 (140)
T cd02971 80 LNFPLLSDPDGEFAKAYGVLIEKS--------------------------------AGGGLAARATFIIDPD-GKIRYVE 126 (140)
T ss_pred CCceEEECCChHHHHHcCCccccc--------------------------------cccCceeEEEEEECCC-CcEEEEE
Confidence 999 99999999999999876321 0112346789999998 6999999
Q ss_pred eCCCCCCCCCHHHH
Q 025522 232 RDKEAGDDPDIQDI 245 (251)
Q Consensus 232 ~~~~~~D~~~~~eI 245 (251)
.+.++ ++...+.+
T Consensus 127 ~~~~~-~~~~~~~~ 139 (140)
T cd02971 127 VEPLP-TGRNAEEL 139 (140)
T ss_pred ecCCC-CCcChHhh
Confidence 99988 67766655
No 22
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.88 E-value=1.8e-21 Score=156.22 Aligned_cols=138 Identities=18% Similarity=0.245 Sum_probs=116.1
Q ss_pred CCCCCcEEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhC
Q 025522 73 NLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTK 152 (251)
Q Consensus 73 ~~ap~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~ 152 (251)
+.+|+|++.|.+|+.++++++ +++++||.|++..|||.|..++++|++.++++++.|+++|+|+.++.+.+++|+++++
T Consensus 1 ~~~p~f~l~~~~g~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 79 (140)
T cd03017 1 DKAPDFTLPDQDGETVSLSDL-RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYG 79 (140)
T ss_pred CCCCCccccCCCCCEEeHHHh-CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhC
Confidence 478999999999999999998 4667777777789999999999999999999999999999999999999999999999
Q ss_pred Cce-EEEcCChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCccccceEEEEcCCCCeEEEEE
Q 025522 153 FKG-VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSNISYIH 231 (251)
Q Consensus 153 ~pf-l~sDp~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~ggg~I~~~h 231 (251)
++| +++|++++++++||+..... .+.....+.+||+|++ |+|++.|
T Consensus 80 ~~~~~l~D~~~~~~~~~gv~~~~~--------------------------------~~~~~~~p~~~lid~~-G~v~~~~ 126 (140)
T cd03017 80 LPFPLLSDPDGKLAKAYGVWGEKK--------------------------------KKYMGIERSTFLIDPD-GKIVKVW 126 (140)
T ss_pred CCceEEECCccHHHHHhCCccccc--------------------------------cccCCcceeEEEECCC-CEEEEEE
Confidence 999 99999999999999875310 0011235689999998 6999999
Q ss_pred eCCCCCCCCCHHHHH
Q 025522 232 RDKEAGDDPDIQDIL 246 (251)
Q Consensus 232 ~~~~~~D~~~~~eIL 246 (251)
.+.. ..-+++++|
T Consensus 127 ~g~~--~~~~~~~~~ 139 (140)
T cd03017 127 RKVK--PKGHAEEVL 139 (140)
T ss_pred ecCC--ccchHHHHh
Confidence 8755 344455655
No 23
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.85 E-value=2e-20 Score=160.91 Aligned_cols=146 Identities=11% Similarity=0.088 Sum_probs=120.3
Q ss_pred CCccccCCCCCcEEec----CCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHH
Q 025522 67 VSEDTKNLLDTVKVYD----VNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (251)
Q Consensus 67 ~~~~~g~~ap~f~l~d----~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~ 142 (251)
.....|+.+|+|++.+ .+|+.++|+++ +++++||+|+++.||+.|..++.+|++.+++|++.|++||+|+.++.+
T Consensus 4 ~~~~~G~~aPdF~~~~~~~~~~~~~v~l~d~-~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~ 82 (199)
T PTZ00253 4 GDAKINHPAPSFEEVALMPNGSFKKISLSSY-KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEY 82 (199)
T ss_pred cccccCCcCCCCEeeccccCCCCcEEeHHHH-CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHH
Confidence 3457899999999664 56789999997 567889988889999999999999999999999999999999999987
Q ss_pred HHHHHHHH-------hCCce-EEEcCChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCcccc
Q 025522 143 QARTFSEQ-------TKFKG-VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQ 214 (251)
Q Consensus 143 ~~~~f~~~-------~~~pf-l~sDp~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~ 214 (251)
...+|..+ .+++| +++|+++++.++||+.... ++...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~-----------------------------------~g~~~ 127 (199)
T PTZ00253 83 AHLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEE-----------------------------------QGVAY 127 (199)
T ss_pred HHHHHHhChHhhCCccccccceEECcHhHHHHHcCCcccC-----------------------------------CCceE
Confidence 66666432 14789 9999999999999985321 01235
Q ss_pred ceEEEEcCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025522 215 GGIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 250 (251)
Q Consensus 215 gg~fVid~ggg~I~~~h~~~~~~D~~~~~eIL~al~ 250 (251)
+++||||++ |+|++.+++... ...+++|+|+++.
T Consensus 128 r~~fiID~~-G~i~~~~~~~~~-~~r~~~e~l~~l~ 161 (199)
T PTZ00253 128 RGLFIIDPK-GMLRQITVNDMP-VGRNVEEVLRLLE 161 (199)
T ss_pred EEEEEECCC-CEEEEEEecCCC-CCCCHHHHHHHHH
Confidence 799999998 699999998655 4558899998875
No 24
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=99.83 E-value=6.7e-20 Score=144.08 Aligned_cols=114 Identities=32% Similarity=0.527 Sum_probs=88.7
Q ss_pred HHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce-EEEcCChhHHHHcCCccccccccCchhhHHHHHHHhhhhhh
Q 025522 118 YLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG-VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQ 196 (251)
Q Consensus 118 ~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf-l~sDp~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~ 196 (251)
+|.+.+++|+++|+++|+|++++.+.+++|++..++|+ ||+||++++|++||+.......+.+..+...+.... +.
T Consensus 1 ~L~~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~~~p~~ly~D~~~~lY~~lg~~~~~~~~~~~~~~~~~~~~~~---~~ 77 (115)
T PF13911_consen 1 QLSRRKPELEAAGVKLVVIGCGSPEGIEKFCELTGFPFPLYVDPERKLYKALGLKRGLKWSLLPPALWSGLSNIV---QS 77 (115)
T ss_pred ChhHhHHHHHHcCCeEEEEEcCCHHHHHHHHhccCCCCcEEEeCcHHHHHHhCCccccccCCCchHHHHHHHHHH---HH
Confidence 36788999999999999999999988999999999999 999999999999999997665555544333322222 22
Q ss_pred hcccccccCcCCCCccccceEEEEcCCCCeEEEEEeCCC
Q 025522 197 DWKLSFERDTVSRGGWQQGGIIVAGPGKSNISYIHRDKE 235 (251)
Q Consensus 197 ~~k~~~~g~~~~g~~~q~gg~fVid~ggg~I~~~h~~~~ 235 (251)
.++.++.++...++.+|+||+||+|++ |+|+|+|++++
T Consensus 78 ~~~~~~~~~~~~g~~~q~GG~fv~d~~-g~v~~~hr~~~ 115 (115)
T PF13911_consen 78 AKNGGIPGNKDQGDGWQLGGTFVFDPG-GKVLYEHRDRH 115 (115)
T ss_pred HHHcCCCCcccCCCceecCeEEEEcCC-CeEEEEEecCC
Confidence 222234443225677999999999998 69999999975
No 25
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.5e-19 Score=149.85 Aligned_cols=176 Identities=15% Similarity=0.196 Sum_probs=139.3
Q ss_pred eccCCCCCCCccccCCcccccCCCCccee-ecccCCCCCCCCccccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEcc
Q 025522 28 ILPNQSPLWRPRHWNKTLKLSPRRPSHVI-ASAVSESPPSVSEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARH 106 (251)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~ 106 (251)
..|.-+..-|||.+-++ |++ -|+.|. .....+.|+.+|||+|.|.||.+|+|.++.+.+++|++||++
T Consensus 32 ~vpkK~~ks~~~~~~~~---------~~~~~s~~Ss--ds~~v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~ 100 (211)
T KOG0855|consen 32 SVPKKSSKSNFFGSTLT---------HSSYISPVSS--DSLKVNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPA 100 (211)
T ss_pred cccccccccCccccccc---------ceeeeccccc--cceeeecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEecc
Confidence 34555666667755543 222 344332 223678999999999999999999999998888999999999
Q ss_pred CCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce-EEEcCChhHHHHcCCccccccccCchhhHH
Q 025522 107 FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG-VYADPNHSSYEALSFVSGVLVTFTPKAGLK 185 (251)
Q Consensus 107 ~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf-l~sDp~~~ly~alGl~~~~~~~~~P~~~~~ 185 (251)
.-.|-|.++++.+++.|++|++.|++|+++|-|+....++|..++++|| +++||.+++.+.||......
T Consensus 101 asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~sqKaF~sKqnlPYhLLSDpk~e~ik~lGa~k~p~---------- 170 (211)
T KOG0855|consen 101 ASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSASQKAFASKQNLPYHLLSDPKNEVIKDLGAPKDPF---------- 170 (211)
T ss_pred CCCCCcccccccccccHHHHhhcCceEEeeccCchHHHHHhhhhccCCeeeecCcchhHHHHhCCCCCCC----------
Confidence 9999999999999999999999999999999999999999999999999 99999999999999876431
Q ss_pred HHHHHhhhhhhhcccccccCcCCCCccccceEEEEcCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025522 186 IIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 250 (251)
Q Consensus 186 ~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~ggg~I~~~h~~~~~~D~~~~~eIL~al~ 250 (251)
+++..+..||++.||++..+... ...-...++|.++.+.
T Consensus 171 ------------------------gg~~~Rsh~if~kg~~k~~ik~~--~isPevsvd~a~k~~~ 209 (211)
T KOG0855|consen 171 ------------------------GGLPGRSHYIFDKGGVKQLIKNN--QISPEVSVDEALKFLK 209 (211)
T ss_pred ------------------------CCcccceEEEEecCCeEEEEEec--ccCccccHHHHHHHHh
Confidence 12334578999987544444443 4555566777777653
No 26
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.81 E-value=4.2e-19 Score=148.34 Aligned_cols=136 Identities=18% Similarity=0.200 Sum_probs=114.3
Q ss_pred cCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCC--------HHH
Q 025522 72 KNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS--------VEQ 143 (251)
Q Consensus 72 g~~ap~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~--------~~~ 143 (251)
|+.+|+|++.|.+|+.++++++. +++++|++|+++|||.|..++++|.++++++++.++++|+|+.++ .+.
T Consensus 1 g~~~p~f~l~~~~g~~v~l~~~~-~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~ 79 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLADFA-DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPEN 79 (171)
T ss_pred CCcCCCccccCCCCCEEeHHHHh-CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHH
Confidence 67899999999999999999974 456788888899999999999999999999999999999999864 689
Q ss_pred HHHHHHHhCCce-EEEcCChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCccccceEEEEcC
Q 025522 144 ARTFSEQTKFKG-VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGP 222 (251)
Q Consensus 144 ~~~f~~~~~~pf-l~sDp~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~ 222 (251)
+++|+++.+++| +++|+++.+.+.||+.. .|..||+|+
T Consensus 80 ~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~-----------------------------------------~P~~~lid~ 118 (171)
T cd02969 80 MKAKAKEHGYPFPYLLDETQEVAKAYGAAC-----------------------------------------TPDFFLFDP 118 (171)
T ss_pred HHHHHHHCCCCceEEECCchHHHHHcCCCc-----------------------------------------CCcEEEECC
Confidence 999999999999 99999998888887632 135899999
Q ss_pred CCCeEEEEEeCCCC----CCCCCHHHHHHHhh
Q 025522 223 GKSNISYIHRDKEA----GDDPDIQDILKACC 250 (251)
Q Consensus 223 ggg~I~~~h~~~~~----~D~~~~~eIL~al~ 250 (251)
+ |+|+|.+..... ..++..+++.++++
T Consensus 119 ~-G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~ 149 (171)
T cd02969 119 D-GKLVYRGRIDDSRPGNDPPVTGRDLRAALD 149 (171)
T ss_pred C-CeEEEeecccCCcccccccccHHHHHHHHH
Confidence 8 699988754332 34667777777664
No 27
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.80 E-value=1.4e-18 Score=148.43 Aligned_cols=144 Identities=13% Similarity=0.170 Sum_probs=108.3
Q ss_pred ccCCCCCCCCccccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeC
Q 025522 59 AVSESPPSVSEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP 138 (251)
Q Consensus 59 ~~~~~~~~~~~~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~ 138 (251)
|+.........++|+.+|+|++.|.+|+.+++++...+++.+|++|++.|||+|+++++.+++.+. +.|+++++|+.
T Consensus 36 ~~~~~~~~~~~~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~---~~~~~vv~Is~ 112 (189)
T TIGR02661 36 PMGAMITDHGPDVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIAR---AEETDVVMISD 112 (189)
T ss_pred cccccccccCCCCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHH---hcCCcEEEEeC
Confidence 433333334568999999999999999999997432245567777789999999999999998764 35899999999
Q ss_pred CCHHHHHHHHHHhCCce-EEEcCChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCccccceE
Q 025522 139 GSVEQARTFSEQTKFKG-VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGI 217 (251)
Q Consensus 139 ~~~~~~~~f~~~~~~pf-l~sDp~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~ 217 (251)
++.+.+++|+++++++| .|. .+.++.++||+. ..|..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~y~v~-----------------------------------------~~P~~ 150 (189)
T TIGR02661 113 GTPAEHRRFLKDHELGGERYV-VSAEIGMAFQVG-----------------------------------------KIPYG 150 (189)
T ss_pred CCHHHHHHHHHhcCCCcceee-chhHHHHhccCC-----------------------------------------ccceE
Confidence 99999999999999998 664 445555554431 14568
Q ss_pred EEEcCCCCeEEEEEeCCCCCCCCCHHHHHHHhhC
Q 025522 218 IVAGPGKSNISYIHRDKEAGDDPDIQDILKACCS 251 (251)
Q Consensus 218 fVid~ggg~I~~~h~~~~~~D~~~~~eIL~al~~ 251 (251)
|++|++ |+|++.+. ..-+..++++|+++++
T Consensus 151 ~lID~~-G~I~~~g~---~~~~~~le~ll~~l~~ 180 (189)
T TIGR02661 151 VLLDQD-GKIRAKGL---TNTREHLESLLEADRE 180 (189)
T ss_pred EEECCC-CeEEEccC---CCCHHHHHHHHHHHHc
Confidence 999998 69998642 2233458899988764
No 28
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.5e-18 Score=147.64 Aligned_cols=144 Identities=17% Similarity=0.200 Sum_probs=123.6
Q ss_pred ccccCCCCCcEEecC-CCC---eEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHH
Q 025522 69 EDTKNLLDTVKVYDV-NGN---AIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQA 144 (251)
Q Consensus 69 ~~~g~~ap~f~l~d~-~G~---~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~ 144 (251)
.-+|+.+|+|++... .|+ .|+++++.+ +++||+|++..+.+.|-.|+.+++++|++|+++|++||+||.|+...+
T Consensus 3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~g-kw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH 81 (194)
T COG0450 3 SLIGKKAPDFTANAVLGGEIFEEITLSDYYG-KWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSH 81 (194)
T ss_pred cccCCcCCCcEEEEEecCceeeEEechhhcC-cEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHH
Confidence 357999999999887 775 999999876 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH----hC---Cce-EEEcCChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCccccce
Q 025522 145 RTFSEQ----TK---FKG-VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGG 216 (251)
Q Consensus 145 ~~f~~~----~~---~pf-l~sDp~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg 216 (251)
.+|.+. .+ ++| +++|+++++.++||+..... +..++|
T Consensus 82 ~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~-----------------------------------g~a~R~ 126 (194)
T COG0450 82 KAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEE-----------------------------------GLALRG 126 (194)
T ss_pred HHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCC-----------------------------------CcceeE
Confidence 999877 44 789 99999999999999876311 124679
Q ss_pred EEEEcCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025522 217 IIVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 250 (251)
Q Consensus 217 ~fVid~ggg~I~~~h~~~~~~D~~~~~eIL~al~ 250 (251)
+|||||+ |+|++..+....-.| .++|+|+.+.
T Consensus 127 ~FIIDp~-g~ir~~~v~~~~iGR-n~dEilR~id 158 (194)
T COG0450 127 TFIIDPD-GVIRHILVNPLTIGR-NVDEILRVID 158 (194)
T ss_pred EEEECCC-CeEEEEEEecCCCCc-CHHHHHHHHH
Confidence 9999999 699999998666433 5667776653
No 29
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.79 E-value=1.2e-18 Score=150.24 Aligned_cols=89 Identities=18% Similarity=0.357 Sum_probs=81.6
Q ss_pred cccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeC--------CCH
Q 025522 70 DTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--------GSV 141 (251)
Q Consensus 70 ~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~--------~~~ 141 (251)
+.+..+|+|++.|.+|+.++++++ ++++||++||++|||+|+.|+++|+++++++++.|+.||+|++ ++.
T Consensus 14 ~~~~~~pdf~l~d~~G~~vsL~~~--kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~ 91 (199)
T PTZ00056 14 ELRKSIYDYTVKTLEGTTVPMSSL--KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNT 91 (199)
T ss_pred hcCCCCCceEEECCCCCEEeHHHh--CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCH
Confidence 456789999999999999999998 4678999999999999999999999999999999999999986 567
Q ss_pred HHHHHHHHHhCCce-EEEcC
Q 025522 142 EQARTFSEQTKFKG-VYADP 160 (251)
Q Consensus 142 ~~~~~f~~~~~~pf-l~sDp 160 (251)
+.+++|+++++++| +++|.
T Consensus 92 e~~~~f~~~~~~~fpvl~d~ 111 (199)
T PTZ00056 92 KDIRKFNDKNKIKYNFFEPI 111 (199)
T ss_pred HHHHHHHHHcCCCceeeeee
Confidence 89999999999999 99873
No 30
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.78 E-value=8.1e-19 Score=144.34 Aligned_cols=83 Identities=18% Similarity=0.251 Sum_probs=75.5
Q ss_pred CCCcEEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeC--------CCHHHHHH
Q 025522 75 LDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--------GSVEQART 146 (251)
Q Consensus 75 ap~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~--------~~~~~~~~ 146 (251)
+|+|++.|.+|+.++++++ .+++||++||++||| |+.|+++|+++++++++.|+.+|+|+. ++.+.+++
T Consensus 2 ~~~f~l~d~~G~~v~l~~~--~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~ 78 (152)
T cd00340 2 IYDFSVKDIDGEPVSLSKY--KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKE 78 (152)
T ss_pred cceeEEECCCCCEEeHHHh--CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHH
Confidence 7899999999999999998 467888999999999 999999999999999999999999986 34688999
Q ss_pred HHHH-hCCce-EEEcC
Q 025522 147 FSEQ-TKFKG-VYADP 160 (251)
Q Consensus 147 f~~~-~~~pf-l~sDp 160 (251)
|+++ ++++| +++|+
T Consensus 79 f~~~~~~~~fp~~~d~ 94 (152)
T cd00340 79 FCETNYGVTFPMFAKI 94 (152)
T ss_pred HHHHhcCCCceeeeeE
Confidence 9987 79999 99875
No 31
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.78 E-value=3.6e-18 Score=150.93 Aligned_cols=89 Identities=16% Similarity=0.260 Sum_probs=80.0
Q ss_pred cccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeC--------CCH
Q 025522 70 DTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--------GSV 141 (251)
Q Consensus 70 ~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~--------~~~ 141 (251)
.+|+.+|+|++.|.+|+.++++++ ++++||++||+.||++|+.|+++|+++++++++.|++||+|++ ++.
T Consensus 74 ~~g~~aPdF~l~d~~G~~vsLsd~--kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~ 151 (236)
T PLN02399 74 ATEKSVHDFTVKDIDGKDVALSKF--KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN 151 (236)
T ss_pred hcCCCCCceEEECCCCCEEeHHHh--CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCH
Confidence 578999999999999999999998 4578888889999999999999999999999999999999996 456
Q ss_pred HHHHHHH-HHhCCce-EEEcC
Q 025522 142 EQARTFS-EQTKFKG-VYADP 160 (251)
Q Consensus 142 ~~~~~f~-~~~~~pf-l~sDp 160 (251)
+.+++|+ ++++++| ++.|.
T Consensus 152 ~ei~~f~~~~~g~~fPvl~~~ 172 (236)
T PLN02399 152 PEIKQFACTRFKAEFPIFDKV 172 (236)
T ss_pred HHHHHHHHHhcCCCCcccccc
Confidence 7899998 6889999 88653
No 32
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.78 E-value=6.4e-18 Score=140.33 Aligned_cols=138 Identities=14% Similarity=0.174 Sum_probs=113.4
Q ss_pred CCccccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCH-HHHH
Q 025522 67 VSEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQAR 145 (251)
Q Consensus 67 ~~~~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~-~~~~ 145 (251)
.....|+.+|+|++.+.+|+.++++++ + ++.++++|++.||+.|+.+++.|.+.++++.+.++++|+|+.++. +..+
T Consensus 33 ~~~~~g~~~p~~~~~~~~g~~~~l~~~-~-~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~ 110 (173)
T PRK03147 33 EKVQVGKEAPNFVLTDLEGKKIELKDL-K-GKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVK 110 (173)
T ss_pred cccCCCCCCCCcEeecCCCCEEeHHHc-C-CCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHH
Confidence 456789999999999999999999997 3 455666677999999999999999999999999999999999755 7889
Q ss_pred HHHHHhCCce-EEEcCChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCccccceEEEEcCCC
Q 025522 146 TFSEQTKFKG-VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGK 224 (251)
Q Consensus 146 ~f~~~~~~pf-l~sDp~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~gg 224 (251)
+|.++.+++| ++.|++..+.+.||+.. .|..|++|++
T Consensus 111 ~~~~~~~~~~~~~~d~~~~~~~~~~v~~-----------------------------------------~P~~~lid~~- 148 (173)
T PRK03147 111 NFVNRYGLTFPVAIDKGRQVIDAYGVGP-----------------------------------------LPTTFLIDKD- 148 (173)
T ss_pred HHHHHhCCCceEEECCcchHHHHcCCCC-----------------------------------------cCeEEEECCC-
Confidence 9999999999 99999998888887531 3468999998
Q ss_pred CeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025522 225 SNISYIHRDKEAGDDPDIQDILKACC 250 (251)
Q Consensus 225 g~I~~~h~~~~~~D~~~~~eIL~al~ 250 (251)
|+|++.+.+.... -++.+.|+.++
T Consensus 149 g~i~~~~~g~~~~--~~l~~~l~~~~ 172 (173)
T PRK03147 149 GKVVKVITGEMTE--EQLEEYLEKIK 172 (173)
T ss_pred CcEEEEEeCCCCH--HHHHHHHHHhc
Confidence 6999888764422 22445555543
No 33
>PLN02412 probable glutathione peroxidase
Probab=99.78 E-value=3.3e-18 Score=143.37 Aligned_cols=134 Identities=11% Similarity=0.097 Sum_probs=98.8
Q ss_pred cccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCC--------CH
Q 025522 70 DTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG--------SV 141 (251)
Q Consensus 70 ~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~--------~~ 141 (251)
+..+.+|+|++.|.+|+.++++++ .+++||++||++|||+|++++++|+++++++++.|+.||+|+.+ +.
T Consensus 4 ~~~~~~pdf~l~d~~G~~v~l~~~--~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~ 81 (167)
T PLN02412 4 ESPKSIYDFTVKDIGGNDVSLNQY--KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSN 81 (167)
T ss_pred ccCCCCCceEEECCCCCEEeHHHh--CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCH
Confidence 344789999999999999999998 45788888889999999999999999999999999999999963 44
Q ss_pred HHHH-HHHHHhCCce-EEEc--CCh-hHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCccccce
Q 025522 142 EQAR-TFSEQTKFKG-VYAD--PNH-SSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGG 216 (251)
Q Consensus 142 ~~~~-~f~~~~~~pf-l~sD--p~~-~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg 216 (251)
+.+. .|+++++++| +++| ++. .....|+....- +.+..+ .+....+.
T Consensus 82 ~~~~~~~~~~~~~~fpvl~~~d~~g~~~~~~~~~~~~~------------------------~~~~~~----~~v~~~p~ 133 (167)
T PLN02412 82 EEIQQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAE------------------------KGGLFG----DAIKWNFT 133 (167)
T ss_pred HHHHHHHHHccCCCCceEeEEeeCCCCCCHHHHHHHhh------------------------CCCCCC----CCcCCCCe
Confidence 4554 4568899999 8874 542 333333321100 000000 00112578
Q ss_pred EEEEcCCCCeEEEEEeCC
Q 025522 217 IIVAGPGKSNISYIHRDK 234 (251)
Q Consensus 217 ~fVid~ggg~I~~~h~~~ 234 (251)
+||||++ |+|++.|.+.
T Consensus 134 tflId~~-G~vv~~~~g~ 150 (167)
T PLN02412 134 KFLVSKE-GKVVQRYAPT 150 (167)
T ss_pred eEEECCC-CcEEEEECCC
Confidence 9999998 6999999853
No 34
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.77 E-value=7.5e-18 Score=143.28 Aligned_cols=121 Identities=15% Similarity=0.103 Sum_probs=97.4
Q ss_pred CccccCCCCCcEEecCCC--CeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCC-CHHHH
Q 025522 68 SEDTKNLLDTVKVYDVNG--NAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG-SVEQA 144 (251)
Q Consensus 68 ~~~~g~~ap~f~l~d~~G--~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~-~~~~~ 144 (251)
....|+.+|+|++.|.+| +.+++.++. +++++|++||++||++|+++++.|.+++ +.|++||+|+.+ +.+.+
T Consensus 38 ~~~~g~~~p~f~l~~~~g~g~~~~~~~~~-~gk~vvv~FwatwC~~C~~e~p~l~~l~----~~~~~vi~v~~~~~~~~~ 112 (185)
T PRK15412 38 SALIGKPVPKFRLESLENPGQFYQADVLT-QGKPVLLNVWATWCPTCRAEHQYLNQLS----AQGIRVVGMNYKDDRQKA 112 (185)
T ss_pred hhhcCCCCCCcCCccCCCCCccccHHHhc-CCCEEEEEEECCCCHHHHHHHHHHHHHH----HcCCEEEEEECCCCHHHH
Confidence 456899999999999984 677666653 4567888888999999999999997764 469999999964 56789
Q ss_pred HHHHHHhCCce--EEEcCChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCccccceEEEEcC
Q 025522 145 RTFSEQTKFKG--VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGP 222 (251)
Q Consensus 145 ~~f~~~~~~pf--l~sDp~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~ 222 (251)
++|.++++++| ++.|++..+.++||+.. .|.+||+|+
T Consensus 113 ~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~-----------------------------------------~P~t~vid~ 151 (185)
T PRK15412 113 ISWLKELGNPYALSLFDGDGMLGLDLGVYG-----------------------------------------APETFLIDG 151 (185)
T ss_pred HHHHHHcCCCCceEEEcCCccHHHhcCCCc-----------------------------------------CCeEEEECC
Confidence 99999999999 58898877666665321 356999999
Q ss_pred CCCeEEEEEeCCC
Q 025522 223 GKSNISYIHRDKE 235 (251)
Q Consensus 223 ggg~I~~~h~~~~ 235 (251)
+ |+|.|.|.+..
T Consensus 152 ~-G~i~~~~~G~~ 163 (185)
T PRK15412 152 N-GIIRYRHAGDL 163 (185)
T ss_pred C-ceEEEEEecCC
Confidence 8 69999999744
No 35
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.76 E-value=8.2e-18 Score=142.88 Aligned_cols=88 Identities=11% Similarity=0.245 Sum_probs=76.5
Q ss_pred ccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCC--------CHH
Q 025522 71 TKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG--------SVE 142 (251)
Q Consensus 71 ~g~~ap~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~--------~~~ 142 (251)
.++.+|+|++.|.+|+.++++++ +++++||+|++++|||+|++|+++|+++++++++.|+.||+|+++ +.+
T Consensus 16 ~~~~~p~f~l~d~~G~~vsLs~~-~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~ 94 (183)
T PTZ00256 16 PTKSFFEFEAIDIDGQLVQLSKF-KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEP 94 (183)
T ss_pred CCCcccceEeEcCCCCEEeHHHh-CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHH
Confidence 35679999999999999999998 455677777799999999999999999999999999999999963 346
Q ss_pred HHHHHHH-HhCCce-EEEc
Q 025522 143 QARTFSE-QTKFKG-VYAD 159 (251)
Q Consensus 143 ~~~~f~~-~~~~pf-l~sD 159 (251)
.+++|.. +++++| +++|
T Consensus 95 ~~~~f~~~~~~~~fpv~~d 113 (183)
T PTZ00256 95 EIKEYVQKKFNVDFPLFQK 113 (183)
T ss_pred HHHHHHHHhcCCCCCCceE
Confidence 7888874 789999 8866
No 36
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.76 E-value=5.2e-18 Score=134.99 Aligned_cols=106 Identities=13% Similarity=0.244 Sum_probs=92.1
Q ss_pred CCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeC------CCHHHHHHHHHHhCCce-EE
Q 025522 85 GNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP------GSVEQARTFSEQTKFKG-VY 157 (251)
Q Consensus 85 G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~------~~~~~~~~f~~~~~~pf-l~ 157 (251)
|+.++++++ +++++|++|+++|||+|+.+++.|+++++++++.|+.+|+|+. ++.+.+++|+++++++| ++
T Consensus 13 ~~~v~l~~~--~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 90 (126)
T cd03012 13 DKPLSLAQL--RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVA 90 (126)
T ss_pred CCccCHHHh--CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEE
Confidence 578999998 4567777778999999999999999999999999999999976 45789999999999999 99
Q ss_pred EcCChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCccccceEEEEcCCCCeEEEEEeCC
Q 025522 158 ADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSNISYIHRDK 234 (251)
Q Consensus 158 sDp~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~ggg~I~~~h~~~ 234 (251)
.|++..+++.||+.. .|.+||||++ |+|+|.|.+.
T Consensus 91 ~D~~~~~~~~~~v~~-----------------------------------------~P~~~vid~~-G~v~~~~~G~ 125 (126)
T cd03012 91 NDNDYATWRAYGNQY-----------------------------------------WPALYLIDPT-GNVRHVHFGE 125 (126)
T ss_pred ECCchHHHHHhCCCc-----------------------------------------CCeEEEECCC-CcEEEEEecC
Confidence 999999988887531 2468999998 6999999874
No 37
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.75 E-value=1.2e-17 Score=137.48 Aligned_cols=84 Identities=11% Similarity=0.166 Sum_probs=75.5
Q ss_pred CCCcEEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeC--------CCHHHHHH
Q 025522 75 LDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--------GSVEQART 146 (251)
Q Consensus 75 ap~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~--------~~~~~~~~ 146 (251)
+-+|++.|.+|+.++++++ +++++|++++++|||+|..++++|++++.++++.|+.+|+|++ ++.+.+++
T Consensus 2 ~~~f~l~~~~G~~~~l~~~--~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~ 79 (153)
T TIGR02540 2 FYSFEVKDARGRTVSLEKY--RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIES 79 (153)
T ss_pred cccceeECCCCCEecHHHh--CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHH
Confidence 4579999999999999998 4566888899999999999999999999999999999999995 66789999
Q ss_pred HHHH-hCCce-EEEcC
Q 025522 147 FSEQ-TKFKG-VYADP 160 (251)
Q Consensus 147 f~~~-~~~pf-l~sDp 160 (251)
|+++ ++++| +++|.
T Consensus 80 f~~~~~~~~fp~~~d~ 95 (153)
T TIGR02540 80 FARRNYGVTFPMFSKI 95 (153)
T ss_pred HHHHhcCCCCCccceE
Confidence 9986 89999 98873
No 38
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.74 E-value=3.5e-17 Score=137.51 Aligned_cols=122 Identities=16% Similarity=0.127 Sum_probs=97.0
Q ss_pred CCCCccccCCCCCcEEecCCCCeEeC--CCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCC-CH
Q 025522 65 PSVSEDTKNLLDTVKVYDVNGNAIPI--SDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG-SV 141 (251)
Q Consensus 65 ~~~~~~~g~~ap~f~l~d~~G~~v~l--s~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~-~~ 141 (251)
..+...+|+.+|+|++.|.+|+..++ +++. +++++|++||+.|||.|+++++.|++.+ +.|+++|+|+.+ +.
T Consensus 30 ~~~~~~vG~~ap~f~l~~~~G~~~~~~~~~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~----~~~~~vi~V~~~~~~ 104 (173)
T TIGR00385 30 ALPSALIGKPVPAFPLAALREPLQAYTPEAFI-QGKPVLLNVWASWCPPCRAEHPYLNELA----KDGLPIVGVDYKDQS 104 (173)
T ss_pred cCcchhcCCCCCCccccccCCCCcccCHHHhc-CCCEEEEEEECCcCHHHHHHHHHHHHHH----HcCCEEEEEECCCCh
Confidence 34456789999999999999985444 4543 4567777888999999999999987654 458999999975 44
Q ss_pred HHHHHHHHHhCCce--EEEcCChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCccccceEEE
Q 025522 142 EQARTFSEQTKFKG--VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIV 219 (251)
Q Consensus 142 ~~~~~f~~~~~~pf--l~sDp~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fV 219 (251)
+..++|+++++++| ++.|++.++.++||+.. .|.+|+
T Consensus 105 ~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~-----------------------------------------~P~~~~ 143 (173)
T TIGR00385 105 QNALKFLKELGNPYQAILIDPNGKLGLDLGVYG-----------------------------------------APETFL 143 (173)
T ss_pred HHHHHHHHHcCCCCceEEECCCCchHHhcCCee-----------------------------------------CCeEEE
Confidence 67789999999999 56899988777766421 346999
Q ss_pred EcCCCCeEEEEEeC
Q 025522 220 AGPGKSNISYIHRD 233 (251)
Q Consensus 220 id~ggg~I~~~h~~ 233 (251)
+|++ |+|+|.|.+
T Consensus 144 id~~-G~i~~~~~G 156 (173)
T TIGR00385 144 VDGN-GVILYRHAG 156 (173)
T ss_pred EcCC-ceEEEEEec
Confidence 9998 699999987
No 39
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.73 E-value=4.5e-17 Score=130.89 Aligned_cols=129 Identities=16% Similarity=0.168 Sum_probs=103.1
Q ss_pred CCCCcEEecCCCCeEeCCCccCCCcEEEEEEccCCChh-hHHHHHHHHHcHHHHHHcC---CEEEEEeCC----CHHHHH
Q 025522 74 LLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVL-CRKRADYLAAKKDVMDASG---VALVLIGPG----SVEQAR 145 (251)
Q Consensus 74 ~ap~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~-C~~el~~L~~~~~~~~~~g---v~vVaVs~~----~~~~~~ 145 (251)
.+|+|++.|.+|+.+++.++ +++.+|++|++.||+. |+.+++.|++.++++.+.| +++|+|+.+ +.+.++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~--~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~ 78 (142)
T cd02968 1 IGPDFTLTDQDGRPVTLSDL--KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLK 78 (142)
T ss_pred CCCceEEEcCCCCEEchHHh--CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHH
Confidence 47999999999999999998 4567778888999997 9999999999999998875 999999975 458899
Q ss_pred HHHHHhCCce-EEEcCC---hhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCccccceEEEEc
Q 025522 146 TFSEQTKFKG-VYADPN---HSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAG 221 (251)
Q Consensus 146 ~f~~~~~~pf-l~sDp~---~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid 221 (251)
+|+++++.+| +++|++ ..+.++||+...... +. . . ..+....++.||||
T Consensus 79 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~---~~-------------------~--~---~~~~~~~~~~~lid 131 (142)
T cd02968 79 AYAKAFGPGWIGLTGTPEEIEALAKAFGVYYEKVP---ED-------------------D--G---DYLVDHSAAIYLVD 131 (142)
T ss_pred HHHHHhCCCcEEEECCHHHHHHHHHHhcEEEEecC---CC-------------------C--C---ceeEeccceEEEEC
Confidence 9999999889 999975 788899987754210 00 0 0 00012356899999
Q ss_pred CCCCeEEEEEe
Q 025522 222 PGKSNISYIHR 232 (251)
Q Consensus 222 ~ggg~I~~~h~ 232 (251)
++ |+|++.|.
T Consensus 132 ~~-G~i~~~~~ 141 (142)
T cd02968 132 PD-GKLVRYYG 141 (142)
T ss_pred CC-CCEEEeec
Confidence 98 69999875
No 40
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.71 E-value=1.4e-16 Score=126.37 Aligned_cols=116 Identities=18% Similarity=0.118 Sum_probs=94.3
Q ss_pred CCCCCcEEecCCC--CeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeC-CCHHHHHHHHH
Q 025522 73 NLLDTVKVYDVNG--NAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP-GSVEQARTFSE 149 (251)
Q Consensus 73 ~~ap~f~l~d~~G--~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~-~~~~~~~~f~~ 149 (251)
+.+|+|++.|.+| +.++++++ + ++.+|+.|++.|||.|+.+++.|+++..+. +++||+|+. ++.+.+++|++
T Consensus 1 ~~~p~f~~~~~~g~~~~~~~~~~-~-gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~~~~~~~~~~~ 75 (127)
T cd03010 1 KPAPAFSLPALPGPDKTLTSADL-K-GKPYLLNVWASWCAPCREEHPVLMALARQG---RVPIYGINYKDNPENALAWLA 75 (127)
T ss_pred CCCCCcccccccCCCccccHHHc-C-CCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCCCHHHHHHHHH
Confidence 3689999999998 88888887 3 455666667999999999999999876553 599999996 56689999999
Q ss_pred HhCCce--EEEcCChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCccccceEEEEcCCCCeE
Q 025522 150 QTKFKG--VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSNI 227 (251)
Q Consensus 150 ~~~~pf--l~sDp~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~ggg~I 227 (251)
+++++| +++|++..+.+.||+.. +|.+|++|++ |+|
T Consensus 76 ~~~~~~~~~~~D~~~~~~~~~~v~~-----------------------------------------~P~~~~ld~~-G~v 113 (127)
T cd03010 76 RHGNPYAAVGFDPDGRVGIDLGVYG-----------------------------------------VPETFLIDGD-GII 113 (127)
T ss_pred hcCCCCceEEECCcchHHHhcCCCC-----------------------------------------CCeEEEECCC-ceE
Confidence 999998 77898877776665431 4579999998 699
Q ss_pred EEEEeCCC
Q 025522 228 SYIHRDKE 235 (251)
Q Consensus 228 ~~~h~~~~ 235 (251)
++.+.+.-
T Consensus 114 ~~~~~G~~ 121 (127)
T cd03010 114 RYKHVGPL 121 (127)
T ss_pred EEEEeccC
Confidence 99988743
No 41
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.69 E-value=6.6e-16 Score=119.81 Aligned_cols=82 Identities=15% Similarity=0.242 Sum_probs=69.5
Q ss_pred CCcEEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCc-
Q 025522 76 DTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK- 154 (251)
Q Consensus 76 p~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~p- 154 (251)
|+|++.|.+|+.++++++. +++.+|++|++.||++|+++++.|+++++++ +.++.+++|+.++.+..++|+++++++
T Consensus 1 p~f~l~~~~G~~~~l~~~~-~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~-~~~~~vi~v~~~~~~~~~~~~~~~~~~~ 78 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGIS-PGRPTLLFFLSPTCPVCKKLLPVIRSIARAE-ADWLDVVLASDGEKAEHQRFLKKHGLEA 78 (114)
T ss_pred CCceeecCCCCEEEccccc-CCCeEEEEEECCCCcchHhHhHHHHHHHHHh-cCCcEEEEEeCCCHHHHHHHHHHhCCCC
Confidence 7899999999999999984 3566677778999999999999999987775 357999999888889999999999985
Q ss_pred e-EEEc
Q 025522 155 G-VYAD 159 (251)
Q Consensus 155 f-l~sD 159 (251)
+ ++.|
T Consensus 79 ~p~~~~ 84 (114)
T cd02967 79 FPYVLS 84 (114)
T ss_pred CcEEec
Confidence 6 5543
No 42
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.65 E-value=2.3e-15 Score=113.93 Aligned_cols=93 Identities=22% Similarity=0.277 Sum_probs=83.2
Q ss_pred CcEEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCC--HHHHHHHHHHhCCc
Q 025522 77 TVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS--VEQARTFSEQTKFK 154 (251)
Q Consensus 77 ~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~--~~~~~~f~~~~~~p 154 (251)
+|++.+.+|+.+++.++ .++.+|++|++.||+.|+..++.|.++..++.+.++.+++|+.+. .+.+++|.++++.+
T Consensus 1 ~~~~~~~~g~~~~~~~~--~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~ 78 (116)
T cd02966 1 DFSLPDLDGKPVSLSDL--KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGIT 78 (116)
T ss_pred CccccCCCCCEeehHHc--CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCC
Confidence 57889999999999998 356778888899999999999999999999988899999999998 89999999999999
Q ss_pred e-EEEcCChhHHHHcCCc
Q 025522 155 G-VYADPNHSSYEALSFV 171 (251)
Q Consensus 155 f-l~sDp~~~ly~alGl~ 171 (251)
+ ++.|++..+.+.||+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~ 96 (116)
T cd02966 79 FPVLLDPDGELAKAYGVR 96 (116)
T ss_pred cceEEcCcchHHHhcCcC
Confidence 9 9999988887777754
No 43
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.60 E-value=1.7e-14 Score=113.23 Aligned_cols=117 Identities=14% Similarity=0.215 Sum_probs=93.7
Q ss_pred CCcEEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCC--CHHHHHHHHHHhCC
Q 025522 76 DTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG--SVEQARTFSEQTKF 153 (251)
Q Consensus 76 p~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~--~~~~~~~f~~~~~~ 153 (251)
|+|++.|.+|+.+++.++ +++.+|++|++.||+.|+.+++.|++++++ +.+++|+.+ +.+.+++|.+++++
T Consensus 1 p~f~l~~~~g~~~~~~~~--~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~~~~~~~~~~~~~~~~ 73 (123)
T cd03011 1 PLFTATTLDGEQFDLESL--SGKPVLVYFWATWCPVCRFTSPTVNQLAAD-----YPVVSVALRSGDDGAVARFMQKKGY 73 (123)
T ss_pred CCceeecCCCCEeeHHHh--CCCEEEEEEECCcChhhhhhChHHHHHHhh-----CCEEEEEccCCCHHHHHHHHHHcCC
Confidence 789999999999999997 345666666799999999999999998765 677778765 46899999999999
Q ss_pred ce-EEEcCChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCccccceEEEEcCCCCeEEEEEe
Q 025522 154 KG-VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSNISYIHR 232 (251)
Q Consensus 154 pf-l~sDp~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~ggg~I~~~h~ 232 (251)
+| ++.|++.++.+.||+.. .|..+|+|++ | |++.+.
T Consensus 74 ~~~~~~d~~~~~~~~~~i~~-----------------------------------------~P~~~vid~~-g-i~~~~~ 110 (123)
T cd03011 74 GFPVINDPDGVISARWGVSV-----------------------------------------TPAIVIVDPG-G-IVFVTT 110 (123)
T ss_pred CccEEECCCcHHHHhCCCCc-----------------------------------------ccEEEEEcCC-C-eEEEEe
Confidence 99 99999988888776432 3468999987 5 998887
Q ss_pred CCCCCCCCCHHHHHH
Q 025522 233 DKEAGDDPDIQDILK 247 (251)
Q Consensus 233 ~~~~~D~~~~~eIL~ 247 (251)
+ ..+.++|.+
T Consensus 111 g-----~~~~~~~~~ 120 (123)
T cd03011 111 G-----VTSEWGLRL 120 (123)
T ss_pred c-----cCCHHHHHh
Confidence 5 334455544
No 44
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.59 E-value=3.4e-14 Score=137.95 Aligned_cols=121 Identities=12% Similarity=0.114 Sum_probs=101.0
Q ss_pred ccccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCC------CHH
Q 025522 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG------SVE 142 (251)
Q Consensus 69 ~~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~------~~~ 142 (251)
...++.+|+|++.|.+|+.+.++ ++++||++||+.||++|+.+++.|++++++++..++.||+|+.+ +.+
T Consensus 32 ~~~~~~lP~f~l~D~dG~~v~ls----kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~ 107 (521)
T PRK14018 32 ATVPHTLSTLKTADNRPASVYLK----KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDG 107 (521)
T ss_pred ccccCCCCCeEeecCCCceeecc----CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHH
Confidence 56778899999999999999886 46789999999999999999999999999988789999999862 335
Q ss_pred HHHHHHHHhCCc-e-EEEcCChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCccccceEEEE
Q 025522 143 QARTFSEQTKFK-G-VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVA 220 (251)
Q Consensus 143 ~~~~f~~~~~~p-f-l~sDp~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVi 220 (251)
..++|.+..+++ + ++.|++.++.+.||+.. +|.+|||
T Consensus 108 ~~~~~~~~~~y~~~pV~~D~~~~lak~fgV~g-----------------------------------------iPTt~II 146 (521)
T PRK14018 108 DFQKWYAGLDYPKLPVLTDNGGTLAQSLNISV-----------------------------------------YPSWAII 146 (521)
T ss_pred HHHHHHHhCCCcccceeccccHHHHHHcCCCC-----------------------------------------cCeEEEE
Confidence 677788777774 5 89999988888776531 4578999
Q ss_pred cCCCCeEEEEEeCCC
Q 025522 221 GPGKSNISYIHRDKE 235 (251)
Q Consensus 221 d~ggg~I~~~h~~~~ 235 (251)
|++ |+|++.+.+..
T Consensus 147 Dkd-GkIV~~~~G~~ 160 (521)
T PRK14018 147 GKD-GDVQRIVKGSI 160 (521)
T ss_pred cCC-CeEEEEEeCCC
Confidence 998 69999998843
No 45
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=6.9e-14 Score=117.25 Aligned_cols=154 Identities=16% Similarity=0.145 Sum_probs=126.4
Q ss_pred CCCccccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHH
Q 025522 66 SVSEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQAR 145 (251)
Q Consensus 66 ~~~~~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~ 145 (251)
.+....|+.+|+|+.....| .|.+.+++++.+.||+--++.+.|.|..|+-.++.+.++|+++|+++|+.|+|+.+..+
T Consensus 3 ~~~l~lgd~~PNfea~Tt~g-~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~vesH~ 81 (224)
T KOG0854|consen 3 GPRLRLGDTVPNFEADTTVG-KIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVESHK 81 (224)
T ss_pred CCcccccCcCCCcccccccc-ceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHHHH
Confidence 45567899999999866655 78999999999999999999999999999999999999999999999999999998777
Q ss_pred HHHHHh-------C--Cce-EEEcCChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCccccc
Q 025522 146 TFSEQT-------K--FKG-VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQG 215 (251)
Q Consensus 146 ~f~~~~-------~--~pf-l~sDp~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~g 215 (251)
.|.++- + ++| |+.|+++++.-.|||-.... .. -.+.+...+
T Consensus 82 ~Wi~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e------------------~~-----------~~~~~~T~R 132 (224)
T KOG0854|consen 82 DWIKDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEE------------------KK-----------NIGDGKTVR 132 (224)
T ss_pred HHHHHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhH------------------cC-----------CCCCCceEE
Confidence 776653 3 889 99999999999998865311 00 012345678
Q ss_pred eEEEEcCCCCeEEEEEeCCCCCCCCCHHHHHHHhhC
Q 025522 216 GIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACCS 251 (251)
Q Consensus 216 g~fVid~ggg~I~~~h~~~~~~D~~~~~eIL~al~~ 251 (251)
+.||+||+ .+|+..+....+-.| ..+|||.++-|
T Consensus 133 avfvi~pd-kKirLs~lYP~ttGR-N~dEiLRvids 166 (224)
T KOG0854|consen 133 AVFVIDPD-KKIRLSFLYPSTTGR-NFDEILRVIDS 166 (224)
T ss_pred EEEEECCC-ceEEEEEEcccccCc-CHHHHHHHHHH
Confidence 99999999 499998887666554 57799887643
No 46
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.54 E-value=9.6e-14 Score=118.49 Aligned_cols=84 Identities=13% Similarity=0.193 Sum_probs=74.7
Q ss_pred CCCCCcEEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeC--------CCHHHH
Q 025522 73 NLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--------GSVEQA 144 (251)
Q Consensus 73 ~~ap~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~--------~~~~~~ 144 (251)
+.+++|++.|.+|+.++|+++ .+++||+.++++||++|. ++++|+++++++++.|+.|++|.+ ++.+.+
T Consensus 3 ~~~~~f~~~~~~G~~v~Ls~~--~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei 79 (183)
T PRK10606 3 DSILTTVVTTIDGEVTTLEKY--AGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEI 79 (183)
T ss_pred CCccCcEeECCCCCEEeHHHh--CCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHH
Confidence 468999999999999999998 456778888999999995 799999999999999999999988 467889
Q ss_pred HHHHH-HhCCce-EEEc
Q 025522 145 RTFSE-QTKFKG-VYAD 159 (251)
Q Consensus 145 ~~f~~-~~~~pf-l~sD 159 (251)
++|++ +++++| +++|
T Consensus 80 ~~f~~~~~g~~Fpv~~k 96 (183)
T PRK10606 80 KTYCRTTWGVTFPMFSK 96 (183)
T ss_pred HHHHHHccCCCceeEEE
Confidence 99997 789999 9954
No 47
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.51 E-value=9.7e-14 Score=118.48 Aligned_cols=132 Identities=15% Similarity=0.155 Sum_probs=96.8
Q ss_pred CccccCCCCCcEEecC-----CC-----CeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEE----
Q 025522 68 SEDTKNLLDTVKVYDV-----NG-----NAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVAL---- 133 (251)
Q Consensus 68 ~~~~g~~ap~f~l~d~-----~G-----~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~v---- 133 (251)
....|+.+|.+++.|- +| +.++.++| .+++.|++||+.||+.|+.|.+.|.++ +++|+.+
T Consensus 22 ~~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l--~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~~~~~~~~y~ 95 (184)
T TIGR01626 22 NLQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAEL--AGKVRVVHHIAGRTSAKEXNASLIDAI----KAAKFPPVKYQ 95 (184)
T ss_pred hhhcCCcCCceEecCCceEEEcCCcccceeccHHHc--CCCEEEEEEEecCCChhhccchHHHHH----HHcCCCccccc
Confidence 3678888888887654 33 45556666 489999999999999999999999887 6678888
Q ss_pred --EEEeCCCH-HHHHHHHH------HhCCce--EEEcCChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhccccc
Q 025522 134 --VLIGPGSV-EQARTFSE------QTKFKG--VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSF 202 (251)
Q Consensus 134 --VaVs~~~~-~~~~~f~~------~~~~pf--l~sDp~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~ 202 (251)
++|+.++. .....|.+ +.++|+ ++.|++..+..+||+..
T Consensus 96 ~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v~~~~gv~~------------------------------ 145 (184)
T TIGR01626 96 TTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAVKNAWQLNS------------------------------ 145 (184)
T ss_pred ceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchHHHhcCCCC------------------------------
Confidence 99998863 34444544 446776 99999888777776442
Q ss_pred ccCcCCCCccccceE-EEEcCCCCeEEEEEeCCCCCCCCCHHHHHHHh
Q 025522 203 ERDTVSRGGWQQGGI-IVAGPGKSNISYIHRDKEAGDDPDIQDILKAC 249 (251)
Q Consensus 203 ~g~~~~g~~~q~gg~-fVid~ggg~I~~~h~~~~~~D~~~~~eIL~al 249 (251)
+|.+ ||+|++ |+|++.|.+.-.. .++++++..+
T Consensus 146 -----------~P~T~fVIDk~-GkVv~~~~G~l~~--ee~e~~~~li 179 (184)
T TIGR01626 146 -----------EDSAIIVLDKT-GKVKFVKEGALSD--SDIQTVISLV 179 (184)
T ss_pred -----------CCceEEEECCC-CcEEEEEeCCCCH--HHHHHHHHHH
Confidence 2235 999998 6999999984333 2444555444
No 48
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.51 E-value=1.1e-13 Score=114.23 Aligned_cols=68 Identities=16% Similarity=0.140 Sum_probs=57.8
Q ss_pred CeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHc-------CCEEEEEeCCCH-HHHHHHHHHhCCce
Q 025522 86 NAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS-------GVALVLIGPGSV-EQARTFSEQTKFKG 155 (251)
Q Consensus 86 ~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~-------gv~vVaVs~~~~-~~~~~f~~~~~~pf 155 (251)
+.++++++ ++++|++.||++|||+|+++++.|.+++.++.+. ++.||+|+.+.. +..++|.++.++++
T Consensus 16 ~~~~ls~~--kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~ 91 (146)
T cd03008 16 EREIVARL--ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKW 91 (146)
T ss_pred ccccHHHh--CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCc
Confidence 45677887 5689999999999999999999999999888654 799999999854 56889999998654
No 49
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.50 E-value=1.4e-13 Score=143.95 Aligned_cols=137 Identities=16% Similarity=0.178 Sum_probs=109.5
Q ss_pred CCccccCCCCCcEEec--CCCCeEeCC-CccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeC---C-
Q 025522 67 VSEDTKNLLDTVKVYD--VNGNAIPIS-DLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP---G- 139 (251)
Q Consensus 67 ~~~~~g~~ap~f~l~d--~~G~~v~ls-~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~---~- 139 (251)
.....|+.+|+|+..+ .+|+++++. ++ ++++||+.||+.||++|+.+++.|+++++++++.|+.||+|+. +
T Consensus 389 ~~~~~g~~~p~f~~~~~~~~g~~~~l~~~l--kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~ 466 (1057)
T PLN02919 389 ESKKTATKVPEFPPKLDWLNTAPLQFRRDL--KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDN 466 (1057)
T ss_pred hccccCCcCCCCcccccccCCccccchhhc--CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccc
Confidence 3456799999999876 689999984 66 4678999999999999999999999999999989999999973 2
Q ss_pred --CHHHHHHHHHHhCCce-EEEcCChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCccccce
Q 025522 140 --SVEQARTFSEQTKFKG-VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGG 216 (251)
Q Consensus 140 --~~~~~~~f~~~~~~pf-l~sDp~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg 216 (251)
+.+.+++|.++++++| ++.|.+.++.+.||+.. +|.
T Consensus 467 ~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~~V~~-----------------------------------------iPt 505 (1057)
T PLN02919 467 EKDLEAIRNAVLRYNISHPVVNDGDMYLWRELGVSS-----------------------------------------WPT 505 (1057)
T ss_pred cccHHHHHHHHHHhCCCccEEECCchHHHHhcCCCc-----------------------------------------cce
Confidence 3467889999999999 99998887777765421 456
Q ss_pred EEEEcCCCCeEEEEEeCCCCCCCCCHHHHHHHh
Q 025522 217 IIVAGPGKSNISYIHRDKEAGDDPDIQDILKAC 249 (251)
Q Consensus 217 ~fVid~ggg~I~~~h~~~~~~D~~~~~eIL~al 249 (251)
.||+|++ |+|++.+.+.. +...++++++.+
T Consensus 506 ~ilid~~-G~iv~~~~G~~--~~~~l~~~l~~~ 535 (1057)
T PLN02919 506 FAVVSPN-GKLIAQLSGEG--HRKDLDDLVEAA 535 (1057)
T ss_pred EEEECCC-CeEEEEEeccc--CHHHHHHHHHHH
Confidence 8999998 69999877633 334555555543
No 50
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.49 E-value=9.1e-14 Score=110.83 Aligned_cols=71 Identities=20% Similarity=0.286 Sum_probs=60.4
Q ss_pred EecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHc--CCEEEEEeCCCH-HHHHHHHHHhC
Q 025522 80 VYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS--GVALVLIGPGSV-EQARTFSEQTK 152 (251)
Q Consensus 80 l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~--gv~vVaVs~~~~-~~~~~f~~~~~ 152 (251)
|.|.+|+.++++++ .+++||++|++.||+.|+++++.|++.++++++. +++|++|+.+.. +..++|.++.+
T Consensus 3 l~~~~G~~v~l~~~--~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~ 76 (131)
T cd03009 3 LLRNDGGKVPVSSL--EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMP 76 (131)
T ss_pred ccccCCCCccHHHh--CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCC
Confidence 56889999999998 4567899999999999999999999999999875 799999999755 56667766654
No 51
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.40 E-value=9.3e-13 Score=105.58 Aligned_cols=70 Identities=17% Similarity=0.294 Sum_probs=59.9
Q ss_pred CCC-CeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHc--CCEEEEEeCCCH-HHHHHHHHHhCCce
Q 025522 83 VNG-NAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS--GVALVLIGPGSV-EQARTFSEQTKFKG 155 (251)
Q Consensus 83 ~~G-~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~--gv~vVaVs~~~~-~~~~~f~~~~~~pf 155 (251)
.|| +.++++++ ++++||++|+++||+.|+++++.|++.++++++. +++|++|+.+.. +..++|.++++ ++
T Consensus 4 ~~~~~~v~l~~~--~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~-~~ 77 (132)
T cd02964 4 LDGEGVVPVSAL--EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMP-PW 77 (132)
T ss_pred ccCCccccHHHh--CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCC-Ce
Confidence 344 49999998 5688999999999999999999999999999875 899999998754 68889999986 44
No 52
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.40 E-value=2.9e-12 Score=109.07 Aligned_cols=104 Identities=10% Similarity=0.056 Sum_probs=78.7
Q ss_pred cccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHH
Q 025522 70 DTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSE 149 (251)
Q Consensus 70 ~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~ 149 (251)
.....-++|++ .+|+.++++++. |++||+.|||+|+++++.|++.++++ |+.|++|+.+...
T Consensus 50 ~~~~~~~~f~l--~dG~~v~lsd~~------lV~FwaswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~~~------- 111 (181)
T PRK13728 50 TEKPAPRWFRL--SNGRQVNLADWK------VVLFMQGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQG------- 111 (181)
T ss_pred cCCCCCCccCC--CCCCEeehhHce------EEEEECCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCCCC-------
Confidence 34456788888 499999999982 66689999999999999999988875 7999999987542
Q ss_pred HhCCce-EEEc-CChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCccccceEEEEcCCCCeE
Q 025522 150 QTKFKG-VYAD-PNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSNI 227 (251)
Q Consensus 150 ~~~~pf-l~sD-p~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~ggg~I 227 (251)
...| ++.| .+..+.+.||... ...|.+||+|++ |++
T Consensus 112 --~~~fPv~~dd~~~~~~~~~g~~~---------------------------------------~~iPttfLId~~-G~i 149 (181)
T PRK13728 112 --DTAFPEALPAPPDVMQTFFPNIP---------------------------------------VATPTTFLVNVN-TLE 149 (181)
T ss_pred --CCCCceEecCchhHHHHHhCCCC---------------------------------------CCCCeEEEEeCC-CcE
Confidence 2567 7775 5555555554310 125689999998 688
Q ss_pred EE-EEeC
Q 025522 228 SY-IHRD 233 (251)
Q Consensus 228 ~~-~h~~ 233 (251)
.+ .|++
T Consensus 150 ~~~~~~G 156 (181)
T PRK13728 150 ALPLLQG 156 (181)
T ss_pred EEEEEEC
Confidence 76 6887
No 53
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=6.9e-11 Score=99.13 Aligned_cols=142 Identities=15% Similarity=0.136 Sum_probs=110.6
Q ss_pred ccCCCCCcE---EecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHH
Q 025522 71 TKNLLDTVK---VYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (251)
Q Consensus 71 ~g~~ap~f~---l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f 147 (251)
...++|+|. +.|-.=+.++|+++ .++.+|++||...+...|-.|..++++.+++|++.|.+|+++|.|+...+.+|
T Consensus 6 ~~~p~p~fk~~aVVdG~f~e~~L~dy-~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW 84 (196)
T KOG0852|consen 6 VFKPAPDFKGTAVVDGEFKEIKLSDY-KGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAW 84 (196)
T ss_pred cCCCCCCcceeEEEcCcceEEeehhh-cccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhH
Confidence 344557776 33444478999998 45778899999999999999999999999999999999999999999999998
Q ss_pred HH----HhCCc---e-EEEcCChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCccccceEEE
Q 025522 148 SE----QTKFK---G-VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIV 219 (251)
Q Consensus 148 ~~----~~~~p---f-l~sDp~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fV 219 (251)
+. +.++- . +++|+++++.+.||+.... +|..+.|.||
T Consensus 85 ~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~-----------------------------------~G~~lRglfI 129 (196)
T KOG0852|consen 85 INTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKED-----------------------------------EGIALRGLFI 129 (196)
T ss_pred hcCchhhCCcCccccceeeccchhhHHhcCceecC-----------------------------------CCcceeeeEE
Confidence 74 34444 6 9999999999999987632 1235779999
Q ss_pred EcCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025522 220 AGPGKSNISYIHRDKEAGDDPDIQDILKACC 250 (251)
Q Consensus 220 id~ggg~I~~~h~~~~~~D~~~~~eIL~al~ 250 (251)
||++ |.++-.-++.-+- --+++|+|..++
T Consensus 130 Id~~-gi~R~it~NDlpv-gRSVdE~lRLvq 158 (196)
T KOG0852|consen 130 IDPD-GILRQITINDLPV-GRSVDETLRLVQ 158 (196)
T ss_pred Eccc-cceEEeeecccCC-CccHHHHHHHHH
Confidence 9998 6887655553333 335777776653
No 54
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=2.3e-10 Score=93.85 Aligned_cols=139 Identities=11% Similarity=0.194 Sum_probs=116.4
Q ss_pred CCccccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHH
Q 025522 67 VSEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (251)
Q Consensus 67 ~~~~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~ 146 (251)
..+++|++||+|++.+.+.+.+++.++ ++++.||..|+.--.|.|-.+.+.+++....+ .++.|+.||.|-+...++
T Consensus 16 ~~~~vGd~ap~ftl~~~dL~~v~l~~~-~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~--~~~~Vl~IS~DLPFAq~R 92 (158)
T COG2077 16 NEPQVGDKAPDFTLVGKDLNDVSLADF-AGKKKVISVFPSIDTPVCATQVRKFNEEAAKL--GNTVVLCISMDLPFAQKR 92 (158)
T ss_pred CCCccCCcCCceEEEcCcccceecccc-CCceEEEEEccCCCCchhhHHHHHHHHHHhcc--CCcEEEEEeCCChhHHhh
Confidence 457999999999999999999999998 56778899999999999999999999988766 459999999999999999
Q ss_pred HHHHhCCce--EEEc-CChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCccccceEEEEcCC
Q 025522 147 FSEQTKFKG--VYAD-PNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPG 223 (251)
Q Consensus 147 f~~~~~~pf--l~sD-p~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~g 223 (251)
||...++.- .+|| .++.+-+.||+..... |- .++.-+++||+|..
T Consensus 93 fC~aeGi~nv~~lSd~r~~~Fge~yGv~I~eg----pL----------------------------~gLlARaV~V~De~ 140 (158)
T COG2077 93 FCGAEGIENVITLSDFRDRAFGENYGVLINEG----PL----------------------------AGLLARAVFVLDEN 140 (158)
T ss_pred hhhhcCcccceEhhhhhhhhhhHhhCEEeccc----cc----------------------------cCeeeeEEEEEcCC
Confidence 999999995 8888 4555668888765421 00 12345689999987
Q ss_pred CCeEEEEEeCCCCCCCCC
Q 025522 224 KSNISYIHRDKEAGDDPD 241 (251)
Q Consensus 224 gg~I~~~h~~~~~~D~~~ 241 (251)
|+|.|..+-.+..++|+
T Consensus 141 -g~V~y~elv~eit~ePn 157 (158)
T COG2077 141 -GKVTYSELVPEITEEPN 157 (158)
T ss_pred -CcEEEEEccchhhcCCC
Confidence 69999999888888875
No 55
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.19 E-value=1.9e-10 Score=86.43 Aligned_cols=63 Identities=17% Similarity=0.201 Sum_probs=53.3
Q ss_pred CcEEEEEEccCCChhhHHHHHHHHHcHHHHH-HcCCEEEEEeCCCH-HHHHHHHHHhCCce-EEEc
Q 025522 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMD-ASGVALVLIGPGSV-EQARTFSEQTKFKG-VYAD 159 (251)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~-~~gv~vVaVs~~~~-~~~~~f~~~~~~pf-l~sD 159 (251)
+++++++|++.||+.|+++++.|.++++++. ..++++|+|+.+.. +..+++.++.+.++ .+..
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~ 66 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPF 66 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEET
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEee
Confidence 4788999999999999999999999999998 78999999999865 78899999987777 4443
No 56
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.97 E-value=3.9e-09 Score=87.68 Aligned_cols=49 Identities=16% Similarity=0.263 Sum_probs=40.8
Q ss_pred CCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCH
Q 025522 84 NGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (251)
Q Consensus 84 ~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~ 141 (251)
.|+.+.++++ .|++||++|||+|+++++.|++.++++ |+.|++|+.++.
T Consensus 43 ~G~~~~l~~~------~lvnFWAsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~~ 91 (153)
T TIGR02738 43 QGRHANQDDY------ALVFFYQSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDGQ 91 (153)
T ss_pred cchhhhcCCC------EEEEEECCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCCC
Confidence 3777777665 288999999999999999999988765 789999998764
No 57
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=6.2e-09 Score=85.95 Aligned_cols=150 Identities=15% Similarity=0.228 Sum_probs=114.3
Q ss_pred CCccccCCCCC--cEEecCC-----CCeEeCCCccCCCcEEEEEEccCCChh-hHHHHHHHHHcHHHHHHcCCE-EEEEe
Q 025522 67 VSEDTKNLLDT--VKVYDVN-----GNAIPISDLWKDRKAVVAFARHFGCVL-CRKRADYLAAKKDVMDASGVA-LVLIG 137 (251)
Q Consensus 67 ~~~~~g~~ap~--f~l~d~~-----G~~v~ls~l~~~~~vVLvF~R~~~Cp~-C~~el~~L~~~~~~~~~~gv~-vVaVs 137 (251)
-..++|+.+|+ .++...+ |.++.+++|.+++|++|+=.++++.|. |+.+++-+.+..++|+++|+. ||.|+
T Consensus 7 a~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvS 86 (171)
T KOG0541|consen 7 APIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVS 86 (171)
T ss_pred ccccccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEe
Confidence 34577888888 4432222 238999999999999999999999999 788999999999999999987 77788
Q ss_pred CCCHHHHHHHHHHhCCce---EEEcCChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCcccc
Q 025522 138 PGSVEQARTFSEQTKFKG---VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQ 214 (251)
Q Consensus 138 ~~~~~~~~~f~~~~~~pf---l~sDp~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~ 214 (251)
.+++-..++|.+.++-.- +++|++.+..+++|+.......+ .|+|. -
T Consensus 87 VnDpFv~~aW~k~~g~~~~V~f~aD~~g~ftk~lgleld~~d~~-------------~g~RS-----------------~ 136 (171)
T KOG0541|consen 87 VNDPFVMKAWAKSLGANDHVKFVADPAGEFTKSLGLELDLSDKL-------------LGVRS-----------------R 136 (171)
T ss_pred cCcHHHHHHHHhhcCccceEEEEecCCCceeeeccceeeecccc-------------Ccccc-----------------c
Confidence 899999999999988753 99999999999999987653211 12221 1
Q ss_pred ceEEEEcCCCCeEEEEEeCCCCCC--CCCHHHHHHH
Q 025522 215 GGIIVAGPGKSNISYIHRDKEAGD--DPDIQDILKA 248 (251)
Q Consensus 215 gg~fVid~ggg~I~~~h~~~~~~D--~~~~~eIL~a 248 (251)
+=..|++ + |+|.+..+..+..| -...+.||++
T Consensus 137 R~a~vve-n-gkV~~~nvE~~g~~~t~ssa~~il~~ 170 (171)
T KOG0541|consen 137 RYALVVE-N-GKVTVVNVEEGGTDFTVSSAEDILKQ 170 (171)
T ss_pred cEEEEEe-C-CeEEEEEeccCCCceEEecHHHHhhc
Confidence 1245665 3 59999999877774 3456666654
No 58
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=98.77 E-value=1.2e-07 Score=80.07 Aligned_cols=100 Identities=14% Similarity=0.228 Sum_probs=75.5
Q ss_pred ccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEccCCC-hhhHHHHHHHHHcHHHHHHc--CCEEEEEeCC----CHHH
Q 025522 71 TKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGC-VLCRKRADYLAAKKDVMDAS--GVALVLIGPG----SVEQ 143 (251)
Q Consensus 71 ~g~~ap~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~C-p~C~~el~~L~~~~~~~~~~--gv~vVaVs~~----~~~~ 143 (251)
.....|+|++.|.+|+.++++++ .++++|++|=...| -.|-..+..|++..+++.+. .+++|.|+.| +++.
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~~~--~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~ 105 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLDDL--KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEV 105 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGGGG--TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHH
T ss_pred CCccCCCcEEEcCCCCEecHHHh--CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHH
Confidence 45568899999999999999998 55677777778888 57999999999999988764 6899999987 4589
Q ss_pred HHHHHHHhCCce--EEEcC--ChhHHHHcCCcc
Q 025522 144 ARTFSEQTKFKG--VYADP--NHSSYEALSFVS 172 (251)
Q Consensus 144 ~~~f~~~~~~pf--l~sDp--~~~ly~alGl~~ 172 (251)
+++|++..+-.+ +..+. -.++.+.|++..
T Consensus 106 L~~Y~~~~~~~~~~ltg~~~~i~~l~~~~~v~~ 138 (174)
T PF02630_consen 106 LKKYAKKFGPDFIGLTGSREEIEELAKQFGVYY 138 (174)
T ss_dssp HHHHHHCHTTTCEEEEEEHHHHHHHHHHCTHCE
T ss_pred HHHHHHhcCCCcceeEeCHHHHHHHHHHHHhhh
Confidence 999999987776 33222 244555555443
No 59
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=5.6e-08 Score=79.92 Aligned_cols=106 Identities=16% Similarity=0.143 Sum_probs=93.6
Q ss_pred ccccCCCCCcEEecC------CC-CeEeCCCccCCCcEEEEEEccCCChhhHH-HHHHHHHcHHHHHHcCCE-EEEEeCC
Q 025522 69 EDTKNLLDTVKVYDV------NG-NAIPISDLWKDRKAVVAFARHFGCVLCRK-RADYLAAKKDVMDASGVA-LVLIGPG 139 (251)
Q Consensus 69 ~~~g~~ap~f~l~d~------~G-~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~-el~~L~~~~~~~~~~gv~-vVaVs~~ 139 (251)
..+|+++|..++... +| ..++..+|.+++++||+=+++++.|.|.. +++.+.+++++|+++||. |+.|+..
T Consensus 3 ~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVN 82 (165)
T COG0678 3 IMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVN 82 (165)
T ss_pred cccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeC
Confidence 468999999888754 23 46777888889999999999999999998 999999999999999997 8888999
Q ss_pred CHHHHHHHHHHhCCce---EEEcCChhHHHHcCCcccc
Q 025522 140 SVEQARTFSEQTKFKG---VYADPNHSSYEALSFVSGV 174 (251)
Q Consensus 140 ~~~~~~~f~~~~~~pf---l~sDp~~~ly~alGl~~~~ 174 (251)
+.-...+|.+..+... +++|.+.++-+++|+....
T Consensus 83 D~FVm~AWak~~g~~~~I~fi~Dg~geFTk~~Gm~~d~ 120 (165)
T COG0678 83 DAFVMNAWAKSQGGEGNIKFIPDGNGEFTKAMGMLVDK 120 (165)
T ss_pred cHHHHHHHHHhcCCCccEEEecCCCchhhhhcCceeec
Confidence 9999999999999883 9999999999999998754
No 60
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.61 E-value=9.7e-08 Score=79.30 Aligned_cols=79 Identities=13% Similarity=0.165 Sum_probs=66.2
Q ss_pred CCcEEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcC--CEEEEEeCCCH-HHHHHHHHHhC
Q 025522 76 DTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG--VALVLIGPGSV-EQARTFSEQTK 152 (251)
Q Consensus 76 p~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~g--v~vVaVs~~~~-~~~~~f~~~~~ 152 (251)
....|.+.+|..+..++.++ +++|.+.|++.|||+||...+.|.+.|+++++.+ ..||.||.|.. ++..+|..++.
T Consensus 13 ~g~~l~~~~~~~~~~~~~l~-gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~ 91 (157)
T KOG2501|consen 13 RGNRLRKQDGTEVLASEALQ-GKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHH 91 (157)
T ss_pred cCCeeeccCCccchHhHhhC-CcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcC
Confidence 34778889999988886654 5999999999999999999999999999998664 78999999865 67888888765
Q ss_pred Cce
Q 025522 153 FKG 155 (251)
Q Consensus 153 ~pf 155 (251)
.+-
T Consensus 92 ~~W 94 (157)
T KOG2501|consen 92 GDW 94 (157)
T ss_pred CCe
Confidence 554
No 61
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.51 E-value=2.6e-07 Score=83.50 Aligned_cols=51 Identities=22% Similarity=0.343 Sum_probs=41.5
Q ss_pred CeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCH
Q 025522 86 NAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (251)
Q Consensus 86 ~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~ 141 (251)
+...++++ .++.+|++|++.||++|+.+++.|++...++ |+.|++|+.+..
T Consensus 157 ~~~~l~~l--~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~~ 207 (271)
T TIGR02740 157 KDRVMKDL--AKKSGLFFFFKSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDGG 207 (271)
T ss_pred HHHHHHHh--cCCeEEEEEECCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCCC
Confidence 34667776 3567888888999999999999999987765 699999998764
No 62
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.50 E-value=8.9e-08 Score=78.29 Aligned_cols=83 Identities=13% Similarity=0.139 Sum_probs=60.7
Q ss_pred EEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHh---CCce
Q 025522 79 KVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQT---KFKG 155 (251)
Q Consensus 79 ~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~---~~pf 155 (251)
++.+.+++...+.+....++.+|++|++.||+.|+..++.|.++++++.. .+.++.|..+... ....++++ ++|.
T Consensus 2 ~~~~~~~~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~-~~~~~~~~~V~~iPt 79 (142)
T cd02950 2 SLEQLAASSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPK-WLPEIDRYRVDGIPH 79 (142)
T ss_pred ChHHHhhccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCcc-cHHHHHHcCCCCCCE
Confidence 34556667777777666778889999999999999999999999888753 4788888877542 12233333 5777
Q ss_pred -EEEcCChh
Q 025522 156 -VYADPNHS 163 (251)
Q Consensus 156 -l~sDp~~~ 163 (251)
++.|++.+
T Consensus 80 ~v~~~~~G~ 88 (142)
T cd02950 80 FVFLDREGN 88 (142)
T ss_pred EEEECCCCC
Confidence 88887654
No 63
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=98.46 E-value=2.9e-06 Score=73.83 Aligned_cols=139 Identities=14% Similarity=0.133 Sum_probs=93.4
Q ss_pred CcEEecCCCCeEeCCCccCCCcEEEEEEccCCCh-hhHHHHHHHHHcHHHHH---HcCCEEEEEeCC----CHHHHHHHH
Q 025522 77 TVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCV-LCRKRADYLAAKKDVMD---ASGVALVLIGPG----SVEQARTFS 148 (251)
Q Consensus 77 ~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp-~C~~el~~L~~~~~~~~---~~gv~vVaVs~~----~~~~~~~f~ 148 (251)
+|++.|.+|+++++.++ ++++.|+||-.+.|| .|-..+..|.....++. ...+++|.|+.| +++.+++|.
T Consensus 49 ~f~l~d~~G~~~~~~~l--~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~ 126 (207)
T COG1999 49 DFELTDQDGKPFTLKDL--KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYA 126 (207)
T ss_pred ceeeecCCCCEeecccc--CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHh
Confidence 79999999999999999 556677777788898 69999999999988887 456889999987 457888998
Q ss_pred H-HhCCce-EEEc---CChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCcc-ccceEEEEcC
Q 025522 149 E-QTKFKG-VYAD---PNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGW-QQGGIIVAGP 222 (251)
Q Consensus 149 ~-~~~~pf-l~sD---p~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~-q~gg~fVid~ 222 (251)
+ ...-.+ -+.. ...++.++|++.........+ + .... --...|++|+
T Consensus 127 ~~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~-----------------------~----~y~~~Hs~~~~lid~ 179 (207)
T COG1999 127 ELNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDS-----------------------Q----NYTIDHSAGFYLIDA 179 (207)
T ss_pred cccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCC-----------------------C----CceeeeeeEEEEECC
Confidence 8 322223 3332 234667777766531100000 0 0001 1346889999
Q ss_pred CCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025522 223 GKSNISYIHRDKEAGDDPDIQDILKACC 250 (251)
Q Consensus 223 ggg~I~~~h~~~~~~D~~~~~eIL~al~ 250 (251)
+ |++...+..... .++|++.++
T Consensus 180 ~-G~~~~~~~~~~~-----~~~i~~~l~ 201 (207)
T COG1999 180 D-GRFLGTYDYGEP-----PEEIAADLK 201 (207)
T ss_pred C-CeEEEEecCCCC-----hHHHHHHHH
Confidence 8 588776665333 566666553
No 64
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.34 E-value=1.7e-06 Score=68.31 Aligned_cols=46 Identities=17% Similarity=0.253 Sum_probs=33.4
Q ss_pred CCC-cEEEEEEccCCChhhHHHHHHHHH---cHHHHHHcCCEEEEEeCCCH
Q 025522 95 KDR-KAVVAFARHFGCVLCRKRADYLAA---KKDVMDASGVALVLIGPGSV 141 (251)
Q Consensus 95 ~~~-~vVLvF~R~~~Cp~C~~el~~L~~---~~~~~~~~gv~vVaVs~~~~ 141 (251)
+++ +.+|++|++.||++|+...+.+.+ ..+.++ .++.++.|..+..
T Consensus 11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~ 60 (125)
T cd02951 11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIR-AHFVVVYINIDGD 60 (125)
T ss_pred HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHH-hheEEEEEEccCC
Confidence 456 778888899999999999988863 344443 3677777776543
No 65
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.34 E-value=1.9e-06 Score=66.17 Aligned_cols=56 Identities=11% Similarity=0.006 Sum_probs=45.9
Q ss_pred CcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCc
Q 025522 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (251)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~p 154 (251)
+++||+.|++.||++|+..++.|.++.+++ .++.++.|..+......++++++++.
T Consensus 15 ~k~vvv~F~a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~~~~~~~l~~~~~V~ 70 (103)
T cd02985 15 GRLVVLEFALKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDENDSTMELCRREKII 70 (103)
T ss_pred CCEEEEEEECCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCCChHHHHHHHHcCCC
Confidence 678999999999999999999999998887 57889999987655556677665543
No 66
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.22 E-value=2e-06 Score=65.93 Aligned_cols=61 Identities=7% Similarity=0.104 Sum_probs=47.2
Q ss_pred cCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce
Q 025522 94 WKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG 155 (251)
Q Consensus 94 ~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf 155 (251)
...++.+|+.|++.||++|+..++.|.+.+.++....+.++.|..++.+.+++|.-+ .+|.
T Consensus 14 i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~~~~~~~~v~-~~Pt 74 (102)
T cd02948 14 LSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTIDTLKRYRGK-CEPT 74 (102)
T ss_pred HccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCHHHHHHcCCC-cCcE
Confidence 345677888999999999999999999998888655678888988866655555333 4554
No 67
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=2.3e-05 Score=64.95 Aligned_cols=82 Identities=16% Similarity=0.212 Sum_probs=71.3
Q ss_pred CCCCcEEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCC--------CHHHHH
Q 025522 74 LLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG--------SVEQAR 145 (251)
Q Consensus 74 ~ap~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~--------~~~~~~ 145 (251)
.+-+|++.|.+|++++|+++ +++||||.--++-|.+-- +...|+.+|++++++|..|+++-+. +.++++
T Consensus 4 ~~yd~~~~~~~G~~~~l~~~--~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~ 80 (162)
T COG0386 4 SIYDFSVKDIDGEPVSLSDY--KGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIA 80 (162)
T ss_pred ccccceeeccCCCCccHHHh--CCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHH
Confidence 46689999999999999998 678888888899999987 8899999999999999999999754 568999
Q ss_pred HHHHH-hCCce-EEE
Q 025522 146 TFSEQ-TKFKG-VYA 158 (251)
Q Consensus 146 ~f~~~-~~~pf-l~s 158 (251)
+|++. ++.+| ++.
T Consensus 81 ~fC~~~YgVtFp~f~ 95 (162)
T COG0386 81 KFCQLNYGVTFPMFS 95 (162)
T ss_pred HHHHhccCceeeeee
Confidence 99965 47888 765
No 68
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.15 E-value=4.1e-06 Score=64.29 Aligned_cols=63 Identities=6% Similarity=0.025 Sum_probs=44.8
Q ss_pred CCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCC-CHH-HHHHHHHHhCCce-EEEcCC
Q 025522 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG-SVE-QARTFSEQTKFKG-VYADPN 161 (251)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~-~~~-~~~~f~~~~~~pf-l~sDp~ 161 (251)
+++++|+.|++.||++|+..++.|.++.+++. ++.++.|..+ ... -.++| .-.++|- ++.+.+
T Consensus 17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~--~~~~~~vd~~~~~~~l~~~~-~V~~~PT~~lf~~g 82 (100)
T cd02999 17 REDYTAVLFYASWCPFSASFRPHFNALSSMFP--QIRHLAIEESSIKPSLLSRY-GVVGFPTILLFNST 82 (100)
T ss_pred CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc--cCceEEEECCCCCHHHHHhc-CCeecCEEEEEcCC
Confidence 46778888899999999999999999988874 5778888765 222 22222 2235565 666655
No 69
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=98.14 E-value=2.8e-05 Score=67.54 Aligned_cols=94 Identities=14% Similarity=0.265 Sum_probs=75.5
Q ss_pred CCcEEecCCCCeEeCCCccCCCcEEEE-EEc-----cCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHH
Q 025522 76 DTVKVYDVNGNAIPISDLWKDRKAVVA-FAR-----HFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSE 149 (251)
Q Consensus 76 p~f~l~d~~G~~v~ls~l~~~~~vVLv-F~R-----~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~ 149 (251)
.+..+...+|+ ++|.+|++++..||+ .|- ..+||.|...+..+......|.+.++.+++||....+++.+|.+
T Consensus 47 ~~Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~i~afk~ 125 (211)
T PF05988_consen 47 KDYVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEKIEAFKR 125 (211)
T ss_pred CCeEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHHHHHHHH
Confidence 34666666665 999999987654333 332 46999999999999999999999999999999999999999999
Q ss_pred HhCCce-EEEcCChhHHHHcCC
Q 025522 150 QTKFKG-VYADPNHSSYEALSF 170 (251)
Q Consensus 150 ~~~~pf-l~sDp~~~ly~alGl 170 (251)
+.|++| .||.-+..+-..|++
T Consensus 126 rmGW~~pw~Ss~gs~Fn~D~~~ 147 (211)
T PF05988_consen 126 RMGWTFPWYSSYGSDFNYDFGV 147 (211)
T ss_pred hcCCCceEEEcCCCcccccccc
Confidence 999999 998765544444443
No 70
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.12 E-value=1.6e-05 Score=62.49 Aligned_cols=78 Identities=14% Similarity=0.252 Sum_probs=64.5
Q ss_pred CcEEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCC--------CHHHHHHHH
Q 025522 77 TVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG--------SVEQARTFS 148 (251)
Q Consensus 77 ~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~--------~~~~~~~f~ 148 (251)
+|++.|.+|+.++|+++ +++++||.==++-|++-. +..+|+++++++.+.|..|+++-+. +.+.+++|+
T Consensus 3 df~~~~~~G~~v~l~~y--~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~ 79 (108)
T PF00255_consen 3 DFSAKDIDGKPVSLSKY--KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFC 79 (108)
T ss_dssp GSEEEBTTSSEEEGGGG--TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHH
T ss_pred ceeeeCCCCCEECHHHc--CCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHHHH
Confidence 68999999999999998 445555555599999999 9999999999999999999998764 346899999
Q ss_pred HH-hCCce-EE
Q 025522 149 EQ-TKFKG-VY 157 (251)
Q Consensus 149 ~~-~~~pf-l~ 157 (251)
.. .+..| |+
T Consensus 80 ~~~~~~~F~vf 90 (108)
T PF00255_consen 80 KEKFGVTFPVF 90 (108)
T ss_dssp CHCHT-SSEEB
T ss_pred HhccCCcccce
Confidence 77 56677 55
No 71
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=97.99 E-value=1.2e-05 Score=62.61 Aligned_cols=64 Identities=11% Similarity=0.054 Sum_probs=47.7
Q ss_pred CCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce-EEEc
Q 025522 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG-VYAD 159 (251)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf-l~sD 159 (251)
.++++|++|++.||+.|+...+.+.++.++++..++.++.|..+....+..-..-.++|- ++.+
T Consensus 23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~ 87 (111)
T cd02963 23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGII 87 (111)
T ss_pred CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEE
Confidence 457888899999999999999999999999987788999998876433322222335665 4333
No 72
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=97.97 E-value=2.6e-05 Score=59.89 Aligned_cols=47 Identities=17% Similarity=0.303 Sum_probs=31.1
Q ss_pred CCcEEEEEEccCCChhhHHHHHHHHHcHHHHH--HcCCEEEEEeCCCHH
Q 025522 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMD--ASGVALVLIGPGSVE 142 (251)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~--~~gv~vVaVs~~~~~ 142 (251)
+++.+|++|...|||+|++.-+++.+..+-.+ +.++.++.+..++..
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSR 52 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcc
Confidence 34556666679999999988888876544222 336888888887664
No 73
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.97 E-value=2.3e-05 Score=60.66 Aligned_cols=65 Identities=11% Similarity=0.180 Sum_probs=47.8
Q ss_pred CcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCH-HH-HHHHHHHhCCce-EEEcCC
Q 025522 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQ-ARTFSEQTKFKG-VYADPN 161 (251)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~-~~-~~~f~~~~~~pf-l~sDp~ 161 (251)
++.+|++|.+.||++|+...+.+.++..+++..++.+..|..+.. .. ..+...-.++|- ++.+.+
T Consensus 21 ~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~f~~~ 88 (109)
T cd02993 21 NQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILFFPKN 88 (109)
T ss_pred CCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEEEcCC
Confidence 467788888999999999999999999888877899999988762 22 222223346776 555554
No 74
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=6.2e-05 Score=63.02 Aligned_cols=86 Identities=15% Similarity=0.187 Sum_probs=71.1
Q ss_pred ccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCC--------CHH
Q 025522 71 TKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG--------SVE 142 (251)
Q Consensus 71 ~g~~ap~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~--------~~~ 142 (251)
....+=+|++.|.+|+.|+|+.+ .++|||+.-=++-|.+-...-.+|.+++++++.+|..|++.-|. +.+
T Consensus 10 ~~~siydf~~~d~~G~~v~l~~y--rGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~ 87 (171)
T KOG1651|consen 10 EKGSIYDFSAKDLDGEYVSLSQY--RGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNE 87 (171)
T ss_pred hhcceeeeEEecCCCCCccHHHh--CCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcH
Confidence 34567789999999999999999 67787777779999999988889999999999999999999764 336
Q ss_pred HHHHHH-HHhCCce-EEE
Q 025522 143 QARTFS-EQTKFKG-VYA 158 (251)
Q Consensus 143 ~~~~f~-~~~~~pf-l~s 158 (251)
++..|+ .+++..| |+.
T Consensus 88 Ei~~f~~~r~~~~f~if~ 105 (171)
T KOG1651|consen 88 EILNFVKVRYGAEFPIFQ 105 (171)
T ss_pred HHHHHHHhccCCCCccEe
Confidence 777887 4556666 553
No 75
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=97.94 E-value=2e-05 Score=58.93 Aligned_cols=64 Identities=8% Similarity=-0.085 Sum_probs=46.5
Q ss_pred CcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce-EEEcCC
Q 025522 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG-VYADPN 161 (251)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf-l~sDp~ 161 (251)
++.+|++|++.||+.|+...+.|.++..++.. .+.++.|..+....+.+-..-.++|- ++.+..
T Consensus 12 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g 76 (96)
T cd02956 12 QVPVVVDFWAPRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAG 76 (96)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCC
Confidence 56788888999999999999999999888754 47778888776544433223345676 555643
No 76
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.88 E-value=4.3e-05 Score=58.36 Aligned_cols=64 Identities=9% Similarity=0.013 Sum_probs=43.9
Q ss_pred CCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcC--CEEEEEeCCCHHHHHHHHHHhCCce-EEEc
Q 025522 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG--VALVLIGPGSVEQARTFSEQTKFKG-VYAD 159 (251)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~g--v~vVaVs~~~~~~~~~f~~~~~~pf-l~sD 159 (251)
..+.+|++|++.||++|+...+.|.++..+++..+ +.+..+..+....+.+-..-.++|- ++.+
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~ 80 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLK 80 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEc
Confidence 34578899999999999999999999998887654 6666676665332222112235665 4444
No 77
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=97.85 E-value=2.9e-05 Score=61.42 Aligned_cols=70 Identities=14% Similarity=0.263 Sum_probs=46.2
Q ss_pred CCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCH--HHHHHHHHHh-CCce-EEEcCChhHHH
Q 025522 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV--EQARTFSEQT-KFKG-VYADPNHSSYE 166 (251)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~--~~~~~f~~~~-~~pf-l~sDp~~~ly~ 166 (251)
.++.||++|.+.||+.|+...+.+.+...... .+..++.|..+.. ...+.|.... ++|. ++.|++.++-+
T Consensus 18 ~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 18 SGKPLMLLIHKTWCGACKALKPKFAESKEISE-LSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred cCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCch
Confidence 35667888889999999999999988655432 3445555555432 2334443332 3898 99998866544
No 78
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.82 E-value=1.7e-05 Score=59.62 Aligned_cols=66 Identities=6% Similarity=0.002 Sum_probs=45.7
Q ss_pred CCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHH--cCCEEEEEeCCCHHHHHHHHHHhCCce-EEEcCC
Q 025522 95 KDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDA--SGVALVLIGPGSVEQARTFSEQTKFKG-VYADPN 161 (251)
Q Consensus 95 ~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~--~gv~vVaVs~~~~~~~~~f~~~~~~pf-l~sDp~ 161 (251)
.+++ +|+.|++.||+.|+..++.+.+.+.+++. ..+.++.|.++....+.+-..-..+|- ++...+
T Consensus 15 ~~~~-~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 83 (102)
T cd03005 15 AEGN-HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFKDG 83 (102)
T ss_pred hcCC-EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEeCC
Confidence 3445 77777899999999999999999988875 468888888876543332222335665 444433
No 79
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=97.81 E-value=2.5e-05 Score=59.04 Aligned_cols=69 Identities=13% Similarity=0.128 Sum_probs=48.7
Q ss_pred cCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce-EEEcCChh
Q 025522 94 WKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG-VYADPNHS 163 (251)
Q Consensus 94 ~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf-l~sDp~~~ 163 (251)
.+..++++++|++.||+.|+...+.|.+...++.. ++.++.|..+....+..-..-.++|. ++.+.+..
T Consensus 10 ~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~ 79 (97)
T cd02949 10 HESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKEL 79 (97)
T ss_pred HhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeE
Confidence 34567899999999999999999999998877753 57888888875543332222346777 55554433
No 80
>PRK10996 thioredoxin 2; Provisional
Probab=97.81 E-value=1.1e-05 Score=65.63 Aligned_cols=73 Identities=14% Similarity=0.082 Sum_probs=50.7
Q ss_pred eCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce-EEEcCCh
Q 025522 89 PISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG-VYADPNH 162 (251)
Q Consensus 89 ~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf-l~sDp~~ 162 (251)
.+.++.+.++.++++|++.||++|+...+.|.+...++.. ++.++.|..+....+.+-..-.++|. ++.+..+
T Consensus 44 ~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~ 117 (139)
T PRK10996 44 TLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQ 117 (139)
T ss_pred HHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCE
Confidence 3445555678889999999999999999999998877643 57788887776544333223346776 5555443
No 81
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=97.79 E-value=3.4e-05 Score=58.49 Aligned_cols=47 Identities=13% Similarity=0.077 Sum_probs=39.0
Q ss_pred CCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHH
Q 025522 95 KDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (251)
Q Consensus 95 ~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~ 142 (251)
.+++.++++|++.||+.|+...+.+.++..+++. .+.++.|.++...
T Consensus 16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~~~ 62 (101)
T cd03003 16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGDDR 62 (101)
T ss_pred cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCccH
Confidence 4457788888899999999999999999888864 3788889988643
No 82
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=97.78 E-value=9e-05 Score=56.44 Aligned_cols=65 Identities=12% Similarity=0.135 Sum_probs=45.8
Q ss_pred CCCcEEEEEEccCCChhhHHHHHHH---HHcHHHHHHcCCEEEEEeCCCH-HHHHHHHHHh---CCce-EEEcC
Q 025522 95 KDRKAVVAFARHFGCVLCRKRADYL---AAKKDVMDASGVALVLIGPGSV-EQARTFSEQT---KFKG-VYADP 160 (251)
Q Consensus 95 ~~~~vVLvF~R~~~Cp~C~~el~~L---~~~~~~~~~~gv~vVaVs~~~~-~~~~~f~~~~---~~pf-l~sDp 160 (251)
+.++.+|+.|++.||++|+...+.+ .+....+.+ ++.++.|..+.. ....++++++ ++|. ++.|+
T Consensus 9 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~ 81 (104)
T cd02953 9 AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP 81 (104)
T ss_pred HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 4567788888899999999998877 455666654 788888887542 2345566665 4566 77776
No 83
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.77 E-value=8.4e-05 Score=56.64 Aligned_cols=65 Identities=11% Similarity=0.088 Sum_probs=46.7
Q ss_pred CCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHH---hCCce-EEEcCCh
Q 025522 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQ---TKFKG-VYADPNH 162 (251)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~---~~~pf-l~sDp~~ 162 (251)
.++.+|++|++.||+.|+...+.+.++..++. ..+.++.|.++..+ ..+++++ .++|. ++.+++.
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~-~~~~~~~v~~~~~~-~~~~~~~~~i~~~Pt~~~~~~~~ 85 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELD-GLVQVAAVDCDEDK-NKPLCGKYGVQGFPTLKVFRPPK 85 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhc-CCceEEEEecCccc-cHHHHHHcCCCcCCEEEEEeCCC
Confidence 35668888889999999999999999888775 35888888888621 2233333 35666 6666665
No 84
>PRK09381 trxA thioredoxin; Provisional
Probab=97.70 E-value=5.6e-05 Score=58.01 Aligned_cols=66 Identities=9% Similarity=-0.000 Sum_probs=47.0
Q ss_pred CCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce-EEEcCCh
Q 025522 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG-VYADPNH 162 (251)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf-l~sDp~~ 162 (251)
..+.+++.|+..|||.|+...+.|+++..++.. ++.++.|..+....+.+-..-..+|- ++.+...
T Consensus 20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~ 86 (109)
T PRK09381 20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGE 86 (109)
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCCChhHHHhCCCCcCCEEEEEeCCe
Confidence 355678888899999999999999999888864 58889998886544433223335665 4444333
No 85
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=97.68 E-value=0.00017 Score=54.76 Aligned_cols=64 Identities=9% Similarity=-0.007 Sum_probs=45.1
Q ss_pred CcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce-EEEcCC
Q 025522 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG-VYADPN 161 (251)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf-l~sDp~ 161 (251)
++.+|+.|.+.||+.|+...+.+.++..++. .++.++.|.++....+.+-..-.++|- ++.+.+
T Consensus 19 ~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 83 (104)
T cd03004 19 KEPWLVDFYAPWCGPCQALLPELRKAARALK-GKVKVGSVDCQKYESLCQQANIRAYPTIRLYPGN 83 (104)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhc-CCcEEEEEECCchHHHHHHcCCCcccEEEEEcCC
Confidence 4578888889999999999999999988874 358888888887543322112234565 444444
No 86
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=97.68 E-value=3.2e-05 Score=58.17 Aligned_cols=50 Identities=14% Similarity=0.145 Sum_probs=37.7
Q ss_pred CCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHc-CCEEEEEeCCC
Q 025522 91 SDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS-GVALVLIGPGS 140 (251)
Q Consensus 91 s~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~-gv~vVaVs~~~ 140 (251)
.++.++++.+++.|++.||+.|+...+.+.+....+.+. .+.++.|-.+.
T Consensus 11 ~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~ 61 (104)
T cd02997 11 RKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK 61 (104)
T ss_pred HHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC
Confidence 334445567888899999999999999999998888653 35555566654
No 87
>PTZ00051 thioredoxin; Provisional
Probab=97.67 E-value=3.4e-05 Score=57.81 Aligned_cols=48 Identities=10% Similarity=0.147 Sum_probs=37.5
Q ss_pred CccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCH
Q 025522 92 DLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (251)
Q Consensus 92 ~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~ 141 (251)
++.+.++.++++|++.||+.|+...+.|.+...++ .++.++.|..+..
T Consensus 13 ~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~--~~~~~~~vd~~~~ 60 (98)
T PTZ00051 13 STLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEY--TKMVFVKVDVDEL 60 (98)
T ss_pred HHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHc--CCcEEEEEECcch
Confidence 34455678888888999999999999998887754 3577888877654
No 88
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.67 E-value=8.3e-05 Score=55.80 Aligned_cols=64 Identities=14% Similarity=0.177 Sum_probs=45.2
Q ss_pred CcEEEEEEccCCChhhHHHHHHHHHcHHHHHH-cCCEEEEEeCCC-HH-HHHHHHHHhCCce-EEEcCC
Q 025522 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDA-SGVALVLIGPGS-VE-QARTFSEQTKFKG-VYADPN 161 (251)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~-~gv~vVaVs~~~-~~-~~~~f~~~~~~pf-l~sDp~ 161 (251)
++.++++|++.||+.|++..+.+.+...+++. .++.++.|..+. .. ..++| .-.++|. ++.+++
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~-~i~~~P~~~~~~~~ 85 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKY-GVSGFPTLKFFPKG 85 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhC-CCCCcCEEEEEeCC
Confidence 44678888899999999999999999888863 457777787766 32 22222 2346776 555555
No 89
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.64 E-value=6.9e-05 Score=55.95 Aligned_cols=71 Identities=10% Similarity=0.056 Sum_probs=47.8
Q ss_pred cCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcC-CEEEEEeCCCHHHHHHHHHHhCCce-EEEcCChhH
Q 025522 94 WKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG-VALVLIGPGSVEQARTFSEQTKFKG-VYADPNHSS 164 (251)
Q Consensus 94 ~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~g-v~vVaVs~~~~~~~~~f~~~~~~pf-l~sDp~~~l 164 (251)
...++++++.|+..||+.|+...+.+.+....++..+ +.++.|..+....+.+-..-.++|- ++.+.+..+
T Consensus 10 ~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~~~ 82 (102)
T TIGR01126 10 VLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGKKP 82 (102)
T ss_pred hccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCCcc
Confidence 3456788888889999999999999999888886553 7777666654432222112234565 666766543
No 90
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=97.62 E-value=8.5e-05 Score=61.67 Aligned_cols=47 Identities=13% Similarity=-0.025 Sum_probs=40.6
Q ss_pred CcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHH
Q 025522 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQ 143 (251)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~ 143 (251)
++.+|+.|++.||++|+...+.+.++..++...+++++.|..+....
T Consensus 47 ~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~ 93 (152)
T cd02962 47 RVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPN 93 (152)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHH
Confidence 46788888999999999999999999988876779999999886543
No 91
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.62 E-value=7.3e-05 Score=54.94 Aligned_cols=67 Identities=13% Similarity=0.097 Sum_probs=48.3
Q ss_pred CccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHH-HcCCEEEEEeCCCHHHHHHHHHHh---CCce-EEEcCC
Q 025522 92 DLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMD-ASGVALVLIGPGSVEQARTFSEQT---KFKG-VYADPN 161 (251)
Q Consensus 92 ~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~-~~gv~vVaVs~~~~~~~~~f~~~~---~~pf-l~sDp~ 161 (251)
+...+++.+|++|...||+.|+...+.+.+....++ ..++.++.|..+.. ..+++++ ++|- ++.+++
T Consensus 10 ~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~i~~~Pt~~~~~~~ 81 (101)
T cd02961 10 ELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN---NDLCSEYGVRGYPTIKLFPNG 81 (101)
T ss_pred HHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccch---HHHHHhCCCCCCCEEEEEcCC
Confidence 333455577888888999999999999999888876 56788888887763 2333343 5665 666666
No 92
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.62 E-value=0.00021 Score=53.56 Aligned_cols=65 Identities=12% Similarity=0.169 Sum_probs=47.3
Q ss_pred CCcEEEEEEccCCChhhHHHHHHHHHcHHHHHH-cCCEEEEEeCCCHHHHHHHHHHhCCce-EEEcCC
Q 025522 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDA-SGVALVLIGPGSVEQARTFSEQTKFKG-VYADPN 161 (251)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~-~gv~vVaVs~~~~~~~~~f~~~~~~pf-l~sDp~ 161 (251)
.++.++++|++.||+.|+...+.+.+..++++. ..+.+..|..+..+....+ .-.++|- ++...+
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~-~~~~~Pt~~~~~~~ 83 (104)
T cd02995 17 SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDVPSEF-VVDGFPTILFFPAG 83 (104)
T ss_pred CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhc-cCCCCCEEEEEcCC
Confidence 346788888999999999999999999988866 4688888888765433333 2256776 444443
No 93
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=97.62 E-value=0.00012 Score=56.28 Aligned_cols=50 Identities=8% Similarity=0.012 Sum_probs=37.9
Q ss_pred CccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHc-----CCEEEEEeCCCH
Q 025522 92 DLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS-----GVALVLIGPGSV 141 (251)
Q Consensus 92 ~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~-----gv~vVaVs~~~~ 141 (251)
+..+..+.+|++|.+.||+.|+...+.+.+...++++. .+.++.|.++..
T Consensus 13 ~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~ 67 (108)
T cd02996 13 DILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE 67 (108)
T ss_pred HHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC
Confidence 34455677889999999999999999999988877542 255666666654
No 94
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=97.57 E-value=0.00041 Score=54.67 Aligned_cols=63 Identities=10% Similarity=-0.070 Sum_probs=45.8
Q ss_pred CCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHH--HHHHHhCCce--EEEc
Q 025522 95 KDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQAR--TFSEQTKFKG--VYAD 159 (251)
Q Consensus 95 ~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~--~f~~~~~~pf--l~sD 159 (251)
++.+.+|+.|.+.||++|+...+.+.++.++++.. +.++.|.++....+. +|.- .++|- ++-|
T Consensus 27 ~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d~~~~l~~~~~~I-~~~PTl~lf~~ 93 (113)
T cd03006 27 TDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCWWPQGKCRKQKHF-FYFPVIHLYYR 93 (113)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECCCChHHHHHhcCC-cccCEEEEEEC
Confidence 45678888888999999999999999999888543 788889887654332 3321 24564 5544
No 95
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=97.56 E-value=0.00012 Score=54.56 Aligned_cols=64 Identities=13% Similarity=0.050 Sum_probs=42.8
Q ss_pred CcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce-EEEcCC
Q 025522 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG-VYADPN 161 (251)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf-l~sDp~ 161 (251)
++.++++|++.||+.|+...+.|.++..++ ..++.++.|..+....+.+-..-.++|. ++.+..
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 78 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEA-FPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNG 78 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHh-CCceEEEEEccccCHHHHHhcCCccccEEEEEECC
Confidence 467888888999999999999998888776 4567777776654332222222335665 444433
No 96
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.53 E-value=0.00037 Score=52.31 Aligned_cols=65 Identities=8% Similarity=-0.033 Sum_probs=44.3
Q ss_pred CCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce-EEEcCC
Q 025522 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG-VYADPN 161 (251)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf-l~sDp~ 161 (251)
.++.+|+.|++.||+.|+...+.+.+...++.. .+.++.|..+....+.+-..-.++|. ++.+.+
T Consensus 17 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~ 82 (103)
T cd03001 17 SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAG 82 (103)
T ss_pred CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcchHHHHHHCCCCccCEEEEECCC
Confidence 355566677799999999999999998877653 47788887775543322222345666 555655
No 97
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.48 E-value=0.0001 Score=52.89 Aligned_cols=64 Identities=16% Similarity=0.128 Sum_probs=45.2
Q ss_pred CCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHH-HHHHHHHHhCCce-EEEcCCh
Q 025522 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE-QARTFSEQTKFKG-VYADPNH 162 (251)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~-~~~~f~~~~~~pf-l~sDp~~ 162 (251)
+.+.++++|...||+.|++..+.|.+...+ ..++.++.|..+... ..++| .-.++|. ++.+.+.
T Consensus 9 ~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~-~v~~~P~~~~~~~g~ 74 (93)
T cd02947 9 SAKPVVVDFWAPWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDENPELAEEY-GVRSIPTFLFFKNGK 74 (93)
T ss_pred cCCcEEEEEECCCChhHHHhhHHHHHHHHH--CCCceEEEEECCCChhHHHhc-CcccccEEEEEECCE
Confidence 446678888899999999999999887766 578899999888633 33333 2335666 5555443
No 98
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=97.48 E-value=0.00022 Score=56.80 Aligned_cols=57 Identities=14% Similarity=0.233 Sum_probs=44.2
Q ss_pred ccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCH--------HHHHHHHHHhC
Q 025522 93 LWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV--------EQARTFSEQTK 152 (251)
Q Consensus 93 l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~--------~~~~~f~~~~~ 152 (251)
..+.+..++++|.+.|||+|+...+.|.+..++ .++.++.|..+.. +.+.+|.++++
T Consensus 19 ~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~---~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~ 83 (122)
T TIGR01295 19 ALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ---TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFG 83 (122)
T ss_pred HHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh---cCCcEEEEECCCccCcCcccHHHHHHHHHHcC
Confidence 345567788889999999999999999998776 5577888888731 25667777765
No 99
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=97.47 E-value=0.0004 Score=52.38 Aligned_cols=43 Identities=12% Similarity=0.039 Sum_probs=36.1
Q ss_pred EEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHH
Q 025522 100 VVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (251)
Q Consensus 100 VLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~ 142 (251)
+|+.|++.||++|+...+.+.++..+++..++.+..|..+...
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~ 61 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEP 61 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCH
Confidence 5688889999999999999999988776667888888877543
No 100
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=97.47 E-value=0.00024 Score=52.68 Aligned_cols=65 Identities=12% Similarity=0.041 Sum_probs=44.5
Q ss_pred CcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce-EEEcCCh
Q 025522 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG-VYADPNH 162 (251)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf-l~sDp~~ 162 (251)
++.++++|+..||+.|+...+.|.+...++. ..+.++.|..+....+..-..-..+|- ++.+...
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYE-GKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhc-CCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc
Confidence 4577788889999999999999998887764 358888888776543322222235665 5544433
No 101
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=97.44 E-value=0.00022 Score=56.53 Aligned_cols=74 Identities=15% Similarity=0.022 Sum_probs=48.6
Q ss_pred CcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce-EEEcCChhHHHHcCCc
Q 025522 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG-VYADPNHSSYEALSFV 171 (251)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf-l~sDp~~~ly~alGl~ 171 (251)
.+++|+.|++.||++|+.-.+.|.++..++... +.++-|-.+....+.+-..-..+|- ++.-....+.+..|..
T Consensus 14 ~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v~~~~G~~ 88 (114)
T cd02954 14 EKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHMKIDLGTG 88 (114)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHccCc-eEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEEEEcCCC
Confidence 567888899999999999999999988876422 5777788776544433333334665 4433344444444543
No 102
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=97.41 E-value=0.00062 Score=50.70 Aligned_cols=66 Identities=11% Similarity=0.090 Sum_probs=46.5
Q ss_pred CcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce-EEEcCChh
Q 025522 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG-VYADPNHS 163 (251)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf-l~sDp~~~ 163 (251)
.+.+|++|...||+.|+...+.|.++..++.. ++.++-|..+....+.+-..-.++|. ++...+..
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~ 83 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGKE 83 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTEE
T ss_pred CCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhhccchhhhccCCCCCCEEEEEECCcE
Confidence 45566666678999999999999999998877 89999999986533222222335666 55554443
No 103
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.41 E-value=0.0015 Score=57.12 Aligned_cols=93 Identities=15% Similarity=0.293 Sum_probs=76.1
Q ss_pred EecCCCCeEeCCCccCCCcEEEE--EE----ccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCC
Q 025522 80 VYDVNGNAIPISDLWKDRKAVVA--FA----RHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (251)
Q Consensus 80 l~d~~G~~v~ls~l~~~~~vVLv--F~----R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~ 153 (251)
+.+....+.+|.+|++++.-||| |+ |-.+||.|..-+..+.-....|+..++.+++|+....+.+..|..+.|+
T Consensus 56 ~Fe~~~G~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRAPl~~l~~~k~rmGW 135 (247)
T COG4312 56 VFETENGKKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRAPLEELVAYKRRMGW 135 (247)
T ss_pred EeecCCcchhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecCcHHHHHHHHHhcCC
Confidence 34444448899999987654443 22 3348999999999999999999999999999999999999999999999
Q ss_pred ce-EEEcCChhHHHHcCCcc
Q 025522 154 KG-VYADPNHSSYEALSFVS 172 (251)
Q Consensus 154 pf-l~sDp~~~ly~alGl~~ 172 (251)
.| .+|+.+..+-+.|.+..
T Consensus 136 ~f~w~Ss~~s~Fn~Df~vsf 155 (247)
T COG4312 136 QFPWVSSTDSDFNRDFQVSF 155 (247)
T ss_pred cceeEeccCccccccccccc
Confidence 99 99998877766666543
No 104
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.41 E-value=0.0014 Score=58.16 Aligned_cols=62 Identities=13% Similarity=0.094 Sum_probs=55.7
Q ss_pred CCccccCCCCCcEEecCCCCe-EeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHH
Q 025522 67 VSEDTKNLLDTVKVYDVNGNA-IPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDA 128 (251)
Q Consensus 67 ~~~~~g~~ap~f~l~d~~G~~-v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~ 128 (251)
.....|..||+.+|.+.+|+. .++.|+.++++.+|++|...=||+=+..+.+++++.++|.+
T Consensus 71 ~~a~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d 133 (237)
T PF00837_consen 71 KEAKLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSD 133 (237)
T ss_pred cceeCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhh
Confidence 346789999999999999999 99999988877888888888899999999999999998865
No 105
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=97.40 E-value=0.00045 Score=54.73 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=40.7
Q ss_pred CCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhC
Q 025522 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTK 152 (251)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~ 152 (251)
++++||+.|.+.||++|+.--+-|.++.+++.+. +.++-|..+... +++++++
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVDev~---dva~~y~ 65 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVDKVP---VYTQYFD 65 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc-eEEEEEeccccH---HHHHhcC
Confidence 4678999999999999999999999998888433 777777777543 3444443
No 106
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=97.19 E-value=0.0017 Score=50.84 Aligned_cols=43 Identities=14% Similarity=-0.012 Sum_probs=34.6
Q ss_pred CcEEEEEEccCCChhhHHHHHHHHHcHHHHHHc-C-CEEEEEeCC
Q 025522 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS-G-VALVLIGPG 139 (251)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~-g-v~vVaVs~~ 139 (251)
++.+|+.|++.||++|+...+.+.+...+++.. + +.+..|.++
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~ 63 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCA 63 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEecc
Confidence 468888899999999999999999998888643 3 666666654
No 107
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.15 E-value=0.0021 Score=46.92 Aligned_cols=65 Identities=18% Similarity=0.227 Sum_probs=44.1
Q ss_pred CcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCC--CHHHHHHHHH-HhCCce--EEEcCCh
Q 025522 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG--SVEQARTFSE-QTKFKG--VYADPNH 162 (251)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~--~~~~~~~f~~-~~~~pf--l~sDp~~ 162 (251)
.+++++.|++.||+.|+..++.|.+...++.. ++.++.|... ..+....|.. -..+|- ++.|.+.
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 101 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE 101 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch
Confidence 34444444599999999999999999888765 7888888885 3344444432 345554 4455554
No 108
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.07 E-value=0.0038 Score=45.73 Aligned_cols=63 Identities=16% Similarity=0.202 Sum_probs=44.7
Q ss_pred CcEEEEEEccCCChhhHHHHHHHHHc--HHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce-EEEcC
Q 025522 97 RKAVVAFARHFGCVLCRKRADYLAAK--KDVMDASGVALVLIGPGSVEQARTFSEQTKFKG-VYADP 160 (251)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L~~~--~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf-l~sDp 160 (251)
++.|+++|.+.||+.|+..-..+-+. ..++-..++..+-|-.++.+....+.. .++|. ++.||
T Consensus 17 ~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ldp 82 (82)
T PF13899_consen 17 GKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLDP 82 (82)
T ss_dssp TSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSSSEEEEEET
T ss_pred CCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccCCEEEEeCC
Confidence 55666666899999999998887554 233234788888888887765444433 67998 88876
No 109
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.07 E-value=0.0014 Score=42.62 Aligned_cols=59 Identities=14% Similarity=0.120 Sum_probs=43.8
Q ss_pred EEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHH---hCCce-EEEcCC
Q 025522 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQ---TKFKG-VYADPN 161 (251)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~---~~~pf-l~sDp~ 161 (251)
|++|+..||+.|++....+.+. .....++.++.+..+.......+... ...|. ++.|++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4677899999999999999998 55677999999999887655443222 24555 665554
No 110
>PHA02278 thioredoxin-like protein
Probab=97.01 E-value=0.00052 Score=53.19 Aligned_cols=45 Identities=11% Similarity=0.230 Sum_probs=34.8
Q ss_pred CCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCC
Q 025522 95 KDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (251)
Q Consensus 95 ~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~ 140 (251)
..++.+|+.|++.||++|+...+.|.++.++.. ..+.++-|..+.
T Consensus 12 ~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~-~~~~~~~vdvd~ 56 (103)
T PHA02278 12 RQKKDVIVMITQDNCGKCEILKSVIPMFQESGD-IKKPILTLNLDA 56 (103)
T ss_pred hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhc-CCceEEEEECCc
Confidence 346678888899999999999999998876532 235677777774
No 111
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=96.96 E-value=0.0016 Score=51.96 Aligned_cols=43 Identities=12% Similarity=0.144 Sum_probs=34.3
Q ss_pred CcEEEEEEcc-------CCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCC
Q 025522 97 RKAVVAFARH-------FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (251)
Q Consensus 97 ~~vVLvF~R~-------~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~ 140 (251)
++.|++.|.+ .||++|+...+.|.+...++. .++.++-|..+.
T Consensus 21 ~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~-~~v~fv~Vdvd~ 70 (119)
T cd02952 21 GKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP-EDCVFIYCDVGD 70 (119)
T ss_pred CCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC-CCCEEEEEEcCC
Confidence 3456666667 999999999999999888764 358888888875
No 112
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=96.95 E-value=0.0027 Score=49.65 Aligned_cols=62 Identities=11% Similarity=0.219 Sum_probs=40.9
Q ss_pred CcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce-EEEcC
Q 025522 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG-VYADP 160 (251)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf-l~sDp 160 (251)
...++++|.+.||++|+...+-|.+...+. ..++++.|..+....+..-..-..+|. ++.+.
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~--~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~ 84 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS--DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQD 84 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc--CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeC
Confidence 445888889999999999888888877654 347778887765432222112234666 55543
No 113
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0019 Score=50.45 Aligned_cols=52 Identities=13% Similarity=0.115 Sum_probs=42.0
Q ss_pred CcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCC
Q 025522 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (251)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~ 153 (251)
++.+|+.|.+.||++|+.-.+-+.++..++.+ +..+-|..|. ...++++.++
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde---~~~~~~~~~V 72 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDE---LEEVAKEFNV 72 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEeccc---CHhHHHhcCc
Confidence 57888888999999999999999998887754 8888888886 5566666553
No 114
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=96.85 E-value=0.001 Score=62.82 Aligned_cols=51 Identities=18% Similarity=0.211 Sum_probs=41.9
Q ss_pred CccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcC--CEEEEEeCCCHH
Q 025522 92 DLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG--VALVLIGPGSVE 142 (251)
Q Consensus 92 ~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~g--v~vVaVs~~~~~ 142 (251)
++.++++.++++|++.||+.|+...+.+.+....+++.+ +.++.|.++...
T Consensus 13 ~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~ 65 (462)
T TIGR01130 13 DFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEK 65 (462)
T ss_pred HHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcH
Confidence 334556778899999999999999999999988888776 888888887653
No 115
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=96.85 E-value=0.0026 Score=56.05 Aligned_cols=59 Identities=12% Similarity=0.095 Sum_probs=41.0
Q ss_pred cEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHh---CCce-EEEcC
Q 025522 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQT---KFKG-VYADP 160 (251)
Q Consensus 98 ~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~---~~pf-l~sDp 160 (251)
+.+++.|++.||++|+...+.+.+..++++. .+.+..|..+... ..++++ ++|- ++.+.
T Consensus 53 ~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~~~~---~l~~~~~I~~~PTl~~f~~ 115 (224)
T PTZ00443 53 GPWFVKFYAPWCSHCRKMAPAWERLAKALKG-QVNVADLDATRAL---NLAKRFAIKGYPTLLLFDK 115 (224)
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCcccH---HHHHHcCCCcCCEEEEEEC
Confidence 4567778899999999999999999888753 3666666655433 334444 5665 55553
No 116
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=96.83 E-value=0.0031 Score=51.87 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=37.8
Q ss_pred CCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHH
Q 025522 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQAR 145 (251)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~ 145 (251)
+.++||+.|.+.||++|+...+-|.++.+++... +.++-|-.|....+.
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVDe~~dla 70 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF-AVIYLVDITEVPDFN 70 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECCCCHHHH
Confidence 3567888888999999999999999988876432 777888887654333
No 117
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=96.77 E-value=0.0029 Score=49.53 Aligned_cols=72 Identities=7% Similarity=-0.003 Sum_probs=47.9
Q ss_pred CCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce-EEEcCChhHHHHcC
Q 025522 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG-VYADPNHSSYEALS 169 (251)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf-l~sDp~~~ly~alG 169 (251)
....+|+.|.+.||+.|+...+.|.++.+++ .++.++-|..+....+.+=..-..+|- ++......+.+..|
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~--~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~G~~v~~~~g 93 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKH--LETKFIKVNAEKAPFLVEKLNIKVLPTVILFKNGKTVDRIVG 93 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHc--CCCEEEEEEcccCHHHHHHCCCccCCEEEEEECCEEEEEEEC
Confidence 3456777888999999999999999987765 357888888776543333223335666 55554444443333
No 118
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=96.75 E-value=0.004 Score=60.41 Aligned_cols=46 Identities=13% Similarity=0.176 Sum_probs=40.3
Q ss_pred CCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCH
Q 025522 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (251)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~ 141 (251)
.++++|+.|++.||++|+...+.|.++..+++..++.++.|..+..
T Consensus 370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~ 415 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGD 415 (463)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCC
Confidence 4567888899999999999999999999998877899999988754
No 119
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=96.70 E-value=0.0042 Score=44.65 Aligned_cols=41 Identities=12% Similarity=0.137 Sum_probs=32.7
Q ss_pred EEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCH
Q 025522 100 VVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (251)
Q Consensus 100 VLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~ 141 (251)
.|..|...||++|+...+.|.++..++.. .+.++-|..+..
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~~~ 42 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVMEN 42 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCccC
Confidence 46677899999999999999998887743 377788877543
No 120
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=96.68 E-value=0.0023 Score=49.67 Aligned_cols=42 Identities=17% Similarity=0.108 Sum_probs=34.0
Q ss_pred cEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCH
Q 025522 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (251)
Q Consensus 98 ~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~ 141 (251)
+.+|+.|++.||+.|+...+.|.++..++. ++.++-|..+..
T Consensus 25 ~~vvv~F~a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~~~ 66 (113)
T cd02957 25 TRVVVHFYEPGFPRCKILDSHLEELAAKYP--ETKFVKINAEKA 66 (113)
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEchhh
Confidence 677888889999999999999998887763 577777776644
No 121
>PLN02309 5'-adenylylsulfate reductase
Probab=96.61 E-value=0.0049 Score=59.77 Aligned_cols=64 Identities=11% Similarity=0.157 Sum_probs=47.1
Q ss_pred CCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCC-CHHH-HHHHHHHhCCce-EEEc
Q 025522 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG-SVEQ-ARTFSEQTKFKG-VYAD 159 (251)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~-~~~~-~~~f~~~~~~pf-l~sD 159 (251)
.++.+|++|.+.||++|+...+.+.++.+++...++.++.|..+ +... ..+...-.++|- ++..
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PTil~f~ 430 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILLFP 430 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceeeEEEEEe
Confidence 45678888889999999999999999999988788999999988 4322 222122335665 4443
No 122
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=96.56 E-value=0.0097 Score=53.36 Aligned_cols=74 Identities=18% Similarity=0.324 Sum_probs=60.2
Q ss_pred CCcEEecCCCCeEeCCCccCCCcEEEEEEccCCCh-hhHHHHHHHHHcHHHHHHc-CCE--EEEEeCCC----HHHHHHH
Q 025522 76 DTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCV-LCRKRADYLAAKKDVMDAS-GVA--LVLIGPGS----VEQARTF 147 (251)
Q Consensus 76 p~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp-~C~~el~~L~~~~~~~~~~-gv~--vVaVs~~~----~~~~~~f 147 (251)
-.|+|.|.+|+.++=.++ .++-+|+.|-.++|| .|-+|+..|....+++++. |+. -|+|++|. ++.+++|
T Consensus 120 GpF~L~d~~Gk~~te~df--~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY 197 (280)
T KOG2792|consen 120 GPFSLVDHDGKRVTEKDF--LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEY 197 (280)
T ss_pred CceEEEecCCCeeccccc--ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHH
Confidence 569999999999999999 456677777889999 6999999999999988755 333 47888774 5788888
Q ss_pred HHHh
Q 025522 148 SEQT 151 (251)
Q Consensus 148 ~~~~ 151 (251)
+++.
T Consensus 198 ~~eF 201 (280)
T KOG2792|consen 198 VSEF 201 (280)
T ss_pred HHhc
Confidence 8774
No 123
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=96.55 E-value=0.0074 Score=48.37 Aligned_cols=69 Identities=9% Similarity=0.185 Sum_probs=42.5
Q ss_pred CCcEEEEEEccCCChhhHHHHHHHHH---cHHHHHHcCCEEEEEeCCCH-HHHHHHHH-------HhCCce-EEEcCChh
Q 025522 96 DRKAVVAFARHFGCVLCRKRADYLAA---KKDVMDASGVALVLIGPGSV-EQARTFSE-------QTKFKG-VYADPNHS 163 (251)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~---~~~~~~~~gv~vVaVs~~~~-~~~~~f~~-------~~~~pf-l~sDp~~~ 163 (251)
+++.|+++|-+.||+.|+..-...-. ..+.+ ..+..+|-|-.+.. +..+.+.+ ..++|. ++.|++.+
T Consensus 14 ~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l-~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~ 92 (124)
T cd02955 14 EDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAIL-NENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLK 92 (124)
T ss_pred cCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHH-hCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCC
Confidence 45667777889999999977654322 23333 34566666665443 22222322 348999 99999865
Q ss_pred HH
Q 025522 164 SY 165 (251)
Q Consensus 164 ly 165 (251)
..
T Consensus 93 ~~ 94 (124)
T cd02955 93 PF 94 (124)
T ss_pred EE
Confidence 43
No 124
>PTZ00102 disulphide isomerase; Provisional
Probab=96.52 E-value=0.0035 Score=59.93 Aligned_cols=68 Identities=13% Similarity=0.187 Sum_probs=47.4
Q ss_pred CCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcC-CEEEEEeCCCHHHH-HHHHHHhCCce-EEEcCChh
Q 025522 95 KDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG-VALVLIGPGSVEQA-RTFSEQTKFKG-VYADPNHS 163 (251)
Q Consensus 95 ~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~g-v~vVaVs~~~~~~~-~~f~~~~~~pf-l~sDp~~~ 163 (251)
+.++.+|++|++.||+.|+...+.+.+....+++.+ +.++.|..+..+.. ..|- -.++|- ++.+.+..
T Consensus 373 ~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~-v~~~Pt~~~~~~~~~ 443 (477)
T PTZ00102 373 KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFS-WSAFPTILFVKAGER 443 (477)
T ss_pred cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCC-CcccCeEEEEECCCc
Confidence 446778888889999999999999999888876543 55666666544332 2332 336787 66666654
No 125
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=96.48 E-value=0.0065 Score=48.48 Aligned_cols=64 Identities=8% Similarity=0.106 Sum_probs=41.1
Q ss_pred CCcEEEEEEccCCChh--hH--HHHHHHHHc-HHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce--EEEc
Q 025522 96 DRKAVVAFARHFGCVL--CR--KRADYLAAK-KDVMDASGVALVLIGPGSVEQARTFSEQTKFKG--VYAD 159 (251)
Q Consensus 96 ~~~vVLvF~R~~~Cp~--C~--~el~~L~~~-~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf--l~sD 159 (251)
...+||+||++.||++ |+ ...+.|.+. .+.+++.++.++-|-.+....+.+=..-.++|- ++-|
T Consensus 26 ~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~iPTl~lfk~ 96 (120)
T cd03065 26 YDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEEDSIYVFKD 96 (120)
T ss_pred CCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCccccEEEEEEC
Confidence 4568999999999987 99 444455555 444556678888888886533332222235665 4443
No 126
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=96.47 E-value=0.062 Score=44.94 Aligned_cols=138 Identities=17% Similarity=0.120 Sum_probs=77.6
Q ss_pred cccCCCCCcEEecC-----CCCeEeCCCccC---CCcEEEEEEccCCChhhHHHHHHHHHc-H-HHHHHcCCEEEEEeCC
Q 025522 70 DTKNLLDTVKVYDV-----NGNAIPISDLWK---DRKAVVAFARHFGCVLCRKRADYLAAK-K-DVMDASGVALVLIGPG 139 (251)
Q Consensus 70 ~~g~~ap~f~l~d~-----~G~~v~ls~l~~---~~~vVLvF~R~~~Cp~C~~el~~L~~~-~-~~~~~~gv~vVaVs~~ 139 (251)
..|+.+|.+++.|. +|..++....-. .+||.|+++= ++-+--.+.=..|.+. . ..|.....+...|-.-
T Consensus 2 ~~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GKVrviq~i-AGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~ 80 (160)
T PF09695_consen 2 TLGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGKVRVIQHI-AGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINL 80 (160)
T ss_pred cCCCcCCceEecCCceEEEcCCcccccccCccccCCCEEEEEEe-ccCCchhHhhHHHHHHHHHcCCCccceeEEEEEec
Confidence 46788888888653 445555443211 3678777762 2222222222222221 1 1133344555555432
Q ss_pred -C-----HHHHHHHHHHhC--Cce--EEEcCChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCC
Q 025522 140 -S-----VEQARTFSEQTK--FKG--VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSR 209 (251)
Q Consensus 140 -~-----~~~~~~f~~~~~--~pf--l~sDp~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g 209 (251)
+ ...++..+++.+ +|. ++.|.+..+-+++++....
T Consensus 81 dDAi~gt~~fVrss~e~~kk~~p~s~~vlD~~G~~~~aW~L~~~~----------------------------------- 125 (160)
T PF09695_consen 81 DDAIWGTGGFVRSSAEDSKKEFPWSQFVLDSNGVVRKAWQLQEES----------------------------------- 125 (160)
T ss_pred ccccccchHHHHHHHHHhhhhCCCcEEEEcCCCceeccccCCCCC-----------------------------------
Confidence 2 235555555443 666 8899887655555544321
Q ss_pred CccccceEEEEcCCCCeEEEEEeCCCCCCCCCHHHHHHHhhC
Q 025522 210 GGWQQGGIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACCS 251 (251)
Q Consensus 210 ~~~q~gg~fVid~ggg~I~~~h~~~~~~D~~~~~eIL~al~~ 251 (251)
-+.+|+|++ |+|.|.+-+ .-...+++++++.+++
T Consensus 126 -----SaiiVlDK~-G~V~F~k~G--~Ls~~Ev~qVi~Ll~~ 159 (160)
T PF09695_consen 126 -----SAIIVLDKQ-GKVQFVKEG--ALSPAEVQQVIALLKK 159 (160)
T ss_pred -----ceEEEEcCC-ccEEEEECC--CCCHHHHHHHHHHHhc
Confidence 157899998 699999887 3445567777877753
No 127
>PTZ00102 disulphide isomerase; Provisional
Probab=96.38 E-value=0.0048 Score=59.03 Aligned_cols=70 Identities=9% Similarity=0.160 Sum_probs=46.8
Q ss_pred CccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcC--CEEEEEeCCCHHHH-HHHHHHhCCce-EEEcCCh
Q 025522 92 DLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG--VALVLIGPGSVEQA-RTFSEQTKFKG-VYADPNH 162 (251)
Q Consensus 92 ~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~g--v~vVaVs~~~~~~~-~~f~~~~~~pf-l~sDp~~ 162 (251)
+..++++.+|++|++.||++|+...+.+.+....++..+ +.+.-|.++....+ ++| .-.++|- ++.+.+.
T Consensus 44 ~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~-~i~~~Pt~~~~~~g~ 117 (477)
T PTZ00102 44 KFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEF-GVRGYPTIKFFNKGN 117 (477)
T ss_pred HHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhc-CCCcccEEEEEECCc
Confidence 334556788889999999999999999999888887654 66666666554322 222 2235665 4444443
No 128
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=96.25 E-value=0.0079 Score=45.10 Aligned_cols=43 Identities=5% Similarity=0.071 Sum_probs=33.4
Q ss_pred cEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCH
Q 025522 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (251)
Q Consensus 98 ~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~ 141 (251)
..++++|...||+.|....+.|.+...+++.. +.++.|..+..
T Consensus 13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~~~~ 55 (103)
T cd02982 13 KPLLVLFYNKDDSESEELRERFKEVAKKFKGK-LLFVVVDADDF 55 (103)
T ss_pred CCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe-EEEEEEchHhh
Confidence 44566667999999999999999999998733 66666666653
No 129
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=96.23 E-value=0.013 Score=58.35 Aligned_cols=67 Identities=12% Similarity=0.185 Sum_probs=44.6
Q ss_pred CCcEEEEEEccCCChhhHHHHHHH---HHcHHHHHHcCCEEEEEeCCCH-HHHHHHHHHhC---Cce-EEEcCChhH
Q 025522 96 DRKAVVAFARHFGCVLCRKRADYL---AAKKDVMDASGVALVLIGPGSV-EQARTFSEQTK---FKG-VYADPNHSS 164 (251)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L---~~~~~~~~~~gv~vVaVs~~~~-~~~~~f~~~~~---~pf-l~sDp~~~l 164 (251)
+++.|++.|++.||+.|+..-+.. .+..++++ ++.++-|..++. +..+++.++++ +|. ++.|++.+.
T Consensus 473 ~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~ 547 (571)
T PRK00293 473 KGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQE 547 (571)
T ss_pred cCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCC
Confidence 356788888899999999876553 33444443 577777776543 34455666654 677 888887654
No 130
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=96.02 E-value=0.01 Score=46.81 Aligned_cols=59 Identities=7% Similarity=-0.085 Sum_probs=37.7
Q ss_pred CCcEEEEEEccCC--ChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce
Q 025522 96 DRKAVVAFARHFG--CVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG 155 (251)
Q Consensus 96 ~~~vVLvF~R~~~--Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf 155 (251)
.+..+|++|.+.| ||.|+...+.|.++.+++... +.++-|..+....+..-..-.++|-
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid~~~~la~~f~V~sIPT 86 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRADEQALAARFGVLRTPA 86 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECCCCHHHHHHcCCCcCCE
Confidence 3344555666665 999999999999988877433 5666666665543333333335554
No 131
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.011 Score=49.03 Aligned_cols=44 Identities=14% Similarity=0.053 Sum_probs=33.7
Q ss_pred CcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCH
Q 025522 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (251)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~ 141 (251)
...||+-|++.||.+|+.-.+.|+++..++ +--++++-|-.|+.
T Consensus 61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~-~g~~k~~kvdtD~~ 104 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGPCKMLGPILEELVSEY-AGKFKLYKVDTDEH 104 (150)
T ss_pred CCCEEEEEecCcCccHhHhhHHHHHHHHhh-cCeEEEEEEccccc
Confidence 455777778999999999999999998876 33366666666554
No 132
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=95.86 E-value=0.2 Score=44.93 Aligned_cols=73 Identities=15% Similarity=0.136 Sum_probs=50.5
Q ss_pred ccccCCCCCcEEecCCCCeEeCCCccCCCc-EEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCH
Q 025522 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRK-AVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (251)
Q Consensus 69 ~~~g~~ap~f~l~d~~G~~v~ls~l~~~~~-vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~ 141 (251)
.+.....|++.-.+.+|+.+.+.+.++++. +|.+|++..+=..+..+...+.+.+..-....+++|-|+..+.
T Consensus 95 ~~kAlyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~p~~~~~~~~~~~~~q~v~In~~e~ 168 (252)
T PF05176_consen 95 ADKALYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTSPFLEDFLQEPYGRVQIVEINLIEN 168 (252)
T ss_pred HHhCCcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHHhhHHHHHHhhCCCCceEEEEEecchH
Confidence 345567999999999999999999987764 5777777666666666665333322221112799999998754
No 133
>PF13728 TraF: F plasmid transfer operon protein
Probab=95.69 E-value=0.034 Score=48.66 Aligned_cols=46 Identities=20% Similarity=0.423 Sum_probs=36.5
Q ss_pred CCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCC
Q 025522 90 ISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (251)
Q Consensus 90 ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~ 140 (251)
+.++ .++--+++|||+ .|++|+.+.+-|+....+ .|+.|++||.|.
T Consensus 115 l~~l-a~~~gL~~F~~~-~C~~C~~~~pil~~~~~~---yg~~v~~vs~DG 160 (215)
T PF13728_consen 115 LKQL-AQKYGLFFFYRS-DCPYCQQQAPILQQFADK---YGFSVIPVSLDG 160 (215)
T ss_pred HHHH-hhCeEEEEEEcC-CCchhHHHHHHHHHHHHH---hCCEEEEEecCC
Confidence 3444 345567777776 899999999999988776 499999999985
No 134
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.026 Score=51.61 Aligned_cols=58 Identities=9% Similarity=-0.027 Sum_probs=41.1
Q ss_pred CcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce
Q 025522 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG 155 (251)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf 155 (251)
...|||.||+.||++|+.-.+.|.++..+.+ -.+.++-|.+|....+..-..-..+|-
T Consensus 43 ~~PVlV~fWap~~~~c~qL~p~Lekla~~~~-G~f~LakvN~D~~p~vAaqfgiqsIPt 100 (304)
T COG3118 43 EVPVLVDFWAPWCGPCKQLTPTLEKLAAEYK-GKFKLAKVNCDAEPMVAAQFGVQSIPT 100 (304)
T ss_pred CCCeEEEecCCCCchHHHHHHHHHHHHHHhC-CceEEEEecCCcchhHHHHhCcCcCCe
Confidence 3467888999999999999999999887653 236777777776644443223335665
No 135
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=95.50 E-value=0.032 Score=38.73 Aligned_cols=39 Identities=8% Similarity=0.167 Sum_probs=27.4
Q ss_pred EEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCH
Q 025522 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (251)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~ 141 (251)
|..|...|||+|....+.|.++..+ ..++.+.-|-.++.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~--~~~i~~~~id~~~~ 41 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAAL--NPNISAEMIDAAEF 41 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHh--CCceEEEEEEcccC
Confidence 4566789999998888887776443 24577777765543
No 136
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=95.46 E-value=0.038 Score=46.75 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=41.3
Q ss_pred cEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce--EEEc
Q 025522 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG--VYAD 159 (251)
Q Consensus 98 ~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf--l~sD 159 (251)
..||+.|++.||+.|+.-.+.|.++..++. ++.++=|..+..+-+..| .-..+|- +|-|
T Consensus 84 ~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~~~l~~~f-~v~~vPTlllyk~ 144 (175)
T cd02987 84 TTVVVHIYEPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASATGASDEF-DTDALPALLVYKG 144 (175)
T ss_pred cEEEEEEECCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccchhhHHhC-CCCCCCEEEEEEC
Confidence 378888889999999998888888877763 578888877754222223 2235775 5554
No 137
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=95.40 E-value=0.15 Score=45.24 Aligned_cols=79 Identities=13% Similarity=0.247 Sum_probs=49.7
Q ss_pred CCCCcEEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcC---CEEEEEeCCCH-HHHHHHHH
Q 025522 74 LLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG---VALVLIGPGSV-EQARTFSE 149 (251)
Q Consensus 74 ~ap~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~g---v~vVaVs~~~~-~~~~~f~~ 149 (251)
..|.+++.+.+ .+.+. .+.|+||-+=.++|.+|..++..|..+..+|++.| |..++|..... ..+...--
T Consensus 9 ~~p~W~i~~~~----pm~~~--~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l 82 (238)
T PF04592_consen 9 PPPPWKIGGQD----PMLNS--LGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWEL 82 (238)
T ss_pred CCCCceECCch----Hhhhc--CCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHH
Confidence 45666654432 34443 24554444445599999999999999999999876 56778887654 33332222
Q ss_pred HhCCc--e-EEE
Q 025522 150 QTKFK--G-VYA 158 (251)
Q Consensus 150 ~~~~p--f-l~s 158 (251)
+...+ | ||-
T Consensus 83 ~~r~~~~ipVyq 94 (238)
T PF04592_consen 83 KRRVSEHIPVYQ 94 (238)
T ss_pred HHhCCCCCceec
Confidence 22444 6 775
No 138
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=95.38 E-value=0.024 Score=53.55 Aligned_cols=64 Identities=13% Similarity=0.140 Sum_probs=47.4
Q ss_pred CCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHc--CCEEEEEeCCCHHHHHHHHHHhCCce-EEEcCC
Q 025522 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS--GVALVLIGPGSVEQARTFSEQTKFKG-VYADPN 161 (251)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~--gv~vVaVs~~~~~~~~~f~~~~~~pf-l~sDp~ 161 (251)
.++.+|++|++.||+.|+...+.+.++..++... ++.++.|.++..+... ..-.++|- ++.+.+
T Consensus 363 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~~~--~~i~~~Pt~~~~~~~ 429 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDVPP--FEVEGFPTIKFVPAG 429 (462)
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCccCC--CCccccCEEEEEeCC
Confidence 4677888999999999999999999999988763 6888888887543222 23346676 555444
No 139
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=95.35 E-value=0.11 Score=35.82 Aligned_cols=47 Identities=19% Similarity=0.255 Sum_probs=33.7
Q ss_pred EEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCH-HHHHHHHHHhCCc
Q 025522 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTKFK 154 (251)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~-~~~~~f~~~~~~p 154 (251)
+.+|...|||+|+.....|. +.|+.+..+..++. +..+++.+.++..
T Consensus 2 i~lf~~~~C~~C~~~~~~l~-------~~~i~~~~vdi~~~~~~~~~~~~~~~~~ 49 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLT-------SKGIAFEEIDVEKDSAAREEVLKVLGQR 49 (74)
T ss_pred EEEEcCCCChhHHHHHHHHH-------HCCCeEEEEeccCCHHHHHHHHHHhCCC
Confidence 56788999999998766654 45788888877643 4456677776644
No 140
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=94.90 E-value=0.021 Score=46.34 Aligned_cols=70 Identities=9% Similarity=0.165 Sum_probs=42.0
Q ss_pred CCcEEEEEEccCCChhhHHHHHHHHHcH--HHHHHcCCEEEEEeCCCHH-HHHHHHHHhCCce-EEEcCChhHHHH
Q 025522 96 DRKAVVAFARHFGCVLCRKRADYLAAKK--DVMDASGVALVLIGPGSVE-QARTFSEQTKFKG-VYADPNHSSYEA 167 (251)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~--~~~~~~gv~vVaVs~~~~~-~~~~f~~~~~~pf-l~sDp~~~ly~a 167 (251)
.++.|+++|-..||+.|+.--...-+.. .++.+.+.-+|-+-.+..+ .... ...++|. ++.|++.++-..
T Consensus 22 ~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~--~g~~vPtivFld~~g~vi~~ 95 (130)
T cd02960 22 SNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSP--DGQYVPRIMFVDPSLTVRAD 95 (130)
T ss_pred CCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCc--cCcccCeEEEECCCCCCccc
Confidence 3566777788999999999888765543 2222334433334333221 1111 2357888 999999765443
No 141
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=94.76 E-value=0.094 Score=36.88 Aligned_cols=41 Identities=17% Similarity=0.121 Sum_probs=25.9
Q ss_pred EEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHH
Q 025522 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS 148 (251)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~ 148 (251)
+..|...|||+|++....|.+ .|+..-.|..+......++.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~-------~~~~~~~idi~~~~~~~~~~ 42 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDK-------LGAAYEWVDIEEDEGAADRV 42 (77)
T ss_pred EEEEECCCChhHHHHHHHHHH-------cCCceEEEeCcCCHhHHHHH
Confidence 456778999999997776644 45555555555443344443
No 142
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=94.75 E-value=0.079 Score=47.71 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=34.5
Q ss_pred CCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCH
Q 025522 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (251)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~ 141 (251)
++.-+++||| ..||+|+..++-|+....+ -|+.|++||.|..
T Consensus 150 ~~~gL~fFy~-~~C~~C~~~apil~~fa~~---ygi~v~~VS~DG~ 191 (256)
T TIGR02739 150 QSYGLFFFYR-GKSPISQKMAPVIQAFAKE---YGISVIPISVDGT 191 (256)
T ss_pred hceeEEEEEC-CCCchhHHHHHHHHHHHHH---hCCeEEEEecCCC
Confidence 3466888887 6799999999999887765 5899999999854
No 143
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=94.71 E-value=0.079 Score=38.32 Aligned_cols=40 Identities=10% Similarity=0.203 Sum_probs=27.8
Q ss_pred EEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHH
Q 025522 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQA 144 (251)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~ 144 (251)
+.|.+.|||.|+.-.+.+.+..+++ |..+-.+-.++.+.+
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~---~~~~~~~~v~~~~~a 42 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEEL---GIDAEFEKVTDMNEI 42 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHc---CCCeEEEEeCCHHHH
Confidence 3345799999999999998887764 444555555555443
No 144
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=94.65 E-value=0.2 Score=42.07 Aligned_cols=90 Identities=19% Similarity=0.235 Sum_probs=55.3
Q ss_pred cCCCCCcEEec-CCCCeEeCCCccC--CCcEEEEEEccCCChhhHHHHHHHHHcHHHHH-------------HcCCEEEE
Q 025522 72 KNLLDTVKVYD-VNGNAIPISDLWK--DRKAVVAFARHFGCVLCRKRADYLAAKKDVMD-------------ASGVALVL 135 (251)
Q Consensus 72 g~~ap~f~l~d-~~G~~v~ls~l~~--~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~-------------~~gv~vVa 135 (251)
|..+|++.+.. .||+++.|.+... ++.-|++|--..-++..+..+..|.+..+... ..=+.+++
T Consensus 1 G~R~~~a~V~r~aD~~p~~L~~~~~adGrfrI~vFagd~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (167)
T cd02979 1 GRRFPSAPVVRQADALPVHLGHRLPADGRFRIYVFAGDIAPAQQKSRLTQLCDALDSPDSFPLRYTPRGADPDSVFDVVT 80 (167)
T ss_pred CCcCCCceEEEecCCCCHhHhhhccCCCCEEEEEEcCCCCchhHHHHHHHHHHHHcCCcchHhhcCCCCCCCCCcEEEEE
Confidence 56788888877 5899999988764 35668888665566666666666665432111 12267888
Q ss_pred EeCCCHHH---------HHHHHHHhCCce--EEEcCC
Q 025522 136 IGPGSVEQ---------ARTFSEQTKFKG--VYADPN 161 (251)
Q Consensus 136 Vs~~~~~~---------~~~f~~~~~~pf--l~sDp~ 161 (251)
|....... .+.+.+..++.+ +|+|.+
T Consensus 81 I~~~~~~~~e~~dlP~~~~p~~~~~~~~~~~v~~d~~ 117 (167)
T cd02979 81 IHAAPRREIELLDLPAVLRPFGEKKGWDYEKIYADDD 117 (167)
T ss_pred EecCCccccchhhCcHhhcCCCCccccceeeEEecCc
Confidence 88775421 222223335555 788744
No 145
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=94.40 E-value=0.082 Score=45.77 Aligned_cols=43 Identities=21% Similarity=0.412 Sum_probs=30.1
Q ss_pred CCCcEEEEEEc--cCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCC
Q 025522 95 KDRKAVVAFAR--HFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (251)
Q Consensus 95 ~~~~vVLvF~R--~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~ 139 (251)
+.+..+++|+- +.||++|+...+-|.++.+++. ++++..|..+
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~--~~~i~~v~vd 62 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP--KLKLEIYDFD 62 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC--CceEEEEecC
Confidence 33445555554 4999999999999988877763 4555566655
No 146
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=94.37 E-value=0.1 Score=40.34 Aligned_cols=65 Identities=14% Similarity=0.156 Sum_probs=42.9
Q ss_pred CCcEEEEEEccCCChhhHHHHHHHHHc---HHHHHHcCCEEEEEeCCCHHHHHHHHHHh---CCce-EEEcC-Ch
Q 025522 96 DRKAVVAFARHFGCVLCRKRADYLAAK---KDVMDASGVALVLIGPGSVEQARTFSEQT---KFKG-VYADP-NH 162 (251)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~---~~~~~~~gv~vVaVs~~~~~~~~~f~~~~---~~pf-l~sDp-~~ 162 (251)
+++.|++++-+.||+.|+......-.. .+.+. ...-.+.+..++++ ..+|++.+ ++|. ++.|+ +.
T Consensus 16 ~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~-~~~v~~~~d~~~~e-~~~~~~~~~~~~~P~~~~i~~~~g 88 (114)
T cd02958 16 EKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIR-ENFIFWQCDIDSSE-GQRFLQSYKVDKYPHIAIIDPRTG 88 (114)
T ss_pred hCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHH-hCEEEEEecCCCcc-HHHHHHHhCccCCCeEEEEeCccC
Confidence 468899999999999999877654332 33333 35555556555533 34555544 6888 99998 44
No 147
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=94.30 E-value=0.079 Score=47.48 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=36.1
Q ss_pred CCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCC
Q 025522 90 ISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (251)
Q Consensus 90 ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~ 140 (251)
+.++ .+..-|++||| ..||+|+.+++-|+...++ .|+.|++||.|.
T Consensus 138 i~~l-a~~~GL~fFy~-s~Cp~C~~~aPil~~fa~~---yg~~v~~VS~DG 183 (248)
T PRK13703 138 IAKL-AEHYGLMFFYR-GQDPIDGQLAQVINDFRDT---YGLSVIPVSVDG 183 (248)
T ss_pred HHHH-HhcceEEEEEC-CCCchhHHHHHHHHHHHHH---hCCeEEEEecCC
Confidence 3444 23466888887 6799999999999887765 589999999875
No 148
>smart00594 UAS UAS domain.
Probab=94.16 E-value=0.18 Score=39.77 Aligned_cols=65 Identities=11% Similarity=0.111 Sum_probs=45.5
Q ss_pred CCcEEEEEEccCCChhhHHHHHHHHHc---HHHHHHcCCEEEEEeCCCHHHHHHHHHHh---CCce-EEEcCCh
Q 025522 96 DRKAVVAFARHFGCVLCRKRADYLAAK---KDVMDASGVALVLIGPGSVEQARTFSEQT---KFKG-VYADPNH 162 (251)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~---~~~~~~~gv~vVaVs~~~~~~~~~f~~~~---~~pf-l~sDp~~ 162 (251)
++|.+++++-..||+.|+..-.++-.. .+.+ +.+.-++.+...+.+. .++++++ ++|+ ++.|++.
T Consensus 26 ~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i-~~~fv~~~~dv~~~eg-~~l~~~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 26 QRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLI-RENFIFWQVDVDTSEG-QRVSQFYKLDSFPYVAIVDPRT 97 (122)
T ss_pred hcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHH-HcCEEEEEecCCChhH-HHHHHhcCcCCCCEEEEEecCC
Confidence 467899999999999999998875443 3333 4456666666666543 4555554 6888 8888875
No 149
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=94.14 E-value=0.15 Score=40.68 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=32.4
Q ss_pred CCcEEEEEE------ccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHH
Q 025522 96 DRKAVVAFA------RHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (251)
Q Consensus 96 ~~~vVLvF~------R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~ 142 (251)
++++.|+|+ -.+|||.|+.--+-+.+.... ...+..+|-|..++..
T Consensus 19 ~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~-~~~~~~lv~v~VG~r~ 70 (119)
T PF06110_consen 19 GKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKK-APENARLVYVEVGDRP 70 (119)
T ss_dssp TSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH--STTEEEEEEE---HH
T ss_pred CCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHh-CCCCceEEEEEcCCHH
Confidence 356777777 336999999999999997766 3458888888888763
No 150
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=94.12 E-value=0.16 Score=43.94 Aligned_cols=44 Identities=9% Similarity=-0.004 Sum_probs=29.3
Q ss_pred CCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCH
Q 025522 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (251)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~ 141 (251)
++|++|+.|...||++|..-.+.+.++..+ .-.+.+.-|-.+..
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~--~~~i~~~~vD~~~~ 175 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALA--NDKILGEMIEANEN 175 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHh--cCceEEEEEeCCCC
Confidence 568888889999999999766655554433 22455555665543
No 151
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=94.08 E-value=0.04 Score=46.34 Aligned_cols=108 Identities=20% Similarity=0.233 Sum_probs=66.8
Q ss_pred CCCccccCCCCCcEEec-CCCCeEeCCCccC--CCcEEEEEEccCCChhhHHHHHHHHHcHH-------HHHHc------
Q 025522 66 SVSEDTKNLLDTVKVYD-VNGNAIPISDLWK--DRKAVVAFARHFGCVLCRKRADYLAAKKD-------VMDAS------ 129 (251)
Q Consensus 66 ~~~~~~g~~ap~f~l~d-~~G~~v~ls~l~~--~~~vVLvF~R~~~Cp~C~~el~~L~~~~~-------~~~~~------ 129 (251)
.....+|..+|+..+.. .||+++.|.+.+. ++.-|++|--..-.+-+...+..|.+..+ .|...
T Consensus 27 a~~l~~G~Rlp~~~v~r~aD~~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~~s 106 (169)
T PF07976_consen 27 AGGLRPGRRLPSAKVVRHADGNPVHLQDDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDPDS 106 (169)
T ss_dssp BTTS-TTCB----EEEETTTTEEEEGGGG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-TTS
T ss_pred ccCcCCccccCCceEEEEcCCCChhHhhhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCCCC
Confidence 35578999999999976 6999999998764 36779999877777777766666666442 33322
Q ss_pred CCEEEEEeCCCH---------HHHHHHHHHhCCce--EEEcC------ChhHHHHcCCccc
Q 025522 130 GVALVLIGPGSV---------EQARTFSEQTKFKG--VYADP------NHSSYEALSFVSG 173 (251)
Q Consensus 130 gv~vVaVs~~~~---------~~~~~f~~~~~~pf--l~sDp------~~~ly~alGl~~~ 173 (251)
-++++.|.+... +.++.|.+++++.+ ||+|- ...+|+.||+...
T Consensus 107 ~~~~~~I~~~~~~~~e~~dlP~~~~p~~~~~~~~~~~vy~Dd~~~~~~~g~~y~~~Gid~~ 167 (169)
T PF07976_consen 107 VFDVLLIHSSPRDEVELFDLPEIFRPFDGKRGWDYWKVYVDDESYHSGHGDAYEKYGIDRD 167 (169)
T ss_dssp SEEEEEEESS-CCCS-GGGS-CCCS-EETTTTC--SSEEE-S-SSSSTT--HHHHCTBBTT
T ss_pred eeEEEEEecCCCCceeHHHCcHhhCcccCCCCccceeEEecCcccccCcccHHHhhCCCcC
Confidence 288999998743 23444555566666 99995 4789999997653
No 152
>PTZ00062 glutaredoxin; Provisional
Probab=93.94 E-value=0.098 Score=45.52 Aligned_cols=51 Identities=6% Similarity=0.072 Sum_probs=38.4
Q ss_pred cEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce-EEE
Q 025522 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG-VYA 158 (251)
Q Consensus 98 ~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf-l~s 158 (251)
..+|+||++.|||.|+...+-|.++.+++ ..+..+-|..+ .+-..+|+ ++.
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~--~~~~F~~V~~d--------~~V~~vPtfv~~ 69 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDF--PSLEFYVVNLA--------DANNEYGVFEFY 69 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHC--CCcEEEEEccc--------cCcccceEEEEE
Confidence 56789999999999999888888887776 35777777665 33446776 443
No 153
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=93.68 E-value=0.36 Score=48.67 Aligned_cols=104 Identities=11% Similarity=0.033 Sum_probs=62.3
Q ss_pred CCccccCCCCCcEEec-CCCCeEeCCCcc--CCCcEEEEEEccCCChhhHHHHHHHHHcHH--------HHHHcC-----
Q 025522 67 VSEDTKNLLDTVKVYD-VNGNAIPISDLW--KDRKAVVAFARHFGCVLCRKRADYLAAKKD--------VMDASG----- 130 (251)
Q Consensus 67 ~~~~~g~~ap~f~l~d-~~G~~v~ls~l~--~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~--------~~~~~g----- 130 (251)
.....|..+|++.+.. .+++++.|.+.+ .++..||+|--..-.+.....+..|.+... .+...+
T Consensus 461 ~~~~~G~r~~~~~v~~~~d~~~~~l~~~~~~~g~~~l~~f~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 540 (634)
T PRK08294 461 TGFPIGKRFHSAPVIRLADAKPVHLGHAATADGRWRIYAFADAADPAGPGSALDALCEFLAESPDSPLRRFTPSGADIDA 540 (634)
T ss_pred cCCCCceeCCCCceeeccCCCchhHhhhcccCCCEEEEEEcCCCCcchhHHHHHHHHHHHhhCccchHhhcCCCCCCCCc
Confidence 4577899999999887 588888887655 346778877655565677666666655431 122222
Q ss_pred -CEEEEEeCCCHH---------HHHHHHHHhCC-ce--EEEcC--ChhHHHHcCC
Q 025522 131 -VALVLIGPGSVE---------QARTFSEQTKF-KG--VYADP--NHSSYEALSF 170 (251)
Q Consensus 131 -v~vVaVs~~~~~---------~~~~f~~~~~~-pf--l~sDp--~~~ly~alGl 170 (251)
+.++.|...... ..+.|....++ .+ +|+|. ..+.|+.||+
T Consensus 541 ~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi 595 (634)
T PRK08294 541 VIDVRAIFQQPHRELDLEDVPALLLPRKGRFGLTDYEKVFCADLSGADIFDLRGI 595 (634)
T ss_pred EEEEEEEecCCCCccchhhCcHhhCCcccccCccchhheecCCCchhhHHHhhCC
Confidence 567777766432 22333344455 44 66662 1345555553
No 154
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=93.51 E-value=0.14 Score=38.34 Aligned_cols=53 Identities=9% Similarity=0.070 Sum_probs=36.8
Q ss_pred CCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCC
Q 025522 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (251)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~ 153 (251)
++|+-+.+|-+.||++|..-.+-+.++..+. -++++..|-.+.. .+.++++++
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~--~~i~~~~vd~~~~---~e~a~~~~V 63 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLN--PNIEHEMIDGALF---QDEVEERGI 63 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHC--CCceEEEEEhHhC---HHHHHHcCC
Confidence 6789888888999999998877776666543 2577777776543 233345444
No 155
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=93.28 E-value=0.17 Score=43.52 Aligned_cols=57 Identities=19% Similarity=0.205 Sum_probs=39.8
Q ss_pred cEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce--EEEc
Q 025522 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG--VYAD 159 (251)
Q Consensus 98 ~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf--l~sD 159 (251)
..||+.|.+.||+.|+...+.|.++..++. .++++-|..+. .+..|- ...+|. +|-|
T Consensus 103 ~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad~--~~~~~~-i~~lPTlliyk~ 161 (192)
T cd02988 103 TWVVVHLYKDGIPLCRLLNQHLSELARKFP--DTKFVKIISTQ--CIPNYP-DKNLPTILVYRN 161 (192)
T ss_pred CEEEEEEECCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhHH--hHhhCC-CCCCCEEEEEEC
Confidence 467778889999999999999999888763 57777776653 233332 235776 5554
No 156
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=93.12 E-value=0.26 Score=36.03 Aligned_cols=38 Identities=11% Similarity=0.198 Sum_probs=28.8
Q ss_pred EEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCC
Q 025522 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (251)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~ 140 (251)
|..|-..|||+|.+-...|.++..+. .|+....|..+.
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~--~~i~~~~idi~~ 40 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEER--DDFDYRYVDIHA 40 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccc--cCCcEEEEECCC
Confidence 45667899999999999999987654 466666666653
No 157
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=93.11 E-value=0.034 Score=44.78 Aligned_cols=65 Identities=11% Similarity=0.164 Sum_probs=40.2
Q ss_pred CCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCH-HHHHHHHH--HhCCce-EEEcCCh
Q 025522 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSE--QTKFKG-VYADPNH 162 (251)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~-~~~~~f~~--~~~~pf-l~sDp~~ 162 (251)
.++.-++.+-..|||.|+..++.|.+..+.- -++++=.|..|.. +...+|.. ...+|- |+.|.+.
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~--p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~ 108 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEAN--PNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDG 108 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH---TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT-
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhC--CCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCC
Confidence 3455566666999999999999999988853 3777777777643 55556655 335777 8888773
No 158
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=92.98 E-value=0.45 Score=33.95 Aligned_cols=56 Identities=16% Similarity=0.254 Sum_probs=35.4
Q ss_pred EEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCC-HHHHHHHH-HHhC---CceEEEcC
Q 025522 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-VEQARTFS-EQTK---FKGVYADP 160 (251)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~-~~~~~~f~-~~~~---~pfl~sDp 160 (251)
+.|-..|||+|++..+.|.++. +. ..+.++-|..++ .+..+++. +.++ +|.++.|.
T Consensus 2 ~~f~~~~Cp~C~~~~~~L~~~~--i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g 62 (84)
T TIGR02180 2 VVFSKSYCPYCKKAKEILAKLN--VK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFING 62 (84)
T ss_pred EEEECCCChhHHHHHHHHHHcC--CC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECC
Confidence 4566899999999999998865 11 136777777653 34444443 4434 34366553
No 159
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=92.87 E-value=0.26 Score=39.71 Aligned_cols=65 Identities=12% Similarity=0.242 Sum_probs=49.5
Q ss_pred EEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEe--CC--CHHHHHHHHHHhCCce-EEEcCChhHHHHcCCcc
Q 025522 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG--PG--SVEQARTFSEQTKFKG-VYADPNHSSYEALSFVS 172 (251)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs--~~--~~~~~~~f~~~~~~pf-l~sDp~~~ly~alGl~~ 172 (251)
+.+|-..+|+.|++....|. +.|+..-.|- .+ +.+.+.++.+..+.++ -+.......|+.+++..
T Consensus 2 i~iY~~~~C~~C~ka~~~L~-------~~gi~~~~idi~~~~~~~~eL~~~l~~~~~g~~~lin~~~~~~k~l~~~~ 71 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLE-------EHDIPFTERNIFSSPLTIDEIKQILRMTEDGTDEIISTRSKVFQKLNVDV 71 (131)
T ss_pred EEEEeCCCChHHHHHHHHHH-------HcCCCcEEeeccCChhhHHHHHHHHHHhcCCHHHHHhcCcHHHHhCCCCc
Confidence 56788999999999876664 4455544444 33 3478999999987777 66689999999998876
No 160
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=92.75 E-value=0.11 Score=50.94 Aligned_cols=62 Identities=10% Similarity=0.118 Sum_probs=46.1
Q ss_pred CCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHc--CCEEEEEeCCCHHHHHHHHHHhCCc
Q 025522 90 ISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS--GVALVLIGPGSVEQARTFSEQTKFK 154 (251)
Q Consensus 90 ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~--gv~vVaVs~~~~~~~~~f~~~~~~p 154 (251)
+.++..+...+++-|-+.||..|...++++.+....+.+. .+.+.=|-+.. . ..++.++.++
T Consensus 35 f~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~--~-~~~~~~y~v~ 98 (493)
T KOG0190|consen 35 FKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATE--E-SDLASKYEVR 98 (493)
T ss_pred HHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecch--h-hhhHhhhcCC
Confidence 4555556677777777999999999999999999999887 45555554433 2 6677776554
No 161
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=92.57 E-value=0.69 Score=31.37 Aligned_cols=52 Identities=23% Similarity=0.449 Sum_probs=34.4
Q ss_pred EEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHH-HHHHHHHHhC---CceEEEc
Q 025522 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE-QARTFSEQTK---FKGVYAD 159 (251)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~-~~~~f~~~~~---~pfl~sD 159 (251)
|+.|...|||+|......| ++.|+..-.+..++.+ ..+++.+..+ +|-++.|
T Consensus 1 V~vy~~~~C~~C~~~~~~L-------~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~ 56 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFL-------DEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFID 56 (60)
T ss_dssp EEEEESTTSHHHHHHHHHH-------HHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEET
T ss_pred cEEEEcCCCcCHHHHHHHH-------HHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEEC
Confidence 4567789999999877666 6678888888777653 3444444434 3335555
No 162
>PHA02125 thioredoxin-like protein
Probab=92.43 E-value=0.31 Score=34.90 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=17.4
Q ss_pred EEEEccCCChhhHHHHHHHHH
Q 025522 101 VAFARHFGCVLCRKRADYLAA 121 (251)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~ 121 (251)
|+.|.+.||+.|+.-.+.|.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~ 22 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLAN 22 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHH
Confidence 667889999999988887754
No 163
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=92.04 E-value=0.78 Score=33.14 Aligned_cols=52 Identities=23% Similarity=0.323 Sum_probs=34.0
Q ss_pred EEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCC-ce--EEEc
Q 025522 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF-KG--VYAD 159 (251)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~-pf--l~sD 159 (251)
|+.|-..|||+|++--..|. +.|+....|..+..+...++.+.++. ++ |+.|
T Consensus 10 V~ly~~~~Cp~C~~ak~~L~-------~~gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i~ 64 (79)
T TIGR02190 10 VVVFTKPGCPFCAKAKATLK-------EKGYDFEEIPLGNDARGRSLRAVTGATTVPQVFIG 64 (79)
T ss_pred EEEEECCCCHhHHHHHHHHH-------HcCCCcEEEECCCChHHHHHHHHHCCCCcCeEEEC
Confidence 44566899999999877775 45777666666655445556555542 33 5554
No 164
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=91.91 E-value=0.33 Score=37.75 Aligned_cols=64 Identities=23% Similarity=0.373 Sum_probs=48.0
Q ss_pred EEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEE--eCC--CHHHHHHHHHHhCCce-EEEcCChhHHHHcCCcc
Q 025522 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLI--GPG--SVEQARTFSEQTKFKG-VYADPNHSSYEALSFVS 172 (251)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaV--s~~--~~~~~~~f~~~~~~pf-l~sDp~~~ly~alGl~~ 172 (251)
.+|-..+|+.|++-...|.+ .|+....| ..+ +.+.++++..+.+.+. -+.......|+.+++..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 70 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE-------HGVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLKD 70 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH-------cCCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchHHhCCccc
Confidence 46778999999998887755 45444444 333 4578999999999988 55568888999999864
No 165
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=90.87 E-value=0.55 Score=35.86 Aligned_cols=64 Identities=13% Similarity=0.216 Sum_probs=47.6
Q ss_pred EEEEccCCChhhHHHHHHHHHcHHHHHHcCCE--EEEEeC--CCHHHHHHHHHHhCCce-EEEcCChhHHHHcCCc
Q 025522 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVA--LVLIGP--GSVEQARTFSEQTKFKG-VYADPNHSSYEALSFV 171 (251)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~--vVaVs~--~~~~~~~~f~~~~~~pf-l~sDp~~~ly~alGl~ 171 (251)
+.+|-..+|+.|++-...|.+ +|+. .+-|.. .+.+.++++..+.+.+. -+..+....|+.+|..
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~ 69 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEE-------HGIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLA 69 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHH-------cCCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCc
Confidence 357888999999998776655 4544 444433 34578999999988877 6667888899999886
No 166
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=90.66 E-value=1.5 Score=33.32 Aligned_cols=58 Identities=19% Similarity=0.275 Sum_probs=32.6
Q ss_pred CCCcEEEEEEcc----CCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHH-HHhC---CceEEEcC
Q 025522 95 KDRKAVVAFARH----FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS-EQTK---FKGVYADP 160 (251)
Q Consensus 95 ~~~~vVLvF~R~----~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~-~~~~---~pfl~sDp 160 (251)
...+ |++|-.+ .|||+|.+--.-|.+ .|+....+-.+.....++.. +..+ +|.|+.|-
T Consensus 10 ~~~~-Vvvf~kg~~~~~~Cp~C~~ak~lL~~-------~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g 75 (97)
T TIGR00365 10 KENP-VVLYMKGTPQFPQCGFSARAVQILKA-------CGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKG 75 (97)
T ss_pred ccCC-EEEEEccCCCCCCCchHHHHHHHHHH-------cCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECC
Confidence 3444 5666665 799999987766654 45555555554333334333 3333 33377663
No 167
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=90.36 E-value=1.6 Score=34.48 Aligned_cols=51 Identities=12% Similarity=0.198 Sum_probs=41.6
Q ss_pred CCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCC
Q 025522 90 ISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (251)
Q Consensus 90 ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~ 140 (251)
|+++.-.+++||+|-...--+.=+.++..|.+....|.++.+.++.|..+.
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~ 53 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDG 53 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCc
Confidence 444444567899999889999999999999999999999999988886554
No 168
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=90.32 E-value=1.4 Score=31.29 Aligned_cols=55 Identities=16% Similarity=0.208 Sum_probs=33.1
Q ss_pred EEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCH-HHHHHHH-HHhC---CceEEEcC
Q 025522 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQARTFS-EQTK---FKGVYADP 160 (251)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~-~~~~~f~-~~~~---~pfl~sDp 160 (251)
|++|-..|||+|..-...|.++.- ....+=|..++. ...+.+. +..+ +|.++.|.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g 61 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGG 61 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECC
Confidence 355668999999998888877543 345666665543 3343333 3333 44466653
No 169
>PRK12559 transcriptional regulator Spx; Provisional
Probab=90.20 E-value=0.98 Score=36.39 Aligned_cols=65 Identities=14% Similarity=0.230 Sum_probs=49.3
Q ss_pred EEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEE--e--CCCHHHHHHHHHHhCCce-EEEcCChhHHHHcCCcc
Q 025522 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLI--G--PGSVEQARTFSEQTKFKG-VYADPNHSSYEALSFVS 172 (251)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaV--s--~~~~~~~~~f~~~~~~pf-l~sDp~~~ly~alGl~~ 172 (251)
+.+|-..+|+.|++....|.+ .|+..-.+ . +-+.+.++.|.+..+.+. -+.......|+.+|+..
T Consensus 2 i~iY~~~~C~~crkA~~~L~~-------~gi~~~~~di~~~~~s~~el~~~l~~~~~g~~~lin~~~~~~k~l~~~~ 71 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEE-------NQIDYTEKNIVSNSMTVDELKSILRLTEEGATEIISTRSKTFQDLNINI 71 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------cCCCeEEEEeeCCcCCHHHHHHHHHHcCCCHHHHHhcCcHHHHhCCCCc
Confidence 567889999999998766644 45554444 3 335589999999988887 66678889999999875
No 170
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=90.05 E-value=0.87 Score=35.54 Aligned_cols=65 Identities=12% Similarity=0.174 Sum_probs=50.2
Q ss_pred EEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeC--C--CHHHHHHHHHHhCCce-EEEcCChhHHHHcCCcc
Q 025522 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--G--SVEQARTFSEQTKFKG-VYADPNHSSYEALSFVS 172 (251)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~--~--~~~~~~~f~~~~~~pf-l~sDp~~~ly~alGl~~ 172 (251)
+.+|-..+|+.|++-...|.+ .|+.+-.|-. + +.+.+++|.+..+.+. -+.......|+.+++..
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~-------~gi~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~n~~~~~~k~l~~~~ 71 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEE-------HQIPFEERNLFKQPLTKEELKEILSLTENGVEDIISTRSKAFKNLNIDI 71 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CCCceEEEecCCCcchHHHHHHHHHHhcCCHHHHHhcCcHHHHHcCCCc
Confidence 457888999999998777654 4655555543 3 3579999999988788 67789999999999865
No 171
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=89.91 E-value=0.91 Score=35.49 Aligned_cols=63 Identities=21% Similarity=0.268 Sum_probs=48.4
Q ss_pred EEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCC----CHHHHHHHHHHhCCce-EEEcCChhHHHHcCCc
Q 025522 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG----SVEQARTFSEQTKFKG-VYADPNHSSYEALSFV 171 (251)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~----~~~~~~~f~~~~~~pf-l~sDp~~~ly~alGl~ 171 (251)
.+|-..+|+.|++-...|.+ .|+....|... +.+.+.++.+..+... -+.+.....|+.+++.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~el~~l~~~~~~~~~~lin~~~~~~k~l~~~ 69 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA-------NGIEYQFIDIGEDGPTREELLDILSLLEDGIDPLLNTRGQSYRALNTS 69 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------cCCceEEEecCCChhhHHHHHHHHHHcCCCHHHheeCCCcchhhCCch
Confidence 46778999999998887765 46555555432 3468889999999877 6677899999999974
No 172
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=89.35 E-value=2.8 Score=28.43 Aligned_cols=43 Identities=14% Similarity=0.321 Sum_probs=27.0
Q ss_pred EEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCC-HHHHHHHHHH
Q 025522 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-VEQARTFSEQ 150 (251)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~-~~~~~~f~~~ 150 (251)
+.+|-..|||.|++-...|.+ .|+....+..+. .+..++|.+.
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~~i~~~~~~i~~~~~~~~~~~~~ 45 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------RGIPFEEVDVDEDPEALEELKKL 45 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------CCCCeEEEeCCCCHHHHHHHHHH
Confidence 456678899999986555543 566666666654 3344455544
No 173
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=89.01 E-value=2.5 Score=31.35 Aligned_cols=61 Identities=25% Similarity=0.340 Sum_probs=32.3
Q ss_pred CccCCCcEEEEEEcc----CCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHH-HHHHhC---CceEEEcC
Q 025522 92 DLWKDRKAVVAFARH----FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART-FSEQTK---FKGVYADP 160 (251)
Q Consensus 92 ~l~~~~~vVLvF~R~----~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~-f~~~~~---~pfl~sDp 160 (251)
++.++.++ ++|--+ .|||+|.+-...|.+. |+..-.|..+....+++ ..+..+ +|.|+.|-
T Consensus 3 ~~i~~~~v-vvf~k~~~~~~~Cp~C~~ak~~L~~~-------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g 71 (90)
T cd03028 3 KLIKENPV-VLFMKGTPEEPRCGFSRKVVQILNQL-------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNG 71 (90)
T ss_pred hhhccCCE-EEEEcCCCCCCCCcHHHHHHHHHHHc-------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECC
Confidence 34445554 455543 6999999877766554 44444444333233433 333333 33377663
No 174
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=88.91 E-value=2.3 Score=29.91 Aligned_cols=52 Identities=21% Similarity=0.363 Sum_probs=32.9
Q ss_pred EEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCC-ce--EEEc
Q 025522 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF-KG--VYAD 159 (251)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~-pf--l~sD 159 (251)
+.+|-..+||+|++-...|. +.|+..-.+-.+......+...+.+. .. ++.|
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~-------~~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~~ 55 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALE-------EHGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVAD 55 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHH-------HCCCceEEEECCCCHHHHHHHHHcCCcccCEEEEC
Confidence 35677899999999888875 45777666666544334444444443 33 5554
No 175
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=88.84 E-value=2.4 Score=28.55 Aligned_cols=45 Identities=16% Similarity=0.219 Sum_probs=28.2
Q ss_pred EEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHH-HHHHHHHHhC
Q 025522 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE-QARTFSEQTK 152 (251)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~-~~~~f~~~~~ 152 (251)
|+.|-..|||+|++-...|.+. |+...-+..+... ..+.+.+..+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~-------~i~~~~~di~~~~~~~~~l~~~~~ 47 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL-------GIEFEEIDILEDGELREELKELSG 47 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------CCcEEEEECCCCHHHHHHHHHHhC
Confidence 3455688999999988777654 4666666655443 3344444444
No 176
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=88.72 E-value=3.4 Score=28.78 Aligned_cols=53 Identities=13% Similarity=0.223 Sum_probs=34.0
Q ss_pred EEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCC-HHHHHHHHHHhC----CceEEEcC
Q 025522 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-VEQARTFSEQTK----FKGVYADP 160 (251)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~-~~~~~~f~~~~~----~pfl~sDp 160 (251)
|..|-..+||+|.+-...|++ .|+..-.+..+. .+..+++.+..+ +|.|+.|-
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g 59 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------KGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGD 59 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------CCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECC
Confidence 456778999999998777754 566666666554 445555655544 33366653
No 177
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=88.21 E-value=2.7 Score=29.46 Aligned_cols=53 Identities=23% Similarity=0.372 Sum_probs=31.5
Q ss_pred EEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhC---CceEEEcC
Q 025522 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTK---FKGVYADP 160 (251)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~---~pfl~sDp 160 (251)
|+.|-..|||+|.+-...|.+ .|+....+..+.....+.+....+ +|.|+.|-
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~-------~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi~g 58 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE-------NGISYEEIPLGKDITGRSLRAVTGAMTVPQVFIDG 58 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cCCCcEEEECCCChhHHHHHHHhCCCCcCeEEECC
Confidence 345567999999998777653 566655555554333444443333 33366663
No 178
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=87.91 E-value=1 Score=42.45 Aligned_cols=64 Identities=11% Similarity=0.009 Sum_probs=39.9
Q ss_pred CcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce-EEEcCC
Q 025522 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG-VYADPN 161 (251)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf-l~sDp~ 161 (251)
....++.|-..||.+|.+.++.+.++...++. -+.+..|.++....+-+-..-.++|- .+-.++
T Consensus 47 ~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~-~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~ 111 (383)
T KOG0191|consen 47 DSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG-KVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPG 111 (383)
T ss_pred CCceEEEEECCCCcchhhhchHHHHHHHHhcC-ceEEEEeCchhhHHHHHhcCCccCcEEEEEcCC
Confidence 34555566699999999999999988777765 34455555544433333333335555 444454
No 179
>PRK06184 hypothetical protein; Provisional
Probab=87.58 E-value=4.9 Score=38.96 Aligned_cols=75 Identities=13% Similarity=0.228 Sum_probs=48.4
Q ss_pred CCccccCCCCCcEEecCCCCeEeCCCccCC-CcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHH
Q 025522 67 VSEDTKNLLDTVKVYDVNGNAIPISDLWKD-RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQAR 145 (251)
Q Consensus 67 ~~~~~g~~ap~f~l~d~~G~~v~ls~l~~~-~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~ 145 (251)
+....|..+|+..+.+.+|+.+++-+++.+ +.+||.|--..+ ......|+.++.|+...
T Consensus 384 ~~~~~G~r~p~~~~~~~~~~~~~l~d~~~~~~~~ll~~~~~~~---------------~~~~~~~~~~~~~~~~~----- 443 (502)
T PRK06184 384 GGLRAGDRAPDAPLLGAAGQPTRLFDLFRGPHWTLLAFGAGAA---------------AILARRGLRIHRVGDAA----- 443 (502)
T ss_pred CCCCCcCCCCCchhccCCCceeeHHHhhCCCcEEEEEecCCch---------------hhhhhcCceEEEecccC-----
Confidence 345679999999998778888889888864 566666532222 01124567777776432
Q ss_pred HHHHHhCCce-EEEcCChhHHHHcC
Q 025522 146 TFSEQTKFKG-VYADPNHSSYEALS 169 (251)
Q Consensus 146 ~f~~~~~~pf-l~sDp~~~ly~alG 169 (251)
.. .+.|++..+++.||
T Consensus 444 --------~~~~~~d~~g~~~~~~~ 460 (502)
T PRK06184 444 --------EGGDLVDDAGHFRDAYG 460 (502)
T ss_pred --------CCCceeCCCccHHHHhc
Confidence 23 66787766555554
No 180
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=87.45 E-value=2.2 Score=31.19 Aligned_cols=53 Identities=21% Similarity=0.370 Sum_probs=33.6
Q ss_pred EEEEccCCChhhHHHHHHHHHcHHHHHHcCCE--EEEEeCCCHHHHHHHHHHhC--Cce--EEEcC
Q 025522 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVA--LVLIGPGSVEQARTFSEQTK--FKG--VYADP 160 (251)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~--vVaVs~~~~~~~~~f~~~~~--~pf--l~sDp 160 (251)
+..|-..|||+|.+--..|. +.|+. .+-|..+..+..++++++.. .++ |+.|-
T Consensus 3 v~iyt~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~ 61 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD-------RKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGG 61 (80)
T ss_pred EEEEECCCCchHHHHHHHHH-------HcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECC
Confidence 34556778999998766665 55555 44444455457777877763 444 66664
No 181
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=87.33 E-value=0.85 Score=35.95 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=28.2
Q ss_pred CCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEE
Q 025522 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLI 136 (251)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaV 136 (251)
+.++.|+.|--.+||+|+..-+.+.+...+.. .++++.+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~--~~~~~~~ 42 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP--DVRVVFK 42 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC--CceEEEE
Confidence 45777788889999999999988887665442 2444443
No 182
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=87.22 E-value=2.4 Score=33.40 Aligned_cols=65 Identities=5% Similarity=-0.001 Sum_probs=38.1
Q ss_pred CCcEEEEEEccC----CChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHH--HHHHHHHhCCce-EEEcCCh
Q 025522 96 DRKAVVAFARHF----GCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQ--ARTFSEQTKFKG-VYADPNH 162 (251)
Q Consensus 96 ~~~vVLvF~R~~----~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~--~~~f~~~~~~pf-l~sDp~~ 162 (251)
+.|.++|++-.. ||.+|++-+.. .+..+-+ +.+.-+++....+.+. +.....-..+|+ ++.++..
T Consensus 16 e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~l-n~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~ 87 (116)
T cd02991 16 ELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYI-NTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKD 87 (116)
T ss_pred hCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHH-HcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecC
Confidence 467888888887 89999765521 1112222 3466666666666652 333334447999 7765543
No 183
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=87.19 E-value=0.95 Score=41.06 Aligned_cols=84 Identities=15% Similarity=0.088 Sum_probs=55.9
Q ss_pred ccccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEE-ccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHH
Q 025522 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFA-RHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (251)
Q Consensus 69 ~~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vVLvF~-R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f 147 (251)
.+..+..|-|++.|.+|+++-.+.- .++++.-+|+ |. -.....+.+|++..+++ +.+++|+.|+-+...+++
T Consensus 76 ~ekL~~VPVFtItn~~G~pvl~s~~-~~~~~~gvf~s~q---edA~afL~~lk~~~p~l-~~~~kV~pvsL~~vYkl~-- 148 (270)
T TIGR00995 76 AKILAGTSVFTVSNAQNEFVLASDN-DGEKSIGLLCFRQ---EDAEAFLAQLRKRKPEV-GSQAKVVPITLDQVYKLK-- 148 (270)
T ss_pred HHHhcCCceEEEEcCCCCeEEEECC-CCCceEEEEECCH---HHHHHHHHHHHhhCccc-cCCceEEEEEHHHHHHHh--
Confidence 4566779999999999999877754 2344444443 22 12344455555555655 478999999988876553
Q ss_pred HHHhCCce-EEEcCC
Q 025522 148 SEQTKFKG-VYADPN 161 (251)
Q Consensus 148 ~~~~~~pf-l~sDp~ 161 (251)
+.++.| ++.|+.
T Consensus 149 --~e~l~F~fiP~~~ 161 (270)
T TIGR00995 149 --VEGIGFRFLPDPA 161 (270)
T ss_pred --hcCccEEEeCCHH
Confidence 345888 887755
No 184
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=87.18 E-value=1.8 Score=31.81 Aligned_cols=58 Identities=10% Similarity=0.102 Sum_probs=34.0
Q ss_pred EEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCC-CHHHHHHHHHHhC---Cce--EEEcC
Q 025522 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG-SVEQARTFSEQTK---FKG--VYADP 160 (251)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~-~~~~~~~f~~~~~---~pf--l~sDp 160 (251)
|+.|-..|||+|.+-...|.++..+. .++...-|..+ +....+++.+..+ .+. |+.|-
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~--~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g 65 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIER--ADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDE 65 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCccc--CCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECC
Confidence 45667889999999888887765332 24455554444 2222334555544 344 66663
No 185
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=87.03 E-value=2 Score=34.39 Aligned_cols=49 Identities=22% Similarity=0.208 Sum_probs=35.7
Q ss_pred EeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHH-HHcCCEEEEEeC
Q 025522 88 IPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVM-DASGVALVLIGP 138 (251)
Q Consensus 88 v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~-~~~gv~vVaVs~ 138 (251)
+.+++- +.++.|+.|--+.||+|++....+.+..+++ +.-.+.++.+..
T Consensus 5 ~~~G~~--~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 5 PTIGNP--DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp EEES-T--TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CeecCC--CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 445553 5688888888999999999999999887776 344566666654
No 186
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=86.39 E-value=5.3 Score=28.03 Aligned_cols=52 Identities=21% Similarity=0.380 Sum_probs=31.9
Q ss_pred EEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCH-HHHHHHHHHhC---CceEEEc
Q 025522 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTK---FKGVYAD 159 (251)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~-~~~~~f~~~~~---~pfl~sD 159 (251)
|..|-..|||+|++-...|.+ .|+....+-.+.. +...++.+.++ +|.++.|
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~ 58 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------KGLPYVEINIDIFPERKAELEERTGSSVVPQIFFN 58 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------CCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEEC
Confidence 345667999999998777754 6666666666543 33344444433 3335555
No 187
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=86.39 E-value=4.3 Score=39.87 Aligned_cols=117 Identities=16% Similarity=0.139 Sum_probs=69.3
Q ss_pred CCccccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHH
Q 025522 67 VSEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (251)
Q Consensus 67 ~~~~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~ 146 (251)
+....|..+|+..+. .+|+.+++.|+...+.+||.|-...+ . ....+. ......+++++.+..+...
T Consensus 425 ~~~~pG~r~p~~~~~-~~~~~~~l~dl~g~~f~ll~~~~~~~----~---~~~~~~-~~~~~~~~~~~~~~~~~~~---- 491 (547)
T PRK08132 425 GGPVPGAPAPDAPVR-ADGEPGWLLDLLGGGFTLLLFGDDAA----A---AALLQA-LAAAALPVRVVAVVPAGAA---- 491 (547)
T ss_pred CCCCCCCCCCCCccc-CCCCceEHHHhcCCCEEEEEecCCch----h---hhhhhh-hhccCCceEEEEEecCccc----
Confidence 456679999999987 46778899999876677776632111 0 111111 1122445666666655311
Q ss_pred HHHHhCCce-EEEcCChhHHHHcCCccccccccCchhhHHHHHHHhhhhhhhcccccccCcCCCCccccceEEEEcCCCC
Q 025522 147 FSEQTKFKG-VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKS 225 (251)
Q Consensus 147 f~~~~~~pf-l~sDp~~~ly~alGl~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~ggg 225 (251)
.-+. .+.|++..+++.||+. .++.+++.|| |
T Consensus 492 -----~~~~~~~~d~~~~~~~~~~~~------------------------------------------~~~~~LvRPD-g 523 (547)
T PRK08132 492 -----QAAAGVLEDADGLAAERYDAR------------------------------------------PGTVYLIRPD-Q 523 (547)
T ss_pred -----ccCcccccCcccHHHHHhCCC------------------------------------------CCeEEEECCC-c
Confidence 1133 5677776666555432 1268899999 6
Q ss_pred eEEEEEeCCCCCCCCCHHHHHHHhh
Q 025522 226 NISYIHRDKEAGDDPDIQDILKACC 250 (251)
Q Consensus 226 ~I~~~h~~~~~~D~~~~~eIL~al~ 250 (251)
-|.|.... ..++.+++.+.
T Consensus 524 ~va~~~~~------~~~~~~~~~l~ 542 (547)
T PRK08132 524 HVAARWRT------PDAAAVRAALA 542 (547)
T ss_pred eEEEEecC------CCHHHHHHHHH
Confidence 89887543 25556655543
No 188
>PRK10638 glutaredoxin 3; Provisional
Probab=86.20 E-value=3.8 Score=29.68 Aligned_cols=52 Identities=15% Similarity=0.307 Sum_probs=32.3
Q ss_pred EEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCH-HHHHHHHHHhCCc---eEEEc
Q 025522 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTKFK---GVYAD 159 (251)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~-~~~~~f~~~~~~p---fl~sD 159 (251)
|.+|-..|||+|++-...|.+ .|+....+..+.. +..+++.+..+.. .|+.|
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~-------~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~ 59 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNS-------KGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFID 59 (83)
T ss_pred EEEEECCCChhHHHHHHHHHH-------cCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEEC
Confidence 456778999999998887765 4555445555433 3445566655543 36565
No 189
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.99 E-value=1.2 Score=35.77 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=32.7
Q ss_pred CcEEEEEEcc-------CCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHH
Q 025522 97 RKAVVAFARH-------FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (251)
Q Consensus 97 ~~vVLvF~R~-------~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~ 142 (251)
+.+.+.|+-. +|||.|....+-+.+.... ...++.+|-|..++.+
T Consensus 26 ~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~-ap~~~~~v~v~VG~rp 77 (128)
T KOG3425|consen 26 KTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKH-APEDVHFVHVYVGNRP 77 (128)
T ss_pred ceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHh-CCCceEEEEEEecCCC
Confidence 4455555533 4999999999999887663 3567888888888753
No 190
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=85.98 E-value=0.92 Score=44.51 Aligned_cols=34 Identities=15% Similarity=0.112 Sum_probs=28.6
Q ss_pred CCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHc
Q 025522 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS 129 (251)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~ 129 (251)
.++-||+-|-+.||++|....+.++++.+.++..
T Consensus 383 e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~ 416 (493)
T KOG0190|consen 383 EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDD 416 (493)
T ss_pred cccceEEEEcCcccchhhhhhhHHHHHHHHhcCC
Confidence 3556677777999999999999999999998774
No 191
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=85.97 E-value=2.9 Score=33.65 Aligned_cols=65 Identities=14% Similarity=0.114 Sum_probs=48.6
Q ss_pred EEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeC----CCHHHHHHHHHHhCCce-EEEcCChhHHHHcCCcc
Q 025522 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP----GSVEQARTFSEQTKFKG-VYADPNHSSYEALSFVS 172 (251)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~----~~~~~~~~f~~~~~~pf-l~sDp~~~ly~alGl~~ 172 (251)
+.+|-..+|+.|++-...| ++.|+..-.|-. -+.+.++.|.+..+..+ -+.......|+.++...
T Consensus 2 i~iY~~~~C~~crkA~~~L-------~~~~i~~~~~d~~~~~~s~~eL~~~l~~~~~~~~~lin~~~~~~k~L~~~~ 71 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWL-------NAHQLSYKEQNLGKEPLTKEEILAILTKTENGIESIVSSKNRYAKALDCDI 71 (132)
T ss_pred EEEEeCCCCHHHHHHHHHH-------HHcCCCeEEEECCCCCCCHHHHHHHHHHhCCCHHHhhccCcHHHHhCCcch
Confidence 4567789999999976555 455655555542 34589999999998887 55568889999999765
No 192
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=85.77 E-value=3.1 Score=36.10 Aligned_cols=54 Identities=26% Similarity=0.497 Sum_probs=44.5
Q ss_pred CCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEe-CCCHHHHHHHHHHhCCce
Q 025522 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG-PGSVEQARTFSEQTKFKG 155 (251)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs-~~~~~~~~~f~~~~~~pf 155 (251)
....+.+|.. .-|+.|-..+..+.. ....+.|+.|+ .++.+.++.|+.+++++-
T Consensus 108 ~~~rlalFvk-d~C~~C~~~~~~l~a-----~~~~~Diylvgs~~dD~~Ir~WA~~~~Idp 162 (200)
T TIGR03759 108 GGGRLALFVK-DDCVACDARVQRLLA-----DNAPLDLYLVGSQGDDERIRQWANRHQIDP 162 (200)
T ss_pred CCCeEEEEeC-CCChHHHHHHHHHhc-----CCCceeEEEecCCCCHHHHHHHHHHcCCCH
Confidence 4556888888 899999999999855 35678888888 456689999999999985
No 193
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.14 E-value=1.2 Score=40.11 Aligned_cols=31 Identities=19% Similarity=0.167 Sum_probs=27.5
Q ss_pred CCcEEEEEEccCCChhhHHHHHHHHHcHHHH
Q 025522 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVM 126 (251)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~ 126 (251)
+.+.|++-|-+.||.+|..-++-++.+..++
T Consensus 20 g~k~v~Vdfta~wCGPCk~IaP~Fs~lankY 50 (288)
T KOG0908|consen 20 GGKLVVVDFTASWCGPCKRIAPIFSDLANKY 50 (288)
T ss_pred CceEEEEEEEecccchHHhhhhHHHHhhhhC
Confidence 4689999999999999999999998887665
No 194
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=85.07 E-value=1.9 Score=33.27 Aligned_cols=63 Identities=13% Similarity=0.222 Sum_probs=45.3
Q ss_pred EEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEE--eCC--CHHHHHHHHHHhCCceEEEcCChhHHHHcCCc
Q 025522 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLI--GPG--SVEQARTFSEQTKFKGVYADPNHSSYEALSFV 171 (251)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaV--s~~--~~~~~~~f~~~~~~pfl~sDp~~~ly~alGl~ 171 (251)
+.+|-..+|+.|++....|.+ .|+..-.+ -.+ +.+.++++.++.++ --+.......|+.+|+.
T Consensus 1 i~iy~~~~C~~crka~~~L~~-------~~i~~~~~di~~~p~s~~eL~~~l~~~g~-~~li~~~~~~yk~l~l~ 67 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEA-------RGVAYTFHDYRKDGLDAATLERWLAKVGW-ETLLNKRGTTWRKLDDA 67 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHH-------cCCCeEEEecccCCCCHHHHHHHHHHhCh-HHHHccCchHHHhCChh
Confidence 357888999999998877754 45444444 333 55899999998772 24446778999999886
No 195
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=84.30 E-value=2.7 Score=31.95 Aligned_cols=25 Identities=24% Similarity=0.554 Sum_probs=15.9
Q ss_pred CCCcEEEEEEccCCChhhHHHHHHHHH
Q 025522 95 KDRKAVVAFARHFGCVLCRKRADYLAA 121 (251)
Q Consensus 95 ~~~~vVLvF~R~~~Cp~C~~el~~L~~ 121 (251)
++.+ |++| -..|||+|++--.-|.+
T Consensus 6 ~~~~-Vvvy-sk~~Cp~C~~ak~~L~~ 30 (99)
T TIGR02189 6 SEKA-VVIF-SRSSCCMCHVVKRLLLT 30 (99)
T ss_pred ccCC-EEEE-ECCCCHHHHHHHHHHHH
Confidence 4444 3344 35999999977665544
No 196
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=83.06 E-value=3 Score=35.40 Aligned_cols=43 Identities=14% Similarity=0.190 Sum_probs=37.5
Q ss_pred HHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCceEEE
Q 025522 116 ADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGVYA 158 (251)
Q Consensus 116 l~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pfl~s 158 (251)
.+++.+-..+++++|+.+++||..+...++.|++..+++||+-
T Consensus 48 tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~fi~~ 90 (175)
T COG2179 48 TPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPFIYR 90 (175)
T ss_pred CHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCceeec
Confidence 3677777888899999999999999999999999999999443
No 197
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=82.17 E-value=5.6 Score=28.19 Aligned_cols=52 Identities=13% Similarity=0.265 Sum_probs=31.7
Q ss_pred EEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCC-CHHHHHHHHHHhC---CceEEEc
Q 025522 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG-SVEQARTFSEQTK---FKGVYAD 159 (251)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~-~~~~~~~f~~~~~---~pfl~sD 159 (251)
|..|...|||+|.+-...|.+ .|+..--+..+ +.+..+++.+..+ +|.|+.|
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~-------~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~ 56 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSS-------KGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIG 56 (79)
T ss_pred CEEEecCCChhHHHHHHHHHH-------cCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEEC
Confidence 356778999999998887765 34444444333 3344556655544 3436666
No 198
>PRK10824 glutaredoxin-4; Provisional
Probab=81.80 E-value=8.7 Score=30.36 Aligned_cols=57 Identities=12% Similarity=0.189 Sum_probs=32.8
Q ss_pred EEEEEEcc----CCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCc-e--EEEcCC
Q 025522 99 AVVAFARH----FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK-G--VYADPN 161 (251)
Q Consensus 99 vVLvF~R~----~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~p-f--l~sDp~ 161 (251)
.|++|..+ .|||+|++-..-|.+..- ....+-|.. +.+....+.+..+++ + |+.|-+
T Consensus 16 ~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i-----~~~~idi~~-d~~~~~~l~~~sg~~TVPQIFI~G~ 79 (115)
T PRK10824 16 PILLYMKGSPKLPSCGFSAQAVQALSACGE-----RFAYVDILQ-NPDIRAELPKYANWPTFPQLWVDGE 79 (115)
T ss_pred CEEEEECCCCCCCCCchHHHHHHHHHHcCC-----CceEEEecC-CHHHHHHHHHHhCCCCCCeEEECCE
Confidence 46667776 599999988777765421 123344432 333333444555654 4 888744
No 199
>PRK10329 glutaredoxin-like protein; Provisional
Probab=81.39 E-value=9.5 Score=27.85 Aligned_cols=45 Identities=16% Similarity=0.306 Sum_probs=29.4
Q ss_pred EEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhC
Q 025522 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTK 152 (251)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~ 152 (251)
|..|-..|||+|..--..| ++.|+..-.|-.+......+.....+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L-------~~~gI~~~~idi~~~~~~~~~~~~~g 47 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAM-------ESRGFDFEMINVDRVPEAAETLRAQG 47 (81)
T ss_pred EEEEeCCCCHhHHHHHHHH-------HHCCCceEEEECCCCHHHHHHHHHcC
Confidence 4566789999999866665 45788877777765444444333333
No 200
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=80.81 E-value=1.5 Score=43.76 Aligned_cols=74 Identities=14% Similarity=0.174 Sum_probs=47.2
Q ss_pred CCCccCCCc--EEEEEEccCCChhhHHHHHHH-HHcHHHHHHcCCEEEEEeCC-CHHHHHHHHHHh---CCce-EEEcCC
Q 025522 90 ISDLWKDRK--AVVAFARHFGCVLCRKRADYL-AAKKDVMDASGVALVLIGPG-SVEQARTFSEQT---KFKG-VYADPN 161 (251)
Q Consensus 90 ls~l~~~~~--vVLvF~R~~~Cp~C~~el~~L-~~~~~~~~~~gv~vVaVs~~-~~~~~~~f~~~~---~~pf-l~sDp~ 161 (251)
+.+.+++.+ .|++.|-+.||--|++--+.. ++...+++..|+.++=+... +..+.+++.+++ +.|. ++.|++
T Consensus 465 L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~~~ 544 (569)
T COG4232 465 LDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVPTYLFFGPQ 544 (569)
T ss_pred HHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEECCC
Confidence 344444444 788888899999999855443 34455566677776554432 224566666665 5777 998876
Q ss_pred hh
Q 025522 162 HS 163 (251)
Q Consensus 162 ~~ 163 (251)
.+
T Consensus 545 g~ 546 (569)
T COG4232 545 GS 546 (569)
T ss_pred CC
Confidence 53
No 201
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=79.60 E-value=3.6 Score=38.69 Aligned_cols=57 Identities=14% Similarity=0.054 Sum_probs=43.1
Q ss_pred EEEEEEccCCChhhHHHHHHHHHcHHHHHH-cCCEEEEEeCCCHHHHHHHHHHhCCce
Q 025522 99 AVVAFARHFGCVLCRKRADYLAAKKDVMDA-SGVALVLIGPGSVEQARTFSEQTKFKG 155 (251)
Q Consensus 99 vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~-~gv~vVaVs~~~~~~~~~f~~~~~~pf 155 (251)
..++.|-..||++|+..++.+.+....++. .++.+..+..+....+....+-.++|-
T Consensus 164 ~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt 221 (383)
T KOG0191|consen 164 DWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPT 221 (383)
T ss_pred ceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCce
Confidence 344444699999999999999999888874 778888888875555555555556765
No 202
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=79.53 E-value=3.5 Score=32.64 Aligned_cols=61 Identities=8% Similarity=-0.014 Sum_probs=32.1
Q ss_pred CCCccCCCcEEEEEEcc--CCChhhHHHHHHHHHcHHHHHHc--CCEEEEEeCCCHH--HHHHHHHHhCCc
Q 025522 90 ISDLWKDRKAVVAFARH--FGCVLCRKRADYLAAKKDVMDAS--GVALVLIGPGSVE--QARTFSEQTKFK 154 (251)
Q Consensus 90 ls~l~~~~~vVLvF~R~--~~Cp~C~~el~~L~~~~~~~~~~--gv~vVaVs~~~~~--~~~~f~~~~~~p 154 (251)
+.+..++.+.+||-|-+ .||. + ++...++.+++.+. .+.|.-|.+++.. .-++.++++++.
T Consensus 11 F~~~v~~~~~vlV~F~A~~Pwc~---k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~ 77 (116)
T cd03007 11 FYKVIPKFKYSLVKFDTAYPYGE---K-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLD 77 (116)
T ss_pred HHHHHhcCCcEEEEEeCCCCCCC---C-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCC
Confidence 34445556667777778 5665 3 24455555555332 2555556664311 224566666553
No 203
>PHA03050 glutaredoxin; Provisional
Probab=78.36 E-value=2.4 Score=32.95 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=16.0
Q ss_pred EEEEccCCChhhHHHHHHHHHc
Q 025522 101 VAFARHFGCVLCRKRADYLAAK 122 (251)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~ 122 (251)
|+.|-..|||+|++-..-|.+.
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~ 36 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKF 36 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHc
Confidence 3445689999998877666554
No 204
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=74.17 E-value=5.6 Score=33.63 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=20.8
Q ss_pred CCcEEEEEEccCCChhhHHHHHHHHH
Q 025522 96 DRKAVVAFARHFGCVLCRKRADYLAA 121 (251)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~ 121 (251)
+.+..|+.|--..||+|++..+.+.+
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh
Confidence 34566666668999999999999877
No 205
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=73.80 E-value=35 Score=33.45 Aligned_cols=86 Identities=17% Similarity=0.168 Sum_probs=51.6
Q ss_pred CccccCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHH-HcHHHHHHcCCEEEEEeCCCHHHHHH
Q 025522 68 SEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLA-AKKDVMDASGVALVLIGPGSVEQART 146 (251)
Q Consensus 68 ~~~~g~~ap~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~-~~~~~~~~~gv~vVaVs~~~~~~~~~ 146 (251)
.+..|..+|+..+.+.+|....+.++...+.+||.| ++.. ...+. .....++..|+.+|.+.++....
T Consensus 410 ~~~~G~~~p~~~~~~~~~~~~~~d~~~~~~~~ll~~----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 478 (538)
T PRK06183 410 HSPVGTLFPQPRVELGGGDRGLLDDVLGPGFAVLGW----GCDP----LAGLSDEQRARWRALGARFVQVVPAVQAH--- 478 (538)
T ss_pred CCCcccCcCCCeeEcCCCCcccchhccCCceEEEEe----cCCc----hhcCCHHHHHHHHHcCCeEEEEecccccc---
Confidence 346899999999987766655577777667777765 2211 11111 11233567889998887764221
Q ss_pred HHHHhCCce-EEEcCChhHHHHcC
Q 025522 147 FSEQTKFKG-VYADPNHSSYEALS 169 (251)
Q Consensus 147 f~~~~~~pf-l~sDp~~~ly~alG 169 (251)
.-.. .+.|.+..+.+.|+
T Consensus 479 -----~~~~~~~~d~~g~~~~~~~ 497 (538)
T PRK06183 479 -----TAQDDHDSDVDGALRAWLA 497 (538)
T ss_pred -----cCCCceeecCCchHHHHHH
Confidence 0123 67787766554443
No 206
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=72.46 E-value=10 Score=30.93 Aligned_cols=48 Identities=15% Similarity=0.221 Sum_probs=37.5
Q ss_pred HHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCceEEEcCCh
Q 025522 115 RADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGVYADPNH 162 (251)
Q Consensus 115 el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pfl~sDp~~ 162 (251)
....|.++..++++.|+.++++..+..+.+.++++++++.-||.+.+-
T Consensus 51 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~ 98 (165)
T PF00875_consen 51 LLESLADLQESLRKLGIPLLVLRGDPEEVLPELAKEYGATAVYFNEEY 98 (165)
T ss_dssp HHHHHHHHHHHHHHTTS-EEEEESSHHHHHHHHHHHHTESEEEEE---
T ss_pred HHHHHHHHHHHHHhcCcceEEEecchHHHHHHHHHhcCcCeeEecccc
Confidence 345777889999999999999998888999999999986668887663
No 207
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=72.24 E-value=3.2 Score=41.38 Aligned_cols=57 Identities=16% Similarity=0.118 Sum_probs=42.8
Q ss_pred cEEEEEEccCCChhhHHHHHHHHHcHHHHHHcC--CEEEEEeCCCHHHHHHHHHHhCCce
Q 025522 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASG--VALVLIGPGSVEQARTFSEQTKFKG 155 (251)
Q Consensus 98 ~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~g--v~vVaVs~~~~~~~~~f~~~~~~pf 155 (251)
+.-||-|-.+||+.|+.+++.+.+....+++-. +.|.+|-|.+.+ -.+.|.++++++
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~-N~~lCRef~V~~ 116 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEE-NVKLCREFSVSG 116 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchh-hhhhHhhcCCCC
Confidence 344555569999999999999999988887543 678888887754 445677777664
No 208
>PRK10026 arsenate reductase; Provisional
Probab=71.94 E-value=10 Score=31.11 Aligned_cols=65 Identities=12% Similarity=0.198 Sum_probs=49.3
Q ss_pred EEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEE--eCC--CHHHHHHHHHHhCCce-EEEcCChhHHHHcCCcc
Q 025522 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLI--GPG--SVEQARTFSEQTKFKG-VYADPNHSSYEALSFVS 172 (251)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaV--s~~--~~~~~~~f~~~~~~pf-l~sDp~~~ly~alGl~~ 172 (251)
+.+|-...|.-|++.+..|.+. |+.+..+ -.+ +.+.++.|.++.+++. -+.-.....|+.+|+..
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~-------gi~~~~~d~~~~ppt~~eL~~~l~~~g~~~~~lint~~~~yr~L~~~~ 73 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS-------GTEPTIIHYLETPPTRDELVKLIADMGISVRALLRKNVEPYEELGLAE 73 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-------CCCcEEEeeeCCCcCHHHHHHHHHhCCCCHHHHHHcCCchHHHcCCCc
Confidence 5688899999999999888665 4443333 344 4589999999999876 44467888999999865
No 209
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=71.88 E-value=8.2 Score=33.96 Aligned_cols=37 Identities=19% Similarity=0.412 Sum_probs=27.5
Q ss_pred CCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEE
Q 025522 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLI 136 (251)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaV 136 (251)
+++..|+.|--.-||+|++.-+++.++ .+.|++|..+
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~----~~~~v~v~~~ 142 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDY----NALGITVRYL 142 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHH----hcCCeEEEEE
Confidence 456667777799999999998887654 3367887665
No 210
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=71.50 E-value=9.8 Score=29.50 Aligned_cols=64 Identities=11% Similarity=0.220 Sum_probs=48.5
Q ss_pred EEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEe--CC--CHHHHHHHHHHhCCce-EEEcCChhHHHHcCCcc
Q 025522 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG--PG--SVEQARTFSEQTKFKG-VYADPNHSSYEALSFVS 172 (251)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs--~~--~~~~~~~f~~~~~~pf-l~sDp~~~ly~alGl~~ 172 (251)
.+|-...|.-|++.+..|++ .|+.+..+- .+ +.++++.+++..+.+. -+.......|+.+++..
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~-------~~i~~~~~di~~~~~t~~el~~~l~~~~~~~~~lin~~~~~y~~l~~~~ 70 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEE-------AGIEPEIVEYLKTPPTAAELRELLAKLGISPRDLLRTKEAPYKELGLAD 70 (112)
T ss_pred EEEECCCCHHHHHHHHHHHH-------CCCCeEEEecccCCcCHHHHHHHHHHcCCCHHHHHhcCCchHHHcCCCc
Confidence 56778999999998776644 455555543 23 4589999999999877 55578889999998875
No 211
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=70.77 E-value=7.2 Score=30.31 Aligned_cols=53 Identities=19% Similarity=0.358 Sum_probs=29.5
Q ss_pred EEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCH---HHHHHHHHHh----CCceEEEc
Q 025522 99 AVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV---EQARTFSEQT----KFKGVYAD 159 (251)
Q Consensus 99 vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~---~~~~~f~~~~----~~pfl~sD 159 (251)
.||+|-+ +|||+|.. +++| |...|+...+|-.|.. ++++++..+. .+|.|+.+
T Consensus 15 ~VVifSK-s~C~~c~~-~k~l------l~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~ 74 (104)
T KOG1752|consen 15 PVVIFSK-SSCPYCHR-AKEL------LSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIG 74 (104)
T ss_pred CEEEEEC-CcCchHHH-HHHH------HHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEEC
Confidence 4566665 99999998 5555 2335555444444432 3555554432 24435554
No 212
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=69.56 E-value=7 Score=31.74 Aligned_cols=38 Identities=21% Similarity=0.229 Sum_probs=28.7
Q ss_pred CCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEE
Q 025522 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALV 134 (251)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vV 134 (251)
+.++.|+.|--+.||+|...-+.+.+...+. ..++.+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~-~~~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKL-PKDVKFE 51 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhC-CCCceEE
Confidence 4567777777899999999999998877765 3345544
No 213
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=69.01 E-value=15 Score=26.57 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=36.1
Q ss_pred EEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce--EEEcC
Q 025522 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG--VYADP 160 (251)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf--l~sDp 160 (251)
|++|-..+|..|..-...|.+... +.++.+-.|-.++.+. +.++++... +..|.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~---~~~~~l~~vDI~~d~~---l~~~Y~~~IPVl~~~~ 57 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAA---EFPFELEEVDIDEDPE---LFEKYGYRIPVLHIDG 57 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCT---TSTCEEEEEETTTTHH---HHHHSCTSTSEEEETT
T ss_pred EEEEcCCCCChHHHHHHHHHHHHh---hcCceEEEEECCCCHH---HHHHhcCCCCEEEEcC
Confidence 678889999999988888876543 3457888888775433 555666554 44443
No 214
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=66.67 E-value=19 Score=30.28 Aligned_cols=69 Identities=9% Similarity=0.047 Sum_probs=35.3
Q ss_pred CcEEEEEEccCCChhhHHHHHHHHHc--HHHHHHcCCEEEEEeCCCHHHHHHHH--------HHhCCce-EEEcCChhHH
Q 025522 97 RKAVVAFARHFGCVLCRKRADYLAAK--KDVMDASGVALVLIGPGSVEQARTFS--------EQTKFKG-VYADPNHSSY 165 (251)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L~~~--~~~~~~~gv~vVaVs~~~~~~~~~f~--------~~~~~pf-l~sDp~~~ly 165 (251)
.+.|++.+-..||..|.....+-=+. ..++-+...--|-|-.+....+.... ...|+|. ++.+|+.+.+
T Consensus 37 ~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~p~ 116 (163)
T PF03190_consen 37 NKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPDGKPF 116 (163)
T ss_dssp T--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TTS-EE
T ss_pred CCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEECCCCCee
Confidence 56778888899999999877633222 22222344455556666544444322 3458999 9999997644
No 215
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=66.53 E-value=15 Score=27.25 Aligned_cols=38 Identities=13% Similarity=0.111 Sum_probs=32.0
Q ss_pred HHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCC
Q 025522 116 ADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (251)
Q Consensus 116 l~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~ 153 (251)
.+.+.+...++++.|+.++.++....+.++.+.++.++
T Consensus 26 ~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~ 63 (139)
T cd01427 26 YPGVKEALKELKEKGIKLALATNKSRREVLELLEELGL 63 (139)
T ss_pred CcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCC
Confidence 45566667778888999999999999999999999887
No 216
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=65.88 E-value=8.1 Score=34.72 Aligned_cols=38 Identities=24% Similarity=0.238 Sum_probs=32.4
Q ss_pred CccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHc
Q 025522 92 DLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS 129 (251)
Q Consensus 92 ~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~ 129 (251)
++..++|+.++|.-..|||+|-.+-..|-....+|..-
T Consensus 53 d~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~ 90 (249)
T PF06053_consen 53 DLAPNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNF 90 (249)
T ss_pred ccCCCCeeEEEEEecccCccchhhHHHHHHHHHhcCCe
Confidence 45567899999999999999999999998877777655
No 217
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=65.31 E-value=29 Score=25.97 Aligned_cols=53 Identities=8% Similarity=0.078 Sum_probs=42.2
Q ss_pred HcHHHHHHcCCEEEEEeCCCH----HHHHHHHHHhCCceEEEcCChhHHHHcCCccc
Q 025522 121 AKKDVMDASGVALVLIGPGSV----EQARTFSEQTKFKGVYADPNHSSYEALSFVSG 173 (251)
Q Consensus 121 ~~~~~~~~~gv~vVaVs~~~~----~~~~~f~~~~~~pfl~sDp~~~ly~alGl~~~ 173 (251)
+-...+++-.+.+|.|..|-. ..+...+++.++|++|.|.-.++-++.|+..+
T Consensus 20 qt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s~~~LGkAcgi~V~ 76 (84)
T PRK13600 20 ETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHALGKHVGINVN 76 (84)
T ss_pred HHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHhCCCcC
Confidence 334555556688888888743 47778999999999999999999999998864
No 218
>PTZ00062 glutaredoxin; Provisional
Probab=65.25 E-value=9.2 Score=33.22 Aligned_cols=62 Identities=15% Similarity=0.172 Sum_probs=34.3
Q ss_pred CCccCCCcEEEEEEcc----CCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHH-HHHhCCc-e--EEEcC
Q 025522 91 SDLWKDRKAVVAFARH----FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF-SEQTKFK-G--VYADP 160 (251)
Q Consensus 91 s~l~~~~~vVLvF~R~----~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f-~~~~~~p-f--l~sDp 160 (251)
.++.... -|++|..+ .+||+|++-..-|.+ .|+....+-.+..+.+++. .+..+.+ + |+.+-
T Consensus 107 ~~li~~~-~Vvvf~Kg~~~~p~C~~C~~~k~~L~~-------~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G 176 (204)
T PTZ00062 107 ERLIRNH-KILLFMKGSKTFPFCRFSNAVVNMLNS-------SGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNG 176 (204)
T ss_pred HHHHhcC-CEEEEEccCCCCCCChhHHHHHHHHHH-------cCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECC
Confidence 3444444 46677776 599999987776664 3444444444333334333 3334443 3 77764
No 219
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=62.65 E-value=14 Score=29.22 Aligned_cols=65 Identities=17% Similarity=0.290 Sum_probs=49.6
Q ss_pred EEEEccCCChhhHHHHHHHHHcHHHHHHcCCEE--EEEe--CCCHHHHHHHHHHhCCce-EEEcCChhHHHHcCCcc
Q 025522 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVAL--VLIG--PGSVEQARTFSEQTKFKG-VYADPNHSSYEALSFVS 172 (251)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~v--VaVs--~~~~~~~~~f~~~~~~pf-l~sDp~~~ly~alGl~~ 172 (251)
+.+|...-|.-|++-...| ++.|+.. +-+. +-+.+.+.+|.++.+.++ -+.......|++||...
T Consensus 3 itiy~~p~C~t~rka~~~L-------~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g~~~~~li~t~~~~~r~L~~~~ 72 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWL-------EEHGIEYTFIDYLKTPPSREELKKILSKLGDGVEELINTRGTTYRELNLDK 72 (117)
T ss_pred EEEEeCCCChHHHHHHHHH-------HHcCCCcEEEEeecCCCCHHHHHHHHHHcCccHHHHHHhccchHHHcCCcc
Confidence 6678889999999887766 4555554 3333 335689999999999888 66678899999999443
No 220
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=61.34 E-value=26 Score=27.17 Aligned_cols=64 Identities=9% Similarity=0.164 Sum_probs=47.0
Q ss_pred EEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEe--CC--CHHHHHHHHHHhCCce--EEEcCChhHHHHcCCcc
Q 025522 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG--PG--SVEQARTFSEQTKFKG--VYADPNHSSYEALSFVS 172 (251)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs--~~--~~~~~~~f~~~~~~pf--l~sDp~~~ly~alGl~~ 172 (251)
.+|-...|.-|++....|.+ .|+.+..+- .+ +.++++.+.+..+++. =+.......|+.+|+..
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~-------~~i~~~~~di~~~p~t~~el~~~l~~~g~~~~~~lin~~~~~~~~l~~~~ 71 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLED-------KGIEPEVVKYLKNPPTKSELEAIFAKLGLTVAREMIRTKEALYKELGLSD 71 (114)
T ss_pred EEEECCCCHHHHHHHHHHHH-------CCCCeEEEeccCCCcCHHHHHHHHHHcCCchHHHHHhcCCcHHHHcCCCc
Confidence 57778999999998877755 455544444 23 4589999999987651 24578888999998875
No 221
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=60.75 E-value=12 Score=26.42 Aligned_cols=35 Identities=20% Similarity=0.049 Sum_probs=24.7
Q ss_pred EEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEe
Q 025522 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG 137 (251)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs 137 (251)
.+|--..||+|...-+.|.+... ....++++.-+.
T Consensus 2 ~~f~d~~Cp~C~~~~~~l~~~~~-~~~~~~~~~~~~ 36 (98)
T cd02972 2 VEFFDPLCPYCYLFEPELEKLLY-ADDGGVRVVYRP 36 (98)
T ss_pred eEEECCCCHhHHhhhHHHHHHHh-hcCCcEEEEEec
Confidence 45668899999999999988762 234455555443
No 222
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=60.64 E-value=18 Score=33.77 Aligned_cols=33 Identities=6% Similarity=-0.034 Sum_probs=28.0
Q ss_pred CcEEEEEEccCCChhhHHHHHHHHHcHHHHHHc
Q 025522 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS 129 (251)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~ 129 (251)
.-+|++.|-+.||+|.|.-.+-+.+....+++.
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e 45 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQE 45 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHh
Confidence 457888888999999999999999988777654
No 223
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=58.90 E-value=31 Score=24.42 Aligned_cols=47 Identities=17% Similarity=0.362 Sum_probs=27.7
Q ss_pred cCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce---EEEc
Q 025522 106 HFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG---VYAD 159 (251)
Q Consensus 106 ~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf---l~sD 159 (251)
+.+||.|..-...+++...++ |+++=.+-..+.+.+ +++++.. ++.|
T Consensus 7 ~~~C~~C~~~~~~~~~~~~~~---~i~~ei~~~~~~~~~----~~ygv~~vPalvIn 56 (76)
T PF13192_consen 7 SPGCPYCPELVQLLKEAAEEL---GIEVEIIDIEDFEEI----EKYGVMSVPALVIN 56 (76)
T ss_dssp CSSCTTHHHHHHHHHHHHHHT---TEEEEEEETTTHHHH----HHTT-SSSSEEEET
T ss_pred CCCCCCcHHHHHHHHHHHHhc---CCeEEEEEccCHHHH----HHcCCCCCCEEEEC
Confidence 677999997777776666554 455544544444433 3445433 5555
No 224
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=56.15 E-value=45 Score=25.72 Aligned_cols=39 Identities=10% Similarity=0.046 Sum_probs=32.5
Q ss_pred HHHHHcHHHHHHcCCEEEEEeCCC--------HHHHHHHHHHhCCce
Q 025522 117 DYLAAKKDVMDASGVALVLIGPGS--------VEQARTFSEQTKFKG 155 (251)
Q Consensus 117 ~~L~~~~~~~~~~gv~vVaVs~~~--------~~~~~~f~~~~~~pf 155 (251)
+...+...++++.|+.++.++... .+.++++.+..++.+
T Consensus 28 ~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~ 74 (132)
T TIGR01662 28 PEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVPI 74 (132)
T ss_pred CCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCCE
Confidence 455566778888999999999988 778888899988886
No 225
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=54.31 E-value=58 Score=23.93 Aligned_cols=52 Identities=10% Similarity=0.092 Sum_probs=38.8
Q ss_pred HHHHHHcCCEEEEEeCCCHH----HHHHHHHHhCCceEEEcCChhHHHHcCCcccc
Q 025522 123 KDVMDASGVALVLIGPGSVE----QARTFSEQTKFKGVYADPNHSSYEALSFVSGV 174 (251)
Q Consensus 123 ~~~~~~~gv~vVaVs~~~~~----~~~~f~~~~~~pfl~sDp~~~ly~alGl~~~~ 174 (251)
...+++..+.+|.|..|-.+ .+..+++++++|+++.+...++-++.|.....
T Consensus 20 ~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~s~~eLG~a~G~~~~~ 75 (82)
T PRK13602 20 VKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSMKKLGKACGIEVGA 75 (82)
T ss_pred HHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHCCCcCE
Confidence 44556677889999988653 55567899999996666778888888877643
No 226
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=53.76 E-value=81 Score=30.68 Aligned_cols=49 Identities=16% Similarity=0.208 Sum_probs=40.0
Q ss_pred HHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCceEEEcCC
Q 025522 113 RKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGVYADPN 161 (251)
Q Consensus 113 ~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pfl~sDp~ 161 (251)
+-.+..|.++..+|++.|+.+++...+..+.+.++++++++.-|+.+.+
T Consensus 51 ~Fl~esL~~L~~~L~~~G~~L~v~~G~p~~vl~~l~~~~~~~~V~~~~~ 99 (471)
T TIGR03556 51 AYLIGCLQELQQRYQQAGSQLLILQGDPVQLIPQLAQQLGAKAVYWNLD 99 (471)
T ss_pred HHHHHHHHHHHHHHHHCCCCeEEEECCHHHHHHHHHHHcCCCEEEEecc
Confidence 3456778888999999999999988777788999999988776766654
No 227
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=52.88 E-value=29 Score=30.86 Aligned_cols=28 Identities=14% Similarity=0.151 Sum_probs=21.8
Q ss_pred CCcEEEEEEccCCChhhHHHHHHHHHcH
Q 025522 96 DRKAVVAFARHFGCVLCRKRADYLAAKK 123 (251)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~ 123 (251)
+.+.+|+.|--.-||+|++.-.++.+..
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~ 143 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWV 143 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHh
Confidence 4566666667999999999998887654
No 228
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=52.86 E-value=85 Score=30.18 Aligned_cols=46 Identities=13% Similarity=0.013 Sum_probs=37.7
Q ss_pred HHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCceEEEcC
Q 025522 115 RADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGVYADP 160 (251)
Q Consensus 115 el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pfl~sDp 160 (251)
-+..|.++..+|++.|+.+++...+..+.+.++++++++.-|+.|.
T Consensus 76 l~esL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~i~~V~~~~ 121 (454)
T TIGR00591 76 MLGGLDEVANECERLIIPFHLLDGPPKELLPYFVDLHAAAAVVTDF 121 (454)
T ss_pred HHHHHHHHHHHHHHcCCceEEeecChHHHHHHHHHHcCCCEEEEec
Confidence 3447788899999999999999877778999999998877666664
No 229
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=51.94 E-value=58 Score=24.09 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=38.5
Q ss_pred HHHHHHcCCEEEEEeCCCH----HHHHHHHHHhCCceEEEcCChhHHHHcCCccc
Q 025522 123 KDVMDASGVALVLIGPGSV----EQARTFSEQTKFKGVYADPNHSSYEALSFVSG 173 (251)
Q Consensus 123 ~~~~~~~gv~vVaVs~~~~----~~~~~f~~~~~~pfl~sDp~~~ly~alGl~~~ 173 (251)
...++...+.+|.|..|-. ..+..+++.+++|+++.....++-++.|+..+
T Consensus 17 lkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~t~~eLG~A~G~~v~ 71 (82)
T PRK13601 17 LKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDTMKELGVMCGIDVG 71 (82)
T ss_pred HHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeCCHHHHHHHHCCccC
Confidence 3445566788999998865 35556788899999666777888888888764
No 230
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=51.42 E-value=68 Score=22.72 Aligned_cols=47 Identities=9% Similarity=0.092 Sum_probs=33.2
Q ss_pred HHHHHHcHHHHHHcCCEEEEE-eCCCHHHHHHHHHHhCCce-EEEcCCh
Q 025522 116 ADYLAAKKDVMDASGVALVLI-GPGSVEQARTFSEQTKFKG-VYADPNH 162 (251)
Q Consensus 116 l~~L~~~~~~~~~~gv~vVaV-s~~~~~~~~~f~~~~~~pf-l~sDp~~ 162 (251)
.....+....|++.|+.+..- ...+....-+++++.++++ ++.+.+.
T Consensus 14 ~~~a~~~~~~Lr~~g~~v~~d~~~~~~~~~~~~a~~~g~~~~iiig~~e 62 (91)
T cd00860 14 LDYAKEVAKKLSDAGIRVEVDLRNEKLGKKIREAQLQKIPYILVVGDKE 62 (91)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEECcch
Confidence 334445577788889988773 4445566777889999999 8777553
No 231
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=50.65 E-value=52 Score=25.00 Aligned_cols=50 Identities=8% Similarity=0.048 Sum_probs=38.6
Q ss_pred HHHHHHcCCEEEEEeCCCH----HHHHHHHHHhCCce-EEEcCChhHHHHcCCcc
Q 025522 123 KDVMDASGVALVLIGPGSV----EQARTFSEQTKFKG-VYADPNHSSYEALSFVS 172 (251)
Q Consensus 123 ~~~~~~~gv~vVaVs~~~~----~~~~~f~~~~~~pf-l~sDp~~~ly~alGl~~ 172 (251)
...++...+.+|.|+.|-+ +.+..+++++++|+ .|.....++-++.|...
T Consensus 25 ~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~~tk~eLG~a~Gk~~ 79 (99)
T PRK01018 25 IKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYEGSSVELGTLCGKPF 79 (99)
T ss_pred HHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCHHHHHHHhCCCC
Confidence 3445566789999998865 46667889999998 77777888988988653
No 232
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=50.56 E-value=37 Score=28.56 Aligned_cols=32 Identities=9% Similarity=0.331 Sum_probs=25.2
Q ss_pred eEEEEcCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025522 216 GIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 250 (251)
Q Consensus 216 g~fVid~ggg~I~~~h~~~~~~D~~~~~eIL~al~ 250 (251)
+++|+|++ |+|.|.+-+ .--..++.++++.+.
T Consensus 149 aivVlDk~-G~VkfvkeG--aLt~aevQ~Vi~ll~ 180 (184)
T COG3054 149 AVVVLDKD-GRVKFVKEG--ALTQAEVQQVIDLLQ 180 (184)
T ss_pred eEEEEcCC-CcEEEEecC--CccHHHHHHHHHHHH
Confidence 68899998 699999876 556677888877654
No 233
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=50.16 E-value=80 Score=24.69 Aligned_cols=61 Identities=7% Similarity=0.092 Sum_probs=48.1
Q ss_pred HHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHh-CCceEEEcCChhHHHHcCCcccc
Q 025522 113 RKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQT-KFKGVYADPNHSSYEALSFVSGV 174 (251)
Q Consensus 113 ~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~-~~pfl~sDp~~~ly~alGl~~~~ 174 (251)
..-...|+++.+++++.++.=++|..++.+.+++..+-. +++ +.-...-++.+.||+..+.
T Consensus 34 ~~S~~WL~~~~~~L~~l~AvGlVVnV~t~~~l~~Lr~lapgl~-l~P~sgddLa~rL~l~hYP 95 (105)
T TIGR03765 34 PASRQWLQQNAAALKSLGAVGLVVNVETAAALQRLRALAPGLP-LLPVSGDDLAERLGLRHYP 95 (105)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHcCCCc-ccCCCHHHHHHHhCCCccc
Confidence 345677888999999999999999999998888876653 333 6666777899999887753
No 234
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=49.64 E-value=46 Score=27.49 Aligned_cols=48 Identities=10% Similarity=0.194 Sum_probs=38.8
Q ss_pred cEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce
Q 025522 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG 155 (251)
Q Consensus 98 ~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf 155 (251)
..=+++|+..-|.-|.++++.| ++.|.+|=.+..++-+.+++ ++++|.
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~m-------k~~Gf~Vk~~~~~d~~alK~---~~gIp~ 72 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHM-------KANGFEVKVVETDDFLALKR---RLGIPY 72 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHH-------HhCCcEEEEeecCcHHHHHH---hcCCCh
Confidence 4457788899999999999876 57899999999998776664 567775
No 235
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=49.49 E-value=56 Score=24.88 Aligned_cols=57 Identities=21% Similarity=0.367 Sum_probs=41.8
Q ss_pred cCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCC----CHHHHHHHHHHhCCce-EEEcCChhHHHHcC
Q 025522 106 HFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG----SVEQARTFSEQTKFKG-VYADPNHSSYEALS 169 (251)
Q Consensus 106 ~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~----~~~~~~~f~~~~~~pf-l~sDp~~~ly~alG 169 (251)
..-|.-|++.+..| ++.|+.+-.|..- +.+++.++++..+..+ -+.+.....|+.++
T Consensus 3 ~~~C~t~rka~~~L-------~~~gi~~~~~d~~k~p~s~~el~~~l~~~~~~~~~lin~~~~~~k~l~ 64 (110)
T PF03960_consen 3 NPNCSTCRKALKWL-------EENGIEYEFIDYKKEPLSREELRELLSKLGNGPDDLINTRSKTYKELG 64 (110)
T ss_dssp -TT-HHHHHHHHHH-------HHTT--EEEEETTTS---HHHHHHHHHHHTSSGGGGB-TTSHHHHHTT
T ss_pred CCCCHHHHHHHHHH-------HHcCCCeEeehhhhCCCCHHHHHHHHHHhcccHHHHhcCccchHhhhh
Confidence 46799999887766 5677777777764 3479999999999888 66688899999999
No 236
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=49.29 E-value=46 Score=31.71 Aligned_cols=47 Identities=9% Similarity=0.121 Sum_probs=39.2
Q ss_pred HHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCceEEEcCC
Q 025522 115 RADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGVYADPN 161 (251)
Q Consensus 115 el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pfl~sDp~ 161 (251)
.+..|.++..+|++.|+.+++...+..+.+.++++++++.-|+.|.+
T Consensus 59 l~esL~~L~~~L~~~g~~L~v~~G~~~~vl~~L~~~~~~~~V~~~~~ 105 (429)
T TIGR02765 59 LLESLKDLRTSLRKLGSDLLVRSGKPEDVLPELIKELGVRTVFLHQE 105 (429)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHhCCCEEEEecc
Confidence 34678888899999999999988777788999999988776777754
No 237
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=49.20 E-value=33 Score=29.67 Aligned_cols=45 Identities=13% Similarity=0.150 Sum_probs=34.4
Q ss_pred ecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHH
Q 025522 81 YDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMD 127 (251)
Q Consensus 81 ~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~ 127 (251)
...++..+.+++. ..++.++.|.-.-||+|.+.++++.+.+-...
T Consensus 70 ~~~~~~~~~~G~~--~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~ 114 (244)
T COG1651 70 LTPDGKDVVLGNP--YAPVTVVEFFDYTCPYCKEAFPELKKKYIDDG 114 (244)
T ss_pred ecCCCCcccccCC--CCCceEEEEecCcCccHHHHHHHHHHHhhhcC
Confidence 4566777777776 34888888889999999999999988554443
No 238
>PRK10853 putative reductase; Provisional
Probab=48.18 E-value=43 Score=26.30 Aligned_cols=64 Identities=14% Similarity=0.208 Sum_probs=47.5
Q ss_pred EEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeC----CCHHHHHHHHHHhCCceEEEcCChhHHHHcCCcc
Q 025522 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP----GSVEQARTFSEQTKFKGVYADPNHSSYEALSFVS 172 (251)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~----~~~~~~~~f~~~~~~pfl~sDp~~~ly~alGl~~ 172 (251)
+.+|-...|.-|++.+..|.+ .|+.+..+-. =+.+.++.|.++.++. -+.......|+.+|...
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~-------~~i~~~~~d~~k~p~s~~eL~~~l~~~g~~-~l~n~~~~~~r~L~~~~ 69 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEA-------QGIDYRFHDYRVDGLDSELLQGFIDELGWE-ALLNTRGTTWRKLDETQ 69 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHH-------cCCCcEEeehccCCcCHHHHHHHHHHcCHH-HHHhcCCchHHhCCHhH
Confidence 568888999999998887755 4665555542 2558999999987744 45578888999988764
No 239
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=47.97 E-value=30 Score=28.13 Aligned_cols=35 Identities=11% Similarity=0.215 Sum_probs=30.0
Q ss_pred HcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce
Q 025522 121 AKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG 155 (251)
Q Consensus 121 ~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf 155 (251)
+...++++.|++++.||.+....++.+++..+++.
T Consensus 96 e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~ 130 (192)
T PF12710_consen 96 ELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDD 130 (192)
T ss_dssp HHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCc
Confidence 44555678899999999998899999999999985
No 240
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=47.86 E-value=19 Score=32.68 Aligned_cols=84 Identities=17% Similarity=0.218 Sum_probs=43.4
Q ss_pred cccCCCCCcEEecCCCCeEeCCCccC-CCcEEEEEEccCCChhhHHHHHHHHHc----HHHHHHcCCEEEEEeCCCHHHH
Q 025522 70 DTKNLLDTVKVYDVNGNAIPISDLWK-DRKAVVAFARHFGCVLCRKRADYLAAK----KDVMDASGVALVLIGPGSVEQA 144 (251)
Q Consensus 70 ~~g~~ap~f~l~d~~G~~v~ls~l~~-~~~vVLvF~R~~~Cp~C~~el~~L~~~----~~~~~~~gv~vVaVs~~~~~~~ 144 (251)
+..+.+|-|++.|.+|+++-...=-. +..+.++|+ |++++.++-+. .+++ ..+++|+.|+-+...++
T Consensus 70 ~kL~~VPVF~itn~~G~p~l~~~~~~~~~~v~~~F~-------s~~dA~~~L~~lk~~~p~~-~~~~kV~pvsL~~vY~l 141 (274)
T PF04278_consen 70 EKLAGVPVFTITNSQGEPVLVSGPDQGGKSVGLFFF-------SQQDAEAFLAQLKKSNPEL-ASGAKVVPVSLGKVYQL 141 (274)
T ss_dssp HHHTTSEEEEEE-TT--B-----TTS--SEEEEEES--------HHHHHHHHHHHHH-SSHH-HTT-EEEEEEHHHHHHH
T ss_pred HHhcCceEEEEECCCCCEEEeccCCCCCceEEEEEe-------cHHHHHHHHHHHhhhCccc-cCceEEEEecHHHHHHH
Confidence 45677999999999999986665311 234455554 77777665443 2233 67899999999877544
Q ss_pred HH-H-HHHhCCce-EEEcCC
Q 025522 145 RT-F-SEQTKFKG-VYADPN 161 (251)
Q Consensus 145 ~~-f-~~~~~~pf-l~sDp~ 161 (251)
.. . .+..++.| ++.|+.
T Consensus 142 ~~~~~~k~~~~~F~~vP~~~ 161 (274)
T PF04278_consen 142 AQENKKKPEGLQFRFVPDPK 161 (274)
T ss_dssp HHHTTT-TT-EEEEEE--HH
T ss_pred HHHhhcCCcCceEEEcCCHH
Confidence 22 1 13345667 776644
No 241
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=47.82 E-value=84 Score=25.87 Aligned_cols=61 Identities=5% Similarity=0.075 Sum_probs=48.8
Q ss_pred HHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHh-CCceEEEcCChhHHHHcCCcccc
Q 025522 113 RKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQT-KFKGVYADPNHSSYEALSFVSGV 174 (251)
Q Consensus 113 ~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~-~~pfl~sDp~~~ly~alGl~~~~ 174 (251)
..-...|+++.++|++.++.=++|..++.+.++...+-- +++ ++-...-++.+.||+..+.
T Consensus 72 ~~S~~WL~~~~~~L~~l~AvGlVVNV~t~~~L~~Lr~lapgl~-l~P~sgddLA~rL~l~HYP 133 (142)
T PF11072_consen 72 PLSRQWLQQNAEELKQLGAVGLVVNVATEAALQRLRQLAPGLP-LLPVSGDDLARRLGLSHYP 133 (142)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHcCCCe-ecCCCHHHHHHHhCCCccc
Confidence 445677888999999999999999999999888886653 333 6777778999999988753
No 242
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=46.67 E-value=39 Score=24.13 Aligned_cols=35 Identities=9% Similarity=0.149 Sum_probs=28.2
Q ss_pred ccceEEEEcCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025522 213 QQGGIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 250 (251)
Q Consensus 213 q~gg~fVid~ggg~I~~~h~~~~~~D~~~~~eIL~al~ 250 (251)
+.+|.|-+--+ |+++|..... +..|+.++|++.++
T Consensus 38 ~~~G~Fev~~~-g~~v~sk~~~--~~fp~~~~~~~~ir 72 (72)
T TIGR02174 38 PTTGAFEVTVN-GQLVWSKLRG--GGFPEPEELKQLIR 72 (72)
T ss_pred CCCcEEEEEEC-CEEEEEeccC--CCCCCHHHHHHhhC
Confidence 46789988666 5999998764 57899999999875
No 243
>PRK06683 hypothetical protein; Provisional
Probab=46.32 E-value=84 Score=23.14 Aligned_cols=51 Identities=10% Similarity=-0.020 Sum_probs=38.1
Q ss_pred HHHHHcCCEEEEEeCCCHH----HHHHHHHHhCCceEEEcCChhHHHHcCCcccc
Q 025522 124 DVMDASGVALVLIGPGSVE----QARTFSEQTKFKGVYADPNHSSYEALSFVSGV 174 (251)
Q Consensus 124 ~~~~~~gv~vVaVs~~~~~----~~~~f~~~~~~pfl~sDp~~~ly~alGl~~~~ 174 (251)
..++...+++|.|..|-.+ .+..+++.+++|+++.+...++-++.|+..+.
T Consensus 21 kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~t~~eLG~A~G~~~~~ 75 (82)
T PRK06683 21 EAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVESVRKLGKVAGIQVGA 75 (82)
T ss_pred HHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEECCHHHHHHHhCCcccE
Confidence 4455567899999988653 45566888999995556778899999987753
No 244
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=45.82 E-value=31 Score=22.30 Aligned_cols=33 Identities=18% Similarity=0.046 Sum_probs=20.6
Q ss_pred EEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCC
Q 025522 103 FARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (251)
Q Consensus 103 F~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~ 140 (251)
+|-..+||+|++-...|... ....+++-+..+.
T Consensus 3 ly~~~~~~~~~~~~~~l~~~-----~i~~~~~~~~~~~ 35 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEK-----GLPYELVPVDLGE 35 (71)
T ss_pred EEeCCCCccHHHHHHHHHHc-----CCCcEEEEeCCCC
Confidence 45567899999776666554 2234566665544
No 245
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=45.45 E-value=31 Score=23.70 Aligned_cols=52 Identities=10% Similarity=-0.078 Sum_probs=29.7
Q ss_pred EEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce--EEEcC
Q 025522 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG--VYADP 160 (251)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf--l~sDp 160 (251)
.+|-..|||+|++-...|.+..- ..+++-|...+. ..+|.+.+...- ++.|.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl-----~~e~~~v~~~~~--~~~~~~~np~~~vP~L~~~ 55 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI-----TVELREVELKNK--PAEMLAASPKGTVPVLVLG 55 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC-----CcEEEEeCCCCC--CHHHHHHCCCCCCCEEEEC
Confidence 35667899999988777765422 245555554432 245555544322 55544
No 246
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=45.25 E-value=36 Score=26.63 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=27.0
Q ss_pred HHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCc
Q 025522 120 AAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (251)
Q Consensus 120 ~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~p 154 (251)
.+...++++.|+.++++|..+.+.++...++.++.
T Consensus 83 ~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~ 117 (176)
T PF13419_consen 83 RELLERLKAKGIPLVIVSNGSRERIERVLERLGLD 117 (176)
T ss_dssp HHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHG
T ss_pred hhhhhhcccccceeEEeecCCcccccccccccccc
Confidence 33455666789999999988888888888887766
No 247
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=45.05 E-value=45 Score=27.46 Aligned_cols=42 Identities=12% Similarity=0.191 Sum_probs=32.6
Q ss_pred HHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCc-e-EEEc
Q 025522 118 YLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK-G-VYAD 159 (251)
Q Consensus 118 ~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~p-f-l~sD 159 (251)
+..+...+++++|++++.++-|+...+...+++.++. . ++++
T Consensus 131 ~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~~~v~a~ 174 (215)
T PF00702_consen 131 GAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFDSIVFAR 174 (215)
T ss_dssp THHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCSEEEEES
T ss_pred hhhhhhhhhhccCcceeeeecccccccccccccccccccccccc
Confidence 4555566778889999999988888888999998884 3 5554
No 248
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=41.56 E-value=95 Score=23.77 Aligned_cols=52 Identities=17% Similarity=0.208 Sum_probs=35.7
Q ss_pred CCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce
Q 025522 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG 155 (251)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf 155 (251)
++.-+++++-.++. -.++.+..+..+++|+.+|+|..++ .+.+++++.+...
T Consensus 42 ~~~dl~I~iS~SG~------t~e~i~~~~~a~~~g~~iI~IT~~~--~l~~~~~~~~~~~ 93 (119)
T cd05017 42 DRKTLVIAVSYSGN------TEETLSAVEQAKERGAKIVAITSGG--KLLEMAREHGVPV 93 (119)
T ss_pred CCCCEEEEEECCCC------CHHHHHHHHHHHHCCCEEEEEeCCc--hHHHHHHHcCCcE
Confidence 34556777767764 3444445555677899999999765 3778888877665
No 249
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=41.47 E-value=75 Score=22.22 Aligned_cols=53 Identities=15% Similarity=0.052 Sum_probs=29.9
Q ss_pred EEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCC--CHHHHHHHHHHhCCce-EEE
Q 025522 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG--SVEQARTFSEQTKFKG-VYA 158 (251)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~--~~~~~~~f~~~~~~pf-l~s 158 (251)
+..|+.-||.=-- .+.+...++ +.|-.+.++.-+ +.+.+..|++++|..+ ...
T Consensus 2 lD~rG~~CP~Pvl---~~kkal~~l-~~G~~l~V~~d~~~a~~di~~~~~~~G~~~~~~~ 57 (69)
T cd03420 2 VDACGLQCPGPIL---KLKKEIDKL-QDGEQLEVKASDPGFARDAQAWCKSTGNTLISLE 57 (69)
T ss_pred cccCCCcCCHHHH---HHHHHHHcC-CCCCEEEEEECCccHHHHHHHHHHHcCCEEEEEE
Confidence 3467888886221 112222222 234444444444 3478999999999887 444
No 250
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=40.29 E-value=1.2e+02 Score=20.87 Aligned_cols=46 Identities=7% Similarity=0.076 Sum_probs=32.8
Q ss_pred HHHHHHHcHHHHHHcCCEEEEEeCC-CHHHHHHHHHHhCCce-EEEcC
Q 025522 115 RADYLAAKKDVMDASGVALVLIGPG-SVEQARTFSEQTKFKG-VYADP 160 (251)
Q Consensus 115 el~~L~~~~~~~~~~gv~vVaVs~~-~~~~~~~f~~~~~~pf-l~sDp 160 (251)
......++..+|++.|+.+.....+ +....-.+++..++++ ++.+.
T Consensus 13 ~~~~a~~i~~~Lr~~g~~v~~~~~~~~~~~~~~~a~~~~~~~~i~i~~ 60 (91)
T cd00859 13 ALSEALELAEQLRDAGIKAEIDYGGRKLKKQFKYADRSGARFAVILGE 60 (91)
T ss_pred HHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHcCCCEEEEEcH
Confidence 3344555677888899988765543 5566777888899999 77764
No 251
>PF02514 CobN-Mg_chel: CobN/Magnesium Chelatase; InterPro: IPR003672 This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase. CobN may play a role in cobalt insertion reactions and is implicated in the conversion of precorrin-2 to cobyrinic acid in cobalamin biosynthesis []. Magnesium protoporphyrin chelatase is involved in chlorophyll biosynthesis as the third subunit of light-independent protochlorophyllide reductase in bacteria and plants [].; GO: 0009058 biosynthetic process
Probab=39.93 E-value=83 Score=34.26 Aligned_cols=72 Identities=13% Similarity=0.084 Sum_probs=49.8
Q ss_pred cEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCC----CHHHHHHHHHHhC---Cc-------e-EEEcC--
Q 025522 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG----SVEQARTFSEQTK---FK-------G-VYADP-- 160 (251)
Q Consensus 98 ~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~----~~~~~~~f~~~~~---~p-------f-l~sDp-- 160 (251)
.+.|+|+|..|..-+...+.+| ..+|+++|+.+|.|... ..+.++.|....+ +. | +...+
T Consensus 73 ~VgIlfyrs~~~~g~~~~vdaL---I~~LE~~G~nvipvf~~~~~~~~~~i~~~f~~~g~~~vDaIIn~~~f~l~~~~~~ 149 (1098)
T PF02514_consen 73 TVGILFYRSYWLSGNTAVVDAL---IRALEERGLNVIPVFCSSGPDSQEAIEDYFMDDGKPRVDAIINLTGFSLGGGPAG 149 (1098)
T ss_pred EEEEEeehhhhhcCCcHHHHHH---HHHHHHCCCeEEEEEecCccchHHHHHHHHhhcCCCCceEEEEcCccccCCCCcc
Confidence 5688999999988887777665 55667899999999954 3456777776611 11 2 22222
Q ss_pred -ChhHHHHcCCcc
Q 025522 161 -NHSSYEALSFVS 172 (251)
Q Consensus 161 -~~~ly~alGl~~ 172 (251)
...+++.+|+.-
T Consensus 150 ~~~~~L~~LnVPV 162 (1098)
T PF02514_consen 150 GAIELLKELNVPV 162 (1098)
T ss_pred hhHHHHHHCCCCE
Confidence 467888888865
No 252
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=39.78 E-value=49 Score=28.17 Aligned_cols=37 Identities=19% Similarity=0.350 Sum_probs=21.8
Q ss_pred CcEEEEEEccCCChhhHHHHHHH---HHcHHHHHHcCCEEEE
Q 025522 97 RKAVVAFARHFGCVLCRKRADYL---AAKKDVMDASGVALVL 135 (251)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L---~~~~~~~~~~gv~vVa 135 (251)
++.|+-| -...||+|...-+.| ....+.+ ..++.++-
T Consensus 38 ~~~VvEf-fdy~CphC~~~~~~l~~~~~~~~~~-~~~v~~~~ 77 (207)
T PRK10954 38 EPQVLEF-FSFYCPHCYQFEEVYHVSDNVKKKL-PEGTKMTK 77 (207)
T ss_pred CCeEEEE-eCCCCccHHHhcccccchHHHHHhC-CCCCeEEE
Confidence 4445444 489999999976644 3333333 34555543
No 253
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=39.11 E-value=68 Score=30.71 Aligned_cols=41 Identities=15% Similarity=0.306 Sum_probs=25.2
Q ss_pred EEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHH
Q 025522 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS 148 (251)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~ 148 (251)
|+.|-..|||+|.+--..|. +.|+.--.|-.+......++.
T Consensus 4 V~vys~~~Cp~C~~aK~~L~-------~~gi~~~~idi~~~~~~~~~~ 44 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFG-------ANDIPFTQISLDDDVKRAEFY 44 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHH-------HCCCCeEEEECCCChhHHHHH
Confidence 45567899999998766554 456665555555433333433
No 254
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=39.01 E-value=93 Score=24.17 Aligned_cols=49 Identities=16% Similarity=0.096 Sum_probs=38.1
Q ss_pred HHHHHcCCEEEEEeCCCHH----HHHHHHHHhCCce-EEEcCChhHHHHcCCcc
Q 025522 124 DVMDASGVALVLIGPGSVE----QARTFSEQTKFKG-VYADPNHSSYEALSFVS 172 (251)
Q Consensus 124 ~~~~~~gv~vVaVs~~~~~----~~~~f~~~~~~pf-l~sDp~~~ly~alGl~~ 172 (251)
..++...+.+|.|..|-++ .++.+++.+++|+ .|.+...++-++.|...
T Consensus 35 kalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~t~~eLG~A~Gk~~ 88 (108)
T PTZ00106 35 KALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAGNNNDLGTACGRHF 88 (108)
T ss_pred HHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCCCHHHHHHHhCCcc
Confidence 3445566899999988653 5667788899998 77788899999999764
No 255
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=38.72 E-value=53 Score=22.98 Aligned_cols=54 Identities=15% Similarity=0.096 Sum_probs=30.4
Q ss_pred EEEccCCChhhHHHHHHHHHcHHHHHHcCC--EEEEEeCCCHHHHHHHHHHhCCce-EEEc
Q 025522 102 AFARHFGCVLCRKRADYLAAKKDVMDASGV--ALVLIGPGSVEQARTFSEQTKFKG-VYAD 159 (251)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~~~~~gv--~vVaVs~~~~~~~~~f~~~~~~pf-l~sD 159 (251)
+..|+.-||.=--. +.+..+++ +.|- .|++-.+.+.+.+..|+++.+..+ ...+
T Consensus 2 lD~~G~~CP~P~i~---~k~~l~~l-~~G~~l~V~~dd~~s~~di~~~~~~~g~~~~~~~~ 58 (69)
T cd03423 2 LDTRGLRCPEPVMM---LHKKVRKM-KPGDTLLVLATDPSTTRDIPKFCTFLGHELLAQET 58 (69)
T ss_pred ccccCCcCCHHHHH---HHHHHHcC-CCCCEEEEEeCCCchHHHHHHHHHHcCCEEEEEEE
Confidence 35678888863222 11222222 2343 343334445579999999999887 4444
No 256
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=38.05 E-value=98 Score=21.95 Aligned_cols=45 Identities=9% Similarity=0.067 Sum_probs=31.4
Q ss_pred HHHHHHcHHHHHHcCCEEEEEeC-CCHHHHHHHHHHhCCce-EEEcC
Q 025522 116 ADYLAAKKDVMDASGVALVLIGP-GSVEQARTFSEQTKFKG-VYADP 160 (251)
Q Consensus 116 l~~L~~~~~~~~~~gv~vVaVs~-~~~~~~~~f~~~~~~pf-l~sDp 160 (251)
.....+...++++.|+.+..-.. .+....-+++++.+++| ++.+.
T Consensus 17 ~~~a~~~~~~Lr~~g~~v~~~~~~~~~~k~~~~a~~~g~~~~iiig~ 63 (94)
T cd00738 17 REYAQKLLNALLANGIRVLYDDRERKIGKKFREADLRGVPFAVVVGE 63 (94)
T ss_pred HHHHHHHHHHHHHCCCEEEecCCCcCHhHHHHHHHhCCCCEEEEECC
Confidence 33444456778889998877543 44566667788889999 77765
No 257
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=37.35 E-value=1e+02 Score=25.48 Aligned_cols=38 Identities=13% Similarity=0.258 Sum_probs=30.1
Q ss_pred HHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCc
Q 025522 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (251)
Q Consensus 117 ~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~p 154 (251)
+...+...+++++|+.+.+++.++.+.++...+..++.
T Consensus 95 ~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~ 132 (198)
T TIGR01428 95 PDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLD 132 (198)
T ss_pred CCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCCh
Confidence 34455566778889999999999988888888888763
No 258
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=37.04 E-value=33 Score=31.08 Aligned_cols=33 Identities=12% Similarity=0.048 Sum_probs=22.9
Q ss_pred HHHHHHcCCEEEEEeCCCH------------------H-HHHHHHHHhCCce
Q 025522 123 KDVMDASGVALVLIGPGSV------------------E-QARTFSEQTKFKG 155 (251)
Q Consensus 123 ~~~~~~~gv~vVaVs~~~~------------------~-~~~~f~~~~~~pf 155 (251)
..++.+.|+.++.|..+++ . .+..|.+..+|||
T Consensus 187 ~r~a~e~~i~l~~I~ld~~~~~~SI~d~~~~~~~~~~~~~l~~Yl~~fpfpY 238 (266)
T cd01460 187 LREAREQNVFVVFIIIDNPDNKQSILDIKVVSFKNDKSGVITPYLDEFPFPY 238 (266)
T ss_pred HHHHHHcCCeEEEEEEcCCCCCCCcccccccccCCCCccHHHHHHhcCCCCe
Confidence 4556677888888877765 1 5567777777777
No 259
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=36.86 E-value=80 Score=24.56 Aligned_cols=64 Identities=17% Similarity=0.238 Sum_probs=43.7
Q ss_pred EEEEccCCChhhHHHHHHHHHcHHHHHHcCCE--EEEEeCC--CHHHHHHHHHHhCCceEEEcCChhHHHHcCCcc
Q 025522 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVA--LVLIGPG--SVEQARTFSEQTKFKGVYADPNHSSYEALSFVS 172 (251)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~--vVaVs~~--~~~~~~~f~~~~~~pfl~sDp~~~ly~alGl~~ 172 (251)
+.+|-...|.-|++....|.+. |+. ++-+-.+ +.+.++.+.++.++. -+.......|+.++...
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~-------gi~~~~~d~~~~p~s~~eL~~~l~~~g~~-~l~n~~~~~~r~~~~~~ 69 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA-------GHEVEVRDLLTEPWTAETLRPFFGDLPVA-EWFNPAAPRVKSGEVVP 69 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------CCCcEEeehhcCCCCHHHHHHHHHHcCHH-HHHhcccHHHHhcCCCc
Confidence 4577789999999887766554 444 3333333 458999999976532 33456688899887764
No 260
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=36.72 E-value=1.5e+02 Score=20.70 Aligned_cols=54 Identities=22% Similarity=0.245 Sum_probs=30.4
Q ss_pred EEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCc-e-EEEcC
Q 025522 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK-G-VYADP 160 (251)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~p-f-l~sDp 160 (251)
+..|-..+||+|++-...|.+.- ...+++-|..+. ....+|.+.++.. . ++.|.
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~g-----i~y~~~~v~~~~-~~~~~~~~~~p~~~vP~l~~~ 57 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELE-----LDVILYPCPKGS-PKRDKFLEKGGKVQVPYLVDP 57 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcC-----CcEEEEECCCCh-HHHHHHHHhCCCCcccEEEeC
Confidence 34667789999998777775431 123445554332 2344566655432 3 56554
No 261
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=36.71 E-value=1.1e+02 Score=24.48 Aligned_cols=42 Identities=17% Similarity=0.191 Sum_probs=29.4
Q ss_pred HHHHcHHHHHHcCCEEEEEeCCCH---H------------HHHHHHHHhCCce--EEEc
Q 025522 118 YLAAKKDVMDASGVALVLIGPGSV---E------------QARTFSEQTKFKG--VYAD 159 (251)
Q Consensus 118 ~L~~~~~~~~~~gv~vVaVs~~~~---~------------~~~~f~~~~~~pf--l~sD 159 (251)
+..+...++++.|..++.++-=+. . ...+|++++++|| |+.-
T Consensus 28 ~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~~ 86 (126)
T TIGR01689 28 AVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYVG 86 (126)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCceEEeC
Confidence 333445555678999988885432 2 6688999999999 7754
No 262
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=36.16 E-value=54 Score=26.66 Aligned_cols=31 Identities=23% Similarity=0.271 Sum_probs=23.8
Q ss_pred CCccccceEEEEcCCCCeEEEEEeCCCCCCCC
Q 025522 209 RGGWQQGGIIVAGPGKSNISYIHRDKEAGDDP 240 (251)
Q Consensus 209 g~~~q~gg~fVid~ggg~I~~~h~~~~~~D~~ 240 (251)
||....-|.|.-++.||.|.|.|.++. +.|+
T Consensus 89 GD~V~f~GeYe~n~kggvIHWTH~dp~-~~h~ 119 (131)
T PF11948_consen 89 GDQVEFYGEYEWNPKGGVIHWTHHDPR-GRHP 119 (131)
T ss_pred CCEEEEEEEEEECCCCCEEEeeccCCC-CCCC
Confidence 444567799999988899999999854 4454
No 263
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=35.56 E-value=19 Score=25.88 Aligned_cols=35 Identities=14% Similarity=0.252 Sum_probs=27.1
Q ss_pred ccceEEEEcCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025522 213 QQGGIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 250 (251)
Q Consensus 213 q~gg~fVid~ggg~I~~~h~~~~~~D~~~~~eIL~al~ 250 (251)
..+|.|-+.-+ |+++|.... .+..|+.++|+++++
T Consensus 40 ~~~G~FEV~v~-g~lI~SK~~--~g~fP~~~~i~~~I~ 74 (76)
T PF10262_consen 40 GSTGAFEVTVN-GELIFSKLE--SGRFPDPDEIVQLIR 74 (76)
T ss_dssp ESTT-EEEEET-TEEEEEHHH--HTSSS-HHHHHHHHH
T ss_pred ccCCEEEEEEc-cEEEEEehh--cCCCCCHHHHHHHHh
Confidence 45789988877 699998876 558899999999886
No 264
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=35.39 E-value=1.2e+02 Score=21.73 Aligned_cols=47 Identities=9% Similarity=0.021 Sum_probs=31.2
Q ss_pred HHHHHHHcHHHHHHcCCEEEEEeC-CCHHHHHHHHHHhCCce-EEEcCC
Q 025522 115 RADYLAAKKDVMDASGVALVLIGP-GSVEQARTFSEQTKFKG-VYADPN 161 (251)
Q Consensus 115 el~~L~~~~~~~~~~gv~vVaVs~-~~~~~~~~f~~~~~~pf-l~sDp~ 161 (251)
......++..+|++.|+.+..-.. .+....-+++++.++|| ++...+
T Consensus 16 ~~~~a~~la~~Lr~~g~~v~~d~~~~~l~k~i~~a~~~g~~~~iiiG~~ 64 (94)
T cd00861 16 QQELAEKLYAELQAAGVDVLLDDRNERPGVKFADADLIGIPYRIVVGKK 64 (94)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCcccchhHHHhcCCCEEEEECCc
Confidence 334444567778888999876433 34445556778889999 776644
No 265
>PF14968 CCDC84: Coiled coil protein 84
Probab=35.31 E-value=8.1 Score=36.22 Aligned_cols=17 Identities=24% Similarity=0.503 Sum_probs=14.1
Q ss_pred ccCCChhhHHHHHHHHH
Q 025522 105 RHFGCVLCRKRADYLAA 121 (251)
Q Consensus 105 R~~~Cp~C~~el~~L~~ 121 (251)
+.+||++|-.++.+...
T Consensus 57 ~~fWC~fC~~ev~~~~s 73 (336)
T PF14968_consen 57 NRFWCVFCDCEVREHDS 73 (336)
T ss_pred ceeEeeCccchhhhccc
Confidence 46899999999998744
No 266
>PRK07714 hypothetical protein; Provisional
Probab=34.98 E-value=1.5e+02 Score=22.38 Aligned_cols=50 Identities=8% Similarity=-0.016 Sum_probs=36.0
Q ss_pred HHHHHHcCCEEEEEeCCCH----HHHHHHHHHhCCceEEEcCChhHHHHcCCcc
Q 025522 123 KDVMDASGVALVLIGPGSV----EQARTFSEQTKFKGVYADPNHSSYEALSFVS 172 (251)
Q Consensus 123 ~~~~~~~gv~vVaVs~~~~----~~~~~f~~~~~~pfl~sDp~~~ly~alGl~~ 172 (251)
.+.++...+.+|.+..|-. +.+..+++.+++|+++.....++-+++|...
T Consensus 27 ~~al~~g~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~~sk~eLG~a~Gk~~ 80 (100)
T PRK07714 27 LKEVRSGKAKLVLLSEDASVNTTKKITDKCTYYNVPMRKVENRQQLGHAIGKDE 80 (100)
T ss_pred HHHHHhCCceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEeCCHHHHHHHhCCCc
Confidence 3455556688999998755 3555667788999844567788888888654
No 267
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=34.93 E-value=1.7e+02 Score=24.35 Aligned_cols=42 Identities=14% Similarity=0.156 Sum_probs=31.0
Q ss_pred HHcHHHHHHcCCEEEEEeCCCH-HHHHHHHHHhCCce-EEEcCC
Q 025522 120 AAKKDVMDASGVALVLIGPGSV-EQARTFSEQTKFKG-VYADPN 161 (251)
Q Consensus 120 ~~~~~~~~~~gv~vVaVs~~~~-~~~~~f~~~~~~pf-l~sDp~ 161 (251)
.+..+++++.|++|..|+.++. +.+++.++.++=.| ...|++
T Consensus 126 ~~~~~~l~~~~I~v~~IgiG~~~~~L~~ia~~tgG~~~~~~~~~ 169 (183)
T cd01453 126 YETIDKLKKENIRVSVIGLSAEMHICKEICKATNGTYKVILDET 169 (183)
T ss_pred HHHHHHHHHcCcEEEEEEechHHHHHHHHHHHhCCeeEeeCCHH
Confidence 3446667788999988888754 56888888888777 666653
No 268
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=34.51 E-value=52 Score=22.81 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=14.7
Q ss_pred EEEccCCChhhHHHHHHHHH
Q 025522 102 AFARHFGCVLCRKRADYLAA 121 (251)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~ 121 (251)
.+|-...||+|++-...|.+
T Consensus 3 ~Ly~~~~~p~c~kv~~~L~~ 22 (77)
T cd03040 3 TLYQYKTCPFCCKVRAFLDY 22 (77)
T ss_pred EEEEcCCCHHHHHHHHHHHH
Confidence 45566889999988766644
No 269
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=34.51 E-value=1.3e+02 Score=24.53 Aligned_cols=98 Identities=12% Similarity=0.077 Sum_probs=54.6
Q ss_pred CCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce--EEEcCChhHHHHcCCccc
Q 025522 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG--VYADPNHSSYEALSFVSG 173 (251)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf--l~sDp~~~ly~alGl~~~ 173 (251)
+.++|++-|-+.|-|.|...=.-|.+..+++++ -+.+.+|-.+......++-+-+ -|+ ++-=.++.+.=.||-...
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~-~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnkhm~vD~Gtgnn 96 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKN-FAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNKHMMVDFGTGNN 96 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTEEEEEESSSSSS
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhc-ceEEEEEEcccchhhhcccccC-CCeEEEEEecCeEEEEEecCCCc
Confidence 568999999999999999776667777776643 3777788777654433333332 454 332234444334554443
Q ss_pred ccccc---CchhhHHHHHHHhhhhh
Q 025522 174 VLVTF---TPKAGLKIIQSYMEGYR 195 (251)
Q Consensus 174 ~~~~~---~P~~~~~~~~~~~~g~r 195 (251)
....+ +-+.....+..+.+|.+
T Consensus 97 nKin~~~~~kqe~iDiie~iyrga~ 121 (133)
T PF02966_consen 97 NKINWAFEDKQEFIDIIETIYRGAR 121 (133)
T ss_dssp SSBCS--SCHHHHHHHHHHHHHHHH
T ss_pred cEEEEEcCcHHHHHHHHHHHHHHhh
Confidence 22112 12333444455544444
No 270
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=34.29 E-value=29 Score=26.35 Aligned_cols=28 Identities=25% Similarity=0.541 Sum_probs=19.6
Q ss_pred cCCChhhHHHHHHHHHcHHHHHHcCCEEEEE
Q 025522 106 HFGCVLCRKRADYLAAKKDVMDASGVALVLI 136 (251)
Q Consensus 106 ~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaV 136 (251)
-..||+|+.++..+.+... ...++.+.+
T Consensus 4 Dg~C~lC~~~~~~l~~~d~---~~~l~~~~~ 31 (114)
T PF04134_consen 4 DGDCPLCRREVRFLRRRDR---GGRLRFVDI 31 (114)
T ss_pred CCCCHhHHHHHHHHHhcCC---CCCEEEEEC
Confidence 4689999999999988721 133555555
No 271
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=34.26 E-value=1.4e+02 Score=24.33 Aligned_cols=41 Identities=12% Similarity=0.101 Sum_probs=29.8
Q ss_pred EEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCH
Q 025522 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (251)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~ 141 (251)
|.||--+-||+|-.-.+.|.++..+.....++...+.....
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~~ 42 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRPD 42 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSSTH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccccc
Confidence 56777999999999999999988877334444555554443
No 272
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=34.14 E-value=1.6e+02 Score=20.26 Aligned_cols=55 Identities=13% Similarity=0.172 Sum_probs=33.9
Q ss_pred EEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCH--HHHHHHHHHhCCce-EEEc
Q 025522 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV--EQARTFSEQTKFKG-VYAD 159 (251)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~--~~~~~f~~~~~~pf-l~sD 159 (251)
.+..|+.-||..--.+..- ..++ ..|-.+.++.-+.. +.+..|++++|..+ -..+
T Consensus 2 ~lD~rg~~CP~Pll~~~~~---l~~l-~~G~~l~v~~d~~~~~~di~~~~~~~g~~~~~~~~ 59 (70)
T PF01206_consen 2 TLDLRGLSCPMPLLKAKKA---LKEL-PPGEVLEVLVDDPAAVEDIPRWCEENGYEVVEVEE 59 (70)
T ss_dssp EEECSS-STTHHHHHHHHH---HHTS-GTT-EEEEEESSTTHHHHHHHHHHHHTEEEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHH---HHhc-CCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEEE
Confidence 3577899999986554432 1111 24555655555543 78999999999886 4433
No 273
>TIGR02766 crypt_chrom_pln cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
Probab=34.12 E-value=1.1e+02 Score=29.74 Aligned_cols=46 Identities=17% Similarity=0.151 Sum_probs=36.4
Q ss_pred HHHHHHcHHHHHHcCCEEEEEeCC-CHHHHHHHHHHhCCceEEEcCC
Q 025522 116 ADYLAAKKDVMDASGVALVLIGPG-SVEQARTFSEQTKFKGVYADPN 161 (251)
Q Consensus 116 l~~L~~~~~~~~~~gv~vVaVs~~-~~~~~~~f~~~~~~pfl~sDp~ 161 (251)
+..|.++..+|++.|..++++..+ ..+.+.+.+++++++-|+.+.+
T Consensus 50 ~~sL~~L~~~L~~~G~~L~v~~~g~~~~~l~~l~~~~~i~~v~~~~~ 96 (475)
T TIGR02766 50 KQSLAHLDQSLRSLGTCLVTIRSTDTVAALLDCVRSTGATRLFFNHL 96 (475)
T ss_pred HHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHHHcCCCEEEEecc
Confidence 468888899999999999988544 4578889999988776666543
No 274
>PLN02311 chalcone isomerase
Probab=33.71 E-value=89 Score=28.46 Aligned_cols=78 Identities=12% Similarity=0.049 Sum_probs=45.9
Q ss_pred CcccccccccCCceeeecccCCCCceeeccCCCCCCC-ccccCCcccccCCCCcceeecccCCCCCC--CCccccCCCCC
Q 025522 1 MAISLSTALSPNTTVRFNRLTNPAPTRILPNQSPLWR-PRHWNKTLKLSPRRPSHVIASAVSESPPS--VSEDTKNLLDT 77 (251)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~ap~ 77 (251)
||.|++.|-. .+.++--.+.|+-++..+|.-+.+.. |.-.+.-..--.+-++.+-|+..|.++.. ..+.+|-..|+
T Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ep~TgV~Fp~ 79 (271)
T PLN02311 1 LRMSCRNTDN-AESIYHFPGKSPNRVSVLQTGNTVSDSPNSLLKHRHCNEISRVIVKSAAFSVGSAEYAEETATSVKFQR 79 (271)
T ss_pred CCcccccchh-hhheeecCCCCCCCceEcccCCcccccccccccccccCcccceeeeccccccCcccceecCCcCCcCCc
Confidence 5666777766 66666666888889999998777766 43332222222333333446665555433 34566666665
Q ss_pred cE
Q 025522 78 VK 79 (251)
Q Consensus 78 f~ 79 (251)
.-
T Consensus 80 ~v 81 (271)
T PLN02311 80 SL 81 (271)
T ss_pred cc
Confidence 43
No 275
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=33.62 E-value=2.3e+02 Score=23.18 Aligned_cols=58 Identities=14% Similarity=0.051 Sum_probs=39.4
Q ss_pred CCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCc
Q 025522 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (251)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~p 154 (251)
..++||+-|-+.|.|.|-..=.-|.+..+.+.+. +.|..|-.++.....++.+-+..+
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf-a~IylvdideV~~~~~~~~l~~p~ 79 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF-AVIYLVDIDEVPDFVKMYELYDPP 79 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc-eEEEEEecchhhhhhhhhcccCCc
Confidence 4689999999999999998877777777776433 556666666544444443333333
No 276
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=32.32 E-value=79 Score=27.33 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=32.1
Q ss_pred HHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce
Q 025522 118 YLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG 155 (251)
Q Consensus 118 ~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf 155 (251)
...++...++++|.+++.||-+-..-++.++++.++.+
T Consensus 81 ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~ 118 (212)
T COG0560 81 GAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDY 118 (212)
T ss_pred cHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCch
Confidence 34455667789999999999998889999999999886
No 277
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=32.04 E-value=60 Score=24.43 Aligned_cols=52 Identities=8% Similarity=0.013 Sum_probs=31.8
Q ss_pred CCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce--EEEcCChhHH
Q 025522 107 FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG--VYADPNHSSY 165 (251)
Q Consensus 107 ~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf--l~sDp~~~ly 165 (251)
-.||+|++-.-.|.+. ....+++-|...+. -+.|.+.+.+.- ++.|.+..++
T Consensus 20 g~cpf~~rvrl~L~eK-----gi~ye~~~vd~~~~--p~~~~~~nP~g~vPvL~~~~~~i~ 73 (91)
T cd03061 20 GNCPFCQRLFMVLWLK-----GVVFNVTTVDMKRK--PEDLKDLAPGTQPPFLLYNGEVKT 73 (91)
T ss_pred CCChhHHHHHHHHHHC-----CCceEEEEeCCCCC--CHHHHHhCCCCCCCEEEECCEEec
Confidence 5799999998888664 22345566655543 244666555433 7777554443
No 278
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=31.92 E-value=1.9e+02 Score=27.06 Aligned_cols=33 Identities=12% Similarity=0.025 Sum_probs=22.7
Q ss_pred eEEEEcCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025522 216 GIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 250 (251)
Q Consensus 216 g~fVid~ggg~I~~~h~~~~~~D~~~~~eIL~al~ 250 (251)
|-+++|.+ .-.+.+.......+..+++++.+++
T Consensus 160 GFr~l~~~--~~~l~~l~~~~~~~i~~~~~~~~l~ 192 (329)
T PF15632_consen 160 GFRVLDES--RDELDALFEPDSRRISLDELLAALQ 192 (329)
T ss_pred eEEEEccC--cchHHHhcCCCcceeCHHHHHHHHh
Confidence 67888854 3344444456777888889988875
No 279
>PHA00159 endonuclease I
Probab=31.92 E-value=64 Score=26.58 Aligned_cols=47 Identities=11% Similarity=-0.001 Sum_probs=30.9
Q ss_pred cCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCC------CHHHHHHHHHHhCCce
Q 025522 106 HFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG------SVEQARTFSEQTKFKG 155 (251)
Q Consensus 106 ~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~------~~~~~~~f~~~~~~pf 155 (251)
+.|-+--|.-+..+++.++++ .+++|.-+.- +.-.-.+||+++||.|
T Consensus 68 G~w~~ddR~K~lli~eQ~P~l---diR~VFs~s~~klyKgSkTtYa~Wc~khG~~~ 120 (148)
T PHA00159 68 GLWDSDDRKKHLLIREQYPEL---DIRFVFSSSRTKLYKGSPTSYAEWCEKHGILF 120 (148)
T ss_pred ccCChHHHHHHHHHHHHCCCc---cEEEEEecCCchhhcCCCCcHHHHHHHcCcch
Confidence 556566666666677777765 4666654433 3345678999999876
No 280
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=31.36 E-value=2.4e+02 Score=21.63 Aligned_cols=47 Identities=11% Similarity=0.068 Sum_probs=33.1
Q ss_pred HHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce-EEEcCC
Q 025522 115 RADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG-VYADPN 161 (251)
Q Consensus 115 el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf-l~sDp~ 161 (251)
......++..++++.|+.+..-...+....-+++++.+++| ++..++
T Consensus 40 ~~~~a~~la~~LR~~gi~v~~d~~~sl~kqlk~A~k~g~~~~iiiG~~ 87 (121)
T cd00858 40 LVEIAKEISEELRELGFSVKYDDSGSIGRRYARQDEIGTPFCVTVDFD 87 (121)
T ss_pred HHHHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHhHhcCCCEEEEECcC
Confidence 33444456777888999887632256666777888999999 777654
No 281
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=31.28 E-value=1.4e+02 Score=24.86 Aligned_cols=57 Identities=11% Similarity=0.143 Sum_probs=38.1
Q ss_pred HHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCC--ce--EEEcCChhHHHHcC
Q 025522 113 RKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF--KG--VYADPNHSSYEALS 169 (251)
Q Consensus 113 ~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~--pf--l~sDp~~~ly~alG 169 (251)
.+.+..+.+....|.++|+.||+-.....+..+++..+.-- .| ||.|-..+...+=+
T Consensus 57 ~e~~rr~~~~A~ll~~~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD 117 (156)
T PF01583_consen 57 EENIRRIAEVAKLLADQGIIVIVAFISPYREDREWARELIPNERFIEVYVDCPLEVCRKRD 117 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhC
Confidence 35677777788888999998887777766777777666422 46 99998877766644
No 282
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=31.22 E-value=1.3e+02 Score=24.85 Aligned_cols=36 Identities=11% Similarity=0.104 Sum_probs=28.6
Q ss_pred HHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce
Q 025522 120 AAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG 155 (251)
Q Consensus 120 ~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf 155 (251)
.+....++++|..++.|+.+....++.++++.++..
T Consensus 93 ~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~ 128 (202)
T TIGR01490 93 RDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDN 128 (202)
T ss_pred HHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcc
Confidence 334455678899999999888888899999888764
No 283
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=31.20 E-value=91 Score=24.93 Aligned_cols=38 Identities=11% Similarity=0.070 Sum_probs=29.3
Q ss_pred HHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce
Q 025522 118 YLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG 155 (251)
Q Consensus 118 ~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf 155 (251)
.+.+...++++.|..++.||.+....++.+++.+++..
T Consensus 77 g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~ 114 (177)
T TIGR01488 77 GARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDD 114 (177)
T ss_pred CHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCch
Confidence 34445566778899999999888888888888887763
No 284
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=31.01 E-value=64 Score=21.85 Aligned_cols=20 Identities=20% Similarity=0.006 Sum_probs=14.8
Q ss_pred EEccCCChhhHHHHHHHHHc
Q 025522 103 FARHFGCVLCRKRADYLAAK 122 (251)
Q Consensus 103 F~R~~~Cp~C~~el~~L~~~ 122 (251)
.|-..+||+|++-...|.+.
T Consensus 3 ly~~~~~~~~~~v~~~l~~~ 22 (73)
T cd03059 3 LYSGPDDVYSHRVRIVLAEK 22 (73)
T ss_pred EEECCCChhHHHHHHHHHHc
Confidence 45677899999987776443
No 285
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=30.17 E-value=81 Score=29.55 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=33.8
Q ss_pred CChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCceEEEc
Q 025522 108 GCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGVYAD 159 (251)
Q Consensus 108 ~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pfl~sD 159 (251)
||.+.+.++..+.+.. .+++|++|.--+.+.+++++++++++ .|.|
T Consensus 10 G~~~G~~h~~al~~~~-----~~~eLvaV~d~~~erA~~~A~~~gi~-~y~~ 55 (343)
T TIGR01761 10 GTRFGQFYLAAFAAAP-----ERFELAGILAQGSERSRALAHRLGVP-LYCE 55 (343)
T ss_pred eHHHHHHHHHHHHhCC-----CCcEEEEEEcCCHHHHHHHHHHhCCC-ccCC
Confidence 4456666666665432 16999999999999999999998876 4444
No 286
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=29.92 E-value=1e+02 Score=22.55 Aligned_cols=52 Identities=10% Similarity=0.111 Sum_probs=37.4
Q ss_pred HcHHHHHHcCCEEEEEeCCCH----HH-HHHHHHHhCCceEEEcCChhHHHHcCCcc
Q 025522 121 AKKDVMDASGVALVLIGPGSV----EQ-ARTFSEQTKFKGVYADPNHSSYEALSFVS 172 (251)
Q Consensus 121 ~~~~~~~~~gv~vVaVs~~~~----~~-~~~f~~~~~~pfl~sDp~~~ly~alGl~~ 172 (251)
+....++...+.+|.+..|-. .. +..+++++++|+++.....++-+++|...
T Consensus 22 ~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~s~~eLG~~~g~~~ 78 (95)
T PF01248_consen 22 EVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVPSKEELGRACGKKR 78 (95)
T ss_dssp HHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEESHHHHHHHHTTSSS
T ss_pred HHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEECCHHHHHHHHCCCC
Confidence 334555566788888887743 24 66799999999955555578888888775
No 287
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=29.75 E-value=1.3e+02 Score=29.40 Aligned_cols=66 Identities=12% Similarity=0.036 Sum_probs=50.1
Q ss_pred cCCCCCcEEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCC
Q 025522 72 KNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (251)
Q Consensus 72 g~~ap~f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~ 140 (251)
.+.+..+.+.-.+|+.|++.+|.....+||+ +----+|.+-+...+....+|.+.||-||-|..+.
T Consensus 273 ee~L~rL~v~l~~~~~v~l~~LRg~~RvvIv---AG~~e~v~~al~~ae~~r~~L~~r~VlvVPv~~~~ 338 (453)
T PLN03098 273 DETLSRLPVRLSTNRIVELVQLRDITRPVIL---AGTKESVTLAMQKAERYRTELLKRGVLLIPVVWGE 338 (453)
T ss_pred hhhhccceEeccCCCEEeHHHhcCcceEEEE---ECCHHHHHHHHHHhHHHHHHHHHcCcEEEEEecCC
Confidence 3555666666567889999999555454443 23337889999999999999999999999998763
No 288
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=29.66 E-value=89 Score=27.46 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=31.6
Q ss_pred HHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce--EEE
Q 025522 119 LAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG--VYA 158 (251)
Q Consensus 119 L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf--l~s 158 (251)
+.++-..|+++|++|+.||-+=...+.--+++.++|+ +|+
T Consensus 93 i~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yA 134 (227)
T KOG1615|consen 93 IRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYA 134 (227)
T ss_pred HHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhh
Confidence 3445567789999999999998777777778889997 554
No 289
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=28.96 E-value=1.9e+02 Score=20.77 Aligned_cols=47 Identities=9% Similarity=0.092 Sum_probs=32.0
Q ss_pred HHHHHH-HcHHHHHHcCCEEEEEeC-CCHHHHHHHHHHhCCce-EEEcCC
Q 025522 115 RADYLA-AKKDVMDASGVALVLIGP-GSVEQARTFSEQTKFKG-VYADPN 161 (251)
Q Consensus 115 el~~L~-~~~~~~~~~gv~vVaVs~-~~~~~~~~f~~~~~~pf-l~sDp~ 161 (251)
++.++. ++...|.+.|+.+..-.. .+....-.+++..++|| ++..++
T Consensus 13 ~~~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g~p~~iiiG~~ 62 (94)
T PF03129_consen 13 EIIEYAQELANKLRKAGIRVELDDSDKSLGKQIKYADKLGIPFIIIIGEK 62 (94)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTTESEEEEEEHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcCCeEEEEECch
Confidence 344443 468888999987777653 44455566778889999 776543
No 290
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=28.89 E-value=2.4e+02 Score=22.28 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=37.7
Q ss_pred HHHHHHcCCEEEEEeCCC-H----HHHHHHHHHhCCceEEEcCChhHHHHcCCcc
Q 025522 123 KDVMDASGVALVLIGPGS-V----EQARTFSEQTKFKGVYADPNHSSYEALSFVS 172 (251)
Q Consensus 123 ~~~~~~~gv~vVaVs~~~-~----~~~~~f~~~~~~pfl~sDp~~~ly~alGl~~ 172 (251)
...+++..+.+|.|..|- + ..+..+++++++|+++.....++-++.|...
T Consensus 39 ~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~tk~eLG~a~Gk~~ 93 (122)
T PRK04175 39 TKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPSKKDLGKAAGLEV 93 (122)
T ss_pred HHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCHHHHHHHhCCCC
Confidence 344555568899998875 2 3556678999999977777889999999863
No 291
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=27.97 E-value=1.4e+02 Score=29.63 Aligned_cols=61 Identities=10% Similarity=0.184 Sum_probs=38.6
Q ss_pred CCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce---EEEcCC
Q 025522 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG---VYADPN 161 (251)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf---l~sDp~ 161 (251)
++|+-+-.|=..+||+|..-...+.+...+.. ++..-.|-.... .+.++++++-. ++.|-+
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~--~i~~~~i~~~~~---~~~~~~~~v~~vP~~~i~~~ 538 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP--NVEAEMIDVSHF---PDLKDEYGIMSVPAIVVDDQ 538 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC--CceEEEEECccc---HHHHHhCCceecCEEEECCE
Confidence 36776767679999999987777766555422 566666655543 24444555443 666643
No 292
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=27.76 E-value=94 Score=29.38 Aligned_cols=43 Identities=16% Similarity=0.233 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCC
Q 025522 111 LCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (251)
Q Consensus 111 ~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~ 153 (251)
.|..-..++.+....+.+.+.+|++|..-+.+.+++|++++++
T Consensus 13 g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~ 55 (351)
T KOG2741|consen 13 GAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNI 55 (351)
T ss_pred ehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCC
Confidence 3556666666655555568999999999899999999999999
No 293
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=27.71 E-value=1.7e+02 Score=28.80 Aligned_cols=53 Identities=11% Similarity=0.063 Sum_probs=37.9
Q ss_pred cCCCcEEEEEEccC-CChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCH--HHHHHHH
Q 025522 94 WKDRKAVVAFARHF-GCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV--EQARTFS 148 (251)
Q Consensus 94 ~~~~~vVLvF~R~~-~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~--~~~~~f~ 148 (251)
+++++++|+-=|++ -.|.-|++. ...+.+.++++|-.|++|++|++ +.+..+.
T Consensus 464 lEeR~Ilv~DEWAADQDPaFRR~F--Y~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll 519 (546)
T COG4615 464 LEERDILVLDEWAADQDPAFRREF--YQVLLPLLKEQGKTIFAISHDDHYFIHADRLL 519 (546)
T ss_pred HhhCCeEEeehhhccCChHHHHHH--HHHHhHHHHHhCCeEEEEecCchhhhhHHHHH
Confidence 35678887776664 566666654 34567888999999999999998 3444443
No 294
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=27.56 E-value=1.9e+02 Score=26.77 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=33.6
Q ss_pred HHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCc
Q 025522 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (251)
Q Consensus 117 ~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~p 154 (251)
+...+...+++++|+.+..++.+..+.+.+..++.++.
T Consensus 149 PgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd 186 (301)
T TIGR01684 149 PRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLD 186 (301)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCC
Confidence 56677788899999999999999998899999999988
No 295
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=27.52 E-value=1.9e+02 Score=19.58 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=29.8
Q ss_pred EEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCC--HHHHHHHHHHhCCce-EEEc
Q 025522 103 FARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS--VEQARTFSEQTKFKG-VYAD 159 (251)
Q Consensus 103 F~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~--~~~~~~f~~~~~~pf-l~sD 159 (251)
..|+.-||.=-.. +.+...++ +.|-.+.++..+. ...+..|+++.++.+ ..-+
T Consensus 3 D~rg~~CP~Pl~~---~~~~l~~l-~~g~~l~v~~d~~~~~~~i~~~~~~~g~~~~~~~~ 58 (69)
T cd00291 3 DLRGLPCPLPVLK---TKKALEKL-KSGEVLEVLLDDPGAVEDIPAWAKETGHEVLEVEE 58 (69)
T ss_pred cccCCcCCHHHHH---HHHHHhcC-CCCCEEEEEecCCcHHHHHHHHHHHcCCEEEEEEE
Confidence 4567777752111 11112222 2455555555443 579999999999987 4444
No 296
>KOG4530 consensus Predicted flavoprotein [General function prediction only]
Probab=27.28 E-value=76 Score=26.95 Aligned_cols=29 Identities=14% Similarity=0.269 Sum_probs=26.0
Q ss_pred cCCCcEEEEEEccCCChhhHHHHHHHHHc
Q 025522 94 WKDRKAVVAFARHFGCVLCRKRADYLAAK 122 (251)
Q Consensus 94 ~~~~~vVLvF~R~~~Cp~C~~el~~L~~~ 122 (251)
|.++|.+++-|-+++-.-|+.+++++.-.
T Consensus 116 W~gKPalivSyGGhGGg~c~~qL~~v~~f 144 (199)
T KOG4530|consen 116 WAGKPALIVSYGGHGGGRCQYQLRQVGVF 144 (199)
T ss_pred hcCCceEEEEecCCCCchHHHHHHHHHhh
Confidence 88999999999999999999999887543
No 297
>cd01026 TOPRIM_OLD TOPRIM_OLD: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in bacterial and archaeal nucleases of the OLD (overcome lysogenization defect) family. The bacteriophage P2 OLD protein, which has DNase as well as RNase activity, consists of an N-terminal ABC-type ATPase domain and a C-terminal Toprim domain; the nuclease activity of OLD is stimulated by ATP, though the ATPase activity is not DNA-dependent. Functional details on OLD are scant and further experimentation is required to define the relationship between the ATPase and Toprim nuclease domains. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general acid in strand cleavage by nucleases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=27.24 E-value=2.6e+02 Score=20.60 Aligned_cols=39 Identities=13% Similarity=0.238 Sum_probs=31.9
Q ss_pred HHHHcCCEEEEEeCCCHHHHHHHHHHhCCce-EEEcCChh
Q 025522 125 VMDASGVALVLIGPGSVEQARTFSEQTKFKG-VYADPNHS 163 (251)
Q Consensus 125 ~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf-l~sDp~~~ 163 (251)
.+...|+.||.++-.+......+....++|. ++.|-+..
T Consensus 28 ~~~~~~i~ii~~gG~~~~~~~~ll~~~~i~~~vi~D~D~~ 67 (97)
T cd01026 28 DLDEAGISIIPVGGKNFKPFIKLLNALGIPVAVLTDLDAK 67 (97)
T ss_pred CHHHCCEEEEEeCCcchHHHHHHHHHcCCCEEEEEeCCCC
Confidence 4567899999998876666777888889999 99998864
No 298
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=26.96 E-value=1.2e+02 Score=26.53 Aligned_cols=43 Identities=23% Similarity=0.297 Sum_probs=18.0
Q ss_pred HHHHHcHHHHHHcCCEEEEEeCCCH-HHHHHHHHHhCCceEEEc
Q 025522 117 DYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTKFKGVYAD 159 (251)
Q Consensus 117 ~~L~~~~~~~~~~gv~vVaVs~~~~-~~~~~f~~~~~~pfl~sD 159 (251)
.+|.++.+.+++.++++|...+... ..++..+++.+.+.++.|
T Consensus 186 ~~l~~l~~~ik~~~v~~i~~e~~~~~~~~~~la~~~g~~vv~ld 229 (256)
T PF01297_consen 186 KDLAELIKLIKENKVKCIFTEPQFSSKLAEALAKETGVKVVYLD 229 (256)
T ss_dssp HHHHHHHHHHHHTT-SEEEEETTS-THHHHHHHHCCT-EEEESS
T ss_pred HHHHHHHHHhhhcCCcEEEecCCCChHHHHHHHHHcCCcEEEeC
Confidence 3444444445555555555544433 233333444444444444
No 299
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=26.74 E-value=1.2e+02 Score=22.86 Aligned_cols=44 Identities=16% Similarity=0.177 Sum_probs=28.2
Q ss_pred EEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHH
Q 025522 99 AVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS 148 (251)
Q Consensus 99 vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~ 148 (251)
.+++++-..+ +-.++.+..+.+++.|+.+|+|.......+.+++
T Consensus 55 d~vi~is~sg------~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~a 98 (131)
T PF01380_consen 55 DLVIIISYSG------ETRELIELLRFAKERGAPVILITSNSESPLARLA 98 (131)
T ss_dssp EEEEEEESSS------TTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHS
T ss_pred ceeEeeeccc------cchhhhhhhHHHHhcCCeEEEEeCCCCCchhhhC
Confidence 4444544444 3355555556777899999999977665555554
No 300
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=26.71 E-value=2.4e+02 Score=22.24 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=39.0
Q ss_pred cHHHHHHcCCEEEEEeCCCH-----HHHHHHHHHhCCceEEEcCChhHHHHcCCc
Q 025522 122 KKDVMDASGVALVLIGPGSV-----EQARTFSEQTKFKGVYADPNHSSYEALSFV 171 (251)
Q Consensus 122 ~~~~~~~~gv~vVaVs~~~~-----~~~~~f~~~~~~pfl~sDp~~~ly~alGl~ 171 (251)
.-..+++..+.+|.|..|-. ..+...++++++||++......+-++.|+.
T Consensus 35 ~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~sk~~LG~a~g~~ 89 (116)
T COG1358 35 VTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGSKKELGKAVGKE 89 (116)
T ss_pred HHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeCCHHHHHHHhCCC
Confidence 34455566688999988743 356668888999998888888999999988
No 301
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=26.61 E-value=2.3e+02 Score=22.15 Aligned_cols=49 Identities=14% Similarity=0.148 Sum_probs=36.7
Q ss_pred HHHHHHcCCEEEEEeCCCH-----HHHHHHHHHhCCceEEEcCChhHHHHcCCc
Q 025522 123 KDVMDASGVALVLIGPGSV-----EQARTFSEQTKFKGVYADPNHSSYEALSFV 171 (251)
Q Consensus 123 ~~~~~~~gv~vVaVs~~~~-----~~~~~f~~~~~~pfl~sDp~~~ly~alGl~ 171 (251)
...++...+.+|.|..|.. ..+..+++++++|+++.....++-++.|..
T Consensus 35 ~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~sk~eLG~a~Gk~ 88 (117)
T TIGR03677 35 TKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVKKKEDLGAAAGLE 88 (117)
T ss_pred HHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeCCHHHHHHHhCCC
Confidence 3444555688999988752 355667899999997777788999999975
No 302
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=26.53 E-value=1.9e+02 Score=23.78 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=30.0
Q ss_pred HHHHHHHHcHHHHHHcCCEEEEEeCCC-----------------HHHHHHHHHHhCCce
Q 025522 114 KRADYLAAKKDVMDASGVALVLIGPGS-----------------VEQARTFSEQTKFKG 155 (251)
Q Consensus 114 ~el~~L~~~~~~~~~~gv~vVaVs~~~-----------------~~~~~~f~~~~~~pf 155 (251)
++...|.++...+++.|+.+|.+++-. .+.+++.+++++++|
T Consensus 91 ~~~~nl~~ii~~~~~~~~~~il~tp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 149 (198)
T cd01821 91 TYKEYLRRYIAEARAKGATPILVTPVTRRTFDEGGKVEDTLGDYPAAMRELAAEEGVPL 149 (198)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEECCccccccCCCCcccccchhHHHHHHHHHHHhCCCE
Confidence 456677777788888999999987543 135666777777766
No 303
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=26.50 E-value=1.7e+02 Score=24.65 Aligned_cols=83 Identities=13% Similarity=0.032 Sum_probs=53.4
Q ss_pred CCCCcEEecCCCCeEeCCC--ccCCC-cEEEEEEccCCChhhHHHH-HHHHHcHHHHHHcCC--EEEEEeCC-------C
Q 025522 74 LLDTVKVYDVNGNAIPISD--LWKDR-KAVVAFARHFGCVLCRKRA-DYLAAKKDVMDASGV--ALVLIGPG-------S 140 (251)
Q Consensus 74 ~ap~f~l~d~~G~~v~ls~--l~~~~-~vVLvF~R~~~Cp~C~~el-~~L~~~~~~~~~~gv--~vVaVs~~-------~ 140 (251)
-.|++.+.+... +++.. |-+.+ +.||+-+=..-++.=..++ +++.+...++++.+. +|+.||.. +
T Consensus 17 ~~P~l~V~si~~--I~~~~~~Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~ 94 (168)
T PF09419_consen 17 LLPHLYVPSIRD--IDFEANHLKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPD 94 (168)
T ss_pred cCCCEEcCChhh--CCcchhhhhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCcc
Confidence 467777766543 33444 53333 6677666555554444443 456666777777765 59999987 3
Q ss_pred HHHHHHHHHHhCCce-EEE
Q 025522 141 VEQARTFSEQTKFKG-VYA 158 (251)
Q Consensus 141 ~~~~~~f~~~~~~pf-l~s 158 (251)
.+.++.+.+..++|+ .+.
T Consensus 95 ~~~a~~~~~~lgIpvl~h~ 113 (168)
T PF09419_consen 95 GERAEALEKALGIPVLRHR 113 (168)
T ss_pred HHHHHHHHHhhCCcEEEeC
Confidence 578889999999997 554
No 304
>COG4469 CoiA Competence protein CoiA-like family, contains a predicted nuclease domain [General function prediction only]
Probab=26.46 E-value=16 Score=34.10 Aligned_cols=35 Identities=17% Similarity=0.338 Sum_probs=26.1
Q ss_pred cEEecCCCCeEeCCCccCCCcEEEEEEccCCChhhHHHHH
Q 025522 78 VKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRAD 117 (251)
Q Consensus 78 f~l~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~ 117 (251)
++..|.+|+.|.+-+-+.+. ++- .+.||.|..++.
T Consensus 2 ltA~~~ngq~v~ll~~~~k~--~~~---~ffCPaC~~~l~ 36 (342)
T COG4469 2 LTAKDENGQTVNLLTALQKT--QLQ---RFFCPACGSQLI 36 (342)
T ss_pred ceeecCCCCEEEehhhHHHh--hhh---ccccCCCCCeee
Confidence 67889999999998875432 222 478999988764
No 305
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=26.46 E-value=2.5e+02 Score=20.27 Aligned_cols=54 Identities=15% Similarity=0.136 Sum_probs=32.3
Q ss_pred cEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEe--CCCHHHHHHHHHHhCCce
Q 025522 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG--PGSVEQARTFSEQTKFKG 155 (251)
Q Consensus 98 ~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs--~~~~~~~~~f~~~~~~pf 155 (251)
+-..+..|+.-||.=--. +++..+++ +.|-.+.+++ +...+.+..|+++.+..+
T Consensus 8 ~~~~lD~~Gl~CP~Pll~---~kk~l~~l-~~G~~l~V~~dd~~~~~di~~~~~~~G~~~ 63 (81)
T PRK00299 8 PDHTLDALGLRCPEPVMM---VRKTVRNM-QPGETLLIIADDPATTRDIPSFCRFMDHEL 63 (81)
T ss_pred cCeEEecCCCCCCHHHHH---HHHHHHcC-CCCCEEEEEeCCccHHHHHHHHHHHcCCEE
Confidence 345678999999973221 11122222 2343344444 344578999999999887
No 306
>PRK10200 putative racemase; Provisional
Probab=26.28 E-value=1.3e+02 Score=26.30 Aligned_cols=57 Identities=14% Similarity=0.161 Sum_probs=39.0
Q ss_pred HHHHHHHHcHHHHHHcCCEEEEEeCCCHH-HHHHHHHHhCCce-EEEcCChhHHHHcCC
Q 025522 114 KRADYLAAKKDVMDASGVALVLIGPGSVE-QARTFSEQTKFKG-VYADPNHSSYEALSF 170 (251)
Q Consensus 114 ~el~~L~~~~~~~~~~gv~vVaVs~~~~~-~~~~f~~~~~~pf-l~sDp~~~ly~alGl 170 (251)
.-++.|.+....|++.|++.|+|.+-+.. ......++.++|+ =..|......+..|.
T Consensus 59 ~~~~~l~~~~~~L~~~g~~~iviaCNTah~~~~~l~~~~~iPii~ii~~~~~~~~~~~~ 117 (230)
T PRK10200 59 KTGDILAEAALGLQRAGAEGIVLCTNTMHKVADAIESRCSLPFLHIADATGRAITGAGM 117 (230)
T ss_pred hHHHHHHHHHHHHHHcCCCEEEECCchHHHHHHHHHHhCCCCEeehHHHHHHHHHHcCC
Confidence 35678888888999999999999999873 4455556667887 444533333333333
No 307
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=26.06 E-value=97 Score=27.81 Aligned_cols=33 Identities=12% Similarity=0.201 Sum_probs=29.0
Q ss_pred HHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce
Q 025522 123 KDVMDASGVALVLIGPGSVEQARTFSEQTKFKG 155 (251)
Q Consensus 123 ~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf 155 (251)
+.+++++|+.||.+|.-+..+...+.+..+++.
T Consensus 32 ~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~~ 64 (274)
T COG3769 32 LLELKDAGVPVILCSSKTRAEMLYLQKSLGVQG 64 (274)
T ss_pred HHHHHHcCCeEEEeccchHHHHHHHHHhcCCCC
Confidence 567888999999999999988889999988884
No 308
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=25.76 E-value=1.1e+02 Score=23.27 Aligned_cols=46 Identities=13% Similarity=0.012 Sum_probs=30.5
Q ss_pred CcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHH
Q 025522 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS 148 (251)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~ 148 (251)
..-+++++-..+ +-+++.+..+..+++|+.+|+|.......+.+++
T Consensus 46 ~~d~~I~iS~sG------~t~e~~~~~~~a~~~g~~vi~iT~~~~s~la~~a 91 (126)
T cd05008 46 EDTLVIAISQSG------ETADTLAALRLAKEKGAKTVAITNVVGSTLAREA 91 (126)
T ss_pred CCcEEEEEeCCc------CCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhC
Confidence 344555555555 3455666677778899999999987655555543
No 309
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=25.39 E-value=1.4e+02 Score=22.51 Aligned_cols=44 Identities=11% Similarity=0.116 Sum_probs=28.6
Q ss_pred cEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHH
Q 025522 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (251)
Q Consensus 98 ~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f 147 (251)
..+++++=..+.. .++.+..+..++.|+.+|+|+......+.++
T Consensus 61 ~~~~i~iS~~g~~------~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~~ 104 (139)
T cd05013 61 GDVVIAISFSGET------KETVEAAEIAKERGAKVIAITDSANSPLAKL 104 (139)
T ss_pred CCEEEEEeCCCCC------HHHHHHHHHHHHcCCeEEEEcCCCCChhHHh
Confidence 3466666666654 3445555667788999999998765545543
No 310
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=25.33 E-value=1.2e+02 Score=25.47 Aligned_cols=36 Identities=11% Similarity=0.138 Sum_probs=28.4
Q ss_pred HHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce
Q 025522 120 AAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG 155 (251)
Q Consensus 120 ~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf 155 (251)
.+....+++.|..++.||.+....++.+.++.++..
T Consensus 91 ~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~ 126 (219)
T TIGR00338 91 EELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDA 126 (219)
T ss_pred HHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCc
Confidence 334556677899999999998888888888888764
No 311
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=25.25 E-value=3.5e+02 Score=21.48 Aligned_cols=32 Identities=9% Similarity=-0.052 Sum_probs=20.5
Q ss_pred cceEEEEcCCCCeEEEEEeCCCCCCCCCHHHHHHH
Q 025522 214 QGGIIVAGPGKSNISYIHRDKEAGDDPDIQDILKA 248 (251)
Q Consensus 214 ~gg~fVid~ggg~I~~~h~~~~~~D~~~~~eIL~a 248 (251)
.|..++++++ |++++.+.+... ..++.++++.
T Consensus 77 iPt~v~~~~~-G~~v~~~~G~~~--~~~l~~~l~~ 108 (142)
T cd02950 77 IPHFVFLDRE-GNEEGQSIGLQP--KQVLAQNLDA 108 (142)
T ss_pred CCEEEEECCC-CCEEEEEeCCCC--HHHHHHHHHH
Confidence 5678999887 699988887332 2234444444
No 312
>PLN02954 phosphoserine phosphatase
Probab=25.04 E-value=1.3e+02 Score=25.18 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=30.1
Q ss_pred HHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCc
Q 025522 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (251)
Q Consensus 117 ~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~p 154 (251)
+.+.+....+++.|+.+..||.+....++..++.++++
T Consensus 87 pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~ 124 (224)
T PLN02954 87 PGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIP 124 (224)
T ss_pred ccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCC
Confidence 34445566677889999999998888888888888886
No 313
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=24.91 E-value=2.2e+02 Score=25.10 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=16.9
Q ss_pred HHHHcHHHHHHcCCEEEEEeCCCH-HHHHHHHHHhCCce
Q 025522 118 YLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTKFKG 155 (251)
Q Consensus 118 ~L~~~~~~~~~~gv~vVaVs~~~~-~~~~~f~~~~~~pf 155 (251)
+|.++...+++.++.+|.+-+... ..++..+++.+.+.
T Consensus 205 ~l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v 243 (266)
T cd01018 205 DLKRLIDLAKEKGVRVVFVQPQFSTKSAEAIAREIGAKV 243 (266)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHcCCeE
Confidence 444444444555555555444322 23334444444444
No 314
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=24.70 E-value=1.7e+02 Score=27.21 Aligned_cols=51 Identities=20% Similarity=0.181 Sum_probs=38.3
Q ss_pred HHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCc--e-EEEcCChhHHHH
Q 025522 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK--G-VYADPNHSSYEA 167 (251)
Q Consensus 117 ~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~p--f-l~sDp~~~ly~a 167 (251)
+...+...+++++|+.+..++.++.+.+....+..++. | ++.-.+...++.
T Consensus 151 p~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~yFDvII~~g~i~~k~ 204 (303)
T PHA03398 151 PFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGYFDIIICGGRKAGEY 204 (303)
T ss_pred hhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCccccEEEECCCccccc
Confidence 55667788889999999999999888889999999887 4 444344433333
No 315
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=24.67 E-value=1.9e+02 Score=28.45 Aligned_cols=45 Identities=13% Similarity=0.160 Sum_probs=37.7
Q ss_pred HHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCceEEEcC
Q 025522 116 ADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGVYADP 160 (251)
Q Consensus 116 l~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pfl~sDp 160 (251)
...|+++...|.+.|+.+++...+..+.+.+++++.+..-|+.+-
T Consensus 54 ~~sL~~L~~~L~~~gi~L~v~~~~~~~~l~~~~~~~~~~~v~~n~ 98 (461)
T COG0415 54 LQSLQALQQSLAELGIPLLVREGDPEQVLPELAKQLAATTVFWNR 98 (461)
T ss_pred HHHHHHHHHHHHHcCCceEEEeCCHHHHHHHHHHHhCcceEEeee
Confidence 445999999999999999999999999999999998855455543
No 316
>PRK07283 hypothetical protein; Provisional
Probab=24.62 E-value=2.5e+02 Score=21.13 Aligned_cols=50 Identities=8% Similarity=-0.038 Sum_probs=33.9
Q ss_pred HHHHHHcCCEEEEEeCCCHHHHH----HHHHHhCCceEEEcCChhHHHHcCCcc
Q 025522 123 KDVMDASGVALVLIGPGSVEQAR----TFSEQTKFKGVYADPNHSSYEALSFVS 172 (251)
Q Consensus 123 ~~~~~~~gv~vVaVs~~~~~~~~----~f~~~~~~pfl~sDp~~~ly~alGl~~ 172 (251)
...+++..+.+|.+..|-.+..+ ..++.+++|++..+...++-.++|-..
T Consensus 27 ~~aik~gk~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~~t~~eLG~a~Gk~~ 80 (98)
T PRK07283 27 VKAIQSGQAKLVFLANDAGPNLTKKVTDKSNYYQVEVSTVFSTLELSAAVGKPR 80 (98)
T ss_pred HHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCHHHHHHHhCCCc
Confidence 34555566889999988664333 566677899833346678888888644
No 317
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=24.47 E-value=1.4e+02 Score=26.66 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=27.4
Q ss_pred HHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCC
Q 025522 116 ADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (251)
Q Consensus 116 l~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~ 153 (251)
+..|.+...++.+.|+.||||.+|-...-...+.+.|+
T Consensus 195 ~~~l~~iI~~l~~~g~~VvAivsD~g~~N~~~w~~Lgi 232 (236)
T PF12017_consen 195 ADILKNIIEKLHEIGYNVVAIVSDMGSNNISLWRELGI 232 (236)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCcchHHHHHHcCC
Confidence 55666777889999999999999876444444444454
No 318
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=24.08 E-value=85 Score=24.30 Aligned_cols=28 Identities=21% Similarity=0.190 Sum_probs=20.8
Q ss_pred EEEeCCCHHHHHHHHHHhCCce-EEEcCC
Q 025522 134 VLIGPGSVEQARTFSEQTKFKG-VYADPN 161 (251)
Q Consensus 134 VaVs~~~~~~~~~f~~~~~~pf-l~sDp~ 161 (251)
+-+.-++.|.+.+|++++|++| |.....
T Consensus 51 v~l~F~skE~Ai~yaer~G~~Y~V~~p~~ 79 (101)
T PF04800_consen 51 VRLKFDSKEDAIAYAERNGWDYEVEEPKK 79 (101)
T ss_dssp CEEEESSHHHHHHHHHHCT-EEEEE-STT
T ss_pred eEeeeCCHHHHHHHHHHcCCeEEEeCCCC
Confidence 4556688999999999999999 765433
No 319
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=23.50 E-value=1.6e+02 Score=23.97 Aligned_cols=35 Identities=11% Similarity=0.171 Sum_probs=27.0
Q ss_pred HHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCc
Q 025522 120 AAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (251)
Q Consensus 120 ~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~p 154 (251)
.+....++++|+.++.||.+....++...+..++.
T Consensus 86 ~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~ 120 (201)
T TIGR01491 86 EELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPD 120 (201)
T ss_pred HHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCC
Confidence 34456667789999999988888888888887765
No 320
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=23.07 E-value=2e+02 Score=24.06 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=27.4
Q ss_pred HHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCc
Q 025522 119 LAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (251)
Q Consensus 119 L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~p 154 (251)
..+...+++++|+.+..|+....+.++...+..++.
T Consensus 92 ~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~ 127 (220)
T TIGR03351 92 AEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWT 127 (220)
T ss_pred HHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhh
Confidence 445567777889999999988887777777777664
No 321
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=22.77 E-value=2.6e+02 Score=25.66 Aligned_cols=52 Identities=13% Similarity=0.209 Sum_probs=37.6
Q ss_pred CCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce
Q 025522 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG 155 (251)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf 155 (251)
+...+++++-.+| +-.+..+..+..++.|+.+|+|+.++ .+.++++..+.+.
T Consensus 77 ~~~dlvI~iS~SG------~T~e~~~a~~~a~~~ga~vIaIT~~~--~L~~~a~~~~~~~ 128 (337)
T PRK08674 77 DEKTLVIAVSYSG------NTEETLSAVEQALKRGAKIIAITSGG--KLKEMAKEHGLPV 128 (337)
T ss_pred CCCcEEEEEcCCC------CCHHHHHHHHHHHHCCCeEEEECCCc--hHHHHHHhcCCeE
Confidence 4556777776766 34455555666677899999999765 4888888877776
No 322
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=22.68 E-value=78 Score=21.21 Aligned_cols=21 Identities=19% Similarity=0.039 Sum_probs=14.8
Q ss_pred EEEccCCChhhHHHHHHHHHc
Q 025522 102 AFARHFGCVLCRKRADYLAAK 122 (251)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~ 122 (251)
.+|...+||+|++-...|.+.
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~ 22 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEK 22 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHc
Confidence 356677899998877666544
No 323
>PF02244 Propep_M14: Carboxypeptidase activation peptide; InterPro: IPR003146 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The peptidases are synthesised as inactive molecules, zymogens, with propeptides that must be removed by proteolytic cleavage to activate the enzyme. Structural studies of carboxypeptidases A and B reveal the propeptide to exist as a globular domain, followed by an extended alpha-helix; this shields the catalytic site, without specifically binding to it, while the substrate-binding site is blocked by making specific contacts [, ]. Members of this propeptide family are found in the metallocarboxypeptidases: A1, A2 [], A3, A4, A5, A6, U, insect gut carboxypeptidase and B [], and and are associated with peptidases belonging to MEROPS peptidase family M14A. Carboxypeptidases are found in abundance in pancreatic secretions. The pro-segment moiety (activation peptide) accounts for up to a quarter of the total length of the peptidase.; GO: 0004180 carboxypeptidase activity, 0006508 proteolysis; PDB: 3D68_C 3D67_B 3D66_A 1PBA_A 3GLJ_A 1NSA_A 1KWM_A 2BOA_B 1PYT_A 1JQG_A ....
Probab=22.54 E-value=1.1e+02 Score=21.21 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=22.9
Q ss_pred EEEEEeCCCHHHHHHHHHHhCCce-EEEc
Q 025522 132 ALVLIGPGSVEQARTFSEQTKFKG-VYAD 159 (251)
Q Consensus 132 ~vVaVs~~~~~~~~~f~~~~~~pf-l~sD 159 (251)
.=|.|.+........+.++.+++| |..|
T Consensus 36 ~dv~V~p~~~~~f~~~L~~~~i~~~v~i~ 64 (74)
T PF02244_consen 36 VDVMVPPEKLEEFEELLKEHGIEYEVLIE 64 (74)
T ss_dssp EEEEEEGGGHHHHHHHHHHTT-EEEEEES
T ss_pred EEEEECHHHHHHHHHHHHHCCCcEEEEeH
Confidence 457888888899999999999999 7665
No 324
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=22.10 E-value=2.4e+02 Score=27.42 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=36.8
Q ss_pred HHHHHHHcHHHHHHcCCEEEEEeC---C-CHHHHHHHHHHhCCceEEEcCC
Q 025522 115 RADYLAAKKDVMDASGVALVLIGP---G-SVEQARTFSEQTKFKGVYADPN 161 (251)
Q Consensus 115 el~~L~~~~~~~~~~gv~vVaVs~---~-~~~~~~~f~~~~~~pfl~sDp~ 161 (251)
.+..|.++..+|++.|..++++.. + ..+.+.++++++++.-|+.+.+
T Consensus 55 l~esL~~L~~~L~~~g~~L~v~~g~~~g~~~~vl~~l~~~~~i~~v~~~~~ 105 (472)
T PRK10674 55 INAQLNALQIALAEKGIPLLFHEVDDFAASVEWLKQFCQQHQVTHLFYNYQ 105 (472)
T ss_pred HHHHHHHHHHHHHHcCCceEEEecCCcCCHHHHHHHHHHHcCCCEEEEecc
Confidence 456788889999999999999974 3 4467888988888776777754
No 325
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=21.93 E-value=1.3e+02 Score=20.35 Aligned_cols=55 Identities=15% Similarity=-0.014 Sum_probs=29.3
Q ss_pred EEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHH-HHHHHHHHhCCc-e-EEEcCCh
Q 025522 103 FARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE-QARTFSEQTKFK-G-VYADPNH 162 (251)
Q Consensus 103 F~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~-~~~~f~~~~~~p-f-l~sDp~~ 162 (251)
+|-..+|+.|++-...|.+. ....+++-|.....+ ...+|.+.+... . ++.|.+.
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~-----gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~ 60 (74)
T cd03045 3 LYYLPGSPPCRAVLLTAKAL-----GLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGF 60 (74)
T ss_pred EEeCCCCCcHHHHHHHHHHc-----CCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCE
Confidence 56678999999766655443 222455555543222 234565554432 2 5555443
No 326
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=21.93 E-value=2.1e+02 Score=27.84 Aligned_cols=61 Identities=11% Similarity=0.119 Sum_probs=37.0
Q ss_pred CCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce---EEEcCC
Q 025522 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG---VYADPN 161 (251)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf---l~sDp~ 161 (251)
++|+-+..|=-..||+|..-++.++++... .-++..-.|- .....++++++++.. ++.|.+
T Consensus 115 ~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~--~~~i~~~~id---~~~~~~~~~~~~v~~VP~~~i~~~ 178 (517)
T PRK15317 115 DGDFHFETYVSLSCHNCPDVVQALNLMAVL--NPNITHTMID---GALFQDEVEARNIMAVPTVFLNGE 178 (517)
T ss_pred CCCeEEEEEEcCCCCCcHHHHHHHHHHHHh--CCCceEEEEE---chhCHhHHHhcCCcccCEEEECCc
Confidence 467766666799999999888877666543 2355555552 223334445555443 665644
No 327
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=21.87 E-value=1.4e+02 Score=20.34 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=22.1
Q ss_pred eEEEEcCCCCeEEEEEeCCCCCCCCCHH-HHHHHhh
Q 025522 216 GIIVAGPGKSNISYIHRDKEAGDDPDIQ-DILKACC 250 (251)
Q Consensus 216 g~fVid~ggg~I~~~h~~~~~~D~~~~~-eIL~al~ 250 (251)
-.|.++++ |+|....+.+..++ +.++ +++++++
T Consensus 14 v~~~i~~~-G~v~~~~i~~ssg~-~~ld~~a~~av~ 47 (74)
T TIGR01352 14 VRFTVDAD-GRVTSVSVLKSSGD-EALDRAALEAVR 47 (74)
T ss_pred EEEEECCC-CCEEEEEEEEcCCC-hhHHHHHHHHHH
Confidence 37899998 69998888766543 4433 4555553
No 328
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=21.77 E-value=1.4e+02 Score=24.67 Aligned_cols=36 Identities=22% Similarity=0.247 Sum_probs=27.7
Q ss_pred HHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCc
Q 025522 119 LAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (251)
Q Consensus 119 L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~p 154 (251)
..+....++++|+.+..++..+...++.+.++.++.
T Consensus 90 ~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~ 125 (213)
T TIGR01449 90 VEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLA 125 (213)
T ss_pred HHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcH
Confidence 344456677889999999988888888888887764
No 329
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=21.68 E-value=3.5e+02 Score=21.98 Aligned_cols=25 Identities=28% Similarity=0.222 Sum_probs=20.0
Q ss_pred HHHHHcHHHHHHcCCEEEEEeCCCH
Q 025522 117 DYLAAKKDVMDASGVALVLIGPGSV 141 (251)
Q Consensus 117 ~~L~~~~~~~~~~gv~vVaVs~~~~ 141 (251)
+...+...+|+++|+.+++++..+.
T Consensus 29 pgv~e~L~~Lk~~G~~l~i~TN~~~ 53 (176)
T TIGR00213 29 DGVIDALRELKKMGYALVLVTNQSG 53 (176)
T ss_pred CCHHHHHHHHHHCCCEEEEEeCCcc
Confidence 4566677888899999999998763
No 330
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=21.66 E-value=2.6e+02 Score=22.86 Aligned_cols=39 Identities=13% Similarity=0.191 Sum_probs=28.4
Q ss_pred HHHHHcHHHHHHcCCEEEEEeCCC-HHHHHHHHHHhCCce
Q 025522 117 DYLAAKKDVMDASGVALVLIGPGS-VEQARTFSEQTKFKG 155 (251)
Q Consensus 117 ~~L~~~~~~~~~~gv~vVaVs~~~-~~~~~~f~~~~~~pf 155 (251)
+.+.+..+++++.|..++.++..+ ...++.+.+..++.+
T Consensus 46 pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~ 85 (170)
T TIGR01668 46 PALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIPV 85 (170)
T ss_pred hhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCEE
Confidence 455666788888999999999887 456666666666543
No 331
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=21.62 E-value=1.6e+02 Score=17.89 Aligned_cols=23 Identities=4% Similarity=0.121 Sum_probs=18.0
Q ss_pred cceEEEEcCCCCeEEEEEeCCCC
Q 025522 214 QGGIIVAGPGKSNISYIHRDKEA 236 (251)
Q Consensus 214 ~gg~fVid~ggg~I~~~h~~~~~ 236 (251)
-|-.+-+|...|+++|.|.....
T Consensus 9 ~g~l~AlD~~TG~~~W~~~~~~~ 31 (38)
T PF01011_consen 9 DGYLYALDAKTGKVLWKFQTGPP 31 (38)
T ss_dssp TSEEEEEETTTTSEEEEEESSSG
T ss_pred CCEEEEEECCCCCEEEeeeCCCC
Confidence 35678899888899999987543
No 332
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=21.52 E-value=1.6e+02 Score=23.72 Aligned_cols=34 Identities=9% Similarity=0.042 Sum_probs=29.0
Q ss_pred cHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce
Q 025522 122 KKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG 155 (251)
Q Consensus 122 ~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf 155 (251)
..++|+++|+++..++......++...+++++..
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~~ 69 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTLGITH 69 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCCE
Confidence 4567788999999999998888889999988875
No 333
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=21.49 E-value=2.4e+02 Score=21.86 Aligned_cols=46 Identities=13% Similarity=0.229 Sum_probs=31.8
Q ss_pred EeCCCccCCCcEEEEEEccCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeC
Q 025522 88 IPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP 138 (251)
Q Consensus 88 v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~ 138 (251)
-.|+++-++..-++-|+.--+|| -..+.....++.+.|+++|-++.
T Consensus 28 g~F~~y~~~~~elvgf~~CgGCp-----g~~~~~~~~~l~~~~~d~IHlss 73 (107)
T PF08821_consen 28 GAFARYDDEDVELVGFFTCGGCP-----GRKLVRRIKKLKKNGADVIHLSS 73 (107)
T ss_pred CccccCCCCCeEEEEEeeCCCCC-----hhHHHHHHHHHHHCCCCEEEEcC
Confidence 34666622235578888888888 55666667777788999888874
No 334
>TIGR00035 asp_race aspartate racemase.
Probab=21.41 E-value=1.6e+02 Score=25.53 Aligned_cols=58 Identities=5% Similarity=0.064 Sum_probs=40.3
Q ss_pred HHHHHHHcHHHHHHcCCEEEEEeCCCHHH-HHHHHHHhCCce-EEEcCChhHHHHcCCcc
Q 025522 115 RADYLAAKKDVMDASGVALVLIGPGSVEQ-ARTFSEQTKFKG-VYADPNHSSYEALSFVS 172 (251)
Q Consensus 115 el~~L~~~~~~~~~~gv~vVaVs~~~~~~-~~~f~~~~~~pf-l~sDp~~~ly~alGl~~ 172 (251)
-.+.+.+....|++.|++.|+|.+-+... ..+..+..++|+ =..|+.-+..+..|..+
T Consensus 60 ~~~~l~~~~~~L~~~g~d~iviaCNTah~~~~~l~~~~~iPii~i~~~~~~~~~~~~~~~ 119 (229)
T TIGR00035 60 PRPILIDIAVKLENAGADFIIMPCNTAHKFAEDIQKAIGIPLISMIEETAEAVKEDGVKK 119 (229)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCccHHHHHHHHHHhCCCCEechHHHHHHHHHHcCCCE
Confidence 45566777788889999999999988743 555656677887 55676655455555443
No 335
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=21.19 E-value=1.8e+02 Score=24.81 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=27.4
Q ss_pred HHHHHcHHHHHHcCCEEEEEeCCC----HHHHHHHHHHhC
Q 025522 117 DYLAAKKDVMDASGVALVLIGPGS----VEQARTFSEQTK 152 (251)
Q Consensus 117 ~~L~~~~~~~~~~gv~vVaVs~~~----~~~~~~f~~~~~ 152 (251)
.++.+...++++.|+.|-+|+.++ .+.++.|.+..+
T Consensus 123 ~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~ 162 (187)
T cd01452 123 KDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVN 162 (187)
T ss_pred HHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhc
Confidence 346677788889999988888764 368888888764
No 336
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=21.06 E-value=1.5e+02 Score=22.43 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=24.3
Q ss_pred cccceEEEEcCCCCeEEEEEeCCC-----CCCCCCHHHHHHHhh
Q 025522 212 WQQGGIIVAGPGKSNISYIHRDKE-----AGDDPDIQDILKACC 250 (251)
Q Consensus 212 ~q~gg~fVid~ggg~I~~~h~~~~-----~~D~~~~~eIL~al~ 250 (251)
.+.|+++ ++++ |+|+..-++.. +..|+++..|.++.+
T Consensus 17 ~~vgavi-v~~~-~~ii~~g~n~~~~~~~~~~HAE~~ai~~~~~ 58 (109)
T cd01285 17 VPFGAVI-VDDD-GKVIARGHNRVEQDGDPTAHAEIVAIRNAAR 58 (109)
T ss_pred CcEEEEE-EeCC-CEEEEEEeCCCCCCCCCcccHHHHHHHHHHH
Confidence 4555554 5665 47766555543 788999998887754
No 337
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=21.01 E-value=3.1e+02 Score=22.83 Aligned_cols=38 Identities=8% Similarity=0.064 Sum_probs=26.8
Q ss_pred HHHHHcHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCc
Q 025522 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (251)
Q Consensus 117 ~~L~~~~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~p 154 (251)
+...+....++++|+.+..++......+....+..++.
T Consensus 85 ~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~ 122 (214)
T PRK13288 85 ETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLD 122 (214)
T ss_pred cCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCh
Confidence 33445566677778888888887777777777776665
No 338
>COG3593 Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]
Probab=21.01 E-value=1.1e+02 Score=31.07 Aligned_cols=49 Identities=14% Similarity=0.211 Sum_probs=38.7
Q ss_pred HHHHHHc-HHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCce-EEEcCChhH
Q 025522 116 ADYLAAK-KDVMDASGVALVLIGPGSVEQARTFSEQTKFKG-VYADPNHSS 164 (251)
Q Consensus 116 l~~L~~~-~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~pf-l~sDp~~~l 164 (251)
+++|.+. -..|++.|+.||.++...-....+|.+..+++. +++|-|.+-
T Consensus 411 l~~la~~~~~~L~~~gi~VI~~~gs~~k~f~kf~~~~gI~~~vitD~D~~g 461 (581)
T COG3593 411 LPELARQCGIDLEKEGIIVIEFAGSGLKPFIKFAEAMGIRVHVITDGDEAG 461 (581)
T ss_pred HHHHHHHhccccccCcEEEEeecccCcHHHHHHhhccCceEEEEecCCccc
Confidence 3445553 456789999999999988876777999999999 999977543
No 339
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=20.88 E-value=1.7e+02 Score=30.13 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=10.2
Q ss_pred HHHHcHHHHHHcCCEEEEEe
Q 025522 118 YLAAKKDVMDASGVALVLIG 137 (251)
Q Consensus 118 ~L~~~~~~~~~~gv~vVaVs 137 (251)
++.+..+++.+.|..+++|.
T Consensus 412 ~~~~~~~~~a~~G~~~l~va 431 (679)
T PRK01122 412 ELDAAVDEVARKGGTPLVVA 431 (679)
T ss_pred HHHHHHHHHHhCCCcEEEEE
Confidence 44444455555555555544
No 340
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=20.68 E-value=1.8e+02 Score=29.92 Aligned_cols=32 Identities=13% Similarity=0.128 Sum_probs=16.6
Q ss_pred HHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCc
Q 025522 123 KDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (251)
Q Consensus 123 ~~~~~~~gv~vVaVs~~~~~~~~~f~~~~~~p 154 (251)
.++++++|++++.|+-|++..+++.+++.|+.
T Consensus 450 I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~ 481 (673)
T PRK14010 450 FRELREMGIETVMCTGDNELTAATIAKEAGVD 481 (673)
T ss_pred HHHHHHCCCeEEEECCCCHHHHHHHHHHcCCc
Confidence 33444555555555555555555555555543
No 341
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=20.63 E-value=87 Score=28.57 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=14.9
Q ss_pred EccCCChhhHH--HHHHHHHcHHHH
Q 025522 104 ARHFGCVLCRK--RADYLAAKKDVM 126 (251)
Q Consensus 104 ~R~~~Cp~C~~--el~~L~~~~~~~ 126 (251)
+++.|||-|-. -+..+.+...++
T Consensus 6 ~~~~~CpGCg~~~i~~~~~~a~~~l 30 (280)
T PRK11869 6 YDIAWCPGCGNFGIRNALMKALSEL 30 (280)
T ss_pred CCCCCCcCCCCHHHHHHHHHHHHHc
Confidence 67899999964 344555544444
No 342
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=20.62 E-value=2.4e+02 Score=25.09 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=8.9
Q ss_pred HHHcHHHHHHcCCEEEEEeCC
Q 025522 119 LAAKKDVMDASGVALVLIGPG 139 (251)
Q Consensus 119 L~~~~~~~~~~gv~vVaVs~~ 139 (251)
|.++...+++.|+.+|++.+.
T Consensus 209 l~~l~~~ik~~~v~~if~e~~ 229 (282)
T cd01017 209 LAELVEFVKKSDVKYIFFEEN 229 (282)
T ss_pred HHHHHHHHHHcCCCEEEEeCC
Confidence 333333344444444444443
No 343
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=20.46 E-value=4.1e+02 Score=23.90 Aligned_cols=54 Identities=11% Similarity=0.041 Sum_probs=31.6
Q ss_pred HHHcHHHHHHcCC-EEEEEeCC------CH-HHHHHHHHHhCCce-EEEcCChhHHHHcCCcc
Q 025522 119 LAAKKDVMDASGV-ALVLIGPG------SV-EQARTFSEQTKFKG-VYADPNHSSYEALSFVS 172 (251)
Q Consensus 119 L~~~~~~~~~~gv-~vVaVs~~------~~-~~~~~f~~~~~~pf-l~sDp~~~ly~alGl~~ 172 (251)
|.+....++..++ ++.++..+ +. +.+....+++++.. +++..+...|..+|+..
T Consensus 58 l~~f~~~~~~~~v~~i~~vaTsa~R~A~N~~~~~~~i~~~tgi~i~visg~eEa~l~~~gv~~ 120 (300)
T TIGR03706 58 LKRFAELLRGFPVDEVRAVATAALRDAKNGPEFLREAEAILGLPIEVISGEEEARLIYLGVAH 120 (300)
T ss_pred HHHHHHHHHhCCCCeEEEEEcHHHHcCCCHHHHHHHHHHHHCCCeEEeChHHHHHHHHHHHHh
Confidence 3333444455666 46666654 22 34444556789999 88877766666655543
No 344
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=20.43 E-value=73 Score=24.58 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=15.1
Q ss_pred EeCCCHHHHHHHHHHhCCceEEEcCChhH
Q 025522 136 IGPGSVEQARTFSEQTKFKGVYADPNHSS 164 (251)
Q Consensus 136 Vs~~~~~~~~~f~~~~~~pfl~sDp~~~l 164 (251)
+...+.+.+.+|++++++.+++.-|+.-+
T Consensus 46 ~~~~d~~~l~~~a~~~~idlvvvGPE~pL 74 (100)
T PF02844_consen 46 IDITDPEELADFAKENKIDLVVVGPEAPL 74 (100)
T ss_dssp S-TT-HHHHHHHHHHTTESEEEESSHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCEEEECChHHH
Confidence 34555566666666666655444555433
No 345
>KOG3110 consensus Riboflavin kinase [Coenzyme transport and metabolism]
Probab=20.32 E-value=39 Score=27.77 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=14.0
Q ss_pred eccC-CCCCCCccccCCc
Q 025522 28 ILPN-QSPLWRPRHWNKT 44 (251)
Q Consensus 28 ~~~~-~~~~~~~~~~~~~ 44 (251)
|+|- +|.-|||+|.|+-
T Consensus 65 v~kMvmSIGwNP~Y~N~~ 82 (153)
T KOG3110|consen 65 VFKMVMSIGWNPYYKNKK 82 (153)
T ss_pred ceeEEEEcccCcccCCcc
Confidence 6665 8999999998864
No 346
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=20.30 E-value=1.8e+02 Score=25.70 Aligned_cols=14 Identities=21% Similarity=0.403 Sum_probs=12.1
Q ss_pred CCChhhHHHHHHHH
Q 025522 107 FGCVLCRKRADYLA 120 (251)
Q Consensus 107 ~~Cp~C~~el~~L~ 120 (251)
--||+|++.+..|.
T Consensus 19 Gdcpf~qr~~m~L~ 32 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLE 32 (221)
T ss_pred CCChhHHHHHHHHH
Confidence 46999999999886
No 347
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=20.21 E-value=4.8e+02 Score=25.57 Aligned_cols=56 Identities=7% Similarity=-0.015 Sum_probs=36.7
Q ss_pred HHHHcHHHHHHcCC-EEEEEeCCCH-------HHHHHHHHHhCCce-EEEcCChhHHHHcCCccc
Q 025522 118 YLAAKKDVMDASGV-ALVLIGPGSV-------EQARTFSEQTKFKG-VYADPNHSSYEALSFVSG 173 (251)
Q Consensus 118 ~L~~~~~~~~~~gv-~vVaVs~~~~-------~~~~~f~~~~~~pf-l~sDp~~~ly~alGl~~~ 173 (251)
.|.+....+++.++ ++.+|..... +.+++..+++|++. |++..+..-|..+|+...
T Consensus 63 ~L~~F~~~~~~~~v~~i~~vATsAvReA~N~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~ 127 (496)
T PRK11031 63 CLRLFAERLQDIPPSQIRVVATATLRLAVNADEFLAKAQEILGCPVQVISGEEEARLIYQGVAHT 127 (496)
T ss_pred HHHHHHHHHHhCCCCeEEEEEeHHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhc
Confidence 33444444556666 4666665422 34555556789999 999988888888887764
No 348
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=20.19 E-value=2.3e+02 Score=25.88 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=18.8
Q ss_pred HHHHHcHHHHHHcCCEEEEEeCCCH-HHHHHHHHHhCCce
Q 025522 117 DYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTKFKG 155 (251)
Q Consensus 117 ~~L~~~~~~~~~~gv~vVaVs~~~~-~~~~~f~~~~~~pf 155 (251)
.+|.++...+++.++++|.+-+... ..++...++.+.+.
T Consensus 239 ~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~la~e~g~~v 278 (311)
T PRK09545 239 QRLHEIRTQLVEQKATCVFAEPQFRPAVIESVAKGTSVRM 278 (311)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCChHHHHHHHHhcCCeE
Confidence 3444445555555555555555432 33444444455443
No 349
>TIGR02949 anti_SigH_actin anti-sigma factor, TIGR02949 family. This group of anti-sigma factors are associated in an apparent operon with a family of sigma-70 family sigma factors (TIGR02947). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is restricted to the Actinobacteria.
Probab=20.10 E-value=1.1e+02 Score=22.54 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=17.3
Q ss_pred CCChhhHHHHHHHHHcHHHHHHc
Q 025522 107 FGCVLCRKRADYLAAKKDVMDAS 129 (251)
Q Consensus 107 ~~Cp~C~~el~~L~~~~~~~~~~ 129 (251)
..||.|+.++..++.....+...
T Consensus 37 ~~C~~C~~e~~~~~~~~~~L~~~ 59 (84)
T TIGR02949 37 EACPECLEEYGLEQAVKKLLKRC 59 (84)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHh
Confidence 47999999997766666666544
No 350
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.10 E-value=2.5e+02 Score=24.47 Aligned_cols=61 Identities=16% Similarity=0.217 Sum_probs=38.2
Q ss_pred cCCChhhHHHHHHHHHcHHHHHHcCCEEEEEeCCC-----------HHHHHHHHHHhCCceE---EEcCChhHHHHcCCc
Q 025522 106 HFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-----------VEQARTFSEQTKFKGV---YADPNHSSYEALSFV 171 (251)
Q Consensus 106 ~~~Cp~C~~el~~L~~~~~~~~~~gv~vVaVs~~~-----------~~~~~~f~~~~~~pfl---~sDp~~~ly~alGl~ 171 (251)
|..|.+|..++-+ .+.+.|+++++..-.+ .+..++|+++.+++|| |.|.+.-+-++=|+.
T Consensus 9 H~CCAPcs~y~le------~l~~~~~~i~~yFYNPNIhP~~EY~~R~~e~~~f~~~~~i~~iegdY~~~~~w~~~vKg~E 82 (204)
T COG1636 9 HSCCAPCSGYVLE------KLRDSGIKITIYFYNPNIHPLSEYELRKEEVKRFAEKFGINFIEGDYEDLEKWFERVKGME 82 (204)
T ss_pred EeecCCCcHHHHH------HHHhcCcceEEEEeCCCCCchHHHHHHHHHHHHHHHHcCCeeeecCcccHHHHHHHhhcch
Confidence 8999999988654 3445577775544332 1467789999999994 444443344444544
Q ss_pred c
Q 025522 172 S 172 (251)
Q Consensus 172 ~ 172 (251)
.
T Consensus 83 ~ 83 (204)
T COG1636 83 D 83 (204)
T ss_pred h
Confidence 3
Done!